Citrus Sinensis ID: 008727
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 556 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FMU2 | 634 | Pentatricopeptide repeat- | yes | no | 0.985 | 0.864 | 0.569 | 0.0 | |
| Q9FIT7 | 974 | Pentatricopeptide repeat- | no | no | 0.834 | 0.476 | 0.247 | 3e-41 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.947 | 0.721 | 0.250 | 4e-37 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.861 | 0.635 | 0.236 | 1e-35 | |
| Q9SR00 | 602 | Pentatricopeptide repeat- | no | no | 0.794 | 0.734 | 0.253 | 7e-34 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.848 | 0.631 | 0.243 | 4e-33 | |
| Q9M9X9 | 987 | Pentatricopeptide repeat- | no | no | 0.847 | 0.477 | 0.225 | 1e-32 | |
| O49436 | 660 | Pentatricopeptide repeat- | no | no | 0.818 | 0.689 | 0.237 | 4e-32 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.834 | 0.636 | 0.227 | 1e-31 | |
| Q9FFE3 | 535 | Pentatricopeptide repeat- | no | no | 0.769 | 0.8 | 0.245 | 1e-31 |
| >sp|Q9FMU2|PP380_ARATH Pentatricopeptide repeat-containing protein At5g14080 OS=Arabidopsis thaliana GN=At5g14080 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/550 (56%), Positives = 426/550 (77%), Gaps = 2/550 (0%)
Query: 3 MRPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLT 62
MRPAT+LA RI + ++ S +R AR W+PL+EQ+LH LG R S+SPSLVARVI+P+LL
Sbjct: 1 MRPATELAVRIGRELLKVSGSSRAARIWSPLIEQSLHGLGFRHSISPSLVARVIDPFLLN 60
Query: 63 HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122
HHSLALGFFNWA+QQP ++H +SYHSI KSLSLSRQ +A+D++ KQVK NKI LDSSVY
Sbjct: 61 HHSLALGFFNWAAQQPGYSHDSISYHSIFKSLSLSRQFSAMDALFKQVKSNKILLDSSVY 120
Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182
R +I +L+ G+ Q AF V E ++I P++CN LLA L SDG D A K+F +M H
Sbjct: 121 RSLIDTLVLGRKAQSAFWVLEEAFSTGQEIHPDVCNRLLAGLTSDGCYDYAQKLFVKMRH 180
Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
+GV +T+GFGV+I FC +++ Q+L ++DEV+K N INGS+IA+LI+H CK R
Sbjct: 181 KGVSLNTLGFGVYIGWFCRSSETNQLLRLVDEVKK-ANLNINGSIIALLILHSLCKCSRE 239
Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
+AF +L+ELR +CKPDF+AYR++AE F + G+++ER+VVLKKKRKLGVAPR++DYR F
Sbjct: 240 MDAFYILEELRNIDCKPDFMAYRVIAEAFVVTGNLYERQVVLKKKRKLGVAPRSSDYRAF 299
Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV 362
IL LI +R+ EAKE+ EVIVSGKF +D+D+L+ALIGSVS++DP SA+ F +M+ G++
Sbjct: 300 ILDLISAKRLTEAKEVAEVIVSGKFPMDNDILDALIGSVSAVDPDSAVEFLVYMVSTGKL 359
Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
P + TLS LSKNLC+ +KSD L++ Y++LS+ YF++++SY++M+SFLC +GR+RE+Y
Sbjct: 360 PAIRTLSKLSKNLCRHDKSDHLIKAYELLSSKGYFSELQSYSLMISFLCKAGRVRESYTA 419
Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
+QEMK++GL PDVS YN+L+EACC+ +++RPAKKLWD+MF GC NL TYN+LI K SE
Sbjct: 420 LQEMKKEGLAPDVSLYNALIEACCKAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSE 479
Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-VMLARS 541
GE E +LRLF MLE+G+ PD T Y SL+EGLC+ET ++AA EVF K + D + R
Sbjct: 480 EGEAEESLRLFDKMLERGIEPDETIYMSLIEGLCKETKIEAAMEVFRKCMERDHKTVTRR 539
Query: 542 ILSTFMISLC 551
+LS F+++LC
Sbjct: 540 VLSEFVLNLC 549
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 116/469 (24%), Positives = 228/469 (48%), Gaps = 5/469 (1%)
Query: 86 SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
+Y ++ L +++ S+L ++ ++LD+ Y +I L++G+N A + +E+
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM 338
Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
+ +I P + + + V++ +G ++ A +FD M G+ + I +C +
Sbjct: 339 VSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNV 398
Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
Q +L E++KR N +I+ ++ G C ++ A+ ++ E+ C+P+ + Y
Sbjct: 399 RQGYELLVEMKKR-NIVISPYTYGT-VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYT 456
Query: 266 IVAEEFKLMGSVFEREV-VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
+ + F L S F + VLK+ ++ G+AP Y I+GL +R+ EA+ +V
Sbjct: 457 TLIKTF-LQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515
Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
+ A I G + + + SA + M E G +P + L CK+ K E
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIE 575
Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
Y+ + D ++Y V+++ L + ++ +A + +EM+ KG+ PDV Y L+
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN 635
Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
+ ++ A ++D+M G + N+ YN+L+ F GEIE A L M KG+ P
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695
Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
+A TY ++++G C+ +L AF +F++ ++ + +T + CR
Sbjct: 696 NAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 156 bits (395), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 143/571 (25%), Positives = 249/571 (43%), Gaps = 44/571 (7%)
Query: 24 TRPARKWTPLLEQTLHQLGLRDS---LSPSLVARVINPYLLTHHSLALGFFNWASQQPNF 80
T A +W LL + LR+S ++P + +++ L + S ++ F+W Q +
Sbjct: 51 TDSANEWEKLL-KPFDLDSLRNSFHKITPFQLYKLLE--LPLNVSTSMELFSWTGSQNGY 107
Query: 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140
HS Y ++ L + + ID +L Q+K I S++ I+ + +
Sbjct: 108 RHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTR 167
Query: 141 VFNEVK--FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198
+ E++ ++CE N +L +L S A +F +M R + + FGV +
Sbjct: 168 LMLEMRNVYSCEPTFKSY-NVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKA 226
Query: 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258
FC ++ LS+L ++ K + + SVI +IH K RV EA ++L+E+ + C
Sbjct: 227 FCAVNEIDSALSLLRDMTK--HGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCV 284
Query: 259 PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318
PD + V + E ++ + G AP Y + GL R+ AK+L
Sbjct: 285 PDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDL 344
Query: 319 ------GEVIV----------SGKFTIDDDVLNALI---GSVSSIDPRSAIVF------- 352
E+++ G+ VL+ ++ G V + +++++
Sbjct: 345 FYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGL 404
Query: 353 -------FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405
+ M KG P + + + L CK K DE V +SA+ + +N
Sbjct: 405 VGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNC 464
Query: 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465
++S C R+ EA + +EM RKG PDV +NSL+ C D ++ A L M + G
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEG 524
Query: 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525
N TYN LI+ F GEI+ A +L + M+ +G D TY SL++GLC+ + A
Sbjct: 525 VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKAR 584
Query: 526 EVFNKSVNHDVMLARSILSTFMISLCRRVLI 556
+F K + + + + LCR ++
Sbjct: 585 SLFEKMLRDGHAPSNISCNILINGLCRSGMV 615
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 118/498 (23%), Positives = 235/498 (47%), Gaps = 19/498 (3%)
Query: 65 SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
S AL FN AS++PNF+ P Y IL L S + + +L+ +K ++ + +S +
Sbjct: 64 SAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLI 123
Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PE--ICNSLLAVLASDGYIDNALKMFD-- 178
+I S Q + + SV V + ++ G P+ N +L +L DG N+LK+ +
Sbjct: 124 LIESYAQFELQDEILSV---VDWMIDEFGLKPDTHFYNRMLNLLV-DG---NSLKLVEIS 176
Query: 179 --EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
+MS G++ F V I C +L + ML+++ ++ ++ G+
Sbjct: 177 HAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSY--GLVPDEKTFTTVMQGY 234
Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER-EVVLKKKRKLGVAPR 295
+ ++ A ++ +++ C ++ ++ F G V + + + + G P
Sbjct: 235 IEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPD 294
Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFN 354
+ + GL + A E+ +V++ + D N++I + + + + A+ +
Sbjct: 295 QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLD 354
Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
MI + P T + L LCK N+ +E E+ +VL++ D+ ++N ++ LC +
Sbjct: 355 QMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTR 414
Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
R A + +EM+ KG +PD YN L+++ C + L A + QM SGC+ ++ TYN
Sbjct: 415 NHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYN 474
Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
LI F + + A +F M GV+ ++ TY +L++GLC+ ++ A ++ ++ +
Sbjct: 475 TLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME 534
Query: 535 DVMLARSILSTFMISLCR 552
+ ++ + CR
Sbjct: 535 GQKPDKYTYNSLLTHFCR 552
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 129/508 (25%), Positives = 214/508 (42%), Gaps = 66/508 (12%)
Query: 50 SLVARVINPYLLTHHSLALGFFNWAS--------------QQPNFTHSPLSYHSILKSLS 95
++V + NP ++ L GFF + QP+ +Y++++
Sbjct: 114 TMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDV----FAYNALINGFC 169
Query: 96 LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV-KFNCEDIGP 154
+I+ VL +++ + D+ Y +I SL A V N++ NC+ P
Sbjct: 170 KMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQ---P 226
Query: 155 EICNSLLAVLAS--DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212
+ + + A+ +G +D ALK+ DEM RG++ +
Sbjct: 227 TVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNT------------------ 268
Query: 213 DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
II G CK V+ AF+++ L ++ C+PD I+Y I+
Sbjct: 269 -------------------IIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALL 309
Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
G E E ++ K P Y I L + +I EA L +++ T D
Sbjct: 310 NQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY 369
Query: 333 VLNALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
+ LI + +D AI F MI G +P + + + LCK K+D+ +E++
Sbjct: 370 SYDPLIAAFCREGRLD--VAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFG 427
Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
L + SYN M S L +SG A +I EM G+DPD YNS++ CRE
Sbjct: 428 KLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREG 487
Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
++ A +L M + ++ TYNI++ F + IE A+ + +M+ G P+ TTYT
Sbjct: 488 MVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYT 547
Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVM 537
L+EG+ A E+ N V D +
Sbjct: 548 VLIEGIGFAGYRAEAMELANDLVRIDAI 575
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 120/493 (24%), Positives = 220/493 (44%), Gaps = 21/493 (4%)
Query: 64 HSLALGFFNWASQQPNFT--HSPLSYHSILK-SLSLSRQINAIDSVLKQVKVNKITL--- 117
+L L F NWA+ FT ++ H + K L + QI A D K + +L
Sbjct: 62 QALILKFLNWANPHQFFTLRCKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFK 121
Query: 118 -----------DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL-AVLA 165
SSV+ ++ S + KA S+ + + + G N++L A +
Sbjct: 122 SLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIR 181
Query: 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING 225
S I A +F EM V + + + I FC + L++ D++ + +
Sbjct: 182 SKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETK--GCLPN 239
Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285
V +I G+CK +++++ FK+L + ++ +P+ I+Y +V G + E VL
Sbjct: 240 VVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLT 299
Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI- 344
+ + G + Y I G E +A + ++ T +LI S+
Sbjct: 300 EMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAG 359
Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
+ A+ F + M +G P T + L ++ +E V + ++ N + + +YN
Sbjct: 360 NMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYN 419
Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
+++ C +G++ +A V+++MK KGL PDV Y++++ CR + A ++ +M
Sbjct: 420 ALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEK 479
Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
G + TY+ LI F E + A L+ ML G+ PD TYT+L+ C E +L+ A
Sbjct: 480 GIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKA 539
Query: 525 FEVFNKSVNHDVM 537
++ N+ V V+
Sbjct: 540 LQLHNEMVEKGVL 552
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 114/505 (22%), Positives = 223/505 (44%), Gaps = 34/505 (6%)
Query: 43 LRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINA 102
R+ LS SLV V+ L+ S + FF WA +Q + H+ Y++++ +
Sbjct: 126 FREKLSESLVIEVLR--LIARPSAVISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKV 183
Query: 103 IDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI----GPEICN 158
+ L+Q++ + D V+ + L++ +FS+ E +D N
Sbjct: 184 PEEFLQQIRDD----DKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYN 239
Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218
L+ +D+A + EMS + F + C+ K + L++++
Sbjct: 240 CLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVET---- 295
Query: 219 ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
+ + +V +I G C+ EEA L+ +R C P+ + Y + L G +
Sbjct: 296 -ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTL-----LCGCLN 349
Query: 279 EREV-----VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV 333
++++ VL G P + + A +L + +V V
Sbjct: 350 KKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVV 409
Query: 334 LNALIGSVSSIDPRS--------AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
N LIGS+ D S A ++ M+ G V +S+ ++ LC K ++
Sbjct: 410 YNILIGSICG-DKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAF 468
Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
V + + + D +Y+ ++++LC + ++ A+ + +EMKR GL DV Y ++++
Sbjct: 469 SVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSF 528
Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
C+ L+ A+K +++M GC+ N+ TY LI + + ++ A LF ML +G P+
Sbjct: 529 CKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNI 588
Query: 506 TTYTSLLEGLCQETNLQAAFEVFNK 530
TY++L++G C+ ++ A ++F +
Sbjct: 589 VTYSALIDGHCKAGQVEKACQIFER 613
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 112/471 (23%), Positives = 226/471 (47%), Gaps = 16/471 (3%)
Query: 70 FFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKV-NKITLDSSVYRFIIPS 128
F A + +F + S+++S + S ++++ +L ++++ N++ ++ S FI+
Sbjct: 63 MFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERS---FIVVF 119
Query: 129 LIQGKN--TQKAFSVFNEV--KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184
GK KA +F+ + +F C+ NS+L V+ ++G L+ +D + +
Sbjct: 120 RAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSF-NSVLNVIINEGLYHRGLEFYDYVVNSN 178
Query: 185 VEFST----IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
+ + + F + I C+ + + + + + +R+ + +G L+ G CK +
Sbjct: 179 MNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERK-CLPDGYTYCTLM-DGLCKEE 236
Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
R++EA +LDE++ C P + Y ++ + G + ++ G P Y
Sbjct: 237 RIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYN 296
Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEK 359
I GL ++ ++ +A L E +VS K +D LI G V A+ + M E+
Sbjct: 297 TLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEER 356
Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
G S L L K K++E + +++ ++ ++ Y+V+V LC G+ EA
Sbjct: 357 GYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEA 416
Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
++ M G P+ Y+SLM+ + L A ++W +M +GCS N Y++LI
Sbjct: 417 KEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDG 476
Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
VG ++ A+ ++ ML G+ PD Y+S+++GLC ++ AA +++++
Sbjct: 477 LCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHE 527
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/502 (22%), Positives = 234/502 (46%), Gaps = 38/502 (7%)
Query: 78 PNFTHSPLSY----HSILKSLSLSRQINAIDSVLKQVKVNKI----TLDS---------S 120
PNF H+ LS H +++S LS + + ++++ V+++ +LDS S
Sbjct: 107 PNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDS 166
Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
V+ +I + +Q + ++A F ++ + + CN+L+ L G+++ A ++ E+
Sbjct: 167 VFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEI 226
Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
S GV + + + C++ K+ +V + L +V+ E + V +I +
Sbjct: 227 SRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQ--EKGVYPDIVTYNTLISAYSSKG 284
Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
+EEAF++++ + + P Y V G + V + + G++P + YR
Sbjct: 285 LMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYR 344
Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTID---DDVLNALI--GSVSSIDPRS-----AI 350
++ EA + G+V+ + K D DV+ L+ S+ S+ RS A+
Sbjct: 345 SLLM---------EACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL 395
Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
++FN + E G +P + L + C++ + + + D+ +YN ++ L
Sbjct: 396 MYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGL 455
Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
C L EA + EM + L PD L++ C+ L+ A +L+ +M ++
Sbjct: 456 CKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDV 515
Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
TYN L+ F +VG+I+ A ++ +M+ K + P +Y+ L+ LC + +L AF V+++
Sbjct: 516 VTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDE 575
Query: 531 SVNHDVMLARSILSTFMISLCR 552
++ ++ I ++ + CR
Sbjct: 576 MISKNIKPTVMICNSMIKGYCR 597
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 116/473 (24%), Positives = 205/473 (43%), Gaps = 45/473 (9%)
Query: 66 LALGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
LAL F +A + P FTH+ +YHSIL LS +R + ++S++ ++ + + F
Sbjct: 64 LALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLF 123
Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE----ICNSLLAVLASDGYIDNALKMFDEM 180
I L++ + + D G + N+LL VL + D MF
Sbjct: 124 I--DLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNS 181
Query: 181 SHR-GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239
G+ + + + C+ + +LDE+ ++ V I+ G+
Sbjct: 182 KESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSM--GLVPNLVTYTTILGGYVAR 239
Query: 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDY 299
+E A +VL+E+ R PD Y ++ + + +G E V+ K + P
Sbjct: 240 GDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPN---- 295
Query: 300 REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK 359
E G+++ R +C+ K+ GE A F+ M+E+
Sbjct: 296 -EVTYGVMI-RALCKEKKSGE----------------------------ARNMFDEMLER 325
Query: 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419
+P S + LC+ +K DE +++ + N+ D + ++ +LC GR+ EA
Sbjct: 326 SFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEA 385
Query: 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479
+ E + KG P + YN+L+ C + L A +LWD M+ C N TYN+LI
Sbjct: 386 RKLFDEFE-KGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEG 444
Query: 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
S+ G ++ +R+ MLE G P+ TT+ L EGL + + A ++ + +V
Sbjct: 445 LSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAV 497
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 556 | ||||||
| 224055765 | 567 | predicted protein [Populus trichocarpa] | 0.991 | 0.971 | 0.682 | 0.0 | |
| 224143615 | 626 | predicted protein [Populus trichocarpa] | 0.987 | 0.876 | 0.683 | 0.0 | |
| 255543677 | 655 | pentatricopeptide repeat-containing prot | 0.989 | 0.839 | 0.676 | 0.0 | |
| 296082318 | 676 | unnamed protein product [Vitis vinifera] | 0.987 | 0.812 | 0.667 | 0.0 | |
| 225451505 | 660 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.831 | 0.667 | 0.0 | |
| 449490189 | 640 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.857 | 0.627 | 0.0 | |
| 449442054 | 635 | PREDICTED: pentatricopeptide repeat-cont | 0.980 | 0.858 | 0.628 | 0.0 | |
| 297811525 | 634 | pentatricopeptide repeat-containing prot | 0.985 | 0.864 | 0.578 | 0.0 | |
| 30684737 | 634 | pentatricopeptide repeat-containing prot | 0.985 | 0.864 | 0.569 | 0.0 | |
| 9757789 | 663 | unnamed protein product [Arabidopsis tha | 0.985 | 0.826 | 0.569 | 0.0 |
| >gi|224055765|ref|XP_002298642.1| predicted protein [Populus trichocarpa] gi|222845900|gb|EEE83447.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/552 (68%), Positives = 454/552 (82%), Gaps = 1/552 (0%)
Query: 4 RPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTH 63
R T+LA RIS+A+I+ SN + P R W PLLEQTLH++G RDSLS SLVARVI+P+LLTH
Sbjct: 3 RLGTELAVRISRALITESNSSIPTRSWNPLLEQTLHKIGCRDSLSQSLVARVIDPHLLTH 62
Query: 64 HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
HSLALGFFNWASQQP FTH+ L+YHS+LKSLS SRQ NAI+S+LK+ K +TLDSS+YR
Sbjct: 63 HSLALGFFNWASQQPGFTHNSLTYHSVLKSLSFSRQFNAIESLLKRAKAQNLTLDSSIYR 122
Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
F++ SLI+ TQ AFSVFNE+K D+G E NSLLA L SDG +NA+K+FDEM++R
Sbjct: 123 FVVDSLIKRGKTQMAFSVFNEIKSQSLDLGTETSNSLLASLGSDGCFNNAMKVFDEMNNR 182
Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
G+ FSTIGFGVFIW+ C N LG+VL ++DEV R NS+INGSVIAVLI+HG C+G R
Sbjct: 183 GIGFSTIGFGVFIWRLCRNGDLGEVLRLVDEVEGR-NSLINGSVIAVLIVHGLCEGSRTS 241
Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
EA + L+ELRIR KPDFIAYR+VAE F+ +GSVF+ VLK KRKLGVAPR+NDYREFI
Sbjct: 242 EALRALNELRIRGWKPDFIAYRVVAEAFRSLGSVFDVNEVLKMKRKLGVAPRSNDYREFI 301
Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP 363
LGLI ERRI EAKELGEVI SG F ++DDVLNALIGSVS+IDP SA+ FF+F+I KG+ P
Sbjct: 302 LGLITERRIYEAKELGEVIASGNFPMEDDVLNALIGSVSTIDPYSAMKFFHFVIGKGKFP 361
Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
TL TLSNL +NLCK K DEL+EVY+VLS+N+YF+DMESYNVM SFLC GR+REAY V+
Sbjct: 362 TLLTLSNLCRNLCKHGKIDELLEVYRVLSSNEYFSDMESYNVMFSFLCMGGRVREAYEVL 421
Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
QEM++KGLDPD+S YNSL+E CREDLLRPAK+LWD+MF GC GNLKTYNILI KFSE+
Sbjct: 422 QEMRKKGLDPDISMYNSLIEVLCREDLLRPAKRLWDEMFVIGCGGNLKTYNILIGKFSEI 481
Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
G+IE A RLF++MLEKGV PDATT+ LLE LCQET + A +VF K VNHDVMLA++IL
Sbjct: 482 GQIEEATRLFNHMLEKGVTPDATTHRFLLEALCQETMFETAVDVFYKHVNHDVMLAQNIL 541
Query: 544 STFMISLCRRVL 555
T +++LC +V+
Sbjct: 542 KTLILNLCGKVV 553
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224143615|ref|XP_002336062.1| predicted protein [Populus trichocarpa] gi|222869847|gb|EEF06978.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/550 (68%), Positives = 452/550 (82%), Gaps = 1/550 (0%)
Query: 4 RPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTH 63
R T+LA RIS+A+I+ SN + P R W PLLEQTLH++G RDSLS SLVARVI+P+LLTH
Sbjct: 3 RLGTELAVRISRALITESNSSIPTRSWNPLLEQTLHKIGCRDSLSQSLVARVIDPHLLTH 62
Query: 64 HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
HSLALGFFNWASQQP FTH+ L+YHS+LKSLS SRQ NAI+S+LK+ K +TLDSS+YR
Sbjct: 63 HSLALGFFNWASQQPGFTHNSLTYHSVLKSLSFSRQFNAIESLLKRAKAQNLTLDSSIYR 122
Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
F++ SLI+ TQ AFSVFNE+K D+G E NSLLA L SDG +NA+K+FDEM++R
Sbjct: 123 FVVDSLIKRGKTQMAFSVFNEIKSQSLDLGTETSNSLLASLGSDGCFNNAMKVFDEMNNR 182
Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
G+ FSTIGFGVFIW+ C N LG+VL ++DEV R NS+INGSVIAVLI+HG C+G R
Sbjct: 183 GIGFSTIGFGVFIWRLCRNGDLGEVLRLVDEVEGR-NSLINGSVIAVLIVHGLCEGSRTS 241
Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
EA + L+ELRIR KPDFIAYR+VAE F+ +GSVF+ VLK KRKLGVAPR+NDYREFI
Sbjct: 242 EALRALNELRIRGWKPDFIAYRVVAEAFRSLGSVFDVNEVLKMKRKLGVAPRSNDYREFI 301
Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP 363
LGLI ERRI EAKELGEVI SG F ++DDVLNALIGSVS+IDP SA+ FF+F+I KG+ P
Sbjct: 302 LGLITERRIYEAKELGEVIASGNFPMEDDVLNALIGSVSTIDPYSAMKFFHFVIGKGKFP 361
Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
TL TLSNL +NLCK K DEL+EVY+VLS+N+YF+DMESYNVM SFLC GR+REAY V+
Sbjct: 362 TLLTLSNLCRNLCKHGKIDELLEVYRVLSSNEYFSDMESYNVMFSFLCMGGRVREAYEVL 421
Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
QEM++KGLDPD+S YNSL+E CREDLLRPAK+LWD+MF GC GNLKTYNILI KFSE+
Sbjct: 422 QEMRKKGLDPDISMYNSLIEVLCREDLLRPAKRLWDEMFVIGCGGNLKTYNILIGKFSEI 481
Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
G+IE A RLF++MLEKGV PDATT+ LLE LCQET + A +VF K VNHDVMLA++IL
Sbjct: 482 GQIEEATRLFNHMLEKGVTPDATTHRFLLEALCQETMFETAVDVFYKHVNHDVMLAQNIL 541
Query: 544 STFMISLCRR 553
T +++LC +
Sbjct: 542 KTLILNLCGK 551
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543677|ref|XP_002512901.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223547912|gb|EEF49404.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/553 (67%), Positives = 452/553 (81%), Gaps = 3/553 (0%)
Query: 3 MRPATDLATRISQAIISASNRTRPA--RKWTPLLEQTLHQLGLRDSLSPSLVARVINPYL 60
MRPAT+LATRISQA+ISASN P R WTP LE LH++ RDSLSPSLVA+VI+P L
Sbjct: 2 MRPATELATRISQALISASNSRSPTQTRPWTPSLESVLHRIVSRDSLSPSLVAQVIDPCL 61
Query: 61 LTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120
LTHHSLALGFFNWASQQP FTH+ L+Y SILKSLSLSRQ NAI+ VLKQVK +TLDSS
Sbjct: 62 LTHHSLALGFFNWASQQPGFTHNSLTYDSILKSLSLSRQFNAIEYVLKQVKNQNLTLDSS 121
Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
RF+I SLI+G+ TQ A+ VF+E K DIGPEICNSLLAVL SDGY D LK+FDEM
Sbjct: 122 TQRFVISSLIRGRKTQDAYLVFSEAKSRTLDIGPEICNSLLAVLGSDGYFDKGLKVFDEM 181
Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
RGV F+T+GFGVFIW+FC +A L +VL++LD+V K NS+INGSVIAVL++HG C+
Sbjct: 182 LLRGVAFNTVGFGVFIWRFCRDANLSKVLNLLDQV-KEGNSVINGSVIAVLVVHGLCQAS 240
Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
RV EA VL+ELRIR CKPDF+AYRIVAE F+L GS + VLK KRKLGVAPR+NDYR
Sbjct: 241 RVNEALWVLNELRIRNCKPDFMAYRIVAEAFRLSGSSADINKVLKMKRKLGVAPRSNDYR 300
Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG 360
+FIL LI +R + E KE+GEVIV G F I+ DVLNALIGSVSSIDP +A++FF+++I KG
Sbjct: 301 DFILSLIAKRLVLEVKEIGEVIVHGDFPIEVDVLNALIGSVSSIDPNTAMLFFHYIIGKG 360
Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
+PTL TLSNLS+NL + K DE++EVY VLS+ DYF+D+E YNVM SFLC +G++REAY
Sbjct: 361 MLPTLLTLSNLSRNLSRHGKIDEMLEVYNVLSSKDYFSDLEGYNVMFSFLCKAGKIREAY 420
Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
GV+QEMK+KGL D+S YN LMEACCREDLLRPAKKLWD+MF GC N+KTYNILI KF
Sbjct: 421 GVLQEMKKKGLGTDISMYNCLMEACCREDLLRPAKKLWDEMFVVGCGVNIKTYNILIGKF 480
Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
SE+ E+E A+RLFH+MLEKG+AP+ATTYTS+L+GLCQE+ AA E+F+KS+N D LA+
Sbjct: 481 SEIAEVEEAMRLFHHMLEKGIAPNATTYTSILKGLCQESKFDAAIEIFSKSINQDSKLAQ 540
Query: 541 SILSTFMISLCRR 553
+LSTF+I+LC++
Sbjct: 541 RLLSTFIINLCKK 553
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082318|emb|CBI21323.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/551 (66%), Positives = 448/551 (81%), Gaps = 2/551 (0%)
Query: 3 MRP-ATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLL 61
M+P A + A RIS+A+I+ASN++RP R W+P LEQTLH+LG + LSPSLVARVI+P+LL
Sbjct: 1 MKPSAIEAAIRISRALIAASNQSRPTRSWSPSLEQTLHRLGCHELLSPSLVARVIDPFLL 60
Query: 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV 121
HHSLALGFF WASQ+P F H+ +SY S+LKSLS+SRQ NA++ +LK VK KI LDSSV
Sbjct: 61 HHHSLALGFFYWASQKPGFAHTSISYQSVLKSLSISRQFNAVERLLKDVKAQKIVLDSSV 120
Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
YR +I S I GK TQ AF +FNEV +IGP+ CNSL+A LASDG + A ++FDEM
Sbjct: 121 YRSVIASHIIGKRTQNAFLIFNEVSALSREIGPDTCNSLVAALASDGCVVYAQRVFDEMI 180
Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
H GV +++GFGVFIW+FC NA+LG LS+LDEV K S INGS+IA+LIIHG C+ R
Sbjct: 181 HHGVPLNSLGFGVFIWRFCRNAELGTTLSLLDEVIKHA-SEINGSIIALLIIHGLCQVSR 239
Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
V EAF++L+ELR RE KPDF+AYRIV E F+L GS+ E E VLKKKRKLGVAPR NDYRE
Sbjct: 240 VSEAFELLEELRSREYKPDFMAYRIVTEAFRLKGSLAEVEKVLKKKRKLGVAPRENDYRE 299
Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
FI LI ERRI EAKELGEVI++G F I +DVLNAL+GSVSSIDP SA++FF FMI K
Sbjct: 300 FIFVLISERRIPEAKELGEVIINGNFPIGNDVLNALVGSVSSIDPGSAMLFFKFMISKES 359
Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
PTL TLSNL +NLCKR K+DEL+EV+ +LS+ +YF+D+E+Y+VMVSFLC +GR+REAYG
Sbjct: 360 FPTLLTLSNLGRNLCKRGKADELLEVFHILSSRNYFSDLETYSVMVSFLCKAGRVREAYG 419
Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
V+QEMK+ GLDPD+S YN LMEACCREDLLRPAK+LWD+MFASG NLKTYNILI KFS
Sbjct: 420 VLQEMKKNGLDPDISSYNCLMEACCREDLLRPAKRLWDEMFASGYGVNLKTYNILIQKFS 479
Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
E+G+I+ A LF +MLEKGV PDATTYTSLLEGLCQE ++AFEVF KSV DVMLA++
Sbjct: 480 EIGQIQEAQWLFQHMLEKGVNPDATTYTSLLEGLCQEKKFESAFEVFKKSVEQDVMLAQT 539
Query: 542 ILSTFMISLCR 552
IL+TF++ +C+
Sbjct: 540 ILNTFILYICK 550
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451505|ref|XP_002274670.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14080 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/551 (66%), Positives = 448/551 (81%), Gaps = 2/551 (0%)
Query: 3 MRP-ATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLL 61
M+P A + A RIS+A+I+ASN++RP R W+P LEQTLH+LG + LSPSLVARVI+P+LL
Sbjct: 1 MKPSAIEAAIRISRALIAASNQSRPTRSWSPSLEQTLHRLGCHELLSPSLVARVIDPFLL 60
Query: 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV 121
HHSLALGFF WASQ+P F H+ +SY S+LKSLS+SRQ NA++ +LK VK KI LDSSV
Sbjct: 61 HHHSLALGFFYWASQKPGFAHTSISYQSVLKSLSISRQFNAVERLLKDVKAQKIVLDSSV 120
Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
YR +I S I GK TQ AF +FNEV +IGP+ CNSL+A LASDG + A ++FDEM
Sbjct: 121 YRSVIASHIIGKRTQNAFLIFNEVSALSREIGPDTCNSLVAALASDGCVVYAQRVFDEMI 180
Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
H GV +++GFGVFIW+FC NA+LG LS+LDEV K S INGS+IA+LIIHG C+ R
Sbjct: 181 HHGVPLNSLGFGVFIWRFCRNAELGTTLSLLDEVIKHA-SEINGSIIALLIIHGLCQVSR 239
Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
V EAF++L+ELR RE KPDF+AYRIV E F+L GS+ E E VLKKKRKLGVAPR NDYRE
Sbjct: 240 VSEAFELLEELRSREYKPDFMAYRIVTEAFRLKGSLAEVEKVLKKKRKLGVAPRENDYRE 299
Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
FI LI ERRI EAKELGEVI++G F I +DVLNAL+GSVSSIDP SA++FF FMI K
Sbjct: 300 FIFVLISERRIPEAKELGEVIINGNFPIGNDVLNALVGSVSSIDPGSAMLFFKFMISKES 359
Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
PTL TLSNL +NLCKR K+DEL+EV+ +LS+ +YF+D+E+Y+VMVSFLC +GR+REAYG
Sbjct: 360 FPTLLTLSNLGRNLCKRGKADELLEVFHILSSRNYFSDLETYSVMVSFLCKAGRVREAYG 419
Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
V+QEMK+ GLDPD+S YN LMEACCREDLLRPAK+LWD+MFASG NLKTYNILI KFS
Sbjct: 420 VLQEMKKNGLDPDISSYNCLMEACCREDLLRPAKRLWDEMFASGYGVNLKTYNILIQKFS 479
Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
E+G+I+ A LF +MLEKGV PDATTYTSLLEGLCQE ++AFEVF KSV DVMLA++
Sbjct: 480 EIGQIQEAQWLFQHMLEKGVNPDATTYTSLLEGLCQEKKFESAFEVFKKSVEQDVMLAQT 539
Query: 542 ILSTFMISLCR 552
IL+TF++ +C+
Sbjct: 540 ILNTFILYICK 550
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449490189|ref|XP_004158532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/551 (62%), Positives = 432/551 (78%), Gaps = 2/551 (0%)
Query: 3 MRPA-TDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLL 61
MRP +LATR+S+AI+S SN+T PA WTP LEQ LH+LG R L+PSLV++VI+P+LL
Sbjct: 1 MRPHFPELATRLSRAILSISNQTSPAGSWTPSLEQNLHRLGFRQMLNPSLVSQVIDPHLL 60
Query: 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV 121
+HHSLALGFFNWASQQP FTH+ SY+SILKSLSLSR I S+LKQVK KI LD SV
Sbjct: 61 SHHSLALGFFNWASQQPGFTHNSDSYNSILKSLSLSRHFGPIHSLLKQVKTQKIGLDLSV 120
Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
YR +I SLI K T AF VFNEV IG E+CNSLLA LASDG+ ++A K+FDEMS
Sbjct: 121 YRAVIDSLIIAKKTHDAFLVFNEVTSITHIIGSELCNSLLAALASDGFFEHAQKVFDEMS 180
Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
+ + F+T+GFGVFIW+ C N + +VL+M+D R NS INGSVIA LIIHG C+ R
Sbjct: 181 LKSIPFNTLGFGVFIWRICRNTDVVKVLNMIDGARTN-NSDINGSVIATLIIHGLCEASR 239
Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
+EEA +LDEL+ R CKPDF+ Y I+ E F+ +V +RE +LKKKRKLGVAPR NDY+E
Sbjct: 240 LEEASNILDELKNRGCKPDFLTYWILGEAFQSARNVVDREKILKKKRKLGVAPRLNDYKE 299
Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
++ LI RRI EAKELGEVIV G F +D++V N LIGSV+S+DP SAI+FF FM+EKGR
Sbjct: 300 YLFVLIAGRRIREAKELGEVIVKGNFPMDEEVSNVLIGSVASVDPYSAIMFFKFMVEKGR 359
Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
PTL TL NLS+NLCK K+DEL+EV++VL N+YF D++ Y++ +SFLC +G+++EAYG
Sbjct: 360 FPTLLTLRNLSRNLCKHGKTDELLEVFQVLCINNYFNDLDRYHLRISFLCKAGKVKEAYG 419
Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
V+QEMK+ G DPDVSFYNS++EACCREDLLRPA+KLWD+MFA GC GNLKTY+ILI KFS
Sbjct: 420 VLQEMKKNGFDPDVSFYNSVLEACCREDLLRPARKLWDEMFAGGCCGNLKTYSILIQKFS 479
Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
+ +IE AL L+ +ML K V PD YTSLL+GLCQ++ L+AAFEVF+KSV DV LA +
Sbjct: 480 KSNQIEEALVLYSHMLGKNVEPDIAIYTSLLQGLCQDSQLEAAFEVFSKSVEQDVNLAAT 539
Query: 542 ILSTFMISLCR 552
+LSTF++ LC+
Sbjct: 540 LLSTFILCLCK 550
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442054|ref|XP_004138797.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/547 (62%), Positives = 429/547 (78%), Gaps = 2/547 (0%)
Query: 3 MRPA-TDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLL 61
MRP +LATR+S+AI+S SN+T PA WTP LEQ LH+LG R L+PSLV++VI+P+LL
Sbjct: 1 MRPHFPELATRLSRAILSISNQTSPAGSWTPSLEQNLHRLGFRQMLNPSLVSQVIDPHLL 60
Query: 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV 121
+HHSLALGFFNWASQQP FTH+ SY+SILKSLSLSR I S+LKQVK KI LD SV
Sbjct: 61 SHHSLALGFFNWASQQPGFTHNSDSYNSILKSLSLSRHFGPIHSLLKQVKTQKIGLDLSV 120
Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
YR +I SLI K T AF VFNEV IG E+CNSLLA LASDG+ ++A K+FDEMS
Sbjct: 121 YRAVIDSLIIAKKTHDAFLVFNEVTSITHIIGSELCNSLLAALASDGFFEHAQKVFDEMS 180
Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
+ + F+T+GFGVFIW+ C N + +VL+M+D R NS INGSVIA LIIHG C+ R
Sbjct: 181 LKSIPFNTLGFGVFIWRICRNTDVVKVLNMIDGARTN-NSDINGSVIATLIIHGLCEASR 239
Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
+EEA +LDEL+ R CKPDF+ Y I+ E F+ +V +RE +LKKKRKLGVAPR NDY+E
Sbjct: 240 LEEASNILDELKNRGCKPDFLTYWILGEAFQSARNVVDREKILKKKRKLGVAPRLNDYKE 299
Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
++ LI RRI EAKELGEVIV G F +D++V N LIGSV+S+DP SAI+FF FM+EKGR
Sbjct: 300 YLFVLIAGRRIREAKELGEVIVKGNFPMDEEVSNVLIGSVASVDPYSAIMFFKFMVEKGR 359
Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
PTL TL NLS+NLCK K+DEL+EV++VL N+YF D++ Y++ +SFLC +G+++EAYG
Sbjct: 360 FPTLLTLRNLSRNLCKHGKTDELLEVFQVLCINNYFNDLDRYHLRISFLCKAGKVKEAYG 419
Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
V+QEMK+ G DPDVSFYNS++EACCREDLLRPA+KLWD+MFA GC GNLKTY+ILI KFS
Sbjct: 420 VLQEMKKNGFDPDVSFYNSVLEACCREDLLRPARKLWDEMFAGGCCGNLKTYSILIQKFS 479
Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
+ +IE AL L+ +ML K V PD YTSLL+GLCQ++ L+AAFEVF+KSV DV LA +
Sbjct: 480 KSNQIEEALVLYSHMLGKNVEPDIAIYTSLLQGLCQDSQLEAAFEVFSKSVEQDVNLAAT 539
Query: 542 ILSTFMI 548
+LSTF++
Sbjct: 540 LLSTFIL 546
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811525|ref|XP_002873646.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319483|gb|EFH49905.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/550 (57%), Positives = 422/550 (76%), Gaps = 2/550 (0%)
Query: 3 MRPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLT 62
MRPA +LA RI + ++ S +R AR W+P +EQ+LH LG R S+SPSLVARVI+P+LL
Sbjct: 1 MRPAAELAVRIGRELLKVSGSSRSARIWSPSVEQSLHGLGFRHSISPSLVARVIDPFLLN 60
Query: 63 HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122
HHSLALGFFNWA+QQP ++H +SYHSI KSLSLSRQ +A+D++ KQVK NKI LDSSVY
Sbjct: 61 HHSLALGFFNWAAQQPGYSHDSVSYHSIFKSLSLSRQFSAMDALFKQVKSNKILLDSSVY 120
Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182
R +I +L+ G+ +Q AF V E +I P++CN LLA L SD D A K+F +M
Sbjct: 121 RSLIDALVLGRKSQSAFWVLEEALSTGREIHPDVCNRLLAALTSDRCFDYAQKLFVKMRQ 180
Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
RGV +T+GFGV+I FC +++ Q+L ++DEV+K NS INGS+IA+LI+HG CK R
Sbjct: 181 RGVSLNTLGFGVYIGSFCTSSETDQLLRLVDEVKK-ANSNINGSIIALLILHGLCKSSRE 239
Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
+AF +L+ELR +CKPDF+AYRI+AE F + G+++ER+VVLKKKRKLGVAPR++DYR F
Sbjct: 240 MDAFYILEELRNIDCKPDFMAYRIIAEAFVVTGNLYERQVVLKKKRKLGVAPRSSDYRAF 299
Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV 362
IL LI +R+ EAKE+ EVIVSG F +D+D+L+ALIGSVS+IDP SA+ F +M+ G++
Sbjct: 300 ILDLISAKRLMEAKEVAEVIVSGNFPMDNDILDALIGSVSAIDPDSAVEFLVYMVSTGKL 359
Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
P + TLS LSKNLC+ +KSD L++ Y++LS+ YF+D+ESY++M+SFLC +GR+RE Y
Sbjct: 360 PAIRTLSKLSKNLCRHDKSDHLIKAYELLSSKGYFSDLESYSLMISFLCKAGRVREGYTA 419
Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
+ EMK+KGLDPDVS YN+L++ACCR +++RPAKKLWD+MF GC NL TYN+LI K SE
Sbjct: 420 LHEMKKKGLDPDVSLYNALIDACCRAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSE 479
Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-VMLARS 541
GE E +LRLF MLEKG+ PD T Y SL+EGLC+ET L+AA EVF + D +AR
Sbjct: 480 EGEAEESLRLFQKMLEKGIEPDETIYMSLIEGLCKETKLEAALEVFIMCMERDNKTVARR 539
Query: 542 ILSTFMISLC 551
+LS F+++LC
Sbjct: 540 LLSAFVLNLC 549
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30684737|ref|NP_196912.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635762|sp|Q9FMU2.2|PP380_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g14080 gi|332004602|gb|AED91985.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/550 (56%), Positives = 426/550 (77%), Gaps = 2/550 (0%)
Query: 3 MRPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLT 62
MRPAT+LA RI + ++ S +R AR W+PL+EQ+LH LG R S+SPSLVARVI+P+LL
Sbjct: 1 MRPATELAVRIGRELLKVSGSSRAARIWSPLIEQSLHGLGFRHSISPSLVARVIDPFLLN 60
Query: 63 HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122
HHSLALGFFNWA+QQP ++H +SYHSI KSLSLSRQ +A+D++ KQVK NKI LDSSVY
Sbjct: 61 HHSLALGFFNWAAQQPGYSHDSISYHSIFKSLSLSRQFSAMDALFKQVKSNKILLDSSVY 120
Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182
R +I +L+ G+ Q AF V E ++I P++CN LLA L SDG D A K+F +M H
Sbjct: 121 RSLIDTLVLGRKAQSAFWVLEEAFSTGQEIHPDVCNRLLAGLTSDGCYDYAQKLFVKMRH 180
Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
+GV +T+GFGV+I FC +++ Q+L ++DEV+K N INGS+IA+LI+H CK R
Sbjct: 181 KGVSLNTLGFGVYIGWFCRSSETNQLLRLVDEVKK-ANLNINGSIIALLILHSLCKCSRE 239
Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
+AF +L+ELR +CKPDF+AYR++AE F + G+++ER+VVLKKKRKLGVAPR++DYR F
Sbjct: 240 MDAFYILEELRNIDCKPDFMAYRVIAEAFVVTGNLYERQVVLKKKRKLGVAPRSSDYRAF 299
Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV 362
IL LI +R+ EAKE+ EVIVSGKF +D+D+L+ALIGSVS++DP SA+ F +M+ G++
Sbjct: 300 ILDLISAKRLTEAKEVAEVIVSGKFPMDNDILDALIGSVSAVDPDSAVEFLVYMVSTGKL 359
Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
P + TLS LSKNLC+ +KSD L++ Y++LS+ YF++++SY++M+SFLC +GR+RE+Y
Sbjct: 360 PAIRTLSKLSKNLCRHDKSDHLIKAYELLSSKGYFSELQSYSLMISFLCKAGRVRESYTA 419
Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
+QEMK++GL PDVS YN+L+EACC+ +++RPAKKLWD+MF GC NL TYN+LI K SE
Sbjct: 420 LQEMKKEGLAPDVSLYNALIEACCKAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSE 479
Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-VMLARS 541
GE E +LRLF MLE+G+ PD T Y SL+EGLC+ET ++AA EVF K + D + R
Sbjct: 480 EGEAEESLRLFDKMLERGIEPDETIYMSLIEGLCKETKIEAAMEVFRKCMERDHKTVTRR 539
Query: 542 ILSTFMISLC 551
+LS F+++LC
Sbjct: 540 VLSEFVLNLC 549
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9757789|dbj|BAB08287.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/550 (56%), Positives = 426/550 (77%), Gaps = 2/550 (0%)
Query: 3 MRPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLT 62
MRPAT+LA RI + ++ S +R AR W+PL+EQ+LH LG R S+SPSLVARVI+P+LL
Sbjct: 1 MRPATELAVRIGRELLKVSGSSRAARIWSPLIEQSLHGLGFRHSISPSLVARVIDPFLLN 60
Query: 63 HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122
HHSLALGFFNWA+QQP ++H +SYHSI KSLSLSRQ +A+D++ KQVK NKI LDSSVY
Sbjct: 61 HHSLALGFFNWAAQQPGYSHDSISYHSIFKSLSLSRQFSAMDALFKQVKSNKILLDSSVY 120
Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182
R +I +L+ G+ Q AF V E ++I P++CN LLA L SDG D A K+F +M H
Sbjct: 121 RSLIDTLVLGRKAQSAFWVLEEAFSTGQEIHPDVCNRLLAGLTSDGCYDYAQKLFVKMRH 180
Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
+GV +T+GFGV+I FC +++ Q+L ++DEV+K N INGS+IA+LI+H CK R
Sbjct: 181 KGVSLNTLGFGVYIGWFCRSSETNQLLRLVDEVKK-ANLNINGSIIALLILHSLCKCSRE 239
Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
+AF +L+ELR +CKPDF+AYR++AE F + G+++ER+VVLKKKRKLGVAPR++DYR F
Sbjct: 240 MDAFYILEELRNIDCKPDFMAYRVIAEAFVVTGNLYERQVVLKKKRKLGVAPRSSDYRAF 299
Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV 362
IL LI +R+ EAKE+ EVIVSGKF +D+D+L+ALIGSVS++DP SA+ F +M+ G++
Sbjct: 300 ILDLISAKRLTEAKEVAEVIVSGKFPMDNDILDALIGSVSAVDPDSAVEFLVYMVSTGKL 359
Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
P + TLS LSKNLC+ +KSD L++ Y++LS+ YF++++SY++M+SFLC +GR+RE+Y
Sbjct: 360 PAIRTLSKLSKNLCRHDKSDHLIKAYELLSSKGYFSELQSYSLMISFLCKAGRVRESYTA 419
Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
+QEMK++GL PDVS YN+L+EACC+ +++RPAKKLWD+MF GC NL TYN+LI K SE
Sbjct: 420 LQEMKKEGLAPDVSLYNALIEACCKAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSE 479
Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-VMLARS 541
GE E +LRLF MLE+G+ PD T Y SL+EGLC+ET ++AA EVF K + D + R
Sbjct: 480 EGEAEESLRLFDKMLERGIEPDETIYMSLIEGLCKETKIEAAMEVFRKCMERDHKTVTRR 539
Query: 542 ILSTFMISLC 551
+LS F+++LC
Sbjct: 540 VLSEFVLNLC 549
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 556 | ||||||
| TAIR|locus:2174633 | 634 | AT5G14080 [Arabidopsis thalian | 0.985 | 0.864 | 0.554 | 7.4e-169 | |
| TAIR|locus:2174008 | 974 | AT5G61990 "AT5G61990" [Arabido | 0.832 | 0.475 | 0.248 | 4.4e-44 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.933 | 0.710 | 0.248 | 1e-36 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.861 | 0.635 | 0.230 | 3.7e-35 | |
| TAIR|locus:2119747 | 660 | EMB1025 "embryo defective 1025 | 0.892 | 0.751 | 0.234 | 9.8e-35 | |
| TAIR|locus:2084978 | 602 | AT3G04760 [Arabidopsis thalian | 0.748 | 0.691 | 0.267 | 4.2e-31 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.75 | 0.558 | 0.239 | 3e-30 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.663 | 0.596 | 0.260 | 4.5e-30 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.776 | 0.722 | 0.243 | 5.1e-30 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.877 | 0.533 | 0.247 | 2.5e-29 |
| TAIR|locus:2174633 AT5G14080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1642 (583.1 bits), Expect = 7.4e-169, P = 7.4e-169
Identities = 305/550 (55%), Positives = 417/550 (75%)
Query: 3 MRPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLT 62
MRPAT+LA RI + ++ S +R AR W+PL+EQ+LH LG R S+SPSLVARVI+P+LL
Sbjct: 1 MRPATELAVRIGRELLKVSGSSRAARIWSPLIEQSLHGLGFRHSISPSLVARVIDPFLLN 60
Query: 63 HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122
HHSLALGFFNWA+QQP ++H +SYHSI KSLSLSRQ +A+D++ KQVK NKI LDSSVY
Sbjct: 61 HHSLALGFFNWAAQQPGYSHDSISYHSIFKSLSLSRQFSAMDALFKQVKSNKILLDSSVY 120
Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182
R +I +L+ G+ Q AF V E ++I P++CN LLA L SDG D A K+F +M H
Sbjct: 121 RSLIDTLVLGRKAQSAFWVLEEAFSTGQEIHPDVCNRLLAGLTSDGCYDYAQKLFVKMRH 180
Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
+GV +T+GFGV+I FC +++ Q+L ++DEV+K N INGS+IA+LI+H CK R
Sbjct: 181 KGVSLNTLGFGVYIGWFCRSSETNQLLRLVDEVKKA-NLNINGSIIALLILHSLCKCSRE 239
Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
+AF +L+ELR +CKPDF+AYR++AE F + G+++ER+VVLKKKRKLGVAPR++DYR F
Sbjct: 240 MDAFYILEELRNIDCKPDFMAYRVIAEAFVVTGNLYERQVVLKKKRKLGVAPRSSDYRAF 299
Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV 362
IL LI +R+ EAKE+ EVIVSGKF +D+D+L+ALIGSVS++DP SA+ F +M+ G++
Sbjct: 300 ILDLISAKRLTEAKEVAEVIVSGKFPMDNDILDALIGSVSAVDPDSAVEFLVYMVSTGKL 359
Query: 363 PXXXXXXXXXXXXCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
P C+ +KSD L++ Y++LS+ YF++++SY++M+SFLC +GR+RE+Y
Sbjct: 360 PAIRTLSKLSKNLCRHDKSDHLIKAYELLSSKGYFSELQSYSLMISFLCKAGRVRESYTA 419
Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
+QEMK++GL PDVS YN+L+EACC+ +++RPAKKLWD+MF GC NL TYN+LI K SE
Sbjct: 420 LQEMKKEGLAPDVSLYNALIEACCKAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSE 479
Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-VMLARS 541
GE E +LRLF MLE+G+ PD T Y SL+EGLC+ET ++AA EVF K + D + R
Sbjct: 480 EGEAEESLRLFDKMLERGIEPDETIYMSLIEGLCKETKIEAAMEVFRKCMERDHKTVTRR 539
Query: 542 ILSTFMISLC 551
+LS F+++LC
Sbjct: 540 VLSEFVLNLC 549
|
|
| TAIR|locus:2174008 AT5G61990 "AT5G61990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 444 (161.4 bits), Expect = 4.4e-44, Sum P(2) = 4.4e-44
Identities = 117/470 (24%), Positives = 230/470 (48%)
Query: 86 SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
+Y ++ L +++ S+L ++ ++LD+ Y +I L++G+N A + +E+
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM 338
Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
+ +I P + + + V++ +G ++ A +FD M G+ + I +C +
Sbjct: 339 VSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNV 398
Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
Q +L E++KR N +I+ ++ G C ++ A+ ++ E+ C+P+ + Y
Sbjct: 399 RQGYELLVEMKKR-NIVISPYTYGT-VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYT 456
Query: 266 IVAEEFKLMGSVFEREV-VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE-LGEVIV 323
+ + F L S F + VLK+ ++ G+AP Y I+GL +R+ EA+ L E++
Sbjct: 457 TLIKTF-LQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515
Query: 324 SGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPXXXXXXXXXXXXCKRNKSD 382
+G + A I G + + + SA + M E G +P CK+ K
Sbjct: 516 NG-LKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVI 574
Query: 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442
E Y+ + D ++Y V+++ L + ++ +A + +EM+ KG+ PDV Y L+
Sbjct: 575 EACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLI 634
Query: 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502
+ ++ A ++D+M G + N+ YN+L+ F GEIE A L M KG+
Sbjct: 635 NGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLH 694
Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
P+A TY ++++G C+ +L AF +F++ ++ + +T + CR
Sbjct: 695 PNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744
|
|
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 402 (146.6 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 133/536 (24%), Positives = 238/536 (44%)
Query: 24 TRPARKWTPLLEQTLHQLGLRDS---LSPSLVARVINPYLLTHHSLALGFFNWASQQPNF 80
T A +W LL+ LR+S ++P + +++ L + S ++ F+W Q +
Sbjct: 51 TDSANEWEKLLKP-FDLDSLRNSFHKITPFQLYKLLE--LPLNVSTSMELFSWTGSQNGY 107
Query: 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL----IQGKNTQ 136
HS Y ++ L + + ID +L Q+K I S++ I+ G+ T+
Sbjct: 108 RHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTR 167
Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
+ N ++CE N +L +L S A +F +M R + + FGV +
Sbjct: 168 LMLEMRNV--YSCEPTFKSY-NVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVM 224
Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
FC ++ LS+L ++ K + + SVI +IH K RV EA ++L+E+ +
Sbjct: 225 KAFCAVNEIDSALSLLRDMTK--HGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMG 282
Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
C PD + V + E ++ + G AP Y + GL R+ AK
Sbjct: 283 CVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAK 342
Query: 317 ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPXXXXXXXXXXXXC 376
+L I + I + +++ + + +D A++ + + G VP
Sbjct: 343 DLFYRIPKPEIVIFNTLIHGFV-THGRLDDAKAVLS-DMVTSYGIVPDVCTYNSLIYGYW 400
Query: 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436
K +EV + ++ SY ++V C G++ EAY V+ EM GL P+
Sbjct: 401 KEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTV 460
Query: 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496
+N L+ A C+E + A +++ +M GC ++ T+N LIS EV EI+ AL L +M
Sbjct: 461 GFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDM 520
Query: 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
+ +GV + TY +L+ + ++ A ++ N+ V L ++ + LCR
Sbjct: 521 ISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCR 576
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 396 (144.5 bits), Expect = 3.7e-35, P = 3.7e-35
Identities = 115/498 (23%), Positives = 231/498 (46%)
Query: 65 SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
S AL FN AS++PNF+ P Y IL L S + + +L+ +K ++ + +S +
Sbjct: 64 SAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLI 123
Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PE--ICNSLLAVLASDGYIDNALKMFD-- 178
+I S Q + + SV V + ++ G P+ N +L +L DG N+LK+ +
Sbjct: 124 LIESYAQFELQDEILSV---VDWMIDEFGLKPDTHFYNRMLNLLV-DG---NSLKLVEIS 176
Query: 179 --EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
+MS G++ F V I C +L + ML+++ ++ ++ G+
Sbjct: 177 HAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSY--GLVPDEKTFTTVMQGY 234
Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER-EVVLKKKRKLGVAPR 295
+ ++ A ++ +++ C ++ ++ F G V + + + + G P
Sbjct: 235 IEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPD 294
Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFN 354
+ + GL + A E+ +V++ + D N++I + + + + A+ +
Sbjct: 295 QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLD 354
Query: 355 FMIEKGRVPXXXXXXXXXXXXCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
MI + P CK N+ +E E+ +VL++ D+ ++N ++ LC +
Sbjct: 355 QMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTR 414
Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
R A + +EM+ KG +PD YN L+++ C + L A + QM SGC+ ++ TYN
Sbjct: 415 NHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYN 474
Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
LI F + + A +F M GV+ ++ TY +L++GLC+ ++ A ++ ++ +
Sbjct: 475 TLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME 534
Query: 535 DVMLARSILSTFMISLCR 552
+ ++ + CR
Sbjct: 535 GQKPDKYTYNSLLTHFCR 552
|
|
| TAIR|locus:2119747 EMB1025 "embryo defective 1025" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 9.8e-35, P = 9.8e-35
Identities = 121/516 (23%), Positives = 245/516 (47%)
Query: 46 SLSPSLVARVI-NPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAID 104
S+SP+ V+ NP ++ F A + +F + S+++S + S ++++
Sbjct: 41 SVSPNPSMEVVENPL---EAPISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVE 97
Query: 105 SVLKQVKV-NKITLDSSVYRFIIPSLIQGKN--TQKAFSVFNEV--KFNCEDIGPEICNS 159
+L ++++ N++ ++ S FI+ GK KA +F+ + +F C+ + NS
Sbjct: 98 KLLSRIRLENRVIIERS---FIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKR-SVKSFNS 153
Query: 160 LLAVLASDGYIDNALKMFDEM--SHRGVEFSTIG--FGVFIWKFCENAKLGQVLSMLDEV 215
+L V+ ++G L+ +D + S+ + S G F + I C+ + + + + +
Sbjct: 154 VLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGM 213
Query: 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
+R+ + +G L+ G CK +R++EA +LDE++ C P + Y ++ + G
Sbjct: 214 PERK-CLPDGYTYCTLM-DGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKG 271
Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335
+ ++ G P Y I GL ++ ++ +A L E +VS K +D
Sbjct: 272 DLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYG 331
Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPXXXXXXXXXXXXCKRNKSDELVEVYKVLSAN 394
LI G V A+ + M E+G K K++E + +++ ++
Sbjct: 332 TLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEK 391
Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
++ Y+V+V LC G+ EA ++ M G P+ Y+SLM+ + L A
Sbjct: 392 GCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEA 451
Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
++W +M +GCS N Y++LI VG ++ A+ ++ ML G+ PD Y+S+++G
Sbjct: 452 VQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKG 511
Query: 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
LC ++ AA +++++ + + ++ + T+ I L
Sbjct: 512 LCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILL 547
|
|
| TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 113/423 (26%), Positives = 185/423 (43%)
Query: 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALK 175
D Y +I + A V + ++ +D P+ N ++ L S G +D ALK
Sbjct: 157 DVFAYNALINGFCKMNRIDDATRVLDRMR--SKDFSPDTVTYNIMIGSLCSRGKLDLALK 214
Query: 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235
+ +++ + + I + + I + + L ++DE+ R + II G
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSR--GLKPDMFTYNTIIRG 272
Query: 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295
CK V+ AF+++ L ++ C+PD I+Y I+ G E E ++ K P
Sbjct: 273 MCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 332
Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS-AIVFFN 354
Y I L + +I EA L +++ T D + LI + AI F
Sbjct: 333 VVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLE 392
Query: 355 FMIEKGRVPXXXXXXXXXXXXCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
MI G +P CK K+D+ +E++ L + SYN M S L +SG
Sbjct: 393 TMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSG 452
Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
A +I EM G+DPD YNS++ CRE ++ A +L M + ++ TYN
Sbjct: 453 DKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYN 512
Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
I++ F + IE A+ + +M+ G P+ TTYT L+EG+ A E+ N V
Sbjct: 513 IVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRI 572
Query: 535 DVM 537
D +
Sbjct: 573 DAI 575
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 359 (131.4 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 101/421 (23%), Positives = 192/421 (45%)
Query: 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL-AVLASDGYIDNALKMF 177
SSV+ ++ S + KA S+ + + + G N++L A + S I A +F
Sbjct: 134 SSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVF 193
Query: 178 DEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237
EM V + + + I FC + L++ D++ + + V +I G+C
Sbjct: 194 KEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETK--GCLPNVVTYNTLIDGYC 251
Query: 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN 297
K +++++ FK+L + ++ +P+ I+Y +V G + E VL + + G +
Sbjct: 252 KLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEV 311
Query: 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFM 356
Y I G E +A + ++ T +LI S+ + A+ F + M
Sbjct: 312 TYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQM 371
Query: 357 IEKGRVPXXXXXXXXXXXXCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416
+G P ++ +E V + ++ N + + +YN +++ C +G++
Sbjct: 372 RVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKM 431
Query: 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476
+A V+++MK KGL PDV Y++++ CR + A ++ +M G + TY+ L
Sbjct: 432 EDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSL 491
Query: 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536
I F E + A L+ ML G+ PD TYT+L+ C E +L+ A ++ N+ V V
Sbjct: 492 IQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGV 551
Query: 537 M 537
+
Sbjct: 552 L 552
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 355 (130.0 bits), Expect = 4.5e-30, P = 4.5e-30
Identities = 98/376 (26%), Positives = 170/376 (45%)
Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
++L+ L G + AL + D M G + + +G + + C K G LD RK
Sbjct: 179 STLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLC---KSGNSALALDLFRK 235
Query: 218 RENSMINGSVIAV-LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276
E I SV+ ++I CK ++A + +E+ ++ K D + Y + G
Sbjct: 236 MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGK 295
Query: 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL-GEVIVSGKFTIDDDVLN 335
+ +L++ + P + I + E ++ EAKEL E+I G D N
Sbjct: 296 WDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG-IAPDTITYN 354
Query: 336 ALI-GSVSSIDPRSAIVFFNFMIEKGRVPXXXXXXXXXXXXCKRNKSDELVEVYKVLSAN 394
+LI G A F+ M+ KG P CK + D+ + +++ +S+
Sbjct: 355 SLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSK 414
Query: 395 DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454
+ +YN +V C SG+L A + QEM +G+ P V Y L++ C L A
Sbjct: 415 GLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKA 474
Query: 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514
+++++M S + + YNI+I +++ A LF ++ +KGV PD TY ++ G
Sbjct: 475 LEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGG 534
Query: 515 LCQETNLQAAFEVFNK 530
LC++ +L A +F K
Sbjct: 535 LCKKGSLSEADMLFRK 550
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 5.1e-30, P = 5.1e-30
Identities = 113/464 (24%), Positives = 210/464 (45%)
Query: 87 YHSILKSLSLSRQINAIDSVLKQVKVNKIT-----LDSSVYRF----IIP--SLIQG--- 132
Y S+ S +L + + + + + V+ ++ L++ VY IIP +LI+G
Sbjct: 91 YSSVNSSFALE-DVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCR 149
Query: 133 -KNTQKAFSVFNEVKFNCEDIGPEIC--NSLLAVLASDGYIDNALKMFDEMSHRGVEFST 189
T+KA + E+ + P++ N +++ G I+NAL + D MS V
Sbjct: 150 LGKTRKAAKIL-EILEGSGAV-PDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDV 204
Query: 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVL 249
+ + + C++ KL Q + +LD + +R+ + ++I C+ V A K+L
Sbjct: 205 VTYNTILRSLCDSGKLKQAMEVLDRMLQRD--CYPDVITYTILIEATCRDSGVGHAMKLL 262
Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
DE+R R C PD + Y ++ G + E L G P + + +
Sbjct: 263 DEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCST 322
Query: 310 RRICEAKEL-GEVIVSGKFTIDDDVLNALIGSV--SSIDPRSAIVFFNFMIEKGRVPXXX 366
R +A++L +++ G F+ N LI + + R AI M + G P
Sbjct: 323 GRWMDAEKLLADMLRKG-FSPSVVTFNILINFLCRKGLLGR-AIDILEKMPQHGCQPNSL 380
Query: 367 XXXXXXXXXCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426
CK K D +E + + + + D+ +YN M++ LC G++ +A ++ ++
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQL 440
Query: 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486
KG P + YN++++ + A KL D+M A + TY+ L+ S G++
Sbjct: 441 SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKV 500
Query: 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQ--ETNLQAAFEVF 528
+ A++ FH G+ P+A T+ S++ GLC+ +T+ F VF
Sbjct: 501 DEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVF 544
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 353 (129.3 bits), Expect = 2.5e-29, P = 2.5e-29
Identities = 126/510 (24%), Positives = 220/510 (43%)
Query: 46 SLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDS 105
++SPS V+ + + L AL F +W SQ P + HS SY S+L L + + +
Sbjct: 87 AISPSHVSSLFS--LDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFK 144
Query: 106 V-LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC-NSLLAV 163
+ L +K + DS + L + N + F E+K+ IG C N+LL
Sbjct: 145 IRLLMIK----SCDSVGDALYVLDLCRKMNKDERF----ELKYKLI-IG---CYNTLLNS 192
Query: 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223
LA G +D +++ EM V + + + +C KLG V V K + +
Sbjct: 193 LARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYC---KLGNVEEANQYVSKIVEAGL 249
Query: 224 NGSVIAVL-IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282
+ +I G+C+ K ++ AFKV +E+ ++ C+ + +AY + + + E
Sbjct: 250 DPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMD 309
Query: 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV- 341
+ K + P Y I L R EA L + + + LI S+
Sbjct: 310 LFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLC 369
Query: 342 SSIDPRSAIVFFNFMIEKGRVPXXXXXXXXXXXXCKRNKSDELVEVYKVLSANDYFTDME 401
S A M+EKG +P CKR ++ V+V +++ + +
Sbjct: 370 SQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTR 429
Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
+YN ++ C S + +A GV+ +M + + PDV YNSL++ CR A +L M
Sbjct: 430 TYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLM 488
Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
G + TY +I + +E A LF ++ +KGV P+ YT+L++G C+ +
Sbjct: 489 NDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKV 548
Query: 522 QAAFEVFNKSVNHDVMLARSILSTFMISLC 551
A + K ++ + + + + LC
Sbjct: 549 DEAHLMLEKMLSKNCLPNSLTFNALIHGLC 578
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FMU2 | PP380_ARATH | No assigned EC number | 0.5690 | 0.9856 | 0.8643 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 556 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.001 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.002 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 5e-14
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
++ TYN LI + + G++E AL+LF+ M ++G+ P+ TY+ L++GLC+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 4e-12
Identities = 68/305 (22%), Positives = 119/305 (39%), Gaps = 21/305 (6%)
Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIV------AEEFKLMGSVFEREVVLKKKRKL 290
+ ++ A +VL ++ K D Y + + + M VF V
Sbjct: 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA------ 501
Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGE--VIVSGKFTIDDDVLNALI---GSVSSID 345
GV + + I G ++ AK G ++ S D V NALI G ++D
Sbjct: 502 GVEANVHTFGALIDGCARAGQV--AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559
Query: 346 PRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
R+ V E + P T+ L K + D EVY+++ + E Y
Sbjct: 560 -RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618
Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
+ V+ G A + +MK+KG+ PD F+++L++ L A ++
Sbjct: 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678
Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
G +Y+ L+ S + AL L+ ++ + P +T +L+ LC+ L A
Sbjct: 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738
Query: 525 FEVFN 529
EV +
Sbjct: 739 LEVLS 743
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 6e-11
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
+YN ++ C G++ EA + EMK++G+ P+V Y+ L++ C+
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 1/161 (0%)
Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
M +KG P S L D+ E+ + SY+ ++ +
Sbjct: 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699
Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
++A + +++K L P VS N+L+ A C + L A ++ +M G N TY+I
Sbjct: 700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759
Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
L+ + + L L E G+ P+ + GLC
Sbjct: 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 4e-08
Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 10/158 (6%)
Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT-DMESYNVMVSFLCTSGRL 416
+ R +S S + K L + E +E++++L A FT +Y+ +V +
Sbjct: 81 TQIRKSGVSLCSQIEK-LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSI 139
Query: 417 REAYGVIQEMKRKGLDPDVSFYNS--LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
R V ++ G +PD N LM C +L A++L+D+M NL ++
Sbjct: 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC--GMLIDARRLFDEMPER----NLASWG 193
Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
+I + G A LF M E G + T+ +L
Sbjct: 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 40/187 (21%), Positives = 73/187 (39%), Gaps = 41/187 (21%)
Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
CK D+ +EV+ + D S+ +++ L + R EA ++M L P+
Sbjct: 437 CKC--IDKALEVFHNIPEKDVI----SWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNS 489
Query: 436 SFYNSLMEACCREDLLRPAKKL--------------------------------WDQMFA 463
+ + AC R L K++ W+Q
Sbjct: 490 VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-- 547
Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
+ ++ ++NIL++ + G+ A+ LF+ M+E GV PD T+ SLL + +
Sbjct: 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607
Query: 524 AFEVFNK 530
E F+
Sbjct: 608 GLEYFHS 614
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 6e-07
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
+I G+CK +VEEA K+ +E++ R KP+ Y I+
Sbjct: 9 LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 55/259 (21%), Positives = 105/259 (40%), Gaps = 21/259 (8%)
Query: 303 ILGLIVERRICEAKELGEVI-VSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKG 360
I L+ R EA EL E++ FT+ +AL+ + ++ R + + G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME-----SYNVMVSFLCTSGR 415
P ++ + L K L++ ++ F +M S+ ++ L +G
Sbjct: 154 FEPDQYMMNRV---LLMHVKCGMLIDARRL------FDEMPERNLASWGTIIGGLVDAGN 204
Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
REA+ + +EM G D + + ++ A R ++L + +G G+
Sbjct: 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264
Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
LI +S+ G+IE A +F M EK + S+L G + A ++ + +
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 536 VMLARSILSTFMISLCRRV 554
V + + S MI + R+
Sbjct: 321 VSIDQFTFSI-MIRIFSRL 338
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 41/154 (26%), Positives = 80/154 (51%), Gaps = 14/154 (9%)
Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKG-LDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
YN ++ GR+++ ++++M+++G LD D ++ +AC ++ ++ A + +
Sbjct: 377 YNRLLR----DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432
Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
L T+N+L+S + +I+GALR+ + E G+ D YT+L+ + +
Sbjct: 433 RNP----TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 522 QAAFEVFNKSVNHDVMLARSILSTF--MISLCRR 553
A FEVF++ VN V + + TF +I C R
Sbjct: 489 DAMFEVFHEMVNAGV---EANVHTFGALIDGCAR 519
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 35/167 (20%)
Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
R PTLST +N+++S +S + A
Sbjct: 433 RNPTLST-----------------------------------FNMLMSVCASSQDIDGAL 457
Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
V++ ++ GL D Y +L+ C + + +++ +M +G N+ T+ LI
Sbjct: 458 RVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC 517
Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
+ G++ A + M K V PD + +L+ Q + AF+V
Sbjct: 518 ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDV 564
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 2e-06
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
KG+ PD TY +L++GLC+ + A E+ ++
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
TYN LI + G +E AL LF M E+G+ PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
D+ S+N++++ G+ A + M G++PD + SL+ AC R ++ + +
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612
Query: 459 DQMFAS-GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK-GVAPDATTYTSLLEGLC 516
M + NLK Y ++ G++ A +N + K + PD + +LL C
Sbjct: 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEA----YNFINKMPITPDPAVWGALLNA-C 667
Query: 517 Q--------ETNLQAAFEVFNKSVNHDVML 538
+ E Q FE+ SV + ++L
Sbjct: 668 RIHRHVELGELAAQHIFELDPNSVGYYILL 697
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
+YN ++ LC +GR+ EA + +EMK +G++PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 39/149 (26%)
Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC--------RE-- 448
D+ S+NV+V +G EA + M G+ PDV + ++ C RE
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210
Query: 449 ------------DLL-------------RPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
D++ A+ ++D+M C ++N +IS + E
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCI----SWNAMISGYFEN 266
Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLL 512
GE L LF M E V PD T TS++
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVI 295
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPD 260
+I G CK RVEEA ++ E++ R +PD
Sbjct: 6 LIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGV 501
TYN LIS + + G++E AL LF M EKGV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 2e-04
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
L+TYN L+ ++ G+ + AL + M G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 54/223 (24%), Positives = 101/223 (45%), Gaps = 33/223 (14%)
Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ-VLSMLDEVR- 216
+L+ V G +D A ++ + +G++ T+ + + C NAK + L + ++++
Sbjct: 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM-GACSNAKNWKKALELYEDIKS 712
Query: 217 ---KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI--VAEEF 271
+ S +N +I C+G ++ +A +VL E++ P+ I Y I VA E
Sbjct: 713 IKLRPTVSTMNA------LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766
Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS---GKFT 328
K V +L + ++ G+ P R I GL + RR +A LGE +VS G+
Sbjct: 767 KDDADVGLD--LLSQAKEDGIKPNLVMCRC-ITGLCL-RRFEKACALGEPVVSFDSGRPQ 822
Query: 329 IDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
I++ + A++ + I G +PT+ LS +
Sbjct: 823 IENKWTS------------WALMVYRETISAGTLPTMEVLSQV 853
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 22/107 (20%)
Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES------ 402
A+ FN M+E G P T +L LC ++S + + +YF ME
Sbjct: 573 AVELFNRMVESGVNPDEVTFISL---LCACSRSGMVTQGL------EYFHSMEEKYSITP 623
Query: 403 ----YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
Y +V L +G+L EAY I +M + PD + + +L+ AC
Sbjct: 624 NLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNAC 667
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
+YN ++S C +G+L EA + +EMK KG+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 6e-04
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 232 IIHGFCKGKRVEEAFKVLDELR 253
+I G C+ RV+EA ++LDE+
Sbjct: 13 LIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 12/56 (21%)
Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL------STFMISLCR 552
PD TY +L++G C++ ++ A ++FN+ M R I S + LC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNE------MKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 31/134 (23%)
Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK------------- 456
LC+ G+L +A +++ M+ + D Y +L C + + +
Sbjct: 61 LCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLG 120
Query: 457 ----------------LWD--QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
L +F +L ++N+L+ +++ G + AL L+H ML
Sbjct: 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 499 KGVAPDATTYTSLL 512
GV PD T+ +L
Sbjct: 181 AGVRPDVYTFPCVL 194
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 7e-04
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
KGL PDV YN+L++ CR + A +L D+M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 9e-04
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
N+L+ G ++ ALK+F+EM RG++ + + + I C
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
E KV S + D S+ M+S +G +A M++ + PD S++ AC
Sbjct: 341 EAEKVFSRME-TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
L KL + G + N LI +S+ I+ AL +FHN+ EK D
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DV 455
Query: 506 TTYTSLLEGLC 516
++TS++ GL
Sbjct: 456 ISWTSIIAGLR 466
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 11/188 (5%)
Query: 327 FTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN-LCKRNKSDEL 384
F +D DV+NALI V D SA + F+ M + + + +S +N C + EL
Sbjct: 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGEC--LEGLEL 275
Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
+ LS + + S L RE +G + + G DVS NSL++
Sbjct: 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV---KTGFAVDVSVCNSLIQM 332
Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
A+K++ +M + ++ +IS + + G + AL + M + V+PD
Sbjct: 333 YLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388
Query: 505 ATTYTSLL 512
T S+L
Sbjct: 389 EITIASVL 396
|
Length = 857 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 556 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.69 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.65 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.65 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.65 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.53 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.52 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.5 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.5 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.49 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.46 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.44 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.42 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.41 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.39 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.36 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.36 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.32 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.31 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.29 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.29 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.29 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.27 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.27 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.26 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.26 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.26 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.26 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.25 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.23 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.21 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.2 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.17 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.09 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.07 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.07 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.07 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.04 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.01 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.96 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.95 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.93 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.92 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.9 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.87 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.86 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.83 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.82 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.82 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.8 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.78 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.76 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.74 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.7 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.69 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.68 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.67 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.62 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.62 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.6 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.6 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.59 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.58 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.57 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.56 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.52 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.52 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.51 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.5 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.49 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.48 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.48 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.45 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.45 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.42 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.42 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.41 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.4 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.39 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.36 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.3 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.28 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.28 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.27 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.26 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.26 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.23 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.22 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.22 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.16 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.16 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.1 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.06 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.05 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.03 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.0 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.0 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.98 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.95 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.89 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.86 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.84 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.84 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.8 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.8 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.76 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.71 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.7 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.69 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.63 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.61 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.6 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.59 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.57 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.57 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.55 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.55 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.54 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.52 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.52 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.5 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.5 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.47 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.46 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.45 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.43 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.42 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.42 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.41 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.4 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.39 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.39 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.37 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.37 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.35 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.35 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.28 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.28 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.23 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.23 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.22 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.22 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.18 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.18 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.15 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.14 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.12 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.11 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.1 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.08 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.07 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.04 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.04 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.01 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.0 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.96 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.94 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.81 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.79 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.71 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.56 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.52 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.51 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.51 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.51 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.49 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.49 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.42 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.41 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.4 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.37 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.37 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.34 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.32 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.28 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.25 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.24 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.2 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.2 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.17 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.11 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.07 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.06 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.01 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.94 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.88 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.81 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.8 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.75 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.72 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.7 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.6 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.58 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.57 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.5 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.44 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.24 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.23 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.09 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.08 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.99 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.98 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.93 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.91 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.7 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.63 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.52 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.51 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.46 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.39 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.38 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.22 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.21 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.13 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.12 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.95 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.9 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.86 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 93.83 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.65 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.64 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.61 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.51 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.31 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.19 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.17 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.55 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.54 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.25 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.86 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.81 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.76 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.57 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.36 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.12 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.87 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 90.68 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.42 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.33 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 90.09 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.74 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.57 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.39 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.27 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.21 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 89.2 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.16 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.08 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.02 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.0 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.82 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.63 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.51 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.14 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 87.89 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 87.84 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 87.77 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.59 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 87.52 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.46 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.35 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 87.07 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.06 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.96 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.83 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 86.46 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 86.39 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.24 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.8 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.08 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 84.83 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.54 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.09 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.86 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 83.79 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.73 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 83.24 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 82.86 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.33 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 82.23 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 82.04 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 80.9 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 80.71 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-69 Score=559.34 Aligned_cols=497 Identities=17% Similarity=0.186 Sum_probs=466.3
Q ss_pred HHHHHHhhhhhc-cChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHH
Q 008727 50 SLVARVINPYLL-THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPS 128 (556)
Q Consensus 50 ~~~~~~l~~~~~-~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 128 (556)
..+..+++.+.+ ++...|+++|+++....-+.++...++.++..|.+.|.+++|..+++.|.. |+..+|+.++.+
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a 446 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSV 446 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHH
Confidence 334445555544 568899999999966555678888899999999999999999999999875 899999999999
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHH
Q 008727 129 LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208 (556)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 208 (556)
|++.|+++.|.++|+.|.+.|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008727 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI--RECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286 (556)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 286 (556)
.++|+.|... +..|+ ..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++
T Consensus 527 l~lf~~M~~~-Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 527 FGAYGIMRSK-NVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHc-CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999987 66555 89999999999999999999999999976 67999999999999999999999999999999
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCH
Q 008727 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTL 365 (556)
Q Consensus 287 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~ 365 (556)
|.+.|+.|+..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.++. .|+.++|.++|++|.+.|+.|+.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999977 57999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 445 (556)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----c-------------------CCHHHHHHHHHHHHHCCCC
Q 008727 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE----V-------------------GEIEGALRLFHNMLEKGVA 502 (556)
Q Consensus 446 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~m~~~g~~ 502 (556)
++.|++++|.+++++|.+.|+.||..+|++++..|.+ + +..++|..+|++|++.|+.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999876432 1 2346799999999999999
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhh
Q 008727 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552 (556)
Q Consensus 503 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 552 (556)
||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++|+++++
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 99999999998888999999999999999989999999999999999875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-68 Score=547.31 Aligned_cols=468 Identities=18% Similarity=0.207 Sum_probs=445.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHH
Q 008727 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKI-TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159 (556)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (556)
.++...|..++..+.+.|++++|.++|++|.+.|+ +++..+++.++..|.+.|..++|.++|+.|.. |+..+||.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 45777889999999999999999999999999995 56788888999999999999999999999964 79999999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhcc
Q 008727 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239 (556)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 239 (556)
++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. |..| +..+|+.||.+|++.
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~P-dvvTynaLI~gy~k~ 520 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEA-NVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999987 6555 589999999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 008727 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK--LGVAPRTNDYREFILGLIVERRICEAKE 317 (556)
Q Consensus 240 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 317 (556)
|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 5899999999999999999999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 008727 318 LGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396 (556)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 396 (556)
+|+.|.+.++.|+..+||.++.+|. .|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999987 589999999999999999999999999999999999999999999999999999
Q ss_pred CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 008727 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476 (556)
Q Consensus 397 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 476 (556)
.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----c-------------------CCHHHHHHHHHHhhh
Q 008727 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ----E-------------------TNLQAAFEVFNKSVN 533 (556)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~m~~ 533 (556)
+.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+ + +..++|..+|++|.+
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876432 1 234789999999999
Q ss_pred CCCcccHHHHHHHHHHHhhhh
Q 008727 534 HDVMLARSILSTFMISLCRRV 554 (556)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~~~~ 554 (556)
.|+.|+..+|..+|.++|+.+
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~ 861 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPH 861 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccc
Confidence 999999999999998877654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-66 Score=542.68 Aligned_cols=480 Identities=16% Similarity=0.129 Sum_probs=309.2
Q ss_pred HHhhhhhc-cChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcC
Q 008727 54 RVINPYLL-THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132 (556)
Q Consensus 54 ~~l~~~~~-~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 132 (556)
.++..+.+ +.++.|+++|+.+. ..|+.||..+|+.++++|+..+++..+.+++..|.+.|+.|+..+++.|+.+|++.
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~ 235 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC 235 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC
Confidence 33443333 33556666666663 33666666666666666666666666666666666666666666677777777777
Q ss_pred CChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHH
Q 008727 133 KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212 (556)
Q Consensus 133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 212 (556)
|++++|.++|+.|. .+|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.+.+++
T Consensus 236 g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~ 311 (857)
T PLN03077 236 GDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311 (857)
T ss_pred CCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Confidence 77777777777775 34777777777777777888888888888877777778777777777777777777777777
Q ss_pred HHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008727 213 DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292 (556)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 292 (556)
..+.+. |..| +..+|+.|+.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|+++|++|.+.|+
T Consensus 312 ~~~~~~-g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 312 GYVVKT-GFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHh-CCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 777766 5444 36777777777777777777777777775 35777777777777777777777777777777777
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 008727 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371 (556)
Q Consensus 293 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 371 (556)
.||..||+.++.+|++.|+++.+.++++.+.+.|+.++..++|.++..|. .|++++|.++|++|.+ +|..+|+.+
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~m 461 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSI 461 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHH
Confidence 77777777777777777777777777777777777777777777777655 3566666666666643 344555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCCh
Q 008727 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451 (556)
Q Consensus 372 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 451 (556)
+.+|++.|+.++|.++|++|.. ++.||..+|+.++.+|++.|..+.+.+++..+.+.|+.+|..++++++.+|++.|++
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 5555555555555555555543 355555555555555555555555555555555555544444444444444444444
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHh
Q 008727 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 531 (556)
++|.++|+.+ .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|
T Consensus 541 ~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 541 NYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred HHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 4444444443 34555555555555555555555555555555555555555555555555555555555555555
Q ss_pred h-hCCCcccHHHHHHHHHHHhhhh
Q 008727 532 V-NHDVMLARSILSTFMISLCRRV 554 (556)
Q Consensus 532 ~-~~~~~~~~~~~~~l~~~~~~~~ 554 (556)
. +.++.|+..+|..+++.|+|.|
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCC
Confidence 5 4455555555555555555554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-66 Score=542.95 Aligned_cols=489 Identities=13% Similarity=0.150 Sum_probs=352.6
Q ss_pred CHHHHHHHhhhhhc-cChhHHHHHHHHhhhCCCCCCCHHHHHHH-----------------------------------H
Q 008727 48 SPSLVARVINPYLL-THHSLALGFFNWASQQPNFTHSPLSYHSI-----------------------------------L 91 (556)
Q Consensus 48 ~~~~~~~~l~~~~~-~~~~~a~~~f~~~~~~~~~~~~~~~~~~l-----------------------------------l 91 (556)
++...+.++..+.. +.+..|+.+|+.+. +.|+.|+..+|..+ +
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li 128 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQ-ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 44444555555554 35667777777663 34555555555444 4
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHh
Q 008727 92 KSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYID 171 (556)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 171 (556)
..|++.|+++.|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.++++
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 444555555555555555532 3455555666666666666666666666655555666666666666665555555
Q ss_pred HHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHH
Q 008727 172 NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251 (556)
Q Consensus 172 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 251 (556)
.+.+++..|.+.|+.||..+++.++.+|++.|+++.|.++|++|.. ++..+||.+|.+|++.|++++|+++|++
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~------~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR------RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC------CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 5666666666666666666667777777888888888888887753 3467788888888888888888888888
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCH
Q 008727 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331 (556)
Q Consensus 252 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 331 (556)
|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.. ++.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCe
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888753 567
Q ss_pred HHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHH
Q 008727 332 DVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410 (556)
Q Consensus 332 ~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 410 (556)
.+||.++.+|. .|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+++|.+|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 78888888766 46788888888888888888888888888888888888888888888888877777777777777777
Q ss_pred HhcCCHHHHHHHHHHHHHC------------------------------CCCCCHhHHHHHHHHHhhcCChhhHHHHHHH
Q 008727 411 CTSGRLREAYGVIQEMKRK------------------------------GLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460 (556)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~------------------------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 460 (556)
++.|++++|.++|++|.+. ++.||..||+.++.+|++.|+++.+.+++..
T Consensus 435 ~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 7777777777777666431 2344444444444444444444444444444
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccH
Q 008727 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540 (556)
Q Consensus 461 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 540 (556)
+.+.|+.+|..++|+||++|+++|++++|.++|+++ .||..+|+++|.+|++.|+.++|.++|++|.+.|+.|+.
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 455555555555556666666667777777766665 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcC
Q 008727 541 SILSTFMISLCRRVLI 556 (556)
Q Consensus 541 ~~~~~l~~~~~~~~~~ 556 (556)
.+|..+|.+|++.|++
T Consensus 590 ~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 590 VTFISLLCACSRSGMV 605 (857)
T ss_pred ccHHHHHHHHhhcChH
Confidence 9999999999998863
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=522.06 Aligned_cols=468 Identities=16% Similarity=0.183 Sum_probs=440.9
Q ss_pred HHHHHhhhhhc-cChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHH
Q 008727 51 LVARVINPYLL-THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL 129 (556)
Q Consensus 51 ~~~~~l~~~~~-~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 129 (556)
....++..+.. +++..|+++|+|+....++.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.++..|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34555555554 56889999999998777789999999999999999999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHH
Q 008727 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209 (556)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 209 (556)
++.|+++.|.++|++|. .||..+||+++.+|++.|++++|.++|++|.+.|+.|+..||+.++.+|+..|+.+.+.
T Consensus 169 ~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999996 46999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
+++..+.+. |..+ +..+++.|+.+|++.|++++|.++|++|.. +|..+||++|.+|++.|++++|.++|++|.+
T Consensus 245 ~l~~~~~~~-g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 245 QLHCCVLKT-GVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHh-CCCc-cceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999887 6554 588999999999999999999999999974 5999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHH
Q 008727 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTL 368 (556)
Q Consensus 290 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~ 368 (556)
.|+.||..||+.++.+|++.|++++|.+++..+.+.|+.++..++|.++.+|. .|++++|.++|++|.+ ||..+|
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~ 394 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISW 394 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeH
Confidence 99999999999999999999999999999999999999999999999999987 5899999999999964 788999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHhh
Q 008727 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR-KGLDPDVSFYNSLMEACCR 447 (556)
Q Consensus 369 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~ 447 (556)
+.+|.+|++.|+.++|.++|++|.+.|+.||..+|++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999986 6999999999999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHH
Q 008727 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFE 526 (556)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~ 526 (556)
.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++. ++.|+ ..+|..++..|++.|++++|.+
T Consensus 475 ~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 475 EGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred cCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 99999999999876 478999999999999999999999999999997 44564 6799999999999999999999
Q ss_pred HHHHhhhCCCc
Q 008727 527 VFNKSVNHDVM 537 (556)
Q Consensus 527 ~~~~m~~~~~~ 537 (556)
+++.|.+.|+.
T Consensus 550 v~~~m~~~g~~ 560 (697)
T PLN03081 550 VVETLKRKGLS 560 (697)
T ss_pred HHHHHHHcCCc
Confidence 99999998864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=498.30 Aligned_cols=458 Identities=14% Similarity=0.151 Sum_probs=433.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHH
Q 008727 80 FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK-ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN 158 (556)
Q Consensus 80 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (556)
...+..+|+.+|..+.+.|++++|.++|+.|...+ ..|+..+|+.++.+|.+.++.+.|.+++..|.+.|+.||..+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566789999999999999999999999999865 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhc
Q 008727 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238 (556)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (556)
.|+.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+. |..| +..+|+.++.++++
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p-~~~t~~~ll~a~~~ 236 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDA-EPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCC-ChhhHHHHHHHHhc
Confidence 999999999999999999999964 78999999999999999999999999999987 6555 47899999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008727 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318 (556)
Q Consensus 239 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 318 (556)
.|..+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|.++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999964 5889999999999999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 008727 319 GEVIVSGKFTIDDDVLNALIGSVSS-IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397 (556)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 397 (556)
|++|.+.|+.||..+|+.++.++.+ |++++|.+++..|.+.|..||..+++.++.+|++.|++++|.++|++|.+
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---- 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---- 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----
Confidence 9999999999999999999999874 79999999999999999999999999999999999999999999999975
Q ss_pred ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHH-cCCCCCHHHHHHH
Q 008727 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA-SGCSGNLKTYNIL 476 (556)
Q Consensus 398 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l 476 (556)
||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 689999999999999999999999999999999999999999999999999999999999999986 5999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhc
Q 008727 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRVL 555 (556)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 555 (556)
+++|++.|++++|.+++++| ++.|+..+|++++.+|...|+++.|..+++++.+.++. +...|..++..|++.|-
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCC
Confidence 99999999999999999876 68999999999999999999999999999999766543 45688999999999874
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-28 Score=262.41 Aligned_cols=450 Identities=13% Similarity=0.053 Sum_probs=328.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc
Q 008727 88 HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD 167 (556)
Q Consensus 88 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 167 (556)
..++..+.+.|++++|.++++.+.... +.+..++..+...+...|++++|.+.|+++.+..+. +...+..+...+...
T Consensus 435 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQE 512 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHC
Confidence 344455555566666666666555532 445666677777777777777777777776654332 455666677777777
Q ss_pred CCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHH
Q 008727 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247 (556)
Q Consensus 168 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 247 (556)
|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|...++++... .|.+...+..++..+.+.|++++|.+
T Consensus 513 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL---NPQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhHHHHHHHHHHHCCCHHHHHH
Confidence 77777777777776654 234556666777777777777777777777655 44455566667777777888888888
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 008727 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327 (556)
Q Consensus 248 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 327 (556)
+++.+.+.. ..+...|..+..++...|++++|...++.+.+... .+...+..+...+...|++++|...++.+.+..+
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 666 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKP 666 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 887776542 34566777788888888888888888887776532 2344566677777788888888888887776543
Q ss_pred CCCHHHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHH
Q 008727 328 TIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406 (556)
Q Consensus 328 ~~~~~~~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 406 (556)
. +...+..+...+ ..|++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.|+.+...++ +..++..+
T Consensus 667 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l 742 (899)
T TIGR02917 667 D-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKL 742 (899)
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHH
Confidence 3 344455554443 4578888888888887765 34566677777888888888888888888877653 44667778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 008727 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486 (556)
Q Consensus 407 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 486 (556)
..++.+.|+.++|.+.++++.+... .+...+..+...|...|++++|.+.|+++.+.. +.+..+++.+...+...|+
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-
Confidence 8888888888888888888887654 367788888888888999999999999988775 5678888888999999998
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhh
Q 008727 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRV 554 (556)
Q Consensus 487 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 554 (556)
.+|+..++++.+... -+..++..+...+.+.|++++|.++++++++.++. +..++..+..++++.|
T Consensus 820 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 820 PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATG 885 (899)
T ss_pred HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcC
Confidence 779999999886532 24566777888899999999999999999998876 7888888999998876
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-28 Score=264.03 Aligned_cols=455 Identities=12% Similarity=0.052 Sum_probs=392.0
Q ss_pred ccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHH
Q 008727 61 LTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140 (556)
Q Consensus 61 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 140 (556)
.+++..|+..+..+... .+.++..|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+
T Consensus 444 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred cCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 35677788888776543 34577889999999999999999999999998865 5567788889999999999999999
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccC
Q 008727 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220 (556)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 220 (556)
.|+.+....+. +..++..+...+.+.|+.++|...++++.+.+ +.+...+..+...+...|++++|.++++.+...
T Consensus 521 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-- 596 (899)
T TIGR02917 521 RFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-- 596 (899)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--
Confidence 99999887544 78899999999999999999999999998865 345667788999999999999999999999876
Q ss_pred CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH
Q 008727 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300 (556)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (556)
.|.+...|..+...+.+.|++++|.+.|+.+.+.. +.+...+..+...+...|++++|...++++.+... .+...+.
T Consensus 597 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 673 (899)
T TIGR02917 597 -APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQI 673 (899)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 56667889999999999999999999999998763 23667788899999999999999999999987532 2456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008727 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379 (556)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 379 (556)
.+...+...|++++|.++++.+.+..+. +...+..+... +..|++++|.+.|+.+...+ |+..++..+..++.+.|
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCC
Confidence 8899999999999999999999887644 44455544444 45799999999999998875 44477788899999999
Q ss_pred ChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHH
Q 008727 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459 (556)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 459 (556)
++++|.+.++.+.+..+. +...+..+...|...|+.++|.+.|+++.+... ++..+++.+...+...|+ .+|+..++
T Consensus 751 ~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 999999999999887654 788999999999999999999999999998764 478899999999999999 88999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 460 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
++.+.. +-+..++..+...+...|++++|.+.++++.+.+.. +..++..+..++.+.|+.++|.+++++|++
T Consensus 828 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 828 KALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 998863 456677888999999999999999999999988654 889999999999999999999999999863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-20 Score=201.44 Aligned_cols=457 Identities=13% Similarity=0.048 Sum_probs=320.1
Q ss_pred cChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCC----------------C---------
Q 008727 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKI----------------T--------- 116 (556)
Q Consensus 62 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------~--------- 116 (556)
++++.|+..++.+.+..+ .++..+..+...+...|+.++|.+.++++.+... .
T Consensus 161 g~~~~A~~~L~~ll~~~P--~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l 238 (1157)
T PRK11447 161 AQRPEAINQLQRLNADYP--GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAAL 238 (1157)
T ss_pred ccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHH
Confidence 567889998888866542 3566777888888889999999999888754320 0
Q ss_pred -------CCHHhH---------------------HHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC
Q 008727 117 -------LDSSVY---------------------RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDG 168 (556)
Q Consensus 117 -------~~~~~~---------------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 168 (556)
|+.... ......+...|++++|+..|++..+..+. +..++..|..++.+.|
T Consensus 239 ~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g 317 (1157)
T PRK11447 239 QKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQG 317 (1157)
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 000000 01134466789999999999999886543 7889999999999999
Q ss_pred CHhHHHHHHHHHHhCCCccCh-hhH------------HHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHH
Q 008727 169 YIDNALKMFDEMSHRGVEFST-IGF------------GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235 (556)
Q Consensus 169 ~~~~a~~~~~~m~~~~~~~~~-~~~------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 235 (556)
++++|+..|++..+....... ..+ ......+.+.|++++|+..|+++... .|.+...+..+...
T Consensus 318 ~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~---~P~~~~a~~~Lg~~ 394 (1157)
T PRK11447 318 DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV---DNTDSYAVLGLGDV 394 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 999999999998876432211 111 12234567889999999999999977 56667778888999
Q ss_pred HhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH------------------------------------------HHHHh
Q 008727 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA------------------------------------------EEFKL 273 (556)
Q Consensus 236 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll------------------------------------------~~~~~ 273 (556)
+...|++++|++.|++..+.... +...+..+. ..+..
T Consensus 395 ~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~ 473 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN 473 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999999998875321 233333222 23345
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHH
Q 008727 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFF 353 (556)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~ 353 (556)
.|++++|++.|++..+.... +...+..+...+.+.|++++|...++.+.+..+......+...+.....++.++|+..+
T Consensus 474 ~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l 552 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHL 552 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 57777777777776664322 23345556667777777777777777776654433333333333334456777777777
Q ss_pred HHHHHcCCCCCHH---------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 008727 354 NFMIEKGRVPTLS---------TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424 (556)
Q Consensus 354 ~~~~~~~~~~~~~---------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 424 (556)
+.+......++.. .+......+...|+.++|.++++. .+.+...+..+...+.+.|+.++|+..|+
T Consensus 553 ~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~ 627 (1157)
T PRK11447 553 NTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQ 627 (1157)
T ss_pred HhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6654332222211 122345567778888888888772 22355677788888999999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--C
Q 008727 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV--A 502 (556)
Q Consensus 425 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~ 502 (556)
+..+.... +...+..+...+...|++++|++.++.+.+.. +.+...+..+..++...|++++|.++++++..... .
T Consensus 628 ~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 628 RVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 99987543 67788899999999999999999999887652 34566677788889999999999999999886522 1
Q ss_pred C---CHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 503 P---DATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 503 p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
| +...+..+...+...|++++|++.|++.+.
T Consensus 706 ~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 706 PSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 224556667788899999999999998764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-20 Score=198.68 Aligned_cols=492 Identities=11% Similarity=0.068 Sum_probs=332.5
Q ss_pred hHHHHHHhcCCCCCCCHHHHHHHhhhhhc-cChhHHHHHHHHhhhCCCCCCCHH--------------HHHHHHHHHHhc
Q 008727 33 LLEQTLHQLGLRDSLSPSLVARVINPYLL-THHSLALGFFNWASQQPNFTHSPL--------------SYHSILKSLSLS 97 (556)
Q Consensus 33 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~a~~~f~~~~~~~~~~~~~~--------------~~~~ll~~~~~~ 97 (556)
...+.|.++-...+-.|..+......... ++...|.+.++.+.+..+-.+... ....+.+.+.+.
T Consensus 46 ~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~ 125 (1157)
T PRK11447 46 LVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATT 125 (1157)
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhC
Confidence 44566666543333456666655555444 568889998888765542221111 112334567889
Q ss_pred CChhHHHHHHHHhHhCCCCCCHHh-HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHH
Q 008727 98 RQINAIDSVLKQVKVNKITLDSSV-YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKM 176 (556)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 176 (556)
|++++|.+.|+.+.+.+ +++... ...........|+.++|++.++++.+..+. +...+..+...+...|+.++|++.
T Consensus 126 g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~ 203 (1157)
T PRK11447 126 GRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAV 203 (1157)
T ss_pred CCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHH
Confidence 99999999999998765 444322 112222233569999999999999887544 778899999999999999999999
Q ss_pred HHHHHhCCC------------------c--------------cChhhH---------------------HHHHHHHHhhC
Q 008727 177 FDEMSHRGV------------------E--------------FSTIGF---------------------GVFIWKFCENA 203 (556)
Q Consensus 177 ~~~m~~~~~------------------~--------------~~~~~~---------------------~~li~~~~~~g 203 (556)
|+++.+... . |+...+ ......+...|
T Consensus 204 l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g 283 (1157)
T PRK11447 204 LEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSG 283 (1157)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCC
Confidence 998755321 0 110000 01123456679
Q ss_pred cHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-CHHHHH------------HHHHH
Q 008727 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP-DFIAYR------------IVAEE 270 (556)
Q Consensus 204 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~------------~ll~~ 270 (556)
++++|+..|++.... .|.+..++..+...+.+.|++++|+..|++..+..... +...+. .....
T Consensus 284 ~~~~A~~~l~~aL~~---~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 284 QGGKAIPELQQAVRA---NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 999999999999876 67778888889999999999999999999988763221 111121 12345
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH----------
Q 008727 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS---------- 340 (556)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---------- 340 (556)
+.+.|++++|+..|+++.+... .+...+..+...+...|++++|.+.|+++++..+... ..+..+...
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~-~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT-NAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCHHHHH
Confidence 6788999999999999988643 2344566777889999999999999999987654432 222222111
Q ss_pred ---------------------------------HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008727 341 ---------------------------------VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387 (556)
Q Consensus 341 ---------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 387 (556)
...|++++|++.|++..+.... +...+..+...|.+.|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1246777777777777665422 355566677778888888888888
Q ss_pred HHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------------------------------
Q 008727 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK-------------------------------------- 429 (556)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------------------------------------- 429 (556)
++.+.+..+. +...+..+...+...++.++|+..++.+...
T Consensus 518 l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 8877664432 3333322222333334444443333321100
Q ss_pred -CCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHhh
Q 008727 430 -GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP-DATT 507 (556)
Q Consensus 430 -~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~ 507 (556)
....+...+..+...+.+.|++++|++.|++..+.. +.+...+..++..|...|++++|.+.++...+. .| +...
T Consensus 597 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~ 673 (1157)
T PRK11447 597 RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNT 673 (1157)
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHH
Confidence 012344556677788888999999999999998864 456788889999999999999999999988754 33 3455
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 508 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
+..+..++...|++++|.++++++++...
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 66677888899999999999999887653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-20 Score=173.69 Aligned_cols=426 Identities=13% Similarity=0.043 Sum_probs=295.5
Q ss_pred hhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChH
Q 008727 57 NPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136 (556)
Q Consensus 57 ~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 136 (556)
+.+..++...|.+-...+.++... +....-.+-..+....+.+.....-....+.. +.-.++|..+...+-..|+++
T Consensus 57 ~~yq~gd~~~a~~h~nmv~~~d~t--~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~ 133 (966)
T KOG4626|consen 57 RLYQGGDYKQAEKHCNMVGQEDPT--NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQ 133 (966)
T ss_pred HHHhccCHHHHHHHHhHhhccCCC--cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHH
Confidence 334445677777766666544322 11222223344555666666555444444433 456788888999999999999
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHH-HHHHHHHhhCcHHHHHHHHHHH
Q 008727 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG-VFIWKFCENAKLGQVLSMLDEV 215 (556)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~ 215 (556)
+|+..++.+.+..++ .+..|..+..++...|+.+.|.+.|.+..+.+ |+..... .+-..+-..|++++|...+.+.
T Consensus 134 ~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 134 DALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 999999999887544 67889999999999999999999998887753 4444332 2333445578888888888887
Q ss_pred HhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008727 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF-IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294 (556)
Q Consensus 216 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 294 (556)
.+. .|.-..+|..|...+-.+|+...|+.-|++..+. .|+- ..|-.|-..|...+.+++|+..+.+.... .|
T Consensus 211 i~~---qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 211 IET---QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred Hhh---CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 765 5666788888888888999999999999888765 4443 56778888888888888888888776653 34
Q ss_pred Ch-hhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008727 295 RT-NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372 (556)
Q Consensus 295 ~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 372 (556)
+. ..+..+...|...|.++.|...+++.++..+.. +..|+.+-.++. .|+..+|.+.+.+.+..... .....+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F-~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF-PDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc-hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHH
Confidence 33 345556667778888888888888887765443 344554544444 57777777777777665322 345566677
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhhcCCh
Q 008727 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD-VSFYNSLMEACCREDLL 451 (556)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~ 451 (556)
..|...|.++.|..+|....+..+. -...+|.+...|-+.|++++|+..+++..+- +|+ ...|+.+...|-..|+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhH
Confidence 7777777888888777777664322 2336777777777778888888777777764 454 45677777777777778
Q ss_pred hhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 008727 452 RPAKKLWDQMFASGCSGN-LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504 (556)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 504 (556)
+.|.+.+.+.+.. .|. ...++.|.+.|-..|++.+|+.-+++.+. ++||
T Consensus 439 ~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 439 SAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred HHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 8887777777763 344 45677777777777888888877777773 4555
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-21 Score=186.47 Aligned_cols=306 Identities=12% Similarity=0.062 Sum_probs=157.7
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCC--chhhHHHHHHHHhccC
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN--GSVIAVLIIHGFCKGK 240 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~ 240 (556)
.+...|++++|...|.++.+.+. .+..++..+...+...|++++|...++.+... +..++ ....+..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCC
Confidence 34455556666666666655431 23334555555555555555555555555443 11111 1123444555555555
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008727 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320 (556)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 320 (556)
++++|.++|+++.+.. .++..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 5555555555554431 12344455555555555555555555555444321111000
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccH
Q 008727 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400 (556)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 400 (556)
....+..+...+.+.|++++|...++++.+.... +.
T Consensus 179 -------------------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~ 214 (389)
T PRK11788 179 -------------------------------------------IAHFYCELAQQALARGDLDAARALLKKALAADPQ-CV 214 (389)
T ss_pred -------------------------------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CH
Confidence 0011223334455556666666666655544322 34
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008727 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480 (556)
Q Consensus 401 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 480 (556)
..+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|.+.++++.+. .|+...+..++..+
T Consensus 215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~ 292 (389)
T PRK11788 215 RASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLL 292 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 4555555666666666666666666665432222344556666666666666666666666654 34545555666666
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc---cCCHHHHHHHHHHhhhCCCcccHH
Q 008727 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ---ETNLQAAFEVFNKSVNHDVMLARS 541 (556)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 541 (556)
.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 293 ~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 293 EEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 6666666666666666543 4566666655555443 345666666666666655554444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-20 Score=183.63 Aligned_cols=298 Identities=12% Similarity=0.109 Sum_probs=148.5
Q ss_pred cCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccC---hhhHHHHHHHHHhhCcHHH
Q 008727 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS---TIGFGVFIWKFCENAKLGQ 207 (556)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~ 207 (556)
..|++++|...|+++.+.++. +..++..+...+...|++++|..+++.+...+..++ ..++..+...|...|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 334444444444444433211 333444444444444444444444444443221110 1233444444555555555
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 008727 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF----IAYRIVAEEFKLMGSVFEREVV 283 (556)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~ 283 (556)
|...|+.+.+. .+.+..++..++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|...
T Consensus 126 A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 126 AEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 55555555433 2333445555566666666666666666666554322211 1233344444555555555555
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 008727 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP 363 (556)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 363 (556)
++++.+.. |+
T Consensus 203 ~~~al~~~--p~-------------------------------------------------------------------- 212 (389)
T PRK11788 203 LKKALAAD--PQ-------------------------------------------------------------------- 212 (389)
T ss_pred HHHHHhHC--cC--------------------------------------------------------------------
Confidence 55544321 11
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 008727 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443 (556)
Q Consensus 364 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 443 (556)
+...+..+...+.+.|++++|.++++++.+.++.....+++.++.+|...|+.++|...++++.+. .|+...+..+..
T Consensus 213 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~ 290 (389)
T PRK11788 213 CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQ 290 (389)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 111223333444555555555555555554332222334556666666666666666666666654 344445566666
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCHh
Q 008727 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE---VGEIEGALRLFHNMLEKGVAPDAT 506 (556)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 506 (556)
.+.+.|++++|.++++++.+. .|+..+++.++..+.. .|+.+++..++++|.++++.|++.
T Consensus 291 ~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 291 LLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 666666666666666666653 4666666666655553 346666666666666655555544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-17 Score=166.53 Aligned_cols=431 Identities=10% Similarity=-0.037 Sum_probs=256.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh
Q 008727 87 YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166 (556)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 166 (556)
+......+.+.|+++.|+..|++.++.. |+...|..+..+|.+.|++++|++.++...+..+. +..+|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 4455667788899999999999988754 67788888899999999999999999999887543 67788889999999
Q ss_pred cCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHH
Q 008727 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246 (556)
Q Consensus 167 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 246 (556)
.|++++|+.-|......+.. +......++..+... .+.......... .+.....+..+.. |......+...
T Consensus 207 lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~~----~a~~~~~~~l~~---~~~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGF-RNEQSAQAVERLLKK----FAESKAKEILET---KPENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHH----HHHHHHHHHHhc---CCCCCCCHHHHHH-HHHHccCCcch
Confidence 99999999888766554321 111112222211111 122222222222 1111111111111 11111111111
Q ss_pred HHHHHHhhCCCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHhcC-CCCC-hhhHHHHHHHHHhcCCHHHHHHHHH
Q 008727 247 KVLDELRIRECKPDF-IAYRIVAEE---FKLMGSVFEREVVLKKKRKLG-VAPR-TNDYREFILGLIVERRICEAKELGE 320 (556)
Q Consensus 247 ~~~~~m~~~~~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~-~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~ 320 (556)
.-+..-.+. .|+. ..+..+... ....+++++|.+.|+...+.+ ..|+ ...+..+...+...|++++|...++
T Consensus 278 ~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111111110 1110 001111000 122356777777777776654 2232 2345555556667777777777777
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccH
Q 008727 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400 (556)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 400 (556)
..++..+......++........|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+..+. +.
T Consensus 356 kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~ 433 (615)
T TIGR00990 356 KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FI 433 (615)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CH
Confidence 7776543322222222233344677777777777776653 234566777777777888888888888887776543 55
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH------HHHH
Q 008727 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL------KTYN 474 (556)
Q Consensus 401 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~ 474 (556)
..+..+...+.+.|++++|+..+++..+.... +...|+.+...+...|++++|.+.|++..+..-..+. ..++
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 66777777777888888888888877765322 4667777777888888888888888887764211111 1112
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCC
Q 008727 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 535 (556)
.....+...|++++|.+++++..+... .+...+..+...+.+.|++++|+++|++..+..
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 222233446788888888888775532 234457777778888888888888888776544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-17 Score=172.21 Aligned_cols=166 Identities=12% Similarity=0.101 Sum_probs=117.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
.++....-.+.+....|+.++|++++....... +.+...+..+...+.+.|++++|.++|++.....+. +...+..+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 344455566677777788888888887776633 455666777777888888888888888887665322 566677777
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 241 (556)
..+...|++++|...+++..+... .+.. +..+...+...|+.++|+..++++... .|.+...+..+...+...+.
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~---~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPR---APQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCC
Confidence 777788888888888888776532 2333 666677777778888888888888766 56666666667777777788
Q ss_pred HHHHHHHHHHHhh
Q 008727 242 VEEAFKVLDELRI 254 (556)
Q Consensus 242 ~~~A~~~~~~m~~ 254 (556)
.+.|++.++....
T Consensus 166 ~e~Al~~l~~~~~ 178 (765)
T PRK10049 166 SAPALGAIDDANL 178 (765)
T ss_pred hHHHHHHHHhCCC
Confidence 8888877776553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-16 Score=164.26 Aligned_cols=214 Identities=9% Similarity=-0.030 Sum_probs=130.2
Q ss_pred HHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcC
Q 008727 53 ARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132 (556)
Q Consensus 53 ~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 132 (556)
........++++..|+..|+.+....+ -+...+..+...+...|++++|+..+++..+.. +-|...+..+ ..+
T Consensus 49 ~~a~~~~~~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i--- 121 (987)
T PRK09782 49 DKALKAQKNNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI--- 121 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---
Confidence 344444455788899999999865542 357788889999999999999999999998875 3344444443 222
Q ss_pred CChHHHHHHHHHHHhCCCCCChHhHHHHHHH--------HHhcCCHhHHHHHHHHHHhCCCccChhhHHHH-HHHHHhhC
Q 008727 133 KNTQKAFSVFNEVKFNCEDIGPEICNSLLAV--------LASDGYIDNALKMFDEMSHRGVEFSTIGFGVF-IWKFCENA 203 (556)
Q Consensus 133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g 203 (556)
+++++|..+++++....+. +..++..+... |.+. ++|.+.++ .......|+..+.... .+.|...|
T Consensus 122 ~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~ 196 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLK 196 (987)
T ss_pred ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHh
Confidence 8888999999999877544 55566555555 5555 44444444 2222233344444444 67777788
Q ss_pred cHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhc-cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008727 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK-GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282 (556)
Q Consensus 204 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 282 (556)
++++|++++..+.+. .+.+......|...|.. .++ +++..+++.. ++-|...+..+...+.+.|+.++|.+
T Consensus 197 dw~~Ai~lL~~L~k~---~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~ 268 (987)
T PRK09782 197 QWSQADTLYNEARQQ---NTLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQH 268 (987)
T ss_pred CHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888777766 23333333444444444 233 4444443321 12344555555555555555555555
Q ss_pred HHHH
Q 008727 283 VLKK 286 (556)
Q Consensus 283 ~~~~ 286 (556)
++++
T Consensus 269 ~L~~ 272 (987)
T PRK09782 269 YLIE 272 (987)
T ss_pred HHHh
Confidence 5444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-18 Score=172.45 Aligned_cols=334 Identities=10% Similarity=0.054 Sum_probs=235.7
Q ss_pred hHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 008727 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233 (556)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 233 (556)
..-...++..+.+.|++++|..+++........+.. .+..+..+....|++++|.+.++.+... .|.+...+..+.
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~---~P~~~~a~~~la 117 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAV---NVCQPEDVLLVA 117 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHh---CCCChHHHHHHH
Confidence 344556677788889999999999998887654433 4444555677799999999999999876 677778888888
Q ss_pred HHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 008727 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313 (556)
Q Consensus 234 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 313 (556)
..+...|++++|.+.|++..... +.+...+..+...+...|++++|...++.+......+.. .+.. +..+...|+++
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~-~~~l~~~g~~~ 194 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIAT-CLSFLNKSRLP 194 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHH-HHHHHHcCCHH
Confidence 99999999999999999988752 224567778888899999999999999887665433322 2222 23477788888
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH----HHHHH
Q 008727 314 EAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE----LVEVY 388 (556)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~ 388 (556)
+|...++.+.+.....+......+... ...|++++|+..+++..+.. +.+...+..+...+...|++++ |...+
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 888888887766543333333332222 34577778888887777654 2345566667777777777774 67777
Q ss_pred HHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC
Q 008727 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468 (556)
Q Consensus 389 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 468 (556)
+...+..+. +...+..+...+...|++++|...+++..+.... +...+..+..++.+.|++++|.+.++++.+. .|
T Consensus 274 ~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P 349 (656)
T PRK15174 274 RHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KG 349 (656)
T ss_pred HHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cc
Confidence 777766543 5667777777777778888888877777765433 3455666777777778888888877777764 34
Q ss_pred CH-HHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 469 NL-KTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 469 ~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+. ..+..+..++...|+.++|.+.|++..+.
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 43 23333456677778888888887777755
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-17 Score=172.16 Aligned_cols=408 Identities=9% Similarity=0.002 Sum_probs=309.9
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHH
Q 008727 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195 (556)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 195 (556)
+.+.....-.+......|+.++|++++....... +.+...+..+...+...|++++|.++|++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 5566677777888899999999999999997632 4466789999999999999999999999988864 2345566778
Q ss_pred HHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008727 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275 (556)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 275 (556)
...+...|++++|+..++++... .|.+.. +..+...+...|+.++|+..+++..+.... +...+..+...+...+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~---~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSG---APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 88899999999999999999977 666666 888899999999999999999999987332 4555666777888889
Q ss_pred CHHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHcC-CCCCC--HHHH----
Q 008727 276 SVFEREVVLKKKRKLGVAPRT------NDYREFILGLI-----VERRI---CEAKELGEVIVSG-KFTID--DDVL---- 334 (556)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~--~~~~---- 334 (556)
..++|++.++.... .|+. ......+.... ..+++ ++|.+.++.+.+. ...|+ ....
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 99999998876553 2221 01112222222 12234 6788888888754 11222 2111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc---cHhhHHHHHHHH
Q 008727 335 NALIGSVSSIDPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT---DMESYNVMVSFL 410 (556)
Q Consensus 335 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~ 410 (556)
..+...+..+++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+.+.+..... .......+..++
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 1123346678999999999999987643 332 22235678999999999999999987754321 134566677788
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-----------CCC---HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 008727 411 CTSGRLREAYGVIQEMKRKGL-----------DPD---VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476 (556)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 476 (556)
...|++++|.++++.+..... .|+ ...+..+...+...|+.++|+++++++.... +.+...+..+
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~l 399 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDY 399 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 999999999999999987631 123 2345677788899999999999999998764 5668889999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 477 ISKFSEVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
...+...|++++|++.+++..+. .|+ ...+......+.+.|++++|..+++++++..+.
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999965 455 556666677889999999999999999887653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-17 Score=167.78 Aligned_cols=331 Identities=11% Similarity=0.013 Sum_probs=194.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh
Q 008727 87 YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166 (556)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 166 (556)
...++..+.+.|++++|..+++...... +-+...+..++.++...|+++.|...|+++....+. +...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 3445666777888888888888877765 445566666667777788888888888888776543 66778888888888
Q ss_pred cCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHH
Q 008727 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246 (556)
Q Consensus 167 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 246 (556)
.|++++|.+.|++..+.. +.+...+..+...+...|++++|...++.+... .|++...+..+. .+...|++++|.
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~---~P~~~~a~~~~~-~l~~~g~~~eA~ 197 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE---VPPRGDMIATCL-SFLNKSRLPEDH 197 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CCCCHHHHHHHH-HHHHcCCHHHHH
Confidence 888888888888887753 224456667777788888888888888777654 333344443332 366778888888
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHH
Q 008727 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE----AKELGEVI 322 (556)
Q Consensus 247 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~ 322 (556)
..++.+.+....++...+..+...+...|++++|+..+++..+.... +...+..+...+...|++++ |...++.+
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 88887766533334444455566677778888888888777765322 33445556666677777664 55555555
Q ss_pred HcCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHh
Q 008727 323 VSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401 (556)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 401 (556)
.+..+. +...+..+... ...|++++|+..+++..+... .+......+..++.+.|++++|...++.+.+.++. +..
T Consensus 277 l~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~ 353 (656)
T PRK15174 277 LQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSK 353 (656)
T ss_pred HhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chH
Confidence 544322 22222222222 223444444444444444321 12233333444444444444444444444433221 111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 428 (556)
.+..+..++...|+.++|...|++..+
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222223334444444444444444444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-18 Score=158.98 Aligned_cols=381 Identities=12% Similarity=0.034 Sum_probs=314.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChH-hHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE-ICNSLL 161 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li 161 (556)
-.++|..+..++-..|+++.|..+++.+++.. +-....|..+..++...|+.+.|...|.+..+. .|+.. +.+.+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 45788889999999999999999999999976 557889999999999999999999999999876 34444 445556
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 241 (556)
..+...|+..+|...|.+..+... -=...|+.|...+-..|+...|++-|++.... .|.-...|..|...|...+.
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhc
Confidence 666678999999999999888643 23467888888888999999999999999976 67777889889999999999
Q ss_pred HHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHH
Q 008727 242 VEEAFKVLDELRIRECKPD-FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR-TNDYREFILGLIVERRICEAKELG 319 (556)
Q Consensus 242 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~ 319 (556)
+++|...|.+.... .|+ ...+..+...|...|.++.|+..+++.++. .|+ ...|+.+..++-..|++.+|...+
T Consensus 268 ~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 268 FDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred chHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHH
Confidence 99999999987765 454 467888888899999999999999998875 343 347999999999999999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc
Q 008727 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT-LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398 (556)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 398 (556)
...+...+......+|...-.-..|..++|..+|....+- .|. ...++.|...|-..|++++|+..|++.....+.
T Consensus 344 nkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~- 420 (966)
T KOG4626|consen 344 NKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT- 420 (966)
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-
Confidence 9999876665555555554445578999999999988764 343 567888999999999999999999998875432
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HHHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN-LKTYNILI 477 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li 477 (556)
=...|+.+...|-..|+++.|.+.+.+.+..+.. -...++.|...|-..|++.+|++-++...+. +|| +..|-.++
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNll 497 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLL 497 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHH
Confidence 3458999999999999999999999999886432 3568899999999999999999999999984 666 34454455
Q ss_pred HHH
Q 008727 478 SKF 480 (556)
Q Consensus 478 ~~~ 480 (556)
.+.
T Consensus 498 h~l 500 (966)
T KOG4626|consen 498 HCL 500 (966)
T ss_pred HHH
Confidence 443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-16 Score=159.73 Aligned_cols=424 Identities=11% Similarity=-0.018 Sum_probs=285.6
Q ss_pred hhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChH
Q 008727 57 NPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136 (556)
Q Consensus 57 ~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 136 (556)
..+..+++..|+..|..+... .|++..|..+..++.+.|++++|++.++..++.. +.+...+..+..+|...|+++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 334456789999999988654 4678889999999999999999999999999876 557788999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHH
Q 008727 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216 (556)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 216 (556)
+|+.-|..+...+...+.. ...++.-+.. ..+........+.. +++...+..+ ..+......+....-+....
T Consensus 212 eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCcchhhhhccc
Confidence 9999988776543221222 1222221111 12222233322221 1122222222 12222111111111111111
Q ss_pred hccCCCCCchhhHHHHHHH---HhccCCHHHHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008727 217 KRENSMINGSVIAVLIIHG---FCKGKRVEEAFKVLDELRIRE-CKP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291 (556)
Q Consensus 217 ~~~~~~~~~~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 291 (556)
.. .+.....+..+... ....+++++|.+.|+...+.+ ..| +...|..+...+...|++++|+..+++..+.
T Consensus 285 ~~---~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l- 360 (615)
T TIGR00990 285 EL---DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL- 360 (615)
T ss_pred cc---ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 11 11111111111111 123467889999999888764 233 3456777777888899999999999888775
Q ss_pred CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 008727 292 VAPR-TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370 (556)
Q Consensus 292 ~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 370 (556)
.|+ ...|..+...+...|++++|...++.+++..+......++.....+..|++++|+..|++..+... .+...+..
T Consensus 361 -~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~ 438 (615)
T TIGR00990 361 -DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQ 438 (615)
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHH
Confidence 343 346677777888899999999999988877544333333333344557899999999999887652 34666777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh------HHHHHHHH
Q 008727 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS------FYNSLMEA 444 (556)
Q Consensus 371 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~~~~ll~~ 444 (556)
+...+.+.|++++|+..|+...+..+. +...++.+...+...|++++|++.|++..+.....+.. .++..+..
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 888899999999999999998876543 67789999999999999999999999988764321111 12222333
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+...|++++|.+++++..+.. +.+...+..+...+.+.|++++|.+.|++..+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445699999999999988764 344567889999999999999999999999865
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-16 Score=156.55 Aligned_cols=448 Identities=12% Similarity=0.051 Sum_probs=270.4
Q ss_pred HHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHc
Q 008727 52 VARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ 131 (556)
Q Consensus 52 ~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 131 (556)
..+.+-.+..++...|+..|+.+.+.....+ +..+ .++..+...|+.++|+..+++.... .+........+...+..
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~-~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQS-GQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCccch-hhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHH
Confidence 3444444455666677777776654432110 1122 6666666777777777777776621 12233334444556677
Q ss_pred CCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHH
Q 008727 132 GKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211 (556)
Q Consensus 132 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 211 (556)
.|++++|+++|+++.+..+. ++..+..++..+...++.++|++.++.+.... |+...+..++..+...++..+|++.
T Consensus 115 ~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHH
Confidence 77777777777777766544 45666666777777777777777777776653 3444443333333334455457777
Q ss_pred HHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008727 212 LDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291 (556)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 291 (556)
++++... .|.+...+..++..+.+.|-...|.++..+-... +.+. .+.-+ . .+.+.+ ..+.+
T Consensus 192 ~ekll~~---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~--~~~~l-~-------~~~~a~----~vr~a 253 (822)
T PRK14574 192 SSEAVRL---APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAE--HYRQL-E-------RDAAAE----QVRMA 253 (822)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHH--HHHHH-H-------HHHHHH----HHhhc
Confidence 7777665 5555666666666677777766666555442211 1111 10000 0 000000 01111
Q ss_pred CCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHcCCC-CCC-HHH-----HHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 008727 292 VAPRTNDYREFILGLIVER---RICEAKELGEVIVSGKF-TID-DDV-----LNALIGSVSSIDPRSAIVFFNFMIEKGR 361 (556)
Q Consensus 292 ~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~-~~~-~~~-----~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 361 (556)
..++.. ... -.+.|..-++.+...-. .|. ... .-.++.....++..++++.|+.+...+.
T Consensus 254 ~~~~~~----------~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~ 323 (822)
T PRK14574 254 VLPTRS----------ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY 323 (822)
T ss_pred cccccc----------chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Confidence 101000 001 12334444444443211 121 111 2333344456788888888888888887
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----
Q 008727 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY-----FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL----- 431 (556)
Q Consensus 362 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----- 431 (556)
+....+-..+.++|...+++++|..+++.+..... .++......|..+|...+++++|..+++++.+...
T Consensus 324 ~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~ 403 (822)
T PRK14574 324 KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGV 403 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEec
Confidence 66667888888888888888999888888765431 22344457788888888899999998888887321
Q ss_pred ------CCC--H-hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 008727 432 ------DPD--V-SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502 (556)
Q Consensus 432 ------~p~--~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 502 (556)
.|| - ..+..++..+...|+..+|++.++++.... +-|......+.+.+...|.+.+|++.++..... .
T Consensus 404 ~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~ 480 (822)
T PRK14574 404 YGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--A 480 (822)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--C
Confidence 122 1 234556667788889999999999887764 667888888888888899999999988777644 3
Q ss_pred C-CHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 503 P-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 503 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
| +..+......++...|++++|..+.++..+..+
T Consensus 481 P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 481 PRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 4 355566677777888899999888887766554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-15 Score=156.41 Aligned_cols=441 Identities=9% Similarity=-0.040 Sum_probs=301.1
Q ss_pred CCCHHHHHHH-HHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHc-CCChHHHHHHHHHHHhCCCCCChHhHH
Q 008727 81 THSPLSYHSI-LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ-GKNTQKAFSVFNEVKFNCEDIGPEICN 158 (556)
Q Consensus 81 ~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (556)
.|++.+.... .+.+.+.+++++|+.++.++.+.+ +.+......|...|.. .++ +.+..+++.. .+-++..+.
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHH
Confidence 3344444444 788889999999999999999887 4566667777777777 366 7777775532 234788899
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCc-cChhhHHHH------------------------------HHHHHhhCcHHH
Q 008727 159 SLLAVLASDGYIDNALKMFDEMSHRGVE-FSTIGFGVF------------------------------IWKFCENAKLGQ 207 (556)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~l------------------------------i~~~~~~g~~~~ 207 (556)
.+...|.+.|+.++|.+++.++...... |...++.-+ +..+.+.++++.
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA 331 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999887654322 333332222 333444455554
Q ss_pred HHHHHHHHHhcc-------CC-------------------CCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC-C-CCC
Q 008727 208 VLSMLDEVRKRE-------NS-------------------MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-E-CKP 259 (556)
Q Consensus 208 a~~~~~~~~~~~-------~~-------------------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~-~~p 259 (556)
++++...-.... +. .|.+......+.....+.|+.++|.++|+..... + -.+
T Consensus 332 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 411 (987)
T PRK09782 332 AQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARL 411 (987)
T ss_pred HHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccccc
Confidence 444422100000 00 1112222222333455778899999999887662 1 223
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHhc-CCCC---ChhhHHHHHHHHHhcC
Q 008727 260 DFIAYRIVAEEFKLMGS---VFEREVV----------------------LKKKRKL-GVAP---RTNDYREFILGLIVER 310 (556)
Q Consensus 260 ~~~~~~~ll~~~~~~~~---~~~a~~~----------------------~~~~~~~-~~~~---~~~~~~~ll~~~~~~~ 310 (556)
+.....-++..|.+.+. ..++..+ .+..... +..| +...+..+..++.. +
T Consensus 412 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~ 490 (987)
T PRK09782 412 SQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-T 490 (987)
T ss_pred CHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-C
Confidence 44445567777776655 3333222 1122111 2223 34455566666655 7
Q ss_pred CHHHHHHHHHHHHcCCCCCCHHHH-HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008727 311 RICEAKELGEVIVSGKFTIDDDVL-NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389 (556)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 389 (556)
+.++|...+.......+ +.... .........|++++|...|+++... .|+...+..+...+.+.|+.++|...++
T Consensus 491 ~~~eAi~a~~~Al~~~P--d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~ 566 (987)
T PRK09782 491 LPGVALYAWLQAEQRQP--DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQ 566 (987)
T ss_pred CcHHHHHHHHHHHHhCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88889998877776553 32221 1112224679999999999987654 3444455667778899999999999999
Q ss_pred HHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC
Q 008727 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469 (556)
Q Consensus 390 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 469 (556)
...+..+. +...+..+.......|++++|...+++..+. .|+...|..+..++.+.|+.++|...+++..+.. +.+
T Consensus 567 qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~ 642 (987)
T PRK09782 567 QAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNN 642 (987)
T ss_pred HHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 99886533 3333334444445669999999999999986 5678889999999999999999999999999874 556
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
...++.+..++...|++++|++.+++..+... -+...+..+..++...|++++|...+++..+..+.
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 77888889999999999999999999987632 25677888999999999999999999999887754
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.8e-16 Score=150.00 Aligned_cols=471 Identities=11% Similarity=0.035 Sum_probs=349.6
Q ss_pred hhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCC--CCCHHhHHHHHHHHHcCCChHHHHHH
Q 008727 64 HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKI--TLDSSVYRFIIPSLIQGKNTQKAFSV 141 (556)
Q Consensus 64 ~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~ 141 (556)
...+++++..+-...+ .+|...+.|...+.-.|++..++++...+..... ..-...|-.+.++|-..|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 4466776666655444 5777888999999999999999999999887642 22345688899999999999999999
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhC----cHHHHHHHHHHHHh
Q 008727 142 FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA----KLGQVLSMLDEVRK 217 (556)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~ 217 (556)
|.+.......--+..+--|.+.+.+.|+.+.+...|+...+.. +-+..|..+|...|...+ ..+.|..++.....
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 9998776433224456678899999999999999999998863 234566666766777664 56788888888876
Q ss_pred ccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH----hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 008727 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL----RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL--- 290 (556)
Q Consensus 218 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 290 (556)
. .|.+...|..+...+-..+-+.. +.+|... ...+-.+.....|.+.......|++.+|...|......
T Consensus 409 ~---~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 409 Q---TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred c---ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 6 57778888877777765554444 6666543 44555577888999999999999999999999987765
Q ss_pred CCCCChh-h-----HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCC
Q 008727 291 GVAPRTN-D-----YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVP 363 (556)
Q Consensus 291 ~~~~~~~-~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~ 363 (556)
-..++.. + --.+....-..++.+.|.+.|..+.+..+. -...|-.+... -.+++..+|...+......+ ..
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~ 562 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SS 562 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cC
Confidence 2333332 1 112233444567899999999999886433 23334444322 33578889999998887654 23
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCccHhhHHHHHHHHHh------------cCCHHHHHHHHHHHHHCC
Q 008727 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSAN-DYFTDMESYNVMVSFLCT------------SGRLREAYGVIQEMKRKG 430 (556)
Q Consensus 364 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~~~ 430 (556)
++..++.+...+.+...+..|.+-|..+.+. ...+|..+.-+|...|.+ .+..++|+++|.+..+..
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d 642 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND 642 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555666788888888888877766543 222466655555555443 235678999999999876
Q ss_pred CCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHhhHH
Q 008727 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK-GVAPDATTYT 509 (556)
Q Consensus 431 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~ 509 (556)
++ |...-|-+.-.++..|++.+|..+|.+..+.. .-...+|-.+.++|..+|++..|+++|+...+. .-.-+.....
T Consensus 643 pk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 643 PK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred cc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 55 77777888889999999999999999999875 346677889999999999999999999997765 4445778889
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHH
Q 008727 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545 (556)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 545 (556)
.|.+++.+.|.+.+|.+.+.......+.-+...++.
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 999999999999999999999888777655555553
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.2e-15 Score=143.05 Aligned_cols=483 Identities=12% Similarity=0.039 Sum_probs=262.7
Q ss_pred hhhccChhHHHHHHHHhh-hCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC---
Q 008727 58 PYLLTHHSLALGFFNWAS-QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK--- 133 (556)
Q Consensus 58 ~~~~~~~~~a~~~f~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--- 133 (556)
.+.+++...|+.+|..+. ..+...||+.. .+-..+.+.++.+.|...|+...+.+ |-++.++..|...-....
T Consensus 174 ~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~ 250 (1018)
T KOG2002|consen 174 AYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSD 250 (1018)
T ss_pred HhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchH
Confidence 345667888899888853 35566666633 23345566777777777777666654 223333333322222222
Q ss_pred ChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCc--cChhhHHHHHHHHHhhCcHHHHHHH
Q 008727 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE--FSTIGFGVFIWKFCENAKLGQVLSM 211 (556)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~ 211 (556)
.+..++..+...-.... -++.+.+.|...|.-.|+++.++.+...+...... .-...|-.+.++|-..|++++|...
T Consensus 251 s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 23344444444333222 25566666666666666666666666665553211 1122344555666666666666666
Q ss_pred HHHHHhccCCCCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 008727 212 LDEVRKRENSMING-SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP-DFIAYRIVAEEFKLMG----SVFEREVVLK 285 (556)
Q Consensus 212 ~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~----~~~~a~~~~~ 285 (556)
|.+..+. .+++ ...+.-+.+.|.+.|+++.+...|+.+.+. .| +..+...|...|...+ ..+.|..++.
T Consensus 330 Y~~s~k~---~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 330 YMESLKA---DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHcc---CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 6655543 2222 222344566666666666666666666554 22 2334444444444433 2233333333
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----cCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHc-
Q 008727 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV----SGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEK- 359 (556)
Q Consensus 286 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~- 359 (556)
+..+.- ..|...|..+...+... +...+...+..+. ..+..+.+.+.|.+-.. +..|+++.|...|......
T Consensus 405 K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 405 KVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 333221 11222333333332222 2222233332222 22222333333333322 4445555555555444332
Q ss_pred --CCCCCHH------HHHHHHHHHHhc----------------------------------CChHHHHHHHHHHHhCCCC
Q 008727 360 --GRVPTLS------TLSNLSKNLCKR----------------------------------NKSDELVEVYKVLSANDYF 397 (556)
Q Consensus 360 --~~~~~~~------~~~~ll~~~~~~----------------------------------g~~~~a~~~~~~~~~~~~~ 397 (556)
...++.. +--.+...+-.. ++..+|...++.....+-.
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 1111110 011111122222 4455555555555543222
Q ss_pred ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhh------------cCChhhHHHHHHHHHHc
Q 008727 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG-LDPDVSFYNSLMEACCR------------EDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 398 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~ 464 (556)
++..++.+...+.+...+..|.+-|......- ..+|..+...|.+.|.. .+..++|+++|.+..+.
T Consensus 563 -np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~ 641 (1018)
T KOG2002|consen 563 -NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN 641 (1018)
T ss_pred -CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc
Confidence 45555556666666666666666555444321 22566666666665542 23478899999999887
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhC-CCcccHHHH
Q 008727 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH-DVMLARSIL 543 (556)
Q Consensus 465 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~ 543 (556)
. +.|...-|.+.-+++..|++.+|..+|....+... -+..+|-.+..+|...|++..|+++|+...+. ....+..++
T Consensus 642 d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl 719 (1018)
T KOG2002|consen 642 D-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVL 719 (1018)
T ss_pred C-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 5 67888889999999999999999999999998754 25567888999999999999999999987654 456677777
Q ss_pred HHHHHHHhhhh
Q 008727 544 STFMISLCRRV 554 (556)
Q Consensus 544 ~~l~~~~~~~~ 554 (556)
..|-.++.+.|
T Consensus 720 ~~Lara~y~~~ 730 (1018)
T KOG2002|consen 720 HYLARAWYEAG 730 (1018)
T ss_pred HHHHHHHHHhh
Confidence 77777776655
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-14 Score=128.97 Aligned_cols=440 Identities=14% Similarity=0.167 Sum_probs=284.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHH--cCCChHHH-HHHHHHHHhCCCCCChHhHHHHH
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI--QGKNTQKA-FSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~li 161 (556)
.+=|.+++. ...|.+..+.-+++.|.+.|++.+..+-..|++.-+ ...+.--| .+.|-.|...|-. +..+|.
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sWK--- 191 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSWK--- 191 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-cccccc---
Confidence 344455544 467888999999999999999999888888776543 33333322 2334444444322 333442
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 241 (556)
.|.+.+ -+|+... -+..||.++|.++|+--..+.|.+++++.....| .. +..++|.+|.+-.-.
T Consensus 192 -----~G~vAd--L~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~-kv-~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 192 -----SGAVAD--LLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKG-KV-YREAFNGLIGASSYS-- 255 (625)
T ss_pred -----cccHHH--HHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-ee-eHHhhhhhhhHHHhh--
Confidence 233322 2233222 2557888888888888888888888888776522 22 245667666554322
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH-HH
Q 008727 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE----REVVLKKKRKLGVAPRTNDYREFILGLIVERRICE-AK 316 (556)
Q Consensus 242 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~ 316 (556)
.-.+++.+|....+.||..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ +.
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 226788888888888999999999999888887765 46677888888999998888888888888877654 33
Q ss_pred HHHHHHH----cCCCCC----CHHHHHHHHHHHh-cCChhHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhcCC
Q 008727 317 ELGEVIV----SGKFTI----DDDVLNALIGSVS-SIDPRSAIVFFNFMIEKG----RVPT---LSTLSNLSKNLCKRNK 380 (556)
Q Consensus 317 ~~~~~~~----~~~~~~----~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~g~ 380 (556)
.++.++. ...+.| +...+...+..+. -.|.+.|..+..-+.... +.|+ ..-|..+....|....
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 222222 2233444444433 346666666554443221 1222 2345666777788888
Q ss_pred hHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcC-Ch--------
Q 008727 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED-LL-------- 451 (556)
Q Consensus 381 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~-------- 451 (556)
.+.....|+.|.-.-+.|+..+...++++..-.+.++-.-++|.+++..|...+...-.-++..+++.. +.
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 888888888888777778888888888888888888888888888888775544444444444444433 11
Q ss_pred ------------hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHhhHH---HHHHHH
Q 008727 452 ------------RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-VAPDATTYT---SLLEGL 515 (556)
Q Consensus 452 ------------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~---~l~~~~ 515 (556)
+.....-.++.+ ........+.+.-.+.+.|+.++|.++|....+.+ -.|-....+ .++..-
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a 571 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA 571 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH
Confidence 011111122333 34556677888888999999999999999996654 334444445 556667
Q ss_pred HccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHH
Q 008727 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549 (556)
Q Consensus 516 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 549 (556)
.+.++..+|..+++-|...+...-..+-..+++.
T Consensus 572 ~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~ 605 (625)
T KOG4422|consen 572 KVSNSPSQAIEVLQLASAFNLPICEGLAQRIMED 605 (625)
T ss_pred HhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHh
Confidence 7889999999999999887765444344444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-14 Score=146.36 Aligned_cols=424 Identities=11% Similarity=0.035 Sum_probs=272.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-HHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD-SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
.+.+-...+-...+.|++..|.+.|++..+.. +.+ ..++ .++..+...|+.++|+..+++..... .........+.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA 109 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAA 109 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHH
Confidence 33333344445568888888888888887765 222 2333 77777777788888888888876211 11233334445
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 241 (556)
..+...|++++|+++|+++.+.... +...+..++..+...++.++|++.++.+... .|. ...+..++..+...++
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~-~~~~l~layL~~~~~~ 184 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER---DPT-VQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---Ccc-hHHHHHHHHHHHhcch
Confidence 6777778888888888888776532 3455556667777778888888877777765 222 2223334444434555
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008727 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321 (556)
Q Consensus 242 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 321 (556)
..+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+- |+-.+-..... . +.+.+.+..+.
T Consensus 185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~--l---~~~~~a~~vr~ 252 (822)
T PRK14574 185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ--L---ERDAAAEQVRM 252 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH--H---HHHHHHHHHhh
Confidence 555777777777763 114555666677777777777776655441 22111111000 0 00111111110
Q ss_pred HHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 008727 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK-GRVPT-----LSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395 (556)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 395 (556)
....... ...-+ .-.+.|+.-++.+... +..|. .....-.+-++.+.|++.++++.|+.+...+
T Consensus 253 a~~~~~~-~~~r~---------~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~ 322 (822)
T PRK14574 253 AVLPTRS-ETERF---------DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG 322 (822)
T ss_pred ccccccc-chhhH---------HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Confidence 0000000 00000 0135566666666552 22232 1222344567889999999999999999888
Q ss_pred CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCC----
Q 008727 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG-----LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC---- 466 (556)
Q Consensus 396 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---- 466 (556)
.+....+-.++..+|...+++++|..+++.+.... ..++......|..+|...+++++|..+++.+.+..-
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 66455688899999999999999999999987643 122444467899999999999999999999997310
Q ss_pred -------CCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 467 -------SGN---LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 467 -------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
.|| ...+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|.+.++.....++
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P 481 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAP 481 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence 122 2334556778899999999999999998763 33788888889999999999999999987766655
Q ss_pred c
Q 008727 537 M 537 (556)
Q Consensus 537 ~ 537 (556)
.
T Consensus 482 ~ 482 (822)
T PRK14574 482 R 482 (822)
T ss_pred c
Confidence 4
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.5e-16 Score=137.23 Aligned_cols=274 Identities=12% Similarity=0.067 Sum_probs=132.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhH
Q 008727 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV--ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS 348 (556)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 348 (556)
+.++|+++.|+++++-+.+..-+.-...-+.|...+.- -.++..|.+.-+..+...........|.--.++.+|++++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHH
Confidence 44556666666666555444322222222222222221 2234444444443332211111111111112344556666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008727 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 428 (556)
|.+.+++.+..+.......|++=+ .+-+.|++++|++.|-++...-. .+..+...+...|....+...|++++.+...
T Consensus 509 a~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 666666665544333333333322 24455666666666555443211 1444555555555555666666666555443
Q ss_pred CCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhH
Q 008727 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508 (556)
Q Consensus 429 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 508 (556)
. +..|+.....|...|-+.|+-..|.+.+-+--+. ++.+..+...|..-|....-+++++..|++.. -++|+..-|
T Consensus 587 l-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kw 662 (840)
T KOG2003|consen 587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKW 662 (840)
T ss_pred c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHH
Confidence 3 2234555566666666666666665554433322 34555666666666666666666666666554 345666666
Q ss_pred HHHHHHH-HccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHh
Q 008727 509 TSLLEGL-CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551 (556)
Q Consensus 509 ~~l~~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 551 (556)
..++..| .+.|++++|+++++...++=+ -+...+.-|++.+.
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkfp-edldclkflvri~~ 705 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKFP-EDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCc-cchHHHHHHHHHhc
Confidence 6665544 455666666666665544332 23444444444443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-14 Score=127.28 Aligned_cols=243 Identities=14% Similarity=0.104 Sum_probs=175.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHH
Q 008727 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160 (556)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (556)
+.+..+|..+|.++++-...+.|.+++++......+.+..+||.+|.+-.-... .+++.+|......||..++|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 346678888898888888888898888888887778888888888876543222 6788888888888899999999
Q ss_pred HHHHHhcCCHhH----HHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHH-HHHHHHHHHhc------cCCCCCchhhH
Q 008727 161 LAVLASDGYIDN----ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ-VLSMLDEVRKR------ENSMINGSVIA 229 (556)
Q Consensus 161 i~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~------~~~~~~~~~~~ 229 (556)
+++.++.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+ +..++.++... ....|.+...+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999888887665 46677788888999999999888888888877644 44444444321 13345566666
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCC----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 008727 230 VLIIHGFCKGKRVEEAFKVLDELRIRE----CKPDF---IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302 (556)
Q Consensus 230 ~~li~~~~~~~~~~~A~~~~~~m~~~~----~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 302 (556)
...+..|.+..+.+.|.++-.-..... +.|+. .-|..+....++....+.-...|+.|.-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 777777778888888877765554321 23332 23555666777777777778888888777777777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCC
Q 008727 303 ILGLIVERRICEAKELGEVIVSGKF 327 (556)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~~ 327 (556)
+++....|.++-.-+++..++..|.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhh
Confidence 7777777777777777666655443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-11 Score=119.20 Aligned_cols=471 Identities=13% Similarity=0.053 Sum_probs=326.0
Q ss_pred hhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHH
Q 008727 58 PYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQK 137 (556)
Q Consensus 58 ~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 137 (556)
.+++++...|.+++..+.++.+ .....|..|..+|-..|+.+++...+-.+.... +-|...|..+.....+.|+++.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHH
Confidence 3556889999999999988764 567789999999999999999988766555544 5677999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHH----HHHHHhhCcHHHHHHHHH
Q 008727 138 AFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF----IWKFCENAKLGQVLSMLD 213 (556)
Q Consensus 138 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~ 213 (556)
|.-+|.+.....++ +...+---...|-+.|+...|.+-|.++.+...+.|..-+..+ +..+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999987544 6666666788899999999999999999987643343333333 444566677799999999
Q ss_pred HHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHH----------------------HH----HH
Q 008727 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA----------------------YR----IV 267 (556)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~----------------------~~----~l 267 (556)
..... +....+...++.++..|.+...++.|......+..+..++|..- |. -+
T Consensus 305 ~~~s~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 305 GALSK-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHhh-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 88875 44455566778899999999999999999888876222222211 11 12
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cC
Q 008727 268 AEEFKLMGSVFEREVVLKKKRKLG--VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SI 344 (556)
Q Consensus 268 l~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 344 (556)
.-++.+....+....+........ +.-+...|..+..++...|++..|..++..+......-+..+|-.+-.++. .+
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 223344444444455555555555 333455788888899999999999999999998877777777777777766 58
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--------CCCCccHhhHHHHHHHHHhcCCH
Q 008727 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA--------NDYFTDMESYNVMVSFLCTSGRL 416 (556)
Q Consensus 345 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~~~~ 416 (556)
..+.|++.|+..+.... .+...-..|-..+.+.|+.++|.+++..+.. .+..|+....-.....+.+.|+.
T Consensus 464 e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 89999999999887642 2344445566778899999999999988653 22334444455555667778888
Q ss_pred HHHHHHHHHHHHCCC-----CC-----------------CHhHHHHHHHHHhhcCChhhHHHHHHHH------HHcCCCC
Q 008727 417 REAYGVIQEMKRKGL-----DP-----------------DVSFYNSLMEACCREDLLRPAKKLWDQM------FASGCSG 468 (556)
Q Consensus 417 ~~a~~~~~~m~~~~~-----~p-----------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~------~~~~~~~ 468 (556)
++=+.+...|...+. -| ...+...++.+-.+.++.....+-...- ...|+..
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 776655555543211 01 1122223333333333322222111111 1112222
Q ss_pred CH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHh----hHHHHHHHHHccCCHHHHHHHHHHhhhC
Q 008727 469 NL--KTYNILISKFSEVGEIEGALRLFHNMLEKGV-APDAT----TYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (556)
Q Consensus 469 ~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 534 (556)
+. ..+.-++.++++.+++++|+.+...+..... .-+.. .-...+.+.+..+++..|.+.++.|+..
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 22 3456677889999999999999999987531 11222 2244566778899999999999999776
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.2e-13 Score=119.47 Aligned_cols=463 Identities=10% Similarity=0.047 Sum_probs=320.2
Q ss_pred CCHHHHHHHhhhhhccC-hhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH----Hh
Q 008727 47 LSPSLVARVINPYLLTH-HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDS----SV 121 (556)
Q Consensus 47 ~~~~~~~~~l~~~~~~~-~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 121 (556)
++-+++..+.+.+..++ ..+|+..+.-..+..-|+.....--.+...+.+.+++.+|+++++-....-...+. ..
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 67777777777776554 66899888877665555444444445667888999999999999877765322233 34
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhh--------HH
Q 008727 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG--------FG 193 (556)
Q Consensus 122 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--------~~ 193 (556)
.+.+.-.+.+.|+++.|+..|+...+. .|+..+--.|+-++..-|+.++..+.|..|+.-...||..- -.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 555566788999999999999998876 45666555566666678999999999999976543333221 12
Q ss_pred HHHHHHHhh---------C--cHHHHHHHHHHHHhccCCCCCchh---------------------hHHHHHHHHhccCC
Q 008727 194 VFIWKFCEN---------A--KLGQVLSMLDEVRKRENSMINGSV---------------------IAVLIIHGFCKGKR 241 (556)
Q Consensus 194 ~li~~~~~~---------g--~~~~a~~~~~~~~~~~~~~~~~~~---------------------~~~~li~~~~~~~~ 241 (556)
.|+.-..+. + +.++++-.--.+.. .+..++.. .-..-..-+.++|+
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia--pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA--PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc--cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 233222222 1 11222211111111 11111100 00012344778999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008727 242 VEEAFKVLDELRIRECKPDFIAYRIV--AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319 (556)
Q Consensus 242 ~~~A~~~~~~m~~~~~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 319 (556)
++.|.+++.-+.++.-+.-+..-+.| +..+..-.++..|.++-+...... ..+......--......|++++|.+.+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 99999999988776433222222322 222222346677776665544321 111111111112344679999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcc
Q 008727 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399 (556)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 399 (556)
.+.+..........||.-+.+-..|++++|++.|-++..- +..+..++..+.+.|-...+...|++++.+.... ++.|
T Consensus 514 keal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~d 591 (840)
T KOG2003|consen 514 KEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPND 591 (840)
T ss_pred HHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCC
Confidence 9999988777888899999888899999999999877432 2235667777888899999999999999887665 3448
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008727 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (556)
Q Consensus 400 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (556)
+.+.+-+...|-+.|+-..|.+.+-+--+- +..+..+...|...|....-+++++.+|++..- +.|+..-|..++..
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmias 668 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHH
Confidence 889999999999999999999887665443 445788889999999999999999999998765 68999999998866
Q ss_pred HH-ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 008727 480 FS-EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (556)
Q Consensus 480 ~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 520 (556)
|. +.|++.+|.++++....+ ++-|..++.-|++.+...|.
T Consensus 669 c~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 54 689999999999998765 77788999999998888775
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.8e-11 Score=110.37 Aligned_cols=428 Identities=11% Similarity=0.043 Sum_probs=223.9
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHH----HhCCCCCChHhHHHHHHHHHhcC
Q 008727 93 SLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV----KFNCEDIGPEICNSLLAVLASDG 168 (556)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g 168 (556)
+|++..-++.|..+++...+. ++.+...|..-...=-..|+.+...++.+.- ...|+..+...|-.=...|-..|
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 344444455555555554442 3444555544444444455555555554432 23455555555555555555555
Q ss_pred CHhHHHHHHHHHHhCCCccC--hhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHH
Q 008727 169 YIDNALKMFDEMSHRGVEFS--TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246 (556)
Q Consensus 169 ~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 246 (556)
..-.+..+....+.-|+.-. ..||..-.+.|.+.+.++-|..+|....+. .|....+|...+..--..|..++..
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv---fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV---FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 55555555555554444321 235555555566666666666666666544 5555556655555555566666666
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 008727 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326 (556)
Q Consensus 247 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (556)
.+|++.... ++-....|-.....+-..|++..|..++.+..+.... +...+...+.....+..++.|..+|.+....
T Consensus 571 Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 571 ALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 666666554 1223334444444555566666666666666554332 4445555566666666666666666665542
Q ss_pred CCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHH
Q 008727 327 FTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPT-LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404 (556)
Q Consensus 327 ~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 404 (556)
.++..+|.--+.. ...++.++|++++++.++. -|+ ...|..+...+-..++++.|.+.|..-.+. ++-.+..|-
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWl 723 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWL 723 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHH
Confidence 2333343333322 2235556666666555443 222 333444444555555555555555443332 112333555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHc----C---------------
Q 008727 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS----G--------------- 465 (556)
Q Consensus 405 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--------------- 465 (556)
.+...--+.|.+-.|..+|++..-++.+ +...|-..|++-.+.|+.+.|..+..+..+. |
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 5555555556666666666666555544 5556666666666666666666555544432 0
Q ss_pred ----------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 466 ----------CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 466 ----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
+.-|++..-.+...|....++++|.+.|.+....+.. +..+|.-+...+.+.|.-++-.+++++...
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 1223444444445555555566666666666544221 344555555555666655555555555543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-10 Score=107.08 Aligned_cols=409 Identities=8% Similarity=-0.039 Sum_probs=304.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH----hHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-
Q 008727 79 NFTHSPLSYHSILKSLSLSRQINAIDSVLKQ----VKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG- 153 (556)
Q Consensus 79 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~- 153 (556)
.++-++..|.+-...=-+.|+.+.+.+++++ +...|+..+...|..=...|-..|..-.+..+...+...|++-.
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 4456777777666666678999999888765 45578889999999999999999999999999999988776532
Q ss_pred -hHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHH
Q 008727 154 -PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232 (556)
Q Consensus 154 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 232 (556)
..+|+.-.+.|.+.+.++-|..+|....+-- +-+...|..+...--..|..+....+|++.... .|.....|-..
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pkae~lwlM~ 590 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPKAEILWLMY 590 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcchhHHHHH
Confidence 2488899999999999999999999888753 335567777666666678888888999888876 66667777777
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 008727 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312 (556)
Q Consensus 233 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 312 (556)
...+-..|++..|..++....+.... +...|-+-+..-..+.+++.|..+|.+.... .|+...|.--+...--.+..
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhH
Confidence 77778889999999998888776433 5667888888888888999999998887664 44555555545545556788
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHH-HHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008727 313 CEAKELGEVIVSGKFTIDDDVLNALI-GSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390 (556)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 390 (556)
++|.++++..++.-+ +-.-+-.++ ..+. .++.+.|.+.|..-.+. ++...-.|..+.+.--+.|++-.|..+++.
T Consensus 668 eeA~rllEe~lk~fp--~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 668 EEALRLLEEALKSFP--DFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHHHHHHhCC--chHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 888888888777532 222222222 2222 35677777666544332 223345566666666777888888888888
Q ss_pred HHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------------------------CCCCHhHHHHH
Q 008727 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG-----------------------------LDPDVSFYNSL 441 (556)
Q Consensus 391 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----------------------------~~p~~~~~~~l 441 (556)
..-.++. +...|-..|++-.+.|+.+.|..+..+..+.- +.-|+.....+
T Consensus 745 arlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllai 823 (913)
T KOG0495|consen 745 ARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAI 823 (913)
T ss_pred HHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHH
Confidence 8877766 77788888888888888888887777655431 12244555666
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
...|-....+++|.+.|.+..+.+ +.+..+|..+...+.++|.-++-.++++.....
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 666777778999999999999875 556788999999999999999999999888765
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-11 Score=120.89 Aligned_cols=383 Identities=12% Similarity=0.082 Sum_probs=229.1
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHh
Q 008727 92 KSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYID 171 (556)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 171 (556)
..+...|+.+.|..++.++++.. +.....|..|...|-+.|+.+++...+-...-..++ |...|-.+-....+.|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHH
Confidence 33445699999999999999876 678889999999999999999999888777665544 7789999999999999999
Q ss_pred HHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhh-----HHHHHHHHhccCCHHHHH
Q 008727 172 NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI-----AVLIIHGFCKGKRVEEAF 246 (556)
Q Consensus 172 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~~~~~~A~ 246 (556)
+|.-.|.+.++... ++...+---+..|-+.|+...|...|.++.+. .|+...- -..+++.|...++-+.|.
T Consensus 225 qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~---~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 225 QARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQL---DPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred HHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999988753 33333334455788889999999999999876 3322111 123567777788878888
Q ss_pred HHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH--
Q 008727 247 KVLDELRIR-ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV-- 323 (556)
Q Consensus 247 ~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-- 323 (556)
+.++..... +-..+...++.++..+.+...++.+......+......+|..-+..--. + ..-+....
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~-----~-----~~~~~~~~~~ 370 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER-----R-----REEPNALCEV 370 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh-----c-----cccccccccC
Confidence 888877653 2234556788888888888889998888877766433333322210000 0 00000000
Q ss_pred cCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHh
Q 008727 324 SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG--RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401 (556)
Q Consensus 324 ~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 401 (556)
..+..++..++..++....-...+....+...+.+.. +.-+...|..+..+|...|++.+|..+|..+......-+..
T Consensus 371 ~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 371 GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 0112222222233333222222222222222233333 22234555556666666666666666666666554444555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHH--------cCCCCCHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA--------SGCSGNLKTY 473 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~ 473 (556)
.|-.+.++|...|..++|.+.++........ +...-..|-..+-+.|+.++|.+.++.+.. .+..|+....
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 6666666666666666666666666554221 223334444555566666666666665431 1223333333
Q ss_pred HHHHHHHHccCCHHHHHH
Q 008727 474 NILISKFSEVGEIEGALR 491 (556)
Q Consensus 474 ~~li~~~~~~g~~~~A~~ 491 (556)
-...+.+.+.|+.++=..
T Consensus 530 ~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhhhHHHHHH
Confidence 334444555555554333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-10 Score=102.96 Aligned_cols=454 Identities=10% Similarity=-0.003 Sum_probs=327.3
Q ss_pred hHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHH
Q 008727 65 SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144 (556)
Q Consensus 65 ~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 144 (556)
..|-+.|..+.... ..+...|-..+..=.+.+.+..|..+++.....- |--...|---+-+=-..|++..|.++|+.
T Consensus 90 ~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 90 QRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 35666666654322 3455677777888888999999999999988753 22233444445555567999999999999
Q ss_pred HHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCC
Q 008727 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224 (556)
Q Consensus 145 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 224 (556)
..+. .|+..+|++.|+.=.+.+..+.|..+|++..-. .|+..+|......--+.|....+..+|+...+.-|....
T Consensus 167 W~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 167 WMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 8875 789999999999999999999999999998864 589999998888888899999999999988876454444
Q ss_pred chhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH--------HHHHhcCCCCC
Q 008727 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD-FIAYRIVAEEFKLMGSVFEREVVL--------KKKRKLGVAPR 295 (556)
Q Consensus 225 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~--------~~~~~~~~~~~ 295 (556)
....+++....=.++..++.|.-+|.-..+.-.+-. ...|..+...=-+.|+.....+.. +.+.+. -..|
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~n 321 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCC
Confidence 455666666666677888889888888776521111 334555544444556554443332 222222 1224
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHH-HHHHHHH---------HHhcCChhHHHHHHHHHHHcCCCCCH
Q 008727 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD-VLNALIG---------SVSSIDPRSAIVFFNFMIEKGRVPTL 365 (556)
Q Consensus 296 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~ 365 (556)
-.++-..++..-..|+.+...++++..+..-++.... .|...+- -+...|.+.+.++++..++ -++...
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkk 400 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKK 400 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCccc
Confidence 4466667777777899999999999999876554332 2322221 1234689999999999888 344456
Q ss_pred HHHHHHHHHH----HhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 008727 366 STLSNLSKNL----CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441 (556)
Q Consensus 366 ~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 441 (556)
.||.-+=-.| .+..++..|.+++..... .-|-..++...|..-.+.++++.+..++++..+.++. |..+|...
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~ky 477 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKY 477 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHH
Confidence 6776654444 467889999999988764 3467788999999999999999999999999998765 78888888
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH----
Q 008727 442 MEACCREDLLRPAKKLWDQMFASG-CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC---- 516 (556)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~---- 516 (556)
...-...|+.+.|..+|+-+++.. +......|.+.|+-=...|.++.|..+++++++. .+...+|.+...-=.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccc
Confidence 888888999999999999998742 2223455666666667899999999999999976 233445655543222
Q ss_pred -ccC-----------CHHHHHHHHHHhh
Q 008727 517 -QET-----------NLQAAFEVFNKSV 532 (556)
Q Consensus 517 -~~g-----------~~~~a~~~~~~m~ 532 (556)
+.| ....|..+|++..
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHH
Confidence 334 4667888888763
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.9e-12 Score=122.89 Aligned_cols=219 Identities=13% Similarity=0.171 Sum_probs=161.5
Q ss_pred hhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh
Q 008727 75 SQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP 154 (556)
Q Consensus 75 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 154 (556)
.+..|..|+.++|.++|..|+..|+.+.|- +|..|.-...+.+...++.++.+..+.++.+.+. .|.+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 356788999999999999999999999998 9999998888889999999999999999987776 6688
Q ss_pred HhHHHHHHHHHhcCCHhH---HHHHHHHHHh----CCC-----------------ccChhhHHHHHHHHHhhCcHHHHHH
Q 008727 155 EICNSLLAVLASDGYIDN---ALKMFDEMSH----RGV-----------------EFSTIGFGVFIWKFCENAKLGQVLS 210 (556)
Q Consensus 155 ~~~~~li~~~~~~g~~~~---a~~~~~~m~~----~~~-----------------~~~~~~~~~li~~~~~~g~~~~a~~ 210 (556)
.+|..|..+|...|+... +.+.++.+.. .|+ -||..+ ++....-.|-++.+++
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLK 160 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHH
Confidence 999999999999998544 4443333322 221 122211 2222333455555544
Q ss_pred HHHHHHhc----------------------------cCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHH
Q 008727 211 MLDEVRKR----------------------------ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262 (556)
Q Consensus 211 ~~~~~~~~----------------------------~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 262 (556)
++..+... .....++..++.+++..-...|+.+.|..++.+|+++|+..+.+
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 44222110 01123446677788888888999999999999999999888887
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 008727 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311 (556)
Q Consensus 263 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 311 (556)
-|-.|+-+ .++...++.+++-|.+.|+.|+..|+...+..+..+|.
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 77776655 78888888899999999999999998887777766544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.1e-12 Score=121.65 Aligned_cols=295 Identities=9% Similarity=-0.054 Sum_probs=141.1
Q ss_pred cCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHH
Q 008727 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210 (556)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 210 (556)
..|+++.|.+.+.+..+.... ....+-....+..+.|+.+.|.+.|.+..+....+...........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 356666666666655544221 1222233344555556666666666665543211111122223445555666666666
Q ss_pred HHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHH
Q 008727 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR-IVAEEF---KLMGSVFEREVVLKK 286 (556)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~---~~~~~~~~a~~~~~~ 286 (556)
.++.+.+. .|.+..+...+...+...|++++|.+.+..+.+.++. +...+. .-..++ ...+..+++.+.+..
T Consensus 175 ~l~~l~~~---~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 175 GVDKLLEM---APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 66666655 4555555556666666666666666666666665433 222121 111111 111111111222222
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 008727 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLS 366 (556)
Q Consensus 287 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 366 (556)
+.+..... .+.+..
T Consensus 251 ~~~~~p~~------------------------------------------------------------------~~~~~~ 264 (409)
T TIGR00540 251 WWKNQPRH------------------------------------------------------------------RRHNIA 264 (409)
T ss_pred HHHHCCHH------------------------------------------------------------------HhCCHH
Confidence 22211000 011333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHH
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES-YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV--SFYNSLME 443 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~ 443 (556)
.+..+...+...|+.+.|.+++++..+..+...... ...........++.+.+.+.++...+.... |. ....++..
T Consensus 265 l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~ 343 (409)
T TIGR00540 265 LKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQ 343 (409)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHH
Confidence 344444455555555555555555555432211111 011111112234556666666665554221 22 34456666
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
.+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 344 l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 344 LLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666667777777766643333235666666666667777777777777766654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.3e-12 Score=119.65 Aligned_cols=283 Identities=8% Similarity=-0.006 Sum_probs=157.1
Q ss_pred CCChHHHHHHHHHHHhCCCCCChHh-HHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHH--HHHHHHHhhCcHHHH
Q 008727 132 GKNTQKAFSVFNEVKFNCEDIGPEI-CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG--VFIWKFCENAKLGQV 208 (556)
Q Consensus 132 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~a 208 (556)
.|+++.|.+.+....+... ++.. |-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 5777777766666544321 2222 222233446667777777777777654 23332222 234566667777777
Q ss_pred HHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHH-------HHHHHHHHHHhcCCHHHHH
Q 008727 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI-------AYRIVAEEFKLMGSVFERE 281 (556)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-------~~~~ll~~~~~~~~~~~a~ 281 (556)
...++.+.+. .|.+..+...+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...
T Consensus 173 l~~l~~~~~~---~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 173 RHGVDKLLEV---APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHhc---CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 7777777655 56666666777777777777777777777777665432111 1111121111122222222
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 008727 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361 (556)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 361 (556)
++++.+.+. .
T Consensus 250 ~~w~~lp~~----------------------------------------------------------------------~ 259 (398)
T PRK10747 250 RWWKNQSRK----------------------------------------------------------------------T 259 (398)
T ss_pred HHHHhCCHH----------------------------------------------------------------------H
Confidence 222221110 0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 008727 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441 (556)
Q Consensus 362 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 441 (556)
+.+......+...+...|+.++|.+++++..+.. |+... .++.+....++.+++++..+...+.... |...+..+
T Consensus 260 ~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~l 334 (398)
T PRK10747 260 RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTL 334 (398)
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHH
Confidence 1234444455555666666666666666665532 23211 1223333446667777777666665332 44556666
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
...|.+.+++++|.+.|+.+.+. .|+...|..+..++.+.|+.++|.+++++...
T Consensus 335 grl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66777777777777777777663 56666666677777777777777777766543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.7e-12 Score=120.25 Aligned_cols=292 Identities=10% Similarity=-0.019 Sum_probs=171.6
Q ss_pred hhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008727 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280 (556)
Q Consensus 201 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 280 (556)
..|+++.|.+.+....+. .|.+...+-.....+...|+.+.|.+.+.+..+....++..........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 446666666666555443 22223333344455555566666666665554432111111222234445555555555
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 008727 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG 360 (556)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~ 360 (556)
.+.++.+.+.... +......+...+...|+++.+.+.+..+ .+.+
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l----------------------------------~k~~ 217 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNM----------------------------------AKAG 217 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHH----------------------------------HHcC
Confidence 5555555554311 2223444444555555555555554444 4443
Q ss_pred CCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHhCCCC---ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008727 361 RVPTLSTLSNLSKN---LCKRNKSDELVEVYKVLSANDYF---TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434 (556)
Q Consensus 361 ~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 434 (556)
..+.......-..+ ....+..+...+.+..+.+..+. .+...+..+...+...|+.++|.+++++..+.. ||
T Consensus 218 ~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd 295 (409)
T TIGR00540 218 LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GD 295 (409)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CC
Confidence 32211111111111 12222222223344443333221 277889999999999999999999999999874 44
Q ss_pred HhH---HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 008727 435 VSF---YNSLMEACCREDLLRPAKKLWDQMFASGCSGNL--KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509 (556)
Q Consensus 435 ~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 509 (556)
... ...........++.+.+.+.++...+.. +-|+ ....++...+.+.|++++|.+.|+........|+...+.
T Consensus 296 ~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~ 374 (409)
T TIGR00540 296 DRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA 374 (409)
T ss_pred cccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH
Confidence 332 1222222334577888999998888752 3344 567789999999999999999999654445579999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhh
Q 008727 510 SLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
.+...+.+.|+.++|.+++++...
T Consensus 375 ~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 375 MAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999998643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=132.78 Aligned_cols=219 Identities=15% Similarity=0.112 Sum_probs=112.0
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 008727 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388 (556)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 388 (556)
.++.+.|.+.++.+...+.. ++..+..++..+..+++++|.+++....+.. ++...+..++..+...++++++.+++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKA-NPQDYERLIQLLQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHH
Confidence 33444444444444333222 2333444444444556666666665544432 45566677788888999999999999
Q ss_pred HHHHhCC-CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCC
Q 008727 389 KVLSAND-YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467 (556)
Q Consensus 389 ~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 467 (556)
+.+.... .+.+...|..+...+.+.|+.++|++.+++..+..+. |......++..+...|+.+++.++++...+.. +
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~ 211 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-P 211 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--H
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-c
Confidence 9877533 3457778888899999999999999999999987433 57778889999999999999999998888764 5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
.|+..+..+..+|...|+.++|+..|++..... +.|......+..++...|+.++|.++..+..+
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred CHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 667788899999999999999999999988752 33788888889999999999999999887644
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-11 Score=117.94 Aligned_cols=291 Identities=12% Similarity=0.024 Sum_probs=188.4
Q ss_pred hCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHhcCCHHH
Q 008727 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR--IVAEEFKLMGSVFE 279 (556)
Q Consensus 202 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~ 279 (556)
.|+++.|++.+...... .......+........+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 56777776666654433 1111223333344446666777777777666554 33433222 22445566666666
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 008727 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK 359 (556)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ 359 (556)
|.+.++++.+.... +......+...|.+.|+++++.+++..+.+.....+. ....+-
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~--------------------- 228 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE--------------------- 228 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH---------------------
Confidence 66666666554321 2334445555666666666666665555544322111 000000
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 008727 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439 (556)
Q Consensus 360 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 439 (556)
...|..++.......+.+...++++.+.+.- +.++.....+...+...|+.++|.+++++..+. .||....
T Consensus 229 -----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~- 299 (398)
T PRK10747 229 -----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV- 299 (398)
T ss_pred -----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH-
Confidence 0122233333334455666667777665432 247778899999999999999999999999885 4444322
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 008727 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519 (556)
Q Consensus 440 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 519 (556)
++.+....++.+++.+..+...+.. +-|...+..+...|.+.|++++|.+.|+.+.+. .|+..++..+...+.+.|
T Consensus 300 -~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g 375 (398)
T PRK10747 300 -LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLH 375 (398)
T ss_pred -HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcC
Confidence 3344456699999999999998764 556777889999999999999999999999965 799999999999999999
Q ss_pred CHHHHHHHHHHhhh
Q 008727 520 NLQAAFEVFNKSVN 533 (556)
Q Consensus 520 ~~~~a~~~~~~m~~ 533 (556)
+.++|.+++++...
T Consensus 376 ~~~~A~~~~~~~l~ 389 (398)
T PRK10747 376 KPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998754
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=131.39 Aligned_cols=262 Identities=13% Similarity=0.070 Sum_probs=95.3
Q ss_pred HHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008727 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275 (556)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 275 (556)
...+...|++++|+++++..... ...+.+...|..+...+-..++++.|.+.++++...+.. +...+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 33444445555555555332222 111233333344444444455555555555555544221 23334344443 4455
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHH
Q 008727 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355 (556)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~ 355 (556)
++++|.+++....+.. ++...+..++..+...++++++.++++.+...
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------------------------------ 139 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEEL------------------------------ 139 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-------------------------------
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------------------------------
Confidence 5555555544433321 22233333444444444444444443333211
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008727 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435 (556)
Q Consensus 356 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 435 (556)
.....+...|..+...+.+.|+.++|.+.+++..+..+. |....+.++..+...|+.+++.++++...+.. ..|.
T Consensus 140 ---~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~ 214 (280)
T PF13429_consen 140 ---PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDP 214 (280)
T ss_dssp ---T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSC
T ss_pred ---cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHH
Confidence 112345666777777788888888888888888876654 57778888888888888888888888777653 3355
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
..+..+..+|...|+.++|...|++..+.. +.|+.....+.+++...|+.++|.++.++...
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 677788888888889999999988888764 55788888888888889999888888877643
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.7e-11 Score=101.78 Aligned_cols=289 Identities=11% Similarity=0.069 Sum_probs=152.7
Q ss_pred CCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCch--hhHHHHHHHHhccCCHHHH
Q 008727 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS--VIAVLIIHGFCKGKRVEEA 245 (556)
Q Consensus 168 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A 245 (556)
.+.++|.++|-+|.+.+. -+..+.-+|-+.|-+.|..|.|+++.+.+..+ +..+... .+...|..-|...|-+|.|
T Consensus 49 ~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred cCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 345555555555554321 12233334445555555555555555555544 1111111 1223466777788888888
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHH
Q 008727 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN----DYREFILGLIVERRICEAKELGEV 321 (556)
Q Consensus 246 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~ 321 (556)
+++|..+.+.|. --......|+..|-...+|++|+++-+++.+.+-.+... -|..+...+....+.+.|..++..
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888888876532 134556678888888888888888888877765544332 233344444444555555555555
Q ss_pred HHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHh
Q 008727 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401 (556)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 401 (556)
..+.++. .+..--.+.+.....|++..|.+.++.+.+.++.--..
T Consensus 206 Alqa~~~-----------------------------------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~e 250 (389)
T COG2956 206 ALQADKK-----------------------------------CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSE 250 (389)
T ss_pred HHhhCcc-----------------------------------ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHH
Confidence 4443221 11112223344555666666666666666654443344
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
+...+..+|.+.|+.++...++..+.+... +...-..+-..-....-.+.|..++.+-.+. .|+...+..++..-.
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 555666666666666666666666665432 2222223333323333344444444333332 566666666665543
Q ss_pred c---cCCHHHHHHHHHHHHH
Q 008727 482 E---VGEIEGALRLFHNMLE 498 (556)
Q Consensus 482 ~---~g~~~~A~~~~~~m~~ 498 (556)
. .|...+-+.+++.|..
T Consensus 327 ~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 327 ADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccccccchhhhHHHHHHHHH
Confidence 2 3345555555666654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.7e-10 Score=100.01 Aligned_cols=379 Identities=12% Similarity=0.058 Sum_probs=243.1
Q ss_pred CCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCC--Cchhh
Q 008727 151 DIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI--NGSVI 228 (556)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~ 228 (556)
..|...+-.....+.+.|..+.|++.|......- +-.-..|..|.... -+. +........ .+ .....
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~----e~~~~l~~~---l~~~~h~M~ 229 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDI----EILSILVVG---LPSDMHWMK 229 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chH----HHHHHHHhc---CcccchHHH
Confidence 3355555555666677788888888887776541 11222232222211 122 222222111 11 11111
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHH
Q 008727 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV--APRTNDYREFILGL 306 (556)
Q Consensus 229 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~ 306 (556)
-..+..++-...+.+++..-.+.....|+.-+...-+....+.....++++|+.+|+++.+... .-|..+|..++-.-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 1235556666667788888887777777654444444444455677888999999998887621 12445665555332
Q ss_pred HhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008727 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385 (556)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 385 (556)
-....+.--.+..-.+- ...+.+...+-+.|+ +++.++|...|+..++.+.. ....++.+..-|....+...|.
T Consensus 310 ~~~skLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 310 NDKSKLSYLAQNVSNID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhhHHHHHHHHHHHHhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 22222111111111111 122334444445555 46788999999988876532 4566777778899999999999
Q ss_pred HHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 008727 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465 (556)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 465 (556)
+-++...+..+. |-..|-.+.++|.-.+...=|+-+|++..+..+. |...|.+|..+|.+.++.++|++.|......|
T Consensus 385 ~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 999999987765 8889999999999999999999999998886433 78899999999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCCHhhH--HHHHHHHHccCCHHHHHHHHHHhhhCCCccc
Q 008727 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK----GVAPDATTY--TSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539 (556)
Q Consensus 466 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 539 (556)
..+...+..|.+.|-+.++.++|...|++.++. |..-+.... --|..-+.+.+++++|..+....... .+.
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e 539 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETE 539 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--Cch
Confidence 556788899999999999999999988887652 433221211 22344567888999988877766554 333
Q ss_pred HHHHHHHHHHH
Q 008727 540 RSILSTFMISL 550 (556)
Q Consensus 540 ~~~~~~l~~~~ 550 (556)
..--..|++.+
T Consensus 540 ~eeak~LlRei 550 (559)
T KOG1155|consen 540 CEEAKALLREI 550 (559)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.1e-12 Score=119.04 Aligned_cols=288 Identities=10% Similarity=0.013 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008727 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE--CKPDFIAYRIVAEEFKLMGSVFEREV 282 (556)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~ 282 (556)
..+|+..|..+... .++...+...+..+|...+++++|.++|+.+++.. ..-+...|.+.+-.+-+. -++.
T Consensus 335 ~~~A~~~~~klp~h---~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 335 CREALNLFEKLPSH---HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHhhHHh---cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 44555555554433 33334444555666666666666666666665431 111444555554433221 1111
Q ss_pred HHH-HHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 008727 283 VLK-KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361 (556)
Q Consensus 283 ~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 361 (556)
.+. .+... -.-.+.+|.++..+|.-+++.+.|.+.|+..++.++
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp---------------------------------- 452 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP---------------------------------- 452 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC----------------------------------
Confidence 111 11111 112334566666666666666665555555544311
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 008727 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441 (556)
Q Consensus 362 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 441 (556)
-..++|+.+..-+.....+|.|...|+......+. +-..|-.+.-.|.+.++++.|+-.|+...+.+.. +.+....+
T Consensus 453 -~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~ 529 (638)
T KOG1126|consen 453 -RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHI 529 (638)
T ss_pred -ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhh
Confidence 13445555555556666777777777766654322 2334444556677778888888888777776544 56666677
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCC
Q 008727 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETN 520 (556)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 520 (556)
...+.+.|+.++|+++++++...+ +.|+..--..+..+...++.++|+..++++++. .| +...|..+...|.+.|+
T Consensus 530 g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 530 GRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred hHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHcc
Confidence 777777788888888888777654 344444444556667777888888888887754 33 34556666677778888
Q ss_pred HHHHHHHHHHhhhCCCcccH
Q 008727 521 LQAAFEVFNKSVNHDVMLAR 540 (556)
Q Consensus 521 ~~~a~~~~~~m~~~~~~~~~ 540 (556)
.+.|+.-|--+.+.+++...
T Consensus 607 ~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 607 TDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred chHHHHhhHHHhcCCCccch
Confidence 88888877777777776665
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-10 Score=103.56 Aligned_cols=292 Identities=12% Similarity=0.114 Sum_probs=140.9
Q ss_pred cCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHH
Q 008727 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246 (556)
Q Consensus 167 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 246 (556)
.|++.+|+++..+-.+.+-. ....|.....+.-..||.+.+-.++.+..+..+ . +.....-+........|+++.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-~-~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-D-DTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC-C-chHHHHHHHHHHHHhCCCchhHH
Confidence 36677777777666555433 223444445555566666666666666655411 1 11233444555566666666666
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 008727 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326 (556)
Q Consensus 247 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (556)
.-.+++.+.+.. +.........+|.+.|++.....++..+.+.|.--+...-. +
T Consensus 174 ~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~-----------------l-------- 227 (400)
T COG3071 174 ENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR-----------------L-------- 227 (400)
T ss_pred HHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-----------------H--------
Confidence 666666555322 44455566666666666666666666666655443322100 0
Q ss_pred CCCCHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHH
Q 008727 327 FTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405 (556)
Q Consensus 327 ~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 405 (556)
...+|+.++.-.... +.+.-...++... ...+-++..-..++.-+..+|+.++|.++.++..+++..|+. .
T Consensus 228 ---e~~a~~glL~q~~~~~~~~gL~~~W~~~p-r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~ 299 (400)
T COG3071 228 ---EQQAWEGLLQQARDDNGSEGLKTWWKNQP-RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----C 299 (400)
T ss_pred ---HHHHHHHHHHHHhccccchHHHHHHHhcc-HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----H
Confidence 011122222221111 1111111222211 112233444444555555556666666555555555444331 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 008727 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485 (556)
Q Consensus 406 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 485 (556)
..-.+.+-++.+.-++..+.-.+.... ++..+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+.++|.+.|+
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGE 376 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCC
Confidence 111223344444444444443332111 234455555555555555566555554444 24555555555555555565
Q ss_pred HHHHHHHHHHHHH
Q 008727 486 IEGALRLFHNMLE 498 (556)
Q Consensus 486 ~~~A~~~~~~m~~ 498 (556)
+.+|.++.++...
T Consensus 377 ~~~A~~~r~e~L~ 389 (400)
T COG3071 377 PEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.3e-09 Score=93.71 Aligned_cols=441 Identities=10% Similarity=0.011 Sum_probs=315.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
+...|-...+-=..++++..|..+|+..+.-. ..+...|..-+..=.+++.+..|..+++.....-+. -...|--.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHH
Confidence 44455555555566889999999999998865 566777888888888999999999999998775222 2346666666
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCH
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 242 (556)
+=-..|++..|.++|++-.+. .|+...|.+.|+.-.+.+.++.|..+++...-. . |....|.-....=-++|+.
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~---H-P~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV---H-PKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---c-ccHHHHHHHHHHHHhcCcH
Confidence 667789999999999998775 799999999999999999999999999999754 3 4477777777777889999
Q ss_pred HHHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHH-
Q 008727 243 EEAFKVLDELRIR-EC-KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR-TNDYREFILGLIVERRICEAKEL- 318 (556)
Q Consensus 243 ~~A~~~~~~m~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~- 318 (556)
..|..+|+...+. |- .-+...++++...=.+...++.|.-+|+-.+..-.+-. ...|..+...--+-|+.......
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 9999999987654 10 11223344444434456678888888887776522211 22344444433344554443332
Q ss_pred -------HHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCH-H-----HHHHH---HHHHHhcCCh
Q 008727 319 -------GEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTL-S-----TLSNL---SKNLCKRNKS 381 (556)
Q Consensus 319 -------~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~-~-----~~~~l---l~~~~~~g~~ 381 (556)
++.....++ .+-.+|--.+.... .|+.+...++|+.....-.+.+. . .|.-+ +-.-....+.
T Consensus 304 v~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344444433 34455555555543 48999999999998865332221 1 12111 1112356889
Q ss_pred HHHHHHHHHHHhCCCCccHhhHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHH
Q 008727 382 DELVEVYKVLSANDYFTDMESYNVMV----SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457 (556)
Q Consensus 382 ~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 457 (556)
+.+.++|+...+. ++....|+.-+= ..-.++.++..|.+++...+ |.-|-..+|...|..-.+.++++.+..+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999998873 222444554443 33456789999999999877 4578889999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
+++.++-+ +-|..+|.-....=...|+.+.|..+|+-+++.. +......|.+.|.-=...|.++.|..+++++++...
T Consensus 460 YEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 460 YEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 99999876 5678888888888888999999999999998763 222344566666666789999999999999987654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-10 Score=102.36 Aligned_cols=318 Identities=11% Similarity=0.039 Sum_probs=233.2
Q ss_pred HHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcC
Q 008727 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY--RIVAEEFKLMG 275 (556)
Q Consensus 198 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~ 275 (556)
.+-+.|....|+..|...... .|-...+|..|.... -+.+.+..+.. |...|..-+ -.+..++....
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~---~P~~W~AWleL~~li---t~~e~~~~l~~-----~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNR---YPWFWSAWLELSELI---TDIEILSILVV-----GLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhc---CCcchHHHHHHHHhh---chHHHHHHHHh-----cCcccchHHHHHHHHHHHHHHH
Confidence 345668888899888888755 444444554443322 22222222211 111121111 12344566667
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHhcCChhHHHHHH
Q 008727 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI--DDDVLNALIGSVSSIDPRSAIVFF 353 (556)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~a~~~~ 353 (556)
+.+++.+-.......|..-+...-+....+.....++++|..+|+++.+..+-. |..+|+.++-.-.. ...+.++
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~---~skLs~L 318 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND---KSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh---hHHHHHH
Confidence 888888888888888877666555555556777899999999999999885432 34455544432211 1112222
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008727 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433 (556)
Q Consensus 354 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 433 (556)
-+-...-.+--+.|..++.+-|+-.++.++|...|+...+.++. ....|+.|.+-|...++...|++-++..++....
T Consensus 319 A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~- 396 (559)
T KOG1155|consen 319 AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR- 396 (559)
T ss_pred HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-
Confidence 22221112233567778888899999999999999999998766 6779999999999999999999999999998655
Q ss_pred CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 008727 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (556)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 513 (556)
|-..|-.|.++|.-.+...=|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|++....|-. +...+..|.+
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~Lak 474 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAK 474 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHH
Confidence 88999999999999999999999999999874 668999999999999999999999999999987644 6678999999
Q ss_pred HHHccCCHHHHHHHHHHhhh
Q 008727 514 GLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 514 ~~~~~g~~~~a~~~~~~m~~ 533 (556)
.|-+.++.++|...+++.++
T Consensus 475 Lye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999998765
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-09 Score=95.82 Aligned_cols=285 Identities=16% Similarity=0.096 Sum_probs=207.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008727 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318 (556)
Q Consensus 239 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 318 (556)
.|++..|++...+-.+.+-.| ...|..-..+..+.|+.+.+-.++.+.-+..-.++..............|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577777777777766655332 3445555566667777777777777776654455555666666677777777777777
Q ss_pred HHHHHcCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 008727 319 GEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTL-------STLSNLSKNLCKRNKSDELVEVYKV 390 (556)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~ 390 (556)
.+.+.+.++. .+.+......+ ...|++.....++..+.+.|.-.+. .++..++.-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777766554 33444444444 3457778888888888777765443 3566666666666666666667776
Q ss_pred HHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH
Q 008727 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470 (556)
Q Consensus 391 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 470 (556)
.... .+.++..-.+++.-+.+.|+.++|.++..+..+++.+|+.. ..-.+.+.++.+.-++..+.-.+.- +-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 6543 22366777888899999999999999999999998877622 2235567778777777777666542 4455
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
..+.+|...|.+.+.+.+|.+.|+...+ ..|+..+|..+..++.+.|+.++|.++.++...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7888999999999999999999998874 589999999999999999999999999998753
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-10 Score=98.08 Aligned_cols=241 Identities=10% Similarity=0.066 Sum_probs=176.6
Q ss_pred CCHHHHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCC--HHhHH
Q 008727 47 LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK-ITLD--SSVYR 123 (556)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~ 123 (556)
++...+ ..++.+....+++|++.|-.+.+.. +-+..+.-++.+.|.+.|..+.|+.+.+.+.++. .+.+ .....
T Consensus 35 lsr~Yv-~GlNfLLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~ 111 (389)
T COG2956 35 LSRDYV-KGLNFLLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQ 111 (389)
T ss_pred ccHHHH-hHHHHHhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 444444 5567777777889999998886543 2344555567778888999999999999887753 1111 22445
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccCh----hhHHHHHHHH
Q 008727 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFST----IGFGVFIWKF 199 (556)
Q Consensus 124 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~ 199 (556)
.|.+-|...|-++.|+.+|..+.+.+. --..+...|+..|-...++++|+++-+++.+.+.++.. .-|.-+...+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 567778889999999999999876532 24567788899999999999999998888876644332 2344445555
Q ss_pred HhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008727 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279 (556)
Q Consensus 200 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 279 (556)
....+.+.|..++....+. .|....+-..+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++
T Consensus 191 ~~~~~~d~A~~~l~kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 191 LASSDVDRARELLKKALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred hhhhhHHHHHHHHHHHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 5668888889888888866 5555666667788888899999999999998888544445667788888999999999
Q ss_pred HHHHHHHHHhcCCCC
Q 008727 280 REVVLKKKRKLGVAP 294 (556)
Q Consensus 280 a~~~~~~~~~~~~~~ 294 (556)
....+..+.+....+
T Consensus 268 ~~~fL~~~~~~~~g~ 282 (389)
T COG2956 268 GLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHHHHHHHccCCc
Confidence 988888887764433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-11 Score=112.86 Aligned_cols=284 Identities=11% Similarity=-0.006 Sum_probs=160.6
Q ss_pred ChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC--CccChhhHHHHHHHHHhhCcHHHHHHH
Q 008727 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG--VEFSTIGFGVFIWKFCENAKLGQVLSM 211 (556)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~ 211 (556)
+..+|...|+.+...-.. +..+...+..+|...+++++|.++|+.+.+.. ..-+...|++.++.+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 345666666664443222 33455566666666666666666666665532 111445566555443221 11111
Q ss_pred H-HHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 212 L-DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 212 ~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
+ +.+.. ..+..+.+|-++..+|.-+++.+.|++.|++..+. .| ...+|+.+-.-+.....+|.|...|+..+.
T Consensus 409 Laq~Li~---~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 409 LAQDLID---TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHh---hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 1 22221 24445566666666666666666666666666554 33 455666666666666666666666665433
Q ss_pred cCCCCChhhHHHHH---HHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 008727 290 LGVAPRTNDYREFI---LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLS 366 (556)
Q Consensus 290 ~~~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 366 (556)
.|+..|+++- ..|.+.++++.|.-.|+.+.+-++................++.++|+.++++....+.+- +.
T Consensus 484 ----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn-~l 558 (638)
T KOG1126|consen 484 ----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN-PL 558 (638)
T ss_pred ----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC-ch
Confidence 3444555433 256666666666666666666655544444444444445566667777776666554332 22
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 433 (556)
.--.....+...+++++|...++++++.-+. +..++..+...|-+.|+.+.|+.-|.-+.+...++
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 2222334455667777777777777765433 55567777777777777777777777766654443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.3e-11 Score=115.41 Aligned_cols=274 Identities=13% Similarity=0.096 Sum_probs=163.3
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008727 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184 (556)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 184 (556)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.....+.+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35667888899999999999999999999999999 9999988777778889999999999999988775
Q ss_pred CccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHh-hCCCCCCHHH
Q 008727 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR-IRECKPDFIA 263 (556)
Q Consensus 185 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~-~~~~~p~~~~ 263 (556)
.|...||..|..+|...||+.. |+...+. ...++..+...|.-..-..++..+. ..+.-||..+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veqd----------Le~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQD----------LESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHHH----------HHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH
Confidence 6788999999999999999876 3333221 0113444555555555555554432 2233445433
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 008727 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343 (556)
Q Consensus 264 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (556)
.+......|-++.+++++..+-.....- ++...++-+..... .
T Consensus 145 ---~illlv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~nt--p----------------------------- 187 (1088)
T KOG4318|consen 145 ---AILLLVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNT--P----------------------------- 187 (1088)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCc--h-----------------------------
Confidence 2223334455555555554332211000 00001211111111 1
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHH
Q 008727 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423 (556)
Q Consensus 344 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 423 (556)
+++-........+ .|++.+|..++.+-...|+.+.|..++.+|.+.|++.+..-|..++-+ .++...+..++
T Consensus 188 --vekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vl 259 (1088)
T KOG4318|consen 188 --VEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVL 259 (1088)
T ss_pred --HHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHH
Confidence 1111111111111 356666666666666666666666666666666666555555555443 55556666666
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhhcC
Q 008727 424 QEMKRKGLDPDVSFYNSLMEACCRED 449 (556)
Q Consensus 424 ~~m~~~~~~p~~~~~~~ll~~~~~~~ 449 (556)
.-|.+.|+.|+..|+..-+-.+..+|
T Consensus 260 rgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 260 RGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHHHhcCCCCcchhHHHHHhhhcch
Confidence 66666666666666655555555433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-09 Score=96.08 Aligned_cols=416 Identities=11% Similarity=0.012 Sum_probs=215.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCC-HHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc
Q 008727 89 SILKSLSLSRQINAIDSVLKQVKVNKITLD-SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD 167 (556)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 167 (556)
....-|-+.|++++|++.+...++.. |+ +..|.....+|...|+|+++.+--.+..+..++ -+.++..-.+++-..
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHhh
Confidence 34455677889999999999888864 66 777888888888899999888877777665332 334666667777788
Q ss_pred CCHhHHHHHHHHHHh-CCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHH
Q 008727 168 GYIDNALKMFDEMSH-RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246 (556)
Q Consensus 168 g~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 246 (556)
|++++|+.=..-.-- .|.. +. ....++....+.--...+.+.+. ..+ ....|+.. .|..|...-..+
T Consensus 197 g~~~eal~D~tv~ci~~~F~-n~-s~~~~~eR~Lkk~a~~ka~e~~k--~nr-~p~lPS~~----fi~syf~sF~~~--- 264 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQ-NA-SIEPMAERVLKKQAMKKAKEKLK--ENR-PPVLPSAT----FIASYFGSFHAD--- 264 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcc-cc-hhHHHHHHHHHHHHHHHHHHhhc--ccC-CCCCCcHH----HHHHHHhhcccc---
Confidence 888877543222111 1111 11 11111111111111111111111 011 11112111 122221110000
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHH----h-cCCHHHHHHHHHHHHhc-CCCCChh---------hHHHHHH--HHHhc
Q 008727 247 KVLDELRIRECKPDFIAYRIVAEEFK----L-MGSVFEREVVLKKKRKL-GVAPRTN---------DYREFIL--GLIVE 309 (556)
Q Consensus 247 ~~~~~m~~~~~~p~~~~~~~ll~~~~----~-~~~~~~a~~~~~~~~~~-~~~~~~~---------~~~~ll~--~~~~~ 309 (556)
.......+.......+..++. . ...+.++.+.+.+-... -..++.. .-..++. -+.-.
T Consensus 265 -----~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 265 -----PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred -----ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 000000000011111111110 0 01122222222211100 0000000 0001111 22345
Q ss_pred CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 008727 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388 (556)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 388 (556)
|+.-.+.+-|+.++...+.+... |--+-.. ....+.++....|.+..+.+.. ++.+|-.-...+.-.+++++|..=|
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHH
Confidence 67777777777777665443332 2222222 2345667777777777665432 3445555555556667778888877
Q ss_pred HHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC
Q 008727 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468 (556)
Q Consensus 389 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 468 (556)
++..+..+. +...|-.+--+..+.+++++++..|++.+++- .-.+..|+.....+...++++.|.+.|+..++. .|
T Consensus 418 ~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~ 493 (606)
T KOG0547|consen 418 QKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EP 493 (606)
T ss_pred HHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--cc
Confidence 777776543 44455555555567778888888888877762 225667777788888888888888888877764 22
Q ss_pred C-------H--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 469 N-------L--KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 469 ~-------~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
+ + .+--.++..- -.+++..|.+++++.++...+ ....|..|...-.+.|+.++|+++|++..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 1 1112222221 237777888888888765433 34567777777778888888888888753
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.2e-08 Score=91.59 Aligned_cols=433 Identities=13% Similarity=0.066 Sum_probs=208.8
Q ss_pred HHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHH
Q 008727 51 LVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130 (556)
Q Consensus 51 ~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 130 (556)
++.+.++.+........+++.+.+.++.+-+++ +.....-.+...|+.++|.+....-...+ .-+...|..+.-.+.
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge--slAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGE--SLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch--hHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence 345555555555555566666655553332222 32222223344566677766666655543 345556666666666
Q ss_pred cCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHH
Q 008727 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210 (556)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 210 (556)
..+++++|++.|......+.. |..+|.-|--.-++.|+++..........+.. +-....|..+..++.-.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777666544 66666666666666666666666665555542 1233455556666666677777777
Q ss_pred HHHHHHhccCCCCCchhhHHH------HHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHH
Q 008727 211 MLDEVRKRENSMINGSVIAVL------IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY-RIVAEEFKLMGSVFEREVV 283 (556)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~------li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~ 283 (556)
++++..+... ..++...+.. -.....+.|..++|.+.+..-... ..|...+ .+-...+.+.+++++|..+
T Consensus 165 il~ef~~t~~-~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 165 ILEEFEKTQN-TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 7777766522 2222222211 123344566666666665544332 1122222 2233445566777777777
Q ss_pred HHHHHhcCCCCChhhHHHHHH-HHHhcCCHHHHH-HHHHHHHcCCCCCCHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcC
Q 008727 284 LKKKRKLGVAPRTNDYREFIL-GLIVERRICEAK-ELGEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKG 360 (556)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~ 360 (556)
+..++.. .||...|...+. ++.+-.+.-++. .+|....+. ++.....-..-+..+...+ .+..-+++..+.+.|
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 7776664 455554444333 332222222222 333333322 1111111111111111111 222333445555555
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----HhCC----------CCccHhhH--HHHHHHHHhcCCHHHHHHHHH
Q 008727 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVL----SAND----------YFTDMESY--NVMVSFLCTSGRLREAYGVIQ 424 (556)
Q Consensus 361 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~----------~~~~~~~~--~~li~~~~~~~~~~~a~~~~~ 424 (556)
+++-...+.++ |-.....+-..++...+ ...| -+|....| --+++.+-..|+++.|..+++
T Consensus 319 ~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 54322222222 22111111111111111 1110 02333333 334455556666666666666
Q ss_pred HHHHCCCCCCH-hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 008727 425 EMKRKGLDPDV-SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500 (556)
Q Consensus 425 ~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 500 (556)
....+ .|+. ..|..=.+.+...|++++|..++++..+.+ .+|...=.--..-..+.++.++|.++.....+.|
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 66554 3332 233344455666666666666666666554 3444333334444455666666666666655554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-07 Score=87.91 Aligned_cols=432 Identities=15% Similarity=0.086 Sum_probs=281.9
Q ss_pred CCHHHHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHH
Q 008727 47 LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126 (556)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 126 (556)
...++--..|.....+..+.|....+-..+ +-..+.+.|+.+.-.+...+++++|++-|......+ +-|...+.-+-
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDls 116 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLS 116 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 344444456666667778889988887643 334577889888777888899999999999999987 66788888887
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CccChhhHHHHHH------HH
Q 008727 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG-VEFSTIGFGVFIW------KF 199 (556)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~------~~ 199 (556)
-.-++.|+++..........+..+. ....|..+..++.-.|+...|..++++..+.. -.|+...|..... ..
T Consensus 117 lLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~ 195 (700)
T KOG1156|consen 117 LLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQIL 195 (700)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 7788899999988888888765332 55689999999999999999999999988754 3456655544332 34
Q ss_pred HhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHH
Q 008727 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK-LMGSVF 278 (556)
Q Consensus 200 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~ 278 (556)
.+.|..++|.+-+...... ..+....-..-...+.+.+++++|..++..+..+ .||...|...+..+. +.-+.-
T Consensus 196 ~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~ 270 (700)
T KOG1156|consen 196 IEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDML 270 (700)
T ss_pred HHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhH
Confidence 4568888888777666543 2332233345667788999999999999999988 577777766555443 333333
Q ss_pred HHH-HHHHHHHhcC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCC-hh----HH
Q 008727 279 ERE-VVLKKKRKLG---VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID-PR----SA 349 (556)
Q Consensus 279 ~a~-~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~----~a 349 (556)
++. .+|....+.- -.|-....+ ......-.+...+++....+.|+++ ++..+...+..-. .. -+
T Consensus 271 ~~lk~ly~~ls~~y~r~e~p~Rlpls----vl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lv 343 (700)
T KOG1156|consen 271 EALKALYAILSEKYPRHECPRRLPLS----VLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLV 343 (700)
T ss_pred HHHHHHHHHHhhcCcccccchhccHH----HhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHH
Confidence 333 5555544431 111111111 1111122233444555666666543 2333333332211 00 01
Q ss_pred HHHHHHHHHcC----------CCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHH
Q 008727 350 IVFFNFMIEKG----------RVPTLST--LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417 (556)
Q Consensus 350 ~~~~~~~~~~~----------~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 417 (556)
..+...+...| -+|+... +-.++..+-+.|+++.|...++....+-+. -+..|..=.+.+...|+++
T Consensus 344 t~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~ 422 (700)
T KOG1156|consen 344 TSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLD 422 (700)
T ss_pred HHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHHHHHHHHHHhcCChH
Confidence 11111111111 1445443 345677888999999999999999886322 2335555568888999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH--------HHHHH--HHHHHccCCHH
Q 008727 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK--------TYNIL--ISKFSEVGEIE 487 (556)
Q Consensus 418 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l--i~~~~~~g~~~ 487 (556)
+|..++++..+... ||...=..-.....+.++.++|.++.....+.|. +.. +|-.+ ..+|.+.|++.
T Consensus 423 eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g 499 (700)
T KOG1156|consen 423 EAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLG 499 (700)
T ss_pred HHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHH
Confidence 99999999988753 4665555666777889999999999999988774 222 22222 34678888888
Q ss_pred HHHHHHHHHHH
Q 008727 488 GALRLFHNMLE 498 (556)
Q Consensus 488 ~A~~~~~~m~~ 498 (556)
.|++=|.....
T Consensus 500 ~ALKkfh~i~k 510 (700)
T KOG1156|consen 500 LALKKFHEIEK 510 (700)
T ss_pred HHHHHHhhHHH
Confidence 88776666543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-09 Score=96.92 Aligned_cols=195 Identities=14% Similarity=0.128 Sum_probs=153.6
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHH
Q 008727 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (556)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 420 (556)
+..|+.-.|..-|+..+.....++.- |-.+..+|....+.++.+..|+...+.++. ++.+|..-.+.+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 44688999999999998887665542 555666799999999999999999998776 7778888888888889999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-
Q 008727 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK- 499 (556)
Q Consensus 421 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 499 (556)
.-|++.+..... +...|.-+.-+.-+.+.+++++..|++.++. ++.-+..|+.....+..++++++|.+.|+..++.
T Consensus 415 aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999999887433 5566766666777889999999999999876 5666889999999999999999999999999864
Q ss_pred ----CCCCCHhhH--HHHHHHHHccCCHHHHHHHHHHhhhCCCcccH
Q 008727 500 ----GVAPDATTY--TSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540 (556)
Q Consensus 500 ----g~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 540 (556)
++..+...+ ..++. +.-.+++.+|.+++++.++.++.-+.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~ 538 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQ 538 (606)
T ss_pred cccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHH
Confidence 111222222 22222 22348999999999999998876443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-08 Score=88.06 Aligned_cols=167 Identities=10% Similarity=-0.043 Sum_probs=103.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 008727 90 ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY 169 (556)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 169 (556)
+...+-+.|++++|...+..+.+.. .++...+..|...+.-.|.+.+|..+-.+..+ ++-.-..|+..--+.++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCc
Confidence 3455668899999999998877754 56677777777777777888888887766533 34444555666667777
Q ss_pred HhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHH
Q 008727 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVL 249 (556)
Q Consensus 170 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 249 (556)
-++-..+-+.+...- .--.+|.......-.+.+|++++.++... .+.-...-..+.-+|.+..-++-+.+++
T Consensus 137 Ek~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEYIALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred HHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhc---ChhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence 777666665554321 11222333444455778888888888765 2221112223555777888888888887
Q ss_pred HHHhhCCCCCCH-HHHHHHHHHHH
Q 008727 250 DELRIRECKPDF-IAYRIVAEEFK 272 (556)
Q Consensus 250 ~~m~~~~~~p~~-~~~~~ll~~~~ 272 (556)
+--.+. .||+ ...|.......
T Consensus 209 ~vYL~q--~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 209 KVYLRQ--FPDSTIAKNLKACNLF 230 (557)
T ss_pred HHHHHh--CCCcHHHHHHHHHHHh
Confidence 776654 3443 34444443333
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.2e-10 Score=99.29 Aligned_cols=200 Identities=9% Similarity=-0.006 Sum_probs=134.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++....... +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 34566677777888888888888888877654 445667777778888888888888888887766433 5567777777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEF-STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 241 (556)
.+...|++++|.+.|++.......+ ....+..+...+...|++++|...++..... .|.+...+..+...+...|+
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCC
Confidence 8888888888888888876642211 2334555566666777777777777777655 33444556666677777777
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288 (556)
Q Consensus 242 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 288 (556)
+++|.+.+++.... ...+...+..+...+...|+.++|..+.+.+.
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777777776654 22344555555566666666666666655544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-08 Score=92.96 Aligned_cols=444 Identities=12% Similarity=0.026 Sum_probs=209.5
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHH----HHhCC--
Q 008727 76 QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE----VKFNC-- 149 (556)
Q Consensus 76 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----~~~~~-- 149 (556)
+-.+...|+..-..+.+++.-.|++..|..++..-.-. ..|..+.......+.+..++++|..++.. .....
T Consensus 41 kV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy 118 (611)
T KOG1173|consen 41 KVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYY 118 (611)
T ss_pred HHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhc
Confidence 34444556666667888888888888888777654322 35777778888888999999999998882 21100
Q ss_pred -------CCCChH-----------hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHH
Q 008727 150 -------EDIGPE-----------ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211 (556)
Q Consensus 150 -------~~~~~~-----------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 211 (556)
..+|.. .+-.-...|....++++|...|.+....++. .-..+..++....-. ..+-..+
T Consensus 119 ~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt--~~Ee~~l 195 (611)
T KOG1173|consen 119 EKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLT--AQEEFEL 195 (611)
T ss_pred chhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcc--hhHHHHH
Confidence 000100 0111112344445677777777776654322 112222222211100 0011111
Q ss_pred HHHHHhccCCCCCchhhHHHHHHHH-hccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 212 LDEVRKRENSMINGSVIAVLIIHGF-CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
|+.+.-. .....+......+.... ++..+ ++....-.+-.-.+..-+......-..-+...+++.+..++.+...+.
T Consensus 196 l~~l~~a-~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~ 273 (611)
T KOG1173|consen 196 LESLDLA-MLTKEDVERLEILYELKLCKNRN-EESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK 273 (611)
T ss_pred HhcccHH-hhhhhHHHHHHHHHHhhhhhhcc-ccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh
Confidence 1110000 00000000000000000 00000 000000000000112223333334444455566666666666666554
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 008727 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370 (556)
Q Consensus 291 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 370 (556)
. .+....+..-|.++...|+..+-..+-..+.+.-+......+...+-.+.-+...+|.+.|.+...-+.. -...|-.
T Consensus 274 d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~ 351 (611)
T KOG1173|consen 274 D-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLA 351 (611)
T ss_pred C-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHH
Confidence 1 2233344444556666666655555555555554443333344444444556666666666655432211 1234445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcC
Q 008727 371 LSKNLCKRNKSDELVEVYKVLSANDYFT-DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449 (556)
Q Consensus 371 ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 449 (556)
+...|+-.|..|+|+..+....+.-..- -+..| +.--|.+.++.+.|.++|.+.....+ -|+..++-+.-.....+
T Consensus 352 fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~ 428 (611)
T KOG1173|consen 352 FGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTNNLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYE 428 (611)
T ss_pred HhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhccHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHh
Confidence 5555666666666666665554421110 11112 22234455666666666665554422 24445555554445556
Q ss_pred ChhhHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHH
Q 008727 450 LLRPAKKLWDQMFAS----G--CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523 (556)
Q Consensus 450 ~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 523 (556)
.+.+|..+|+..... + ...-..+++.|..+|.+.+..++|+..+++.+... +-|..++.++.-.|...|+++.
T Consensus 429 ~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 429 EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDK 507 (611)
T ss_pred hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHH
Confidence 666666666655421 0 00123345556666666666666666666665542 2255566666666666666666
Q ss_pred HHHHHHHhh
Q 008727 524 AFEVFNKSV 532 (556)
Q Consensus 524 a~~~~~~m~ 532 (556)
|++.|.+.+
T Consensus 508 Aid~fhKaL 516 (611)
T KOG1173|consen 508 AIDHFHKAL 516 (611)
T ss_pred HHHHHHHHH
Confidence 666666553
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-12 Score=82.72 Aligned_cols=49 Identities=45% Similarity=0.875 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 008727 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (556)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 516 (556)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.3e-12 Score=80.94 Aligned_cols=49 Identities=37% Similarity=0.785 Sum_probs=25.4
Q ss_pred ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 398 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4445555555555555555555555555555555555555555555544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-09 Score=105.96 Aligned_cols=250 Identities=10% Similarity=-0.033 Sum_probs=142.3
Q ss_pred ChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh---------cCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCc
Q 008727 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS---------DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204 (556)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 204 (556)
++++|...|++..+..+. +...|..+..++.. .+++++|...+++..+.+. -+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccC
Confidence 456777777777665433 44555555544432 2346777777777776542 244556666666677777
Q ss_pred HHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008727 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284 (556)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 284 (556)
+++|...|++..+. .|++...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLL---SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 77777777777766 5666666666777777777777777777777665322 1122233344455567777777777
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcC-CC
Q 008727 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKG-RV 362 (556)
Q Consensus 285 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~-~~ 362 (556)
++..+....-+...+..+..++...|+.++|...+..+....+. +....+.+...+. .| +.|...++.+.+.. ..
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 77665432112333455556666777777777777766444221 2222333333333 23 46666666554321 11
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 008727 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395 (556)
Q Consensus 363 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 395 (556)
+....+.. ..+.-.|+.+.+... +++.+.+
T Consensus 507 ~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLP--LVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHH--HHHHHHhhhHHHHHH-HHhhccc
Confidence 22222222 234555666666655 6666653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-09 Score=96.27 Aligned_cols=202 Identities=10% Similarity=-0.019 Sum_probs=150.0
Q ss_pred CCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHH
Q 008727 117 LDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196 (556)
Q Consensus 117 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 196 (556)
.....+..+...+...|++++|.+.+++..+..+. +...+..+...+...|++++|.+.+++..+.+. .+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 34567778888888999999999999988776432 567888888899999999999999998887643 2445666777
Q ss_pred HHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 008727 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276 (556)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 276 (556)
..+...|++++|.+.++..... ...+.....+..+...+...|++++|.+.|++...... .+...+..+...+...|+
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIED-PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCC
Confidence 7888889999999999888765 32333445566677888888899999888888876532 245667777788888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323 (556)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (556)
+++|...+++..+. ...+...+..+...+...|+.+.|..+.+.+.
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88888888887765 22344455555666667777777777665544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-06 Score=83.20 Aligned_cols=439 Identities=12% Similarity=0.096 Sum_probs=241.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCC------CCCCHHhHHHHHHHHHcCCChH---HHHHHHHHHHhCCCCCC
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNK------ITLDSSVYRFIIPSLIQGKNTQ---KAFSVFNEVKFNCEDIG 153 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~ 153 (556)
++..-+-.|..+...+++++|-+.+..+.... .+.+-..|.-+.+...+.-+.- ....++..+...-.+-=
T Consensus 168 ~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~ 247 (835)
T KOG2047|consen 168 APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQL 247 (835)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHH
Confidence 34445666778888888888888887765431 2445566666666665543322 33444444443322112
Q ss_pred hHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhC----------------------cHHHHHHH
Q 008727 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA----------------------KLGQVLSM 211 (556)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~a~~~ 211 (556)
-..|++|.+.|.+.|.++.|.++|++....- .+..-|..+.++|+.-. +++-....
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 2489999999999999999999999977652 24444555555555321 22233333
Q ss_pred HHHHHhccCC---------CCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC------HHHHHHHHHHHHhcCC
Q 008727 212 LDEVRKRENS---------MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD------FIAYRIVAEEFKLMGS 276 (556)
Q Consensus 212 ~~~~~~~~~~---------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~~~ 276 (556)
|+.+..+... .|.+...|.. +.-...|+..+-...|.+..+. +.|. ...|..+.+.|-..|+
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCc
Confidence 4444332111 1222222221 1122345666667777776543 2221 2357777788888899
Q ss_pred HHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCC-----------CCCHHH------HHH
Q 008727 277 VFEREVVLKKKRKLGVAPR---TNDYREFILGLIVERRICEAKELGEVIVSGKF-----------TIDDDV------LNA 336 (556)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~------~~~ 336 (556)
++.|..+|++..+...+-- ..+|......-.+..+++.|.++++....... ++.... |..
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 9999999988776543321 22344444455566777888887776653211 111222 333
Q ss_pred HHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHh-hHHHHHHHHHh--
Q 008727 337 LIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME-SYNVMVSFLCT-- 412 (556)
Q Consensus 337 l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~-- 412 (556)
.+.... -|-++....+++.+.+..+.. +.........+-...-++++.++|++-...-..|++. .|+..+.-+.+
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 333322 356777777777777766542 2222222223344555777777777655543334443 56666555443
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH--HhhcCChhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHH
Q 008727 413 -SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA--CCREDLLRPAKKLWDQMFASGCSGN--LKTYNILISKFSEVGEIE 487 (556)
Q Consensus 413 -~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~ 487 (556)
....+.|..+|++..+ |+.|...-+..|+-+ =-+.|-...|++++++.... +.+. ...||..|+--+..=-+.
T Consensus 562 gg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~ 639 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVP 639 (835)
T ss_pred cCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCc
Confidence 2367888888888888 565554322222222 12346677778888776543 2332 345666665444333334
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHH---HHccCCHHHHHHHHHHh
Q 008727 488 GALRLFHNMLEKGVAPDATTYTSLLEG---LCQETNLQAAFEVFNKS 531 (556)
Q Consensus 488 ~A~~~~~~m~~~g~~p~~~~~~~l~~~---~~~~g~~~~a~~~~~~m 531 (556)
....+|++.++. -||...-...++- =++.|..+.|..++.-.
T Consensus 640 ~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 640 RTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred ccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 445556655544 3444433332221 14556666666666544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-08 Score=98.21 Aligned_cols=158 Identities=17% Similarity=0.169 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
++..+...|...|++++|.++++...++.+. .+..|..-.+.+-+.|++.+|.+.++........ |...-+.....+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 3344556677778888888888777776543 4556777777777778888888877777776554 6666667777777
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHH------HH--HHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHH
Q 008727 447 REDLLRPAKKLWDQMFASGCSGNLK------TY--NILISKFSEVGEIEGALRLFHNMLEK--GVAPDATTYTSLLEGLC 516 (556)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~ 516 (556)
+.|++++|.+++....+.+..|-.. .| .....+|.+.|++..|++-|....+. .+.-|..-|... |.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Y---c~ 350 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSY---CL 350 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHH---HH
Confidence 7788888887777777665433221 11 33455677777777777777776654 344455555532 55
Q ss_pred ccCCHHHHHHHHH
Q 008727 517 QETNLQAAFEVFN 529 (556)
Q Consensus 517 ~~g~~~~a~~~~~ 529 (556)
|.|-+..=+++++
T Consensus 351 RK~t~r~Y~~~L~ 363 (517)
T PF12569_consen 351 RKMTLRAYVDMLR 363 (517)
T ss_pred hhccHHHHHHHHH
Confidence 6665444444433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.1e-07 Score=83.41 Aligned_cols=50 Identities=14% Similarity=0.103 Sum_probs=25.2
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHH
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 141 (556)
++.+...+++++|.+....+...+ +-+...+..-+-++++.+.+++|+.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ 68 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKL 68 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHH
Confidence 344444555555555555555543 34444455555555555555555533
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.4e-09 Score=105.28 Aligned_cols=250 Identities=12% Similarity=0.036 Sum_probs=135.3
Q ss_pred CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHh---------ccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008727 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC---------KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273 (556)
Q Consensus 203 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 273 (556)
+++++|...|++..+. .|.....|..+..++. ..+++++|...+++..+.... +...+..+...+..
T Consensus 275 ~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 4567888888888766 5665666655554433 234477888888877766322 55666666667777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHH
Q 008727 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFF 353 (556)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~ 353 (556)
.|++++|...|++..+.... +...+..+...+...|++++|...++...+.++......
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~-------------------- 409 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG-------------------- 409 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH--------------------
Confidence 78888888888777765321 233455556666777777777777766665543321111
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008727 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433 (556)
Q Consensus 354 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 433 (556)
..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...+.++... .|
T Consensus 410 ---------------~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~ 472 (553)
T PRK12370 410 ---------------ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EI 472 (553)
T ss_pred ---------------HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cc
Confidence 1122223345556666666655544322113334555555566666666666666665443 22
Q ss_pred C-HhHHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 434 D-VSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 434 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+ ....+.+...|...| ++|...++.+.+. ...+....+ +-..|+-.|+.+.+... +++.+.
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2 223333444445444 3555555554432 111211112 23334445555555444 555544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-08 Score=91.12 Aligned_cols=284 Identities=14% Similarity=0.043 Sum_probs=169.7
Q ss_pred hhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008727 189 TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268 (556)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 268 (556)
......-.+.+...+++.+..++++.+.+. .|.....+..-|..+.+.|+..+-..+=..+.+.- +-...+|-++.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~---dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEK---DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhh---CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 333444444455555555555555555544 23333333333445555555555555545554441 11334555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhH
Q 008727 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS 348 (556)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 348 (556)
--|...|+.++|.+.|.+........ ...|....++|.-.|.-++|...+..+-+.-+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~f-gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-------------------- 378 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTF-GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-------------------- 378 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccc-cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC--------------------
Confidence 55555566666666665543321111 114445555666666666665554433221000
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008727 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 428 (556)
...| ..| +.--|.+.++...|.++|.+.....+. |+.+.+-+.......+.+.+|..+|+....
T Consensus 379 -----------~hlP--~LY--lgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 379 -----------CHLP--SLY--LGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALE 442 (611)
T ss_pred -----------Ccch--HHH--HHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence 0111 111 122366778888888888877765544 677777777777777888888888887652
Q ss_pred C--CC---C-CCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 008727 429 K--GL---D-PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502 (556)
Q Consensus 429 ~--~~---~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 502 (556)
. .+ . --..+++.|.++|.+.+.+++|+..+++..... +.|..++.++.-.|...|+++.|.+.|.+.+ .+.
T Consensus 443 ~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~ 519 (611)
T KOG1173|consen 443 VIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALK 519 (611)
T ss_pred HhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcC
Confidence 1 01 1 134567888888888888888888888888764 6778888888888888888888888888887 667
Q ss_pred CCHhhHHHHHHHHH
Q 008727 503 PDATTYTSLLEGLC 516 (556)
Q Consensus 503 p~~~~~~~l~~~~~ 516 (556)
||..+-..++..+.
T Consensus 520 p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 520 PDNIFISELLKLAI 533 (611)
T ss_pred CccHHHHHHHHHHH
Confidence 88776666666443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-07 Score=80.90 Aligned_cols=425 Identities=13% Similarity=0.094 Sum_probs=264.9
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 170 (556)
+.-+...+++..|+.+++.-...+-.....+-..+...+.+.|++++|...+..+... -.++...+-.|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 5566678889999998887665543333344555666778999999999999998774 456888888888888888999
Q ss_pred hHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHH
Q 008727 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250 (556)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 250 (556)
.+|..+-....+ +...-..++...-+.++-++...+.+.+... ..-..+|.......-.+.+|++++.
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-------~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-------LEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-------HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999888765543 2233344555556678877777776666543 1222335555555567899999999
Q ss_pred HHhhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHh--cCCHHHH--HH-------
Q 008727 251 ELRIRECKPDFIAYRIVAE-EFKLMGSVFEREVVLKKKRKLGVAPRTN-DYREFILGLIV--ERRICEA--KE------- 317 (556)
Q Consensus 251 ~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~--~~~~~~a--~~------- 317 (556)
+.... .|+-...|.-+. +|.+..-++-+.++++-.++. -||+. ..+.......+ .|+..+. .+
T Consensus 176 rvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~ 251 (557)
T KOG3785|consen 176 RVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ 251 (557)
T ss_pred HHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc
Confidence 99876 455666665444 466777778888887766654 23322 22211111111 1222111 11
Q ss_pred ---HHHHHHcCCC------C------------CCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-
Q 008727 318 ---LGEVIVSGKF------T------------IDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL- 375 (556)
Q Consensus 318 ---~~~~~~~~~~------~------------~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~- 375 (556)
..+.+.+.+. + ....-.|.++-.+.+++..+|..+.+++.- ..|-......+..+-
T Consensus 252 ~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 252 EYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAAL 329 (557)
T ss_pred cchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHh
Confidence 1111222111 0 112235555566677888888888776532 223333333333221
Q ss_pred ----HhcCChHHHHHHHHHHHhCCCCccHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCC
Q 008727 376 ----CKRNKSDELVEVYKVLSANDYFTDME-SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450 (556)
Q Consensus 376 ----~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 450 (556)
.....+.-|.+.|+..-+.+..-|.. ---++...+.-..++++++-++..+..--..-|...| .+..+++..|+
T Consensus 330 GQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgn 408 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGN 408 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcC
Confidence 12223455667777666655443333 3445556666667888888888887765444344444 47788999999
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHccCCHHHHHHHH
Q 008727 451 LRPAKKLWDQMFASGCSGNLKTY-NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT-SLLEGLCQETNLQAAFEVF 528 (556)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~a~~~~ 528 (556)
+.+|+++|-++..-.++ |..+| ..|..+|.+.+.++-|++++-++- -..+..+.- .+..-|.+.+.+=-|.+.|
T Consensus 409 y~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 409 YVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred hHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888765543 44454 556688899999999988776653 222333333 3345788899888888888
Q ss_pred HHhhhCCCccc
Q 008727 529 NKSVNHDVMLA 539 (556)
Q Consensus 529 ~~m~~~~~~~~ 539 (556)
+.+...++.|.
T Consensus 485 d~lE~lDP~pE 495 (557)
T KOG3785|consen 485 DELEILDPTPE 495 (557)
T ss_pred hHHHccCCCcc
Confidence 87777776553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-07 Score=89.08 Aligned_cols=436 Identities=14% Similarity=0.070 Sum_probs=226.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-ChHhHH
Q 008727 80 FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI-GPEICN 158 (556)
Q Consensus 80 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 158 (556)
+.-++..|..+.-++.+.|++..+.+.|++....- --....|..+-..|...|.-..|+.+++.-......| ++..+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 33466666666666777777777777777665532 2345566666666777777777777776654433222 333333
Q ss_pred HHHHHHHhc-CCHhHHHHHHHHHHh--CCC--ccChhhHHHHHHHHHhh-----------CcHHHHHHHHHHHHhccCCC
Q 008727 159 SLLAVLASD-GYIDNALKMFDEMSH--RGV--EFSTIGFGVFIWKFCEN-----------AKLGQVLSMLDEVRKRENSM 222 (556)
Q Consensus 159 ~li~~~~~~-g~~~~a~~~~~~m~~--~~~--~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~~ 222 (556)
..-..|.+. +..+++++.-.+... .+. ......|..+.-+|... ....++.+.+++..+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~---d 474 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF---D 474 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc---C
Confidence 333334332 555555555444443 110 01112222222222211 2234556666666655 2
Q ss_pred CCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCChhhHHH
Q 008727 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL-GVAPRTNDYRE 301 (556)
Q Consensus 223 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ 301 (556)
+.|+.+-..+.--|+..++++.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+..... |....... .
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~--~ 552 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD--G 552 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch--h
Confidence 22222222244456666777777777777766655556667777766677777777777776655443 21110000 0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcC
Q 008727 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIE--KGRVPTLSTLSNLSKNLCKRN 379 (556)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~g 379 (556)
-++.-..-++.+++......+..- |...-..-..++-....+....+.- ....-...++..+..-....+
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~--------we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLAL--------WEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHH--------HHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 011111234444444332222110 0000000000111111111111110 011111223322222221111
Q ss_pred ChHHHHHHHHHHHhCCCCc--c------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCCh
Q 008727 380 KSDELVEVYKVLSANDYFT--D------MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451 (556)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~--~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 451 (556)
........ +......| + ...|......+.+.+..++|...+.+...... -....|......+...|..
T Consensus 625 ~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 625 KSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred hhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhh
Confidence 10000000 22111111 1 22566666777778888888877777665432 2456667777777788888
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH--HHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 008727 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR--LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529 (556)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 529 (556)
++|.+.|......+ +-++.+.+++..++.+.|+..-|.. ++..+.+.+.. +...|..+...+-+.|+.++|.+.|.
T Consensus 701 ~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 701 EEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHH
Confidence 88888888887753 3345677788888888888777777 88888876543 67788888888888888888888888
Q ss_pred HhhhCC
Q 008727 530 KSVNHD 535 (556)
Q Consensus 530 ~m~~~~ 535 (556)
...+..
T Consensus 779 aa~qLe 784 (799)
T KOG4162|consen 779 AALQLE 784 (799)
T ss_pred HHHhhc
Confidence 776543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-06 Score=81.86 Aligned_cols=163 Identities=11% Similarity=0.079 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhC-CCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVN-KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 163 (556)
..|-..++.+.+++++......|+..+.. .+......|...+......+-.+.+.++++.-.+. ++..-+--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 45656666667777777777777766553 23334456666666666677777777777776654 44556666777
Q ss_pred HHhcCCHhHHHHHHHHHHhCC------CccChhhHHHHHHHHHhhCcHH---HHHHHHHHHHhccCCCCC-chhhHHHHH
Q 008727 164 LASDGYIDNALKMFDEMSHRG------VEFSTIGFGVFIWKFCENAKLG---QVLSMLDEVRKRENSMIN-GSVIAVLII 233 (556)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~-~~~~~~~li 233 (556)
+++.++.++|-+.+....... .+.+...|..+-+...+..+.- ....+++.+..+ .++ -...|..|.
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSLA 255 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHHH
Confidence 777777777777776654322 1223334444443333332221 122233333222 111 123556677
Q ss_pred HHHhccCCHHHHHHHHHHHhh
Q 008727 234 HGFCKGKRVEEAFKVLDELRI 254 (556)
Q Consensus 234 ~~~~~~~~~~~A~~~~~~m~~ 254 (556)
+.|.+.|.++.|.++|++...
T Consensus 256 dYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHH
Confidence 777777777777777666544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.8e-08 Score=92.54 Aligned_cols=425 Identities=12% Similarity=0.053 Sum_probs=254.4
Q ss_pred HhcCChhHHHHH----HHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH
Q 008727 95 SLSRQINAIDSV----LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170 (556)
Q Consensus 95 ~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 170 (556)
+...+.+++... +.++....+.-+...|..+.-++..+|+++.+.+.|++....-+. ..+.|+.+-..|...|.-
T Consensus 295 i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~ 373 (799)
T KOG4162|consen 295 IPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSD 373 (799)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccc
Confidence 344455554332 233333445568888888888999999999999999988664333 567889999999999998
Q ss_pred hHHHHHHHHHHhCCCccChh-hHHHHHHHHH-hhCcHHHHHHHHHHHHhccCCC--CCchhhHHHHHHHHhcc-------
Q 008727 171 DNALKMFDEMSHRGVEFSTI-GFGVFIWKFC-ENAKLGQVLSMLDEVRKRENSM--INGSVIAVLIIHGFCKG------- 239 (556)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~------- 239 (556)
..|..+++.-......|+.. .+-..-..|. +.+..++++.+-.++....+.. .-....|..+.-+|...
T Consensus 374 s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~ 453 (799)
T KOG4162|consen 374 SKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLK 453 (799)
T ss_pred hHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCCh
Confidence 88999888766544334333 3333333333 3366677766666665421111 11123333333333321
Q ss_pred ----CCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 008727 240 ----KRVEEAFKVLDELRIRE-CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314 (556)
Q Consensus 240 ----~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 314 (556)
....++++.+++..+.+ -.|++.-|-++ -|+..++++.|.+..++..+.+-.-+...|..+.-.+...+++.+
T Consensus 454 seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 454 SERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 12345677777776653 34444444333 356678889999999998888777777888888888888899999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHH----HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008727 315 AKELGEVIVSGKFTIDDDVLNALIG----SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390 (556)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 390 (556)
|..+.+.....-.. -++.+.. ...-++.+++++....+...-- .. ......++-....+....
T Consensus 532 Al~vvd~al~E~~~----N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we--------~~-~~~q~~~~~g~~~~lk~~ 598 (799)
T KOG4162|consen 532 ALDVVDAALEEFGD----NHVLMDGKIHIELTFNDREEALDTCIHKLALWE--------AE-YGVQQTLDEGKLLRLKAG 598 (799)
T ss_pred HHHHHHHHHHHhhh----hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHH--------hh-hhHhhhhhhhhhhhhhcc
Confidence 99888776653211 0111111 0113566666666655543100 00 001112222333333333
Q ss_pred HHhC--CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--C------HhHHHHHHHHHhhcCChhhHHHHHHH
Q 008727 391 LSAN--DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP--D------VSFYNSLMEACCREDLLRPAKKLWDQ 460 (556)
Q Consensus 391 ~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~------~~~~~~ll~~~~~~~~~~~a~~~~~~ 460 (556)
+.-. ...-.+.++..+..-... +...+..-.. +......| + ...|......+.+.+..++|...+.+
T Consensus 599 l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~E 675 (799)
T KOG4162|consen 599 LHLALSQPTDAISTSRYLSSLVAS--QLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLE 675 (799)
T ss_pred cccCcccccccchhhHHHHHHHHh--hhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 3211 111122233333222221 1111111011 22222222 2 23566777888899999999988888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHH--HHHHhhhCCCc
Q 008727 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFE--VFNKSVNHDVM 537 (556)
Q Consensus 461 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~~~ 537 (556)
..+.. .-....|......+...|++++|.+.|...... .|+ ..+..++...+.+.|+..-|.. ++..+.+.++.
T Consensus 676 a~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 676 ASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred HHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 87753 455677877788899999999999999999855 454 5677888899999998877777 99999999976
Q ss_pred ccHH
Q 008727 538 LARS 541 (556)
Q Consensus 538 ~~~~ 541 (556)
....
T Consensus 753 n~ea 756 (799)
T KOG4162|consen 753 NHEA 756 (799)
T ss_pred CHHH
Confidence 4443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.7e-08 Score=94.06 Aligned_cols=310 Identities=13% Similarity=0.083 Sum_probs=181.5
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 008727 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200 (556)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 200 (556)
+.-.....+...|++++|++.++.-...- .............+.+.|+.++|..+|..+.+.+ |+...|-..+..+.
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I-~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQI-LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH
Confidence 33344556677788888888887754442 2244566777777888888888888888887765 45555544443333
Q ss_pred -h-----hCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008727 201 -E-----NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE-EAFKVLDELRIRECKPDFIAYRIVAEEFKL 273 (556)
Q Consensus 201 -~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 273 (556)
- ..+.+...++++++... .|.....-. +.-.+.....+. .+...+..+..+|+++ +|+.+-..|..
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~---yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d 155 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEK---YPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKD 155 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHh---CccccchhH-hhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcC
Confidence 1 12455556666666554 222211111 111122211222 2333334444444321 23333333332
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHH--HHHH-hcCChhHHH
Q 008727 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL--IGSV-SSIDPRSAI 350 (556)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~-~~~~~~~a~ 350 (556)
.....-..+++....... ...+.+.... ....-+|+...|... -..+ ..|+.++|+
T Consensus 156 ~~K~~~i~~l~~~~~~~l---------------~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al 214 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSL---------------ESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKAL 214 (517)
T ss_pred hhHHHHHHHHHHHHHHhh---------------cccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 222222222222221110 0000000000 001122334344333 3334 368999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008727 351 VFFNFMIEKGRVPT-LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429 (556)
Q Consensus 351 ~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 429 (556)
+++++.+++. |+ +..|..-.+.+-..|++.+|.+.++.....+.. |-..-+-.+..+.+.|++++|.+++....+.
T Consensus 215 ~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 215 EYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 9999998875 44 677777888899999999999999999988765 7777777888889999999999999998887
Q ss_pred CCCCCHhH--------HHHHHHHHhhcCChhhHHHHHHHHHHc
Q 008727 430 GLDPDVSF--------YNSLMEACCREDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 430 ~~~p~~~~--------~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (556)
+..|-... ..-...+|.+.|++..|++-|..+.+.
T Consensus 292 ~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 292 DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 65443222 245567888999999999999888764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-09 Score=94.19 Aligned_cols=164 Identities=9% Similarity=0.094 Sum_probs=116.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCC
Q 008727 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450 (556)
Q Consensus 371 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 450 (556)
+.+.+-..++.++|.++|+...+.... ++....++...|.-.++.+-|+++++++.+.|+. +...|+.+.-+|...++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcc
Confidence 445566667777777777777765443 5666666667777777888888888888888776 77778888878888888
Q ss_pred hhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 008727 451 LRPAKKLWDQMFASGCSGN--LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528 (556)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 528 (556)
++-++.-|++....--.|+ ...|-.|.......|++.-|.+.|+-....+-. +...++.|.-.-.+.|++++|..++
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHH
Confidence 8888877777775533343 345666677777778888888888877765432 4566777766667788888888888
Q ss_pred HHhhhCCCc
Q 008727 529 NKSVNHDVM 537 (556)
Q Consensus 529 ~~m~~~~~~ 537 (556)
+......+.
T Consensus 453 ~~A~s~~P~ 461 (478)
T KOG1129|consen 453 NAAKSVMPD 461 (478)
T ss_pred HHhhhhCcc
Confidence 776655544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-06 Score=81.55 Aligned_cols=454 Identities=11% Similarity=0.013 Sum_probs=251.1
Q ss_pred HHHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHH--HHH
Q 008727 50 SLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF--IIP 127 (556)
Q Consensus 50 ~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~ 127 (556)
.++..+-.....+.+++|.+..+.+.... +.+...+..=+-++...+++++|..+.+. .+. ..+++. +=.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEK 85 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEK 85 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHH
Confidence 44444444444455777888777774433 45666677777788889999998855442 221 111111 234
Q ss_pred HHH--cCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhhCc
Q 008727 128 SLI--QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF-STIGFGVFIWKFCENAK 204 (556)
Q Consensus 128 ~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~ 204 (556)
+|| +.+..++|...++-..+ .+..+...-.+.+-+.|++++|.++|+.+.+.+..- +...-..++. .+.
T Consensus 86 AYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a----~~a 157 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA----VAA 157 (652)
T ss_pred HHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH----HHH
Confidence 444 78899999998883322 244477777788889999999999999998765321 1111111111 111
Q ss_pred HHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCC-------------CCCCHHH-HHHHHHH
Q 008727 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE-------------CKPDFIA-YRIVAEE 270 (556)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-------------~~p~~~~-~~~ll~~ 270 (556)
.-.+. +.+..... ..++...+......+...|++.+|+++++...+.+ ++-+..+ -..+.-+
T Consensus 158 ~l~~~-~~q~v~~v---~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 158 ALQVQ-LLQSVPEV---PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred hhhHH-HHHhccCC---CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 11111 22222221 11122222334566778899999999988872211 1111111 1223445
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH---HHHHHhcCCHHH--HHHHHHHHHcCCC----------CCCHHHHH
Q 008727 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREF---ILGLIVERRICE--AKELGEVIVSGKF----------TIDDDVLN 335 (556)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~--a~~~~~~~~~~~~----------~~~~~~~~ 335 (556)
+...|+.++|..++...++.... |....... +.+...-.++.. +...++....... .-.....|
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N 312 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN 312 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 66788999999988888776432 22211111 112222111111 1111111111000 00111122
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhc
Q 008727 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK--RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413 (556)
Q Consensus 336 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 413 (556)
..+-.+..+..+.+.++...+. +..| ...+.+++..+.+ ......+.+++...-+....-...+.-.+++.....
T Consensus 313 ~~lL~l~tnk~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 313 NALLALFTNKMDQVRELSASLP--GMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHHHHhhhHHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc
Confidence 2222222333333333332221 1222 2344444444332 224677777777777665444456677778888889
Q ss_pred CCHHHHHHHHH--------HHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHc--CCCCCHHH----HHHHHHH
Q 008727 414 GRLREAYGVIQ--------EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS--GCSGNLKT----YNILISK 479 (556)
Q Consensus 414 ~~~~~a~~~~~--------~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~----~~~li~~ 479 (556)
|+++.|++++. .+.+.+..|..+ ..+...+.+.++.+.|..++.+..+. .-.+.... +.-+...
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 99999999998 555555555544 45666677777777788887777642 11122222 3333334
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHh
Q 008727 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 531 (556)
-.+.|+-++|..+++++.+. ..+|..+...++.+|++. +++.|..+-+.+
T Consensus 468 ~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 45679999999999999875 356888888899998876 678888776654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-08 Score=97.31 Aligned_cols=244 Identities=20% Similarity=0.192 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHH
Q 008727 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKL-----GV-APRTND-YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334 (556)
Q Consensus 262 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 334 (556)
.+...+...|...|++++|+.+++...+. |. .|...+ .+.+...|...+++++|..+|+.+.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL----------- 268 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL----------- 268 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-----------
Confidence 34444666677777777777777665443 10 111111 1123334555555555555554332
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh---C--CC-CccHh-hHHHHH
Q 008727 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA---N--DY-FTDME-SYNVMV 407 (556)
Q Consensus 335 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~--~~-~~~~~-~~~~li 407 (556)
.+++...-...+.-..+++.|..+|.+.|++++|...++...+ . +. .|.+. .++.+.
T Consensus 269 ----------------~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 269 ----------------TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred ----------------HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 2222222222222345667777889999999998888877543 1 11 12222 466777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC---CCCCC----HhHHHHHHHHHhhcCChhhHHHHHHHHHHc----CC--CC-CHHHH
Q 008727 408 SFLCTSGRLREAYGVIQEMKRK---GLDPD----VSFYNSLMEACCREDLLRPAKKLWDQMFAS----GC--SG-NLKTY 473 (556)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~--~~-~~~~~ 473 (556)
..|+..+++++|..+++...+. -+.++ ..+++.+...|...|++++|.++++.++.. +- .+ ....+
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 7888899999999999875442 12222 368999999999999999999999998753 11 12 24567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC----CC-CCC-HhhHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 474 NILISKFSEVGEIEGALRLFHNMLEK----GV-APD-ATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
+.|...|.+.+++.+|.++|.+...- |. .|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 88999999999999999999886542 32 122 4568889999999999999999999875
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-08 Score=95.90 Aligned_cols=248 Identities=16% Similarity=0.121 Sum_probs=172.4
Q ss_pred CCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC-----C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhc---C
Q 008727 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-----E-CKPDFIA-YRIVAEEFKLMGSVFEREVVLKKKRKL---G 291 (556)
Q Consensus 222 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~---~ 291 (556)
.|....+...+...|...|+++.|+.+++...+. | ..|...+ .+.+...|...+++++|..+|+++... .
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4444455566888899999999999988876543 2 1334433 334666788899999999999988664 1
Q ss_pred CCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HH
Q 008727 292 VAPRT----NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT-LS 366 (556)
Q Consensus 292 ~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~ 366 (556)
.-++. .+++.|..+|.+.|++++|...++. |++++.+.... ..|. ..
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~---------------------------Al~I~~~~~~~-~~~~v~~ 326 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCER---------------------------ALEIYEKLLGA-SHPEVAA 326 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH---------------------------HHHHHHHhhcc-ChHHHHH
Confidence 11222 2455666689999999999887654 44455541111 1122 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCcc----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CC
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSA---NDYFTD----MESYNVMVSFLCTSGRLREAYGVIQEMKRK----GL--DP 433 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~--~p 433 (556)
.++.+...|+..+++++|..+++...+ .-+.++ ..+++.|...|...|++++|.+++++.+.. +- .+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 455566678888889988888876543 112222 347899999999999999999999987653 11 22
Q ss_pred C-HhHHHHHHHHHhhcCChhhHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 434 D-VSFYNSLMEACCREDLLRPAKKLWDQMFA----SG--CSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 434 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
. ...++.+...|.+.++..+|.++|.+... .| .+-...+|..|...|.+.|++++|.++.+...
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 45678888899999999999999887653 22 12235679999999999999999999988876
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-06 Score=77.14 Aligned_cols=269 Identities=13% Similarity=0.087 Sum_probs=164.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 008727 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND-YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338 (556)
Q Consensus 260 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (556)
|+.....+...+...|+.++|+..|++.+.. .|+..+ .......+...|+.+....+...+....-..-..++-.+-
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ 308 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence 4444555555555555555555555544332 121111 1111112234455555444444443321111122222222
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHH
Q 008727 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418 (556)
Q Consensus 339 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 418 (556)
..+...+++.|+.+-++.++.+.. +...+-.=...+...|+.++|.-.|+......+. +...|..++.+|...|++.+
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHH
Confidence 334455666666666665544321 2222222234567788999999889888776443 77789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHH-HHHhh-cCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHH
Q 008727 419 AYGVIQEMKRKGLDPDVSFYNSLM-EACCR-EDLLRPAKKLWDQMFASGCSGN-LKTYNILISKFSEVGEIEGALRLFHN 495 (556)
Q Consensus 419 a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~-~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (556)
|.-.-...... +.-+..+.+.+. ..|.. ...-++|..+++...+. .|+ ....+.+...+...|..+++..++++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 88777665543 223555555553 33332 23357888888887764 454 45667777888889999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 496 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
... ..||....+.|...+...+.+++|.+.|....+.++.
T Consensus 464 ~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 464 HLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 884 4788888899999999999999999999988888875
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.9e-09 Score=90.94 Aligned_cols=229 Identities=11% Similarity=0.040 Sum_probs=160.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH-HHHHHHHh
Q 008727 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR-EFILGLIV 308 (556)
Q Consensus 230 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~ 308 (556)
+.+..+|.+.|.+.+|.+.|+.-.+. .|-..||..|-.+|.+..+...|+.++.+-.+. -|...||. -..+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 57888899999999999999888776 566778888888999999999999888876653 34444443 23334555
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 008727 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388 (556)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 388 (556)
.++.+++.++++.+.+... .++.....+...|.-.++.+.|..+|
T Consensus 303 m~~~~~a~~lYk~vlk~~~-----------------------------------~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP-----------------------------------INVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC-----------------------------------ccceeeeeeeeccccCCChHHHHHHH
Confidence 5666666666666554422 23444444445566667777777777
Q ss_pred HHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCC
Q 008727 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD--VSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466 (556)
Q Consensus 389 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 466 (556)
+++.+.|+. ++..|+.+.-+|.-.+++|-++.-|++....--.|+ ...|-.+.......||+..|.+.|+-...++
T Consensus 348 RRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d- 425 (478)
T KOG1129|consen 348 RRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD- 425 (478)
T ss_pred HHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-
Confidence 777777776 777777777777777778877777777665433333 3456667777777788888888888777664
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 467 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.-+...+|.|.-.-.+.|++++|..+++...+.
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 445667777777777888888888888877644
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.6e-07 Score=76.66 Aligned_cols=85 Identities=16% Similarity=0.082 Sum_probs=55.1
Q ss_pred HHHhcCCHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 008727 305 GLIVERRICEAKELGEVIV-SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383 (556)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 383 (556)
.+.+.++++.|.+.+-.|. ......|+.+...+.-.-..+++.+..+-+.-+.+.+. -...||..++-.|||..-++.
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhH
Confidence 3456677777777766664 23344566665554444445666666666666666643 456788888888888888888
Q ss_pred HHHHHHH
Q 008727 384 LVEVYKV 390 (556)
Q Consensus 384 a~~~~~~ 390 (556)
|-.++-+
T Consensus 329 AADvLAE 335 (459)
T KOG4340|consen 329 AADVLAE 335 (459)
T ss_pred HHHHHhh
Confidence 8777654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.8e-06 Score=89.35 Aligned_cols=336 Identities=11% Similarity=0.023 Sum_probs=153.3
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCC----CCc--hhhHHHHHHHHh
Q 008727 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM----ING--SVIAVLIIHGFC 237 (556)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~--~~~~~~li~~~~ 237 (556)
....|+++.+...++.+.......+..........+...|+++++...+.......... ++. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 34456666666666554221111122222333444556677777777776664321100 000 111122334445
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---C--hhhHHHHHHHHHh
Q 008727 238 KGKRVEEAFKVLDELRIRECKPDF----IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP---R--TNDYREFILGLIV 308 (556)
Q Consensus 238 ~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~--~~~~~~ll~~~~~ 308 (556)
..|++++|...+++....-...+. ...+.+...+...|++++|...+++........ . ......+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 677777777777766542111111 233444445566777777777776665431110 0 1123334445666
Q ss_pred cCCHHHHHHHHHHHHcC----CCCC---CHHHHHHH-HHHHhcCChhHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHH
Q 008727 309 ERRICEAKELGEVIVSG----KFTI---DDDVLNAL-IGSVSSIDPRSAIVFFNFMIEKG--RVP--TLSTLSNLSKNLC 376 (556)
Q Consensus 309 ~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l-~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ll~~~~ 376 (556)
.|+++.|...+++.... +... ....+..+ ...+..|++++|...+.+..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 77777777766554431 1110 01111111 11234566666666665554321 111 1222233344455
Q ss_pred hcCChHHHHHHHHHHHhCCCCc-cHhhH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hHHHHHHHHHhh
Q 008727 377 KRNKSDELVEVYKVLSANDYFT-DMESY-----NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV---SFYNSLMEACCR 447 (556)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~ 447 (556)
..|+.+.|.+.++......... ....+ ...+..+...|+.+.|.+++............ ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 6666666666666553311000 00000 01112233456666666665544321111010 112344455556
Q ss_pred cCChhhHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 448 EDLLRPAKKLWDQMFAS----GCSGN-LKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 448 ~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.|+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666666666665532 21111 233444555566666666666666666655
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.1e-07 Score=83.79 Aligned_cols=217 Identities=11% Similarity=-0.015 Sum_probs=148.9
Q ss_pred hhHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHH
Q 008727 64 HSLALGFFNWASQQPNFTHS--PLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141 (556)
Q Consensus 64 ~~~a~~~f~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 141 (556)
.+.++..+..+.......|+ ...|..+...+...|+.+.|...|++..+.. +.+...|+.+...+...|++++|...
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34566666666544333333 3557777778889999999999999999876 56788999999999999999999999
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCC
Q 008727 142 FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221 (556)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 221 (556)
|+...+..+. +..+|..+..++...|++++|.+.|+...+.+ |+..........+...++.++|...|......
T Consensus 121 ~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--- 194 (296)
T PRK11189 121 FDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK--- 194 (296)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh---
Confidence 9999887544 66788889999999999999999999988764 33322222222344567899999999765543
Q ss_pred CCCchhhHHHHHHHHhccCCHHHHHHHHHHHhh---CCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008727 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI---REC--KP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291 (556)
Q Consensus 222 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 291 (556)
.+++...+ .+... ..|+...+ +.+..+.+ ..+ .| ....|..+...+.+.|++++|...|++..+..
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 12222222 23332 34444433 24444332 111 11 23567778888888888888888888887654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-07 Score=77.26 Aligned_cols=197 Identities=8% Similarity=-0.055 Sum_probs=149.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh
Q 008727 87 YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166 (556)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 166 (556)
...+.-.|...|++..|.+-+++.++.. +.+..++..+...|-+.|+.+.|.+.|++.....+. +-.+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 4445567788888888888888888876 556778888888888888888888888888876544 67788888888888
Q ss_pred cCCHhHHHHHHHHHHhCCCc-cChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHH
Q 008727 167 DGYIDNALKMFDEMSHRGVE-FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245 (556)
Q Consensus 167 ~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 245 (556)
.|++++|...|++......- --..+|..+..+..+.|+.+.|.+.|++..+. .|........+.....+.|++-.|
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHH
Confidence 88888888888887764322 23356666776777888888888888888876 555555666677788888888888
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 246 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
...++.....+. ++..+.-..|+.-...|+.+.+-+.=.++.+
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888888777765 7777777777777777877777665555544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-07 Score=76.29 Aligned_cols=200 Identities=9% Similarity=-0.108 Sum_probs=158.8
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 008727 120 SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199 (556)
Q Consensus 120 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 199 (556)
.+...|.-.|.+.|+...|..-+++..+..+. +..+|..+...|-+.|..+.|.+.|+...+... -+..+.|..-..+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHH
Confidence 35566777899999999999999999988544 667899999999999999999999999887642 3566777778888
Q ss_pred HhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008727 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279 (556)
Q Consensus 200 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 279 (556)
|..|++++|...|+..... +..+....+|..+.-+..+.|+.+.|...|++-.+.... ...+...+.....+.|++..
T Consensus 114 C~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 9999999999999999887 556666778888888888999999999999988876322 33456677778888899999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 008727 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324 (556)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (556)
|...++.....+. ++..+.-..|+.-...|+.+.+.+.-..+..
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9988888887766 7777776677777777887777665444443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.1e-07 Score=83.18 Aligned_cols=185 Identities=15% Similarity=0.033 Sum_probs=87.4
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHH
Q 008727 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422 (556)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 422 (556)
.|+.++|...|++..+... .+...|..+...+...|+++.|...|+...+..+. +...|..+...+...|++++|.+.
T Consensus 77 ~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 77 LGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred CCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444444444444444321 23455555556666666666666666666654433 344555555566666666666666
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---
Q 008727 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK--- 499 (556)
Q Consensus 423 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 499 (556)
++...+.. |+..........+...++.++|.+.+++..... .|+...+ . ......|+..++ +.++.+.+.
T Consensus 155 ~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~ 227 (296)
T PRK11189 155 LLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATD 227 (296)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCC
Confidence 66665542 222111111112233455666666665443221 2222111 1 122223333332 233333221
Q ss_pred CC--CC-CHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 500 GV--AP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 500 g~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
.. .| ....|..+...+.+.|++++|+..|++.++.++
T Consensus 228 ~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 228 NTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 00 00 123455566666666666666666666665554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.4e-07 Score=77.56 Aligned_cols=291 Identities=11% Similarity=0.057 Sum_probs=149.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHh
Q 008727 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237 (556)
Q Consensus 158 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (556)
++.+..+.+..++..|++++..-.++.. .+....+.|...|....++..|...++++... .|.-.....--...+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHH
Confidence 3444444444555555555554444321 13334444444555555555555555555433 2221111112234455
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 008727 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE--FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315 (556)
Q Consensus 238 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 315 (556)
+.+.+.+|+++...|.+. |+...-..-+.+ ....+++..+..++++....| +..+.+...-...+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 566666666666666542 122211111221 224455666666655543221 111222222233466777777
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-------------CHH--------HHHHHHH-
Q 008727 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP-------------TLS--------TLSNLSK- 373 (556)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~--------~~~~ll~- 373 (556)
.+-|....+-+--.....||..+..|++++...|++...++.++|++. |.. .-+.++.
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 777766665544445566777777777777777777777776665431 111 1122222
Q ss_pred ------HHHhcCChHHHHHHHHHHHhC-CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 374 ------NLCKRNKSDELVEVYKVLSAN-DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 374 ------~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
.+.+.|+++.|.+.+..|.-. .-..|++|...+.-.- ..+++.+..+-++-+...++- ...||..++-.||
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHh
Confidence 244667777777777666432 2234566655543322 234455555555555555443 3567777777888
Q ss_pred hcCChhhHHHHHHH
Q 008727 447 REDLLRPAKKLWDQ 460 (556)
Q Consensus 447 ~~~~~~~a~~~~~~ 460 (556)
+..-++.|-.++.+
T Consensus 322 KNeyf~lAADvLAE 335 (459)
T KOG4340|consen 322 KNEYFDLAADVLAE 335 (459)
T ss_pred hhHHHhHHHHHHhh
Confidence 87777777776654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.9e-05 Score=71.99 Aligned_cols=150 Identities=15% Similarity=0.208 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHhC-CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhhcCChhhHHHHH
Q 008727 381 SDELVEVYKVLSAN-DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP-DVSFYNSLMEACCREDLLRPAKKLW 458 (556)
Q Consensus 381 ~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 458 (556)
.+...++++++... ...|+ -+|...+..--+..-+..|..+|.+..+.+..+ ++..+++++..|| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 55566666666553 23333 367777887778888888999999988887776 6677788887776 46778888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD--ATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 459 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
+.=.+. +.-++.--...++-+...++-..|..+|++....++.|| ...|..++.-=..-|+...+.++-+++..
T Consensus 425 eLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 425 ELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 876654 233344445667777888888889999999888766554 46788888887888998888888887643
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-05 Score=76.97 Aligned_cols=197 Identities=9% Similarity=-0.035 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCCHH-hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKI-TLDSS-VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
..|..+...+...++.+.+.+.+....+... .++.. ........+...|++++|.+.+++..+..+. +...++. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hH
Confidence 3344444555556666666555555444321 12221 1222233455677888888888877665332 4444442 22
Q ss_pred HHHh----cCCHhHHHHHHHHHHhCCCccC-hhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHh
Q 008727 163 VLAS----DGYIDNALKMFDEMSHRGVEFS-TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237 (556)
Q Consensus 163 ~~~~----~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (556)
.+.. .+..+.+.+.+... ....|+ ......+...+...|++++|.+.+++.... .|.+...+..+...+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~p~~~~~~~~la~i~~ 159 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL---NPDDAWAVHAVAHVLE 159 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHH
Confidence 2222 34444444444431 111222 223334445566777777777777777765 4555566666777777
Q ss_pred ccCCHHHHHHHHHHHhhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 238 KGKRVEEAFKVLDELRIREC-KPDF--IAYRIVAEEFKLMGSVFEREVVLKKKR 288 (556)
Q Consensus 238 ~~~~~~~A~~~~~~m~~~~~-~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~ 288 (556)
..|++++|...+++...... .|+. ..|..+...+...|++++|..++++..
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 77777777777777665421 1222 234456666667777777777777664
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.2e-05 Score=70.08 Aligned_cols=270 Identities=10% Similarity=0.086 Sum_probs=139.1
Q ss_pred CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHH
Q 008727 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194 (556)
Q Consensus 115 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 194 (556)
++-++.....+...+...|+.++|+..|++.....+. +......-.-.+.+.|+.+....+...+.... .-...-|-.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 3445555666666666666666666666665443211 11122222222334555555555555444321 011122222
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008727 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274 (556)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 274 (556)
-........+++.|+.+-+...+. .+.+...+..-...+...++.++|.-.|+...... +-+...|.-|+.+|...
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~---~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDS---EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcc---CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhh
Confidence 222333445555555555555543 33333344333344445555666655555544331 12445555666666655
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHH---HHHHhcCChhHHHH
Q 008727 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL---IGSVSSIDPRSAIV 351 (556)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~a~~ 351 (556)
|++.+|.-.-+...+. ++.+..+...+ +.......-++|.+
T Consensus 382 ~~~kEA~~~An~~~~~------------------------------------~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL------------------------------------FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred chHHHHHHHHHHHHHH------------------------------------hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 6555554443332221 01111111111 11111123355555
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008727 352 FFNFMIEKGRVPT-LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430 (556)
Q Consensus 352 ~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 430 (556)
++++-+.. .|+ ....+.+...+...|..+.++.+++..... .||....+.+.+.+...+.+.+|++.|......+
T Consensus 426 f~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 426 FAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 55554432 233 344555667778888888888888876653 3688888888888888888888988888887764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-05 Score=73.69 Aligned_cols=407 Identities=13% Similarity=0.066 Sum_probs=204.9
Q ss_pred HHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-HHhHHHHHHHHHcC
Q 008727 54 RVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD-SSVYRFIIPSLIQG 132 (556)
Q Consensus 54 ~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 132 (556)
+....+..++...|+..|-.+..-.. +|...|..-..+++..|++.+|.+=-.+-++. .|+ ...|+....++.-.
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhc
Confidence 33444556778899998887765442 48888888899999999999987755555544 344 56888888889999
Q ss_pred CChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHH------HHHhC---CCccChhhHHHHHHHHHhh-
Q 008727 133 KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFD------EMSHR---GVEFSTIGFGVFIWKFCEN- 202 (556)
Q Consensus 133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~------~m~~~---~~~~~~~~~~~li~~~~~~- 202 (556)
|++++|+..|.+-.+.... +...++.|.+++.... ++.+.|. .+... ........|..++..+-+.
T Consensus 84 g~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred ccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 9999999999998877543 6677888888772110 1111111 11000 0000111222222211110
Q ss_pred ---------CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC--------HH----HHHHHHHHHhh-CCCCCC
Q 008727 203 ---------AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR--------VE----EAFKVLDELRI-RECKPD 260 (556)
Q Consensus 203 ---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--------~~----~A~~~~~~m~~-~~~~p~ 260 (556)
.++..+...+...... .+...|. .. .......++.+ ...+--
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~----------------~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~ 223 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDEL----------------LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEK 223 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccc----------------cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHh
Confidence 0000010000000000 0000000 00 00000000000 000001
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 008727 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340 (556)
Q Consensus 261 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (556)
..-...+.++..+..++..+++-+....+.. -+..-++..-.+|...|.+..+....+...+.|...- .-++.+-..
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-ad~klIak~ 300 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-ADYKLIAKA 300 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-HHHHHHHHH
Confidence 1223445555566666666666666665543 2333344444566666666666666555544433211 112222111
Q ss_pred Hh--------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHh
Q 008727 341 VS--------SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412 (556)
Q Consensus 341 ~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 412 (556)
+. .++++.++..|.+.......|+. ..+....+++....+...-.++..-. -...-...+.+
T Consensus 301 ~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~-e~r~kGne~Fk 370 (539)
T KOG0548|consen 301 LARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAE-EEREKGNEAFK 370 (539)
T ss_pred HHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHH-HHHHHHHHHHh
Confidence 11 24566666666665544443322 22333334444433333332222111 11112445566
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 008727 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492 (556)
Q Consensus 413 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 492 (556)
.|++..|+..+.+++..... |...|....-+|.+.|.+..|++-.+...+.. ++....|.-=..++....++++|.+.
T Consensus 371 ~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAlea 448 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEA 448 (539)
T ss_pred ccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777776533 66677777777777777777777666666542 23334444444455555667777777
Q ss_pred HHHHHHC
Q 008727 493 FHNMLEK 499 (556)
Q Consensus 493 ~~~m~~~ 499 (556)
|++.++.
T Consensus 449 y~eale~ 455 (539)
T KOG0548|consen 449 YQEALEL 455 (539)
T ss_pred HHHHHhc
Confidence 7777654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-05 Score=75.85 Aligned_cols=65 Identities=11% Similarity=-0.045 Sum_probs=31.0
Q ss_pred hHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-ccChh-hHHHHHHHHHhhCcHHHHHHHHHHHHhc
Q 008727 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGV-EFSTI-GFGVFIWKFCENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~ 218 (556)
...|..+...+...|+.+.+.+.+....+... .++.. ........+...|++++|.+.+++....
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555666666666666666555555444321 11111 1111122334455666666666655544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-05 Score=72.99 Aligned_cols=191 Identities=15% Similarity=0.161 Sum_probs=135.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHH-------HHHHHh
Q 008727 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM-------VSFLCT 412 (556)
Q Consensus 340 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~ 412 (556)
++...+++.|++.+....+.. -+..-++..-.+|...|.+..+...-....+.|.. ...-|+.+ ..+|.+
T Consensus 234 aykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 234 AYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhh
Confidence 355667888888888887765 45555666677788888888887777766655433 22223333 335566
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhH-------------------------HHHHHHHHhhcCChhhHHHHHHHHHHcCCC
Q 008727 413 SGRLREAYGVIQEMKRKGLDPDVSF-------------------------YNSLMEACCREDLLRPAKKLWDQMFASGCS 467 (556)
Q Consensus 413 ~~~~~~a~~~~~~m~~~~~~p~~~~-------------------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 467 (556)
.++++.++..|++.......|+... ...-...+.+.|++..|...|.++++.. +
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P 389 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P 389 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence 6788899999988776655555322 1222445678899999999999999886 6
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
-|...|....-+|.+.|.+..|++-.+..++. .|+ ...|..=..++....++++|.+.|.+..+.++
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 67888999999999999999999988888866 332 33343334455556689999999999888884
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-05 Score=84.48 Aligned_cols=338 Identities=9% Similarity=-0.041 Sum_probs=208.0
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC------ccCh--hhHHHHHHHH
Q 008727 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV------EFST--IGFGVFIWKF 199 (556)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------~~~~--~~~~~li~~~ 199 (556)
.....|+++.+...++.+.......++.........+...|+++++...+....+.-- .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777776653221112333344555566778999999999988754210 1111 1122233445
Q ss_pred HhhCcHHHHHHHHHHHHhccCCCCC--chhhHHHHHHHHhccCCHHHHHHHHHHHhhC----CC-CCCHHHHHHHHHHHH
Q 008727 200 CENAKLGQVLSMLDEVRKRENSMIN--GSVIAVLIIHGFCKGKRVEEAFKVLDELRIR----EC-KPDFIAYRIVAEEFK 272 (556)
Q Consensus 200 ~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~-~p~~~~~~~ll~~~~ 272 (556)
...|++++|...+++.......... .....+.+...+...|++++|...+++.... |- .+...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999988763111111 1233456667778899999999999887642 11 111234555666788
Q ss_pred hcCCHHHHHHHHHHHHhc----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCC--CCCHH--HHHHHH-HH
Q 008727 273 LMGSVFEREVVLKKKRKL----GVA--P-RTNDYREFILGLIVERRICEAKELGEVIVSGKF--TIDDD--VLNALI-GS 340 (556)
Q Consensus 273 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~--~~~~l~-~~ 340 (556)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+........ .+... .+..+. ..
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998876553 211 1 112233444566778999999998887654311 11111 121111 22
Q ss_pred HhcCChhHHHHHHHHHHHcCC--CCCHH--HH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCccH---hhHHHHHHHHH
Q 008727 341 VSSIDPRSAIVFFNFMIEKGR--VPTLS--TL--SNLSKNLCKRNKSDELVEVYKVLSANDYFTDM---ESYNVMVSFLC 411 (556)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~--~~~~~--~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~ 411 (556)
...|+.+.|...+........ ..... .. ...+..+...|+.+.|.+.+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 457899999999988754311 11111 10 11224455689999999998775542211111 11345667788
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 008727 412 TSGRLREAYGVIQEMKRK----GLDPD-VSFYNSLMEACCREDLLRPAKKLWDQMFASG 465 (556)
Q Consensus 412 ~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 465 (556)
..|+.++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999987653 32222 2456677778889999999999999999875
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=0.00017 Score=72.89 Aligned_cols=383 Identities=11% Similarity=0.137 Sum_probs=231.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCC--CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK--ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (556)
.|+..-...+.++...+-+.+.+++++.+.-.. +..+....+.|+-.-.+. +..+..+..+++.....+ .
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~-------~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP-------D 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch-------h
Confidence 355555566777777777777777777665432 222333444444444433 334455555555433211 2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhcc
Q 008727 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239 (556)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 239 (556)
+...+..++-+++|..+|+..-. +......|+. .-+.++.|.++-+... .+.+|..+..+-.+.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n--------~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN--------EPAVWSQLAKAQLQG 1117 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC--------ChHHHHHHHHHHHhc
Confidence 33445556667777777765432 2333333332 2366666766665553 257888888898999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008727 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319 (556)
Q Consensus 240 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 319 (556)
|.+.+|.+-|-+.- |...|..++....+.|.+++-...+....+...+|... ..++-+|++.+++.+..+++
T Consensus 1118 ~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 99999888875532 77788899999999999999988888777776666543 46788888888887766543
Q ss_pred HHHHcCCCCCCHHHHHHHH-HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc
Q 008727 320 EVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398 (556)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 398 (556)
. .|+......+- .++..+.++.|.-+|.. ...|..+...+...|++..|...-++..
T Consensus 1190 ~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAn------ 1247 (1666)
T KOG0985|consen 1190 A-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKAN------ 1247 (1666)
T ss_pred c-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhcc------
Confidence 1 12222222221 23444555555555532 3345666666777777777665544332
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (556)
+..+|..+-.+|...+.+.-| +|...++.....-..-++..|-..|-+++-+.+++...... ......|+-|.-
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELai 1321 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAI 1321 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHH
Confidence 455777777777666555433 33333333344556677788888888888887777665432 334556676666
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHh
Q 008727 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 531 (556)
.|++- ++++..+-++-.-.+ ...-.+++++-....|.+..-++.+-
T Consensus 1322 LYsky-kp~km~EHl~LFwsR------vNipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1322 LYSKY-KPEKMMEHLKLFWSR------VNIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHhc-CHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66654 344444444444322 22345788888888888888777653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.8e-07 Score=83.60 Aligned_cols=152 Identities=18% Similarity=0.172 Sum_probs=96.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh----c
Q 008727 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----E 448 (556)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~ 448 (556)
..+...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+.+ .|. +...+..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCc
Confidence 3455667777777766542 255566677777888888888888888877652 233 33334444332 2
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCH-HHHHHH
Q 008727 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL-QAAFEV 527 (556)
Q Consensus 449 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~a~~~ 527 (556)
+.+.+|..+|+++.+. +.+++.+.+.+..++...|++++|.+++.+..+.+.. |..+...++......|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3577888888887654 4677777888888888888888888888887655322 556666667766777776 666777
Q ss_pred HHHhhhCC
Q 008727 528 FNKSVNHD 535 (556)
Q Consensus 528 ~~~m~~~~ 535 (556)
+.++....
T Consensus 259 l~qL~~~~ 266 (290)
T PF04733_consen 259 LSQLKQSN 266 (290)
T ss_dssp HHHCHHHT
T ss_pred HHHHHHhC
Confidence 77776544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.00023 Score=71.87 Aligned_cols=389 Identities=10% Similarity=0.088 Sum_probs=253.4
Q ss_pred CCCCCCHHHHHHHhhhhhccC-hhHHHHHHHHhhhCC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH
Q 008727 43 LRDSLSPSLVARVINPYLLTH-HSLALGFFNWASQQP-NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120 (556)
Q Consensus 43 ~~~~~~~~~~~~~l~~~~~~~-~~~a~~~f~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 120 (556)
.+..-+|+-+.-..+.+...+ +.+-++++....-++ .|.-+...-|.++--.. .-+...+.++.+++..-+ .|+
T Consensus 978 l~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD-a~~-- 1053 (1666)
T KOG0985|consen 978 LPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD-APD-- 1053 (1666)
T ss_pred CCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC-chh--
Confidence 334457888877777776654 667778887765444 33334444444443333 345556666776665544 222
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 008727 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200 (556)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 200 (556)
+...+...+-+++|..+|++... +..+.+.|+.- -++.+.|.+.-++.. ....|+.+..+-.
T Consensus 1054 ----ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL 1115 (1666)
T KOG0985|consen 1054 ----IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQL 1115 (1666)
T ss_pred ----HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHH
Confidence 34556677889999999988732 55555555543 366777777666543 3468999999999
Q ss_pred hhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008727 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280 (556)
Q Consensus 201 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 280 (556)
+.|...+|++-|-.. +++..|..+++...+.|.|++-.+.+...+++.-+|.+.+ .||-+|++.+++.+.
T Consensus 1116 ~~~~v~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~el 1185 (1666)
T KOG0985|consen 1116 QGGLVKDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTEL 1185 (1666)
T ss_pred hcCchHHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHH
Confidence 999999988776433 4567888899999999999999999988887766666554 788899999998887
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-hcCChhHHHHHHHHHHHc
Q 008727 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEK 359 (556)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~a~~~~~~~~~~ 359 (556)
++++ ..||......+..-|...+.++.|.-+|..+. -|..+..-+ .-|++..|.+.-++.
T Consensus 1186 E~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKA--- 1246 (1666)
T KOG0985|consen 1186 EEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKA--- 1246 (1666)
T ss_pred HHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhc---
Confidence 7665 45777777788888889999998887776542 233332222 124455554443332
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 008727 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439 (556)
Q Consensus 360 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 439 (556)
.+..||..+..+|...+.+..|. |-..++.....-..-++..|-..|-+++.+.+++...... +.....|+
T Consensus 1247 ---ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfT 1317 (1666)
T KOG0985|consen 1247 ---NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFT 1317 (1666)
T ss_pred ---cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHH
Confidence 35678888888888777665542 3333333344456788999999999999999988754321 22445666
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 440 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
-|.-.|++- ++++..+-++..-.. .| .--++.++-+..-|.+..-++.+..+
T Consensus 1318 ELaiLYsky-kp~km~EHl~LFwsR---vN---ipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1318 ELAILYSKY-KPEKMMEHLKLFWSR---VN---IPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHh---cc---hHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 666666654 355555554444331 11 12356666666666666666665543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.8e-07 Score=83.56 Aligned_cols=253 Identities=12% Similarity=0.069 Sum_probs=127.7
Q ss_pred HHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC
Q 008727 54 RVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133 (556)
Q Consensus 54 ~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 133 (556)
.+-+.+-.|+...++.-.. . ....-..+......+.+++...|+++.+ +.++.... .|.......+...+...+
T Consensus 7 ~vrn~fy~G~Y~~~i~e~~-~-~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCINEAS-L-KSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPS 80 (290)
T ss_dssp HHHHHHCTT-HHHHCHHHH-C-HTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTST
T ss_pred HHHHHHHhhhHHHHHHHhh-c-cCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCcc
Confidence 4445555566666665444 2 1111111233344556777777776643 34444433 555555555544444434
Q ss_pred ChHHHHHHHHHHHhCCCCC-ChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHH
Q 008727 134 NTQKAFSVFNEVKFNCEDI-GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212 (556)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 212 (556)
+-+.++.-+++........ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.+
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l 154 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKEL 154 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555443332221 2222223334455567777777776532 24455566677777777777777777
Q ss_pred HHHHhccCCCCCchhh--HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 213 DEVRKRENSMINGSVI--AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 213 ~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
+.|.+. ..+...+ ..+.+..+.....+.+|.-+|+++.+. ..++..+.+.+..+....|++++|.+++.+....
T Consensus 155 ~~~~~~---~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 155 KNMQQI---DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHHCC---SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHHHhc---CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777654 2221111 123333333344677777777776554 4456667777777777777777777777766543
Q ss_pred CCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 008727 291 GVAPRTNDYREFILGLIVERRI-CEAKELGEVIV 323 (556)
Q Consensus 291 ~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~ 323 (556)
... +..+...++.+....|+. +.+.+.+.++.
T Consensus 231 ~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 231 DPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp -CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred ccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 221 233333444444444444 33444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.0001 Score=65.30 Aligned_cols=310 Identities=15% Similarity=0.133 Sum_probs=173.9
Q ss_pred HHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHhcC
Q 008727 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI-VAEEFKLMG 275 (556)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~ 275 (556)
+.+...|++..|+.-|....+. .|++..++..-...|...|+...|+.=+....+. +||-..-.. -...+.+.|
T Consensus 46 k~lla~~Q~sDALt~yHaAve~---dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEG---DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcC---CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3344444455555444444432 3333333322333444555555555555555543 454322111 122345566
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHH
Q 008727 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355 (556)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~ 355 (556)
.++.|..-|+.+++.... ..+ ...+..+.--.++- ......+.+++.+||...|+.....
T Consensus 121 ele~A~~DF~~vl~~~~s--~~~---~~eaqskl~~~~e~---------------~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPS--NGL---VLEAQSKLALIQEH---------------WVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred cHHHHHHHHHHHHhcCCC--cch---hHHHHHHHHhHHHH---------------HHHHHHHHHHhcCCchhhHHHHHHH
Confidence 666666666665554221 110 00111111000110 1112234455667777788887777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008727 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435 (556)
Q Consensus 356 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 435 (556)
+++-. +.+...+..-..+|...|++..|+.=++...+..-. +...+--+-..+...|+.+.++...++-.+. .||.
T Consensus 181 llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdH 256 (504)
T KOG0624|consen 181 LLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDH 256 (504)
T ss_pred HHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccch
Confidence 77643 235556666677888888888888777776665443 4555556667777788888888877777764 4554
Q ss_pred hH----HHHH---------HHHHhhcCChhhHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 436 SF----YNSL---------MEACCREDLLRPAKKLWDQMFASGCSGN---LKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 436 ~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.. |..+ +......+++.++.+..+...+..-... ...+..+-.+|...|++.+|++...+.++.
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~ 336 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI 336 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc
Confidence 32 1111 1122345667777777777666431111 223445566777788888998888888854
Q ss_pred CCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 500 GVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 500 g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
.|| ..++.--..+|.-...+++|+.-|++..+.+..
T Consensus 337 --d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 337 --DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred --CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 454 677777778888888888888888888776643
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-08 Score=58.50 Aligned_cols=31 Identities=35% Similarity=0.787 Sum_probs=13.4
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 008727 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNM 496 (556)
Q Consensus 466 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 496 (556)
+.||..||++||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-08 Score=57.88 Aligned_cols=34 Identities=35% Similarity=0.854 Sum_probs=32.2
Q ss_pred CCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 499 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
+|+.||..||++||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999983
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00013 Score=73.54 Aligned_cols=421 Identities=12% Similarity=0.007 Sum_probs=225.8
Q ss_pred ChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHH
Q 008727 99 QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFD 178 (556)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 178 (556)
+...+...|-+..+.. +.=...|..|...|+..-+...|.+.|++.-+.... +...+....+.|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3455555555444443 223457888888888888999999999999876543 77789999999999999999998844
Q ss_pred HHHhCCC-ccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCC
Q 008727 179 EMSHRGV-EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257 (556)
Q Consensus 179 ~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 257 (556)
..-+... ..-...|..+--.|.+.++...+..-|+...+. .|.+...|..+..+|.++|++..|.++|.+....
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~---dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT---DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC---CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 4433221 111122222333466778889999999988866 7888999999999999999999999999887654
Q ss_pred CCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhc------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-------H
Q 008727 258 KPDFIAYRIVAEE--FKLMGSVFEREVVLKKKRKL------GVAPRTNDYREFILGLIVERRICEAKELGEV-------I 322 (556)
Q Consensus 258 ~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-------~ 322 (556)
.|+. +|...-.+ -+..|.+.+++..+...... +..--..++..+...+...|-...+..+++. .
T Consensus 626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4443 33333222 45678899998888776543 1111122333333333333333333333332 2
Q ss_pred HcCCCCCCHHHHHHHHHHH---hcCChh----HHHH-HHHHHHHcCCCCC--------------------HHHHHHHHHH
Q 008727 323 VSGKFTIDDDVLNALIGSV---SSIDPR----SAIV-FFNFMIEKGRVPT--------------------LSTLSNLSKN 374 (556)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~~---~~~~~~----~a~~-~~~~~~~~~~~~~--------------------~~~~~~ll~~ 374 (556)
.......+...|-.+-.++ ..-.++ .... ++.+....+.-|+ ..++..+...
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGIN 784 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence 2222112222222221111 000000 0000 1111111121111 1112222211
Q ss_pred HHh----cC----ChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 375 LCK----RN----KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 375 ~~~----~g----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
|.+ .| +...|...+....+..-. +...||.+... ...|.+.-+...|-+-.....+ +..+|..+.-.+.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEE
Confidence 111 11 112344444443332211 34444444433 3345555555555444433222 4455666666666
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----CCCCCCHhhHHHHHHHHHccCCHH
Q 008727 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE----KGVAPDATTYTSLLEGLCQETNLQ 522 (556)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~l~~~~~~~g~~~ 522 (556)
...+++-|...|...+... +.|...|-...-.-...|+.-++..+|..--+ .|-.|+..-|.....--...|+.+
T Consensus 862 ~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e 940 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE 940 (1238)
T ss_pred ecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence 6667777777777666543 33455554444444456666666666655211 244455555555555556667766
Q ss_pred HHHHHHHHh
Q 008727 523 AAFEVFNKS 531 (556)
Q Consensus 523 ~a~~~~~~m 531 (556)
+-+...+++
T Consensus 941 ~~I~t~~ki 949 (1238)
T KOG1127|consen 941 ESINTARKI 949 (1238)
T ss_pred HHHHHhhhh
Confidence 666666655
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00024 Score=71.78 Aligned_cols=420 Identities=9% Similarity=-0.079 Sum_probs=237.2
Q ss_pred cChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHH
Q 008727 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141 (556)
Q Consensus 62 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 141 (556)
.+...|+..|-...+.. +.=...|..+.+.|....+...|.+-|+..-+.+ ..+......+...|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 34445555444433221 1123567778888877778888888888887766 45777888899999999999999988
Q ss_pred HHHHHhCCCC-CChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccC
Q 008727 142 FNEVKFNCED-IGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220 (556)
Q Consensus 142 ~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 220 (556)
.-...+.... .-...|-.+.-.|.+.++...|..-|+...+.++ -|...|..+..+|.+.|++..|.+.|......
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 4333222111 0112344455566778888889888888887653 37788889999999999999999999888755
Q ss_pred CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-------HH
Q 008727 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR------ECKPDFIAYRIVAEEFKLMGSVFEREVVLK-------KK 287 (556)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~-------~~ 287 (556)
.|.+...-.-..-.-+..|.+.+|...+...... +..--..++-.+...+.-.|-..++..+++ -.
T Consensus 626 -rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 626 -RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred -CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4443333333344456778888888888776532 111111222222222222232222333222 22
Q ss_pred HhcCCCCChhhHHHHHH-------------------H----HHhcCCH---H---HHHHHHHHHHcCCCCCCHHHHHHHH
Q 008727 288 RKLGVAPRTNDYREFIL-------------------G----LIVERRI---C---EAKELGEVIVSGKFTIDDDVLNALI 338 (556)
Q Consensus 288 ~~~~~~~~~~~~~~ll~-------------------~----~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (556)
......-+...|..+-. . .-..+.. + .+.+.+-.-++. .......||..+
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl-~~~~~~WyNLGi 783 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL-AIHMYPWYNLGI 783 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH-hhccchHHHHhH
Confidence 22221111111211111 1 1111111 1 000000000000 001223356666
Q ss_pred HHHhc----C----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHH
Q 008727 339 GSVSS----I----DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410 (556)
Q Consensus 339 ~~~~~----~----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 410 (556)
+.+.. + +...|+..+.+..+.. .+...+-..+......|++.-+.-.|-.-....+. ...+|..+...+
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLC--ANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHh--hccHHHHHHHHHhhccchhhhhhhhhhhhhhcccc-chhheeccceeE
Confidence 55441 1 3345666666665542 23333333444446667777666666554444433 666888888889
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHH----HcCCCCCHHHHHHHHHHHHccCCH
Q 008727 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF----ASGCSGNLKTYNILISKFSEVGEI 486 (556)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~ 486 (556)
.+..+++-|...|.......+. |...|--....-...|+.-++..+|..-. ..|-.|+..-|-....-....|+.
T Consensus 861 l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~ 939 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNI 939 (1238)
T ss_pred EecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccch
Confidence 9999999999999988876433 55566555445556788888888887622 223355555555555556667775
Q ss_pred HHHHHHH
Q 008727 487 EGALRLF 493 (556)
Q Consensus 487 ~~A~~~~ 493 (556)
++-+...
T Consensus 940 e~~I~t~ 946 (1238)
T KOG1127|consen 940 EESINTA 946 (1238)
T ss_pred HHHHHHh
Confidence 5544433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00058 Score=68.43 Aligned_cols=238 Identities=12% Similarity=0.059 Sum_probs=160.1
Q ss_pred CCHHHHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHhHhCCCCCCHHhHHH
Q 008727 47 LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSL--SLSRQINAIDSVLKQVKVNKITLDSSVYRF 124 (556)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 124 (556)
+....+..+...+..+++..|++-...+.++++ +. .|..++.++ .+.|+.++|..+++.....+. -|..|...
T Consensus 8 ~~err~rpi~d~ld~~qfkkal~~~~kllkk~P---n~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~ 82 (932)
T KOG2053|consen 8 MSERRLRPIYDLLDSSQFKKALAKLGKLLKKHP---NA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQF 82 (932)
T ss_pred cHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCC---Cc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHH
Confidence 445555566666667788899999998887764 32 344555554 589999999998888777664 38889999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhh--
Q 008727 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN-- 202 (556)
Q Consensus 125 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-- 202 (556)
+-..|.+.+..++|..+|+..... .|+......+..+|++.+++.+-.+.=-++.+. .+-+...|=.++......
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIF 159 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhcc
Confidence 999999999999999999999875 456778888888999888876544433333332 222444444455444432
Q ss_pred --------CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHH-HHhhCCCCCCHHHHHHHHHHHHh
Q 008727 203 --------AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD-ELRIRECKPDFIAYRIVAEEFKL 273 (556)
Q Consensus 203 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~-~m~~~~~~p~~~~~~~ll~~~~~ 273 (556)
--..-|.+.++.+.+..| ......-...-...+-..|++++|.+++. ...+.-..-+...-+.-+..+..
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKG-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL 238 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCC-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 123456777777777643 22222222223344556788999999984 34333223344444556677778
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 008727 274 MGSVFEREVVLKKKRKLGVA 293 (556)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~ 293 (556)
.+++.+..++-.++...|..
T Consensus 239 l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKGND 258 (932)
T ss_pred hcChHHHHHHHHHHHHhCCc
Confidence 89999998888888887654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.9e-06 Score=73.85 Aligned_cols=187 Identities=7% Similarity=-0.094 Sum_probs=121.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC---HHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh--H
Q 008727 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD---SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP--E 155 (556)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 155 (556)
......+..+...+...|+++.|...|+++.... +.+ ...+..+..++.+.|++++|...++.+.+..+.... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677788888889999999999999888764 222 246677888889999999999999999776443111 2
Q ss_pred hHHHHHHHHHhc--------CCHhHHHHHHHHHHhCCCccChh-hHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCch
Q 008727 156 ICNSLLAVLASD--------GYIDNALKMFDEMSHRGVEFSTI-GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226 (556)
Q Consensus 156 ~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 226 (556)
++..+..++.+. |++++|.+.|+.+.... |+.. .+..+... .. .. ... .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~~------~~~----------~ 166 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---LR------NRL----------A 166 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---HH------HHH----------H
Confidence 455555556554 67888888888887753 3322 22111110 00 00 000 0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIREC-KP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 227 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
.....+...+.+.|++++|...++...+... .| ....+..+..++.+.|++++|...++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112355667788888888888888776521 12 3456777888888888888888887777654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-05 Score=76.29 Aligned_cols=224 Identities=11% Similarity=0.052 Sum_probs=132.3
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHh
Q 008727 92 KSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYID 171 (556)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 171 (556)
..+.+.|++.+|.-.|+...+.+ |-+...|..|.......++-..|+..+++..+..+. +..+.-.|...|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 34456666777777777666665 456667777777777777777777777777666443 5566666667777777777
Q ss_pred HHHHHHHHHHhCCCc-----c---ChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHH
Q 008727 172 NALKMFDEMSHRGVE-----F---STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243 (556)
Q Consensus 172 ~a~~~~~~m~~~~~~-----~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 243 (556)
.|.++|+..+....+ + +...-.. ..+.....+....++|-++....+ ...++.++..|.-.|--.|+++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~-~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLP-TKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCC-CCCChhHHhhhHHHHhcchHHH
Confidence 777776665443210 0 0000000 122333444555556655555412 2244566666666677777777
Q ss_pred HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 244 EAFKVLDELRIRECKP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322 (556)
Q Consensus 244 ~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 322 (556)
.|.+.|+..... +| |...||-|...++...+..+|+..|++.++.....-..-|+ |.-+|...|.+++|.+.|-.+
T Consensus 448 raiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN-LGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh-hhhhhhhhhhHHHHHHHHHHH
Confidence 777777776654 33 45567777777777777777777777766643222222333 344666777777777665544
Q ss_pred H
Q 008727 323 V 323 (556)
Q Consensus 323 ~ 323 (556)
+
T Consensus 525 L 525 (579)
T KOG1125|consen 525 L 525 (579)
T ss_pred H
Confidence 4
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00016 Score=70.50 Aligned_cols=138 Identities=11% Similarity=0.155 Sum_probs=84.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCCh
Q 008727 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451 (556)
Q Consensus 372 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 451 (556)
+.+.....++.+|+.+++.+...+. -..-|..+.+.|+..|+++.|.++|.+. ..++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3444556677777777776665432 2234566667777777777777777542 1245566777777777
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHh
Q 008727 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 531 (556)
+.|.++-.+... -......|-+-..-+-++|++.+|.+++-... .|+. .|..|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 777777655542 23344455555555666777777777665442 2332 456677777777777777653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-05 Score=75.94 Aligned_cols=219 Identities=12% Similarity=0.012 Sum_probs=136.0
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHH
Q 008727 129 LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208 (556)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 208 (556)
+.+.|++.+|.-.|+......+. +..+|-.|....+.+++-..|+..+.+..+.+. -+....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHHH
Confidence 45677788888888887776544 777888888888888888888888888777642 2444555566667777777777
Q ss_pred HHHHHHHHhccCCCCCchhhHHHH---------HHHHhccCCHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHhcCCHH
Q 008727 209 LSMLDEVRKRENSMINGSVIAVLI---------IHGFCKGKRVEEAFKVLDELR-IRECKPDFIAYRIVAEEFKLMGSVF 278 (556)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l---------i~~~~~~~~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~ 278 (556)
.++++.-... .|+ ..|... -..+.....+....++|-++. ..+..+|...+..|--.|.-.|+++
T Consensus 373 l~~L~~Wi~~---~p~--y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRN---KPK--YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHh---Ccc--chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 7777666443 111 000000 011222223444555555543 3333456666666666666777777
Q ss_pred HHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008727 279 EREVVLKKKRKLGVAP-RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM 356 (556)
Q Consensus 279 ~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~ 356 (556)
+|.+.|+..+.. +| |...|+.|--.+....+.++|...|.+.++..+..-..-||..|++...|.+++|.+.|-..
T Consensus 448 raiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 777777776663 34 33456666667777777777777777777665555556677777666666666666665443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00036 Score=61.90 Aligned_cols=205 Identities=7% Similarity=-0.045 Sum_probs=109.5
Q ss_pred HHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008727 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277 (556)
Q Consensus 198 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 277 (556)
.+...||...|++++..+.+. .|-+...+..-..+|...|++..|+.=++...+.. .-++.++--+-..+...|+.
T Consensus 164 s~~~~GD~~~ai~~i~~llEi---~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEI---QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhc---CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhH
Confidence 344556666666666666654 55555666666666666776666665555444332 12344444455555666666
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008727 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI 357 (556)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~ 357 (556)
+.++...++.++. .||....-. .|-+ +.+..+.++.+. .....+++.++++..+...
T Consensus 240 ~~sL~~iRECLKl--dpdHK~Cf~---~YKk---lkKv~K~les~e---------------~~ie~~~~t~cle~ge~vl 296 (504)
T KOG0624|consen 240 ENSLKEIRECLKL--DPDHKLCFP---FYKK---LKKVVKSLESAE---------------QAIEEKHWTECLEAGEKVL 296 (504)
T ss_pred HHHHHHHHHHHcc--CcchhhHHH---HHHH---HHHHHHHHHHHH---------------HHHhhhhHHHHHHHHHHHH
Confidence 6666666665552 333321110 0111 111111111111 1122334555555555555
Q ss_pred HcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008727 358 EKGRVPT---LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430 (556)
Q Consensus 358 ~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 430 (556)
+...... ...+..+..++...|++.+|++.-.++.+.... |+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 297 k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 297 KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 5443311 223344556666777777777777777665432 46666666677777777778877777777653
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-05 Score=69.33 Aligned_cols=121 Identities=13% Similarity=0.147 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCC--HHHH
Q 008727 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF-SEVGE--IEGA 489 (556)
Q Consensus 413 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A 489 (556)
.++.+++...++...+.... |...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44555555556655554433 55666666666666666666666666666643 33455555555543 45555 3666
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 490 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
.+++++..+.+.. +...+..+...+.+.|++++|+..|+++.+.++
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 6666666655322 455555566666666666666666666665554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.1e-05 Score=68.30 Aligned_cols=185 Identities=14% Similarity=0.075 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHH
Q 008727 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK--SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423 (556)
Q Consensus 346 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 423 (556)
+++++..++++.+.+.+ +..++..--..+.+.|+ .+.+..+++.+.+.+.+ +..+|+...-.+...|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45555555555544332 22233333223334443 24566666666666554 6667777666677777777777777
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhhc---CCh----hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCHHHHHHH
Q 008727 424 QEMKRKGLDPDVSFYNSLMEACCRE---DLL----RPAKKLWDQMFASGCSGNLKTYNILISKFSEV----GEIEGALRL 492 (556)
Q Consensus 424 ~~m~~~~~~p~~~~~~~ll~~~~~~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~ 492 (556)
+++++.++. |...|+.....+.+. |.. ++..+...+++... +-|...|+.+...+... ++..+|.+.
T Consensus 166 ~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 777776554 556666555554443 222 34555555555543 44566677776666663 334557777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccC------------------CHHHHHHHHHHhhhCC
Q 008727 493 FHNMLEKGVAPDATTYTSLLEGLCQET------------------NLQAAFEVFNKSVNHD 535 (556)
Q Consensus 493 ~~~m~~~g~~p~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~~~~ 535 (556)
+.+..+.++. +......|+..|+... ..++|.++++.+.+.+
T Consensus 244 ~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d 303 (320)
T PLN02789 244 CLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVAD 303 (320)
T ss_pred HHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhC
Confidence 7776654322 4555666666666422 3467888888884333
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.6e-05 Score=75.02 Aligned_cols=259 Identities=11% Similarity=0.068 Sum_probs=159.4
Q ss_pred CCHHhHHHHHH--HHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhC-C--------C
Q 008727 117 LDSSVYRFIIP--SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR-G--------V 185 (556)
Q Consensus 117 ~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~--------~ 185 (556)
-|..|...++. .|..-|+.+.|.+-.+.+. +..+|..+.+.|.+..+.|-|.-.+-.|... | -
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 46667777765 4678899999998888775 5578999999999999999888887777542 1 1
Q ss_pred ccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 008727 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265 (556)
Q Consensus 186 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 265 (556)
.|+ .+-....-.....|.+++|+.+|.+.++. ..|=..|-..|.|++|.++-+.--+- . =..||-
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~-----------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy 862 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY-----------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYY 862 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHH
Confidence 122 22222333456778899999999888764 22345566788999998887643221 1 124555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cC
Q 008727 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SI 344 (556)
Q Consensus 266 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 344 (556)
.-...+-..++.+.|++.|++.... -...+..|.. ++.....+.+.+ .|...|.---.++. .|
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~h----afev~rmL~e------~p~~~e~Yv~~~------~d~~L~~WWgqYlES~G 926 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVH----AFEVFRMLKE------YPKQIEQYVRRK------RDESLYSWWGQYLESVG 926 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCCh----HHHHHHHHHh------ChHHHHHHHHhc------cchHHHHHHHHHHhccc
Confidence 5555566678888888888753211 0011111110 011111111111 12233332222322 47
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 008727 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424 (556)
Q Consensus 345 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 424 (556)
+.+.|+.+|....+ |-.+++..|-.|+.++|-++-++- | |....-.+.+.|-..|++.+|..+|.
T Consensus 927 emdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 927 EMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred chHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 77888887776543 455666667778888887776542 2 55566777888888888888888887
Q ss_pred HHH
Q 008727 425 EMK 427 (556)
Q Consensus 425 ~m~ 427 (556)
+..
T Consensus 992 rAq 994 (1416)
T KOG3617|consen 992 RAQ 994 (1416)
T ss_pred HHH
Confidence 654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-05 Score=71.22 Aligned_cols=61 Identities=11% Similarity=0.056 Sum_probs=48.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCC
Q 008727 475 ILISKFSEVGEIEGALRLFHNMLEKGV--APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 535 (556)
.+...|.+.|++.+|...+++..+... +.....+..+..++.+.|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 455678899999999999999987621 1234678889999999999999999998876543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.7e-05 Score=77.40 Aligned_cols=130 Identities=9% Similarity=0.020 Sum_probs=57.1
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCcc---ChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHH
Q 008727 155 EICNSLLAVLASDGYIDNALKMFDEMSHR-GVEF---STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230 (556)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 230 (556)
..|-..|....+.++.++|+++.++.... ++.- -...|.++++.-...|.-+...++|+++.+. -+...+|.
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy----cd~~~V~~ 1534 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY----CDAYTVHL 1534 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh----cchHHHHH
Confidence 34555555555555555555555554432 0100 0123334444333444444444444444432 12233444
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 231 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
.|...|.+...+++|-++|+.|.++ ..-....|...+..+.+.++-+.|..++.+.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4444555555555555555554443 112333444444444444444444444444433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-05 Score=66.24 Aligned_cols=158 Identities=15% Similarity=0.018 Sum_probs=87.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc
Q 008727 88 HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD 167 (556)
Q Consensus 88 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 167 (556)
...-..+.-.|+-+....+........ +.|.......+....+.|++..|+..|.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 344455555555555555554433321 3344555556666666677777777666665543 33666666666666666
Q ss_pred CCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHH
Q 008727 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247 (556)
Q Consensus 168 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 247 (556)
|+++.|..-|.+..+.-. -+...++.+.-.+.-.||.+.|..++...... .+.+..+-..+.......|++++|.+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~---~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS---PAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC---CCCchHHHHHHHHHHhhcCChHHHHh
Confidence 666666666666655321 13334444444555556666666666555543 23334444455555555666666655
Q ss_pred HHHH
Q 008727 248 VLDE 251 (556)
Q Consensus 248 ~~~~ 251 (556)
+...
T Consensus 224 i~~~ 227 (257)
T COG5010 224 IAVQ 227 (257)
T ss_pred hccc
Confidence 5443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.0016 Score=64.67 Aligned_cols=330 Identities=8% Similarity=0.036 Sum_probs=166.9
Q ss_pred cChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhC--------CCCCCHHhHHHHHHHHHcCC
Q 008727 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN--------KITLDSSVYRFIIPSLIQGK 133 (556)
Q Consensus 62 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~~ 133 (556)
++.+.|++-.+.+ .+...|..+.+.|.+.++++-|.--+-.|... ..+.+..+-..+.-.-.+.|
T Consensus 742 G~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELG 814 (1416)
T ss_pred ccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHh
Confidence 4455555544433 24568889999998888888776655555331 01111122223333445678
Q ss_pred ChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHH
Q 008727 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213 (556)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 213 (556)
.+++|..+|.+..+. ..|=..|-..|.+++|.++-+.--+-.. ..||-.-..-+-..+|.+.|++.|+
T Consensus 815 MlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred hHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHH
Confidence 888888888887653 2333445566888888776554322222 1344444445556677777777766
Q ss_pred HHHhc-----------c------CCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 008727 214 EVRKR-----------E------NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276 (556)
Q Consensus 214 ~~~~~-----------~------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 276 (556)
..... . -....+...|.-....+-..|+.+.|+.+|...++ |-.+++..|-.|+
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK 953 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence 43211 0 00011122333233334456667777666665442 2233444444455
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcC--------CCCCCHHHHHHHH----------
Q 008727 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG--------KFTIDDDVLNALI---------- 338 (556)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~---------- 338 (556)
.++|-.+-++- -|....-.+.+.|-..|++.+|..+|.....- ....+...+|..+
T Consensus 954 ~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~a 1027 (1416)
T KOG3617|consen 954 TDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSA 1027 (1416)
T ss_pred chHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHH
Confidence 55554444331 12222333444555555555555554433210 0111222222221
Q ss_pred -HHHh-c-CChhHHHHHHHH---------------------HHHc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008727 339 -GSVS-S-IDPRSAIVFFNF---------------------MIEK--GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392 (556)
Q Consensus 339 -~~~~-~-~~~~~a~~~~~~---------------------~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 392 (556)
.+|. . +..+.|..+|.+ ++.. ....|+...+...+.++...++++|..++-..+
T Consensus 1028 ArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1028 ARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1111 1 133333333321 1112 233456777777777888888888888877654
Q ss_pred h----------CCC----------------CccH----hhHHHHHHHHHhcCCHHHHHHHHHH
Q 008727 393 A----------NDY----------------FTDM----ESYNVMVSFLCTSGRLREAYGVIQE 425 (556)
Q Consensus 393 ~----------~~~----------------~~~~----~~~~~li~~~~~~~~~~~a~~~~~~ 425 (556)
+ .++ .|+. .....+...|.++|.+..|-+-|.+
T Consensus 1108 ~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1108 EFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 2 111 1122 1455566777788888888777654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00019 Score=66.25 Aligned_cols=187 Identities=9% Similarity=-0.027 Sum_probs=101.1
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC-ChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH--hH
Q 008727 96 LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK-NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI--DN 172 (556)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~ 172 (556)
..++.++|..+.+++++.. +-+..+|+..-..+...| ++++++..++++....++ +..+|+.....+.+.|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHH
Confidence 3456666666666666654 333444544444444555 466777777776665444 555666555555555542 55
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhcc---CC----HHHH
Q 008727 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG---KR----VEEA 245 (556)
Q Consensus 173 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~----~~~A 245 (556)
+.++++.+.+.+. -+..+|+....++...|+++++++.++++.+. .+.+..+|+.....+.+. |. .+++
T Consensus 127 el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 127 ELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 6666666666543 25566666666666667777777777777655 444455555443333332 11 2344
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHh
Q 008727 246 FKVLDELRIRECKPDFIAYRIVAEEFKLM----GSVFEREVVLKKKRK 289 (556)
Q Consensus 246 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~ 289 (556)
.+...+...... -|...|+.+...+... ++..+|.+.+.+...
T Consensus 203 l~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 203 LKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 555544444321 2445565555555542 233445555555444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.8e-05 Score=77.04 Aligned_cols=218 Identities=12% Similarity=0.011 Sum_probs=123.9
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhC-CCC---CChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhh
Q 008727 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN-CED---IGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191 (556)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 191 (556)
|.+...|-.-|....+.++.++|.+++++.... ++. --..+|.++++.-...|.-+...++|++..+.- -.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 344555666666666666666666666666432 110 012256666666666666666666666665532 12244
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC---HHHHHHHH
Q 008727 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD---FIAYRIVA 268 (556)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~ll 268 (556)
|..|...|.+.+++++|.++++.|.++.+ ....+|...+..+.++++-+.|..++.+..+. -|. .....-.+
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~---q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG---QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc---chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHH
Confidence 56666666666666666666666666533 33456666666666666666666666665543 222 12222333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHH
Q 008727 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD--DVLNALIGSV 341 (556)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~ 341 (556)
..-.+.|+.+.+..+|+.....-.+ ....|+..+..-.+.|+.+.++.+|++++..++.+.. ..|..-+.+-
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 3344566666666666666554322 2335666666666777777777777777666655543 3445555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00022 Score=69.61 Aligned_cols=337 Identities=14% Similarity=0.059 Sum_probs=153.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh
Q 008727 87 YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166 (556)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 166 (556)
-.+.++++...|+-++|-++-+ + +-.+ .+.|..|.+.|..-.|.+....=.. ...|......+..++.+
T Consensus 592 k~sy~q~l~dt~qd~ka~elk~----s----dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik 660 (1636)
T KOG3616|consen 592 KRSYLQALMDTGQDEKAAELKE----S----DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIK 660 (1636)
T ss_pred HHHHHHHHHhcCchhhhhhhcc----c----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHh
Confidence 3455677777777776654321 1 1112 2346778888887777665432211 12355566666666666
Q ss_pred cCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchh-hHHHHHHHHhccCCHHHH
Q 008727 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV-IAVLIIHGFCKGKRVEEA 245 (556)
Q Consensus 167 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A 245 (556)
..-+++|-.+|+.+..- ...+..|-+..-+.+|+++-+-.- |...+ .-......+...|+++.|
T Consensus 661 ~elydkagdlfeki~d~---------dkale~fkkgdaf~kaielarfaf------p~evv~lee~wg~hl~~~~q~daa 725 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDF---------DKALECFKKGDAFGKAIELARFAF------PEEVVKLEEAWGDHLEQIGQLDAA 725 (1636)
T ss_pred hHHHHhhhhHHHHhhCH---------HHHHHHHHcccHHHHHHHHHHhhC------cHHHhhHHHHHhHHHHHHHhHHHH
Confidence 66666666666655321 122222323333444444332221 00000 001122233344455555
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 008727 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325 (556)
Q Consensus 246 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 325 (556)
..-|-+... ....+.+......|.+|+.+++.++.... ...-|..+...|...|+++.|.++|.+.
T Consensus 726 inhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~--- 791 (1636)
T KOG3616|consen 726 INHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA--- 791 (1636)
T ss_pred HHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---
Confidence 444433221 11223334444555555555555444322 1223444455555555555555554322
Q ss_pred CCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHH
Q 008727 326 KFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404 (556)
Q Consensus 326 ~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 404 (556)
..++-.+.+|. .|.+++|.++-.+. .|.......|..-..-+-+.|++.+|+++|-.+.. |+
T Consensus 792 ------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~----- 854 (1636)
T KOG3616|consen 792 ------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD----- 854 (1636)
T ss_pred ------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----
Confidence 12333333433 24455555444332 22233334444444444555666666655543322 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 008727 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (556)
Q Consensus 405 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 484 (556)
..|+.|-+.|..+..+++.++-.-.. -..|...+..-+-..|+...|.+-|-+..+ |.+-+..|-..+
T Consensus 855 ~aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 855 KAIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASE 922 (1636)
T ss_pred HHHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhh
Confidence 23455666666666665555432111 122333444455555666666555544332 334444444455
Q ss_pred CHHHHHHH
Q 008727 485 EIEGALRL 492 (556)
Q Consensus 485 ~~~~A~~~ 492 (556)
-|++|.++
T Consensus 923 lw~dayri 930 (1636)
T KOG3616|consen 923 LWEDAYRI 930 (1636)
T ss_pred hHHHHHHH
Confidence 55544443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.0013 Score=62.16 Aligned_cols=409 Identities=12% Similarity=0.144 Sum_probs=241.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHH
Q 008727 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160 (556)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (556)
+.|..+|+.+|+-+..+ ..+++++.++++... .+.+...|..-|+.-.+.++++..+.+|.+.... ..+...|..-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 35778888888877665 888888888888764 3567778888888888888888888888888765 3367777776
Q ss_pred HHHHHhc-CCHhH----HHHHHHH-HHhCCCccCh-hhHHHHHHH---------HHhhCcHHHHHHHHHHHHhccCCCCC
Q 008727 161 LAVLASD-GYIDN----ALKMFDE-MSHRGVEFST-IGFGVFIWK---------FCENAKLGQVLSMLDEVRKRENSMIN 224 (556)
Q Consensus 161 i~~~~~~-g~~~~----a~~~~~~-m~~~~~~~~~-~~~~~li~~---------~~~~g~~~~a~~~~~~~~~~~~~~~~ 224 (556)
+..-.+. |+... ..+.|+- +.+.|+.+-. ..|+..+.- +....+++...++++++... + ..+
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t-P-m~n 170 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT-P-MHN 170 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC-c-ccc
Confidence 6654433 22222 2233333 2334433222 223333321 22334556666677766543 1 111
Q ss_pred chhhHHH-----------HHHHH--hccCCHHHHHHHHHHHhh--CCCCCCHHH---------------HHHHHHHHHhc
Q 008727 225 GSVIAVL-----------IIHGF--CKGKRVEEAFKVLDELRI--RECKPDFIA---------------YRIVAEEFKLM 274 (556)
Q Consensus 225 ~~~~~~~-----------li~~~--~~~~~~~~A~~~~~~m~~--~~~~p~~~~---------------~~~ll~~~~~~ 274 (556)
-...|+- ...-+ -+...+-.|.++++++.. +|......+ |-.+|.- -+.
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-Eks 249 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKS 249 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-Hhc
Confidence 1122221 01111 123345566666666542 232211111 2222221 111
Q ss_pred CCH---------HHHHHHHHHH-HhcCCCCChhh-HHHHH----HHHHhcCC-------HHHHHHHHHHHHcCCCCCCHH
Q 008727 275 GSV---------FEREVVLKKK-RKLGVAPRTND-YREFI----LGLIVERR-------ICEAKELGEVIVSGKFTIDDD 332 (556)
Q Consensus 275 ~~~---------~~a~~~~~~~-~~~~~~~~~~~-~~~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~ 332 (556)
+-. ....-.+++. .--+..|+... +...+ +.+...|+ .+++..+++..+..-...+..
T Consensus 250 NpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~ 329 (656)
T KOG1914|consen 250 NPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL 329 (656)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 100 0011111211 11233332221 11111 12222333 355666666665544333444
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc-cHhhHHHHH
Q 008727 333 VLNALIGSVS----SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT-DMESYNVMV 407 (556)
Q Consensus 333 ~~~~l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li 407 (556)
.+..+...-. .+..+.....++++...-..--..+|..+|+..-+..-+..|..+|.+..+.+..+ ++.++++++
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~m 409 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALM 409 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence 4444433211 11355666777777665444445678888888889999999999999999987776 778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccC
Q 008727 408 SFLCTSGRLREAYGVIQEMKRKGLDPDV-SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN--LKTYNILISKFSEVG 484 (556)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g 484 (556)
..||. ++..-|.++|+--.++ -+|. .--...+..+...++-..+..+|++....++.|+ ...|..++.-=..-|
T Consensus 410 Ey~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 410 EYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred HHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc
Confidence 98875 7889999999965554 2333 3445677778888999999999999999876665 478999999999999
Q ss_pred CHHHHHHHHHHHHHC
Q 008727 485 EIEGALRLFHNMLEK 499 (556)
Q Consensus 485 ~~~~A~~~~~~m~~~ 499 (556)
+...+.++-+++...
T Consensus 487 dL~si~~lekR~~~a 501 (656)
T KOG1914|consen 487 DLNSILKLEKRRFTA 501 (656)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999998888654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.4e-05 Score=75.11 Aligned_cols=214 Identities=14% Similarity=0.088 Sum_probs=111.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 008727 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308 (556)
Q Consensus 229 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 308 (556)
-..+...+...|-..+|..+|++.. .|.-+|.+|...|+..+|..+..+..+ -+||...|..+......
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccC
Confidence 3456777778888888888887643 455677777888888888877777666 45666677766666655
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 008727 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388 (556)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 388 (556)
..-+++|.++.+..-.+ ..+......+.+++++++.+.|+.-.+.+ +.-..+|-.+-.+..+.++++.|.+.|
T Consensus 470 ~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred hHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 55566666665544321 00000001122344455555444433322 112333444444444445555555555
Q ss_pred HHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHH
Q 008727 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462 (556)
Q Consensus 389 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 462 (556)
.......+. +...||.+-.+|.+.++-.+|...+++..+.+.. +...|...+....+.|.++.|++.+.++.
T Consensus 543 ~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 543 HRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 444443322 3334555555555555555555555554444422 33344444444444555555555544444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-05 Score=67.94 Aligned_cols=128 Identities=9% Similarity=0.155 Sum_probs=101.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-hhcCC--hhh
Q 008727 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC-CREDL--LRP 453 (556)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~--~~~ 453 (556)
..++.+++...++...+.++. |...|..+...|...|++++|...+++..+.... +...+..+..++ ...|+ .++
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHH
Confidence 356777788888887776655 7889999999999999999999999998887544 677777777764 56676 589
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhH
Q 008727 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508 (556)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 508 (556)
|.+++++..+.+ +-+...+..+...+.+.|++++|...|+++.+. ..|+..-+
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRT 181 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHH
Confidence 999999999875 457788888899999999999999999999876 34444433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00028 Score=72.89 Aligned_cols=147 Identities=6% Similarity=0.029 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
+...+..|+..+...+++++|.++.+...+.. +-....|-.+...+.+.++.+++..+ .+++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 34556666666666666666666666555442 22223333333344444443333332 2222
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCH
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 242 (556)
......++..+..++..|...+ -+...+-.+..+|-+.|+.+++...++++.+. .|.+..+.|.+...|... ++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~---D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKA---DRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHh-hH
Confidence 2223333333333333333322 12234444555555555555555555555554 344455555555555555 55
Q ss_pred HHHHHHHHHHh
Q 008727 243 EEAFKVLDELR 253 (556)
Q Consensus 243 ~~A~~~~~~m~ 253 (556)
++|.+++.+..
T Consensus 166 ~KA~~m~~KAV 176 (906)
T PRK14720 166 EKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.9e-05 Score=62.80 Aligned_cols=95 Identities=8% Similarity=-0.108 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 008727 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482 (556)
Q Consensus 403 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 482 (556)
+......+...|++++|...|+........ +...|..+..++...|++++|...|++..+.. +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 444555666677777777777776665432 55666667777777777777777777777653 4456666677777777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 008727 483 VGEIEGALRLFHNMLEK 499 (556)
Q Consensus 483 ~g~~~~A~~~~~~m~~~ 499 (556)
.|++++|...|+..++.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777644
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00022 Score=69.75 Aligned_cols=211 Identities=13% Similarity=0.120 Sum_probs=103.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-CC
Q 008727 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS-ID 345 (556)
Q Consensus 267 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 345 (556)
+...+...|-...|..++++.. .+..++.+|...|+..+|..+..+..+ -+|++..|..+.+...+ .-
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 3344555555566666555432 233455566666666666665555554 34455555544444332 23
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008727 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425 (556)
Q Consensus 346 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 425 (556)
+++|.++++..... .-..+.......++++++.+.|+.-.+.++- ...+|-...-+..+.+++..|.+.|..
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 45555555433221 0001111112245555555555554443222 334555555555555555555555555
Q ss_pred HHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 426 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
-....+. +...||++-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.+++|.+.+.++.+
T Consensus 545 cvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 545 CVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 5443211 23455555555555555555555555555554 34444455555555555555555555555543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00062 Score=63.68 Aligned_cols=149 Identities=15% Similarity=0.062 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHH
Q 008727 330 DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409 (556)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 409 (556)
...-|...+..+..+++++|+..++.+.... +-|..........+.+.|+..+|.+.++.+....+. ....+-.+.++
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~a 383 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQA 383 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHH
Confidence 3444555566666666666666666655442 224444445556666666666666666666665432 24455555666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 008727 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489 (556)
Q Consensus 410 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 489 (556)
|.+.|++.+|+.++++....... |+..|..|..+|...|+..++..-..+ .|...|+++.|
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A 444 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQA 444 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHH
Confidence 66666666666666666655333 566666666666666665555544332 34455666666
Q ss_pred HHHHHHHHHC
Q 008727 490 LRLFHNMLEK 499 (556)
Q Consensus 490 ~~~~~~m~~~ 499 (556)
...+....+.
T Consensus 445 ~~~l~~A~~~ 454 (484)
T COG4783 445 IIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHh
Confidence 6666666554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.3e-05 Score=63.92 Aligned_cols=158 Identities=18% Similarity=0.126 Sum_probs=98.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhc
Q 008727 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448 (556)
Q Consensus 369 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 448 (556)
..+-..+...|+-+....+.......... |....+..+....+.|++.+|...+.+..... .+|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444455556666666555554433222 44455556666677777777777777766653 34667777777777777
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 008727 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528 (556)
Q Consensus 449 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 528 (556)
|+.+.|..-|.+..+.. .-+...+|.|.-.|.-.|+.+.|..++......+.. |...-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777777776652 334455666666667777777777777777665433 4555555666666777777777665
Q ss_pred HH
Q 008727 529 NK 530 (556)
Q Consensus 529 ~~ 530 (556)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 54
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00014 Score=62.18 Aligned_cols=172 Identities=13% Similarity=0.114 Sum_probs=113.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008727 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431 (556)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 431 (556)
+.+.+.......+......-...|+..|++++|.+..+... +......=+..+.+..+.+-|.+.+++|.+-
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 34444444444343333333455788888888888777622 3334444445566777788888888888874
Q ss_pred CCCHhHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhh
Q 008727 432 DPDVSFYNSLMEACCR----EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507 (556)
Q Consensus 432 ~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 507 (556)
-+..|.+-|..++.+ .+.+..|.-+|++|.+. ..|+..+.+....++...|++++|..++++..++... ++.+
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpet 243 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPET 243 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHH
Confidence 255666666666643 34577888888888764 4788888888888888888888888888888877544 5667
Q ss_pred HHHHHHHHHccCCHHHH-HHHHHHhhhC
Q 008727 508 YTSLLEGLCQETNLQAA-FEVFNKSVNH 534 (556)
Q Consensus 508 ~~~l~~~~~~~g~~~~a-~~~~~~m~~~ 534 (556)
...++..-...|...++ .+.+.+....
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 76666666666665443 4444555443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0015 Score=56.14 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=128.3
Q ss_pred HHHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHH
Q 008727 50 SLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL 129 (556)
Q Consensus 50 ~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 129 (556)
..+..+-+.+-.|+...++..-......+ -++..-..+-++|...|.+....+ +++... .+.......+...+
T Consensus 10 d~LF~iRn~fY~Gnyq~~ine~~~~~~~~---~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~ 82 (299)
T KOG3081|consen 10 DELFNIRNYFYLGNYQQCINEAEKFSSSK---TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYL 82 (299)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHhhcccc---chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHh
Confidence 34445556666677766666554432222 234444445567777777655433 333332 33444444444444
Q ss_pred HcCCChHHHH-HHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHH
Q 008727 130 IQGKNTQKAF-SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208 (556)
Q Consensus 130 ~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 208 (556)
..-++.++-+ ++.+.+......-+......-...|...|++++|++...... +......=+..+.+..+++-|
T Consensus 83 ~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A 156 (299)
T KOG3081|consen 83 ELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLA 156 (299)
T ss_pred hCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433 334444433333232333344556777888888888776521 223333334456677788888
Q ss_pred HHHHHHHHhccCCCCCchhhHH----HHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008727 209 LSMLDEVRKRENSMINGSVIAV----LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284 (556)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 284 (556)
.+.++.|.+. ++..+.+ +.+......+.+.+|.-+|++|-++ ..|+..+.+-...++...|++++|..++
T Consensus 157 ~~~lk~mq~i-----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 157 EKELKKMQQI-----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred HHHHHHHHcc-----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 8888888754 2233333 3344444456688888888888764 4677777777777888888888888888
Q ss_pred HHHHhcCC
Q 008727 285 KKKRKLGV 292 (556)
Q Consensus 285 ~~~~~~~~ 292 (556)
++.+....
T Consensus 231 ~eaL~kd~ 238 (299)
T KOG3081|consen 231 EEALDKDA 238 (299)
T ss_pred HHHHhccC
Confidence 87776543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0011 Score=56.46 Aligned_cols=197 Identities=12% Similarity=0.122 Sum_probs=115.1
Q ss_pred ChhHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHH
Q 008727 345 DPRSAIVFFNFMIE---KG-RVPTLS-TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419 (556)
Q Consensus 345 ~~~~a~~~~~~~~~---~~-~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 419 (556)
+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++.+...-+. +..+-..-.-.+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchhhH
Confidence 34444444444432 12 333322 3344455566677777777777777664311 222211111223445777888
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 420 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+++++.+.+.... |..++--=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 8888877776532 5556655555555566666777766666654 5677778888888888888888888888887743
Q ss_pred CCCC-CHhhHHHHHHHHHcc---CCHHHHHHHHHHhhhCCCcccHHHHHHH
Q 008727 500 GVAP-DATTYTSLLEGLCQE---TNLQAAFEVFNKSVNHDVMLARSILSTF 546 (556)
Q Consensus 500 g~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~l 546 (556)
.| ++..+..+...+.-. .+.+-|.+++.+.++.++.-....+..+
T Consensus 184 --~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 184 --QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred --CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 33 334444444444332 3566777777777777765555555533
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.4e-05 Score=61.23 Aligned_cols=104 Identities=6% Similarity=-0.135 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh
Q 008727 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447 (556)
Q Consensus 368 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 447 (556)
+......+...|++++|...|+......+. +...|..+..++...|++++|...|++..+.... +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 445566778899999999999998887655 7788899999999999999999999999987543 77888889999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCC-HHHHHH
Q 008727 448 EDLLRPAKKLWDQMFASGCSGN-LKTYNI 475 (556)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ 475 (556)
.|+.++|...|+...+. .|+ ...|..
T Consensus 105 ~g~~~eAi~~~~~Al~~--~p~~~~~~~~ 131 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM--SYADASWSEI 131 (144)
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHH
Confidence 99999999999999885 444 444433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00017 Score=73.66 Aligned_cols=182 Identities=9% Similarity=0.057 Sum_probs=132.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHH
Q 008727 80 FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159 (556)
Q Consensus 80 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (556)
+..++..+..|..+..+.|.+++|..+++...+.. |-+......+...+.+.+++++|+..+++.....+. +....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 34678888888899999999999999999988875 456677788888899999999999999999887655 7778888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhcc
Q 008727 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239 (556)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 239 (556)
+..++.+.|++++|..+|++....+. -+..++..+...+-..|+.++|...|+..... ..+....|+..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~---~~~~~~~~~~~~------ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA---IGDGARKLTRRL------ 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---hCcchHHHHHHH------
Confidence 88899999999999999999987432 24677777888888889999999999988875 222234443322
Q ss_pred CCHHHHHHHHHHHhhCC----CCCCHHHHHHHHHHHHh
Q 008727 240 KRVEEAFKVLDELRIRE----CKPDFIAYRIVAEEFKL 273 (556)
Q Consensus 240 ~~~~~A~~~~~~m~~~~----~~p~~~~~~~ll~~~~~ 273 (556)
+++..-...++.+.-.+ ..........+|..+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 230 VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 23344445555554332 22233445555555544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.5e-05 Score=60.80 Aligned_cols=94 Identities=18% Similarity=0.190 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 008727 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482 (556)
Q Consensus 403 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 482 (556)
...+...+...|++++|.+.++.....+.. +...+..+...+...|++++|...++...+.+ +.+...+..+...|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 334444444555555555555555443321 34444445555555555555555555544432 3334444444455555
Q ss_pred cCCHHHHHHHHHHHHH
Q 008727 483 VGEIEGALRLFHNMLE 498 (556)
Q Consensus 483 ~g~~~~A~~~~~~m~~ 498 (556)
.|++++|...|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00062 Score=70.45 Aligned_cols=168 Identities=12% Similarity=0.030 Sum_probs=108.2
Q ss_pred CHHHHHHHhhhh-hccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHH
Q 008727 48 SPSLVARVINPY-LLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126 (556)
Q Consensus 48 ~~~~~~~~l~~~-~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 126 (556)
-.....+++..+ ..++++.|.+..+......+-.+....+..+ .+...++.+.+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh-----------------hhh
Confidence 445566788877 5577899999999765555433333333333 55566665554433 333
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHH
Q 008727 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206 (556)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 206 (556)
.......++.-+..+...+...+ -+..++-.|..+|-+.|+.++|..+|+++.+.+ +-|..+.+.+...|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 34444445544444444554432 255577888888888888888888888888876 34667777787778877 888
Q ss_pred HHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 008727 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255 (556)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 255 (556)
+|.+++...... |...+++..+.+++.++...
T Consensus 167 KA~~m~~KAV~~-----------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 167 KAITYLKKAIYR-----------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHH-----------------HHhhhcchHHHHHHHHHHhc
Confidence 888888776543 44455666666666666654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00048 Score=64.39 Aligned_cols=120 Identities=15% Similarity=0.170 Sum_probs=57.7
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHH
Q 008727 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243 (556)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 243 (556)
+...|.+++|+..++.+.... +-|..........+.+.++.++|.+.++.+... .|.....+..+..++.+.|+..
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChH
Confidence 334455555555555554431 112223333344455555555555555555544 3333444444555555555555
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288 (556)
Q Consensus 244 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 288 (556)
+|.++++...... +-|...|..|..+|...|+..++.....+..
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 5555555544432 2244555555555555555555554444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.6e-06 Score=49.70 Aligned_cols=33 Identities=52% Similarity=0.940 Sum_probs=24.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 008727 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504 (556)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 504 (556)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00037 Score=71.24 Aligned_cols=148 Identities=9% Similarity=-0.040 Sum_probs=121.8
Q ss_pred CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHH
Q 008727 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194 (556)
Q Consensus 115 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 194 (556)
.+.++..+..|.....+.|.+++|..+++...+..++ +...+..+..++.+.+++++|+..+++...... -+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHH
Confidence 4567889999999999999999999999999887544 677889999999999999999999999988753 24455666
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008727 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268 (556)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 268 (556)
+..++.+.|++++|..+|+++... .|.+..++..+...+-+.|+.++|...|+...+. ..|.+..|+..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 777888899999999999999975 5666788888899999999999999999998765 233445555443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.7e-06 Score=48.60 Aligned_cols=32 Identities=44% Similarity=0.788 Sum_probs=18.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 008727 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503 (556)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 503 (556)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.2e-05 Score=60.50 Aligned_cols=113 Identities=13% Similarity=0.084 Sum_probs=92.1
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 008727 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501 (556)
Q Consensus 422 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 501 (556)
.+++....... +......+...+...|++++|.+.++.+...+ +.+...|..+...|...|++++|...++...+.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 45555554322 34556677788889999999999999998865 5678889999999999999999999999988764
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 502 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
+.+...+..+...+...|++++|...+++..+.++.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 335677777888999999999999999999887743
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0001 Score=69.40 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 444 (556)
......++..+...++++.|.++++++.+.. |+ ....+++.+...++-.+|.+++++..+.... +..........
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3445566777777888888888888888764 33 4455777777778888888888888865332 56666667777
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
|.+.++.+.|.++.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888888888852 3345688888888888898888888887765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.3e-06 Score=48.03 Aligned_cols=33 Identities=39% Similarity=0.881 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 434 (556)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455566666666666666666666655555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00026 Score=66.66 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=102.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
....++..+...++++.|..+|+++.+.. |+. ...+.+.+...++-.+|.+++++..+.. +-+......-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455666667889999999999999874 553 4457888888888899999999999753 456677777778899
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 482 EVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
+.++++.|+++.+++.+. .|+ ..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999966 454 5699999999999999999999999874
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.7e-06 Score=47.26 Aligned_cols=33 Identities=42% Similarity=0.583 Sum_probs=24.2
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCcc
Q 008727 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187 (556)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 187 (556)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00011 Score=69.54 Aligned_cols=78 Identities=22% Similarity=0.241 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 369 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
.++++.|.+.|..+.+.++++.=...|+.||..++|.++..+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 344555555555555555555444455555555555555555555555555555554444443334444444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00035 Score=56.75 Aligned_cols=124 Identities=11% Similarity=0.121 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC---HHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh--HhHHHH
Q 008727 86 SYHSILKSLSLSRQINAIDSVLKQVKVNKITLD---SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP--EICNSL 160 (556)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 160 (556)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......++. .+.-.|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3556666666666665543 222 122233445555666666666666666554422221 133344
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHH
Q 008727 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213 (556)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 213 (556)
...+...|++++|+..++...... .....+......+.+.|++++|...|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555666666666654432221 122233334444444444444444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0075 Score=51.62 Aligned_cols=159 Identities=13% Similarity=0.098 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008727 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDV-LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379 (556)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 379 (556)
.++-+....|+.+.|...++.+.+.-+ .+..+ --..+..-..|.+++|+++++.+++.+ +.|..++..=+...-..|
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp-~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFP-GSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 334455555666666666665554431 12111 111111223466777777777777665 335556655555566667
Q ss_pred ChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHh---hcCChhhHH
Q 008727 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV-SFYNSLMEACC---REDLLRPAK 455 (556)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~---~~~~~~~a~ 455 (556)
+.-+|++-+....+.- ..|...|.-+...|...|++++|.-.++++.-. .|.. ..+..+...+. ...+.+.+.
T Consensus 135 K~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7667777776666643 348888888888888888888888888888765 3433 33333333332 334567778
Q ss_pred HHHHHHHHc
Q 008727 456 KLWDQMFAS 464 (556)
Q Consensus 456 ~~~~~~~~~ 464 (556)
++|.+..+.
T Consensus 212 kyy~~alkl 220 (289)
T KOG3060|consen 212 KYYERALKL 220 (289)
T ss_pred HHHHHHHHh
Confidence 888888764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00053 Score=55.72 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=20.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 008727 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529 (556)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 529 (556)
...+...|++++|+..++......+ ....+......|.+.|+.++|...|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444444444444433222111 22233333444444444444444444
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00019 Score=67.91 Aligned_cols=123 Identities=14% Similarity=0.122 Sum_probs=89.8
Q ss_pred CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHH
Q 008727 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK--GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473 (556)
Q Consensus 396 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 473 (556)
.+.+......++..+....+++.+..++.+.... ....-..|..++++.|.+.|..+++.++++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3346666777777777777778888887777664 12122345568888888888888888888887788888888888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 008727 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518 (556)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 518 (556)
|.|++.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888887776666677776666666665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.7e-05 Score=44.57 Aligned_cols=29 Identities=48% Similarity=0.843 Sum_probs=14.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 008727 472 TYNILISKFSEVGEIEGALRLFHNMLEKG 500 (556)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 500 (556)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34555555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.035 Score=54.63 Aligned_cols=175 Identities=14% Similarity=-0.030 Sum_probs=97.7
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhC-CCCC--------ChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCc
Q 008727 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN-CEDI--------GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186 (556)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 186 (556)
.|.+..|..|.+.-...-.++.|+..|-..... |++. +...-.+=+. +-.|++++|+++|-+|-+++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 477788888877766666667776666554321 2211 1111111122 224888999999888876653
Q ss_pred cChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCc---hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHH
Q 008727 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING---SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263 (556)
Q Consensus 187 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 263 (556)
.|..+.+.|||-.+.++++.- |...++ ..+|+.+...++....|++|.+.|..-...
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------- 825 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------- 825 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------
Confidence 455677778887777776543 222222 346777778888878888888877654321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008727 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319 (556)
Q Consensus 264 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 319 (556)
...+.++.+..++++-+.+.+.+.+ +....-.+...+.+.|.-++|.+.+
T Consensus 826 -e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHH
Confidence 1244555555555544444333221 2223333444555555555555443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0004 Score=51.14 Aligned_cols=75 Identities=17% Similarity=0.303 Sum_probs=44.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC-CccHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008727 372 SKNLCKRNKSDELVEVYKVLSANDY-FTDMESYNVMVSFLCTSG--------RLREAYGVIQEMKRKGLDPDVSFYNSLM 442 (556)
Q Consensus 372 l~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~~~~p~~~~~~~ll 442 (556)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.++++|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444666666666666666666 566666666666655432 2334556666666666666666666666
Q ss_pred HHHh
Q 008727 443 EACC 446 (556)
Q Consensus 443 ~~~~ 446 (556)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 6554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0048 Score=56.56 Aligned_cols=111 Identities=14% Similarity=0.062 Sum_probs=52.4
Q ss_pred HHhcc-CCHHHHHHHHHHHhh----CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----hh-hHHH
Q 008727 235 GFCKG-KRVEEAFKVLDELRI----RECKP--DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR-----TN-DYRE 301 (556)
Q Consensus 235 ~~~~~-~~~~~A~~~~~~m~~----~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~-~~~~ 301 (556)
.|-.. |+++.|.+.|++..+ .| .+ -...+..+...+.+.|++++|.++|++........+ .. .+..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 34444 556666665555432 11 11 112344455566677777777777776655432211 11 2223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCC--CCC--HHHHHHHHHHHhcCCh
Q 008727 302 FILGLIVERRICEAKELGEVIVSGKF--TID--DDVLNALIGSVSSIDP 346 (556)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~~~~l~~~~~~~~~ 346 (556)
.+-++...||...|.+.++......+ ..+ ......++.++..+|.
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~ 250 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDV 250 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCH
Confidence 33355556777777777776654432 111 2345555566665543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00036 Score=51.73 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=43.7
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 008727 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (556)
Q Consensus 441 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 520 (556)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+... .+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHh
Confidence 3444444555555555555554432 22224444455555555555555555555544321 122344445555555555
Q ss_pred HHHHHHHHHHhhh
Q 008727 521 LQAAFEVFNKSVN 533 (556)
Q Consensus 521 ~~~a~~~~~~m~~ 533 (556)
+++|...+++..+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00048 Score=50.76 Aligned_cols=30 Identities=7% Similarity=0.233 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 008727 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200 (556)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 200 (556)
-..+.+|+.|...+++|+..+|+.++..+.
T Consensus 86 ~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 86 TNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 345566666666666666666666665443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.2e-05 Score=42.97 Aligned_cols=31 Identities=32% Similarity=0.688 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
++|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999998874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0015 Score=50.93 Aligned_cols=26 Identities=15% Similarity=0.034 Sum_probs=11.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhC
Q 008727 230 VLIIHGFCKGKRVEEAFKVLDELRIR 255 (556)
Q Consensus 230 ~~li~~~~~~~~~~~A~~~~~~m~~~ 255 (556)
..+...+.+.|+.++|.+.++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 33444444444444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0016 Score=50.73 Aligned_cols=97 Identities=11% Similarity=0.021 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCC--CCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC--CChHhHHHHHH
Q 008727 87 YHSILKSLSLSRQINAIDSVLKQVKVNKI--TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCED--IGPEICNSLLA 162 (556)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~ 162 (556)
+..+...+.+.|++++|.+.|+.+.+... +.....+..+...+.+.|+++.|...|+.+....+. ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444444455555555555555544320 011223334444455555555555555554432211 11233444444
Q ss_pred HHHhcCCHhHHHHHHHHHHhC
Q 008727 163 VLASDGYIDNALKMFDEMSHR 183 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~ 183 (556)
++.+.|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 444445555555555544443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00086 Score=49.62 Aligned_cols=94 Identities=19% Similarity=0.224 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 008727 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482 (556)
Q Consensus 403 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 482 (556)
+..+...+...|++++|...+++..+.... +...+..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 444555666667777777777776665322 33556666666777777777777777766653 3344566677777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 008727 483 VGEIEGALRLFHNMLE 498 (556)
Q Consensus 483 ~g~~~~A~~~~~~m~~ 498 (556)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777777654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.042 Score=48.87 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=31.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 267 VAEEFKLMGSVFEREVVLKKKRKL--GVAPRTNDYREFILGLIVERRICEAKELGEVI 322 (556)
Q Consensus 267 ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 322 (556)
+...|.+.|.+..|..-++.+.+. +..........+..+|...|..++|.+....+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 334466666666666666666654 23333334455556666666666666554433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0018 Score=54.22 Aligned_cols=104 Identities=20% Similarity=0.401 Sum_probs=64.8
Q ss_pred ccHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHH
Q 008727 398 TDMESYNVMVSFLCTS-----GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472 (556)
Q Consensus 398 ~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 472 (556)
.+..+|..+++.|.+. |.++=....++.|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F---------- 112 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF---------- 112 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh----------
Confidence 3777888888887654 5677777777888888888888888888887764 2211 111111110
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 008727 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (556)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 520 (556)
.-| ..+-+-|++++++|...|+.||..++..++..+.+.+.
T Consensus 113 -----~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 -----MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 001 12334566777777777777777777777777666554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00015 Score=52.45 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=33.7
Q ss_pred CChhhHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 008727 449 DLLRPAKKLWDQMFASGC-SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527 (556)
Q Consensus 449 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 527 (556)
|+++.|+.+++++.+..- .++...+-.+..+|.+.|++++|.+++++ .+.+.. +......+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 445555555555554321 11233333345555555555555555544 211111 112222334445555555555555
Q ss_pred HHH
Q 008727 528 FNK 530 (556)
Q Consensus 528 ~~~ 530 (556)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0045 Score=51.98 Aligned_cols=83 Identities=14% Similarity=0.093 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD--VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (556)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444445555555555555555554322221 2345555555555555555555555555432 2233444444445
Q ss_pred HHccCC
Q 008727 480 FSEVGE 485 (556)
Q Consensus 480 ~~~~g~ 485 (556)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 555444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0072 Score=59.99 Aligned_cols=140 Identities=13% Similarity=0.061 Sum_probs=78.7
Q ss_pred CCccHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhhcC--------ChhhHHHHHHHH
Q 008727 396 YFTDMESYNVMVSFLCTS-----GRLREAYGVIQEMKRKGLDPD-VSFYNSLMEACCRED--------LLRPAKKLWDQM 461 (556)
Q Consensus 396 ~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~--------~~~~a~~~~~~~ 461 (556)
.+.+...|...+++.... +..+.|..+|++..+. .|+ ...|..+..++.... +...+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 334566666666664332 2255677777777665 333 233333333222111 122333333332
Q ss_pred HHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCccc
Q 008727 462 FAS-GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539 (556)
Q Consensus 462 ~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 539 (556)
... ....+...|.++.-.....|++++|...++++.+.. |+...|..+...+...|+.++|.+.+++..+.++...
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 222 123345666666656666777777777777777553 5666777777777777777777777777777665543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.015 Score=46.60 Aligned_cols=96 Identities=8% Similarity=0.007 Sum_probs=70.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
..-.+..-+...|++++|.++|+-+....+. +..-|-.|.-+|-..|++++|+..|....... +-|+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3444445566778888888888877776433 55566777777778888888888888888765 456777777788888
Q ss_pred ccCCHHHHHHHHHHHHHC
Q 008727 482 EVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~ 499 (556)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888888877754
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0023 Score=60.68 Aligned_cols=87 Identities=15% Similarity=0.048 Sum_probs=39.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhH
Q 008727 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454 (556)
Q Consensus 375 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 454 (556)
+...|+++.|++.|+++.+.... +...|..+..+|...|++++|+..+++..+.... +...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHH
Confidence 33444555555555544444332 3344444444444444555554444444443221 333444444444444444444
Q ss_pred HHHHHHHHH
Q 008727 455 KKLWDQMFA 463 (556)
Q Consensus 455 ~~~~~~~~~ 463 (556)
...|++..+
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 444444444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0035 Score=57.22 Aligned_cols=130 Identities=11% Similarity=0.074 Sum_probs=79.2
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHH-HHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 008727 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK-FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233 (556)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 233 (556)
.+|..+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. .+.+...|...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK---FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCCHHHHHHHH
Confidence 356677777777777777777777776533 1223333333323 33346666677777777766 555566677777
Q ss_pred HHHhccCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 234 HGFCKGKRVEEAFKVLDELRIRECKPDF----IAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 234 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
+.+.+.++.+.|..+|++.... .|.. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777777655 2233 36666666666677777777776666553
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0015 Score=54.64 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcC----------------CHHHHHH
Q 008727 363 PTLSTLSNLSKNLCK-----RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG----------------RLREAYG 421 (556)
Q Consensus 363 ~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------~~~~a~~ 421 (556)
.+..+|..+++.|.+ .|.++=....+..|.+.|+.-|..+|+.|++.+=+.. +-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 355566666666553 4666667777777888888888888888887765421 2345566
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhhcC
Q 008727 422 VIQEMKRKGLDPDVSFYNSLMEACCRED 449 (556)
Q Consensus 422 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 449 (556)
++++|...|+.||..++..+++.+++.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 6666666666666666666666665444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.082 Score=49.51 Aligned_cols=115 Identities=18% Similarity=0.133 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHH----HHHhh---cCChhhHHHHHHHHHHcCCCCC----HHHHHHHHHH--HHc
Q 008727 416 LREAYGVIQEMKRKGLDPDVSFYNSLM----EACCR---EDLLRPAKKLWDQMFASGCSGN----LKTYNILISK--FSE 482 (556)
Q Consensus 416 ~~~a~~~~~~m~~~~~~p~~~~~~~ll----~~~~~---~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~--~~~ 482 (556)
-++|+++++...+-.. -|...-|.+. .+|.. ...+.+-..+-+-+.+.|++|- ...-|.|.+| +..
T Consensus 396 dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 5677777777665421 1333322222 22322 1223334444444556677664 3344445443 457
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 483 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
+|++.++.-.-..+. .+.|++.+|..+.-++....++++|.+++.++.-
T Consensus 475 qgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred cccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 899999887766665 4689999999988888999999999999997644
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00019 Score=51.85 Aligned_cols=82 Identities=13% Similarity=0.234 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 008727 413 SGRLREAYGVIQEMKRKGLD-PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491 (556)
Q Consensus 413 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 491 (556)
.|+++.|+.+++++.+.... |+...+..+..+|.+.|++++|..+++. .+.+ ..+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999987542 2455666689999999999999999998 3332 2233445566889999999999999
Q ss_pred HHHHH
Q 008727 492 LFHNM 496 (556)
Q Consensus 492 ~~~~m 496 (556)
++++.
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99863
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0026 Score=53.26 Aligned_cols=94 Identities=17% Similarity=0.047 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008727 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP--DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (556)
Q Consensus 401 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (556)
..|..+...+...|++++|+..|++.......| ...+|..+...+...|++++|+..++...+.. +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 345555666666677777777777666543222 12356666667777777777777777766542 223344555555
Q ss_pred HHH-------ccCCHHHHHHHHHH
Q 008727 479 KFS-------EVGEIEGALRLFHN 495 (556)
Q Consensus 479 ~~~-------~~g~~~~A~~~~~~ 495 (556)
.+. ..|++++|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 555 55555544444433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0032 Score=57.43 Aligned_cols=131 Identities=17% Similarity=0.148 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHH-HHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPS-LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 163 (556)
.+|..+++..-+.+..+.|+++|.+..+.+ ..+..+|...... +...++.+.|.++|+...+. ...+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 457777888888888888899998888654 3344455444444 23346666788888888765 34477888888888
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCccCh---hhHHHHHHHHHhhCcHHHHHHHHHHHHhc
Q 008727 164 LASDGYIDNALKMFDEMSHRGVEFST---IGFGVFIWKFCENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 218 (556)
+.+.|+.+.|..+|++.... +.++. ..|...+.--.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888765 22222 36666666666667777777776666654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.002 Score=56.63 Aligned_cols=101 Identities=14% Similarity=0.069 Sum_probs=80.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhh
Q 008727 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453 (556)
Q Consensus 374 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 453 (556)
-+.+.+++.+|+..|...++..+. |.+-|..=..+|.+.|.++.|++-.+..+..... ...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 377889999999999999887765 7778888888999999999998888887775322 35688899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH
Q 008727 454 AKKLWDQMFASGCSGNLKTYNILIS 478 (556)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~li~ 478 (556)
|.+.|++.++ +.|+-.+|-.=+.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHH
Confidence 9999988887 5677766654443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.01 Score=54.43 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHH----CCCCCC--HhHHHHHHHHHhhc-CChhhHHHHHHHHHHc----CCCCC--HHHHHHHHHHHH
Q 008727 415 RLREAYGVIQEMKR----KGLDPD--VSFYNSLMEACCRE-DLLRPAKKLWDQMFAS----GCSGN--LKTYNILISKFS 481 (556)
Q Consensus 415 ~~~~a~~~~~~m~~----~~~~p~--~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~ 481 (556)
++++|.+.+++..+ .| .|+ ..++..+...|... |++++|++.|++..+. | .+. ..++..+...+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 55555555554432 12 111 23455555666666 7777777777776643 2 111 334556667777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCC-----CHh-hHHHHHHHHHccCCHHHHHHHHHHhhhCCC----cccHHHHHHHHHHHh
Q 008727 482 EVGEIEGALRLFHNMLEKGVAP-----DAT-TYTSLLEGLCQETNLQAAFEVFNKSVNHDV----MLARSILSTFMISLC 551 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~g~~p-----~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~l~~~~~ 551 (556)
+.|++++|.++|++....-... +.. .|-..+-++...||+..|.+.+++.....+ .....+...||.+|-
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 7888888888887776542211 111 122233345566777788888877765542 223455566666553
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.007 Score=50.82 Aligned_cols=64 Identities=22% Similarity=0.116 Sum_probs=36.6
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC--hHhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008727 120 SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEICNSLLAVLASDGYIDNALKMFDEMSHR 183 (556)
Q Consensus 120 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 183 (556)
..+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+++..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455555556666666666666666654432221 245556666666666666666666665553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.08 Score=47.10 Aligned_cols=183 Identities=7% Similarity=-0.008 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhH---HHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHH
Q 008727 84 PLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY---RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160 (556)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (556)
+..+-.....+...|++++|.+.|+.+.... +-+.... -.+..++.+.+++++|...+++..+.-+.-...-|...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3333344455556777777777777777653 2222222 34556667777777777777777665433222333333
Q ss_pred HHHHHh--c---------------CCH---hHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccC
Q 008727 161 LAVLAS--D---------------GYI---DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220 (556)
Q Consensus 161 i~~~~~--~---------------g~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 220 (556)
+.+.+. . .+. .+|.+.|+++++. |=...-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH--
Confidence 333321 1 111 2334444444443 22222233333333333322
Q ss_pred CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR--ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288 (556)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 288 (556)
. ..--..+...|.+.|.+..|..-|+.+.+. +..........++.+|...|..++|.+....+.
T Consensus 174 -l---a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -L---AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -H---HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 001123566788888888888888888765 222233456677788888888888877765543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.19 Score=51.35 Aligned_cols=207 Identities=10% Similarity=0.040 Sum_probs=133.6
Q ss_pred CCCCHHHHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHH
Q 008727 45 DSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124 (556)
Q Consensus 45 ~~~~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 124 (556)
|+..-..+...+..+..+..++|+.+.+....-++ .|..+...+-..|.+.++.++|..+|++..+.. |+......
T Consensus 40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~ 115 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYH 115 (932)
T ss_pred CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHH
Confidence 34444455556666656777888887776533333 377888888888999999999999999998875 67888888
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC----------HhHHHHHHHHHHhCC-CccChhhHH
Q 008727 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY----------IDNALKMFDEMSHRG-VEFSTIGFG 193 (556)
Q Consensus 125 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~-~~~~~~~~~ 193 (556)
+..+|++.+++.+-.++--++-+.-++ .+..+=++++.+.+... ..-|.+.++.+.+.+ ..-+..-..
T Consensus 116 lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~ 194 (932)
T KOG2053|consen 116 LFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII 194 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH
Confidence 999999998877654444444332122 44444444555544311 234666777776654 211222222
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCC
Q 008727 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257 (556)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 257 (556)
.-...+-..|++++|.+++..-... -..+.+...-+.-+..+...+++.+..++-.++..+|.
T Consensus 195 Lyl~iL~~~~k~~eal~~l~~~la~-~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 195 LYLLILELQGKYQEALEFLAITLAE-KLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 2233556789999999998433322 11222233335567888889999999999888888753
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.16 Score=50.32 Aligned_cols=204 Identities=11% Similarity=0.035 Sum_probs=115.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhC-CCCC--------CHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 008727 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVN-KITL--------DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCED 151 (556)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 151 (556)
.|.+..|..+.......-.++.|+..|-+...- |++. +...-.+=+. +--|++++|.++|-++.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence 378889988888877777888888777655432 2211 1111122122 23588999999998886653
Q ss_pred CChHhHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHH
Q 008727 152 IGPEICNSLLAVLASDGYIDNALKMFDEMSHR-GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230 (556)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 230 (556)
.-|..+.+.|++-...++++.--.. +-+--...|+.+...++....|++|.+.+...... .
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----------e 826 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----------E 826 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----------H
Confidence 3455666777776666665431110 00111246667777777777777777777655322 1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 008727 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310 (556)
Q Consensus 231 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 310 (556)
..+.++.+..++++-+.+-..+.+ |......+...+...|.-++|.+.+-+. +. | ...+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHH
Confidence 245555555555555555444432 4455556666666667666666554321 11 1 12345556666
Q ss_pred CHHHHHHHHH
Q 008727 311 RICEAKELGE 320 (556)
Q Consensus 311 ~~~~a~~~~~ 320 (556)
++.+|.++-.
T Consensus 893 QW~~avelaq 902 (1189)
T KOG2041|consen 893 QWGEAVELAQ 902 (1189)
T ss_pred HHHHHHHHHH
Confidence 6666665543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.011 Score=45.50 Aligned_cols=91 Identities=14% Similarity=0.118 Sum_probs=40.1
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccC--hhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccC
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFS--TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 240 (556)
++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++......+..+.+......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 34444555555555555555443322 1223333444444455555555555444331111112222222334555566
Q ss_pred CHHHHHHHHHHHh
Q 008727 241 RVEEAFKVLDELR 253 (556)
Q Consensus 241 ~~~~A~~~~~~m~ 253 (556)
+.++|.+.+-...
T Consensus 90 r~~eAl~~~l~~l 102 (120)
T PF12688_consen 90 RPKEALEWLLEAL 102 (120)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666655443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0054 Score=58.14 Aligned_cols=90 Identities=10% Similarity=-0.059 Sum_probs=56.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHH
Q 008727 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417 (556)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 417 (556)
..++..+++++|++.|++.++... .+...+..+..+|.+.|++++|+..++.+.+.... +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 344556667777777766666542 24555566666666677777777777766665443 4556666666666677777
Q ss_pred HHHHHHHHHHHC
Q 008727 418 EAYGVIQEMKRK 429 (556)
Q Consensus 418 ~a~~~~~~m~~~ 429 (556)
+|+..|++..+.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 777777766664
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.11 Score=48.02 Aligned_cols=86 Identities=17% Similarity=0.078 Sum_probs=51.6
Q ss_pred HHhcCChHHHHHHHHHHHhC---CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---HHHHHHHHHhhc
Q 008727 375 LCKRNKSDELVEVYKVLSAN---DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS---FYNSLMEACCRE 448 (556)
Q Consensus 375 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~ 448 (556)
..+.|++..|.+.|.+.... +..|+...|.....+..+.|+.++|+.--+..... |.. .|..-..++...
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLAL 334 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHH
Confidence 45667777777777776653 23344455655556666777777777766666553 222 222233345556
Q ss_pred CChhhHHHHHHHHHHc
Q 008727 449 DLLRPAKKLWDQMFAS 464 (556)
Q Consensus 449 ~~~~~a~~~~~~~~~~ 464 (556)
++|++|.+-++...+.
T Consensus 335 e~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6777777777776654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.015 Score=57.85 Aligned_cols=146 Identities=9% Similarity=-0.011 Sum_probs=98.8
Q ss_pred cCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhc--------CCHHHHHHHHHH
Q 008727 359 KGRVPTLSTLSNLSKNLCKR-----NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS--------GRLREAYGVIQE 425 (556)
Q Consensus 359 ~~~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~ 425 (556)
...+.+...|...+++.... ++...|..+|++..+..+. ....|..+..++... .+...+.+...+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34456667777777764432 2366888888888886543 344455444433322 122344444444
Q ss_pred HHHCC-CCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 008727 426 MKRKG-LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504 (556)
Q Consensus 426 m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 504 (556)
..... ...+...|..+.-.....|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++.... .|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 33321 2234567777766677789999999999999986 478889999999999999999999999999855 566
Q ss_pred HhhHH
Q 008727 505 ATTYT 509 (556)
Q Consensus 505 ~~~~~ 509 (556)
..+|.
T Consensus 486 ~pt~~ 490 (517)
T PRK10153 486 ENTLY 490 (517)
T ss_pred CchHH
Confidence 66654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00085 Score=46.13 Aligned_cols=63 Identities=17% Similarity=0.322 Sum_probs=41.4
Q ss_pred HhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008727 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267 (556)
Q Consensus 200 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 267 (556)
...|++++|++.|+.+... .|.+..++..+..+|.+.|++++|.++++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 3567777777777777765 5556666667777777777777777777777665 4554444433
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.12 Score=47.86 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=78.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
+.+..|.-+...|+...|.++-.+.. .|+..-|..-+.+++..++|++-.++-.. ..++.-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 55666677777888888877766553 47888888899999999998877765432 234577888888999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 008727 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 529 (556)
+.|+..+|..+..++ .+..-+..|.+.|++.+|.+.--
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 999988888887762 22445667788888888776543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.05 Score=47.00 Aligned_cols=57 Identities=2% Similarity=-0.041 Sum_probs=23.8
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCC--CCCHHhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKI--TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 147 (556)
...+...|++.+|.+.|+.+..... +......-.++.++.+.|+++.|...++...+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334445555555555555544310 11122333344444455555555555554443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0057 Score=48.88 Aligned_cols=95 Identities=7% Similarity=0.014 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHH
Q 008727 86 SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165 (556)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 165 (556)
....+...+...|++++|..+|+.+...+ +-+..-|-.|.-.+-..|++++|+..|.......+. |+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 33344445556666666666666665554 344455555555566666666666666666555543 5556666666666
Q ss_pred hcCCHhHHHHHHHHHHh
Q 008727 166 SDGYIDNALKMFDEMSH 182 (556)
Q Consensus 166 ~~g~~~~a~~~~~~m~~ 182 (556)
..|+.+.|.+.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.15 Score=47.21 Aligned_cols=123 Identities=13% Similarity=0.145 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
+.+..+.-+...|+...|.++-.+.. + |+...|...+.+++..+++++..++... +-++..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44445566677888888877765553 3 6888999999999999999988776542 124578889999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 008727 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515 (556)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 515 (556)
+.|+..+|..+..++. +..-+..|.++|++.+|.+.--+.. |...+..+...+
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~ 301 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRC 301 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHC
Confidence 9999999988877621 2456778899999998887755543 455555444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0072 Score=50.54 Aligned_cols=65 Identities=17% Similarity=0.018 Sum_probs=35.7
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC--ChHhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008727 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI--GPEICNSLLAVLASDGYIDNALKMFDEMSHR 183 (556)
Q Consensus 119 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 183 (556)
...+..+...+...|++++|...|+........+ ...+|..+...+...|++++|++.++...+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3344555555556666666666666665442221 1235555666666666666666666665543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.061 Score=49.66 Aligned_cols=271 Identities=15% Similarity=0.051 Sum_probs=144.5
Q ss_pred HHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHH
Q 008727 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT-NDYREFILGLIVERRIC 313 (556)
Q Consensus 235 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~ 313 (556)
.+.+..++.+|++.+....+.... ++.-|..-...+...|+++++.--.+.-.+. +|.. ......-+++...++..
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHH
Confidence 455566677777777776665322 3444444455555556666555444332221 1111 12222333444444444
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHH-HHHHHhcCChHHHHHHHHHH
Q 008727 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR-VPTLSTLSNL-SKNLCKRNKSDELVEVYKVL 391 (556)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~ 391 (556)
+|.+.++.- ..+ ....++..++....... +|...++..+ ..++.-.|++++|..+--.+
T Consensus 135 ~A~~~~~~~---------~~~----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 135 EAEEKLKSK---------QAY----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHHhhhh---------hhh----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 444444310 000 00112222222222211 2333333333 23455667777777776666
Q ss_pred HhCCCCccHhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHhHH-------------HHHHHHHhhcCChhhHHH
Q 008727 392 SANDYFTDMESYNVMVSF--LCTSGRLREAYGVIQEMKRKGLDPDVSFY-------------NSLMEACCREDLLRPAKK 456 (556)
Q Consensus 392 ~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-------------~~ll~~~~~~~~~~~a~~ 456 (556)
.+.. ....+...+++ +.-.++.+.+...|++.+.. .|+...- ..-.+-..+.|++..|.+
T Consensus 196 lkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 196 LKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred Hhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 6543 22234444443 23456777888888777665 3443321 222233457788888888
Q ss_pred HHHHHHHc---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhh-HHHHH--HHHHccCCHHHHHHHHHH
Q 008727 457 LWDQMFAS---GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT-YTSLL--EGLCQETNLQAAFEVFNK 530 (556)
Q Consensus 457 ~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l~--~~~~~~g~~~~a~~~~~~ 530 (556)
.|.+.+.. ...|+...|-....+..+.|+..+|+.--++.... |..- ...+. .++.-.+++++|++-+++
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888764 34556667777777788888888888888888754 3322 22222 334556788888888888
Q ss_pred hhhCCC
Q 008727 531 SVNHDV 536 (556)
Q Consensus 531 m~~~~~ 536 (556)
..+...
T Consensus 347 a~q~~~ 352 (486)
T KOG0550|consen 347 AMQLEK 352 (486)
T ss_pred HHhhcc
Confidence 766543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0057 Score=53.85 Aligned_cols=127 Identities=16% Similarity=0.100 Sum_probs=89.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHH
Q 008727 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419 (556)
Q Consensus 340 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 419 (556)
....+++.+|+..|.+.++... -|..-|..-..+|++.|.++.|++=.+.....+.. ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 4556789999999999888642 25566677778899999999999988888876544 556899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHh-hcCChh---hHHHHHHHHHHcCCCCCH
Q 008727 420 YGVIQEMKRKGLDPDVSFYNSLMEACC-REDLLR---PAKKLWDQMFASGCSGNL 470 (556)
Q Consensus 420 ~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~---~a~~~~~~~~~~~~~~~~ 470 (556)
++.|++.++. .|+..+|-.=+...- +.+... .+..-++.....|..|+.
T Consensus 169 ~~aykKaLel--dP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHhhhcc--CCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 9999988875 777777754444332 223333 333444444444543443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0013 Score=45.27 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHhhhC
Q 008727 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET-NLQAAFEVFNKSVNH 534 (556)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 534 (556)
+.+|..+...+...|++++|+..|++.++... -+...|..+..+|.+.| ++++|++.+++.++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34555555556666666666666666655421 13445555555555665 466666666655543
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.018 Score=44.38 Aligned_cols=88 Identities=24% Similarity=0.237 Sum_probs=42.8
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---H-hhHHHHHHHHH
Q 008727 443 EACCREDLLRPAKKLWDQMFASGCSGN--LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD---A-TTYTSLLEGLC 516 (556)
Q Consensus 443 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~-~~~~~l~~~~~ 516 (556)
.++-..|+.++|+.+|++....|+... ...+-.+.+.+...|++++|..+|++.... .|+ . .....+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHH
Confidence 344455555666666665555554333 223444455555566666666666655543 122 1 11111223445
Q ss_pred ccCCHHHHHHHHHHhh
Q 008727 517 QETNLQAAFEVFNKSV 532 (556)
Q Consensus 517 ~~g~~~~a~~~~~~m~ 532 (556)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5566666665555433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.052 Score=46.94 Aligned_cols=181 Identities=15% Similarity=0.148 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHH
Q 008727 332 DVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP--TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409 (556)
Q Consensus 332 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 409 (556)
..|......+..|++.+|.+.|+.+....... -....-.+..++.+.|+++.|...++...+.-+.-...-+...+.+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 45666667777888888888888887653221 2344556677888889999998888887765433222223333333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-----CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 008727 410 LCTSGRLREAYGVIQEMKRKGLDP-----DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (556)
Q Consensus 410 ~~~~~~~~~a~~~~~~m~~~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 484 (556)
.+......... .....+ -...+..++.-|-...-..+|...+..+.+. .-..- -.+..-|.+.|
T Consensus 87 ~~~~~~~~~~~-------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e-~~ia~~Y~~~~ 155 (203)
T PF13525_consen 87 LSYYKQIPGIL-------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHE-LYIARFYYKRG 155 (203)
T ss_dssp HHHHHHHHHHH--------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHH-HHHHHHHHCTT
T ss_pred HHHHHhCccch-------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHcc
Confidence 22211111110 000000 0123444555555555556665555555431 11111 13566788899
Q ss_pred CHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHccCCHHHHH
Q 008727 485 EIEGALRLFHNMLEKGVAPD----ATTYTSLLEGLCQETNLQAAF 525 (556)
Q Consensus 485 ~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~ 525 (556)
.+..|..-++.+++. -|+ ......++.+|.+.|..+.+.
T Consensus 156 ~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 156 KYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999998876 333 334567778888888877544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.023 Score=50.36 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=48.5
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhc---CChhhHHHHHHHHHHcCCCCCHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE---DLLRPAKKLWDQMFASGCSGNLKTYNI 475 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ 475 (556)
|...|-.|...|...|+.+.|..-|.+..+... ++...+..+..++... .+..++..+|+++.+.+ +-|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 555555555555555555555555555554321 1333333333333221 22345555555555543 334444444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC
Q 008727 476 LISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555555555555555555543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.038 Score=49.08 Aligned_cols=117 Identities=10% Similarity=-0.011 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHH
Q 008727 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV---GEIEGALRLFH 494 (556)
Q Consensus 418 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~ 494 (556)
....-++.-...+.. |...|-.|..+|...|+.+.|..-|.+..+.. .+++..+..+..++..+ ....++.++|+
T Consensus 140 ~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 140 ALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 333334444444433 77888888888888888888888888888763 45666666666665443 34567888888
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 495 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
++...... |..+...|...+...|++.+|...|+.|.+..+.
T Consensus 218 ~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 218 QALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 88866332 5556666667788888888888888888877653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.1 Score=42.63 Aligned_cols=129 Identities=12% Similarity=0.010 Sum_probs=65.2
Q ss_pred CChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHH
Q 008727 152 IGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231 (556)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 231 (556)
|++.-.-.|..++.+.|+..+|...|++....-.--|......+.++....+++..|...++.+-+. +..-.++.....
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~-~pa~r~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY-NPAFRSPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc-CCccCCCCchHH
Confidence 3444455555556666666666666665554333334445555555555556666666666555544 111112223334
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008727 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283 (556)
Q Consensus 232 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 283 (556)
+.+.+...|..++|+..|+..... -|+...-...-..+.++|+.+++..-
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 556666666766676666666654 23332222222234455555544433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.065 Score=46.34 Aligned_cols=145 Identities=12% Similarity=0.090 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH---
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM--- 442 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll--- 442 (556)
.+...++..+...|.+.-....++++.+...+.++...+.+.+.-.+.|+.+.|...|++..+..-+.|..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34455666677778888888888888887766678888888888888888888888888776643333444443333
Q ss_pred --HHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 008727 443 --EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (556)
Q Consensus 443 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 513 (556)
..|.-.+++..|...++++...+ +.|+...|.-.-+..-.|+..+|.+.++.|.+. .|...+-++++-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~ 327 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLF 327 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHH
Confidence 34556677888888888887664 445555555444555578888888888888865 455555554443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.1 Score=48.82 Aligned_cols=171 Identities=14% Similarity=0.076 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCccHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSAND---YFTDMESYNVMVSFLCT---SGRLREAYGVIQEMKRKGLDPDVSFYNS 440 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 440 (556)
+...++-+|-...+++..+++.+.+.... +.-...+--....++.+ .|+.++|++++..+....-.++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33344555777777777777777776641 11122222233444555 6777788887777555555667777777
Q ss_pred HHHHHhh---------cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-H---HHHHHHH---HH-HHHCC---
Q 008727 441 LMEACCR---------EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE-I---EGALRLF---HN-MLEKG--- 500 (556)
Q Consensus 441 ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~---~~A~~~~---~~-m~~~g--- 500 (556)
+.+.|-. ....++|+..|.+.-+. .||..+=-.+...+...|. . .+..++- .. ..++|
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 7766531 12356666666665543 3443322112222222222 1 1222222 11 11233
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCccc
Q 008727 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539 (556)
Q Consensus 501 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 539 (556)
-..|..-+.+++.++.-.|+.++|.+..++|.+..+..|
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 233555667778888888888889888888887765444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.02 Score=49.32 Aligned_cols=134 Identities=9% Similarity=-0.009 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCC---CCchhhHHHH
Q 008727 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM---INGSVIAVLI 232 (556)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~l 232 (556)
+-+.++.++.-.|.+.-...++.+.++.+.+-+......|.+.-.+.||.+.|...|+...+..+.. .....+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3344444444455555555555555554444444444444444455555555555555444321110 0001111122
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 233 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
...|.-++++.+|...|.+.....-. |....|.=.-+..-.|+..+|++.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344455555666666555544211 2222332222223345566666666665553
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0021 Score=44.10 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=24.2
Q ss_pred cCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008727 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429 (556)
Q Consensus 378 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 429 (556)
.|++++|.++|+.+....+. +...+..+..+|.+.|++++|.++++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555554444333 4444444555555555555555555554443
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0031 Score=42.76 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=31.0
Q ss_pred HHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 008727 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254 (556)
Q Consensus 198 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 254 (556)
.+...|++++|++.|+.+.+. .|.+...+..+...+...|++++|...|++..+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQ---DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCC---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455556666666666666554 355555555566666666666666666665544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0025 Score=43.28 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=27.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCC
Q 008727 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 535 (556)
..+.+.|++++|.+.|++.++... -+...+..+..++.+.|++++|..+|+++++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 344455555555555555554421 134444444555555555555555555554433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.019 Score=46.73 Aligned_cols=69 Identities=22% Similarity=0.333 Sum_probs=36.6
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHhh
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE-----KGVAPDATT 507 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 507 (556)
...++..+...|++++|.++.+.+.... +-|...|..+|.+|...|+..+|.+.|+++.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444455556666666666666666553 44555666666666666666666666666543 266665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.23 Score=48.78 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
+...+...+.+...+..|-++|..|-+. .++++.....+++.+|..+-+..-+. .||+ |---.+-++
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dV--y~pyaqwLA 815 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDV--YMPYAQWLA 815 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccc--cchHHHHhh
Confidence 3333444445556666777777766532 34556666777777777776655442 3332 223334444
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
...++++|.+ +|.+.|+..+|..+++++..
T Consensus 816 E~DrFeEAqk----------------------AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQK----------------------AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHH----------------------HHHHhcchHHHHHHHHHhhh
Confidence 5555555444 45556666666666666653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.31 Score=45.75 Aligned_cols=84 Identities=13% Similarity=0.200 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHH
Q 008727 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160 (556)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (556)
+.|..+|-.+++.+...+..++.++++++|..- .+.-+.+|..-+.+=...+++.....+|.+...... +...|..-
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHH
Confidence 357888999999999999999999999988764 345566777777777777888889999988877633 56777776
Q ss_pred HHHHHhc
Q 008727 161 LAVLASD 167 (556)
Q Consensus 161 i~~~~~~ 167 (556)
+....+.
T Consensus 116 l~YIRr~ 122 (660)
T COG5107 116 LEYIRRV 122 (660)
T ss_pred HHHHHhh
Confidence 6655544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.019 Score=51.48 Aligned_cols=100 Identities=10% Similarity=-0.022 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccC--hhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 008727 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS--TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233 (556)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 233 (556)
.|+..+..+.+.|++++|...|+.+.+...... ...+-.+...|...|++++|...|+.+.......+.....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 445544444555666666666666665431110 124444555566666666666666666654333333333444445
Q ss_pred HHHhccCCHHHHHHHHHHHhhC
Q 008727 234 HGFCKGKRVEEAFKVLDELRIR 255 (556)
Q Consensus 234 ~~~~~~~~~~~A~~~~~~m~~~ 255 (556)
..+...|+.++|.+.|+.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5555566666666666665554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0047 Score=42.49 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=35.9
Q ss_pred HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHH
Q 008727 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG-EIEGALRLFHNMLE 498 (556)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 498 (556)
..+|..+...+...|++++|+..|++..+.. +.+...|..+..+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555555666666666666666665543 334555555556666666 46666666655543
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.025 Score=50.68 Aligned_cols=97 Identities=12% Similarity=0.116 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhhcCChhhHHHHHHHHHHcC--CCCCHHHHHHHHH
Q 008727 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD--VSFYNSLMEACCREDLLRPAKKLWDQMFASG--CSGNLKTYNILIS 478 (556)
Q Consensus 403 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~ 478 (556)
|...+..+.+.|++++|...|+.+.+..+... ...+-.+..+|...|++++|...|+.+.+.- -+.....+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333444555555555555555422110 1244445555555555555555555555431 0111223333344
Q ss_pred HHHccCCHHHHHHHHHHHHHC
Q 008727 479 KFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.+...|+.++|.++|++.++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.37 Score=47.41 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=56.0
Q ss_pred CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh-------
Q 008727 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT------- 506 (556)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------- 506 (556)
+..+...+...+.+...+.-|-++|..|-+. ..+++.....++|.+|..+-++..+ +.||..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHh
Confidence 3444555555555666666777777766542 2455666677777777777666553 233322
Q ss_pred ----hHHHHHHHHHccCCHHHHHHHHHHhhhC
Q 008727 507 ----TYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (556)
Q Consensus 507 ----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 534 (556)
-|...-.+|.++|+-.||.++++++...
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2344456788889999999999887543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.052 Score=44.10 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhh-----hCCCcccHHHHH
Q 008727 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV-----NHDVMLARSILS 544 (556)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~~~~ 544 (556)
.+...++..+...|++++|.++.+.+.... +-|...|..++.+|...|+..+|.++|+++. +.|+.|+..+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 345667788889999999999999999764 3378899999999999999999999999873 468888877654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.33 Score=39.80 Aligned_cols=134 Identities=10% Similarity=0.009 Sum_probs=96.4
Q ss_pred CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCc-cChhhHH
Q 008727 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE-FSTIGFG 193 (556)
Q Consensus 115 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~ 193 (556)
..|+..-...|..++.+.|+..+|...|++....-..-|....-.+.++....+++..|...++.+-+.+.. -+..+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 357777778888899999999999999999877656668888888888888899999999999988775411 1233445
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 008727 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252 (556)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 252 (556)
.+...+...|+.+.|+.-|+..... -..+..... ....+.+.|+.+++..-+.++
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~-ypg~~ar~~---Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY-YPGPQARIY---YAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh-CCCHHHHHH---HHHHHHHhcchhHHHHHHHHH
Confidence 5667788889999999999988876 222221222 334566777777665544444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.038 Score=43.04 Aligned_cols=98 Identities=21% Similarity=0.173 Sum_probs=63.5
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (556)
|..++..+|.++++.|+.+....+++..- |+.++... ..+. .-....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34567777777777777777777765443 22221100 0000 1123346788888888888
Q ss_pred HHHccCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHH
Q 008727 479 KFSEVGEIEGALRLFHNMLEK-GVAPDATTYTSLLEGLC 516 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~ 516 (556)
+|+..|++..|+++.+...+. ++..+..+|..|+.-+.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888888888888888887665 67777888888886543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.13 Score=47.45 Aligned_cols=97 Identities=14% Similarity=-0.046 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH----hCCCC-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCH
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLS----ANDYF-TDMESYNVMVSFLCTSGRLREAYGVIQEMKR----KG-LDPDV 435 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~-~~p~~ 435 (556)
..+..+.+++.-.|+++.|.+.|+... +.|-. ....+.-++...|.-..++++|+.++.+-.. .+ ..-..
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 344555566666677777776665532 22211 1223455566666666666777666654221 10 01123
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHH
Q 008727 436 SFYNSLMEACCREDLLRPAKKLWDQMF 462 (556)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 462 (556)
..+-+|..+|...|..++|+.+.+.-.
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455666677777777777666655443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0066 Score=43.01 Aligned_cols=62 Identities=29% Similarity=0.481 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC----CC-CCC-HhhHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 471 KTYNILISKFSEVGEIEGALRLFHNMLEK----GV-APD-ATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
.+|+.+...|...|++++|++.|++..+. |- .|+ ..++..+...|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555566666666666666666665532 11 111 3445556666666666666666666553
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.014 Score=40.66 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=29.2
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
.|.+.+++++|.++++++...+.. +...|......+.+.|++++|.+.|++..+.++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 445555555555555555544211 334444444555555555555555555555444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.7 Score=42.72 Aligned_cols=281 Identities=12% Similarity=0.039 Sum_probs=135.7
Q ss_pred CCChHHHHHHHHHHHhCCCCCChHhHHHHHHHH--HhcCCHhHHHHHHHHHHhCCCccChh--hHHHHHHHHHhhCcHHH
Q 008727 132 GKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL--ASDGYIDNALKMFDEMSHRGVEFSTI--GFGVFIWKFCENAKLGQ 207 (556)
Q Consensus 132 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~ 207 (556)
.|+-..|.++-.+..+. +..|....-.|+.+- .-.|+++.|.+-|+.|... |... -...|.-..-+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 34555555554443221 111333333333332 2347777777777777652 1111 12222223345677777
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCC-CCCCHH--HHHHHHHHHHh---cCCHHHHH
Q 008727 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE-CKPDFI--AYRIVAEEFKL---MGSVFERE 281 (556)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~--~~~~ll~~~~~---~~~~~~a~ 281 (556)
|.+.-+..... .|.-...+...+...|..|+|+.|+++.+.-+... +.++.. .-..|+.+-.. .-+...|.
T Consensus 173 Ar~yAe~Aa~~---Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 173 ARHYAERAAEK---APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHhh---ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 77777766654 55556677778888888888888888887765432 333432 12223222111 11233333
Q ss_pred HHHHHHHhcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 008727 282 VVLKKKRKLGVAPRTND-YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG 360 (556)
Q Consensus 282 ~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~ 360 (556)
..-.+.. .+.||..- ......++.+.|+..++-.+++.+-+..+.|+...
T Consensus 250 ~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--------------------------- 300 (531)
T COG3898 250 DDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--------------------------- 300 (531)
T ss_pred HHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH---------------------------
Confidence 3322222 23333321 12223455666666666666665555544333221
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHH---HHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 008727 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKV---LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437 (556)
Q Consensus 361 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 437 (556)
+..+.+.|+. +..-++. +...... +..+--.+.++-...|++..|..--+..... .|....
T Consensus 301 -----------lY~~ar~gdt--a~dRlkRa~~L~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~ 364 (531)
T COG3898 301 -----------LYVRARSGDT--ALDRLKRAKKLESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESA 364 (531)
T ss_pred -----------HHHHhcCCCc--HHHHHHHHHHHHhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhH
Confidence 1112233332 1111111 1111111 3344445555555666666666555554443 456666
Q ss_pred HHHHHHHHhh-cCChhhHHHHHHHHHHc
Q 008727 438 YNSLMEACCR-EDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 438 ~~~ll~~~~~-~~~~~~a~~~~~~~~~~ 464 (556)
|..|...-.. .||-.++...+.+..+.
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 6665555433 37777777777776654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.038 Score=43.04 Aligned_cols=97 Identities=14% Similarity=0.049 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 008727 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443 (556)
Q Consensus 364 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 443 (556)
|..++..+|.++++.|+++....+++..=.-++ +.. ...+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~--~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDV--NGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC--CCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 467889999999999999999998876532221 110 00000 1122345677777777777
Q ss_pred HHhhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 008727 444 ACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKF 480 (556)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~ 480 (556)
+|+..+++..|+++.+...+. +++.+..+|..|+.-.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 777777777777777776654 5666667777766543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.42 E-value=1.2 Score=44.80 Aligned_cols=140 Identities=13% Similarity=0.128 Sum_probs=71.9
Q ss_pred hCCCCCCHHhHHH-----HHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH--hHHHHHHHHHHhCC
Q 008727 112 VNKITLDSSVYRF-----IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI--DNALKMFDEMSHRG 184 (556)
Q Consensus 112 ~~~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~ 184 (556)
..|++.+..-|.. ++..+...+.+..|+++-..+...... ...+|.....-+.+..+. +++.+..++=....
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4466666665543 355566677777777777766433222 145566666666555321 22222222211111
Q ss_pred CccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCC---chhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 008727 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN---GSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254 (556)
Q Consensus 185 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 254 (556)
. -+...|..+.......|+.+.|..+++.=... +...+ ...-+..-+.-..+.|+.+....++-.+..
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~-~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRS-GEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCc-cchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 1 24456666666666777777777776644332 11111 011122344455666676666666665554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.86 Score=42.82 Aligned_cols=100 Identities=8% Similarity=0.009 Sum_probs=63.2
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHHHhCC---CCCChHhHHHHHHHHHh---cCCHhHHHHHHHHHHhCCCccChhh
Q 008727 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC---EDIGPEICNSLLAVLAS---DGYIDNALKMFDEMSHRGVEFSTIG 191 (556)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 191 (556)
+..+...++-+|....+++..+++++.+.... +.-+..+--...-++.+ .|+.++|++++..+......++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34445566667888889999999999887642 11122233344445556 7889999999888666556677788
Q ss_pred HHHHHHHHHhh---------CcHHHHHHHHHHHHh
Q 008727 192 FGVFIWKFCEN---------AKLGQVLSMLDEVRK 217 (556)
Q Consensus 192 ~~~li~~~~~~---------g~~~~a~~~~~~~~~ 217 (556)
|..+...|-.. ..+++|+..|.+.-+
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 87776665422 234555555554443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.022 Score=39.60 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=32.9
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 443 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
..|.+.+++++|.++++.+.+.+ +.+...|.....++.+.|++++|.+.|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555666666666666666543 334555555566666666666666666666644
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.78 Score=41.95 Aligned_cols=101 Identities=11% Similarity=-0.031 Sum_probs=49.3
Q ss_pred hHHHHHHHHHhhCcHH---HHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008727 191 GFGVFIWKFCENAKLG---QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267 (556)
Q Consensus 191 ~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 267 (556)
++..++.+|...+..+ +|.++++.+... .++...++..-+..+.+.++.+++.+++.+|...- .-....+...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e---~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE---YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh---CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 3444555555554443 344455555443 33334444444555555777777777777776652 1122334444
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHhcCCCCCh
Q 008727 268 AEEF---KLMGSVFEREVVLKKKRKLGVAPRT 296 (556)
Q Consensus 268 l~~~---~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (556)
+..+ .. .....+...+..+....+.|..
T Consensus 162 l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 4433 22 2234455555555444444433
|
It is also involved in sporulation []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.068 Score=49.30 Aligned_cols=132 Identities=11% Similarity=0.023 Sum_probs=72.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHhHHHHHHHHHhhcCChhhHHHHHHHHHH----cC-CCCCHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMK----RKGLD-PDVSFYNSLMEACCREDLLRPAKKLWDQMFA----SG-CSGNLK 471 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~ 471 (556)
.|..+...|.-.|+++.|+...+.-. +.|-+ .....+..+.+++.-.|+++.|.+.|+.... .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34445555555566666665544321 12211 1234566667777777777777776665432 22 112234
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 472 TYNILISKFSEVGEIEGALRLFHNMLEK-----GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
+.-+|...|.-..++++|+.++.+-+.. ...-....+.+|..+|...|..++|+.+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4456666666667777777766553321 1111344566677777777777777766665443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.98 Score=42.73 Aligned_cols=205 Identities=13% Similarity=0.099 Sum_probs=119.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHH-----HHHHHHHHhcC-----ChhHHHHHHHHHHHcCCCCCHHH
Q 008727 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV-----LNALIGSVSSI-----DPRSAIVFFNFMIEKGRVPTLST 367 (556)
Q Consensus 298 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~ 367 (556)
+|..++...++.++...|.+.+..+.-..+.....- -..+.+..+.. +..+-+.+++.....++. ....
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQL 378 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQL 378 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHH
Confidence 677777788888888888877776654433322111 11111222221 233444555555444332 1122
Q ss_pred HHHHH---HHHHhcCC-hHHHHHHHHHHHhCCCCccHhhHHHHH----HHHHhc---CCHHHHHHHHHHHHHCCCCCCH-
Q 008727 368 LSNLS---KNLCKRNK-SDELVEVYKVLSANDYFTDMESYNVMV----SFLCTS---GRLREAYGVIQEMKRKGLDPDV- 435 (556)
Q Consensus 368 ~~~ll---~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~~---~~~~~a~~~~~~m~~~~~~p~~- 435 (556)
...++ .-+-+.|. -++|.++++.+.+-... |...-|.+. ++|.+. ..+..-+.+-+-+.+.|+.|-.
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i 457 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITI 457 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccc
Confidence 22233 22344455 88899999888764322 444444433 233322 2333444444455667776643
Q ss_pred ---hHHHHHHHH--HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 008727 436 ---SFYNSLMEA--CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510 (556)
Q Consensus 436 ---~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 510 (556)
..-|.|..+ +...|++.++.-.-.-+.+ +.|++.+|..+.-+.....++++|.+++..+ +|+..++++
T Consensus 458 ~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 458 SEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred cHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 233444433 4567899988877666666 6899999999999999999999999999865 567777665
Q ss_pred H
Q 008727 511 L 511 (556)
Q Consensus 511 l 511 (556)
-
T Consensus 531 k 531 (549)
T PF07079_consen 531 K 531 (549)
T ss_pred H
Confidence 3
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.53 Score=41.92 Aligned_cols=144 Identities=16% Similarity=0.143 Sum_probs=92.4
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcH
Q 008727 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205 (556)
Q Consensus 126 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 205 (556)
.......|++.+|..+|+........ +..+--.+..+|...|+.+.|..++..+...--.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34556788888888888888776444 56677788888889999999999988876643222222222233444444444
Q ss_pred HHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcC
Q 008727 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR--ECKPDFIAYRIVAEEFKLMG 275 (556)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~ 275 (556)
.+...+-..... .|++......+...+...|+.++|.+.+-.+.++ |.. |...-..++..+.-.|
T Consensus 220 ~~~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 444444444433 4666777777888888889999888877776554 222 4444555555555555
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.37 Score=39.02 Aligned_cols=88 Identities=15% Similarity=0.120 Sum_probs=63.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 008727 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489 (556)
Q Consensus 410 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 489 (556)
+...|++++|..+|.-+...+.. +..-|..|..+|-..+++++|...|......+ .-|+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 45678888888888877765543 55556677777777888888888888776654 34444455567788888888888
Q ss_pred HHHHHHHHHC
Q 008727 490 LRLFHNMLEK 499 (556)
Q Consensus 490 ~~~~~~m~~~ 499 (556)
...|...++.
T Consensus 125 ~~~f~~a~~~ 134 (165)
T PRK15331 125 RQCFELVNER 134 (165)
T ss_pred HHHHHHHHhC
Confidence 8888888763
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.059 Score=47.06 Aligned_cols=104 Identities=16% Similarity=0.291 Sum_probs=63.4
Q ss_pred ccHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHH
Q 008727 398 TDMESYNVMVSFLCTS-----GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472 (556)
Q Consensus 398 ~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 472 (556)
-|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+..- .|.- .
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-H
Confidence 3667777777776543 4566677777888888888888888888887754321 1111 1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 008727 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (556)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 520 (556)
+....-.|-+ +-+=+++++++|...|+.||..+-..++.++.+.|-
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111211 123356677777777777777777777777766664
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.45 Score=40.92 Aligned_cols=88 Identities=10% Similarity=0.093 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
-...|..-..+|...+++++|..-+.+..+ +...+...|.+ .+.++.|..+.+++.+. +--+..|+--..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASE 99 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 445666777777778888888776666553 11223322222 23445555555555443 112335566666
Q ss_pred HHHhcCCHhHHHHHHHHH
Q 008727 163 VLASDGYIDNALKMFDEM 180 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m 180 (556)
.|..+|.++.|-..+++.
T Consensus 100 lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHhCCcchHHHHHHHH
Confidence 677777776666665554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.8 Score=44.38 Aligned_cols=141 Identities=9% Similarity=0.064 Sum_probs=85.0
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhH
Q 008727 93 SLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDN 172 (556)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 172 (556)
.+.+.|++++|.+.|-+-+.. +.| ..+|.-|....+..+-...++.+.+.|.. +...-..|+.+|.+.++.++
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence 344678888887766554332 122 23455566666677777777777777766 66777788888888888887
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 008727 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252 (556)
Q Consensus 173 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 252 (556)
-.++.+... .|.. ..-....+..+.+.+-.++|..+-...... ..+...+ +-..|++++|++.+..+
T Consensus 450 L~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~h-------e~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 450 LTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKKH-------EWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhccC-------HHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 777666554 2321 112334555566666666666555444322 2222222 33457788888887776
Q ss_pred h
Q 008727 253 R 253 (556)
Q Consensus 253 ~ 253 (556)
.
T Consensus 517 p 517 (933)
T KOG2114|consen 517 P 517 (933)
T ss_pred C
Confidence 4
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.77 Score=40.14 Aligned_cols=66 Identities=8% Similarity=0.029 Sum_probs=38.0
Q ss_pred CHHHHHHHhhhhhccChhHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 008727 48 SPSLVARVINPYLLTHHSLALGFFNWASQQPNFTH-SPLSYHSILKSLSLSRQINAIDSVLKQVKVN 113 (556)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 113 (556)
...+..+.+..+..+++..|.+-|+.+..+..+.| ...+--.++.++-+.++++.|+..+++....
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 44455666666666666666666666655544333 2333334445555666666666666666554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.54 Score=38.10 Aligned_cols=89 Identities=10% Similarity=-0.077 Sum_probs=74.4
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHH
Q 008727 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523 (556)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 523 (556)
-+-..|++++|..+|.-+.-.+ ..+..-|..|..++-..+++++|...|......+.. |+..+-....+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 3457899999999999998765 456777888889999999999999999998766542 55556678889999999999
Q ss_pred HHHHHHHhhhC
Q 008727 524 AFEVFNKSVNH 534 (556)
Q Consensus 524 a~~~~~~m~~~ 534 (556)
|...|+..+++
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 99999988773
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.86 Score=39.86 Aligned_cols=83 Identities=11% Similarity=0.027 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHH
Q 008727 329 IDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR--VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406 (556)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 406 (556)
|-...|+..+..+..|++++|.+.|+.+..... +-...+.-.++.++-+.++++.|...+++.....+.....-|-.-
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 445567888888888999999999998876542 223556666777888899999999999887775443333345555
Q ss_pred HHHHH
Q 008727 407 VSFLC 411 (556)
Q Consensus 407 i~~~~ 411 (556)
|.+++
T Consensus 113 lkgLs 117 (254)
T COG4105 113 LKGLS 117 (254)
T ss_pred HHHHH
Confidence 55554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.46 Score=38.13 Aligned_cols=124 Identities=14% Similarity=0.185 Sum_probs=61.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcC
Q 008727 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449 (556)
Q Consensus 370 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 449 (556)
.++..+...+.......+++.+...+. .+...++.++..|++.+ ..+.++.++. .++......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 444455555666666666666665543 35556666666666543 2333333331 112333344555666666
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 008727 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV-GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (556)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 516 (556)
.++++..++.++.. |...+..+... ++++.|.+.+.+- -+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 66666655555432 12222333333 5555555555441 14445555554443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.02 Score=40.52 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 437 FYNSLMEACCREDLLRPAKKLWDQMFAS----GC-SGN-LKTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+..+|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555566666666666665555432 10 111 3455566666666666666666666654
|
... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.01 E-value=1.2 Score=40.72 Aligned_cols=196 Identities=14% Similarity=0.108 Sum_probs=106.9
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHHc--------CCCCC-----HHHHHHHHHHHHhcCChH---HHHHHHHHHHhCCC
Q 008727 334 LNALIGSVSSI-DPRSAIVFFNFMIEK--------GRVPT-----LSTLSNLSKNLCKRNKSD---ELVEVYKVLSANDY 396 (556)
Q Consensus 334 ~~~l~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~-----~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~ 396 (556)
||.....+.++ +++.|...+++..+. ...|+ ..++..++.+|...+..+ +|.++++.+.....
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~ 118 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG 118 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC
Confidence 44445555555 555555554443221 12233 245666778888777655 45556666655433
Q ss_pred CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH---hhcCChhhHHHHHHHHHHcCCCCCHH-H
Q 008727 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC---CREDLLRPAKKLWDQMFASGCSGNLK-T 472 (556)
Q Consensus 397 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 472 (556)
. .+.++..-+..+.+.++.+++.+.+.+|...-.- ....+..+++.+ .. .....|...++.+....+.|... .
T Consensus 119 ~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~ 195 (278)
T PF08631_consen 119 N-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQW 195 (278)
T ss_pred C-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHH
Confidence 2 3445555667777788999999999999986321 234455555544 33 33456677777766554555553 1
Q ss_pred HHH-HHH---HHHccCC------HHHHHHHHHHHHHC-CCCCCHhhHHHH-------HHHHHccCCHHHHHHHHHHhh
Q 008727 473 YNI-LIS---KFSEVGE------IEGALRLFHNMLEK-GVAPDATTYTSL-------LEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 473 ~~~-li~---~~~~~g~------~~~A~~~~~~m~~~-g~~p~~~~~~~l-------~~~~~~~g~~~~a~~~~~~m~ 532 (556)
... ++. ...+.++ .+...++++...+. +.+.+..+-.++ ...+.+.+++++|.++++-..
T Consensus 196 ~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 196 LEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 111 111 1122222 44454555533322 333344443222 234567899999999998543
|
It is also involved in sporulation []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.61 Score=41.57 Aligned_cols=149 Identities=9% Similarity=0.060 Sum_probs=102.3
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 170 (556)
.......+++..|..+|....... +-+......+.+.|...|+.+.|..++..+...-..........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345567899999999999988865 4456777888999999999999999999986543222222223345556666666
Q ss_pred hHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHH
Q 008727 171 DNALKMFDEMSHRGVEF-STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244 (556)
Q Consensus 171 ~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 244 (556)
.+...+-.+.-.. | |...-..+...+...|+.+.|.+.+-.+.++ .....+......++..+.-.|.-+.
T Consensus 220 ~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~-d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRR-DRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cccccCcHHHHHHHHHHHhcCCCCH
Confidence 5555555555442 3 5555566777888999999999888777776 4444445555666666665554333
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.6 Score=41.22 Aligned_cols=416 Identities=9% Similarity=0.049 Sum_probs=222.2
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008727 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184 (556)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 184 (556)
++=+.+++. |.|...|-.|+.-+...+..++..++++++..- .+.-..+|..-|.+-...+++.....+|.+.....
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 333444443 678899999999999999999999999999653 33355689888888888899999999999988865
Q ss_pred CccChhhHHHHHHHHHhhCc-------HHHHHHHHHHHHhccCCCCCchhhHHHHHHHH---hccCCH------HHHHHH
Q 008727 185 VEFSTIGFGVFIWKFCENAK-------LGQVLSMLDEVRKRENSMINGSVIAVLIIHGF---CKGKRV------EEAFKV 248 (556)
Q Consensus 185 ~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~---~~~~~~------~~A~~~ 248 (556)
. +...|..-+ .|.+.-+ -....+.|+-...-.+..|.....|+..+..+ -..|.| |...+.
T Consensus 107 l--~ldLW~lYl-~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 107 L--NLDLWMLYL-EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred c--cHhHHHHHH-HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 4 345555444 3443311 11223334444333355666666666544332 223334 444555
Q ss_pred HHHHhhCCCCCCHHHHH------HHHHHHH-------hcCCHHHHHHHHHHHHh--cCCCCCh----hhHHH--------
Q 008727 249 LDELRIRECKPDFIAYR------IVAEEFK-------LMGSVFEREVVLKKKRK--LGVAPRT----NDYRE-------- 301 (556)
Q Consensus 249 ~~~m~~~~~~p~~~~~~------~ll~~~~-------~~~~~~~a~~~~~~~~~--~~~~~~~----~~~~~-------- 301 (556)
+.++....+.-=...|+ .=+.-.. ..--+..|.+.+++... .|...-. .+++.
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 55555432110001111 1111000 00112344455554433 2332111 11111
Q ss_pred ---HHHHHHh-----cCC-H-HHHHHHHHHHHcCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 008727 302 ---FILGLIV-----ERR-I-CEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370 (556)
Q Consensus 302 ---ll~~~~~-----~~~-~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 370 (556)
+|+--.. .|+ . ....-+++++... +...+.+|--.... ...+|-+.|+.....-... .|+ .-..
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~~~ 338 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LTMF 338 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hhee
Confidence 1110000 000 0 0011111111111 01111111111111 1234555555554332211 122 1111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh--------------CCC---------------CccHhhHHHHHHHHHhcCCHHHHHH
Q 008727 371 LSKNLCKRNKSDELVEVYKVLSA--------------NDY---------------FTDMESYNVMVSFLCTSGRLREAYG 421 (556)
Q Consensus 371 ll~~~~~~g~~~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~li~~~~~~~~~~~a~~ 421 (556)
+-..|.-.++-+.+...|+...+ .+. ..-..+|...+....+..-++.|..
T Consensus 339 lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~ 418 (660)
T COG5107 339 LSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARK 418 (660)
T ss_pred HHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHH
Confidence 11222222232222222222110 011 0122356667777777778889999
Q ss_pred HHHHHHHCC-CCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 422 VIQEMKRKG-LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY-NILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 422 ~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+|-+..+.| +.+++..+++++..++ .|+...|..+|+.-... -||...| +-.+.-+...++-+.|..+|+..+.+
T Consensus 419 ~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 419 LFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred HHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 999998888 5678888888888765 57888898988876554 3454443 45566777888989999999976654
Q ss_pred CCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHhhhCC
Q 008727 500 GVAPD--ATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 500 g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 535 (556)
+.-+ ...|..+|..=..-|+...+..+-++|.+.=
T Consensus 496 -~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 496 -LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred -HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 2223 5678888888888999998888888886643
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.13 Score=45.17 Aligned_cols=99 Identities=11% Similarity=0.093 Sum_probs=65.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCc--cChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 008727 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVE--FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233 (556)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 233 (556)
.|+.-+..+ +.|++..|...|...++.... -....+--|...+...|+++.|...|..+.+..+..+..+....-|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 566665544 556688888888777765311 11223334667777777777777777777776565565556666677
Q ss_pred HHHhccCCHHHHHHHHHHHhhC
Q 008727 234 HGFCKGKRVEEAFKVLDELRIR 255 (556)
Q Consensus 234 ~~~~~~~~~~~A~~~~~~m~~~ 255 (556)
....+.|+.++|...|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777777777777777765
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.63 Score=35.83 Aligned_cols=63 Identities=13% Similarity=0.228 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 501 (556)
....+......|.-+.-.+++.++.+.+ .+++...-.+..+|.+.|+..++.++++++.+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444455555555555555555554432 45555555555555555555555555555555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.75 E-value=2.6 Score=42.63 Aligned_cols=110 Identities=14% Similarity=0.112 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008727 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480 (556)
Q Consensus 401 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 480 (556)
.+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++-+... .+.-|.-.+.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 356666777788899999988877765 4788899999999999999887766655443 255577788999
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 008727 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529 (556)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 529 (556)
.+.|+.++|.+++.+.- |.. -...+|.+.|++.+|.++--
T Consensus 755 ~~~~n~~EA~KYiprv~--~l~-------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVG--GLQ-------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhccC--ChH-------HHHHHHHHhccHHHHHHHHH
Confidence 99999999999887663 111 56778888898888877654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.84 Score=36.63 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=56.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 008727 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381 (556)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 381 (556)
++..+...+.......+++.+...+. .+....|.++..+..-+..+.++.+.. ..+......+++.|.+.+.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDPQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCHHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 34444444445555555555544432 344445555555444444444444432 12233344455555566666
Q ss_pred HHHHHHHHHHHhCCCCccHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTS-GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 382 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
+++..++..+.. +...+..+... ++++.|.+++.+- -+...|..++..+.
T Consensus 86 ~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666555554422 12222222333 5556665555531 14445555555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.16 Score=48.35 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=55.0
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV----SFYNSLMEACCREDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (556)
+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5668899999999999999999999998886 4553 35888999999999999999999999875
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.34 Score=38.22 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=50.3
Q ss_pred HHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008727 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273 (556)
Q Consensus 198 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 273 (556)
...+.|++++|.+.|+.+..+....+-...+...++.+|.+.+++++|...+++..+....---..|...+.+++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 4456777888888888877775555555566667888888888888888888887776432222445555555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.77 Score=45.47 Aligned_cols=162 Identities=16% Similarity=0.087 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC-CCCcc-----HhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhH
Q 008727 368 LSNLSKNLCKRNKSDELVEVYKVLSAN-DYFTD-----MESYNVMVSFLCT----SGRLREAYGVIQEMKRKGLDPDVSF 437 (556)
Q Consensus 368 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~-----~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~ 437 (556)
+..+++...=.|+-+.+.+.+....+. ++.-. .-.|+.++..++. ....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344455555567777777777665542 22211 1134444444443 35678899999998886 566655
Q ss_pred HHH-HHHHHhhcCChhhHHHHHHHHHHcCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 008727 438 YNS-LMEACCREDLLRPAKKLWDQMFASGC---SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (556)
Q Consensus 438 ~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 513 (556)
|.. -.+.+...|++++|.+.|++...... +.....+--+...+...+++++|.+.|.++.+..-- +..+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 543 33456678999999999997664211 122344556677788899999999999999875321 3444444444
Q ss_pred H-HHccCCH-------HHHHHHHHHhh
Q 008727 514 G-LCQETNL-------QAAFEVFNKSV 532 (556)
Q Consensus 514 ~-~~~~g~~-------~~a~~~~~~m~ 532 (556)
+ +...|+. ++|.++|++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 3567777 88888888763
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.57 E-value=3.3 Score=42.52 Aligned_cols=178 Identities=10% Similarity=0.063 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHH----HHcCCChHHHHHHHHHHHhCCCCCChHhHHHH
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPS----LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (556)
.....-|..+.+...++-|..+-+ ..+ .+......+... +.+.|++++|..-|-+-... ++| ..+
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk---~~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~V 403 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAK---SQH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEV 403 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHH---hcC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHH
Confidence 345566777888888888876654 333 344444444444 45789999999887765432 122 345
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccC
Q 008727 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240 (556)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 240 (556)
+.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++..++.+... . |...-+ ....+..+.+.+
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd---~e~al~Ilr~sn 477 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFD---VETALEILRKSN 477 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeee---HHHHHHHHHHhC
Confidence 66666677777777888888888864 44555678889999999998888877655 2 222111 233456666677
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287 (556)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 287 (556)
-.++|..+-..... +......+ +-..+++++|++.+..+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 77777666544332 23333333 34568888998887654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.14 Score=48.71 Aligned_cols=97 Identities=10% Similarity=0.001 Sum_probs=71.7
Q ss_pred CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 008727 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL----KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509 (556)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 509 (556)
+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.+++.++.+ ...|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels----n~~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY----NLKFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----chhHH
Confidence 5678999999999999999999999999885 5663 358999999999999999999999999752 12232
Q ss_pred HHHH--HHHccCCHHHHHHHHHHhhhCCC
Q 008727 510 SLLE--GLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 510 ~l~~--~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
.+.. .+....+.++..++++...+-|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 2211 11222344567777777766664
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.53 Score=37.17 Aligned_cols=84 Identities=10% Similarity=0.017 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHH
Q 008727 330 DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV--PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407 (556)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 407 (556)
....|+.....+.+|++++|.+.|+.+...-.. -....-..++.+|.+.++++.|...+++..+.++.-...-|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 345567777778888888888888888765322 134555667788888888888888888888876654444566666
Q ss_pred HHHHhc
Q 008727 408 SFLCTS 413 (556)
Q Consensus 408 ~~~~~~ 413 (556)
.+++..
T Consensus 90 ~gL~~~ 95 (142)
T PF13512_consen 90 RGLSYY 95 (142)
T ss_pred HHHHHH
Confidence 665543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.36 Score=42.38 Aligned_cols=117 Identities=18% Similarity=0.174 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChH
Q 008727 81 THSPLSYHSILKSLSL-----SRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155 (556)
Q Consensus 81 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 155 (556)
.-|-.+|-..+..+.. .+.++-.-..++.|.+-|+.-|..+|+.|++.+-+..-.. ..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP-----------------~n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP-----------------QN 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc-----------------HH
Confidence 4466677666666643 3455666666788888888888888888887765432211 11
Q ss_pred hHHHHHHHHHhc-CCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcH-HHHHHHHHHHHh
Q 008727 156 ICNSLLAVLASD-GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL-GQVLSMLDEVRK 217 (556)
Q Consensus 156 ~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~ 217 (556)
++- ..+... .+-+-+++++++|...|+.||..+-..|++++.+.+-. .+..++.-.|.+
T Consensus 127 vfQ---~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 127 VFQ---KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHH---HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 111 111111 22344677788888888888888877788777766543 344445555544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.4 Score=36.13 Aligned_cols=133 Identities=12% Similarity=0.044 Sum_probs=68.7
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccC
Q 008727 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220 (556)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 220 (556)
.+..+...+++|+...+..+++.+.+.|++... ..+.+.++-+|.......+-.+. +....+.++=-.|..+-
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL- 88 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL- 88 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh-
Confidence 344445566667777777777777777765443 33444555555555444332222 22222333322222220
Q ss_pred CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
...+..+++.+...|++-+|.++.+..... +......++.+..+.++...-..+++-..+
T Consensus 89 -----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 -----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred -----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 113344666777777777777777664322 222334566666666665555555554444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.2 Score=34.43 Aligned_cols=138 Identities=15% Similarity=0.179 Sum_probs=71.7
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhh---HHHHHHHHHhhCcH
Q 008727 129 LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG---FGVFIWKFCENAKL 205 (556)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~ 205 (556)
+.-.|..++..++..+...+. +..-+|-+|--....-+-+-..+.++.+-+ ..|... .-.++..|+..|..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~ 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKL 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT--
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcch
Confidence 344577777777777766532 555666666665555555555555555433 112211 11223333322211
Q ss_pred HHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008727 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285 (556)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 285 (556)
.......++.....|+-+.-.+++.++.+ +-+++....-.+..+|.+.|+..++.++++
T Consensus 86 --------------------se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 86 --------------------SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp ---------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 22334456666777777777777777664 235566667777777777787777777777
Q ss_pred HHHhcCCC
Q 008727 286 KKRKLGVA 293 (556)
Q Consensus 286 ~~~~~~~~ 293 (556)
+.-+.|++
T Consensus 145 ~ACekG~k 152 (161)
T PF09205_consen 145 EACEKGLK 152 (161)
T ss_dssp HHHHTT-H
T ss_pred HHHHhchH
Confidence 77776653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.08 E-value=2.5 Score=41.96 Aligned_cols=179 Identities=13% Similarity=0.035 Sum_probs=115.3
Q ss_pred HHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChH------hHHHHHHHHHh----cCCHhHH
Q 008727 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE------ICNSLLAVLAS----DGYIDNA 173 (556)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~----~g~~~~a 173 (556)
.-+|.-+... +|| ....+++...=.||-+.+++.+....+.+--..+. .|+..+..+.. ..+.+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3456666553 222 34566777777788888888888776533111222 34455544443 4568889
Q ss_pred HHHHHHHHhCCCccChhhHHHHH-HHHHhhCcHHHHHHHHHHHHhcc-CCCCCchhhHHHHHHHHhccCCHHHHHHHHHH
Q 008727 174 LKMFDEMSHRGVEFSTIGFGVFI-WKFCENAKLGQVLSMLDEVRKRE-NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251 (556)
Q Consensus 174 ~~~~~~m~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 251 (556)
.++++.+.+. -|+...|...- +.+...|++++|++.|+...... ....-....+.-+...+.-.++|++|.+.|..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 9999999886 46766665433 44556799999999999755321 11112234455677888889999999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHH-HhcCCH-------HHHHHHHHHHHh
Q 008727 252 LRIRECKPDFIAYRIVAEEF-KLMGSV-------FEREVVLKKKRK 289 (556)
Q Consensus 252 m~~~~~~p~~~~~~~ll~~~-~~~~~~-------~~a~~~~~~~~~ 289 (556)
+.+.+ .-+...|.-+..+| ...|+. ++|.++|++...
T Consensus 331 L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 331 LLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 98763 22445555555443 456777 888889887644
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.99 E-value=2.7 Score=40.60 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=63.1
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHH
Q 008727 439 NSLMEACCREDLLRPAKKLWDQMFASG-CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PDATTYTSLLEGLC 516 (556)
Q Consensus 439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~ 516 (556)
.-+..++-+.|+.++|.+.+.+|.+.. ..-+......|+.++...+.+.++..++.+..+.... .-..+|+..+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345555667788888888888887642 1123446667888888888888888888887543221 12334555443333
Q ss_pred ccCC---------------HHHHHHHHHHhhhCCCcccHHH
Q 008727 517 QETN---------------LQAAFEVFNKSVNHDVMLARSI 542 (556)
Q Consensus 517 ~~g~---------------~~~a~~~~~~m~~~~~~~~~~~ 542 (556)
..|+ -..|.+.+.+.++.|+.+..-+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 2322 1346677888888776655443
|
The molecular function of this protein is uncertain. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.82 Score=40.36 Aligned_cols=97 Identities=16% Similarity=0.114 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--ccHhhHHHHHH
Q 008727 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVP--TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF--TDMESYNVMVS 408 (556)
Q Consensus 333 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~ 408 (556)
.|+..+..+..|++..|...|...++..... ....+-.|..++...|+++.|..+|..+.+.-++ --+...--+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5777777777777777777777776654221 1233444556666666666666666665543221 11234444455
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 008727 409 FLCTSGRLREAYGVIQEMKRK 429 (556)
Q Consensus 409 ~~~~~~~~~~a~~~~~~m~~~ 429 (556)
+..+.|+.++|..+|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 555666666666666666554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=1.7 Score=41.73 Aligned_cols=146 Identities=13% Similarity=0.090 Sum_probs=96.9
Q ss_pred ChHHHHHHHHHHHh-CCCCcc-HhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhc
Q 008727 380 KSDELVEVYKVLSA-NDYFTD-MESYNVMVSFLCTS---------GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448 (556)
Q Consensus 380 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 448 (556)
..+.|..+|.+... ....|+ ...|..+..++... ....+|.++.+...+.+.. |......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 45678888888772 223343 33444444443321 2455677777788877654 788888888888888
Q ss_pred CChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHccCCHHHH
Q 008727 449 DLLRPAKKLWDQMFASGCSGN-LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD---ATTYTSLLEGLCQETNLQAA 524 (556)
Q Consensus 449 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~a 524 (556)
++++.|...|++.... .|| ..+|........-.|+.++|.+.+++..+. .|. .......+..|+..+ .+.|
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhh
Confidence 8899999999999885 455 455666666677789999999999997754 343 333344444666655 4677
Q ss_pred HHHHHHh
Q 008727 525 FEVFNKS 531 (556)
Q Consensus 525 ~~~~~~m 531 (556)
+.++-+-
T Consensus 427 ~~~~~~~ 433 (458)
T PRK11906 427 IKLYYKE 433 (458)
T ss_pred HHHHhhc
Confidence 7776543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.56 Score=45.72 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHH
Q 008727 86 SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165 (556)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 165 (556)
..+.+++-+-+.|.++.|.++...- ..-.+...+.|+++.|.++.++.. +...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~a~~~~------~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEIAKELD------DPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHHCCCCS------THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHHHHhcC------cHHHHHHHHHHHH
Confidence 3455555555555555555443321 111334445555555555433321 4445555555555
Q ss_pred hcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHH
Q 008727 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216 (556)
Q Consensus 166 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 216 (556)
+.|+++-|++.|.+... |..|+-.|.-.|+.+...++.+...
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555555554322 2233334444555544444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.2 Score=41.66 Aligned_cols=122 Identities=13% Similarity=0.053 Sum_probs=69.1
Q ss_pred HHHhcCChHHHHHHHHHHHhC-----CCC---------ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 008727 374 NLCKRNKSDELVEVYKVLSAN-----DYF---------TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439 (556)
Q Consensus 374 ~~~~~g~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 439 (556)
.|.+.|++..|..-|++.... +.. .-..+++.+.-+|.+.+++.+|++.-....+.+. +|....-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHH
Confidence 466777777777777664431 111 0122455666666777777777777776666543 2555555
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCH-HHHHHHHHHHHH
Q 008727 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLK-TYNILISKFSEVGEI-EGALRLFHNMLE 498 (556)
Q Consensus 440 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~-~~A~~~~~~m~~ 498 (556)
--..+|...|+++.|+..|+.+++. .|+-. .-+.|+..--+.... +...++|..|..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666677777777777777777764 34333 333333333333333 233566666654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.63 E-value=7.9 Score=41.73 Aligned_cols=104 Identities=17% Similarity=0.123 Sum_probs=58.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCC
Q 008727 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT--YNILISKFSEVGE 485 (556)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~ 485 (556)
..+.....+++|--.|+..-+ ....+.+|..+|+|.+|+.+..++.. ..|... -..|+.-+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHccc
Confidence 333445566666555543321 12345666777777777777766652 222222 2567777778888
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHh
Q 008727 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 486 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 531 (556)
+-+|-++..+..+. ....+..|++...+++|.++....
T Consensus 1015 h~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred chhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 88888888777643 112233445555556666555443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.57 Score=35.92 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=26.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 008727 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463 (556)
Q Consensus 410 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 463 (556)
.+..|+.+.|++.|.+....-.+ ....||.-..++--.|+.++|++-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555554443222 344555555555555555555555555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.51 E-value=1.2 Score=41.60 Aligned_cols=123 Identities=12% Similarity=0.118 Sum_probs=89.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----CCC---------CCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHH
Q 008727 408 SFLCTSGRLREAYGVIQEMKRK-----GLD---------PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473 (556)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~m~~~-----~~~---------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 473 (556)
..|.+.|++..|..-|++.... +.. .-..++..+.-+|.+.+++.+|++.-+..+..+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4567888888888887775432 111 123567888889999999999999999999887 7788777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHccCCH-HHHHHHHHHhhh
Q 008727 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT-SLLEGLCQETNL-QAAFEVFNKSVN 533 (556)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~-~~a~~~~~~m~~ 533 (556)
---..+|...|+++.|...|+++++. .|+...-. .++..-.+.... +...++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77788999999999999999999965 56554444 444433444433 445788888854
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.46 E-value=1.4 Score=43.03 Aligned_cols=132 Identities=11% Similarity=0.072 Sum_probs=56.2
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHH
Q 008727 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207 (556)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 207 (556)
...-.|+++.+.++.+.-.-. +..+....+.++..+-+.|..+.|+++-.+-. .-.....+.|+++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 344456666665555411100 01124446666666666666666665533211 11223445555555
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287 (556)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 287 (556)
|.++.++. ++...|..|.+...++|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+..
T Consensus 337 A~~~a~~~--------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 337 ALEIAKEL--------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHCCCC--------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHhc--------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 55544322 2244555566666666666666666555431 233333444455554444444443
Q ss_pred Hh
Q 008727 288 RK 289 (556)
Q Consensus 288 ~~ 289 (556)
..
T Consensus 400 ~~ 401 (443)
T PF04053_consen 400 EE 401 (443)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.39 E-value=4.4 Score=37.81 Aligned_cols=309 Identities=10% Similarity=0.037 Sum_probs=180.7
Q ss_pred ChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHH--HcCCChHHH
Q 008727 63 HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSL--SRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL--IQGKNTQKA 138 (556)
Q Consensus 63 ~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a 138 (556)
.|..+-+.|+...++.| |..|-.++.. .|+-..|.++-.+..+. +..|......|+.+- .-.|+++.|
T Consensus 68 sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~A 139 (531)
T COG3898 68 SPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDA 139 (531)
T ss_pred CcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHH
Confidence 35567777877655544 5666666543 67888887776654331 234555555555543 346899999
Q ss_pred HHHHHHHHhCCCCCChHhHHHHHH----HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHH
Q 008727 139 FSVFNEVKFNCEDIGPEICNSLLA----VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214 (556)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~li~----~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 214 (556)
.+-|+.|.. |+++--.=++ .--+.|..+.|...-++..+.-. --...+..++...|..|+|+.|+++++.
T Consensus 140 r~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~ 213 (531)
T COG3898 140 RKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDA 213 (531)
T ss_pred HHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence 999999975 4444333333 33466888888888777765432 2335677788889999999999999988
Q ss_pred HHhccCCCCCchhh--HHHHHHHHh---ccCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 215 VRKRENSMINGSVI--AVLIIHGFC---KGKRVEEAFKVLDELRIRECKPDFIAY-RIVAEEFKLMGSVFEREVVLKKKR 288 (556)
Q Consensus 215 ~~~~~~~~~~~~~~--~~~li~~~~---~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~ 288 (556)
-... .....+..- -..|+.+-. -..+...|...-.+..+ +.||...- ..-..++.+.|+..++-.+++.+-
T Consensus 214 ~~~~-~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 214 QRAA-KVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHH-HhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 7755 222222111 112222211 12245555555444443 35555432 233456788899999999998888
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 008727 289 KLGVAPRTNDYREFILGLIVERRICEAK-ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLST 367 (556)
Q Consensus 289 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 367 (556)
+....|+. ..+....+.|+..... +-...+.......-...+...-.++..|++..|..--+..... .|....
T Consensus 291 K~ePHP~i----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~ 364 (531)
T COG3898 291 KAEPHPDI----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESA 364 (531)
T ss_pred hcCCChHH----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhH
Confidence 76555543 2233344555533221 1112222222222233344444556677777766655555443 466677
Q ss_pred HHHHHHHHHh-cCChHHHHHHHHHHHhC
Q 008727 368 LSNLSKNLCK-RNKSDELVEVYKVLSAN 394 (556)
Q Consensus 368 ~~~ll~~~~~-~g~~~~a~~~~~~~~~~ 394 (556)
|..|.+.-.. .|+-.++...+-+..+.
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 7776665544 48999999888887765
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.38 E-value=5.1 Score=38.82 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=39.7
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 008727 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254 (556)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 254 (556)
.+...+-+.|+.++|++.++++.+. ....+...+...|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke-~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKE-FPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhh-CCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3444555668888888888877765 21223344566678888888888888888777543
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=3.5 Score=39.66 Aligned_cols=111 Identities=10% Similarity=0.048 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHH
Q 008727 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216 (556)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 216 (556)
+|.+..+...+.+.. |+.+...+..+..-.++++.|..+|++....+. ....+|......+.-.|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344444444443322 444444444444444445555555554444321 112233333333344455555555555544
Q ss_pred hccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHH
Q 008727 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251 (556)
Q Consensus 217 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 251 (556)
+. ........+....++.|+.. .+++|.++|-+
T Consensus 400 rL-sP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 400 QL-EPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred cc-CchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 33 11111122222233344433 34556665543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.17 Score=30.85 Aligned_cols=24 Identities=4% Similarity=-0.068 Sum_probs=10.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHh
Q 008727 124 FIIPSLIQGKNTQKAFSVFNEVKF 147 (556)
Q Consensus 124 ~li~~~~~~~~~~~a~~~~~~~~~ 147 (556)
.+...|.+.|++++|+++|+++.+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.13 E-value=2.1 Score=33.03 Aligned_cols=90 Identities=13% Similarity=0.010 Sum_probs=70.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH---hHHHHHHHHHhhcC
Q 008727 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK-GLDPDV---SFYNSLMEACCRED 449 (556)
Q Consensus 374 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~---~~~~~ll~~~~~~~ 449 (556)
+....|+++.|++.|.+....-+. ....||.-.+++--.|+.++|+.-+++..+. |.+ .. ..|.--...|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 467889999999999998876544 7779999999999999999999999888764 322 22 23444445567789
Q ss_pred ChhhHHHHHHHHHHcC
Q 008727 450 LLRPAKKLWDQMFASG 465 (556)
Q Consensus 450 ~~~~a~~~~~~~~~~~ 465 (556)
+-+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 9999999998888776
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.12 E-value=2.7 Score=34.30 Aligned_cols=135 Identities=12% Similarity=0.076 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH-HhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChH-hHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDS-SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE-ICNSL 160 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 160 (556)
+...|..-++ +++.+..++|..-|..+.+.|...-+ -..-.......+.|+...|+..|+++-.-...|-+. -..-|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4444544333 35667778888888888777643222 222233444567788888888888876543322221 11111
Q ss_pred --HHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhc
Q 008727 161 --LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 161 --i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 218 (556)
.-.+..+|.++......+-+...+-+.-...-..|--+..+.|++..|.+.|..+...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1223456777777766666655443333344445555556667777777777766654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.95 E-value=2.9 Score=34.11 Aligned_cols=124 Identities=12% Similarity=0.037 Sum_probs=50.6
Q ss_pred HhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHH--HHHhcCC
Q 008727 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI-AYRIVAE--EFKLMGS 276 (556)
Q Consensus 200 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~--~~~~~~~ 276 (556)
.+.++.++|+.-|..+.+. |.........-.+.......|+...|...|++.-.....|-.. -..-|=. .+...|.
T Consensus 69 A~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 3444445555555555443 2221112222223333445556666666666655443233222 1111111 1234455
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 008727 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324 (556)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (556)
++......+.+-..+-......-..|--+-.+.|++.+|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 555544444433322222222222333344455555555555555443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.64 Score=41.65 Aligned_cols=60 Identities=18% Similarity=0.171 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 462 (556)
++..++..+...|+.+.+.+.++++...... +...|..++.+|.+.|+...|+..|+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4444555555555555555555555544332 44455555555555555555555555444
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.86 E-value=3.1 Score=34.15 Aligned_cols=133 Identities=19% Similarity=0.269 Sum_probs=68.0
Q ss_pred HHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHc-
Q 008727 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS- 464 (556)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 464 (556)
++++.+.+.++.|+...+..+++.+.+.|++... ..+...++-+|.......+-.+.. ....+.++=-+|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh
Confidence 3445555666666777777777777777765443 333444445555444433332222 222333333333321
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 465 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
+ ..+..++..+...|++-+|+++.+..... +......++.+..+.+|...=..+++-..+
T Consensus 89 ~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 G-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 12455666777777777777777664321 222334456666666665544444444333
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=93.83 E-value=2.5 Score=37.90 Aligned_cols=145 Identities=12% Similarity=0.174 Sum_probs=76.0
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHh-CCCCCCHHhHHHHHHHHHc-CC-ChHHHHHHH
Q 008727 66 LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKV-NKITLDSSVYRFIIPSLIQ-GK-NTQKAFSVF 142 (556)
Q Consensus 66 ~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~~-~~~~a~~~~ 142 (556)
.-+.|++-...+........ |..++. +...+.+|.++|+.... ..+-.|..+...+++.... .+ ....--++.
T Consensus 114 Dli~FL~~~i~~~~~~k~~~-Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV 189 (292)
T PF13929_consen 114 DLISFLKLVIINLSSNKSFN-YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVV 189 (292)
T ss_pred HHHHHHHHHHhccccccchH-HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHH
Confidence 44555555444433333322 333221 23344555555553222 2234456666666666554 22 222222333
Q ss_pred HHHH-hCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCccChhhHHHHHHHHHhhCcHHHHHHHHHH
Q 008727 143 NEVK-FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR-GVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214 (556)
Q Consensus 143 ~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 214 (556)
+-+. ..+..++..+....+..+++.+++..-.++++..... +..-|...|...|+.....||..-..++.++
T Consensus 190 ~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 190 DFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 3332 2234556666667777777777777777776665554 4455666677777777777776666666554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.65 E-value=2.1 Score=38.87 Aligned_cols=154 Identities=9% Similarity=-0.030 Sum_probs=88.6
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHh----hHHHHHHHHHhcCCH
Q 008727 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME----SYNVMVSFLCTSGRL 416 (556)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~ 416 (556)
+.+|+..+|-..++++++. .+.|...+...-.+|.-.|+.+.-...++++... ..+|.. +-.....++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4567777777777777654 3345555666666777777777777777666543 112222 222333344567777
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 008727 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS---GCSGNLKTYNILISKFSEVGEIEGALRLF 493 (556)
Q Consensus 417 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 493 (556)
++|++.-++..+.+. .|.-.-.++.+.+-..|+..++.++..+-... +--.-.+.|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 777777777666543 25556666667777777777777766554322 10011222333333445567777777777
Q ss_pred HHHH
Q 008727 494 HNML 497 (556)
Q Consensus 494 ~~m~ 497 (556)
++=+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7643
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.9 Score=40.77 Aligned_cols=79 Identities=8% Similarity=0.044 Sum_probs=56.8
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCccChhhHH
Q 008727 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH-----RGVEFSTIGFG 193 (556)
Q Consensus 119 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~ 193 (556)
..++..+++.+...|+.+.+.+.++.+....+- +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 456677777777778888888877777766433 677788888888888888888777777654 56777777666
Q ss_pred HHHHH
Q 008727 194 VFIWK 198 (556)
Q Consensus 194 ~li~~ 198 (556)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55555
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.61 E-value=5.8 Score=36.46 Aligned_cols=129 Identities=11% Similarity=0.192 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh--cC----CHhHHHHHHHHHHhCCC---ccChhhHHHHHHHHHhhCcH
Q 008727 135 TQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS--DG----YIDNALKMFDEMSHRGV---EFSTIGFGVFIWKFCENAKL 205 (556)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~ 205 (556)
+++...+++.+.+.|..-+..+|-+..-.... .. ....|.++|+.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455666667777666555554442222222 11 24567777777777542 2344455554422 22222
Q ss_pred ----HHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC---HHHHHHHHHHHhhCCCCCCHHHHHH
Q 008727 206 ----GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR---VEEAFKVLDELRIRECKPDFIAYRI 266 (556)
Q Consensus 206 ----~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~~~~p~~~~~~~ 266 (556)
+.++.+|+.+... |....+..-+.+-+-++..... ...+.++++.+.+.|+++....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~-~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADA-GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 3344444444443 4444333323222222222111 2244455555555555544444433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.51 E-value=2.7 Score=34.00 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=24.4
Q ss_pred hhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 008727 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255 (556)
Q Consensus 201 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 255 (556)
+.++.+.+..+++.+.-. .|.....-..-...+...|+|.+|.++|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvL---RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL---RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 334555555555555433 2222222222233445556666666666665544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.31 E-value=7.7 Score=39.56 Aligned_cols=15 Identities=13% Similarity=-0.104 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHcCC
Q 008727 312 ICEAKELGEVIVSGK 326 (556)
Q Consensus 312 ~~~a~~~~~~~~~~~ 326 (556)
...+.+.++...+.|
T Consensus 228 ~~~a~~~~~~~a~~g 242 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG 242 (552)
T ss_pred hhHHHHHHHHHHhhc
Confidence 445556665555543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.19 E-value=2.9 Score=35.10 Aligned_cols=65 Identities=20% Similarity=0.159 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF--IAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 226 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
...+..+...|++.|+.++|.+.|.++.+....+.. ..+-.+|+.....+++..+...+.+....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345667788888888888888888888776433332 34566777777788888877777665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.34 Score=29.46 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008727 157 CNSLLAVLASDGYIDNALKMFDEMSH 182 (556)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (556)
|..+...|.+.|++++|+++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444444443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.55 E-value=6 Score=33.72 Aligned_cols=177 Identities=16% Similarity=0.092 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHH
Q 008727 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216 (556)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 216 (556)
-|.-=|.+.....++ -+.+||.|.-.+...|+++.|.+.|+...+.+..-+-...|.-| ++.-.|++.-|.+-|...-
T Consensus 83 LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 83 LARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFY 160 (297)
T ss_pred HHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHH
Confidence 333334444333222 45688888888888899999999888888876443333333333 3345688888887777776
Q ss_pred hccCCCCCchhhHHHHHHHHhccCCHHHHHHHHH-HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--
Q 008727 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD-ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA-- 293 (556)
Q Consensus 217 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-- 293 (556)
+.+.. .|-...|--++. ..-+..+|..-+. +..+. |..-|...|-.+.- |++. ...+++.+......
T Consensus 161 Q~D~~-DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 161 QDDPN-DPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNT 230 (297)
T ss_pred hcCCC-ChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchH
Confidence 65122 221233322222 2335555554433 22222 44445443333221 1111 11122222221110
Q ss_pred ----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 008727 294 ----PRTNDYREFILGLIVERRICEAKELGEVIVSG 325 (556)
Q Consensus 294 ----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 325 (556)
.=+.||--+.+-+...|+.++|..+|+..+..
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 01125556666777778888888877766543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.54 E-value=8.7 Score=35.55 Aligned_cols=96 Identities=4% Similarity=-0.056 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCc--hhhHHHHHHHHhccCCHHHHHHHHHHHhhCC-----CCCCHHHH
Q 008727 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMING--SVIAVLIIHGFCKGKRVEEAFKVLDELRIRE-----CKPDFIAY 264 (556)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-----~~p~~~~~ 264 (556)
|..+.+++-+.-++.+++.+-..-....|..+.. ......+..++...+.++.+++.|+...+-. .-.....|
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 3334444444445555555544444443333311 1222345555666666777777776654321 11122456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 008727 265 RIVAEEFKLMGSVFEREVVLKKK 287 (556)
Q Consensus 265 ~~ll~~~~~~~~~~~a~~~~~~~ 287 (556)
..|-+.|.+..++++|.-+..+.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA 188 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKA 188 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhH
Confidence 66667777777777776555443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.25 E-value=15 Score=37.71 Aligned_cols=153 Identities=11% Similarity=0.091 Sum_probs=81.9
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCC---CHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITL---DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD 167 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 167 (556)
++-+.+.+.+++|+++.+..... .+ ........|..+.-.|++++|-...-.|... +...|..-+..++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 55566777777777766543332 23 3456677777778888888887777777544 556666666666666
Q ss_pred CCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHH--------------HHhccCCCCCchhhHHHHH
Q 008727 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE--------------VRKRENSMINGSVIAVLII 233 (556)
Q Consensus 168 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------------~~~~~~~~~~~~~~~~~li 233 (556)
++.... +.-++......+...|..++-.+.. .+...-.++... ...+......+......|+
T Consensus 437 ~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 437 DQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred cccchh---hccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 554432 2223333233345556655555544 221111111111 0000000011122233477
Q ss_pred HHHhccCCHHHHHHHHHHHh
Q 008727 234 HGFCKGKRVEEAFKVLDELR 253 (556)
Q Consensus 234 ~~~~~~~~~~~A~~~~~~m~ 253 (556)
..|...+++..|++++-..+
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHccChHHHHHHHHhcc
Confidence 77888888888888777665
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.86 E-value=10 Score=34.75 Aligned_cols=152 Identities=7% Similarity=-0.090 Sum_probs=92.1
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccCh--hhH--HHHHHHHHhhCcH
Q 008727 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFST--IGF--GVFIWKFCENAKL 205 (556)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~--~~li~~~~~~g~~ 205 (556)
.-.|+..+|-..++++.+.- +-|.-+++.-=++|.-.|+.+.-...++++... -.+|. .+| ....-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34577777777788887653 337777887788888888888888888877653 11232 222 2223334466888
Q ss_pred HHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHhcCCHHHHHH
Q 008727 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC---KPDFIAYRIVAEEFKLMGSVFEREV 282 (556)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~ 282 (556)
++|++.-++..+. .+.+.....++...+-..|+..++.+...+-...-- -.-.+.|=...-.+...+.++.|++
T Consensus 192 ~dAEk~A~ralqi---N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 192 DDAEKQADRALQI---NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hhHHHHHHhhccC---CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 8888877777655 455555556677777777888888777655332100 0011112222233445567777777
Q ss_pred HHHH
Q 008727 283 VLKK 286 (556)
Q Consensus 283 ~~~~ 286 (556)
+|+.
T Consensus 269 IyD~ 272 (491)
T KOG2610|consen 269 IYDR 272 (491)
T ss_pred HHHH
Confidence 7754
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.81 E-value=10 Score=34.85 Aligned_cols=133 Identities=11% Similarity=0.075 Sum_probs=79.8
Q ss_pred HhHHHHHHHHHHhCCCccChhhHHHHHHHHHh--h----CcHHHHHHHHHHHHhccCCCCC-chhhHHHHHHHHhccCC-
Q 008727 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE--N----AKLGQVLSMLDEVRKRENSMIN-GSVIAVLIIHGFCKGKR- 241 (556)
Q Consensus 170 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~----g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~- 241 (556)
+++...+++.|.+.|..-+..+|.+..-.... . ....++..+++.|++....... +...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 55678889999999988888777664433322 2 3456788899999877333222 22233333322 3333
Q ss_pred ---HHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 008727 242 ---VEEAFKVLDELRIRECKPDFI--AYRIVAEEFKLMGS--VFEREVVLKKKRKLGVAPRTNDYREFIL 304 (556)
Q Consensus 242 ---~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 304 (556)
.+.++.+|+.+.+.|+..+-. ....++..+..... ...+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 356777888888877655332 33333333322222 4467788888888888887777655443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.18 Score=29.10 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=10.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 008727 473 YNILISKFSEVGEIEGALRLFHN 495 (556)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~ 495 (556)
|..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444444444444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.48 Score=27.26 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=19.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 507 TYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677788888888888888888854
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.36 E-value=9.2 Score=33.34 Aligned_cols=168 Identities=19% Similarity=0.124 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHhHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS-FLCTSGRLREAYGVIQEMKRKGL--DPDVSFYNSL 441 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l 441 (556)
...+......+...+++..+.+.+.........+ ......... .+...|+++.|...+.+...... ......+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 173 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLAL 173 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHh
Confidence 3444444555555666666666666666543332 112222222 56667777777777777644211 1123333334
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccC
Q 008727 442 MEACCREDLLRPAKKLWDQMFASGCSG-NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQET 519 (556)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 519 (556)
...+...++.+.+...+....+.. .. ....+..+...+...++.+.|...+...... .|+ ...+..+...+...|
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELG 250 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcC
Confidence 444556677777777777777642 22 3566666777777777777777777777654 232 333444444444556
Q ss_pred CHHHHHHHHHHhhhCCC
Q 008727 520 NLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 520 ~~~~a~~~~~~m~~~~~ 536 (556)
..+++...+.+..+...
T Consensus 251 ~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 251 RYEEALEALEKALELDP 267 (291)
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 67777777777665554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.12 E-value=26 Score=38.11 Aligned_cols=57 Identities=16% Similarity=0.082 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 258 KPDFIAYRIVAEE----FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323 (556)
Q Consensus 258 ~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (556)
+|+...+.....+ +...+.+++|.-.|+..-+ ....+.+|..+|++.+|..+..++.
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLS 992 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhc
Confidence 4555554444433 3445666666555554322 1234556666777777766655543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.87 E-value=5.8 Score=33.29 Aligned_cols=61 Identities=10% Similarity=0.168 Sum_probs=34.3
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC--ChHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008727 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI--GPEICNSLLAVLASDGYIDNALKMFDEMS 181 (556)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (556)
.+..+...|.+.|+.+.|.+.|..+.+....+ -...+-.+|+.....+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45556666666666666666666665543322 22345555666666666666655555543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.68 E-value=16 Score=34.91 Aligned_cols=371 Identities=13% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHh
Q 008727 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201 (556)
Q Consensus 122 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 201 (556)
.+-++..|...|+..+|.+..+.+.. +.......-+++...+.-..|..+.-.+...+...+...-+.+.+++.+
T Consensus 217 In~~l~eyv~~getrea~rciR~L~v-----sffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr 291 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELGV-----SFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSR 291 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhCC-----CchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchh
Q ss_pred hC--------cHHHHHHHHHHHHhccCCCCCchhhH-HHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008727 202 NA--------KLGQVLSMLDEVRKRENSMINGSVIA-VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272 (556)
Q Consensus 202 ~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 272 (556)
.+ +...|...|+.+..+ .+...... +.+-..-...|+.+. .+.|++ +...+|+-|.
T Consensus 292 ~~~slddl~ldiP~a~~~~esiv~K---a~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-----------~~~~IIqEYF 356 (645)
T KOG0403|consen 292 KGGSLDDLVLDIPSARYDFESIVPK---APSGGWLDENSFKETSVLPGDSEN-LRAFKK-----------DLTPIIQEYF 356 (645)
T ss_pred hccccccccccCcchhhhhhhhccc---CCCCCccchhhhcccccCCCcchH-HHHHHH-----------hhHHHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcC-----Ch
Q 008727 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFIL-GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-----DP 346 (556)
Q Consensus 273 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~ 346 (556)
..|+..+..+.++.+-.- ..++.....+|. ++-+.++-.+...+|-.-+....-+...+-+.....+... +.
T Consensus 357 lsgDt~Evi~~L~DLn~~--E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~ 434 (645)
T KOG0403|consen 357 LSGDTPEVIRSLRDLNLP--EYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDI 434 (645)
T ss_pred hcCChHHHHHHHHHcCCc--cccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccc
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH---------------------hCCCCccHhhHHH
Q 008727 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS---------------------ANDYFTDMESYNV 405 (556)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---------------------~~~~~~~~~~~~~ 405 (556)
..|-+.+..++..-+..+.-.-..+=....+..-...+.+.++... ...+.--..-...
T Consensus 435 p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~ 514 (645)
T KOG0403|consen 435 PRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDM 514 (645)
T ss_pred cccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-
Q 008727 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG- 484 (556)
Q Consensus 406 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 484 (556)
++.-|...|+..+|.+.++++----+. ....+.+++.+.-+.++-...+.+++..-+.|+ .|-+.|-.+|.+-.
T Consensus 515 LLeEY~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~RV~d 589 (645)
T KOG0403|consen 515 LLEEYELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFERVYD 589 (645)
T ss_pred HHHHHHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhhhhc
Q ss_pred -------CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 008727 485 -------EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (556)
Q Consensus 485 -------~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 520 (556)
++..|.+.|+...+.+.. +...|..|-.-|-..++
T Consensus 590 sl~DlsLDvPna~ekf~~~Ve~~~~-~G~i~~~l~~~~~s~l~ 631 (645)
T KOG0403|consen 590 SLPDLSLDVPNAYEKFERYVEECFQ-NGIISKQLRDLCPSRLR 631 (645)
T ss_pred cCcccccCCCcHHHHHHHHHHHHHH-cCchhHHhhhcchhhhc
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.42 E-value=23 Score=36.25 Aligned_cols=180 Identities=10% Similarity=0.043 Sum_probs=100.2
Q ss_pred hhHHHHHHHHhHhCCCCCCHHhHHHHHHH-----HHcCCChHHHHHHHHHHHh-------CCCCCChHhHHHHHHHHHhc
Q 008727 100 INAIDSVLKQVKVNKITLDSSVYRFIIPS-----LIQGKNTQKAFSVFNEVKF-------NCEDIGPEICNSLLAVLASD 167 (556)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~ 167 (556)
...+.++++...+.| +......+... +....|.+.|+..|+...+ .| .+...+-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456888888888777 23332222222 3456788899999888866 44 344666677777664
Q ss_pred C-----CHhHHHHHHHHHHhCCCccChhhHHHHHHHHHh-hCcHHHHHHHHHHHHhccCCCCCchhhHHHHHH--HHhcc
Q 008727 168 G-----YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE-NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH--GFCKG 239 (556)
Q Consensus 168 g-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~ 239 (556)
. +.+.|..+|....+.|. |+...+...+..... ..+...|.++|...... |... ...+..++. +..-.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~--A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHIL--AIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CChH--HHHHHHHHHHhCCCcC
Confidence 3 56678888888877763 444433332222222 24567888888888766 3322 122211111 11233
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008727 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291 (556)
Q Consensus 240 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 291 (556)
.+.+.|..++.+..++| .|...--...+..+.. ++.+.+...+..+.+.|
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 46777888888777776 3332222222333333 55555555555554443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.011 Score=47.82 Aligned_cols=53 Identities=8% Similarity=0.115 Sum_probs=22.8
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHH
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 143 (556)
++.+.+.+.+..+..+++.+...+...+....+.++..|++.++.++..+.++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444444444444444444443333334444444444444444444444333
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.09 E-value=22 Score=35.50 Aligned_cols=376 Identities=10% Similarity=0.011 Sum_probs=178.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHH-cCCChHHHHHHHHHHHhC-CCC-CChHhHHHHHH
Q 008727 86 SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI-QGKNTQKAFSVFNEVKFN-CED-IGPEICNSLLA 162 (556)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~li~ 162 (556)
-|......=.+.|..+.+..+|++-.. +++.+...|...+..+. ..|+.+...+.|+..... |.. .+...|...|.
T Consensus 81 yW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie 159 (577)
T KOG1258|consen 81 YWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIE 159 (577)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHH
Confidence 455555555677888888888888776 46667777766655544 456777777777777553 221 13446777777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHh---h------CcHHHHHHHHHHHHhc--cCCCCCchhhHHH
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE---N------AKLGQVLSMLDEVRKR--ENSMINGSVIAVL 231 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---~------g~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 231 (556)
.-...+++.....+|+++++... .-|+.....|.+ . ...+++.++-.....+ .+...........
T Consensus 160 ~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~ 235 (577)
T KOG1258|consen 160 FENGQKSWKRVANIYERILEIPL----HQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEI 235 (577)
T ss_pred HHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHH
Confidence 77777888888888888876421 222222222211 1 1222222222222210 0000000000000
Q ss_pred HHHHH-hccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC----ChhhHHHHH
Q 008727 232 IIHGF-CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL---GVAP----RTNDYREFI 303 (556)
Q Consensus 232 li~~~-~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~ll 303 (556)
-+..- ...+..+++.....+.. ...-..+...-...+....++.-.+. .++| +..+|...+
T Consensus 236 ~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yL 304 (577)
T KOG1258|consen 236 GVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYL 304 (577)
T ss_pred HHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHh
Confidence 00000 00111111111111000 00001111122222233333333222 1222 334566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCh
Q 008727 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV--PTLSTLSNLSKNLCKRNKS 381 (556)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~ 381 (556)
.--...|+.+.+.-+++...-..-.-+....+-+...-..|+.+-|..++....+-..+ |....+.+.+ .-..|++
T Consensus 305 df~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~ 382 (577)
T KOG1258|consen 305 DFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNF 382 (577)
T ss_pred hhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccH
Confidence 66677788877777777665432222333333333333346666666555444333322 2222222222 2335688
Q ss_pred HHHHHHHHHHHhCCCCccHh-hHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCHhHHHHHHHH-----HhhcCChh
Q 008727 382 DELVEVYKVLSANDYFTDME-SYNVMVSFLCTSGRLREAY---GVIQEMKRKGLDPDVSFYNSLMEA-----CCREDLLR 452 (556)
Q Consensus 382 ~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~---~~~~~m~~~~~~p~~~~~~~ll~~-----~~~~~~~~ 452 (556)
+.|..+++.+.+.- |+.. .-..-+....+.|..+.+. +++........ +..+...+.-- +.-.++.+
T Consensus 383 ~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~ 458 (577)
T KOG1258|consen 383 DDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDAD 458 (577)
T ss_pred HHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHH
Confidence 88888888887753 3332 2222233345567777666 33333222211 22222222222 22356788
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 008727 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (556)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 484 (556)
.|..++.++.+. ++++...|..++......+
T Consensus 459 ~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 459 LARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 888888888876 3666777777777666555
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.74 E-value=11 Score=34.26 Aligned_cols=101 Identities=10% Similarity=0.051 Sum_probs=53.2
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCC---CCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhH
Q 008727 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC---EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192 (556)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 192 (556)
+.+..+-..++..-....+.+.++..+-++.... ..++. +-.+.++.+.+ -++++++.++..=++.|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhH
Confidence 3334444444444444555666665555553221 01111 11122222222 2455666666666677777777777
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHhc
Q 008727 193 GVFIWKFCENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~~~~~ 218 (556)
+.+|+.+.+.+++..|.++...+..+
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777666666554
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.57 E-value=22 Score=34.78 Aligned_cols=181 Identities=10% Similarity=0.079 Sum_probs=127.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
.|-...-+++..++......-++.+..+|..-| .+.-.|..++..|... .-++-..+|+.+.+.... |+..-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 455566788999999999999999999999876 5778889999999988 667788889988887665 556666666
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCcc-----ChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHH
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEF-----STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 236 (556)
..|-+ ++.+.+...|.....+=++- -...|..+.. .-..+.+....+...+....|.. .....+..+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~-~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEG-RGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHh
Confidence 66666 88888888888876542210 1123444432 11467777788887777663333 3356666677888
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008727 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271 (556)
Q Consensus 237 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 271 (556)
....++++|++++..+.+..-+ |...-..++..+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 8999999999999987766422 555544555443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.39 E-value=2.6 Score=37.99 Aligned_cols=49 Identities=10% Similarity=0.154 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008727 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 428 (556)
+.++++.++..=...|+.||-.+++.+|+.+.+.+++.+|.++...|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3344444444444455555555555555555555555555554444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.27 E-value=9.8 Score=30.38 Aligned_cols=51 Identities=22% Similarity=0.109 Sum_probs=25.4
Q ss_pred hCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 008727 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255 (556)
Q Consensus 202 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 255 (556)
.++.+.+..+++.+.-. .|.....-..-...+...|+|++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvL---rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL---RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh---CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555533 2222222222233445566666666666666554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.28 Score=39.62 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=48.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 008727 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485 (556)
Q Consensus 406 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 485 (556)
+|..+.+.+..+....+++.+...+..-+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555566666666677777666554445666677777777776666666665511 11222345556666666
Q ss_pred HHHHHHHHHHH
Q 008727 486 IEGALRLFHNM 496 (556)
Q Consensus 486 ~~~A~~~~~~m 496 (556)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666666554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=89.20 E-value=16 Score=32.88 Aligned_cols=136 Identities=9% Similarity=0.130 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHhh-cC-ChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHH
Q 008727 415 RLREAYGVIQEMKR-KGLDPDVSFYNSLMEACCR-ED-LLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGAL 490 (556)
Q Consensus 415 ~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 490 (556)
.+.+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+.+... |-.++..+...++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666652221 1233356666666666654 22 233334444444433 34677778888888889999999888
Q ss_pred HHHHHHHHC-CCCCCHhhHHHHHHHHHccCCHHHHHHHHHH-----hhhCCCcccHHHHHHHHHHH
Q 008727 491 RLFHNMLEK-GVAPDATTYTSLLEGLCQETNLQAAFEVFNK-----SVNHDVMLARSILSTFMISL 550 (556)
Q Consensus 491 ~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-----m~~~~~~~~~~~~~~l~~~~ 550 (556)
++|+.-... +..-|...|..+|+.....|+..-...+.++ +.+.++..++.+-..+-+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 888887655 5566888889999988899988877777775 35666766666666554443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.16 E-value=0.55 Score=26.62 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHH
Q 008727 469 NLKTYNILISKFSEVGEIEGAL 490 (556)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~ 490 (556)
|...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555555555555555543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.08 E-value=3.3 Score=30.02 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=31.1
Q ss_pred ChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 008727 99 QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147 (556)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 147 (556)
+.-++++-++.+...++-|++.+..+.+++|.+.+++..|+++|+.++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344555556666666666666667777777777777777777766653
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.02 E-value=31 Score=35.80 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=12.2
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCC
Q 008727 480 FSEVGEIEGALRLFHNMLEKGVAP 503 (556)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~g~~p 503 (556)
+...|++++|++.++++ ++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L---~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL---DLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHT---T-S-
T ss_pred HHHcCCHHHHHHHHHhC---CCCC
Confidence 45677888887666665 5666
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.00 E-value=3.3 Score=30.01 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
+.+-++.+....+.|++....+.+.+|-+.+++..|.++|+-.+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.82 E-value=7.6 Score=28.55 Aligned_cols=47 Identities=2% Similarity=0.022 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhc
Q 008727 172 NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 172 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 218 (556)
+..+-++.+...++.|+.....+.+++|-+.+|+..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45566666666777777777777777777777777777777777765
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.63 E-value=0.53 Score=26.69 Aligned_cols=25 Identities=16% Similarity=0.012 Sum_probs=17.2
Q ss_pred CCCchhhHHHHHHHHhccCCHHHHH
Q 008727 222 MINGSVIAVLIIHGFCKGKRVEEAF 246 (556)
Q Consensus 222 ~~~~~~~~~~li~~~~~~~~~~~A~ 246 (556)
.|++..+|+.+...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 5666667777777777777777664
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.51 E-value=1 Score=25.30 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=12.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 472 TYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
+|..+..+|...|++++|+..|++.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 34444455555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.14 E-value=1.2 Score=27.09 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=15.3
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhCCCcc
Q 008727 511 LLEGLCQETNLQAAFEVFNKSVNHDVML 538 (556)
Q Consensus 511 l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 538 (556)
+..+|...|+.+.|.+++++.+..+-.+
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~~~ 32 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGDEA 32 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCHH
Confidence 4455556666666666666555544333
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=87.89 E-value=23 Score=32.95 Aligned_cols=129 Identities=12% Similarity=0.094 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC-----CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHhHHH
Q 008727 369 SNLSKNLCKRNKSDELVEVYKVLSAN-----DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR----KGLDPDVSFYN 439 (556)
Q Consensus 369 ~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~~ 439 (556)
.++-.++...+.++++.+.|+...+. +......++..+-..|.+..++++|.-+..+..+ .++.--..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 34555566666666666666655431 1111233566666666666666666655554332 12221111222
Q ss_pred H-----HHHHHhhcCChhhHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 440 S-----LMEACCREDLLRPAKKLWDQMFAS----GCSG-NLKTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 440 ~-----ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
. +.-++-..|....|.+.-++..+. |-.+ .....-.+.+.|-..|+.+.|+.-|+...
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 222344555555555555554432 2111 12223344555556666666555555544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.84 E-value=31 Score=34.44 Aligned_cols=135 Identities=12% Similarity=0.130 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
-+...|..++.---...+.+.+..++..+...- |.----|......=.+.|..+.+.++|+..... ++.+...|....
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 455667777776666666777788888877653 223334555555556788899999999988653 556777777766
Q ss_pred HHHHh-cCCHhHHHHHHHHHHhC-CCc-cChhhHHHHHHHHHhhCcHHHHHHHHHHHHhc
Q 008727 162 AVLAS-DGYIDNALKMFDEMSHR-GVE-FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 162 ~~~~~-~g~~~~a~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 218 (556)
..+.. .|+.+...+.|+..... |.. .+...|...|.--...+++.....+++.+.+.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 65554 47777778888877663 322 13345555665555667777777777777654
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=87.77 E-value=20 Score=35.08 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=8.5
Q ss_pred HHHHHhcCCHHHHHHHH
Q 008727 303 ILGLIVERRICEAKELG 319 (556)
Q Consensus 303 l~~~~~~~~~~~a~~~~ 319 (556)
+...+..|+.+.+..++
T Consensus 72 L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 72 LHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 34444556655544444
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.59 E-value=16 Score=30.77 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=41.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCccHhhHHH-----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh
Q 008727 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNV-----MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447 (556)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 447 (556)
..+...|++++|...++..... |....+.. +.+.....|.+|+|+..++.....+.. ......-...+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 3455566666666666554432 11112222 223444556666666666554443221 1222333445555
Q ss_pred cCChhhHHHHHHHHHHc
Q 008727 448 EDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 448 ~~~~~~a~~~~~~~~~~ 464 (556)
.|+-++|+.-|+.....
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 56666666666555554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.52 E-value=19 Score=31.54 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 008727 332 DVLNALIGSVSSIDPRSAIVFF 353 (556)
Q Consensus 332 ~~~~~l~~~~~~~~~~~a~~~~ 353 (556)
.+...|+.+|..||.+++.+++
T Consensus 229 r~lenLL~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 229 RSLENLLTAYDEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHhccCCHHHHHHHH
Confidence 3444555555555555544443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.46 E-value=16 Score=30.72 Aligned_cols=125 Identities=15% Similarity=0.157 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH-----HHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHH-
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS-----LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI- 475 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 475 (556)
.|..++.... .+.. +.....+.+.... ...+|.. +...+...+++++|..-++..... |.-..+..
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l 127 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKAL 127 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHH
Confidence 4444444433 2333 4455555665542 2333432 334567888999999888877753 22223333
Q ss_pred ----HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 476 ----LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 476 ----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
|.......|.+++|+..++...+.++. ......-...+...|+-++|+.-|++..+.+.
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 445677889999999999888765443 22334445678889999999999999888863
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.35 E-value=14 Score=30.00 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=60.4
Q ss_pred hHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHhHHH-HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 008727 402 SYNVMVSFL---CTSGRLREAYGVIQEMKRKGLDPDVSFYN-SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477 (556)
Q Consensus 402 ~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 477 (556)
+.+.||... .+.++.+++..++..+.-. +|...... .-...+...|++.+|.++|+++.+. .|....-..|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALl 84 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHH
Confidence 444454433 4567888888888888765 44433222 2233456778888888888887664 24333334444
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 008727 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526 (556)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 526 (556)
..|....+-..=...-+++.+.+-.|+.. .+++.+....+...|.+
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence 44433322222222333344443333222 34455544444444433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.07 E-value=7.6 Score=32.65 Aligned_cols=90 Identities=17% Similarity=0.132 Sum_probs=60.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 008727 409 FLCTSGRLREAYGVIQEMKRKGLDPD----VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (556)
Q Consensus 409 ~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 484 (556)
-+.+.|++++|..-|...++.-.... ...|..-..++.+.+.++.|+.--...++.+ +........-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 36678888888888888877622111 2345555667778888888888777777654 222333333455777888
Q ss_pred CHHHHHHHHHHHHHC
Q 008727 485 EIEGALRLFHNMLEK 499 (556)
Q Consensus 485 ~~~~A~~~~~~m~~~ 499 (556)
.+++|++-|+.+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 888888888888865
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.06 E-value=1.4 Score=24.62 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=12.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 508 YTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 508 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
|..+...+.+.|++++|++.+++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444555555555555555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.96 E-value=4.8 Score=29.56 Aligned_cols=46 Identities=7% Similarity=0.055 Sum_probs=27.0
Q ss_pred HHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 008727 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147 (556)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 147 (556)
+.++-++.+...++-|++.+..+.+++|.+.+++..|+++|+.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455555555566666666666667777777777777777766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.83 E-value=6.4 Score=33.29 Aligned_cols=72 Identities=15% Similarity=0.075 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHccCCHHHH
Q 008727 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK---GVAPDATTYTSLLEGLCQETNLQAA 524 (556)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~a 524 (556)
+.|.+.|-.+...+.--++.....|..-|. ..+.+++..++.+..+. +-.+|+..+.+|...+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555555543344444444443333 44566666666665543 2245566666666666666666655
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=86.46 E-value=42 Score=34.50 Aligned_cols=28 Identities=7% Similarity=0.017 Sum_probs=0.0
Q ss_pred ccCCHHHHHHHHHHhhhCCCcccHHHHH
Q 008727 517 QETNLQAAFEVFNKSVNHDVMLARSILS 544 (556)
Q Consensus 517 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 544 (556)
+.|+..+|.+.+-.+++.+..|..-...
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~ 534 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPL 534 (566)
T ss_dssp ----------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHH
Confidence 4577888888777777777666544433
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.39 E-value=21 Score=30.94 Aligned_cols=153 Identities=17% Similarity=0.137 Sum_probs=96.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHhCCC--CccHhhHHHHHHHHHhcCCHHHHH
Q 008727 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSK-NLCKRNKSDELVEVYKVLSANDY--FTDMESYNVMVSFLCTSGRLREAY 420 (556)
Q Consensus 344 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~ 420 (556)
++...+.+.+.........+. ........ .+...|+++.+...+........ ......+......+...++.+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 187 (291)
T COG0457 109 GKYEEALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEAL 187 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHH
Confidence 345555555555554333321 11111112 57788888888888888755321 112333444444466778888999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN-LKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 421 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
..+..............+..+...+...++.+.|...+...... .|+ ...+..+...+...+..+.+...+.+....
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 188 ELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888877632213567777788888888889999998888875 333 444555555555777788898888888765
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.24 E-value=2 Score=25.36 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 471 KTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345556666666666666666666654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.80 E-value=48 Score=34.51 Aligned_cols=191 Identities=9% Similarity=0.037 Sum_probs=93.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCC-CC-----HHHHHHHHHH--HHhcCChHHHHHHHH--------HHHhCCCCccHhhHH
Q 008727 341 VSSIDPRSAIVFFNFMIEKGRV-PT-----LSTLSNLSKN--LCKRNKSDELVEVYK--------VLSANDYFTDMESYN 404 (556)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~ll~~--~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~ 404 (556)
+..+++..|...+..+.+.... |+ ...+...+.+ +...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 4467888898888888754321 11 1222222222 345799999999997 444555554444443
Q ss_pred HH----HHHHHhcCCHHH--HHHHHHHHHHC---CCCCCHhHH-HHHHHHHhhcCC--hhhHHHHHHHHHHc---CCCCC
Q 008727 405 VM----VSFLCTSGRLRE--AYGVIQEMKRK---GLDPDVSFY-NSLMEACCREDL--LRPAKKLWDQMFAS---GCSGN 469 (556)
Q Consensus 405 ~l----i~~~~~~~~~~~--a~~~~~~m~~~---~~~p~~~~~-~~ll~~~~~~~~--~~~a~~~~~~~~~~---~~~~~ 469 (556)
.+ |.-+......++ +.++++.+... ....+..++ ..++.++..... ..++...+.+..+. ....+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 32 111112222333 66666655442 111223333 333444432222 12444433332221 11111
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-C--CHhhHHHH-----HHHHHccCCHHHHHHHHHHhh
Q 008727 470 ---LKTYNILISKFSEVGEIEGALRLFHNMLEKGVA-P--DATTYTSL-----LEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 470 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p--~~~~~~~l-----~~~~~~~g~~~~a~~~~~~m~ 532 (556)
..+++.+...+. .|+..+..+.........-+ | ....|..+ ...+...|+.++|.+...+..
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 223343444444 78887766665554332111 2 33445333 334677899999998887654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.08 E-value=2.8 Score=23.39 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
.+|..+...|...|++++|+..|++.++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4577788888888899999988888877654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.83 E-value=28 Score=30.93 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=73.9
Q ss_pred ChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CC--CccHhhHHHHHHHHHhcCCH
Q 008727 345 DPRSAIVFFNFMIEKGRVPT---LSTLSNLSKNLCKRNKSDELVEVYKVLSAN---DY--FTDMESYNVMVSFLCTSGRL 416 (556)
Q Consensus 345 ~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~--~~~~~~~~~li~~~~~~~~~ 416 (556)
.+++|+.-|++..+....-. ......++....+.|++++..+.+.++... .+ .-+..+.|+++.......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45556655555544322111 223344556666667777666666655421 00 11333556666555544444
Q ss_pred HHHHHHHHHHHH----C-CCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCC----CC-------CHHHHHHHHHHH
Q 008727 417 REAYGVIQEMKR----K-GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC----SG-------NLKTYNILISKF 480 (556)
Q Consensus 417 ~~a~~~~~~m~~----~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~-------~~~~~~~li~~~ 480 (556)
+-..++++.-.+ . +-+.-..|-+.|...|...+++.+..++++++..+-- .. -...|..=|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 444443332111 1 0011112334455556666666666666666543310 11 134455556666
Q ss_pred HccCCHHHHHHHHHHHHH
Q 008727 481 SEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~ 498 (556)
..+.+-.+-..++++.+.
T Consensus 202 T~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALH 219 (440)
T ss_pred hhhcccHHHHHHHHHHHH
Confidence 666666666666665543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.54 E-value=9.1 Score=32.42 Aligned_cols=73 Identities=12% Similarity=0.020 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCCHHHHH
Q 008727 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS---GCSGNLKTYNILISKFSEVGEIEGAL 490 (556)
Q Consensus 417 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~ 490 (556)
+.|.+.|-++...+.--++.....|...|. ..|.+++..++-+..+. +-.+|+..+.+|++.|.+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445555555555544434444444444443 45566666666665543 22456666666777776666666653
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.09 E-value=10 Score=32.50 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=22.6
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHH
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 216 (556)
+.+.+.+..++++.+.++-.+.. +.|..+-..+++.+|-.|+|++|...++-.-
T Consensus 9 seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 33444444444444444433332 1133333344444444444444444444433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.86 E-value=2.7 Score=24.73 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=15.8
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008727 155 EICNSLLAVLASDGYIDNALKMFDEMS 181 (556)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (556)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 355666666666666666666666554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.79 E-value=3.2 Score=23.05 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=17.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 472 TYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.|..+...|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666666667777777766666543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.73 E-value=9.5 Score=32.63 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCC--CCChHhHHHHHHH
Q 008727 87 YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCE--DIGPEICNSLLAV 163 (556)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~ 163 (556)
.+..++.+.+.+...+++...++-.+.. |.+......++..++-.|++++|..-++....... .+....|..+|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566666777777777666655544 44556666677777777777777766665544322 2233455555553
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=83.24 E-value=42 Score=31.82 Aligned_cols=66 Identities=6% Similarity=0.045 Sum_probs=47.9
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP---DVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (556)
...+|..+...+.+.|.++.|...+..+...+... ++.....-....-..|+..+|...++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45578888888899999999999998888754221 2333444455666778889999988888873
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.86 E-value=30 Score=29.76 Aligned_cols=163 Identities=13% Similarity=0.035 Sum_probs=93.5
Q ss_pred CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHH
Q 008727 292 VAPRTN-DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV-PTLSTLS 369 (556)
Q Consensus 292 ~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 369 (556)
+.|+.. .||-+---+...|+++.|.+.|+...+..+..+-...|..+..|-.|+++-|.+-|...-+.+.. |-...|.
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 445443 56666667778899999999999999988888888888888888889999888877777665533 2122222
Q ss_pred HHHHHHHhcCChHHHHHHH-HHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HhHHHHH
Q 008727 370 NLSKNLCKRNKSDELVEVY-KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD-------VSFYNSL 441 (556)
Q Consensus 370 ~ll~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-------~~~~~~l 441 (556)
-+. -..-++.+|..-+ ++.... |..-|...|..|.- |++. ...+++++... -.-+ ..||..+
T Consensus 174 Yl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 174 YLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHH
Confidence 221 1223444444333 333332 44455444443322 1111 11223333221 1111 2456666
Q ss_pred HHHHhhcCChhhHHHHHHHHHHc
Q 008727 442 MEACCREDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~ 464 (556)
..-+...|+.++|..+|+-.+..
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHH
Confidence 66666667777777666666543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.33 E-value=51 Score=32.06 Aligned_cols=133 Identities=6% Similarity=-0.141 Sum_probs=82.6
Q ss_pred HHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008727 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278 (556)
Q Consensus 199 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 278 (556)
....||+-.|-+-+....++....|.-.. .....+...|+++.+...+....+. +.....+...+++...+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~---l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQ---LRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhH---HHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 34557776665555554444233333222 2233456778999988888765443 3345667888888888999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHH
Q 008727 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336 (556)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (556)
+|..+-..|+...++ ++........+.-..|-++++...++++...+++.+....|.
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~ 431 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNF 431 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceee
Confidence 999988888876654 222232223334445677888888888777665555444443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.23 E-value=44 Score=31.33 Aligned_cols=118 Identities=8% Similarity=0.118 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCHHHHHHHH
Q 008727 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE---VGEIEGALRLF 493 (556)
Q Consensus 417 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~ 493 (556)
+.-+.++++..+.+. -+.......+..+.+..+.++..+.|+++.... +-+...|...+..... .-.+++...+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 344555555555533 244455555666666666666666666666542 2245555555544333 22344555544
Q ss_pred HHHHHC------CC----CCCHh-------hHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 494 HNMLEK------GV----APDAT-------TYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 494 ~~m~~~------g~----~p~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
.+.++. |. .+-.. .+..+..-+..+|..+.|+.+++.+++.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 444331 11 00011 122222333556777777777777777664
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=82.04 E-value=68 Score=33.36 Aligned_cols=69 Identities=9% Similarity=0.028 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCC-------hHHHHHHHHHHHhCCCCCChH
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN-------TQKAFSVFNEVKFNCEDIGPE 155 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~ 155 (556)
..| .+|-.|.|.|++++|.++..+.... .......+...+..|....+ -++...-|.+..+...+.|+.
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 344 5677788999999999988555443 34455667777788776532 335666666665554332443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=80.90 E-value=76 Score=33.16 Aligned_cols=58 Identities=7% Similarity=-0.037 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 496 (556)
...-++.-...++++.+...+..|.... .-...-.--+..++...|+.++|...|+.+
T Consensus 315 ~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 315 LERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333444445666666666666654322 112222233445555566666666666665
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=80.71 E-value=76 Score=33.05 Aligned_cols=431 Identities=13% Similarity=0.054 Sum_probs=213.8
Q ss_pred hHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHH-hcCChhHHHHHHHHhHhCCCCCCH-----HhHHHHHHHHHcCCChH
Q 008727 65 SLALGFFNWASQQPNFTHSP--LSYHSILKSLS-LSRQINAIDSVLKQVKVNKITLDS-----SVYRFIIPSLIQGKNTQ 136 (556)
Q Consensus 65 ~~a~~~f~~~~~~~~~~~~~--~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~ 136 (556)
..|++.++-+.++...+|.. .++-.+...+. ...+++.|+..+++.....-.++- .....+++.+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 35777777776665555543 33445566665 688999999999876543322221 12334556666666655
Q ss_pred HHHHHHHHHHhCCCC----CChHhHHHH-HHHHHhcCCHhHHHHHHHHHHhCC---CccChhhHHHHHHHHH--hhCcHH
Q 008727 137 KAFSVFNEVKFNCED----IGPEICNSL-LAVLASDGYIDNALKMFDEMSHRG---VEFSTIGFGVFIWKFC--ENAKLG 206 (556)
Q Consensus 137 ~a~~~~~~~~~~~~~----~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~--~~g~~~ 206 (556)
|....++..+.--. +-...+..+ +..+...+++..|.+.++.+...- ..|...++..++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888876543111 122233333 333334478999999988876532 2333444444444443 345566
Q ss_pred HHHHHHHHHHhc-------cCCCCCchhhHHHHHHHH--hccCCHHHHHHHHHHHhh-------CC----------C--C
Q 008727 207 QVLSMLDEVRKR-------ENSMINGSVIAVLIIHGF--CKGKRVEEAFKVLDELRI-------RE----------C--K 258 (556)
Q Consensus 207 ~a~~~~~~~~~~-------~~~~~~~~~~~~~li~~~--~~~~~~~~A~~~~~~m~~-------~~----------~--~ 258 (556)
.+.+.++.+... +...++...+|..+++.+ ...|+++.+...++++.+ .. + .
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~ 276 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN 276 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence 676666666322 111334455565555554 456776666665555432 10 0 0
Q ss_pred -----------CCH---------HHHHHHHHH--HHhcCCHHHHHHHHHH-------HH-hcCCCCCh--------hhHH
Q 008727 259 -----------PDF---------IAYRIVAEE--FKLMGSVFEREVVLKK-------KR-KLGVAPRT--------NDYR 300 (556)
Q Consensus 259 -----------p~~---------~~~~~ll~~--~~~~~~~~~a~~~~~~-------~~-~~~~~~~~--------~~~~ 300 (556)
|.. ....-++.+ .+..+..+++.+++++ .. .....+.. ..+.
T Consensus 277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~ 356 (608)
T PF10345_consen 277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWL 356 (608)
T ss_pred cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHH
Confidence 111 111222332 2233444455555544 33 11111111 1111
Q ss_pred HHHH---------HHHhcCCHHHHHHHHHHHHcCCCCC------CHHHHHHHH---HHHhcCChhHHHHHHH--------
Q 008727 301 EFIL---------GLIVERRICEAKELGEVIVSGKFTI------DDDVLNALI---GSVSSIDPRSAIVFFN-------- 354 (556)
Q Consensus 301 ~ll~---------~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~---~~~~~~~~~~a~~~~~-------- 354 (556)
..+. ..+-.+++..+...++.+.+..... ....+...+ ..-..|+.+.|...|.
T Consensus 357 ~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~ 436 (608)
T PF10345_consen 357 RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCE 436 (608)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhh
Confidence 1111 2334688888998888877542211 111222222 2234689999999997
Q ss_pred HHHHcCCCCCHHHHHHH--HHHHH--hcCChHH--HHHHHHHHHh---CCCCccHhhHHHHH-HHHHhcC--CHHHHHHH
Q 008727 355 FMIEKGRVPTLSTLSNL--SKNLC--KRNKSDE--LVEVYKVLSA---NDYFTDMESYNVMV-SFLCTSG--RLREAYGV 422 (556)
Q Consensus 355 ~~~~~~~~~~~~~~~~l--l~~~~--~~g~~~~--a~~~~~~~~~---~~~~~~~~~~~~li-~~~~~~~--~~~~a~~~ 422 (556)
.....+...+..++..+ +-.+. .....++ +.++++.+.. .....+..+++.++ .++.... ...++...
T Consensus 437 ~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~ 516 (608)
T PF10345_consen 437 AANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRH 516 (608)
T ss_pred hhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHH
Confidence 44555555555555442 11222 2222333 6667766554 22222344444444 3332221 12244444
Q ss_pred HHHHHHCC--CCCC----HhHHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCC--CHHHHH-----HHHHHHHccCCHHH
Q 008727 423 IQEMKRKG--LDPD----VSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSG--NLKTYN-----ILISKFSEVGEIEG 488 (556)
Q Consensus 423 ~~~m~~~~--~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~--~~~~~~-----~li~~~~~~g~~~~ 488 (556)
+.+-.+.- ...+ ..+++.+...+. .|+..+..+........ .-.| ....|. .+...|-..|+.++
T Consensus 517 l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~k 595 (608)
T PF10345_consen 517 LQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDK 595 (608)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHH
Confidence 43322110 1112 122333333333 67777765555443321 1122 334453 34455778899999
Q ss_pred HHHHHHHHH
Q 008727 489 ALRLFHNML 497 (556)
Q Consensus 489 A~~~~~~m~ 497 (556)
|.....+..
T Consensus 596 a~~~~~~~~ 604 (608)
T PF10345_consen 596 AEEARQQLD 604 (608)
T ss_pred HHHHHHHHH
Confidence 999888765
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.9 bits (196), Expect = 9e-16
Identities = 85/548 (15%), Positives = 169/548 (30%), Gaps = 169/548 (30%)
Query: 63 HHSLALGFFNWASQQPNFTHSPLSYHSIL--------KSLSLSRQINAIDSVLKQVKVNK 114
HH + F Q Y IL + + S+L + +++
Sbjct: 4 HHHMD---FETGEHQ-------YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH 53
Query: 115 I----TLDSSVYRFIIPSLIQGKNTQKAFSVFNEV----------KFNCEDIGPEICNSL 160
I S R L + + + F EV E P
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPS----- 106
Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
+ + YI+ +++++ F+ + + KL Q L E+R +N
Sbjct: 107 ---MMTRMYIEQRDRLYND----NQVFAKY----NVSRLQPYLKLRQALL---ELRPAKN 152
Query: 221 SMINGSVIAVLIIHGF--CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
++I G GK A V ++ +CK DF + + + +
Sbjct: 153 ----------VLIDGVLGS-GKTW-VALDVCLSYKV-QCKMDFKIFWLN------LKNCN 193
Query: 279 EREVVLKKKRKL----------------GVAPRTNDYREFILGLIVERRICEAKELGEVI 322
E VL+ +KL + R + + + L+ + L ++
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--L--LV 249
Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS- 381
+ +V NA + FN L T R K
Sbjct: 250 L-------LNVQNAKA-----WNA------FNL-----SCKILLT---------TRFKQV 277
Query: 382 -DEL-VEVYKVLSANDY---FTDMESYNVMVSFL-CTSGRLRE--------AYGVIQEMK 427
D L +S + + T E ++++ +L C L +I E
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 428 RKGLD-------PDVSFYNSLMEACCREDLLRPA--KKLWDQM--FASGCSGNLKTYNIL 476
R GL + +++E+ ++L PA +K++D++ F +++
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSL--NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 477 --ISKFSEVGEIEGALRLFHN--MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
S+V + + H ++EK P +T + + + E ++ N+
Sbjct: 396 WFDVIKSDVMVV---VNKLHKYSLVEKQ--PKESTIS--IPSIYLELKVKLE----NEYA 444
Query: 533 NHDVMLAR 540
H ++
Sbjct: 445 LHRSIVDH 452
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 4e-05
Identities = 59/381 (15%), Positives = 106/381 (27%), Gaps = 129/381 (33%)
Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECK--PDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289
I+ F E+AF D +CK D + EE +++ K
Sbjct: 21 ILSVF------EDAFV--DNF---DCKDVQDMPKSILSKEEID--------HIIMSKDAV 61
Query: 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSA 349
G R + ++ ++ +E+ + V I+ L + I P
Sbjct: 62 SGT------LR--LFWTLLSKQ----EEMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMM 108
Query: 350 IVFF----------NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY------K-VLS 392
+ N + K V L L + L + + + V + K ++
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVA 167
Query: 393 ANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452
+ V K + F+ +L E +L
Sbjct: 168 LD---------------------------VCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR-LFH-----NML--------- 497
+KL Q+ + S + + NI + I+ LR L N L
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNI----KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 498 -----------------EKGVA----PDATTYTSL---LEGLCQETNLQAAFEVFNKSVN 533
K V TT+ SL L + + K ++
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK----SLLLKYLD 312
Query: 534 HDV-MLARSILST--FMISLC 551
L R +L+T +S+
Sbjct: 313 CRPQDLPREVLTTNPRRLSII 333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 78.3 bits (191), Expect = 3e-15
Identities = 19/142 (13%), Positives = 50/142 (35%), Gaps = 3/142 (2%)
Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD---QMFASGCSGNLK 471
L + + L + + C D L A L L
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
YN ++ ++ G + + + + + G+ PD +Y + L+ + ++ E +
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 532 VNHDVMLARSILSTFMISLCRR 553
++ + + +++ + ++S R
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDR 248
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 73.3 bits (178), Expect = 1e-13
Identities = 31/271 (11%), Positives = 84/271 (30%), Gaps = 12/271 (4%)
Query: 279 EREVVLKKKRKL----GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK----FTID 330
++ + ++L + ++ +++ L VE R+ + G + + +
Sbjct: 33 DKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWE 92
Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR---NKSDELVEV 387
+ + L + + + L K + L+ V
Sbjct: 93 EQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVV 152
Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
+ ++ YN ++ G +E V+ +K GL PD+ Y + ++ R
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212
Query: 448 -EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
+ ++ +QM G +L+S+ ++ ++ P
Sbjct: 213 QDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPV 272
Query: 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537
+ LL + + + ++ +
Sbjct: 273 NTSKLLRDVYAKDGRVSYPKLHLPLKTLQCL 303
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 556 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.8 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.59 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.59 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.59 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.59 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.58 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.58 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.54 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.52 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.52 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.51 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.51 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.51 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.5 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.49 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.45 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.44 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.42 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.42 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.41 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.39 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.36 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.36 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.28 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.27 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.25 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.24 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.24 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.21 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.21 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.17 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.15 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.15 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.12 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.11 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.02 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.01 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.01 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.0 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.97 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.97 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.96 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.93 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.91 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.9 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.9 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.9 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.89 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.89 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.87 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.86 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.86 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.85 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.85 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.83 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.83 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.82 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.81 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.79 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.77 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.77 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.67 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.62 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.6 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.59 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.58 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.57 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.57 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.57 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.56 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.56 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.55 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.53 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.53 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.51 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.51 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.5 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.49 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.49 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.48 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.48 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.46 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.46 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.45 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.45 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.44 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.43 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.42 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.41 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.36 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.35 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.35 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.34 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.33 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.33 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.33 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.33 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.32 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.31 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.3 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.28 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.25 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.25 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.25 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.23 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.22 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.22 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.2 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.2 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.15 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.13 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.13 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.12 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.12 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.09 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.09 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.06 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.04 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.02 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.0 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.99 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.99 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.98 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.96 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.95 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.89 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.87 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.87 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.87 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.87 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.85 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.83 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.81 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.75 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.67 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.66 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.63 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.6 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.57 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.54 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.52 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.5 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.5 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.48 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.41 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.35 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.34 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.3 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.08 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.04 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.01 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.73 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.65 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.55 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.52 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.33 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.31 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.3 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.24 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.17 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.17 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.06 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.06 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.83 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.74 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.65 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.59 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.57 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.36 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.32 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.3 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.13 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.96 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.88 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.1 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 94.06 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.3 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.01 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.73 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.71 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.56 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.45 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.37 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.01 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 90.87 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.61 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.32 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.21 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.13 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.96 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.35 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.62 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 87.01 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 87.0 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.68 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 84.8 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.77 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.05 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 83.99 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.82 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=326.19 Aligned_cols=449 Identities=9% Similarity=-0.041 Sum_probs=389.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
++...|+.++..+.+.|++++|..+|+++... .|+..++..++..|.+.|++++|..+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 57888999999999999999999999999864 578899999999999999999999999998543 56889999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHh-C--------------CCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCch
Q 008727 162 AVLASDGYIDNALKMFDEMSH-R--------------GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~-~--------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 226 (556)
.+|.+.|++++|.++|+++.. . +..++..+|..++.+|.+.|++++|++.|+++.+. .|.+.
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~ 234 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV---DAKCY 234 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---Cchhh
Confidence 999999999999999995322 2 23446789999999999999999999999999877 33333
Q ss_pred hhHHH--------------------------------------HHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008727 227 VIAVL--------------------------------------IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268 (556)
Q Consensus 227 ~~~~~--------------------------------------li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 268 (556)
..+.. ++..|.+.|++++|.++|+++.+. .++..+++.++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 33332 356677889999999999999875 57999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChh
Q 008727 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPR 347 (556)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 347 (556)
..|.+.|++++|.++|+++.+.+.. +..++..++.++.+.|+.++|.++++.+.+.. +.+..+++.+...+. .|+++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999987643 67789999999999999999999999998654 446777777777655 68999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427 (556)
Q Consensus 348 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 427 (556)
+|.++|+++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.++. +..+|+.++.+|.+.|++++|.++|+++.
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998754 336789999999999999999999999999987654 78899999999999999999999999999
Q ss_pred HCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 008727 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS----GCSGN--LKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501 (556)
Q Consensus 428 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 501 (556)
+.... +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.|+++.+.+
T Consensus 469 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 546 (597)
T 2xpi_A 469 ALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS- 546 (597)
T ss_dssp HHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 87543 7899999999999999999999999999876 66787 7899999999999999999999999999875
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHH
Q 008727 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546 (556)
Q Consensus 502 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 546 (556)
+.+..+|..+..+|.+.|++++|.++++++.+.++.. ...+..+
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l 590 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE-IMASDLL 590 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-hHHHHHH
Confidence 3378999999999999999999999999999987653 3334333
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=308.85 Aligned_cols=442 Identities=12% Similarity=0.002 Sum_probs=367.5
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHH
Q 008727 96 LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALK 175 (556)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 175 (556)
..+.+..+...+..+. .++...|+.++..|.+.|++++|..+|+++... .|+..+++.++.+|.+.|++++|..
T Consensus 65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3455555555554332 257889999999999999999999999999854 5577899999999999999999999
Q ss_pred HHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhcc-------------CCCCCchhhHHHHHHHHhccCCH
Q 008727 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE-------------NSMINGSVIAVLIIHGFCKGKRV 242 (556)
Q Consensus 176 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~~~~~~~~li~~~~~~~~~ 242 (556)
+|+.+... .++..+++.++.+|.+.|++++|.++|+++.... ...+.+..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988653 5788899999999999999999999998533220 01234578899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHH--------------------------------------HHHHHHhcCCHHHHHHHH
Q 008727 243 EEAFKVLDELRIRECKPDFIAYRI--------------------------------------VAEEFKLMGSVFEREVVL 284 (556)
Q Consensus 243 ~~A~~~~~~m~~~~~~p~~~~~~~--------------------------------------ll~~~~~~~~~~~a~~~~ 284 (556)
++|.++|++|.+.+.. +...+.. ++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999999876422 2333322 345566789999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCC
Q 008727 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVP 363 (556)
Q Consensus 285 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~ 363 (556)
+++.+. .++..++..++..+.+.|++++|.++|+.+.+.++. +..+++.+...+. .|+.++|..+++++.+.. +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 998876 578889999999999999999999999999977644 5666777776654 699999999999998654 45
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 008727 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443 (556)
Q Consensus 364 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 443 (556)
+..++..++..|.+.|++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|+++|+++.+.+. .+..+|+.++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHH
Confidence 7889999999999999999999999999886543 688999999999999999999999999998754 37889999999
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC--HhhHHHHHHHHHc
Q 008727 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK----GVAPD--ATTYTSLLEGLCQ 517 (556)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~ 517 (556)
+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999875 567899999999999999999999999999876 77888 7899999999999
Q ss_pred cCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhh
Q 008727 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRV 554 (556)
Q Consensus 518 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 554 (556)
.|++++|.++++++.+.++ .+...+..+..+|++.|
T Consensus 529 ~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLST-NDANVHTAIALVYLHKK 564 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhC
Confidence 9999999999999998874 36788888888888876
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=266.18 Aligned_cols=205 Identities=15% Similarity=0.167 Sum_probs=146.1
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCC---------HHH
Q 008727 349 AIVFFNFMIEKGRVPTL-STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR---------LRE 418 (556)
Q Consensus 349 a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~~~ 418 (556)
+..+.+.+.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555555554443 34667777777777777777777777777777777777777777776543 567
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 419 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhh
Q 008727 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553 (556)
Q Consensus 499 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 553 (556)
.|+.||..||++||.+|++.|++++|.+++++|.+.+..|+..++..++..||..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 7777777777777777777777777777777777777777777777777777654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-31 Score=262.15 Aligned_cols=213 Identities=14% Similarity=0.153 Sum_probs=128.7
Q ss_pred HHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 008727 246 FKVLDELRIRECKPDF-IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324 (556)
Q Consensus 246 ~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (556)
..+.+++.+++..+.. ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|.+.+....+
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------- 80 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------- 80 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---------
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh---------
Confidence 3344444444433322 235555556666666666666666665556655555555555555544432110
Q ss_pred CCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHH
Q 008727 325 GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404 (556)
Q Consensus 325 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 404 (556)
...++.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 0011235566667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 008727 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483 (556)
Q Consensus 405 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 483 (556)
++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777777666653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-26 Score=222.86 Aligned_cols=361 Identities=12% Similarity=0.022 Sum_probs=215.4
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 170 (556)
...+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 455667888888888888877754 4556667777777888888888888888877654 33677888888888888888
Q ss_pred hHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHH
Q 008727 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250 (556)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 250 (556)
++|.+.|+++.+.. +.+..+|..+...+...|++++|.+.|+.+... .|.....+..+...+...|++++|.+.|+
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88888888887653 123456777788888888888888888888766 55666677777778888888888888888
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 008727 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330 (556)
Q Consensus 251 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (556)
++.+.. +.+..+|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...+
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~----------- 226 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAY----------- 226 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHH-----------
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHH-----------
Confidence 877652 224567777777777777777777777777664221 1222333333333333333333322
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHH
Q 008727 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410 (556)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 410 (556)
++..... +.+..++..+...+.+.|++++|.+.|+++.+.++. +..+|..+...+
T Consensus 227 -----------------------~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 281 (388)
T 1w3b_A 227 -----------------------LRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANAL 281 (388)
T ss_dssp -----------------------HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHH
T ss_pred -----------------------HHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 2222211 112334444444455555555555555555444322 334445555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 008727 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490 (556)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 490 (556)
.+.|++++|.+.++++.+... .+..++..+...+...|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|.
T Consensus 282 ~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555444321 234444455555555555555555555544431 223444444555555555555555
Q ss_pred HHHHHHH
Q 008727 491 RLFHNML 497 (556)
Q Consensus 491 ~~~~~m~ 497 (556)
+.|+++.
T Consensus 360 ~~~~~a~ 366 (388)
T 1w3b_A 360 MHYKEAI 366 (388)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-26 Score=222.18 Aligned_cols=378 Identities=14% Similarity=0.046 Sum_probs=295.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcH
Q 008727 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205 (556)
Q Consensus 126 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 205 (556)
...+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 45567788888888888888776433 56677778888888888888888888877653 34667788888888888888
Q ss_pred HHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 008727 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD-FIAYRIVAEEFKLMGSVFEREVVL 284 (556)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 284 (556)
++|++.|+++... .|.....+..+...+.+.|++++|.+.|+++.+.. |+ ...+..+...+...|++++|.+.|
T Consensus 84 ~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 84 QEAIEHYRHALRL---KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHc---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 8888888888766 56666777788888888888888888888877653 33 345666667777778888888888
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 008727 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT 364 (556)
Q Consensus 285 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 364 (556)
+++.+.... +..++..+...+...|++++|...++.+. +.+ +.+
T Consensus 159 ~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------------------------~~~-p~~ 202 (388)
T 1w3b_A 159 LKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAV----------------------------------TLD-PNF 202 (388)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH----------------------------------HHC-TTC
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------------------hcC-CCc
Confidence 877765321 23455566666666666666665555544 332 224
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 444 (556)
...+..+...+...|++++|...+++..+..+. +..++..+...|...|++++|.+.++++.+.+.. +..+|..+..+
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 280 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANA 280 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 567778888899999999999999998886544 6789999999999999999999999999987543 57789999999
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHH
Q 008727 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 524 (556)
+.+.|++++|.+.++++.+.. +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...|.+.|++++|
T Consensus 281 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999874 6788999999999999999999999999998652 33577899999999999999999
Q ss_pred HHHHHHhhhCCCcccHHHHHHHHHHHh
Q 008727 525 FEVFNKSVNHDVMLARSILSTFMISLC 551 (556)
Q Consensus 525 ~~~~~~m~~~~~~~~~~~~~~l~~~~~ 551 (556)
.+.++++.+..+.. ...+..+-..+.
T Consensus 359 ~~~~~~a~~~~p~~-~~a~~~lg~~~~ 384 (388)
T 1w3b_A 359 LMHYKEAIRISPTF-ADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHHHHTTCTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCC-HHHHHhHHHHHH
Confidence 99999999877653 334444444443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-22 Score=203.99 Aligned_cols=409 Identities=11% Similarity=0.033 Sum_probs=223.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 008727 84 PLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163 (556)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 163 (556)
...|......+.+.|++++|...|+++.+.+ |+...+..+..++.+.|++++|+..++++.+..+. +..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 3456677788888999999999999988875 68888888999999999999999999998876543 67788899999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhcc------------------CCC---
Q 008727 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE------------------NSM--- 222 (556)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------------------~~~--- 222 (556)
+.+.|++++|...|+++.+.+. ++......++..+........+.+.+..+.... ...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999888763 344444444444444433333333332211110 000
Q ss_pred ---------------------CCchhhHHHHHHHHhc---cCCHHHHHHHHHHHhh-----CCCC--------CCHHHHH
Q 008727 223 ---------------------INGSVIAVLIIHGFCK---GKRVEEAFKVLDELRI-----RECK--------PDFIAYR 265 (556)
Q Consensus 223 ---------------------~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~-----~~~~--------p~~~~~~ 265 (556)
+.+...+......+.. .|++++|.+.|+++.+ ..-. .+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1112222222222222 4555555555555444 1001 1123344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCC
Q 008727 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345 (556)
Q Consensus 266 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 345 (556)
.+...+...|++++|...++++.+.... ...+..+...+...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~---------------------------------- 285 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRND---------------------------------- 285 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSC----------------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCC----------------------------------
Confidence 4444444455555555555544443322 3334444444444444
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008727 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425 (556)
Q Consensus 346 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 425 (556)
+++|...++...+... .+...+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|...+++
T Consensus 286 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 363 (514)
T 2gw1_A 286 STEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSE 363 (514)
T ss_dssp CTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555544444321 13344455555555555555555555555554333 344555555555555555555555555
Q ss_pred HHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHc---cCCHHHHHHHHHHHH
Q 008727 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC-SGN----LKTYNILISKFSE---VGEIEGALRLFHNML 497 (556)
Q Consensus 426 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~ 497 (556)
+.+.... +..++..+...+...|++++|.+.++++.+..- .++ ...|..+..+|.. .|++++|.+.++++.
T Consensus 364 ~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 364 AKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp HHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred HHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 5544221 344555555555555555555555555554310 111 2255555555555 555666666555555
Q ss_pred HCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 498 ~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
+.. +.+..++..+...|.+.|++++|.+.++++.+.++
T Consensus 443 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 443 KLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 432 11344455555555555666666666655555443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-22 Score=201.70 Aligned_cols=424 Identities=10% Similarity=-0.031 Sum_probs=295.2
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHH
Q 008727 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198 (556)
Q Consensus 119 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 198 (556)
...+..+...+.+.|++++|+..|+++.... |+..+|..+..++.+.|++++|.+.|+++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4566777888899999999999999998875 588899999999999999999999999998865 2355688888899
Q ss_pred HHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008727 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278 (556)
Q Consensus 199 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 278 (556)
+...|++++|...|+.+... .|.+......++..+........+.+.+..+...+..|+...+..-...........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLN---GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHS---SSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC
T ss_pred HHHHhhHHHHHHHHHHHHhc---CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 99999999999999999877 233333334444444443333444443433322222222221111111111111111
Q ss_pred HHHHHHHHHHhcCCC--------CC-hhhHHHHHHHHHh---cCCHHHHHHHHHHHHc-----C--CCC------CCHHH
Q 008727 279 EREVVLKKKRKLGVA--------PR-TNDYREFILGLIV---ERRICEAKELGEVIVS-----G--KFT------IDDDV 333 (556)
Q Consensus 279 ~a~~~~~~~~~~~~~--------~~-~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~--~~~------~~~~~ 333 (556)
....+...+...... |+ ...+......+.. .|++++|...++.+.+ . .+. .+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 111111111111111 11 2233333333443 7888888888888776 3 111 12233
Q ss_pred HHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHh
Q 008727 334 LNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412 (556)
Q Consensus 334 ~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 412 (556)
+..+... +..|++++|...|+++.+.... ...+..+...+...|++++|...++.+.+..+. +...+..+...|..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHH
Confidence 4333333 4578999999999999887644 888888999999999999999999999887654 67789999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 008727 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492 (556)
Q Consensus 413 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 492 (556)
.|++++|...+++..+.... +..++..+...+...|++++|.+.++++.+.. +.+...|..+...|...|++++|.+.
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999987544 67789999999999999999999999999864 45678899999999999999999999
Q ss_pred HHHHHHCCCC-CC----HhhHHHHHHHHHc---cCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhh
Q 008727 493 FHNMLEKGVA-PD----ATTYTSLLEGLCQ---ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRV 554 (556)
Q Consensus 493 ~~~m~~~g~~-p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 554 (556)
++++.+.... ++ ...+..+...+.. .|++++|.+.++++.+.++. +...+..+...|.+.|
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQE 463 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhc
Confidence 9999865211 11 3378889999999 99999999999999887754 3455666667666654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-21 Score=194.50 Aligned_cols=439 Identities=10% Similarity=0.002 Sum_probs=261.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 008727 84 PLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163 (556)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 163 (556)
...|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...|.+.|++++|++.|+++.+..+. +..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 4566777888889999999999999988875 567888999999999999999999999998877544 77889999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHH
Q 008727 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243 (556)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 243 (556)
+...|++++|.+.|+.+ ... |+. ....+..+...+....|...++.+....+............+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999999999633 322 221 1222345556666778888888876531111111111122333444455555
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHH-HHHHHHh--------cCCHHHHHHHHHHHHhcCCCCC------hhhHHHHHHHHHh
Q 008727 244 EAFKVLDELRIRECKPDFIAYRI-VAEEFKL--------MGSVFEREVVLKKKRKLGVAPR------TNDYREFILGLIV 308 (556)
Q Consensus 244 ~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~ 308 (556)
.+...+...... .+....+.. +...+.. .|++++|..+++++.+...... ...+..+...+..
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 544443332221 222221211 2111111 1356666666666655422210 1124444455666
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008727 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387 (556)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 387 (556)
.|++++|...++.+.+..+. ...+..+...+ ..|++++|...+++..+... .+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 66777777777666665433 33443333333 34667777777776665542 2456666666777777777777777
Q ss_pred HHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcC--
Q 008727 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG-- 465 (556)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-- 465 (556)
++.+.+..+. +...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.+.++++.+..
T Consensus 333 ~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 7776665433 4556667777777777777777777777665322 45566667777777777777777777766532
Q ss_pred ---CCCCHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 466 ---CSGNLKTYNILISKFSEV----------GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 466 ---~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
.......+..+..++... |++++|...|+++.+.. +.+...+..+...|.+.|++++|.+.|+++.
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 011122233444556666 77777777777776542 2245666667777777777777777777776
Q ss_pred hCCCc
Q 008727 533 NHDVM 537 (556)
Q Consensus 533 ~~~~~ 537 (556)
+..+.
T Consensus 490 ~~~~~ 494 (537)
T 3fp2_A 490 ILART 494 (537)
T ss_dssp HHC--
T ss_pred HhCCC
Confidence 65543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-21 Score=189.37 Aligned_cols=207 Identities=13% Similarity=-0.076 Sum_probs=111.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
.+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+...+...|++++|...|+++.+.++. +..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 345556666666666666666666666666543 345666666666666666666666666666655432 455666666
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCccCh---hhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhc
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEFST---IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (556)
.+|.+.|++++|.+.|+++.+.+. .+. ..+..+...+.. ..+..+...+.+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-------------------------~~~~~~a~~~~~ 155 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEM-------------------------QRLRSQALNAFG 155 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHH-------------------------HHHHHHHHHHHH
Confidence 666666666666666666665431 112 333333322110 111123344555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008727 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318 (556)
Q Consensus 239 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 318 (556)
.|++++|.+.|+++.+.. +.+...+..+..++.+.|++++|.+.|+++.+... .+..++..+...+...|++++|.+.
T Consensus 156 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666665542 22455566666666666666666666665554311 1223333344444444444443333
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-21 Score=189.04 Aligned_cols=302 Identities=12% Similarity=0.033 Sum_probs=191.9
Q ss_pred hhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHH
Q 008727 58 PYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQK 137 (556)
Q Consensus 58 ~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 137 (556)
.+..+++..|+..|+.+.... +.+...|..+..++...|++++|...|+.+.+.+ +.+...+..+...|.+.|++++
T Consensus 36 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 36 LLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDE 112 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 344577999999999986543 3478899999999999999999999999999876 5678899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCh---HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHH
Q 008727 138 AFSVFNEVKFNCEDIGP---EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214 (556)
Q Consensus 138 a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 214 (556)
|.+.|+++....+. +. ..+..+...+... .+..+...+...|++++|+..|+.
T Consensus 113 A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 113 AEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp HHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999887543 44 6777776553211 111223345556666677766666
Q ss_pred HHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008727 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294 (556)
Q Consensus 215 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 294 (556)
+... .|.+..++..+...|.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|+..|+++.+. .|
T Consensus 169 ~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p 242 (450)
T 2y4t_A 169 ILEV---CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQ 242 (450)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHh---CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 6654 44555666667777777777777777777766542 225666777777777777777777777776653 22
Q ss_pred ChhhHHHH-------------HHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 008727 295 RTNDYREF-------------ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361 (556)
Q Consensus 295 ~~~~~~~l-------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 361 (556)
+....... ...+...| ++++|+..|+++.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------------------------------~~~~A~~~~~~~l~~~- 287 (450)
T 2y4t_A 243 DHKRCFAHYKQVKKLNKLIESAEELIRDG----------------------------------RYTDATSKYESVMKTE- 287 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHT----------------------------------CHHHHHHHHHHHHHHC-
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcC----------------------------------CHHHHHHHHHHHHhcC-
Confidence 22221111 22233333 3333333333333321
Q ss_pred CCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008727 362 VPT-----LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429 (556)
Q Consensus 362 ~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 429 (556)
|+ ...+..+...+.+.|++++|...++.+.+..+. +...|..+..+|...|++++|...++++.+.
T Consensus 288 -p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 288 -PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp -CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 11 224444555555666666666666655543322 4455556666666666666666666665553
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-20 Score=185.84 Aligned_cols=468 Identities=12% Similarity=0.025 Sum_probs=314.3
Q ss_pred HHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC
Q 008727 54 RVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133 (556)
Q Consensus 54 ~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 133 (556)
.....+..+++..|+..|+.+.... +.++..|..+..++.+.|++++|.+.++++.+.+ +.+...+..+...+...|
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 107 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLG 107 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcC
Confidence 3444445567889999999986654 3578899999999999999999999999999876 567889999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC------CccChhhHHHHHHHHHhhCcHHH
Q 008727 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG------VEFSTIGFGVFIWKFCENAKLGQ 207 (556)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~ 207 (556)
++++|...|+.+ .. ++...+..+..+...+...+|...++.+.... ..|+.. .+..+....+.+.
T Consensus 108 ~~~~A~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 108 NFTDAMFDLSVL-SL----NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFFGIFDSHL 178 (537)
T ss_dssp CHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHHHTSCHHH
T ss_pred CHHHHHHHHHHH-hc----CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHHHhcChHH
Confidence 999999999744 32 22222333455666667788999999986642 223322 3334555555555
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHhcc--------CCHHHHHHHHHHHhhCCCCCC--------HHHHHHHHHHH
Q 008727 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKG--------KRVEEAFKVLDELRIRECKPD--------FIAYRIVAEEF 271 (556)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~A~~~~~~m~~~~~~p~--------~~~~~~ll~~~ 271 (556)
+...+...... .+........+...+... |++++|.++|+++.+.. |+ ..++..+...+
T Consensus 179 ~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 179 EVSSVNTSSNY---DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHTSCCCCSS---CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccc---ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHH
Confidence 54443322211 222222333333333332 47888999998888763 33 23466666778
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HhcCChhHHH
Q 008727 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAI 350 (556)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~ 350 (556)
...|++++|...+++..+.. |+...+..+...+...|++++|.+.++.+.+..+. +..++..+... ...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHH
Confidence 88899999999999988864 44667778888888999999999999988876544 34444444444 5578999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008727 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430 (556)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 430 (556)
..|++..+.... +...+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|...++++.+..
T Consensus 331 ~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999999876532 4577888899999999999999999999886544 67789999999999999999999999987643
Q ss_pred CC-----CCHhHHHHHHHHHhhc----------CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 008727 431 LD-----PDVSFYNSLMEACCRE----------DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495 (556)
Q Consensus 431 ~~-----p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (556)
.. .....+......+... |++++|...++++.+.. +.+...+..+..+|.+.|++++|.+.|++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 11 1122344555677777 99999999999999874 55678899999999999999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhc
Q 008727 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRVL 555 (556)
Q Consensus 496 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 555 (556)
+.+.. |+.......+. +.++...-..+ +.++ ....-+..++..|-+.|.
T Consensus 488 al~~~--~~~~~~~~~~~-------~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~r~~~~ 536 (537)
T 3fp2_A 488 SAILA--RTMDEKLQATT-------FAEAAKIQKRL-RADP-IISAKMELTLARYRAKGM 536 (537)
T ss_dssp HHHHC----CHHHHHHHH-------HHHHHHHHHHH-HTC--------------------
T ss_pred HHHhC--CCcHHHHHHHh-------HHHHHHHHHhc-cccH-HHHHHHhhHHHHHhhccC
Confidence 99763 33322221111 23333443333 2332 234445556666666554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-17 Score=157.89 Aligned_cols=327 Identities=13% Similarity=0.004 Sum_probs=170.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
++..+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...|+++.+..+. +..+|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 34567777788888888888888888887765 456778888888888888888888888888776433 6678888888
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCc--cChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccC
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVE--FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 240 (556)
.+...|++++|.+.|++..+.... .+...+..+.... . ...+..+...+...|
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H------------------HHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H------------------HHHHHHHHHHHHHcc
Confidence 888888888888888888775420 1222332221000 0 001111233444445
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008727 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320 (556)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 320 (556)
++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. ..+...+..+...+...|++++|.+.++
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555444332 1233444444444555555555555555544432 1123334444444444555555544444
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccH
Q 008727 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400 (556)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 400 (556)
...+..+.. ...+ ..+..+. .......+...+.+.|++++|...++.+.+..+. +.
T Consensus 213 ~a~~~~~~~-~~~~----------------~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 268 (359)
T 3ieg_A 213 ECLKLDQDH-KRCF----------------AHYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VA 268 (359)
T ss_dssp HHHHHCTTC-HHHH----------------HHHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SH
T ss_pred HHHhhCccc-hHHH----------------HHHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ch
Confidence 443321110 0000 0000000 0011112233455555556665555555543322 11
Q ss_pred ----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 008727 401 ----ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463 (556)
Q Consensus 401 ----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 463 (556)
..+..+...+...|++++|...+++..+.... +..++..+...+...|++++|.+.|+++.+
T Consensus 269 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 12333444555555555555555555544211 344555555555555555555555555554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-17 Score=156.66 Aligned_cols=315 Identities=14% Similarity=0.088 Sum_probs=162.6
Q ss_pred hHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 008727 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233 (556)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 233 (556)
+..+..+...+...|++++|...|+++.+... .+..++..+...+...|++++|...++.+... .|.+...+..+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~ 78 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIAL---KMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCcchHHHHHH
Confidence 34444555555555555555555555544321 23344445555555555555555555555544 333445555556
Q ss_pred HHHhccCCHHHHHHHHHHHhhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 008727 234 HGFCKGKRVEEAFKVLDELRIRECKP----DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309 (556)
Q Consensus 234 ~~~~~~~~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 309 (556)
..+...|++++|.+.|++..+. .| +...+..+..... + ..+..+...+...
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-------~----------------~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-------M----------------QRLRSQALDAFDG 133 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHT
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHc
Confidence 6666666666666666665544 23 1112211111000 0 0011112233333
Q ss_pred CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008727 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389 (556)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 389 (556)
|++++|.+.++.+.+ .. +.+...+..+...+...|++++|...++
T Consensus 134 ~~~~~A~~~~~~~~~----------------------------------~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 178 (359)
T 3ieg_A 134 ADYTAAITFLDKILE----------------------------------VC-VWDAELRELRAECFIKEGEPRKAISDLK 178 (359)
T ss_dssp TCHHHHHHHHHHHHH----------------------------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH----------------------------------hC-CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 333333333333322 21 1233444555555556666666666666
Q ss_pred HHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH------------HHHHHHhhcCChhhHHHH
Q 008727 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN------------SLMEACCREDLLRPAKKL 457 (556)
Q Consensus 390 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~ll~~~~~~~~~~~a~~~ 457 (556)
.+.+..+. +...+..+...+...|++++|...+++..+.... +...+. .+...+...|++++|...
T Consensus 179 ~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 256 (359)
T 3ieg_A 179 AASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK 256 (359)
T ss_dssp HHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 65554432 4555666666666666666666666666554222 222221 224456667777777777
Q ss_pred HHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 458 WDQMFASGCSGNL----KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 458 ~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
++++.+.. +.+. ..+..+..+|...|++++|.+.+++..+.. +.+..+|..+...|.+.|++++|.+.++++.+
T Consensus 257 ~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 257 YESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77776643 1122 224445666777777777777777776542 22556666677777777777777777777766
Q ss_pred CCC
Q 008727 534 HDV 536 (556)
Q Consensus 534 ~~~ 536 (556)
.++
T Consensus 335 ~~p 337 (359)
T 3ieg_A 335 HNE 337 (359)
T ss_dssp TCT
T ss_pred cCC
Confidence 654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-17 Score=163.87 Aligned_cols=423 Identities=12% Similarity=0.067 Sum_probs=274.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
.+...|..++.. .+.|+++.|..+|+.+.+.. |.+...|...+..+.+.|++++|..+|++..... |+...|...+
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 367788888874 67788888888888888764 5677788888888888888888888888887763 4677777777
Q ss_pred HHH-HhcCCHhHHHH----HHHHHHh-CCCcc-ChhhHHHHHHHHHh---------hCcHHHHHHHHHHHHhccCCCCCc
Q 008727 162 AVL-ASDGYIDNALK----MFDEMSH-RGVEF-STIGFGVFIWKFCE---------NAKLGQVLSMLDEVRKRENSMING 225 (556)
Q Consensus 162 ~~~-~~~g~~~~a~~----~~~~m~~-~~~~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~ 225 (556)
... ...|+.++|.+ +|+.... .|..| +...|...+..... .|+++.|..+|++.... +. ...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~-~~~ 164 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PM-INI 164 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CC-TTH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hh-hhH
Confidence 543 34567666655 6665544 24333 34455555554433 56777777777777653 11 111
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH------hcC---CCCCh
Q 008727 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR------KLG---VAPRT 296 (556)
Q Consensus 226 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~---~~~~~ 296 (556)
...|..........|. .+...++. ...+++..|..++.+.. +.. +.|+.
T Consensus 165 ~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 1222221111000000 00001110 12234455555554421 111 12221
Q ss_pred --------hhHHHHHHHHHhc----CCH----HHHHHHHHHHHcCCCCCCHHHHHHHHHHHh--------cCChh-----
Q 008727 297 --------NDYREFILGLIVE----RRI----CEAKELGEVIVSGKFTIDDDVLNALIGSVS--------SIDPR----- 347 (556)
Q Consensus 297 --------~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~----- 347 (556)
..|...+...... ++. ..+..+|++.+...+ .++..|......+. .|+.+
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 2233332221111 222 356677777776533 35666666655544 47776
Q ss_pred --HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccH-hhHHHHHHHHHhcCCHHHHHHHHH
Q 008727 348 --SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM-ESYNVMVSFLCTSGRLREAYGVIQ 424 (556)
Q Consensus 348 --~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~ 424 (556)
+|..+|++..+.-.+.+...+..++..+.+.|++++|..+|+.+.+..+. +. ..|...+..+.+.|+.++|.++|+
T Consensus 302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88999988876323345788888899999999999999999999986433 33 589999998999999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHH-HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-C
Q 008727 425 EMKRKGLDPDVSFYNSLMEA-CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV-A 502 (556)
Q Consensus 425 ~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~ 502 (556)
+..+.... +...|...... +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++....+. .
T Consensus 381 ~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 381 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 99876322 23333322222 336899999999999998763 44688899999999999999999999999998742 3
Q ss_pred CC--HhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 503 PD--ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 503 p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
|+ ...|...+......|+.+.+..+.+++.+.-+
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 32 34787778888889999999999999877554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-16 Score=153.26 Aligned_cols=358 Identities=9% Similarity=0.030 Sum_probs=221.7
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCCh
Q 008727 83 SPLSYHSILKSLSL----SRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ----GKNTQKAFSVFNEVKFNCEDIGP 154 (556)
Q Consensus 83 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 154 (556)
++..+..+...+.. .+++++|...|+...+.| +...+..|...|.. .++.++|.+.|++..+.| ++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55666666666665 667777777777666654 45566666666666 667777777777766654 55
Q ss_pred HhHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHh----hCcHHHHHHHHHHHHhccCCCCCch
Q 008727 155 EICNSLLAVLAS----DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE----NAKLGQVLSMLDEVRKRENSMINGS 226 (556)
Q Consensus 155 ~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 226 (556)
..+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.+.|+...+. + +.
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~----~~ 183 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G----NV 183 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----CH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C----CH
Confidence 566666666666 566667777666666554 33444444444544 45566666666555543 1 23
Q ss_pred hhHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhh
Q 008727 227 VIAVLIIHGFCK----GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL----MGSVFEREVVLKKKRKLGVAPRTND 298 (556)
Q Consensus 227 ~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 298 (556)
..+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .++.++|...|++..+.|. ...
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a 257 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN---SIA 257 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC---HHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHH
Confidence 444445555544 555556665555555443 33444444444443 4455555555554444321 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008727 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378 (556)
Q Consensus 299 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 378 (556)
+..+...+..- .-..++.++|+..|++..+.| +...+..+...|...
T Consensus 258 ~~~lg~~y~~g------------------------------~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~ 304 (490)
T 2xm6_A 258 QFRLGYILEQG------------------------------LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKG 304 (490)
T ss_dssp HHHHHHHHHHT------------------------------TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCC------------------------------CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcC
Confidence 22222222220 000345666666666665543 344555566666665
Q ss_pred -----CChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh---
Q 008727 379 -----NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG---RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR--- 447 (556)
Q Consensus 379 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--- 447 (556)
+++++|...|+...+.+ +...+..+...|...| +.++|.+.|++..+.| +...+..+...|..
T Consensus 305 ~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 378 (490)
T 2xm6_A 305 AEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKG 378 (490)
T ss_dssp BTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 78888888888887764 4556777777777655 7888888888888763 56778888888877
Q ss_pred -cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCC
Q 008727 448 -EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE----VGEIEGALRLFHNMLEKGVA 502 (556)
Q Consensus 448 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 502 (556)
.+++++|.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.|..
T Consensus 379 ~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 379 VKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 788899999999888854 56677788888887 78999999999998887643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-15 Score=150.28 Aligned_cols=369 Identities=11% Similarity=0.020 Sum_probs=248.7
Q ss_pred HHHHHHhHhCCCCCCHHhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh----cCCHhHHHH
Q 008727 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQ----GKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS----DGYIDNALK 175 (556)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~ 175 (556)
...++...+.| +...+..+...|.. .+++++|...|++..+.| ++..+..|...|.. .+++++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44444444443 56666666666666 677777777777776653 55666667777766 677777777
Q ss_pred HHHHHHhCCCccChhhHHHHHHHHHh----hCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhc----cCCHHHHHH
Q 008727 176 MFDEMSHRGVEFSTIGFGVFIWKFCE----NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK----GKRVEEAFK 247 (556)
Q Consensus 176 ~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~ 247 (556)
.|++..+.| +...+..+...|.. .+++++|.+.|+..... + +...+..|...|.. .++.++|.+
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-G----RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 777766654 33444445555555 55666666666666544 1 23444445555544 556666666
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 248 VLDELRIRECKPDFIAYRIVAEEFKL----MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323 (556)
Q Consensus 248 ~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (556)
.|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +...+..+...+....
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~------------- 233 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGI------------- 233 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS-------------
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC-------------
Confidence 666655543 44455555555544 455555555555544432 1222222222222200
Q ss_pred cCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCcc
Q 008727 324 SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK----RNKSDELVEVYKVLSANDYFTD 399 (556)
Q Consensus 324 ~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 399 (556)
-..++.++|...|++..+.| +...+..+...|.. .++.++|.+.|+...+.+ +
T Consensus 234 -----------------g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~ 290 (490)
T 2xm6_A 234 -----------------GVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---N 290 (490)
T ss_dssp -----------------SSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---C
T ss_pred -----------------CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---C
Confidence 00345666666666665543 34455556666666 899999999999998765 5
Q ss_pred HhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcC---ChhhHHHHHHHHHHcCCCCCHH
Q 008727 400 MESYNVMVSFLCTS-----GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED---LLRPAKKLWDQMFASGCSGNLK 471 (556)
Q Consensus 400 ~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~ 471 (556)
...+..+...|... ++.++|...+++..+.| +...+..+...|...| +.++|.+.|++..+.| +..
T Consensus 291 ~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~ 364 (490)
T 2xm6_A 291 SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKA 364 (490)
T ss_dssp HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHH
Confidence 66778888888887 89999999999999875 5567778888887756 7899999999999864 677
Q ss_pred HHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHhhhCCCc
Q 008727 472 TYNILISKFSE----VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ----ETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 472 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 537 (556)
.+..|...|.. .+++++|.+.|++..+.| +...+..+...|.+ .+++++|..+|++..+.++.
T Consensus 365 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 365 AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 88889999998 899999999999999876 56778888888887 89999999999999988754
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-17 Score=152.70 Aligned_cols=289 Identities=14% Similarity=0.037 Sum_probs=155.9
Q ss_pred ChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHH
Q 008727 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232 (556)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 232 (556)
+...+..+...+...|++++|.++|+++.+... .+...+..++..+...|++++|...++.+... .|.+...+..+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l 96 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDL---YPSNPVSWFAV 96 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTSTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHH
Confidence 444555555555555666666666655554431 23334444444555555555555555555544 33344445555
Q ss_pred HHHHhccC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 008727 233 IHGFCKGK-RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311 (556)
Q Consensus 233 i~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 311 (556)
...+...| ++++|.+.|++..+... .+...|..+...+...|++++|.+.+++..+....
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------------ 157 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG------------------ 157 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT------------------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc------------------
Confidence 55555555 55555555555544321 12334444444444444444444444444332111
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008727 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391 (556)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 391 (556)
+...+..+...+...|++++|...++.+
T Consensus 158 ----------------------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 185 (330)
T 3hym_B 158 ----------------------------------------------------CHLPMLYIGLEYGLTNNSKLAERFFSQA 185 (330)
T ss_dssp ----------------------------------------------------CSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------------------------------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1222333445555666666666666666
Q ss_pred HhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 008727 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG--------LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463 (556)
Q Consensus 392 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 463 (556)
.+..+. +...+..+...+...|++++|...+++..+.. ...+..++..+..++...|++++|.+.++++.+
T Consensus 186 l~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 264 (330)
T 3hym_B 186 LSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV 264 (330)
T ss_dssp HTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 554433 45566666666666777777777666665531 022345666666677777777777777777666
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHH-HccCC
Q 008727 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGL-CQETN 520 (556)
Q Consensus 464 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~-~~~g~ 520 (556)
.. +.+...|..+..+|...|++++|.+.|+++.+. .| +...+..+..++ ...|+
T Consensus 265 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 265 LI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC
T ss_pred hC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCc
Confidence 53 345566666777777777777777777776643 23 444555555555 34444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-16 Score=150.66 Aligned_cols=201 Identities=6% Similarity=-0.092 Sum_probs=158.8
Q ss_pred CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHH
Q 008727 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194 (556)
Q Consensus 115 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 194 (556)
.+.+...+..+...+...|++++|.++|+++.+..+. +...+..++..+...|++++|..+++++.+... .+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHH
Confidence 4567778889999999999999999999999877543 677888889999999999999999999988642 35678888
Q ss_pred HHHHHHhhC-cHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008727 195 FIWKFCENA-KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273 (556)
Q Consensus 195 li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 273 (556)
+...+...| ++++|.+.|+.+... .|.+...+..+...+...|++++|.+.|++..+.... +...+..+...+..
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTL---EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTT---CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 888999999 999999999999876 5667788999999999999999999999999876322 45667778888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322 (556)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 322 (556)
.|++++|.+.+++..+.... +...+..+...+...|++++|...++.+
T Consensus 172 ~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99999999988888765321 2344445555555555555555554443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-15 Score=148.25 Aligned_cols=416 Identities=9% Similarity=0.011 Sum_probs=281.0
Q ss_pred CHHHHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 008727 48 SPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127 (556)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 127 (556)
+.......+.....++...|...|+.+.... +.+...|...+..+.+.|++++|..+|+++.... |+...|...+.
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 4455555555444567889999999986653 4578889999999999999999999999999875 58888877775
Q ss_pred HH-HcCCChHHHHH----HHHHHHh-CCCCC-ChHhHHHHHHHHHh---------cCCHhHHHHHHHHHHhCCCccCh--
Q 008727 128 SL-IQGKNTQKAFS----VFNEVKF-NCEDI-GPEICNSLLAVLAS---------DGYIDNALKMFDEMSHRGVEFST-- 189 (556)
Q Consensus 128 ~~-~~~~~~~~a~~----~~~~~~~-~~~~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~~~~-- 189 (556)
.. ...|+.+.|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|++..+. |..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~ 164 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINI 164 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhH
Confidence 33 45677777765 7777654 34433 56788888887765 78999999999999883 332
Q ss_pred -hhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH------hhCC---CCC
Q 008727 190 -IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL------RIRE---CKP 259 (556)
Q Consensus 190 -~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m------~~~~---~~p 259 (556)
..|..........|. . +...++. .+.++++.|..++.++ .+.. +.|
T Consensus 165 ~~~~~~~~~~e~~~~~-~---------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI-H---------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp HHHHHHHHHHHHHHCH-H---------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHHHHHHHHHHhhch-h---------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 233222211100110 0 0011110 1233455555555542 1111 233
Q ss_pred C--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-------cCCHH---
Q 008727 260 D--------FIAYRIVAEEFKLM----GSV----FEREVVLKKKRKLGVAPRTNDYREFILGLIV-------ERRIC--- 313 (556)
Q Consensus 260 ~--------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~--- 313 (556)
+ ...|...+...... ++. ..+..+|++..... .-+...|..+...+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 3 23444444332221 222 36667777777652 1234556666665554 68876
Q ss_pred ----HHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHH
Q 008727 314 ----EAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPT--LSTLSNLSKNLCKRNKSDELVE 386 (556)
Q Consensus 314 ----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~ 386 (556)
+|..+++..++.-.+.+...|..+...+. .|++++|..+|++..+.. |+ ...|..++..+.+.|+++.|.+
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 88889988886433445666766666644 689999999999998853 43 3578888888889999999999
Q ss_pred HHHHHHhCCCCccHhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 008727 387 VYKVLSANDYFTDMESYNVMVSF-LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465 (556)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 465 (556)
+|+...+.... +...|...... +...|+.++|..+|+...+.... +...|..++..+.+.|+.++|..+|++....+
T Consensus 378 ~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 378 IFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 99999876432 33333332222 34689999999999998876432 57889999999999999999999999999863
Q ss_pred -CCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 466 -CSGN--LKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 466 -~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
..|+ ...|...+......|+.+.+..+++++.+.
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2332 447888888888999999999999999865
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-17 Score=159.13 Aligned_cols=304 Identities=10% Similarity=-0.034 Sum_probs=170.9
Q ss_pred cCCHhHHHH-HHHHHHhCCC---ccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCH
Q 008727 167 DGYIDNALK-MFDEMSHRGV---EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242 (556)
Q Consensus 167 ~g~~~~a~~-~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 242 (556)
.|++++|.+ .|++...... ..+...+..+...+...|++++|...|+.+... .|.+..++..+...+.+.|++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ---DPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCcCH
Confidence 456666666 6654443221 112345556666677777777777777777665 455566666777777777777
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322 (556)
Q Consensus 243 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 322 (556)
++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+........ +..+ +.....
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~------- 178 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL-VTPA-------EEGAGG------- 178 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGG-CC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH-HHHH-------HHHhhh-------
Confidence 77777777776553 2256667777777777777777777777776643221111 0000 000000
Q ss_pred HcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc-cHh
Q 008727 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT-DME 401 (556)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~ 401 (556)
. .+. ..+. .+..+...|++++|...++.+.+..+.. +..
T Consensus 179 ----~----------------------------------~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 218 (368)
T 1fch_A 179 ----A----------------------------------GLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD 218 (368)
T ss_dssp ----------------------------------------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred ----h----------------------------------ccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHH
Confidence 0 000 0000 1111225566666666666655543221 355
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
++..+...|...|++++|...++++.+.... +..+|..+...+...|++++|.+.++++.+.. +.+...+..+..+|.
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 6666666666677777777777766665322 45666667777777777777777777766653 344566677777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCC----------CHhhHHHHHHHHHccCCHHHHHHHHHHh
Q 008727 482 EVGEIEGALRLFHNMLEKGVAP----------DATTYTSLLEGLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~g~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 531 (556)
+.|++++|.+.|+++.+..... ...+|..+..+|...|++++|..++++.
T Consensus 297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 7777777777777766531110 1456777777777777777777766643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=182.97 Aligned_cols=115 Identities=18% Similarity=0.185 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLSA---NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 442 (556)
.||+++|++||+.|++++|.++|+.|.+ .|+.||+++||+||.+||+.|++++|.++|++|.+.|+.||..|||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4455555555555555555555544432 2444555555555555555555555555555555555555555555555
Q ss_pred HHHhhcCCh-hhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008727 443 EACCREDLL-RPAKKLWDQMFASGCSGNLKTYNILISKF 480 (556)
Q Consensus 443 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 480 (556)
.++++.|+. ++|.++|++|.+.|+.||..+|++++.++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 555555442 34455555555555555555555554433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.7e-19 Score=177.21 Aligned_cols=135 Identities=13% Similarity=0.125 Sum_probs=103.3
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKR---KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 475 (556)
-..+||++|.+|++.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 455788888888888888888888877653 47788888888888888888888888888888888888888888888
Q ss_pred HHHHHHccCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcc
Q 008727 476 LISKFSEVGE-IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538 (556)
Q Consensus 476 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 538 (556)
||.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. .+++.++++ ..++.|
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p 264 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSL 264 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCC
Confidence 8888888877 467788888888888888888888877766664 444444444 334333
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=5.2e-14 Score=147.06 Aligned_cols=384 Identities=9% Similarity=0.082 Sum_probs=176.4
Q ss_pred CCCCHHHHHHHhhhhhc-cChhHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhH
Q 008727 45 DSLSPSLVARVINPYLL-THHSLALGFFNWASQQPN-FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122 (556)
Q Consensus 45 ~~~~~~~~~~~l~~~~~-~~~~~a~~~f~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (556)
.+..|+.+.-..+.+.. +.+..|+.+++.+..++. |.-+...-+.++....+. +..+..++.+..... + .
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~ 1052 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---A 1052 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---H
Confidence 34455555544444443 235555555555543322 223334444444443333 333333333333211 1 1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhh
Q 008727 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202 (556)
Q Consensus 123 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 202 (556)
.-+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhC
Confidence 2244445555555555555555410 1112222221 3445555555554331 234455555555555
Q ss_pred CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008727 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282 (556)
Q Consensus 203 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 282 (556)
|++++|+..|... .+...|..++..+.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...
T Consensus 1119 G~~kEAIdsYiKA--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred CCHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH
Confidence 5555555555322 223444445555555555555555555444332 222222235555555555543222
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCC
Q 008727 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGR 361 (556)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~ 361 (556)
+. . .++...+..+...|...|++++|..+|..+ ..|..+...+. .|+++.|.+.+++.
T Consensus 1189 fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1189 FI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred HH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 21 1 223334444445555555555555555543 23333333332 24555555555443
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 008727 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441 (556)
Q Consensus 362 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 441 (556)
.+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+++++...... +-....|+-+
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 233445555555555555555554433221 244455566666777777777777776655432 1233345444
Q ss_pred HHHHhhc--CChhhHHHHHHHHHHcCCCC------CHHHHHHHHHHHHccCCHHHHH
Q 008727 442 MEACCRE--DLLRPAKKLWDQMFASGCSG------NLKTYNILISKFSEVGEIEGAL 490 (556)
Q Consensus 442 l~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~ 490 (556)
...|++- ++..++.++|..-. +++| +...|.-++..|.+.|+++.|.
T Consensus 1321 aiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4444442 23333333333221 1222 4566777777777777777776
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-17 Score=156.23 Aligned_cols=188 Identities=13% Similarity=0.045 Sum_probs=144.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHH---------------HHHHHHhcCCHHHHHHHHHHHHH
Q 008727 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV---------------MVSFLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 364 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~ 428 (556)
+..++..+...+...|++++|.+.++.+.+..+. +...+.. .+..+...|++++|...++++.+
T Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 209 (368)
T 1fch_A 131 NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 209 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 4555666666666777777777777766665433 2222211 23334488999999999999998
Q ss_pred CCCCC-CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhh
Q 008727 429 KGLDP-DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507 (556)
Q Consensus 429 ~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 507 (556)
..... +..++..+...|...|++++|...++++.+.. +.+..+|..+...|...|++++|.+.|+++.+.. +.+...
T Consensus 210 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 287 (368)
T 1fch_A 210 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRS 287 (368)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 74332 47889999999999999999999999999864 5568899999999999999999999999998763 235778
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhCCCcc----------cHHHHHHHHHHHhhhh
Q 008727 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVML----------ARSILSTFMISLCRRV 554 (556)
Q Consensus 508 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~----------~~~~~~~l~~~~~~~~ 554 (556)
+..+...|.+.|++++|...++++.+..+.. ....+..+..+|.+.|
T Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 288 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 9999999999999999999999998755433 2567777888877665
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.3e-17 Score=154.71 Aligned_cols=276 Identities=12% Similarity=0.026 Sum_probs=159.0
Q ss_pred ChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008727 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267 (556)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 267 (556)
+...+..+...+.+.|++++|++.|+.+... .|.+..++..+...+.+.|++++|.+.|++..+.. +.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ---DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 3445666677777777777777777777765 45566777777888888888888888888777653 2246677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCCh
Q 008727 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTN-DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP 346 (556)
Q Consensus 268 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (556)
...+...|++++|.+.++++.+.. |+.. .+..+.
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~------------------------------------------- 174 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK------------------------------------------- 174 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC------------------------------------------------
T ss_pred HHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------------------------
Confidence 777888888888888887776642 1111 010000
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-ccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008727 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF-TDMESYNVMVSFLCTSGRLREAYGVIQE 425 (556)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~ 425 (556)
.....+..+...+...|++++|...++++.+..+. ++..++..+...|...|++++|++.+++
T Consensus 175 ----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 238 (365)
T 4eqf_A 175 ----------------GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNA 238 (365)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ----------------cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 00111222333444555555555555555443321 1345555666666666666666666666
Q ss_pred HHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC----
Q 008727 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV---- 501 (556)
Q Consensus 426 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---- 501 (556)
+.+.... +..+|..+..+|...|++++|.+.|+++.+.. +.+..+|..+..+|...|++++|.+.|+++.+...
T Consensus 239 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 316 (365)
T 4eqf_A 239 ALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN 316 (365)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCC
Confidence 5554322 45566666666666666666666666666542 33355566666666666666666666666654310
Q ss_pred -------CCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 008727 502 -------APDATTYTSLLEGLCQETNLQAAFEVFNK 530 (556)
Q Consensus 502 -------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 530 (556)
..+...|..+..++...|+.+.+..+.++
T Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 317 QQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp ----------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 00245566666677777777666665554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-16 Score=149.02 Aligned_cols=280 Identities=9% Similarity=-0.003 Sum_probs=128.0
Q ss_pred cChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHH
Q 008727 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141 (556)
Q Consensus 62 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 141 (556)
++.+.|.++++.. +++.+|..+..++.+.|++++|++.|.+ .+|...|..++..+...|++++|+..
T Consensus 17 ~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 17 GNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3467789888866 3446999999999999999999999965 25777999999999999999999998
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCC
Q 008727 142 FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221 (556)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 221 (556)
++...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 8777664 4467889999999999999999998885 367789999999999999999999999966
Q ss_pred CCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 008727 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301 (556)
Q Consensus 222 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (556)
..|..++.++.+.|++++|.+.+.++. +..+|..++.+|...|+++.|...... +...+.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH
Confidence 367889999999999999999999982 789999999999999999999554443 2233344557
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC------CHHHHHHHHHH
Q 008727 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK-GRVP------TLSTLSNLSKN 374 (556)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~ll~~ 374 (556)
++..|.+.|.++++..+++...... +-....|+-+--.+++-.+++.++.++...+. +++| +...|..+.-.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999988765 44566677776667766666665555543222 1111 23445556666
Q ss_pred HHhcCChHHHHH
Q 008727 375 LCKRNKSDELVE 386 (556)
Q Consensus 375 ~~~~g~~~~a~~ 386 (556)
|...++++.|..
T Consensus 292 y~~~~e~d~A~~ 303 (449)
T 1b89_A 292 YDKYEEYDNAII 303 (449)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHhhchHHHHHH
Confidence 667777776655
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-14 Score=146.54 Aligned_cols=384 Identities=13% Similarity=0.139 Sum_probs=283.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCC--CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK--ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (556)
.++.--...+++|...|.+.+|.++++.+.-.+ ..-+....+.|+.+..+. +..+..+..+..... ....
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHH
Confidence 344445566777888888888888888877432 113345556666666666 556666666555321 1344
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhcc
Q 008727 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239 (556)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 239 (556)
+...+...|.+++|..+|++... .....+.++ -..+++++|.++.+++ ....+|..+..++...
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv--------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC--------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc--------CCHHHHHHHHHHHHhC
Confidence 67778889999999999998631 112223332 2678899999998855 3368888999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008727 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319 (556)
Q Consensus 240 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 319 (556)
|++++|.+.|.+. -|...|..++.++.+.|++++|.+.|....+.. ++......+..+|.+.++++....+.
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 9999999999764 378889999999999999999999999877754 33334445888999999988644432
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcc
Q 008727 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399 (556)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 399 (556)
+ +. .....++..-..+..|++++|..+|... ..|..+..++.+.|+++.|.+.+++.. +
T Consensus 1191 ----~-~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n 1249 (1630)
T 1xi4_A 1191 ----N-GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------S 1249 (1630)
T ss_pred ----h-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------C
Confidence 2 11 1233444444456689999999999885 478999999999999999999999772 6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008727 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (556)
Q Consensus 400 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (556)
..+|..+-.+|...|+++.|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|+-|...
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiL 1323 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHH
Confidence 689999999999999999998877643 2366778899999999999999999998888654 4456677777777
Q ss_pred HHcc--CCHHHHHHHHHHHHHCCCCC------CHhhHHHHHHHHHccCCHHHHHH
Q 008727 480 FSEV--GEIEGALRLFHNMLEKGVAP------DATTYTSLLEGLCQETNLQAAFE 526 (556)
Q Consensus 480 ~~~~--g~~~~A~~~~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~~a~~ 526 (556)
|++. ++..++.+.|..-. .+.| +...|..++..|.+.|+++.|..
T Consensus 1324 yaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 7764 45555555555433 2222 46679999999999999999984
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=152.18 Aligned_cols=267 Identities=9% Similarity=-0.034 Sum_probs=150.9
Q ss_pred ChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHH
Q 008727 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232 (556)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 232 (556)
+...|..+...+.+.|++++|.+.|+++.+... .+..++..+...+...|++++|++.|+++... .|.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLEL---QPNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHHHHH
Confidence 334466666666666666666666666665432 24556666666666666677777666666655 44556666667
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 008727 233 IHGFCKGKRVEEAFKVLDELRIRECKPDF-----------IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301 (556)
Q Consensus 233 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (556)
...|...|++++|.+.|+++.+. .|+. ..+..+...+...|++++|.+.++++.+....
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------- 209 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD-------- 209 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCS--------
T ss_pred HHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC--------
Confidence 77777777777777777776653 1221 12222344445555555555555554443211
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 008727 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381 (556)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 381 (556)
.++..++..+...+...|++
T Consensus 210 ------------------------------------------------------------~~~~~~~~~l~~~~~~~g~~ 229 (365)
T 4eqf_A 210 ------------------------------------------------------------MIDPDLQTGLGVLFHLSGEF 229 (365)
T ss_dssp ------------------------------------------------------------SCCHHHHHHHHHHHHHHTCH
T ss_pred ------------------------------------------------------------ccCHHHHHHHHHHHHHCCCH
Confidence 01233334444445555555
Q ss_pred HHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHH
Q 008727 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461 (556)
Q Consensus 382 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 461 (556)
++|...++++.+..+. +..+|..+...|...|++++|+..++++.+.... +..++..+..+|...|++++|...|+++
T Consensus 230 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 230 NRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAVSNFLTA 307 (365)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555555555544332 4556666666666666666666666666665322 3566666666677777777777777666
Q ss_pred HHcCC-----------CCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 008727 462 FASGC-----------SGNLKTYNILISKFSEVGEIEGALRLFHN 495 (556)
Q Consensus 462 ~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (556)
.+..- ..+...|..+..++...|+.+.+.++.++
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 308 LSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 65310 01256677777777777777777666554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=149.47 Aligned_cols=237 Identities=10% Similarity=0.111 Sum_probs=75.8
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHH
Q 008727 96 LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALK 175 (556)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 175 (556)
+.|++++|.++++++ +++.+|..|+.++.+.|++++|++.|.+. +|...|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 456778888877766 33458888888888888888888888653 366688888888888888888888
Q ss_pred HHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 008727 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255 (556)
Q Consensus 176 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 255 (556)
.++...+. .++..+.+.++.+|.+.|+++++.++++. ++..+|+.+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTTC---------C----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 66655553 34566777788888888888887776631 23357777888888888888888888765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHH
Q 008727 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335 (556)
Q Consensus 256 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (556)
..|..+..++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+....
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHH
Confidence 36777888888888888888888776 2566788888888888888887543322 112222222
Q ss_pred HHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 336 ALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376 (556)
Q Consensus 336 ~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 376 (556)
.++..|. .|.+++|+.+++...... .-....|+-+.-+|+
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 3333333 245555555555444333 233444444433333
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.8e-16 Score=144.56 Aligned_cols=278 Identities=10% Similarity=-0.013 Sum_probs=180.7
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008727 191 GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270 (556)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 270 (556)
.+..+...+...|++++|..+|+.+... .|.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQA---APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3444445555556666666666655544 34445555556666666666666666666665542 2244555556666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHH
Q 008727 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350 (556)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~ 350 (556)
+...|++++|.+.++++.+..... ...+..+...
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~--------------------------------------------- 132 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQY-EQLGSVNLQA--------------------------------------------- 132 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTT-TTC----------------------------------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCcc-HHHHHHHhHH---------------------------------------------
Confidence 666666666666666655432111 0011000000
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008727 351 VFFNFMIEKGRVPTLSTLSNLSK--NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 428 (556)
.|+......+.. .+...|++++|.+.++.+.+..+. +...+..+...|...|++++|.+.++++.+
T Consensus 133 -----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 200 (327)
T 3cv0_A 133 -----------DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVE 200 (327)
T ss_dssp ------------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 000111111111 255667788888888887765543 677888888888888999999999988887
Q ss_pred CCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-----
Q 008727 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP----- 503 (556)
Q Consensus 429 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----- 503 (556)
.... +..++..+...+...|++++|.+.++++.+.. +.+..+|..+..+|...|++++|.+.++++.+.....
T Consensus 201 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 278 (327)
T 3cv0_A 201 LRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278 (327)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---
T ss_pred hCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc
Confidence 6432 57788888889999999999999999988764 4567788889999999999999999999988653221
Q ss_pred ------CHhhHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 504 ------DATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 504 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
+...|..+..++.+.|++++|..++++.+
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 36778888899999999999999887654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-15 Score=136.52 Aligned_cols=150 Identities=10% Similarity=0.058 Sum_probs=73.4
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHH
Q 008727 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209 (556)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 209 (556)
...|+++.|+..++.+....+.........+.++|...|+++.|+..++. .-.|+..++..+...+...|+.++|+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 33455555555444433221111112333444555555555555443322 12233444444444455555555555
Q ss_pred HHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
+.++.+... +..|.+...+..+...+...|++++|++.+++ ..+...+..+...+.+.|++++|.+.++++.+
T Consensus 86 ~~l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 86 AELDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555554433 22344444455555566666666666666654 23455555666666666666666666666555
Q ss_pred c
Q 008727 290 L 290 (556)
Q Consensus 290 ~ 290 (556)
.
T Consensus 159 ~ 159 (291)
T 3mkr_A 159 Q 159 (291)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-14 Score=139.86 Aligned_cols=386 Identities=10% Similarity=-0.054 Sum_probs=192.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhC-----C---CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhC-----
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVN-----K---ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN----- 148 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----- 148 (556)
.....||.+..++...|++++|++.|++..+. + -+....+|+.+...|...|++++|...+++....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34566778878888888888888888776542 1 1223556777777778888888888777776431
Q ss_pred C--CCCChHhHHHHHHHHHhc--CCHhHHHHHHHHHHhCCCccC-hhhHHHHHHH---HHhhCcHHHHHHHHHHHHhccC
Q 008727 149 C--EDIGPEICNSLLAVLASD--GYIDNALKMFDEMSHRGVEFS-TIGFGVFIWK---FCENAKLGQVLSMLDEVRKREN 220 (556)
Q Consensus 149 ~--~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~---~~~~g~~~~a~~~~~~~~~~~~ 220 (556)
+ ......+++.+..++... +++++|++.|++..+.+ |+ ...+..+... +...++.++|++.++...+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l-- 204 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL-- 204 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--
Confidence 0 011344555555555443 35777777777776643 32 2233333323 22345556677777666655
Q ss_pred CCCCchhhHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 008727 221 SMINGSVIAVLIIHGFCK----GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296 (556)
Q Consensus 221 ~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (556)
.|.+..++..+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.... +.
T Consensus 205 -~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 281 (472)
T 4g1t_A 205 -NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NA 281 (472)
T ss_dssp -CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CH
T ss_pred -CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hH
Confidence 44444555444433332 345666777776665542 224555666666666777777777776666554221 12
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376 (556)
Q Consensus 297 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 376 (556)
..+..+...|...+.... ... .........
T Consensus 282 ~~~~~lg~~y~~~~~~~~-------------------------------------------~~~-------~~~~~~~~~ 311 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVM-------------------------------------------NLR-------ENGMYGKRK 311 (472)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------------------------------------HC-------------CHHH
T ss_pred HHHHHHHHHHHHHHHHhh-------------------------------------------hHH-------HHHHHHHHH
Confidence 222222222211100000 000 000000011
Q ss_pred hcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHH-HHhhcCChhh
Q 008727 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS--FYNSLME-ACCREDLLRP 453 (556)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~~~~~~ 453 (556)
..+..+.|...++...+..+. +...+..+...|...|++++|+..|++..+....|... .+..+.. .....|+.++
T Consensus 312 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (472)
T 4g1t_A 312 LLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDK 390 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 112345566666665554332 44466666777777777777777777766654332211 1222221 2235567777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
|+..|++..+. .|+....... ...+.+++++..+.. +.+..+|..+...|...|++++|++.|++.++
T Consensus 391 Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 391 AIHHFIEGVKI--NQKSREKEKM---------KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHHHHHHHS--CCCCHHHHHH---------HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHhc--CcccHHHHHH---------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777663 4443322211 233344455544432 23566777777777777777777777777776
Q ss_pred CCCc
Q 008727 534 HDVM 537 (556)
Q Consensus 534 ~~~~ 537 (556)
.+..
T Consensus 459 ~~~~ 462 (472)
T 4g1t_A 459 SGSL 462 (472)
T ss_dssp ----
T ss_pred cCCC
Confidence 6543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-14 Score=136.56 Aligned_cols=98 Identities=8% Similarity=-0.022 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 164 (556)
..+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...|+++.+..+. +..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHH
Confidence 445667778888889999999998888765 457778888888888889999999988888776433 677888888888
Q ss_pred HhcCCHhHHHHHHHHHHhCC
Q 008727 165 ASDGYIDNALKMFDEMSHRG 184 (556)
Q Consensus 165 ~~~g~~~~a~~~~~~m~~~~ 184 (556)
...|++++|.+.|+++.+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~ 119 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ 119 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888887754
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-14 Score=133.69 Aligned_cols=251 Identities=14% Similarity=0.113 Sum_probs=124.9
Q ss_pred HHHhhCcHHHHHHHHHHHHhccCCCCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 008727 198 KFCENAKLGQVLSMLDEVRKRENSMING-SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276 (556)
Q Consensus 198 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 276 (556)
.....|++..|+..++..... .|.+ ......+.++|...|+++.|+..++.. -.|+..++..+...+...++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 344456666666555544322 2222 123334455566666666655544321 23444455555555555555
Q ss_pred HHHHHHHHHHHHhcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHH
Q 008727 277 VFEREVVLKKKRKLGVAPRTND-YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355 (556)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~ 355 (556)
.++|++.++++...+..|+... +..+...+...|++++|.+.+ ++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l----------------------------------~~ 126 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTL----------------------------------HQ 126 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHH----------------------------------TT
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHH----------------------------------hC
Confidence 5555555555555444343222 222223444444444444333 22
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008727 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES---YNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432 (556)
Q Consensus 356 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 432 (556)
..+...+..+...+.+.|++++|.+.++.+.+.. |+... ....+..+...|++++|..+|+++.+...
T Consensus 127 ------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p- 197 (291)
T 3mkr_A 127 ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS- 197 (291)
T ss_dssp ------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-
T ss_pred ------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-
Confidence 2344455555555666666666666666655543 22211 11122222334566666666666665522
Q ss_pred CCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHC
Q 008727 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG-ALRLFHNMLEK 499 (556)
Q Consensus 433 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 499 (556)
.+...++.+..++.+.|++++|.+.++++.+.. +-+..++..++..+...|+.++ +.++++++.+.
T Consensus 198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 355556666666666666666666666665543 3345556666666666666544 44566665543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-13 Score=136.43 Aligned_cols=379 Identities=10% Similarity=-0.025 Sum_probs=225.9
Q ss_pred ccChhHHHHHHHHhhhC-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhC-----C--CCCCHHhHHHHH
Q 008727 61 LTHHSLALGFFNWASQQ-------PNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN-----K--ITLDSSVYRFII 126 (556)
Q Consensus 61 ~~~~~~a~~~f~~~~~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li 126 (556)
.++.++|++.|..+... ..-+....+|+.+..++...|++++|...+++..+. + ......++..+.
T Consensus 64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g 143 (472)
T 4g1t_A 64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence 57789999999987431 112234678999999999999999999999987652 1 112356666666
Q ss_pred HHHHc--CCChHHHHHHHHHHHhCCCCCChHhHHHHHHHH---HhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHh
Q 008727 127 PSLIQ--GKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL---ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201 (556)
Q Consensus 127 ~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 201 (556)
.++.. .+++++|++.|++..+..+. ++..+..+..++ ...++.++|++.|++..+.+. .+..++..+...+..
T Consensus 144 ~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 144 WTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHK 221 (472)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHH
Confidence 55554 45799999999999887544 666776666654 445788899999999887642 244555555555544
Q ss_pred ----hCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008727 202 ----NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277 (556)
Q Consensus 202 ----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 277 (556)
.|++++|.+.+++.... .|....++..+...|...|++++|.+.|++..+... -+..++..+..+|...+..
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~~~ 297 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEK---APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKVFQ 297 (472)
T ss_dssp CC------CHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHH
Confidence 36788999999999877 677788889999999999999999999999887632 2455666665555322111
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008727 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI 357 (556)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~ 357 (556)
.. ... ....+....+.. ..+.|...++...
T Consensus 298 ~~---------~~~--------------~~~~~~~~~~~~---------------------------~~~~A~~~~~~a~ 327 (472)
T 4g1t_A 298 VM---------NLR--------------ENGMYGKRKLLE---------------------------LIGHAVAHLKKAD 327 (472)
T ss_dssp HH---------HC--------------------CHHHHHH---------------------------HHHHHHHHHHHHH
T ss_pred hh---------hHH--------------HHHHHHHHHHHh---------------------------hHHHHHHHHHHHh
Confidence 00 000 000011111111 0133444444444
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHh--hHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008727 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME--SYNVMVS-FLCTSGRLREAYGVIQEMKRKGLDPD 434 (556)
Q Consensus 358 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p~ 434 (556)
+... .+...+..+...+...|++++|...|++..+....+... .+..+.. .+...|+.++|+..+++..+. .|+
T Consensus 328 ~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~ 404 (472)
T 4g1t_A 328 EAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQK 404 (472)
T ss_dssp HHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCC
T ss_pred hcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Ccc
Confidence 4321 234455666777788888888888888877655443221 2222222 234567888888888887775 344
Q ss_pred HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHhhH
Q 008727 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-VAPDATTY 508 (556)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~ 508 (556)
...... ....+.++++...+.. +.+..+|..+..+|...|++++|++.|++.++.| ..|+..+|
T Consensus 405 ~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 405 SREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp CHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred cHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 322221 2233455555555543 5567788888888888888888888888888764 34444433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-13 Score=119.36 Aligned_cols=209 Identities=11% Similarity=-0.042 Sum_probs=101.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
+++..+..+...+.+.|++++|...|+...+.. |.+...+..+...+.+.|++++|+..|++..+..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 344555555555555566666666665555543 344555555555555555555555555555554322 444555555
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 241 (556)
.++.+.+.. . .. .....|++++|+..++...+. .|.+...+..+...+...|+
T Consensus 81 ~~~~~~~~~------------~---~~---------~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~ 133 (217)
T 2pl2_A 81 EAYVALYRQ------------A---ED---------RERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGE 133 (217)
T ss_dssp HHHHHHHHT------------C---SS---------HHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhh------------h---hh---------hcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCC
Confidence 555544000 0 00 000115566666666555554 44445555555666666666
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008727 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321 (556)
Q Consensus 242 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 321 (556)
+++|++.|++..+.. .+...+..+..++...|++++|+..|++..+.... +...+..+...+...|++++|...++.
T Consensus 134 ~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 134 RDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred hHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666666666655544 45555556666666666666666666665553211 233444455555555666555555544
Q ss_pred H
Q 008727 322 I 322 (556)
Q Consensus 322 ~ 322 (556)
.
T Consensus 211 ~ 211 (217)
T 2pl2_A 211 E 211 (217)
T ss_dssp -
T ss_pred H
Confidence 3
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-13 Score=121.07 Aligned_cols=226 Identities=11% Similarity=-0.021 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC--C----hHhH
Q 008727 84 PLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI--G----PEIC 157 (556)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 157 (556)
...|..+...+...|++++|...|+++.+.. .+...+..+...+...|++++|.+.+++..+..... + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567788888999999999999999998877 778899999999999999999999999987643221 1 5789
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHh
Q 008727 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237 (556)
Q Consensus 158 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (556)
..+...+...|++++|.+.|++..+.. |+. ..+...|++++|.+.++.+... .|.....+..+...+.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHH
Confidence 999999999999999999999988854 332 3566778999999999998876 5666778888999999
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 008727 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317 (556)
Q Consensus 238 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 317 (556)
..|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.+
T Consensus 151 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999988763 23677888899999999999999999999887642 245567777888888898888888
Q ss_pred HHHHHHcC
Q 008727 318 LGEVIVSG 325 (556)
Q Consensus 318 ~~~~~~~~ 325 (556)
.++.+.+.
T Consensus 229 ~~~~a~~~ 236 (258)
T 3uq3_A 229 TLDAARTK 236 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88776653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.4e-13 Score=119.83 Aligned_cols=157 Identities=10% Similarity=0.089 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
.+..+...+...|++++|...++.+.+.. |+. ..+...|++++|...++++...... +...+..+...+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHH
Confidence 33444444555555555555555544432 121 2233445555555555555554211 3345555555566
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 008727 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526 (556)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 526 (556)
..|++++|.+.++++.+.. +.+..+|..+..+|...|++++|.+.++++.+.. +.+...|..+...+.+.|++++|.+
T Consensus 151 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6666666666666665543 3345556666666666666666666666665542 1235555556666666666666666
Q ss_pred HHHHhhhCC
Q 008727 527 VFNKSVNHD 535 (556)
Q Consensus 527 ~~~~m~~~~ 535 (556)
.+++..+.+
T Consensus 229 ~~~~a~~~~ 237 (258)
T 3uq3_A 229 TLDAARTKD 237 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 666655544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-13 Score=119.75 Aligned_cols=194 Identities=12% Similarity=0.011 Sum_probs=152.5
Q ss_pred HHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHH
Q 008727 51 LVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130 (556)
Q Consensus 51 ~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 130 (556)
...........++.+.|+..|+.+.... +.++..|..+...+.+.|++++|...+++..+.. |.+...+..+...+.
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3444444555678999999999986554 3578889999999999999999999999999876 567889999999999
Q ss_pred cC-----------CChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 008727 131 QG-----------KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199 (556)
Q Consensus 131 ~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 199 (556)
.. |++++|+..|++..+..+. +..+|..+..++...|++++|++.|++..+.+ .+...+..+...+
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 99 9999999999999887544 77889999999999999999999999998876 5777888888889
Q ss_pred HhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 008727 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253 (556)
Q Consensus 200 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 253 (556)
...|++++|+..|+...+. .|.+..++..+...+...|++++|.+.|++..
T Consensus 162 ~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC---------------
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999877 67777888888888999999999988887654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-10 Score=117.73 Aligned_cols=449 Identities=9% Similarity=0.012 Sum_probs=276.8
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCC---hHHHHHHHHHH
Q 008727 69 GFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN---TQKAFSVFNEV 145 (556)
Q Consensus 69 ~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~ 145 (556)
.+-+.+...+ .|...|..++..+.+.+.++.+..+|+.+... .|.+...|..-+..-.+.++ .+.+..+|+..
T Consensus 54 ~lE~~l~~np---~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 54 KLNDMIEEQP---TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHCc---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 3444444443 48888999998888888899999999988886 36777888888888888888 88999999988
Q ss_pred HhCCC-CCChHhHHHHHHHHHhcCCH--------hHHHHHHHHHHh-CCC-ccC-hhhHHHHHHHHH---------hhCc
Q 008727 146 KFNCE-DIGPEICNSLLAVLASDGYI--------DNALKMFDEMSH-RGV-EFS-TIGFGVFIWKFC---------ENAK 204 (556)
Q Consensus 146 ~~~~~-~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~~~-~~~-~~~~~~li~~~~---------~~g~ 204 (556)
..... +|++..|..-+....+.++. +.+.++|+.... .|. .++ ...|...+.... ..++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 77641 36888888888777665543 334467776544 454 443 345665554432 2345
Q ss_pred HHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008727 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284 (556)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 284 (556)
++.+..+|+..... +.. ....+|..... +.+.-+...+.+++.+. ..+++.|...+
T Consensus 210 ~~~~R~iy~raL~i-P~~-~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~---------------------~~~y~~Ar~~~ 265 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQ-PMD-CLESMWQRYTQ-WEQDVNQLTARRHIGEL---------------------SAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHTTS-CCS-SHHHHHHHHHH-HHHHHCTTTHHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ccH-HHHHHHHHHHH-HHHhcCcchHHHHHHHh---------------------hHHHHHHHHHH
Confidence 56677777776642 110 11122221111 11000000111111110 11223333333
Q ss_pred HHHHhc--CCC---CC-----------------h---hhHHHHHHHHHhcC-------CHHHHHHHHHHHHcCCCCCCHH
Q 008727 285 KKKRKL--GVA---PR-----------------T---NDYREFILGLIVER-------RICEAKELGEVIVSGKFTIDDD 332 (556)
Q Consensus 285 ~~~~~~--~~~---~~-----------------~---~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~ 332 (556)
.++... ++. |. . ..|...+.---..+ ..+.+..+|++.+...+ ....
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~ 344 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPE 344 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHH
Confidence 332211 110 10 0 12222222211111 12334566777776533 3566
Q ss_pred HHHHHHHHH-hcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------Cc---
Q 008727 333 VLNALIGSV-SSIDPRSAI-VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY---------FT--- 398 (556)
Q Consensus 333 ~~~~l~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---------~~--- 398 (556)
.|-.....+ ..|+.++|. ++|+..... .+.+...+...+....+.|+++.|.++|+.+.+... .|
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 666665554 357888897 999998864 344566677788888899999999999999876310 12
Q ss_pred ---------cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh-cCChhhHHHHHHHHHHcCCCC
Q 008727 399 ---------DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR-EDLLRPAKKLWDQMFASGCSG 468 (556)
Q Consensus 399 ---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~ 468 (556)
...+|...+....+.|..+.|..+|.+..+.-..+....|......-.+ .++.+.|..+|+...+. ++-
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~ 502 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTT
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCC
Confidence 1236888888888889999999999999876111123334333222223 35589999999999987 455
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHH
Q 008727 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP--DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546 (556)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 546 (556)
+...|...+......|+.+.|..+|++.......+ ....|...+.-=.+.|+.+.+..+.+++.+.-+.. .-+..+
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~--~~~~~f 580 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV--NKLEEF 580 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC--CHHHHH
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--cHHHHH
Confidence 67777888888888999999999999998763321 34567777777788999999999999998877542 344444
Q ss_pred HHHH
Q 008727 547 MISL 550 (556)
Q Consensus 547 ~~~~ 550 (556)
++-|
T Consensus 581 ~~ry 584 (679)
T 4e6h_A 581 TNKY 584 (679)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 4443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-13 Score=132.88 Aligned_cols=377 Identities=9% Similarity=0.018 Sum_probs=172.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCCh---HHHHHHHHHHHhCCCCCChHhHHHHHHHHHh
Q 008727 90 ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT---QKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166 (556)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 166 (556)
+...+.+.|++++|.+.|+...+.| +...+..|...|...|+. ++|.+.|++..+. ++..+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555666777777777777776655 333444555555556666 6777777766543 45555566554444
Q ss_pred cC-----CHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHH---HHHHHHhccCCCCCchhhHHHHHHHHhc
Q 008727 167 DG-----YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS---MLDEVRKRENSMINGSVIAVLIIHGFCK 238 (556)
Q Consensus 167 ~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~---~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (556)
.+ ++++|.+.|++..+.|. ...+..|...|...+..+++.+ .+...... .+......|...|..
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-----g~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-----GYPEAGLAQVLLYRT 153 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-----TCTTHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-----CCHHHHHHHHHHHHc
Confidence 43 56667777777666552 2244445555555444333222 22222222 112333444455555
Q ss_pred cCCHHHHH----HHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 008727 239 GKRVEEAF----KVLDELRIRECKPDFIAYRIVAEEFKLMG---SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311 (556)
Q Consensus 239 ~~~~~~A~----~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 311 (556)
.+.++.+. .+++..... +...+..+...|...| +.++|++.|++..+.|... ...+..+...|...
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~-a~~~~~Lg~~y~~g-- 226 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT-AQRVDSVARVLGDA-- 226 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHTCG--
T ss_pred CCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCC--
Confidence 44333222 222222221 1124444444444455 4555555555544443221 11111222222221
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChHHHHHHH
Q 008727 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN-L--CKRNKSDELVEVY 388 (556)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~ 388 (556)
.....+.++|+..|++.. .| +...+..+... + ...+++++|.+.|
T Consensus 227 ----------------------------~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 227 ----------------------------TLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp ----------------------------GGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred ----------------------------CCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 000124555555555554 22 22333333333 2 3466677777777
Q ss_pred HHHHhCCCCccHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh----cCChhhHHHHHH
Q 008727 389 KVLSANDYFTDMESYNVMVSFLCTSG-----RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----EDLLRPAKKLWD 459 (556)
Q Consensus 389 ~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~ 459 (556)
++..+.| +...+..+...|. .| +.++|.+.|++.. .| +...+..+...|.. ..+.++|...|+
T Consensus 275 ~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 275 DNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 7666654 4555556665555 34 6777777777665 22 45555556655554 336777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 460 QMFASGCSGNLKTYNILISKFSE----VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 460 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
+..+.| +......|...|.. ..+.++|...|+...+.|.. +.......+......++.++|..+.++..
T Consensus 347 ~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 347 TAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 777655 23334455555553 34677777777777766532 22222222222223345556666665543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-13 Score=129.89 Aligned_cols=373 Identities=9% Similarity=-0.039 Sum_probs=215.3
Q ss_pred hhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC--
Q 008727 59 YLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQI---NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK-- 133 (556)
Q Consensus 59 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-- 133 (556)
+..++...|++.|..+... + ++..+..+...+...|+. ++|...|+...+. ++..+..|...+...+
T Consensus 14 ~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC--------------------------------CHHHHHHHHHTC--C
T ss_pred HhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCC
Confidence 3456789999999998654 3 444556666777778888 8999999988754 5667777777565555
Q ss_pred ---ChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhH---HHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHH
Q 008727 134 ---NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDN---ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207 (556)
Q Consensus 134 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 207 (556)
+.++|...|++..+.|. ...+..|...|...+..++ +.+.+......| +......+...|...+.+++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 78899999999998763 4488888888887766444 455555555444 34566667777888875555
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHhccC---CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc----CCHHHH
Q 008727 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK---RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM----GSVFER 280 (556)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----~~~~~a 280 (556)
+......+.+. - ...++..+..|...|.+.| +.++|++.|+...+.|. ++...+..+...|... ++.++|
T Consensus 160 ~~~~a~~~~~~-a-~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 160 HLDDVERICKA-A-LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GHHHHHHHHHH-H-TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred CHHHHHHHHHH-H-HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 44443333222 0 1122337777888899999 99999999999998873 4555556666666554 688888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008727 281 EVVLKKKRKLGVAPRTNDYREFILG-L--IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI 357 (556)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~ 357 (556)
.+.|++.. .| +...+..+... + ...++.++|.+.|+...+
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--------------------------------- 279 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--------------------------------- 279 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---------------------------------
Confidence 88888876 22 22333333333 2 234555555555555444
Q ss_pred HcCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 008727 358 EKGRVPTLSTLSNLSKNLCKRN-----KSDELVEVYKVLSANDYFTDMESYNVMVSFLCT----SGRLREAYGVIQEMKR 428 (556)
Q Consensus 358 ~~~~~~~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~ 428 (556)
.| +...+..+...|. .| ++++|.+.|++.. . -+...+..+...|.. ..+.++|..+|++..+
T Consensus 280 -~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 280 -AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp -TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred -CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 33 3334444444444 33 6777777777665 2 255566666666655 3377888888888777
Q ss_pred CCCCCCHhHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 429 KGLDPDVSFYNSLMEACCR----EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 429 ~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
.|. ......|...|.. ..+.++|...|+...+.| .++.......+......++..+|..+.++..+
T Consensus 351 ~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 351 NGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 653 3345555555543 457788888888887766 33333332333333334455666666666543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-12 Score=116.27 Aligned_cols=201 Identities=9% Similarity=-0.039 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 008727 84 PLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163 (556)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 163 (556)
...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+.... +..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4667788888899999999999999988865 557888889999999999999999999998876543 77889999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCH
Q 008727 164 LASDGYIDNALKMFDEMSHRGVEF-STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242 (556)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 242 (556)
+...|++++|.+.|+++.+.+..| +...+..+...+...|++++|.+.++.+... .|.+...+..+...+...|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCH
Confidence 999999999999999988733334 4566777888888899999999999988876 455677788888889999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 243 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
++|.+.|+...+.. ..+...+..+...+...|+.++|.+.++++.+.
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999998887653 245667777888888888888888888888775
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-12 Score=113.54 Aligned_cols=203 Identities=9% Similarity=-0.090 Sum_probs=145.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
++..|..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.++++...... +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 45667777778888888888888888877754 456777777888888888888888888887765433 6677788888
Q ss_pred HHHhc-CCHhHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccC
Q 008727 163 VLASD-GYIDNALKMFDEMSHRGVEF-STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240 (556)
Q Consensus 163 ~~~~~-g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 240 (556)
.+... |++++|.+.++++.+.+..| +...+..+...+...|++++|...++.+... .|.+...+..+...+.+.|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcC
Confidence 88888 88888888888877732222 2456666777777778888888888777765 4455666777777777777
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
++++|.+.|++..+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888777777766432135556666666667777777777777776543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.8e-13 Score=121.42 Aligned_cols=246 Identities=9% Similarity=-0.072 Sum_probs=188.9
Q ss_pred cChhHHHHHHHHhhhCCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHH
Q 008727 62 THHSLALGFFNWASQQPNFT--HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139 (556)
Q Consensus 62 ~~~~~a~~~f~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 139 (556)
++.+.|+..|+.+....... .+...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 45788999999887653222 246778888999999999999999999999875 557889999999999999999999
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhcc
Q 008727 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219 (556)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 219 (556)
+.|+++....+. +..++..+..++.+.|++++|.+.|+++.+.. |+.......+..+...|++++|...++.....
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 999999886543 68899999999999999999999999998853 45555555555667789999999999888766
Q ss_pred CCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 008727 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP---DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296 (556)
Q Consensus 220 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (556)
.+++...+. ++..+...++.++|.+.+.......... +...+..+...+...|++++|...|++..+.. |+.
T Consensus 174 --~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 174 --SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp --SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred --CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 344444444 6777888888999999999887652111 14677888888999999999999999988753 322
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHH
Q 008727 297 NDYREFILGLIVERRICEAKELG 319 (556)
Q Consensus 297 ~~~~~ll~~~~~~~~~~~a~~~~ 319 (556)
+.....++...|++++|.+.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 233344666667777766554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-12 Score=118.20 Aligned_cols=238 Identities=11% Similarity=0.016 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 008727 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342 (556)
Q Consensus 263 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (556)
.+......+...|++++|+..+++..+.... +...+..+...+...|++++|.+.++.+.+....++
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------ 71 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK------------ 71 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh------------
Confidence 3444556667777777777777777664321 233555666667777777777766666655221111
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHH
Q 008727 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422 (556)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 422 (556)
.....+..+...+...|++++|.+.++...+..+. +...+..+...|...|++++|...
T Consensus 72 --------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 72 --------------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp --------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHH
Confidence 11223444555555556666666666555554332 444555566666666666666666
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHC
Q 008727 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE---IEGALRLFHNMLEK 499 (556)
Q Consensus 423 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~ 499 (556)
+++..+.... +...|..+...+...+++++|.+.|+++.+.. +.+...+..+..++...|+ +++|...++++.+.
T Consensus 131 ~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 131 MEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 6655554221 34444444422223346666666666665542 2234555555555555555 55555555555443
Q ss_pred C-CCCC------HhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 500 G-VAPD------ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 500 g-~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
. -.|+ ...|..+...|.+.|++++|.+.++++.+.++
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 1 1122 13455555556666666666666666655543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-11 Score=111.91 Aligned_cols=226 Identities=11% Similarity=0.014 Sum_probs=163.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHcCCCCCCHHHHH
Q 008727 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV----ERRICEAKELGEVIVSGKFTIDDDVLN 335 (556)
Q Consensus 260 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (556)
+..++..+...+...|++++|.+.|++..+.+ +...+..+...+.. .+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~------------------------- 56 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEK------------------------- 56 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-------------------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCC-------------------------
Confidence 34455555556666666666666666655521 22233333344444 44
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHH
Q 008727 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK----RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411 (556)
Q Consensus 336 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 411 (556)
++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.
T Consensus 57 ---------~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 57 ---------NLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYH 121 (273)
T ss_dssp ---------CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHH
Confidence 4555555555555554 55666667777777 888888888888888764 6677888888888
Q ss_pred h----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-
Q 008727 412 T----SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE- 482 (556)
Q Consensus 412 ~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~- 482 (556)
. .+++++|+..+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHG 195 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 8 888999999998888865 56677777778877 888999999999888754 45677788888888
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHhhhCCCc
Q 008727 483 ---VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ----ETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 483 ---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 537 (556)
.+++++|.+.|++..+.+ +...+..+...|.+ .+++++|.+++++..+.++.
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 899999999999988774 25667777888888 88999999999988887754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-12 Score=116.77 Aligned_cols=236 Identities=8% Similarity=-0.026 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC--ChHhHHHHHH
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI--GPEICNSLLA 162 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~ 162 (556)
..+......+...|++++|...|+++.+.. +.+...+..+...+...|++++|+..+++.......+ ...+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345566677778888888888888887765 3455677778888888888888888888887733221 1234788888
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCH
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 242 (556)
.+...|++++|.+.|++..+... .+..++..+...+...|++++|++.++..... .|.+...+..+...+...+++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---TTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---CCCcHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877542 24567777778888888888888888877755 556666676666233334588
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC-CCCCh------hhHHHHHHHHHhcCCH
Q 008727 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS---VFEREVVLKKKRKLG-VAPRT------NDYREFILGLIVERRI 312 (556)
Q Consensus 243 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~------~~~~~ll~~~~~~~~~ 312 (556)
++|.+.|++..+.. +.+...+..+...+...|+ +++|...+++..+.. ..|+. ..+..+...+...|++
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 88888888877652 1235666667777777776 777777777766542 12221 3455566667777777
Q ss_pred HHHHHHHHHHHcCC
Q 008727 313 CEAKELGEVIVSGK 326 (556)
Q Consensus 313 ~~a~~~~~~~~~~~ 326 (556)
++|.+.++.+.+..
T Consensus 238 ~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 238 VKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 77777777766543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-11 Score=110.27 Aligned_cols=224 Identities=12% Similarity=-0.022 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCChHhHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ----GKNTQKAFSVFNEVKFNCEDIGPEICN 158 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (556)
++..+..+...+...|++++|.+.|+...+.+ +...+..+...|.. .+++++|...|++..+.+ ++.++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56677777777888888888888888887743 55677777788888 888888888888887765 677788
Q ss_pred HHHHHHHh----cCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHh----hCcHHHHHHHHHHHHhccCCCCCchhhHH
Q 008727 159 SLLAVLAS----DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE----NAKLGQVLSMLDEVRKRENSMINGSVIAV 230 (556)
Q Consensus 159 ~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 230 (556)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|++.|+...+. + +...+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~----~~~a~~ 150 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N----DGDGCT 150 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T----CHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C----cHHHHH
Confidence 88888888 888888888888887765 55666667777777 78888888888877765 2 344555
Q ss_pred HHHHHHhc----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 008727 231 LIIHGFCK----GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL----MGSVFEREVVLKKKRKLGVAPRTNDYREF 302 (556)
Q Consensus 231 ~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 302 (556)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|.+.+++..+.+. ...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHH
Confidence 66666666 778888888887777653 45666667777777 7777777777777766542 3344555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHcCC
Q 008727 303 ILGLIV----ERRICEAKELGEVIVSGK 326 (556)
Q Consensus 303 l~~~~~----~~~~~~a~~~~~~~~~~~ 326 (556)
...+.. .+++++|.+.++...+.+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 555555 666666666666655543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=6.1e-12 Score=119.20 Aligned_cols=234 Identities=9% Similarity=-0.032 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCC-hHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 84 PLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN-TQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
...|..+..++...|++++|+..++.+++.. +-+...|..+...+...|+ +++|+..|+++....+. +..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4667788888899999999999999999876 5678899999999999996 99999999999987655 8889999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhc-cCC
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK-GKR 241 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~ 241 (556)
++...|++++|+..|+++.+.+. -+...|..+..++...|++++|+..++++... .|.+..+|+.+...+.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCc
Confidence 99999999999999999998753 36678888999999999999999999999987 77788899999999988 666
Q ss_pred HHHH-----HHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC----
Q 008727 242 VEEA-----FKVLDELRIRECKPDFIAYRIVAEEFKLMG--SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER---- 310 (556)
Q Consensus 242 ~~~A-----~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---- 310 (556)
.++| ++.|++...... -+...|..+...+...| ++++|++.+.++ + ....+...+..+...+.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 478888776532 25678888888888887 688999988887 2 22234456667777777763
Q ss_pred -----CHHHHHHHHHHH-HcCC
Q 008727 311 -----RICEAKELGEVI-VSGK 326 (556)
Q Consensus 311 -----~~~~a~~~~~~~-~~~~ 326 (556)
..++|.++++.+ .+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHHHhC
Confidence 257888888887 5543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=8.1e-12 Score=112.19 Aligned_cols=193 Identities=13% Similarity=0.043 Sum_probs=157.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHH
Q 008727 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (556)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 420 (556)
+..|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...|...|++++|.
T Consensus 48 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~ 125 (252)
T 2ho1_A 48 LQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLYEQKRYEEAY 125 (252)
T ss_dssp HHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHHhHHHHHH
Confidence 34567777777777776654 335677888888899999999999999998876543 6778888999999999999999
Q ss_pred HHHHHHHHCCCCC-CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 421 GVIQEMKRKGLDP-DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 421 ~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
++++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.++++.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 126 QRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp HHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999988733344 45678888889999999999999999998864 456788889999999999999999999999865
Q ss_pred CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 500 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
. +.+...+..+...+.+.|++++|.++++++.+.++.
T Consensus 205 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 205 G-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp S-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred C-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 3 335677888888899999999999999999887643
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=6.6e-12 Score=118.99 Aligned_cols=234 Identities=9% Similarity=0.016 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 008727 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR-ICEAKELGEVIVSGKFTIDDDVLNALIGS 340 (556)
Q Consensus 262 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (556)
..|..+...+...|++++|++.+++.++.... +...|..+...+...|+ +++|...++.++...+.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------------ 164 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------------ 164 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC------------
Confidence 45566666666777777777777776664221 23345555555556664 66666655555544322
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHH
Q 008727 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (556)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 420 (556)
+...|..+..++...|++++|+..|+++.+..+. +...|..+..++...|++++|+
T Consensus 165 -----------------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 165 -----------------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHH
T ss_pred -----------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHH
Confidence 3455555555666666666666666666665544 5566666666666666677777
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhh-cCChhhH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHccC--CHHHHHHH
Q 008727 421 GVIQEMKRKGLDPDVSFYNSLMEACCR-EDLLRPA-----KKLWDQMFASGCSGNLKTYNILISKFSEVG--EIEGALRL 492 (556)
Q Consensus 421 ~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~ 492 (556)
..++++++.... +...|+.+..++.. .|..++| ++.+++.++.. +-+...|+.+...+...| ++++|++.
T Consensus 221 ~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~ 298 (382)
T 2h6f_A 221 QYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQ 298 (382)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHH
Confidence 777666665443 55666666666666 4444555 35666666543 334556666666666666 46666666
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccC---------CHHHHHHHHHHh-hhCCC
Q 008727 493 FHNMLEKGVAPDATTYTSLLEGLCQET---------NLQAAFEVFNKS-VNHDV 536 (556)
Q Consensus 493 ~~~m~~~g~~p~~~~~~~l~~~~~~~g---------~~~~a~~~~~~m-~~~~~ 536 (556)
+.++ +. -..+...+..+...|.+.| ..++|+++++++ .+.++
T Consensus 299 ~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 299 LLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc
Confidence 6665 22 2224455566666665543 246677777766 55554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.1e-12 Score=110.69 Aligned_cols=204 Identities=11% Similarity=-0.022 Sum_probs=153.8
Q ss_pred CCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHH
Q 008727 117 LDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196 (556)
Q Consensus 117 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 196 (556)
.+...+..+...+...|++++|.+.|+.+.+.... +..++..+...+...|++++|.+.|++..+.. +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 35667788888888899999999999888776433 67788888888888899999999988887754 23556777788
Q ss_pred HHHHhh-CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008727 197 WKFCEN-AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275 (556)
Q Consensus 197 ~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 275 (556)
..+... |++++|...++.+... +..+.....+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 888888 8888888888888872 4456666777788888888888888888888877653 224677777888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 008727 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324 (556)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (556)
++++|...+++..+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888888888877654323444555556666777777777777666654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-12 Score=116.47 Aligned_cols=202 Identities=9% Similarity=0.001 Sum_probs=136.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
.++..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++...... +..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 345566677777778888888888888887754 456777888888888888888888888888766433 677888888
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 241 (556)
..+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+... .|.+...+..+...+.+.|+
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCC
Confidence 88888888888888888877754 235566777777788888888888888887766 45556677777888888888
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 242 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
+++|.+.|++..+.. ..+..++..+...+...|++++|.+.++++.+.
T Consensus 175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 888888888776653 235667777777788888888888888777664
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-12 Score=117.02 Aligned_cols=182 Identities=9% Similarity=-0.134 Sum_probs=91.5
Q ss_pred CChHHHHHHHHHHHhCCCC---CChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHH
Q 008727 133 KNTQKAFSVFNEVKFNCED---IGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209 (556)
Q Consensus 133 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 209 (556)
|++++|+..|+++.+.... .+..+|..+...+...|++++|.+.|++..+.+. .+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555443211 1234555555555555555555555555554321 23445555555555555555555
Q ss_pred HHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
+.|+.+... .|.+..++..+...|.+.|++++|.+.|+++.+. .|+.......+..+...|++++|...+++...
T Consensus 98 ~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 98 EAFDSVLEL---DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 555555554 3344555566666666666666666666666554 23333333333444455666666666655554
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVI 322 (556)
Q Consensus 290 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 322 (556)
... ++ .....+...+...++.++|.+.+...
T Consensus 173 ~~~-~~-~~~~~~~~~~~~~~~~~~a~~~~~~~ 203 (275)
T 1xnf_A 173 KSD-KE-QWGWNIVEFYLGNISEQTLMERLKAD 203 (275)
T ss_dssp HSC-CC-STHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred cCC-cc-hHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 321 11 11222333444444444444444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-12 Score=114.28 Aligned_cols=169 Identities=13% Similarity=0.137 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 444 (556)
...+..+...+...|++++|.+.++.+.+.... +...+..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 134 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTV 134 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 444555555566666666666666665554332 4555666666666666666666666666654322 45556666666
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHH
Q 008727 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 524 (556)
+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+..++..+...|.+.|++++|
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHH
Confidence 666666666666666666543 3345566666666666666666666666666542 22455566666666666666666
Q ss_pred HHHHHHhhhCCCc
Q 008727 525 FEVFNKSVNHDVM 537 (556)
Q Consensus 525 ~~~~~~m~~~~~~ 537 (556)
.+.++++.+.++.
T Consensus 213 ~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 213 LEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHccCcc
Confidence 6666666665543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-11 Score=105.54 Aligned_cols=169 Identities=14% Similarity=0.113 Sum_probs=148.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 008727 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443 (556)
Q Consensus 364 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 443 (556)
+..+|..+...|.+.|++++|++.|++..+..+. +...+..+...|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 5678888999999999999999999999887665 7788999999999999999999999999887544 6777888888
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHH
Q 008727 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523 (556)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 523 (556)
.+...++++.|.+.+.+..+.. +.+...+..+..+|.+.|++++|++.|++..+... -+...|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998864 55688899999999999999999999999987642 367788999999999999999
Q ss_pred HHHHHHHhhhCCC
Q 008727 524 AFEVFNKSVNHDV 536 (556)
Q Consensus 524 a~~~~~~m~~~~~ 536 (556)
|++.|++.++.++
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999988764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-09 Score=107.31 Aligned_cols=438 Identities=9% Similarity=-0.011 Sum_probs=263.3
Q ss_pred CCHHHHHHHhhhhhc-cChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhHhCC-CCCCHHh
Q 008727 47 LSPSLVARVINPYLL-THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQ---INAIDSVLKQVKVNK-ITLDSSV 121 (556)
Q Consensus 47 ~~~~~~~~~l~~~~~-~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 121 (556)
.+...-.+.++.... +....+...|+.+.... +.+...|...+..-.+.++ ++.+..+|++..... .+|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 455555556655443 34566777787776553 4677888888888888888 999999999998864 2488888
Q ss_pred HHHHHHHHHcCCCh--------HHHHHHHHHHHh-CCC-CC-ChHhHHHHHHHHHh---------cCCHhHHHHHHHHHH
Q 008727 122 YRFIIPSLIQGKNT--------QKAFSVFNEVKF-NCE-DI-GPEICNSLLAVLAS---------DGYIDNALKMFDEMS 181 (556)
Q Consensus 122 ~~~li~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~ 181 (556)
|..-+....+.++. +...++|+.... .|. .+ +...|...+..... .++++.+..+|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88877766665543 344578887654 455 44 45689888877653 345778899999988
Q ss_pred hCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhh--CCCC-
Q 008727 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI--RECK- 258 (556)
Q Consensus 182 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--~~~~- 258 (556)
......-..+|.... .+.+.-+...+.+++.+. ..+++.|...+.++.. .++.
T Consensus 222 ~iP~~~~~~~w~~Y~-~fe~~~~~~~a~~~~~e~-----------------------~~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 222 CQPMDCLESMWQRYT-QWEQDVNQLTARRHIGEL-----------------------SAQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp TSCCSSHHHHHHHHH-HHHHHHCTTTHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHTTTCCC
T ss_pred hCccHHHHHHHHHHH-HHHHhcCcchHHHHHHHh-----------------------hHHHHHHHHHHHHHHHHHHhHhh
Confidence 532211122333222 111110000111111111 1122333333333211 0100
Q ss_pred --------------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 008727 259 --------------P-----D---FIAYRIVAEEFKLMG-------SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309 (556)
Q Consensus 259 --------------p-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 309 (556)
| + ...|...+.---..+ ..+.+..+|++.+..- .-....|.....-+...
T Consensus 278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~ 356 (679)
T 4e6h_A 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEK 356 (679)
T ss_dssp CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHH
T ss_pred ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Confidence 1 0 123333333222211 1233455676666542 22445666666666677
Q ss_pred CCHHHHH-HHHHHHHcCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcC---------CCCC------------HH
Q 008727 310 RRICEAK-ELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKG---------RVPT------------LS 366 (556)
Q Consensus 310 ~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~ 366 (556)
|+.++|. ++++......+ .+...|-..+.. ...|+++.|.++|+.+.+.. ..|+ ..
T Consensus 357 ~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp SCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 8888886 88888876433 344444444444 33578888888888877531 0132 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS-GRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 445 (556)
+|...+....+.|+.+.|..+|....+.........|...+..-.+. ++.+.|..+|+...+.- .-+...|...+...
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-ATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 56777777778889999999999988761112233443333333333 45899999999888762 23566667778877
Q ss_pred hhcCChhhHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 008727 446 CREDLLRPAKKLWDQMFASGCS--GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515 (556)
Q Consensus 446 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 515 (556)
...|+.+.|..+|++....... -....|...+..-.+.|+.+.+.++.+++.+. .|+......++.-|
T Consensus 515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 8889999999999999876421 13467888888888899999999999999876 34544444444444
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.5e-12 Score=120.39 Aligned_cols=132 Identities=14% Similarity=0.069 Sum_probs=72.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCC-CHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGL-DPD----VSFYNSLMEACCREDLLRPAKKLWDQMFAS----GCSG-NLK 471 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 471 (556)
++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+. +..+ ...
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 455566666666666666666665543210 011 225566666666666666666666665532 1000 034
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 472 TYNILISKFSEVGEIEGALRLFHNMLEKGV-APD----ATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
++..+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|.+.+++..+
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666666666666666666666654210 001 33455566666666666666666666543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.8e-12 Score=122.23 Aligned_cols=134 Identities=14% Similarity=0.052 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-cc----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCH
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYF-TD----MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-----PDV 435 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~ 435 (556)
..+..+...+...|++++|...+++..+.... ++ ...+..+...|...|++++|...+++..+.... ...
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 303 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35555666677777777777777766542110 01 225666667777777777777777765543110 013
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 436 SFYNSLMEACCREDLLRPAKKLWDQMFAS----GC-SGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.++..+...|...|++++|.+.+++..+. +. .....++..+...|...|++++|.+.+++..+.
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666666677777777777777666543 10 011335556666666777777777777666643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.6e-12 Score=120.37 Aligned_cols=99 Identities=17% Similarity=0.053 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC----HHhHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCC-C
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD----SSVYRFIIPSLIQGKNTQKAFSVFNEVKFN----CEDI-G 153 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 153 (556)
....+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|...+++.... +..+ .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34444455555556666666666666655543 122 234555555555566666666655554321 1111 1
Q ss_pred hHhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008727 154 PEICNSLLAVLASDGYIDNALKMFDEMSH 182 (556)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (556)
..++..+...+...|++++|...+++..+
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 115 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLD 115 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23444555555555555555555555443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.2e-12 Score=120.84 Aligned_cols=280 Identities=14% Similarity=0.064 Sum_probs=198.1
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-Ch
Q 008727 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF----IAYRIVAEEFKLMGSVFEREVVLKKKRKL----GVAP-RT 296 (556)
Q Consensus 226 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 296 (556)
...+..+...+...|++++|.+.|++..+.+.. +. ..|..+...+...|++++|...+++..+. +..| ..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344456777888899999999999988876322 22 46777888888899999999988877653 1111 22
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHH
Q 008727 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR-VPTLSTLSNLSKNL 375 (556)
Q Consensus 297 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~ 375 (556)
..+..+...+...|++++|...++...+. +... +. .....++..+...|
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------------------~~~~---~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTL---------------------------ARQL---GDRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------HHHH---TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------------------HHHh---hchHHHHHHHHHHHHHH
Confidence 34555666777777777777776654331 1111 11 11234566677778
Q ss_pred HhcCC-----------------hHHHHHHHHHHHhC----CC-CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-
Q 008727 376 CKRNK-----------------SDELVEVYKVLSAN----DY-FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD- 432 (556)
Q Consensus 376 ~~~g~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~- 432 (556)
...|+ +++|.+.+++..+. +. ......+..+...|...|++++|...+++..+....
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 88888 88888888776442 11 113347888889999999999999999987764211
Q ss_pred CC----HhHHHHHHHHHhhcCChhhHHHHHHHHHHcC--CC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----
Q 008727 433 PD----VSFYNSLMEACCREDLLRPAKKLWDQMFASG--CS---GNLKTYNILISKFSEVGEIEGALRLFHNMLEK---- 499 (556)
Q Consensus 433 p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 499 (556)
++ ..++..+...|...|++++|.+.+++..+.. .. ....++..+...|...|++++|.+.+++..+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 12 2378889999999999999999999887641 00 12567888999999999999999999998764
Q ss_pred CC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 500 GV-APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 500 g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
+. .....++..+...|.+.|++++|.+++++..+...
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 11 11134677888999999999999999999876543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-10 Score=107.34 Aligned_cols=219 Identities=7% Similarity=-0.016 Sum_probs=164.6
Q ss_pred hHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH-------hcCCh-------hHHHHHHHHhHhCCCCCCHHhHHHHHHHHH
Q 008727 65 SLALGFFNWASQQPNFTHSPLSYHSILKSLS-------LSRQI-------NAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130 (556)
Q Consensus 65 ~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 130 (556)
+.|+..|+.+.... +.++..|..++..+. +.|++ ++|..+|++..+.-.+-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45666777665533 246778887777765 35776 889999999888422456778888999999
Q ss_pred cCCChHHHHHHHHHHHhCCCCCChH-hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHH-hhCcHHHH
Q 008727 131 QGKNTQKAFSVFNEVKFNCEDIGPE-ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC-ENAKLGQV 208 (556)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a 208 (556)
+.|++++|.++|+++.+..+. +.. +|..++..+.+.|++++|.++|++..+.+. .+...|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999875332 344 899999999999999999999999887642 23444443332222 26899999
Q ss_pred HHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008727 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE-CKP--DFIAYRIVAEEFKLMGSVFEREVVLK 285 (556)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~ 285 (556)
..+|+...+. .|.+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..+++
T Consensus 189 ~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 189 FKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999888876 55667888888888888899999999999888763 344 45678888888888888888888888
Q ss_pred HHHhc
Q 008727 286 KKRKL 290 (556)
Q Consensus 286 ~~~~~ 290 (556)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-11 Score=102.02 Aligned_cols=167 Identities=7% Similarity=-0.078 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
++..|..+...+.+.|++++|.+.|++..+.. |-+...+..+...|.+.|++++|...++........ +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 44556666666666666666666666666554 345556666666666666666666666666554332 4555555556
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCH
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 242 (556)
.+...++++.|.+.+.+..+... .+...+..+...+...|++++|++.|++..+. .|.+..++..+...|.+.|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---KPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---cchhhhHHHHHHHHHHHCCCH
Confidence 66666666666666666555321 23444555555555666666666666655554 344455555555566666666
Q ss_pred HHHHHHHHHHhhC
Q 008727 243 EEAFKVLDELRIR 255 (556)
Q Consensus 243 ~~A~~~~~~m~~~ 255 (556)
++|.+.|++..+.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 6666666555543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.1e-10 Score=105.12 Aligned_cols=219 Identities=7% Similarity=-0.047 Sum_probs=167.9
Q ss_pred hHHHHHHHHhHhCCCCCCHHhHHHHHHHHH-------cCCCh-------HHHHHHHHHHHh-CCCCCChHhHHHHHHHHH
Q 008727 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLI-------QGKNT-------QKAFSVFNEVKF-NCEDIGPEICNSLLAVLA 165 (556)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~ 165 (556)
++|..+|+++.... +.+...|..++..+. +.|++ ++|..+|++... ..+ -+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 67888898888864 567888888887775 35886 899999999988 333 36779999999999
Q ss_pred hcCCHhHHHHHHHHHHhCCCccC-hh-hHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHH-hccCCH
Q 008727 166 SDGYIDNALKMFDEMSHRGVEFS-TI-GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF-CKGKRV 242 (556)
Q Consensus 166 ~~g~~~~a~~~~~~m~~~~~~~~-~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~ 242 (556)
+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+. .|.....|....... ...|++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCH
Confidence 999999999999999885 344 33 7888888888999999999999999876 344455554433332 236999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCC--hhhHHHHHHHHHhcCCHHHHHHHH
Q 008727 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG-VAPR--TNDYREFILGLIVERRICEAKELG 319 (556)
Q Consensus 243 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~ 319 (556)
++|.++|+...+.. .-+...|..++..+.+.|+.++|..+|++..... ..|+ ...|..++....+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999887652 2266788888888888999999999999988863 3443 446677777777788888888887
Q ss_pred HHHHcCCC
Q 008727 320 EVIVSGKF 327 (556)
Q Consensus 320 ~~~~~~~~ 327 (556)
+.+.+..+
T Consensus 265 ~~a~~~~p 272 (308)
T 2ond_A 265 KRRFTAFR 272 (308)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcc
Confidence 77765433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.5e-11 Score=112.92 Aligned_cols=155 Identities=12% Similarity=0.061 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHhC----C-CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHhhcCC
Q 008727 381 SDELVEVYKVLSAN----D-YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-PD----VSFYNSLMEACCREDL 450 (556)
Q Consensus 381 ~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~ 450 (556)
+++|.+.++...+. + .......+..+...+...|++++|...+++..+.... ++ ..++..+...+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 67777666654331 1 1112346777888888999999999999887653111 11 2377888888999999
Q ss_pred hhhHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHccCC
Q 008727 451 LRPAKKLWDQMFASGC-SGN----LKTYNILISKFSEVGEIEGALRLFHNMLEK----GVA-PDATTYTSLLEGLCQETN 520 (556)
Q Consensus 451 ~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~l~~~~~~~g~ 520 (556)
+++|.+.+++..+..- ..+ ..++..+...|...|++++|.+.+++..+. +-. ....++..+...|.+.|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999988875310 111 557788889999999999999999988754 111 113467778888999999
Q ss_pred HHHHHHHHHHhhhCC
Q 008727 521 LQAAFEVFNKSVNHD 535 (556)
Q Consensus 521 ~~~a~~~~~~m~~~~ 535 (556)
+++|...+++..+..
T Consensus 319 ~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 319 HDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999987654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.2e-11 Score=114.29 Aligned_cols=232 Identities=9% Similarity=0.018 Sum_probs=149.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 008727 269 EEFKLMGSVFEREVVLKKKRKLGV-APR----TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343 (556)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (556)
..+...|++++|...+++..+.-. .++ ...+..+...+...|+++.|...+....+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~------------------- 171 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE------------------- 171 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------
Confidence 345566666666666666654310 111 12444555556666666666665544332
Q ss_pred CChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-ccHhhHHHHHHHHHhcCCH
Q 008727 344 IDPRSAIVFFNFMIEKGR--VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN----DYF-TDMESYNVMVSFLCTSGRL 416 (556)
Q Consensus 344 ~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~ 416 (556)
++.. .+. .....++..+...|...|++++|...+++..+. +-. ....++..+...|...|++
T Consensus 172 --------~~~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 172 --------IYKE---HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp --------HHHT---CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred --------HHHh---CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH
Confidence 1111 000 001345666777788888888888888876642 111 1123778888889999999
Q ss_pred HHHHHHHHHHHHC----CC-CCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCCCHHHHHHHHHHHHccCC--
Q 008727 417 REAYGVIQEMKRK----GL-DPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS----GCSGNLKTYNILISKFSEVGE-- 485 (556)
Q Consensus 417 ~~a~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~-- 485 (556)
++|.+.+++..+. +. .....++..+...|...|++++|.+.+++..+. +-+.....+..+...|...|+
T Consensus 241 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 320 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE 320 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHH
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 9999999887762 22 223567888888999999999999999887753 212223345677788888888
Q ss_pred -HHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 486 -IEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 486 -~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
.++|+.++++. +..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 321 ~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 321 AIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67777777665 33332 34567788889999999999999998754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.6e-11 Score=112.90 Aligned_cols=134 Identities=13% Similarity=0.029 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----H
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDY-----FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-PD----V 435 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~ 435 (556)
..+..+...+...|++++|...+++..+... .....++..+...+...|++++|...+++..+.... ++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 4566677788889999999998888664211 112337788888899999999999999987653111 11 4
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 436 SFYNSLMEACCREDLLRPAKKLWDQMFAS----GCS-GNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.++..+...+...|++++|...++++.+. +-. ....++..+...|...|++++|.+.+++..+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 57788889999999999999999988753 111 11457788899999999999999999999865
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.2e-12 Score=116.82 Aligned_cols=248 Identities=12% Similarity=0.034 Sum_probs=139.8
Q ss_pred CCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----
Q 008727 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-------ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL----- 290 (556)
Q Consensus 223 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 290 (556)
|....++..+...+...|++++|..+|+++.+. ........+..+...+...|++++|...+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 334556667777777788888888877777652 11223456677777778888888888888776653
Q ss_pred -CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 008727 291 -GVAP-RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368 (556)
Q Consensus 291 -~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 368 (556)
+-.| ....+..+...+...|++++|.+.++.+.+. ...............+
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---------------------------~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI---------------------------REKVLGKDHPDVAKQL 156 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---------------------------HHHHHCTTCHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH---------------------------HHHhcCCCChHHHHHH
Confidence 1112 2334556666777777777777766554331 1111111111124456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC------CCCc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC
Q 008727 369 SNLSKNLCKRNKSDELVEVYKVLSAN------DYFT-DMESYNVMVSFLCTSGRLREAYGVIQEMKRK-------GLDPD 434 (556)
Q Consensus 369 ~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~ 434 (556)
..+...+...|++++|.++++.+.+. +..| ...++..+...|...|++++|.+.++++.+. ...+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 66777788888888888888877653 1112 3446777888888888888888888887653 11111
Q ss_pred H-------hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 435 V-------SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 435 ~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
. ..+..+...+...+.+.++...++...... +.+..++..+..+|.+.|++++|.+.|++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 112222233334455555555555555432 23445566666677777777777777766654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-10 Score=109.05 Aligned_cols=235 Identities=9% Similarity=-0.053 Sum_probs=163.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC-----hhhHH
Q 008727 232 IIHGFCKGKRVEEAFKVLDELRIR----ECKP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA-PR-----TNDYR 300 (556)
Q Consensus 232 li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~ 300 (556)
....+...|++++|.+.|++..+. +-.+ ...++..+...+...|++++|...+.+..+.-.. ++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677888999999988887653 1111 2356777888888899999999888877654111 11 22455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcC
Q 008727 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLCKRN 379 (556)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g 379 (556)
.+...|...|++++|.+.++...+. ... .+.. ....++..+...|...|
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~---------------------------~~~---~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSM---------------------------AEA---EKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---------------------------HHH---TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH---------------------------HHH---cCChHHHHHHHHHHHHHHHHCC
Confidence 6666777778888777776655431 111 1101 11245677888899999
Q ss_pred ChHHHHHHHHHHHh-----CCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHhHHHHHHHHHhhcCC
Q 008727 380 KSDELVEVYKVLSA-----NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG----LDPDVSFYNSLMEACCREDL 450 (556)
Q Consensus 380 ~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~ll~~~~~~~~ 450 (556)
++++|.+.+++..+ ...+....++..+...|.+.|++++|...+++..+.. -......+..+...+...|+
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 99999999988776 3313346678889999999999999999999876531 11122335678888888898
Q ss_pred ---hhhHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 451 ---LRPAKKLWDQMFASGCSG-NLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 451 ---~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+++|..++++. +..| ....+..+...|...|++++|.+.+++..+.
T Consensus 319 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 319 EEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 67777777665 2233 3456778899999999999999999998753
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.7e-11 Score=111.52 Aligned_cols=177 Identities=10% Similarity=-0.010 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhC-------CCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhC------C
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVN-------KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN------C 149 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~ 149 (556)
+...+..+...+...|++++|..+++++.+. ..+.....+..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456666677777777777777777776652 12233445556666666666666666666665432 1
Q ss_pred C-CCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhh
Q 008727 150 E-DIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI 228 (556)
Q Consensus 150 ~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 228 (556)
. +....++..+...+...|++++|.+.|++..+.. +.. ..+..+....+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~--~~~~~~~~~~~ 155 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKV--LGKDHPDVAKQ 155 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHH--HCTTCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHh--cCCCChHHHHH
Confidence 1 1123344555555555555555555555443310 000 00112223444
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 229 AVLIIHGFCKGKRVEEAFKVLDELRIR------ECKP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 229 ~~~li~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
+..+...+...|++++|.+.|++..+. +..| ...++..+...+...|++++|.+.++++.+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666666667777777666665442 1122 223455566666666777766666666544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.9e-11 Score=117.44 Aligned_cols=214 Identities=10% Similarity=-0.050 Sum_probs=174.4
Q ss_pred ChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCCh-HHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHH
Q 008727 99 QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT-QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177 (556)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 177 (556)
.++++.+.++...... +.+...+..+...+...|++ ++|++.|++..+..+. +..+|..+..+|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566677777666543 45788899999999999999 9999999999887543 6889999999999999999999999
Q ss_pred HHHHhCCCccChhhHHHHHHHHHhh---------CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhcc--------C
Q 008727 178 DEMSHRGVEFSTIGFGVFIWKFCEN---------AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG--------K 240 (556)
Q Consensus 178 ~~m~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~ 240 (556)
++..+.. |+...+..+...+... |++++|++.|++..+. .|.+...|..+...|... |
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccc
Confidence 9998865 5668888888889898 9999999999999887 677788888899999888 8
Q ss_pred CHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008727 241 RVEEAFKVLDELRIRECK--PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318 (556)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 318 (556)
++++|.+.|++..+.... -+...|..+..+|...|++++|.+.|++..+.... +...+..+...+...|++++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998875210 27788999999999999999999999998876422 344566677777777887777765
Q ss_pred HH
Q 008727 319 GE 320 (556)
Q Consensus 319 ~~ 320 (556)
+.
T Consensus 315 ~~ 316 (474)
T 4abn_A 315 KG 316 (474)
T ss_dssp TT
T ss_pred hc
Confidence 43
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.7e-11 Score=116.04 Aligned_cols=212 Identities=8% Similarity=-0.035 Sum_probs=179.7
Q ss_pred hHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHH
Q 008727 65 SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143 (556)
Q Consensus 65 ~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 143 (556)
..++..+....... +.+...|..+...+...|++ ++|.+.|++..+.. +.+...+..+...|...|++++|.+.|+
T Consensus 85 ~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 85 EKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34556666543332 35788888999999999999 99999999999876 5578899999999999999999999999
Q ss_pred HHHhCCCCCChHhHHHHHHHHHhc---------CCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhh--------CcHH
Q 008727 144 EVKFNCEDIGPEICNSLLAVLASD---------GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN--------AKLG 206 (556)
Q Consensus 144 ~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~ 206 (556)
+..+.. |+..++..+...+... |++++|++.|++..+... -+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999874 5678999999999999 999999999999988653 3567888889999988 9999
Q ss_pred HHHHHHHHHHhccCCCC---CchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008727 207 QVLSMLDEVRKRENSMI---NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283 (556)
Q Consensus 207 ~a~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 283 (556)
+|++.|++.... .| .+...|..+...|...|++++|.+.|++..+... -+...+..+...+...|++++|++.
T Consensus 239 ~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 239 QALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 45 6788899999999999999999999999887632 2566788888888899999988876
Q ss_pred HHH
Q 008727 284 LKK 286 (556)
Q Consensus 284 ~~~ 286 (556)
+.+
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-10 Score=98.13 Aligned_cols=167 Identities=13% Similarity=0.081 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 445 (556)
..+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|...++++.+... .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 34556667788889999999999888776543 677888888999999999999999999887643 3677888888999
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 008727 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525 (556)
Q Consensus 446 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 525 (556)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999988764 5677888889999999999999999999988764 335778888889999999999999
Q ss_pred HHHHHhhhCCC
Q 008727 526 EVFNKSVNHDV 536 (556)
Q Consensus 526 ~~~~~m~~~~~ 536 (556)
+.++++.+.++
T Consensus 165 ~~~~~~~~~~~ 175 (186)
T 3as5_A 165 PHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHcCC
Confidence 99998876543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=3e-09 Score=101.51 Aligned_cols=295 Identities=12% Similarity=0.021 Sum_probs=146.8
Q ss_pred HHHhccCCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCh----hhHHHHHH
Q 008727 234 HGFCKGKRVEEAFKVLDELRIRECKPDFI----AYRIVAEEFKLMGSVFEREVVLKKKRKLGVA-PRT----NDYREFIL 304 (556)
Q Consensus 234 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~ll~ 304 (556)
..+...|++++|...+++........+.. .++.+...+...|++++|...+++....... .+. ..+..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445566666666666654432111211 3344445555666666666666655442110 111 12334445
Q ss_pred HHHhcCCHHHHHHHHHHHHcC----CCC--CCH-HHHHHHH-HHHhcCChhHHHHHHHHHHHcCCCC----CHHHHHHHH
Q 008727 305 GLIVERRICEAKELGEVIVSG----KFT--IDD-DVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVP----TLSTLSNLS 372 (556)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~----~~~--~~~-~~~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ll 372 (556)
.+...|++++|...++...+. +.. +.. ..+..+- ..+..|++++|...+++........ ....+..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 666677777777766655432 111 111 1222222 2244567777777776665443221 123455555
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCcc-HhhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHH
Q 008727 373 KNLCKRNKSDELVEVYKVLSANDYFTD-MESYN-----VMVSFLCTSGRLREAYGVIQEMKRKGLDPD---VSFYNSLME 443 (556)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~ 443 (556)
..+...|++++|...++........++ ...+. ..+..+...|+.++|...+++.......+. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 666667777777777766554211111 11111 122335566777777777666554322111 123455556
Q ss_pred HHhhcCChhhHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 008727 444 ACCREDLLRPAKKLWDQMFAS----GCSGNL-KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518 (556)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 518 (556)
.+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++.....- . ...+..+...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~~~~~~~~ 335 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGFISHFVIE 335 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCCCHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccHHHHHHHc
Confidence 666667777777766665432 211122 2445555666666777777777776665410 0 1112233344
Q ss_pred CCHHHHHHHHHHhhhCCC
Q 008727 519 TNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 519 g~~~~a~~~~~~m~~~~~ 536 (556)
| +....+++++....+
T Consensus 336 g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 336 G--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp H--HHHHHHHHHHHHTTC
T ss_pred c--HHHHHHHHHHHhCCC
Confidence 4 556666666655554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.3e-09 Score=101.20 Aligned_cols=295 Identities=11% Similarity=0.014 Sum_probs=161.5
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccCh----hhHHHHHHHHHhhCcHHHHHHHHHHHHhcc---CCCCCchhhHHHHHHH
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFST----IGFGVFIWKFCENAKLGQVLSMLDEVRKRE---NSMINGSVIAVLIIHG 235 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~li~~ 235 (556)
.+...|++++|...+++........+. .++..+...+...|++++|.+.+++..... +.......++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344445555555555554443211111 123333344445555555555555544320 0000011223445566
Q ss_pred HhccCCHHHHHHHHHHHhhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----hhhHHHHHH
Q 008727 236 FCKGKRVEEAFKVLDELRIR----ECK--P-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR----TNDYREFIL 304 (556)
Q Consensus 236 ~~~~~~~~~A~~~~~~m~~~----~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~ 304 (556)
+...|++++|.+.+++.... +.. | ....+..+...+...|++++|...+++......... ...+..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 66777777777777665432 111 2 123445566666777777777777776655322111 112333333
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHH----HHHHHHHhc
Q 008727 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP--TLSTLS----NLSKNLCKR 378 (556)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~----~ll~~~~~~ 378 (556)
.+...| ++++|...+++.......+ ...... ..+..+...
T Consensus 183 ~~~~~g----------------------------------~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (373)
T 1hz4_A 183 CSLARG----------------------------------DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 228 (373)
T ss_dssp HHHHHT----------------------------------CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcC----------------------------------CHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHC
Confidence 444444 4445555554443321111 122221 233447799
Q ss_pred CChHHHHHHHHHHHhCCCCc---cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-hHHHHHHHHHhhcCC
Q 008727 379 NKSDELVEVYKVLSANDYFT---DMESYNVMVSFLCTSGRLREAYGVIQEMKRK----GLDPDV-SFYNSLMEACCREDL 450 (556)
Q Consensus 379 g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~~~ 450 (556)
|++++|...++........+ ....+..+...+...|++++|...+++.... |..++. ..+..+..++...|+
T Consensus 229 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 308 (373)
T 1hz4_A 229 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308 (373)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCC
Confidence 99999999999887644321 1225677788899999999999999987653 222222 366777888899999
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.++|...+++..... +. ...+..+...| +....+++.+...
T Consensus 309 ~~~A~~~l~~al~~~--~~----~g~~~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 309 KSDAQRVLLDALKLA--NR----TGFISHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHHHHHHHHHHHHH--HH----HCCCHHHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--cc----ccHHHHHHHcc--HHHHHHHHHHHhC
Confidence 999999999998752 11 11223344444 5666677777655
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=5.7e-10 Score=94.49 Aligned_cols=161 Identities=11% Similarity=0.026 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHH
Q 008727 86 SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165 (556)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 165 (556)
.|..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.... +..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 34444555555666666666666555443 334555555555555566666666666555544221 4445555555555
Q ss_pred hcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHH
Q 008727 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245 (556)
Q Consensus 166 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 245 (556)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++.+... .|.+...+..+...+...|++++|
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554432 123333444444444444444444444444433 222333344444444444444444
Q ss_pred HHHHHHH
Q 008727 246 FKVLDEL 252 (556)
Q Consensus 246 ~~~~~~m 252 (556)
.+.++..
T Consensus 164 ~~~~~~~ 170 (186)
T 3as5_A 164 LPHFKKA 170 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-10 Score=116.40 Aligned_cols=165 Identities=17% Similarity=0.113 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 444 (556)
...++.+...+.+.|++++|++.|++..+..+. +...|+.+..+|.+.|++++|++.|++..+.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 567788888899999999999999998886654 6778889999999999999999999998887543 57788999999
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHH
Q 008727 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 524 (556)
|...|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++.++.... +...|..+...|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999988864 445788899999999999999999999998876322 467788888899999999999
Q ss_pred HHHHHHhhh
Q 008727 525 FEVFNKSVN 533 (556)
Q Consensus 525 ~~~~~~m~~ 533 (556)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.2e-09 Score=100.70 Aligned_cols=188 Identities=11% Similarity=-0.008 Sum_probs=132.9
Q ss_pred hcCChhHHHHHHHHHHHcC----C-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-ccHhhHHHHHHHH
Q 008727 342 SSIDPRSAIVFFNFMIEKG----R-VP-TLSTLSNLSKNLCKRNKSDELVEVYKVLSAN----DYF-TDMESYNVMVSFL 410 (556)
Q Consensus 342 ~~~~~~~a~~~~~~~~~~~----~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~ 410 (556)
..|+++.|+..+.+..+.. . .+ ...++..+...|...|++++|.+.+++..+. +.. ....++..+...|
T Consensus 153 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 232 (378)
T 3q15_A 153 HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSY 232 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3455566655555544321 1 11 2446677788889999999999998886652 211 1234678888899
Q ss_pred HhcCCHHHHHHHHHHHHH-----CCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcC----CCCCHHHHHHHHHHHH
Q 008727 411 CTSGRLREAYGVIQEMKR-----KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG----CSGNLKTYNILISKFS 481 (556)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~ 481 (556)
...|++++|.+.+++..+ .... ...++..+...|.+.|++++|...+++..+.. -+.....+..+...|.
T Consensus 233 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~ 311 (378)
T 3q15_A 233 DRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYK 311 (378)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHS
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999998876 4322 36778889999999999999999999988642 1222445666777777
Q ss_pred ccCC---HHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 482 EVGE---IEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 482 ~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
..|+ ..+|+..+++. +..|+ ...+..+...|...|++++|...+++..+
T Consensus 312 ~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 312 ETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888 77777777662 33222 34566788889999999999999998765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.3e-09 Score=100.61 Aligned_cols=165 Identities=9% Similarity=-0.114 Sum_probs=95.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCc-c----ChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCC----CCchhhH
Q 008727 159 SLLAVLASDGYIDNALKMFDEMSHRGVE-F----STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM----INGSVIA 229 (556)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~ 229 (556)
.....+...|++++|...|++..+.-.. + ...++..+...|...|+++.|...+++........ +....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 3444556677777777777776653111 1 23455666666777777777777777665431111 1123455
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCChhhHH
Q 008727 230 VLIIHGFCKGKRVEEAFKVLDELRIR----ECKP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKL----GVAPRTNDYR 300 (556)
Q Consensus 230 ~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 300 (556)
+.+...|...|++++|.+.|++..+. +-.+ ...++..+...|...|++++|++.+++..+. +......++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 66777777777777777777765542 1111 1235566666777777777777777766551 1111133455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 008727 301 EFILGLIVERRICEAKELGEVIV 323 (556)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~ 323 (556)
.+...+.+.|++++|...++...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 55556666666666666655544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.5e-10 Score=115.10 Aligned_cols=166 Identities=8% Similarity=-0.060 Sum_probs=146.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
+...|+.+..++.+.|++++|++.|++.++.. +-+...+..+...|.+.|++++|++.|++..+..+. +..+|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 46789999999999999999999999999875 557889999999999999999999999999887544 7889999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCH
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 242 (556)
++.+.|++++|++.|++..+.+. -+...|..+...+...|++++|++.|++..+. .|.+...+..+...+...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999988642 25678888999999999999999999999987 677788899999999999999
Q ss_pred HHHHHHHHHHhh
Q 008727 243 EEAFKVLDELRI 254 (556)
Q Consensus 243 ~~A~~~~~~m~~ 254 (556)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-09 Score=95.37 Aligned_cols=193 Identities=10% Similarity=0.040 Sum_probs=142.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHh
Q 008727 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412 (556)
Q Consensus 333 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 412 (556)
.++.....+..|++++|+..|++..+....++...+..+..++...|++++|.+.++...+..+. +...|..+...|..
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHH
Confidence 34444555678899999999999888776567777777888888999999999999998887655 66788888888999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-------hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc
Q 008727 413 SGRLREAYGVIQEMKRKGLDPDV-------SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN---LKTYNILISKFSE 482 (556)
Q Consensus 413 ~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~ 482 (556)
.|++++|+..+++..+.... +. ..|..+...+...|++++|.+.|+++.+. .|+ ...|..+..+|..
T Consensus 89 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHH
Confidence 99999999999988876432 34 45777888888889999999999998875 444 5677777777765
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 483 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
.| ..+++++...+. .+...|.... ....+.+++|...+++..+.++.
T Consensus 166 ~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 166 NG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence 44 344555554432 2344444333 33456789999999999887754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-10 Score=103.49 Aligned_cols=191 Identities=15% Similarity=0.087 Sum_probs=97.9
Q ss_pred cCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-CCccHhhHHHHHH
Q 008727 343 SIDPRSAIVFFNFMIEK------GRVP-TLSTLSNLSKNLCKRNKSDELVEVYKVLSAN------D-YFTDMESYNVMVS 408 (556)
Q Consensus 343 ~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~ 408 (556)
.|++++|+..+++..+. +..| ...++..+...|...|++++|.+.+++..+. . .+.....+..+..
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 135 (283)
T 3edt_B 56 QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL 135 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46666666666665543 1111 2345555566666666666666666665442 1 0112345555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC------CCCC-CHhHHHHHHHHHhhcCChhhHHHHHHHHHHc-------CCCCC-HHHH
Q 008727 409 FLCTSGRLREAYGVIQEMKRK------GLDP-DVSFYNSLMEACCREDLLRPAKKLWDQMFAS-------GCSGN-LKTY 473 (556)
Q Consensus 409 ~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~ 473 (556)
.|...|++++|...+++..+. +..| ...++..+...|...|++++|.+.++++.+. ...+. ...|
T Consensus 136 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 215 (283)
T 3edt_B 136 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIW 215 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 666666666666666665543 1111 2345556666666666666666666665542 01111 1222
Q ss_pred HHHHHHHHccCCHHHH------HHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhC
Q 008727 474 NILISKFSEVGEIEGA------LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (556)
Q Consensus 474 ~~li~~~~~~g~~~~A------~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 534 (556)
..+...+...+....+ ...++.... .......++..+...|.+.|++++|..++++.++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 216 MHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2222222222221111 111111100 11112446778889999999999999999988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.1e-09 Score=92.74 Aligned_cols=196 Identities=9% Similarity=-0.113 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
.|+..|......+...|++++|...|+...+...+++...+..+...+...|++++|++.|++..+..+. +..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4667888888889999999999999999888763367778878888999999999999999999887544 677899999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCccCh-------hhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCC--chhhHHHH
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEFST-------IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN--GSVIAVLI 232 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l 232 (556)
.++...|++++|.+.|++..+.... +. ..|..+...+...|++++|++.|+...+. .|. ....+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHH
Confidence 9999999999999999998875421 23 34666777788889999999999998866 566 56777777
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 233 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
...|...| ...++++...+ ..+...|..... ...+.+++|+..+++..+.
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 77775443 34455554442 223444444332 3346688999999988875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-08 Score=90.66 Aligned_cols=181 Identities=13% Similarity=0.022 Sum_probs=123.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY-FTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427 (556)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 427 (556)
|+..|+++.+.+ .++..++..+..++...|++++|++++......+. .-+...+..+++.+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665554 44555556777788888888888888888766554 1256677888888888888888888888887
Q ss_pred HCCCCC-----CHhHHHHHHHHH--hhcC--ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 428 RKGLDP-----DVSFYNSLMEAC--CRED--LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 428 ~~~~~p-----~~~~~~~ll~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
+. .| +..+...+..++ ...| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 45 245555555553 3334 788888888888664 45533444455578888889888888886654
Q ss_pred CC---------CCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 499 KG---------VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 499 ~g---------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
.- -+-|..++..+|......|+ +|.++++++.+..+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 20 02255566455555556676 78888888877664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.12 E-value=9.7e-10 Score=100.18 Aligned_cols=135 Identities=6% Similarity=-0.065 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhC------C-CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhC------C
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVN------K-ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN------C 149 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~ 149 (556)
....+..+...+...|++++|...++++.+. + .+....++..+...|...|++++|.+.|++.... .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4566777788888888888888888887654 1 1234567777888888888888888888887653 1
Q ss_pred -CCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhC------CCcc-ChhhHHHHHHHHHhhCcHHHHHHHHHHHHh
Q 008727 150 -EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR------GVEF-STIGFGVFIWKFCENAKLGQVLSMLDEVRK 217 (556)
Q Consensus 150 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 217 (556)
.+....++..+...+...|++++|.+.|++..+. +..| ...++..+...+...|++++|.+.+++...
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1223457777888888888888888888877654 1112 345566677777777777777777777764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.11 E-value=5.6e-09 Score=82.97 Aligned_cols=131 Identities=14% Similarity=0.210 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
.|..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3555666666677777777777776655332 45566666667777777777777777776653 345566667777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCC
Q 008727 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 535 (556)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 7777777777777776553 2245566667777777777777777777776544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.9e-08 Score=79.83 Aligned_cols=130 Identities=16% Similarity=0.193 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
.+..+...+...|++++|..+++.+.+.... +...+..+...+...|++++|...++++...+.. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 3556677788899999999999988776543 6678888888999999999999999998886533 5778888899999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998864 456778888999999999999999999998865
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-08 Score=92.27 Aligned_cols=169 Identities=11% Similarity=0.040 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCc-cHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLSAN----DYFT-DMESYNVMVSFLCTS-GRLREAYGVIQEMKRKGLDP-D---- 434 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p-~---- 434 (556)
.++..+..+|.+.|++++|...+++..+. |-.. ...+++.+...|... |++++|+..+++..+..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 45566666777777777777777766542 1110 134677888888886 99999999999877642110 1
Q ss_pred HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh--
Q 008727 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL------KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT-- 506 (556)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-- 506 (556)
..++..+...+...|++++|...|++..+....... ..|..+..++...|++++|...|++..+. .|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCc
Confidence 356888889999999999999999999875322211 15677788889999999999999998743 33321
Q ss_pred ----hHHHHHHHHH--ccCCHHHHHHHHHHhhhCCC
Q 008727 507 ----TYTSLLEGLC--QETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 507 ----~~~~l~~~~~--~~g~~~~a~~~~~~m~~~~~ 536 (556)
.+..++.+|. ..+++++|+..|+++.+.++
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 2444556664 46779999999988766543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.01 E-value=5.1e-07 Score=88.72 Aligned_cols=377 Identities=8% Similarity=-0.032 Sum_probs=211.0
Q ss_pred cC-ChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC-HhHHH
Q 008727 97 SR-QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY-IDNAL 174 (556)
Q Consensus 97 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~ 174 (556)
.| +++.|+.+|+.+...- |. |+++.+..+|+..... .|+...|...+....+.+. .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 3677777777766542 22 8999999999999875 4688999999988888774 46677
Q ss_pred HHHHHHHhC-CCcc-ChhhHHHHHHHHH----hhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHH
Q 008727 175 KMFDEMSHR-GVEF-STIGFGVFIWKFC----ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKV 248 (556)
Q Consensus 175 ~~~~~m~~~-~~~~-~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 248 (556)
.+|+..... |..| +...|...+..+. ..++.+.+.++|+..... +. ......|..... +.+......+.++
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~-~~~~~lw~~Y~~-fE~~~~~~~~~~~ 145 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PM-GSLSELWKDFEN-FELELNKITGKKI 145 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CC-TTHHHHHHHHHH-HHHHHCHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hh-hhHHHHHHHHHH-HHHHhccccHHHH
Confidence 888876653 4333 5566666665443 346788888999888864 21 111222322211 1111112222222
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--C-----CHHHHHHHHHH
Q 008727 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE--R-----RICEAKELGEV 321 (556)
Q Consensus 249 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~-----~~~~a~~~~~~ 321 (556)
+.+.. +.+..|..+++.+...-...+...|...+.--... + ..+.+..+|+.
T Consensus 146 ~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 146 VGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp HHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence 22211 11222333333222110000112232222221111 0 02345567777
Q ss_pred HHcCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------
Q 008727 322 IVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN------ 394 (556)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------ 394 (556)
++...+ ..+..|-..... ...|+.+.|..++++.... |....+.. .|....+.++. ++.+.+.
T Consensus 205 al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 205 ILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----
T ss_pred HHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhcc
Confidence 666433 335555544444 3357788888888888776 33322211 12222221211 2222110
Q ss_pred ------CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh-cCChhhHHHHHHHHHHcCCC
Q 008727 395 ------DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR-EDLLRPAKKLWDQMFASGCS 467 (556)
Q Consensus 395 ------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~ 467 (556)
........|...+..+.+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+.- +
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~ 351 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-P 351 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-T
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-C
Confidence 00112246777777777788899999999998 32 12234444322222222 336999999999998763 3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
-++..|...++...+.|+.+.|..+|+++. .....|...+.-=...|+.+.+..+++++.+
T Consensus 352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 352 DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345566777887788999999999999972 2466777777766778999999999988763
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-08 Score=86.59 Aligned_cols=158 Identities=11% Similarity=0.042 Sum_probs=103.8
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCccHhhHHH----------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 008727 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNV----------------MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438 (556)
Q Consensus 375 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 438 (556)
+...|++++|...|+...+..+. +...|.. +..+|.+.|++++|+..|++..+.... +...+
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 91 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCL 91 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 44555555555555555443322 2333444 777888888888888888888877543 67788
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 008727 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE--IEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (556)
Q Consensus 439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 516 (556)
..+..++...|++++|...|++..+.. +.+...|..+..+|...|+ .+.+...++... ...|....+.....++.
T Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~ 168 (208)
T 3urz_A 92 EACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS--SPTKMQYARYRDGLSKL 168 (208)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHH
Confidence 888888888888888888888888764 4457778888777766553 344555555543 22233333444555666
Q ss_pred ccCCHHHHHHHHHHhhhCCCc
Q 008727 517 QETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 517 ~~g~~~~a~~~~~~m~~~~~~ 537 (556)
..|++++|+..|++.++..+.
T Consensus 169 ~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 169 FTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHTHHHHHHHHHHHTTTSCC
T ss_pred HccCHHHHHHHHHHHHHhCCC
Confidence 778888888888888877654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-08 Score=90.33 Aligned_cols=102 Identities=12% Similarity=-0.001 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC---HHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC--CChHh
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD---SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCED--IGPEI 156 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 156 (556)
.++..+......+.+.|++++|...|+.+.+.. +.+ ...+..+...|.+.|++++|+..|+...+..+. ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355666667777778888888888888887754 223 567777778888888888888888888765331 12456
Q ss_pred HHHHHHHHHh--------cCCHhHHHHHHHHHHhCC
Q 008727 157 CNSLLAVLAS--------DGYIDNALKMFDEMSHRG 184 (556)
Q Consensus 157 ~~~li~~~~~--------~g~~~~a~~~~~~m~~~~ 184 (556)
+..+..++.. .|++++|...|++..+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 6777777777 788888888888877653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.8e-08 Score=87.35 Aligned_cols=63 Identities=6% Similarity=0.037 Sum_probs=36.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHcc----------CCHHHHHHHHHHhhhCCC
Q 008727 474 NILISKFSEVGEIEGALRLFHNMLEKGVAP--DATTYTSLLEGLCQE----------TNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~ 536 (556)
..+...|.+.|++++|...|+++++..... ....+..+..+|... |++++|...++++++..+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 344566666777777777777766542110 123455555555544 666777777777666554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-07 Score=81.95 Aligned_cols=186 Identities=11% Similarity=-0.019 Sum_probs=148.3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcC----CHHHHHHH
Q 008727 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG----RLREAYGV 422 (556)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~ 422 (556)
.+|+..|++..+.| +...+..+...|...+++++|.+.|++..+.+ +...+..+...|.. + +.++|.++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35667777777764 66777788888888999999999999998875 66778888888877 6 89999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc----cCCHHHHHHHH
Q 008727 423 IQEMKRKGLDPDVSFYNSLMEACCR----EDLLRPAKKLWDQMFASGCS-GNLKTYNILISKFSE----VGEIEGALRLF 493 (556)
Q Consensus 423 ~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~ 493 (556)
|++..+.| +...+..+...|.. .+++++|.+.|++..+.|.. .++..+..|...|.. .+++++|.+.|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998865 67788888888887 88999999999999986521 127788889999988 88999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHcc-C-----CHHHHHHHHHHhhhCCCcccHHHHH
Q 008727 494 HNMLEKGVAPDATTYTSLLEGLCQE-T-----NLQAAFEVFNKSVNHDVMLARSILS 544 (556)
Q Consensus 494 ~~m~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~~~~~~~~~ 544 (556)
++..+.+ .+...+..|...|... | ++++|..+|++..+.|.......+.
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~ 207 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFD 207 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9998872 2445666777777543 3 8999999999999988765554444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-07 Score=82.99 Aligned_cols=218 Identities=12% Similarity=0.040 Sum_probs=117.5
Q ss_pred CHHHHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 008727 48 SPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127 (556)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 127 (556)
+|..+..|-+.+-.|+...++.=.. +-....++ ..-.-+.+++...|++... ..-.|....+..+..
T Consensus 13 ~~~~lf~ikn~fy~G~yq~~i~e~~---~~~~~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~ 79 (310)
T 3mv2_B 13 DPMDYFNIKQNYYTGNFVQCLQEIE---KFSKVTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ 79 (310)
T ss_dssp --CCTHHHHHHHTTTCHHHHTHHHH---TSSCCCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhHHHHHHHHHH---hcCccchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH
Confidence 5555667777777777877776222 21221222 2223345777777776631 111233333333333
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-ccChhhHHHHHHHHHhhCcHH
Q 008727 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV-EFSTIGFGVFIWKFCENAKLG 206 (556)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~ 206 (556)
.+ ..+ |+..|++....+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+
T Consensus 80 ~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d 153 (310)
T 3mv2_B 80 FL-DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVS 153 (310)
T ss_dssp HH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHH
T ss_pred Hh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHH
Confidence 32 222 666676665544 33455556777777777777777777777655543 124455666667777777777
Q ss_pred HHHHHHHHHHhccCCCCC----chhhHHHHHHH----HhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008727 207 QVLSMLDEVRKRENSMIN----GSVIAVLIIHG----FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278 (556)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~----~~~~~~~li~~----~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 278 (556)
.|.+.++.|.+. .++ +..+...|+.+ ....+++.+|..+|+++.+. .|+..+-..++.++.+.|+++
T Consensus 154 ~A~k~l~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~ 228 (310)
T 3mv2_B 154 TASTIFDNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIA 228 (310)
T ss_dssp HHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHH
Confidence 777777777654 221 12222223333 22233677777777776554 344333334444666667777
Q ss_pred HHHHHHHHHHh
Q 008727 279 EREVVLKKKRK 289 (556)
Q Consensus 279 ~a~~~~~~~~~ 289 (556)
+|.+.++.+.+
T Consensus 229 eAe~~L~~l~~ 239 (310)
T 3mv2_B 229 EAQGIVELLLS 239 (310)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHH
Confidence 77666665443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-08 Score=103.54 Aligned_cols=185 Identities=10% Similarity=-0.006 Sum_probs=147.9
Q ss_pred HHhcCChhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHH
Q 008727 340 SVSSIDPRSAIVFFNFMI--------EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411 (556)
Q Consensus 340 ~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 411 (556)
++..+++++|++.+++.. +.. +.+...+..+...+...|++++|.+.|+++.+.++. +...|..+..+|.
T Consensus 401 a~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 401 ATVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL 478 (681)
T ss_dssp HTTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence 366789999999999887 322 335667788888999999999999999999886554 7778999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 008727 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491 (556)
Q Consensus 412 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 491 (556)
..|++++|++.|++..+.... +...|..+..++.+.|++++ .+.|+++.+.+ +.+...|..+..+|.+.|++++|.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999987543 57788899999999999999 99999999865 5567889999999999999999999
Q ss_pred HHHHHHHCCCCCC-HhhHHHHHHHHHccCC--------HHHHHHHHHHh
Q 008727 492 LFHNMLEKGVAPD-ATTYTSLLEGLCQETN--------LQAAFEVFNKS 531 (556)
Q Consensus 492 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~--------~~~a~~~~~~m 531 (556)
.|+++.+. .|+ ...+..+..++...|+ +++|.+.++.+
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 99998854 454 4566667777766444 55666665554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-08 Score=90.88 Aligned_cols=167 Identities=14% Similarity=0.058 Sum_probs=128.2
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHH-H
Q 008727 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG-V 194 (556)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~ 194 (556)
+.+...+..+...+.+.|++++|...|++.....+. +...+..+...+.+.|++++|...|++..... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 455667778888888999999999999998876544 77888999999999999999999999887653 3433222 2
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHh
Q 008727 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK-PDFIAYRIVAEEFKL 273 (556)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~ 273 (556)
....+...++.+.|+..+++.... .|++...+..+...+...|++++|.+.|.++.+.... .+...+..+...+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 222356677788888888888876 6777888888888999999999999999888876322 125678888888888
Q ss_pred cCCHHHHHHHHHHHH
Q 008727 274 MGSVFEREVVLKKKR 288 (556)
Q Consensus 274 ~~~~~~a~~~~~~~~ 288 (556)
.|+.++|...+++..
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 888888888777654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-07 Score=82.24 Aligned_cols=68 Identities=7% Similarity=-0.086 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-C-CHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKIT-L-DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCE 150 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 150 (556)
++..+..+...+.+.|++++|...|+.+.+.... + ....+..+..++.+.|++++|+..|+.+.+..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P 72 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 72 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence 3455556667777788888888888887764311 1 135666777778888888888888888776543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.4e-08 Score=102.88 Aligned_cols=173 Identities=12% Similarity=-0.065 Sum_probs=130.5
Q ss_pred HhcCChhHHHHHHHHhH--------hCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh
Q 008727 95 SLSRQINAIDSVLKQVK--------VNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166 (556)
Q Consensus 95 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 166 (556)
...|++++|.+.+++.. +.. +.+...+..+...+.+.|++++|++.|+++.+..+. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67888888888888887 432 456677888888888888888888888888776444 77788888888888
Q ss_pred cCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHH
Q 008727 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246 (556)
Q Consensus 167 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 246 (556)
.|++++|.+.|++..+.+. -+...+..+...+...|++++ ++.|++..+. .|.+...+..+...+.+.|++++|.
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888877642 245677777888888888888 8888888876 5666778888888888888888888
Q ss_pred HHHHHHhhCCCCCC-HHHHHHHHHHHHhcCC
Q 008727 247 KVLDELRIRECKPD-FIAYRIVAEEFKLMGS 276 (556)
Q Consensus 247 ~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~ 276 (556)
+.|++..+. .|+ ...+..+..++...++
T Consensus 555 ~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 888887765 344 4456566666555444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.5e-08 Score=99.07 Aligned_cols=154 Identities=9% Similarity=-0.057 Sum_probs=103.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHH
Q 008727 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422 (556)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 422 (556)
.|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 356778888888776653 224667777777888888888888888888776544 566788888888888888888888
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHC
Q 008727 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV---GEIEGALRLFHNMLEK 499 (556)
Q Consensus 423 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 499 (556)
+++..+.... +...+..+..+|...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 8888776433 56777888888888888888888888887764 44567777788888888 8888888888888766
Q ss_pred C
Q 008727 500 G 500 (556)
Q Consensus 500 g 500 (556)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=7e-08 Score=88.34 Aligned_cols=177 Identities=10% Similarity=-0.046 Sum_probs=134.7
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCcc-HhhHHHHHHHHHhcCCHHHHH
Q 008727 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN----DYFTD-MESYNVMVSFLCTSGRLREAY 420 (556)
Q Consensus 346 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~ 420 (556)
+++|...|.+. ...|...|++++|...|++..+. +-.++ ..+|+.+..+|...|++++|+
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 66777777665 34577889999999999887652 22222 458899999999999999999
Q ss_pred HHHHHHHHCCCC-CC----HhHHHHHHHHHhhc-CChhhHHHHHHHHHHcC--C-CC-C-HHHHHHHHHHHHccCCHHHH
Q 008727 421 GVIQEMKRKGLD-PD----VSFYNSLMEACCRE-DLLRPAKKLWDQMFASG--C-SG-N-LKTYNILISKFSEVGEIEGA 489 (556)
Q Consensus 421 ~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~--~-~~-~-~~~~~~li~~~~~~g~~~~A 489 (556)
..+++..+.... .+ ..+++.+...|... |++++|+..|++..+.. . .+ . ..++..+...|.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999987753211 01 35788999999996 99999999999988641 0 11 1 45688899999999999999
Q ss_pred HHHHHHHHHCCCCCCHh------hHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 490 LRLFHNMLEKGVAPDAT------TYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 490 ~~~~~~m~~~g~~p~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
+..|++..+........ .|..+..++...|++++|...+++..+.++.
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999864332221 4677778899999999999999999876654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-08 Score=84.89 Aligned_cols=161 Identities=11% Similarity=0.029 Sum_probs=92.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHH-HH
Q 008727 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK-FC 200 (556)
Q Consensus 122 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~ 200 (556)
+..+...+.+.|++++|...|++..+..+. +...+..+..++.+.|++++|...|+...+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344455556666666666666665543222 55566666666666666666666666655432 222222111111 11
Q ss_pred hhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 008727 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP-DFIAYRIVAEEFKLMGSVFE 279 (556)
Q Consensus 201 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~ 279 (556)
..++...|+..++..... .|.+...+..+...+...|++++|.+.|++..+....+ +...+..+...+...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 212223356666666655 55556666677777777777777777777776653322 24466667777777777777
Q ss_pred HHHHHHHHH
Q 008727 280 REVVLKKKR 288 (556)
Q Consensus 280 a~~~~~~~~ 288 (556)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-08 Score=83.73 Aligned_cols=162 Identities=16% Similarity=0.177 Sum_probs=120.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH-Hh
Q 008727 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA-CC 446 (556)
Q Consensus 368 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~ 446 (556)
+......+...|++++|...|+...+..+. +...+..+...+...|++++|+..+++..... |+...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344555678889999999999887765443 66788888899999999999999999877653 344333322212 22
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCCHHHHH
Q 008727 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETNLQAAF 525 (556)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~ 525 (556)
..++...|...+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 3334445788888888763 4457888899999999999999999999998764322 2457888889999999999999
Q ss_pred HHHHHhhh
Q 008727 526 EVFNKSVN 533 (556)
Q Consensus 526 ~~~~~m~~ 533 (556)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.89 E-value=8.1e-08 Score=82.94 Aligned_cols=96 Identities=13% Similarity=0.173 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHH----------------HHHHHHcCCChHHHHHHHHHHHhC
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF----------------IIPSLIQGKNTQKAFSVFNEVKFN 148 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~~ 148 (556)
..+......+...|++++|...|+...+.. |-+...+.. +...|.+.|++++|+..|++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 334444455566677777777777666643 223333433 334444444444444444444333
Q ss_pred CCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008727 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182 (556)
Q Consensus 149 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (556)
.+. +..+|..+..++...|++++|.+.|++..+
T Consensus 84 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 84 APN-NVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 333444444444444444444444444433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.87 E-value=2.7e-07 Score=80.71 Aligned_cols=60 Identities=12% Similarity=0.058 Sum_probs=40.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008727 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDF----IAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292 (556)
Q Consensus 231 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 292 (556)
.+...|.+.|++++|...|+.+.+. .|+. ..+..+..++.+.|+.++|.+.++.+...+.
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 3566677777777777777777665 2322 3566677777777888888777777766543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.1e-08 Score=87.98 Aligned_cols=166 Identities=14% Similarity=0.103 Sum_probs=132.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH-H
Q 008727 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS-L 441 (556)
Q Consensus 363 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l 441 (556)
.+...+..+...+...|++++|...|+...+..+. +...+..+...+...|++++|...++++... .|+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 34555666777788999999999999998887655 6778899999999999999999999988765 345443332 2
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCC
Q 008727 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETN 520 (556)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 520 (556)
...+...++.+.|.+.+++..+.. +.+...+..+...|...|++++|.+.|+++.+..... +...+..++..+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 334667788888999999988874 5668889999999999999999999999998763221 25678889999999999
Q ss_pred HHHHHHHHHHhh
Q 008727 521 LQAAFEVFNKSV 532 (556)
Q Consensus 521 ~~~a~~~~~~m~ 532 (556)
.++|...+++.+
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 999999888754
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.86 E-value=4.6e-06 Score=81.90 Aligned_cols=98 Identities=7% Similarity=-0.026 Sum_probs=67.5
Q ss_pred CHHHHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHhHhC-CC-CCCHHhHHH
Q 008727 48 SPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQ-INAIDSVLKQVKVN-KI-TLDSSVYRF 124 (556)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~ 124 (556)
...++.+.+..+..++.+.+..+|...... .|+...|...+.-..+.++ .+.+..+|+..... |. +.+...|..
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 455666777777667788888888887654 3688888888887777663 45567778877663 32 346677777
Q ss_pred HHHHHHc----CCChHHHHHHHHHHHhC
Q 008727 125 IIPSLIQ----GKNTQKAFSVFNEVKFN 148 (556)
Q Consensus 125 li~~~~~----~~~~~~a~~~~~~~~~~ 148 (556)
.+..+.. .++.+.+.++|+.....
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 7766542 35678888899888774
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-08 Score=82.44 Aligned_cols=139 Identities=8% Similarity=-0.063 Sum_probs=73.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHH
Q 008727 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455 (556)
Q Consensus 376 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 455 (556)
...|++++|+..++......+. +...+..+...|.+.|++++|++.|++..+.... +..+|..+..+|...|++++|.
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHH
Confidence 3445555665555555443221 2334455556666666666666666666655332 4556666666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH-HHHHHHCCCCC-CHhhHHHHHHHHHccC
Q 008727 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL-FHNMLEKGVAP-DATTYTSLLEGLCQET 519 (556)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p-~~~~~~~l~~~~~~~g 519 (556)
..|++..+.. +-+...|..+...|.+.|+.++|.+. +++..+. .| +...|......+...|
T Consensus 86 ~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 86 ECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 6666666542 23455566666666666665554443 3555543 22 3334444434444444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-08 Score=82.03 Aligned_cols=142 Identities=8% Similarity=-0.058 Sum_probs=81.4
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhH
Q 008727 93 SLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDN 172 (556)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 172 (556)
.+...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++..+..+. +..+|..+..+|.+.|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHH
Confidence 3444566666666666655432 223344555666666777777777777766665433 56666667777777777777
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHH-HHHHHhccCCCCCchhhHHHHHHHHhccC
Q 008727 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM-LDEVRKRENSMINGSVIAVLIIHGFCKGK 240 (556)
Q Consensus 173 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 240 (556)
|+..|++..+.+. -+..++..+...+.+.|++++|.+. ++...+. .|.+..+|......+...|
T Consensus 84 A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l---~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL---FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH---STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhC
Confidence 7777766665432 1345555566666666666554443 3555544 4555555555444444444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.2e-07 Score=79.36 Aligned_cols=142 Identities=6% Similarity=-0.018 Sum_probs=77.1
Q ss_pred hHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC----ChHHHHH
Q 008727 65 SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK----NTQKAFS 140 (556)
Q Consensus 65 ~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~ 140 (556)
++|++.|..+... -++..+..+...+...+++++|.+.|+...+.| +...+..|...|.. + +.++|.+
T Consensus 3 ~eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 3455666665443 255666666666666666666666666666654 45555555555555 4 6666666
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCc-cChhhHHHHHHHHHh----hCcHHHHHHH
Q 008727 141 VFNEVKFNCEDIGPEICNSLLAVLAS----DGYIDNALKMFDEMSHRGVE-FSTIGFGVFIWKFCE----NAKLGQVLSM 211 (556)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~ 211 (556)
.|++..+.| ++.++..|...|.. .+++++|.+.|++..+.|.. .+...+..|-..|.. .+++++|.+.
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 666665543 45555666666555 55666666666666554421 013333334444443 3344444444
Q ss_pred HHHHHh
Q 008727 212 LDEVRK 217 (556)
Q Consensus 212 ~~~~~~ 217 (556)
|+....
T Consensus 152 ~~~A~~ 157 (212)
T 3rjv_A 152 FKGSSS 157 (212)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.2e-07 Score=79.50 Aligned_cols=126 Identities=9% Similarity=-0.037 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh
Q 008727 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447 (556)
Q Consensus 368 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 447 (556)
+..+...+...|++++|...|++.. .|+...+..+...|...|++++|+..+++..+.... +...|..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHH
Confidence 3444556667777777777776653 346667777777777777777777777777665422 55667777777777
Q ss_pred cCChhhHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 448 EDLLRPAKKLWDQMFASGCSGNL----------------KTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.|++++|.+.|++..+.. +.+. ..+..+..+|...|++++|.+.|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 777777777777776642 2222 55666677777777777777777777644
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.8e-06 Score=76.20 Aligned_cols=215 Identities=8% Similarity=0.026 Sum_probs=88.2
Q ss_pred HHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC--ChHHHHHHHHHHHhCCCCCChHhHHHHHHHH----Hhc---CCHhH
Q 008727 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK--NTQKAFSVFNEVKFNCEDIGPEICNSLLAVL----ASD---GYIDN 172 (556)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~~ 172 (556)
+|.+.++.++..+ |-+..+|+.--..+...| +++++++.++.+....++ +..+|+.--..+ ... +++++
T Consensus 51 ~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 51 RALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 4444444444433 223333444444444444 444444444444443322 333444333333 222 34444
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHH--HHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC------HHH
Q 008727 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG--QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR------VEE 244 (556)
Q Consensus 173 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------~~~ 244 (556)
++++++.+.+.+. -+-.+|+.-...+...|+++ ++++.++.+.+. .+.+..+|+.-...+.+.+. +++
T Consensus 129 EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 129 EFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 4444444444321 13334444443444444444 444444444443 33334444333333333333 444
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008727 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE-REVVLKKKRKLG--VAPRTNDYREFILGLIVERRICEAKELGEV 321 (556)
Q Consensus 245 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 321 (556)
+++.++.+...... |...|+.+-..+.+.|+... +.++..++...+ -..+...+..+...+.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 55555444443221 44444444444444443222 223333332211 011233344444444455555555555555
Q ss_pred HH
Q 008727 322 IV 323 (556)
Q Consensus 322 ~~ 323 (556)
+.
T Consensus 284 l~ 285 (306)
T 3dra_A 284 LK 285 (306)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.9e-07 Score=84.04 Aligned_cols=61 Identities=10% Similarity=0.012 Sum_probs=37.0
Q ss_pred hCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008727 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281 (556)
Q Consensus 202 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 281 (556)
.|++++|.+++++..+... .. .+...+++++|...|... ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~---~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK---TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC---CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc---cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 5677778888877765411 10 011146777777777654 23456677777777
Q ss_pred HHHHHHHh
Q 008727 282 VVLKKKRK 289 (556)
Q Consensus 282 ~~~~~~~~ 289 (556)
+.|.+..+
T Consensus 57 ~~~~~al~ 64 (307)
T 2ifu_A 57 DAYLQEAE 64 (307)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-07 Score=86.70 Aligned_cols=225 Identities=10% Similarity=-0.018 Sum_probs=146.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHH
Q 008727 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV-ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV 351 (556)
Q Consensus 273 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~ 351 (556)
..|++++|.+++++..+.... .+.+ .++++.|...|..+. ......+++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a~--------------~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKAA--------------VAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHHH--------------HHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHHH--------------HHHHHcCCHHHHHH
Confidence 356778888888877654211 1233 577888877776542 12234678888888
Q ss_pred HHHHHHHcCC----CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCc-cHhhHHHHHHHHHhcCCHHHHHH
Q 008727 352 FFNFMIEKGR----VP-TLSTLSNLSKNLCKRNKSDELVEVYKVLSAN----DYFT-DMESYNVMVSFLCTSGRLREAYG 421 (556)
Q Consensus 352 ~~~~~~~~~~----~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~ 421 (556)
.|.+..+... .+ -..++..+...|.+.|++++|...|++..+. |-.. ...+++.+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8877654321 11 1346777778888889999999988886542 2111 13467777788877 99999999
Q ss_pred HHHHHHHCCCCC-C----HhHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 008727 422 VIQEMKRKGLDP-D----VSFYNSLMEACCREDLLRPAKKLWDQMFAS----GCSGN-LKTYNILISKFSEVGEIEGALR 491 (556)
Q Consensus 422 ~~~~m~~~~~~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~ 491 (556)
.+++..+..... + ..++..+...|...|++++|++.|++..+. +..+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 988876532111 1 456788888888999999999999888763 11111 2356666777778899999999
Q ss_pred HHHHHHHCCCCCCH------hhHHHHHHHHHccCCHHHHHHH
Q 008727 492 LFHNMLEKGVAPDA------TTYTSLLEGLCQETNLQAAFEV 527 (556)
Q Consensus 492 ~~~~m~~~g~~p~~------~~~~~l~~~~~~~g~~~~a~~~ 527 (556)
.|++.. . .|+. .....++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 998887 4 2321 1234445544 56777666663
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.77 E-value=4e-06 Score=76.61 Aligned_cols=163 Identities=11% Similarity=0.076 Sum_probs=123.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CccHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhHHHH
Q 008727 371 LSKNLCKRNKSDELVEVYKVLSANDY-FTDME----SYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-PD----VSFYNS 440 (556)
Q Consensus 371 ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 440 (556)
.+..+...|++++|..+++...+... .|+.. .+..+...+...+++++|+..+++..+.... ++ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45678889999999999999887432 22321 3345666677778999999999999884322 22 236899
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HhhHH
Q 008727 441 LMEACCREDLLRPAKKLWDQMFAS-----GCSGN-LKTYNILISKFSEVGEIEGALRLFHNMLEK----GVAPD-ATTYT 509 (556)
Q Consensus 441 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 509 (556)
+..+|...|++++|...++++.+. +..+. ..+|..+...|.+.|++++|.+.+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999998842 11222 347888999999999999999999988753 22222 56788
Q ss_pred HHHHHHHccCC-HHHHHHHHHHhhh
Q 008727 510 SLLEGLCQETN-LQAAFEVFNKSVN 533 (556)
Q Consensus 510 ~l~~~~~~~g~-~~~a~~~~~~m~~ 533 (556)
.+..+|.+.|+ +++|.+.+++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88899999994 6999999988753
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.8e-06 Score=77.08 Aligned_cols=152 Identities=7% Similarity=0.039 Sum_probs=90.5
Q ss_pred CChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCC------
Q 008727 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR--EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL------ 450 (556)
Q Consensus 379 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------ 450 (556)
++++++.++++.+.+..++ +..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+...+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 5566666666666665544 5556666555556666665 666666766666544 55666655555555554
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHCC--CCCCHhhHHHHHHHHHccCCHHHHHHH
Q 008727 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG-ALRLFHNMLEKG--VAPDATTYTSLLEGLCQETNLQAAFEV 527 (556)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~a~~~ 527 (556)
++++++.+++++... +-|...|+-+-..+.+.|+..+ +..+..++.+.+ -..+...+..+...|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 666666666666654 4556666666666666665333 334444444322 122455566666666667777777777
Q ss_pred HHHhhh
Q 008727 528 FNKSVN 533 (556)
Q Consensus 528 ~~~m~~ 533 (556)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-07 Score=94.21 Aligned_cols=152 Identities=7% Similarity=-0.070 Sum_probs=111.5
Q ss_pred cChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHH
Q 008727 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141 (556)
Q Consensus 62 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 141 (556)
++.+.|+..|+.+.... +.+...|..+...+.+.|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45677888888775443 2357788888888889999999999999988875 55678888888999999999999999
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhh---CcHHHHHHHHHHHHhc
Q 008727 142 FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN---AKLGQVLSMLDEVRKR 218 (556)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 218 (556)
|++..+.... +...+..+..++.+.|++++|.+.|++..+... .+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998876543 678888899999999999999999998887642 2456777788888888 8999999999988877
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-06 Score=74.24 Aligned_cols=126 Identities=10% Similarity=-0.022 Sum_probs=76.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhc
Q 008727 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413 (556)
Q Consensus 334 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 413 (556)
++.....+..|++++|+..|++.. .|+...+..+...+...|++++|...++...+.... +...+..+...|...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHc
Confidence 333344455666677776666552 445666666666666777777777777666654432 455666666666667
Q ss_pred CCHHHHHHHHHHHHHCCCCC---------------CHhHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 008727 414 GRLREAYGVIQEMKRKGLDP---------------DVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 414 ~~~~~a~~~~~~m~~~~~~p---------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (556)
|++++|.+.|++..+..... ....+..+..+|...|++++|.+.|++..+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 77777777776666643221 1145666666666677777777777666654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-06 Score=71.71 Aligned_cols=127 Identities=10% Similarity=0.069 Sum_probs=84.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
.+..+...+...|++++|...+++..+.... +..++..+..++...|++++|.+.+++..+.. +.+...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 4566666667777777777777777665332 56667777777777777777777777777653 445667777777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHH--HHHHHccCCHHHHHHHHHHh
Q 008727 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSL--LEGLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--~~~~~~~g~~~~a~~~~~~m 531 (556)
..|++++|.+.|+++.+.... +...+..+ ...+.+.|++++|.+.+++.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 778888888777777765221 33344323 33356677777777777764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=4.1e-05 Score=70.22 Aligned_cols=225 Identities=9% Similarity=-0.012 Sum_probs=150.5
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC-ChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc-C-CH
Q 008727 94 LSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK-NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD-G-YI 170 (556)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~ 170 (556)
..+.+..++|.++++.++..+ +-+..+|+.--..+...| .++++++.++.+....++ +..+|+.-..++.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 334455567888888888876 456667777667777777 589999999999887655 778888888777776 6 78
Q ss_pred hHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHH--------HHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC-
Q 008727 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG--------QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR- 241 (556)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~- 241 (556)
++++++++.+.+.+. -+..+|+.-...+.+.|.++ ++++.++.+.+. .+.+..+|+.....+.+.++
T Consensus 142 ~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp HHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcccc
Confidence 889999999887653 36667776666666666666 888888888876 67777888777777777665
Q ss_pred ------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC----
Q 008727 242 ------VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV--------------------FEREVVLKKKRKLG---- 291 (556)
Q Consensus 242 ------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~~~~~~---- 291 (556)
++++++.+++....... |...|+.+-..+.+.|+. .+..+...++...+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred ccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 67888888887765332 667777666666555543 12222222222111
Q ss_pred -CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 008727 292 -VAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325 (556)
Q Consensus 292 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 325 (556)
-.+.......+...|...|+.++|.++++.+.+.
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0234445556666677777777777777766543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-06 Score=68.08 Aligned_cols=96 Identities=10% Similarity=0.072 Sum_probs=46.9
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 517 (556)
+......|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.+++.++... .+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH
Confidence 4444444555555555555555554432 33444455555555555555555555555544321 134444445555555
Q ss_pred cCCHHHHHHHHHHhhhCC
Q 008727 518 ETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 518 ~g~~~~a~~~~~~m~~~~ 535 (556)
.|++++|++.|++.++.+
T Consensus 94 ~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVD 111 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHC
Confidence 555555555555555444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-06 Score=70.28 Aligned_cols=130 Identities=9% Similarity=-0.013 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 445 (556)
..+..+...+...|+++.|...|+...+.... +...+..+...+...|++++|...+++..+.... +...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 34556667788899999999999988876543 6778888999999999999999999998887433 677888899999
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHHHHHH--HHHHHHccCCHHHHHHHHHHHHH
Q 008727 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNI--LISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 446 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
...|++++|.+.++++.+.. +.+...+.. +...+...|++++|.+.+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999998864 334555533 44447788999999999887653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.3e-07 Score=76.81 Aligned_cols=156 Identities=13% Similarity=0.023 Sum_probs=90.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHhhcCCh
Q 008727 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK----GLDP-DVSFYNSLMEACCREDLL 451 (556)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~ 451 (556)
..|++++|.++++.+.. ........+..+...+...|++++|...+++..+. +..| ...++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664444433 22224456666666777777777777777665541 1111 234566666777777777
Q ss_pred hhHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHccCC
Q 008727 452 RPAKKLWDQMFAS----GCSG--NLKTYNILISKFSEVGEIEGALRLFHNMLEK----GVAP-DATTYTSLLEGLCQETN 520 (556)
Q Consensus 452 ~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~ 520 (556)
++|.+.+++..+. +-.+ ....+..+...+...|++++|.+.+++..+. +... -..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777766543 1011 1344666677777777777777777776542 1100 12234566667777788
Q ss_pred HHHHHHHHHHhhh
Q 008727 521 LQAAFEVFNKSVN 533 (556)
Q Consensus 521 ~~~a~~~~~~m~~ 533 (556)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888777776644
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-06 Score=69.80 Aligned_cols=99 Identities=13% Similarity=0.023 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 008727 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515 (556)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 515 (556)
..+..+...+.+.|++++|...|+++.+.. +.+...|..+..+|...|++++|++.|++..+.... +...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 345555556666666666666666666543 334556666666666666666666666666654221 345555566666
Q ss_pred HccCCHHHHHHHHHHhhhCCC
Q 008727 516 CQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 516 ~~~g~~~~a~~~~~~m~~~~~ 536 (556)
.+.|++++|...|++.++..+
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCC
T ss_pred HHcCCHHHHHHHHHHHHHhCC
Confidence 666666666666666655543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.7e-06 Score=75.61 Aligned_cols=166 Identities=11% Similarity=0.099 Sum_probs=121.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcc-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CC--Hh
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD-----MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD---PD--VS 436 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---p~--~~ 436 (556)
.+...+..+...|++++|.+.++...+...... ...+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456677888999999998887776533211 123444556677888999999999988764221 12 45
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCC-CH
Q 008727 437 FYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGN-----LKTYNILISKFSEVGEIEGALRLFHNMLEKG----VAP-DA 505 (556)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~ 505 (556)
+|+.+...|...|++++|...++++.+. ...|+ ..+|..+..+|...|++++|.+.+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7889999999999999999999998732 01122 2578889999999999999999999987531 111 15
Q ss_pred hhHHHHHHHHHccCCHHHH-HHHHHHhh
Q 008727 506 TTYTSLLEGLCQETNLQAA-FEVFNKSV 532 (556)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 532 (556)
.+|..+...|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6778888899999999999 77788764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.6e-06 Score=66.08 Aligned_cols=95 Identities=14% Similarity=0.199 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
.+..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...++++.+.. +.+..++..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 444444455555555555555555444321 133444444455555555555555555544432 233444444455555
Q ss_pred ccCCHHHHHHHHHHHHH
Q 008727 482 EVGEIEGALRLFHNMLE 498 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~ 498 (556)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.9e-06 Score=69.47 Aligned_cols=104 Identities=14% Similarity=0.104 Sum_probs=79.0
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (556)
+...+..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|...|+++.+.. +.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 3446677777788888888888888888876443 67778888888888888888888888888764 445677888888
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHh
Q 008727 479 KFSEVGEIEGALRLFHNMLEKGVAPDAT 506 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 506 (556)
+|...|++++|.+.|++..+. .|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 888888888888888888765 35543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.4e-06 Score=66.60 Aligned_cols=96 Identities=14% Similarity=0.073 Sum_probs=72.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
.+......|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|++.+++.++.+ +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 5666677777788888888888877776433 56777777788888888888888888877764 455677777888888
Q ss_pred ccCCHHHHHHHHHHHHHC
Q 008727 482 EVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~ 499 (556)
..|++++|.+.|++.++.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 888888888888887765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.55 E-value=9.8e-07 Score=73.81 Aligned_cols=120 Identities=8% Similarity=0.148 Sum_probs=84.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH-HhhcCCh--hh
Q 008727 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA-CCREDLL--RP 453 (556)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~--~~ 453 (556)
..|++++|...++...+..+. +...|..+...|...|++++|...|++..+.... +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 456777777777776665433 5667777778888888888888888877765432 56666677777 6677777 88
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
|...++++.+.. +.+...+..+...|...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888887763 345667777778888888888888888888765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=6.4e-07 Score=72.30 Aligned_cols=99 Identities=14% Similarity=-0.009 Sum_probs=73.3
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (556)
+...+..+...+...|++++|+..|++....... +...|..+..+|...|++++|...|+++.+.. +.+...|..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 4446666777777888888888888877776433 66677777778888888888888888877754 445667777778
Q ss_pred HHHccCCHHHHHHHHHHHHHC
Q 008727 479 KFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+|...|++++|.+.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888877754
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.53 E-value=6e-06 Score=73.14 Aligned_cols=189 Identities=10% Similarity=-0.058 Sum_probs=113.9
Q ss_pred cCCChHHHHHHHHHHHhCCCCCChHhHHHH-------HHHHHhcCCHhHHHHHHHHHHhCCCccCh--------------
Q 008727 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSL-------LAVLASDGYIDNALKMFDEMSHRGVEFST-------------- 189 (556)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------------- 189 (556)
..++...|.+.|.++....+. ....|+.+ ..++.+.++..++...+..-.+. .|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 467888888888888776544 66677777 56666666666666655554441 1111
Q ss_pred --------hhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC-
Q 008727 190 --------IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD- 260 (556)
Q Consensus 190 --------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~- 260 (556)
.........+...|++++|.++|+.+... .|.+. ....+...+.+.+++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 12223445566777777777777766644 33333 44455567777777888777776554321 111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 008727 261 -FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR--TNDYREFILGLIVERRICEAKELGEVIVSGKF 327 (556)
Q Consensus 261 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 327 (556)
...+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|...|+++....+
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 23455666677777777777777777664332243 12333444566677777777777777766544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-05 Score=72.93 Aligned_cols=91 Identities=10% Similarity=0.159 Sum_probs=48.8
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCC-CCCH----HhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-CC----hHhHHHH
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKI-TLDS----SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCED-IG----PEICNSL 160 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 160 (556)
+..+...|++++|..++++..+... .++. ..+..+...+...|++++|+..|++....... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4555666667777666666655321 1111 12223444455556666666666666553211 11 2246666
Q ss_pred HHHHHhcCCHhHHHHHHHHHH
Q 008727 161 LAVLASDGYIDNALKMFDEMS 181 (556)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~ 181 (556)
..+|...|++++|...|++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 666666666666666666655
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.51 E-value=4.9e-06 Score=64.43 Aligned_cols=115 Identities=16% Similarity=0.129 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 444 (556)
...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|..+++++.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 456667777888899999999999988775433 667888888899999999999999999887643 367788888899
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 008727 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 482 (556)
+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 999999999999999988764 3445556555555543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-06 Score=78.52 Aligned_cols=194 Identities=9% Similarity=-0.046 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
+...+..+...+.+.|++++|...|+...+.. +.+...+..+...|.+.|++++|+..+++..+..+. +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 55677788888889999999999999988865 457888888999999999999999999998876543 6788899999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCH
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 242 (556)
++...|++++|...|+...+.+.. +...+...+....+.. ++......... ..+.+..+...+.. + ..|+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~i~~~l~~-l-~~~~~ 151 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIA---KKKRWNSIEER---RIHQESELHSYLTR-L-IAAER 151 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHH---HHHHHHHHHHT---CCCCCCHHHHHHHH-H-HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHH---HHHHHHHHHHH---HHhhhHHHHHHHHH-H-HHHHH
Confidence 999999999999999887764311 1111112222222111 11111111111 13333444433322 2 25778
Q ss_pred HHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHhc-CCHHHHHHHHHHHHh
Q 008727 243 EEAFKVLDELRIRECKPDFIAY-RIVAEEFKLM-GSVFEREVVLKKKRK 289 (556)
Q Consensus 243 ~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~-~~~~~a~~~~~~~~~ 289 (556)
++|.+.++...+. .|+.... ..+-..+.+. +.++++.++|.+..+
T Consensus 152 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888776654 4544333 2333333333 556777777776654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.1e-06 Score=66.55 Aligned_cols=97 Identities=11% Similarity=0.100 Sum_probs=49.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008727 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (556)
Q Consensus 400 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (556)
...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 334455555555555555555555555544221 34455555555555555555555555555432 2334455555555
Q ss_pred HHccCCHHHHHHHHHHHHH
Q 008727 480 FSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~ 498 (556)
|...|++++|.+.|++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=8e-07 Score=71.72 Aligned_cols=101 Identities=11% Similarity=-0.009 Sum_probs=87.8
Q ss_pred CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 008727 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (556)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 513 (556)
+...+..+...+...|++++|...|+++.+.. +.+...|..+..+|...|++++|.+.|++..+... .+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 45567778889999999999999999999875 56788899999999999999999999999987642 25677888999
Q ss_pred HHHccCCHHHHHHHHHHhhhCCC
Q 008727 514 GLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 514 ~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
+|...|++++|...|++.++.++
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999987654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=3.6e-06 Score=65.90 Aligned_cols=118 Identities=10% Similarity=0.024 Sum_probs=65.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008727 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (556)
Q Consensus 400 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (556)
...+..+...+...|++++|...+++....... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 334555555566666666666666665554321 44555556666666666666666666665542 3345555566666
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 008727 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (556)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 520 (556)
|...|++++|.+.|++..+... .+...+..+...+.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 6666666666666666654421 134444445555544443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-06 Score=73.27 Aligned_cols=120 Identities=8% Similarity=-0.069 Sum_probs=56.2
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHh----CCCC-CChHhHHHHHHHHHhcCCH
Q 008727 96 LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF----NCED-IGPEICNSLLAVLASDGYI 170 (556)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~ 170 (556)
..|++++|.++++.+.. .......++..+...+...|++++|...+++... .+.. ....+++.+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 44556666653333322 1112344555555566666666666666655543 1111 1223555556666666666
Q ss_pred hHHHHHHHHHHhC----CCcc--ChhhHHHHHHHHHhhCcHHHHHHHHHHHH
Q 008727 171 DNALKMFDEMSHR----GVEF--STIGFGVFIWKFCENAKLGQVLSMLDEVR 216 (556)
Q Consensus 171 ~~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 216 (556)
++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666666554432 1011 12234444444555555555555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.9e-06 Score=65.98 Aligned_cols=119 Identities=8% Similarity=-0.046 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008727 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442 (556)
Q Consensus 363 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 442 (556)
.+...+..+...+...|++++|...++...+.... +...+..+...+...|++++|...+++..+.... +...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 34566777778888999999999999998876544 6778888888899999999999999998886433 677888888
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 008727 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (556)
Q Consensus 443 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 484 (556)
.++...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 99999999999999999988753 334566666666666554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.46 E-value=3.6e-06 Score=78.53 Aligned_cols=87 Identities=15% Similarity=-0.009 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 008727 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515 (556)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 515 (556)
.+|..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|...|+++++... -+...+..+...+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 344444445555555555555555554432 23344444455555555555555555555444311 1233444444444
Q ss_pred HccCCHHHH
Q 008727 516 CQETNLQAA 524 (556)
Q Consensus 516 ~~~g~~~~a 524 (556)
.+.|+.++|
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444544444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-06 Score=72.87 Aligned_cols=125 Identities=12% Similarity=0.120 Sum_probs=102.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCH--H
Q 008727 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK-FSEVGEI--E 487 (556)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~ 487 (556)
...|++++|...+++..+.... +...|..+...|...|++++|...|+++.+.. +.+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4568899999999998876543 67889999999999999999999999999864 4567788888888 8899998 9
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcc
Q 008727 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538 (556)
Q Consensus 488 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 538 (556)
+|...++++.+... -+...+..+...|...|++++|...++++.+.++..
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 99999999987632 256778888899999999999999999998877643
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=4.5e-06 Score=65.30 Aligned_cols=119 Identities=10% Similarity=-0.048 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 444 (556)
...+..+...+...|+++.|...++...+.... +...+..+...+...|++++|...+++..+.... +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 445566667788888899998888888775443 6677888888888899999999999888876432 56778888888
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 008727 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 486 (556)
+...|++++|.+.+++..+.. +.+...+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 889999999999999888764 44667777777777776653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.7e-06 Score=75.30 Aligned_cols=132 Identities=7% Similarity=-0.132 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 008727 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN--LKTYNILISKF 480 (556)
Q Consensus 403 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~ 480 (556)
+-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 3456677888899999999998887654 444455666667888999999999998655421 111 23677788889
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 481 SEVGEIEGALRLFHNMLEKGVAPD--ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...++.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999999875433253 234556677788999999999999999887765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-05 Score=73.07 Aligned_cols=166 Identities=10% Similarity=0.003 Sum_probs=86.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh-----HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCc---cC--hhhH
Q 008727 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP-----EICNSLLAVLASDGYIDNALKMFDEMSHRGVE---FS--TIGF 192 (556)
Q Consensus 123 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~--~~~~ 192 (556)
...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|.+.|++..+.... +. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 33445555566666666666555443221110 12333444455556666666666665442111 11 2345
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHhccCCCCC----chhhHHHHHHHHhccCCHHHHHHHHHHHhhC----CCCC-CHHH
Q 008727 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMIN----GSVIAVLIIHGFCKGKRVEEAFKVLDELRIR----ECKP-DFIA 263 (556)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~ 263 (556)
+.+...|...|++++|...|++........+. ...++..+...|.+.|++++|.+.+++..+. +... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 55555666666666666666655521000111 1135566677777777777777777665432 1111 1456
Q ss_pred HHHHHHHHHhcCCHHHH-HHHHHHHH
Q 008727 264 YRIVAEEFKLMGSVFER-EVVLKKKR 288 (556)
Q Consensus 264 ~~~ll~~~~~~~~~~~a-~~~~~~~~ 288 (556)
|..+...+.+.|+.++| ...+++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 66667777777777777 55555543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.1e-06 Score=65.35 Aligned_cols=96 Identities=11% Similarity=0.102 Sum_probs=47.0
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 517 (556)
|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.+++..+... -+...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 4444444455555555555555554432 23344455555555555555555555555554321 134444445555555
Q ss_pred cCCHHHHHHHHHHhhhCC
Q 008727 518 ETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 518 ~g~~~~a~~~~~~m~~~~ 535 (556)
.|++++|.+.+++..+.+
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 555555555555554443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00015 Score=66.50 Aligned_cols=183 Identities=11% Similarity=-0.005 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHH------
Q 008727 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR-N-KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR------ 417 (556)
Q Consensus 346 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~------ 417 (556)
+++++++++.+.....+ +..+++.-...+.+. + ++++++++++.+.+..++ +...|+.-.-.+.+.|..+
T Consensus 105 l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhh
Confidence 55555555555554322 344444444444444 4 666777777777766554 5566655555544444444
Q ss_pred --HHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCC-------hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH--
Q 008727 418 --EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL-------LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI-- 486 (556)
Q Consensus 418 --~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-- 486 (556)
++++.++++.+..+. |...|+.....+.+.++ ++++++.++++.... +-|...|+-+-..+.+.|+.
T Consensus 183 ~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 183 WGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcc
Confidence 777777777776554 67777777777766665 567777777777654 45666777666666665543
Q ss_pred ------------------HHHHHHHHHHHHCC-----CCCCHhhHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 487 ------------------EGALRLFHNMLEKG-----VAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 487 ------------------~~A~~~~~~m~~~g-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
.+..+...++...+ -.++...+..++..|...|+.++|.++++.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 22223322232221 02456667777788888888888888888775
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.41 E-value=7.4e-06 Score=76.37 Aligned_cols=132 Identities=11% Similarity=0.022 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcc--------------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD--------------MESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 430 (556)
...+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34566667778888888888888888877554321 4788999999999999999999999999875
Q ss_pred CCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH-HHHHHHHHH
Q 008727 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA-LRLFHNMLE 498 (556)
Q Consensus 431 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 498 (556)
.. +...|..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.|+.++| ...++.|.+
T Consensus 227 p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 67889999999999999999999999999864 45677888999999999999988 456777654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.36 E-value=7.5e-06 Score=67.34 Aligned_cols=99 Identities=8% Similarity=0.012 Sum_probs=83.8
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (556)
+...+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|+..+++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 5567888888889999999999999998887543 67788888899999999999999999998864 456788888899
Q ss_pred HHHccCCHHHHHHHHHHHHHC
Q 008727 479 KFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+|...|++++|.+.|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999998865
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.35 E-value=3.3e-06 Score=67.56 Aligned_cols=97 Identities=12% Similarity=0.042 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008727 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480 (556)
Q Consensus 401 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 480 (556)
..+..+...+.+.|++++|...|++....... +...|..+..+|...|++++|...|++..+.. +.+...|..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 34555566666777777777777777665432 55666667777777777777777777777654 44556666677777
Q ss_pred HccCCHHHHHHHHHHHHHC
Q 008727 481 SEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~ 499 (556)
...|++++|.+.|++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777776654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=8.3e-07 Score=75.84 Aligned_cols=134 Identities=10% Similarity=-0.044 Sum_probs=87.5
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HhHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 008727 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD---------------VSFYNSLMEACCREDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 400 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (556)
...+..+...+...|++++|+..|++..+....-. ...|..+..+|...|++++|...+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 33566666677777888888888877776432211 267777888888888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHH-HHHHHhhhCC
Q 008727 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF-EVFNKSVNHD 535 (556)
Q Consensus 465 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~~ 535 (556)
. +.+...|..+..+|...|++++|.+.|++..+... -+...+..+...+...|+.+++. ..+..+...+
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4 45677788888888888888888888888876532 24556666666777767666666 5555554443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.34 E-value=6.5e-06 Score=74.57 Aligned_cols=99 Identities=8% Similarity=-0.107 Sum_probs=80.2
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHH
Q 008727 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197 (556)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 197 (556)
+...+..+...+.+.|++++|+..|++.....+. +...|..+..++.+.|++++|.+.+++..+.+. -+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 5567777888888999999999999988876433 778888889999999999999999998887642 34567777788
Q ss_pred HHHhhCcHHHHHHHHHHHHhc
Q 008727 198 KFCENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 198 ~~~~~g~~~~a~~~~~~~~~~ 218 (556)
++...|++++|+..|+.....
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888889999999888887765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=2.7e-05 Score=59.43 Aligned_cols=94 Identities=13% Similarity=0.054 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
.+..+...+...|++++|...+++....... +...+..+...+...|++++|...+++..+.. +.+...+..+..+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444444444455555555555544443211 33444444444444455555555544444432 223444444444444
Q ss_pred ccCCHHHHHHHHHHHH
Q 008727 482 EVGEIEGALRLFHNML 497 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~ 497 (556)
..|++++|.+.+++..
T Consensus 84 ~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 4444444444444444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00028 Score=64.36 Aligned_cols=185 Identities=10% Similarity=0.065 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCC-HHHHHHH
Q 008727 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN--KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR-LREAYGV 422 (556)
Q Consensus 346 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~ 422 (556)
+++++.+++.+.....+ +..+++.-...+.+.| .++++..+++.+.+..+. |...|+.-...+...|. .+++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 45677777777765432 5566665555566666 478888888888887665 77788777777777787 5888999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhhc--------------CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----
Q 008727 423 IQEMKRKGLDPDVSFYNSLMEACCRE--------------DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV----- 483 (556)
Q Consensus 423 ~~~m~~~~~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 483 (556)
++.+.+..+. |...|+.....+... +.++++++.++...... +-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 9988887665 777787776666554 34678888888888764 56777787666666555
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHH-----HHHccCCHHHHHHHHHHhhhCCCc
Q 008727 484 ------GEIEGALRLFHNMLEKGVAPDATTYTSLLE-----GLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 484 ------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
+.++++++.++++.+. .||. .|..+.. +....|..+++..++.++++.++.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred cchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 4578899999999865 4553 3432222 222467888999999999988864
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.7e-05 Score=61.78 Aligned_cols=98 Identities=15% Similarity=0.075 Sum_probs=71.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008727 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (556)
Q Consensus 400 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (556)
...+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|...+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345666667777778888888888777766433 56777777777888888888888888877754 4456677777788
Q ss_pred HHccCCHHHHHHHHHHHHHC
Q 008727 480 FSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~ 499 (556)
|...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888877754
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.33 E-value=7e-06 Score=62.15 Aligned_cols=101 Identities=7% Similarity=-0.040 Sum_probs=67.0
Q ss_pred HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHhhHHHHH
Q 008727 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP--DATTYTSLL 512 (556)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~ 512 (556)
...+..+...+...|++++|...+++..+.. +.+...|..+..++...|++++|.+.+++..+.. .. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3455556666667777777777777766653 3455666677777777777777777777777552 11 355666677
Q ss_pred HHHHcc-CCHHHHHHHHHHhhhCCCc
Q 008727 513 EGLCQE-TNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 513 ~~~~~~-g~~~~a~~~~~~m~~~~~~ 537 (556)
..+.+. |++++|.+.+++..+.++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 777777 7777777777777666554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=9.2e-06 Score=63.41 Aligned_cols=95 Identities=17% Similarity=0.262 Sum_probs=44.6
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCC----HhhHHHH
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG--VAPD----ATTYTSL 511 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~l 511 (556)
+..+...+.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|++.+++.++.. ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444444555555555555555554432 2234444555555555555555555555544321 0001 1234444
Q ss_pred HHHHHccCCHHHHHHHHHHhhh
Q 008727 512 LEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 512 ~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
..++...|++++|++.|++.++
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555555555555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.6e-05 Score=60.75 Aligned_cols=102 Identities=10% Similarity=0.072 Sum_probs=88.9
Q ss_pred CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 008727 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (556)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 513 (556)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 45677888889999999999999999999864 45788899999999999999999999999987632 25778888999
Q ss_pred HHHccCCHHHHHHHHHHhhhCCCc
Q 008727 514 GLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 514 ~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
++...|++++|.+.+++..+.++.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC
Confidence 999999999999999999887764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.30 E-value=1e-05 Score=63.11 Aligned_cols=105 Identities=12% Similarity=0.159 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcC--CCCC----HHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG--CSGN----LKTYNI 475 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~ 475 (556)
.+..+...+.+.|++++|++.|++..+.... +...|..+..+|...|++++|++.+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4556666777777777777777777765433 46667777777777777777777777776531 1111 235666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 008727 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509 (556)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 509 (556)
+..++...|++++|++.|++.++. .||..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 777777788888888888877654 45554443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.28 E-value=7.3e-06 Score=65.51 Aligned_cols=100 Identities=13% Similarity=0.000 Sum_probs=86.3
Q ss_pred HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 008727 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (556)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 514 (556)
...+..+...+...|++++|...|+++.+.. +.+...|..+..+|...|++++|...|++..+... -+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHH
Confidence 3456677788899999999999999999875 55788899999999999999999999999997643 256678888999
Q ss_pred HHccCCHHHHHHHHHHhhhCCC
Q 008727 515 LCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 515 ~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
|...|++++|...|++.++.++
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999887654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.4e-05 Score=61.88 Aligned_cols=99 Identities=9% Similarity=-0.018 Sum_probs=62.4
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (556)
+...+..+...+...|++++|...|++....... +...|..+..++...|++++|...+++..+.. +.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 4556666666666667777777776666665332 45566666666666666666666666666653 334556666666
Q ss_pred HHHccCCHHHHHHHHHHHHHC
Q 008727 479 KFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+|...|++++|...|++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 666666666666666666543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.5e-05 Score=60.86 Aligned_cols=97 Identities=9% Similarity=-0.045 Sum_probs=48.1
Q ss_pred HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 008727 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (556)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 514 (556)
...|..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...+++..+... .+...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHHH
Confidence 4444555555555555555555555555432 23344455555555555555555555555544321 134444445555
Q ss_pred HHccCCHHHHHHHHHHhhh
Q 008727 515 LCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 515 ~~~~g~~~~a~~~~~~m~~ 533 (556)
|...|++++|...+++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.4e-05 Score=64.21 Aligned_cols=99 Identities=10% Similarity=0.006 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 008727 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443 (556)
Q Consensus 364 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 443 (556)
+...+..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..+++..+.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4556777778888889999999999888876544 6778888888888899999999999888887543 5778888888
Q ss_pred HHhhcCChhhHHHHHHHHHHc
Q 008727 444 ACCREDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~ 464 (556)
+|...|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888899999999998888875
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.3e-05 Score=66.76 Aligned_cols=131 Identities=15% Similarity=0.088 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcc---------------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD---------------MESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 431 (556)
.+..+...+...|++++|...|++..+....-. ...|..+..+|...|++++|+..+++..+...
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344555667788888888888888776433211 26788888899999999999999999888743
Q ss_pred CCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHHC
Q 008727 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL-RLFHNMLEK 499 (556)
Q Consensus 432 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~ 499 (556)
. +...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++...++.+++. ..+..|...
T Consensus 120 ~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 120 N-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred c-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3 67788889999999999999999999998864 446677888888887777777666 555555544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00084 Score=61.26 Aligned_cols=183 Identities=10% Similarity=-0.058 Sum_probs=103.5
Q ss_pred hHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC-
Q 008727 65 SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQ----------INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK- 133 (556)
Q Consensus 65 ~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~- 133 (556)
+.|+.++..+....+ -+...|+.--.++...+. ++++..+++.+.... +-+..+|+.-.-.+.+.+
T Consensus 47 ~eaL~~t~~~L~~nP--~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 47 ESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp HHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCc
Confidence 457777776654331 233344443333322222 456666676666654 445566665555555555
Q ss_pred -ChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC-HhHHHHHHHHHHhCCCccChhhHHHHHHHHHhh---------
Q 008727 134 -NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY-IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN--------- 202 (556)
Q Consensus 134 -~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------- 202 (556)
.+++++..++.+.+..+. +..+|+.-.-++...|. ++++++.++.+.+.++ -|...|+.....+...
T Consensus 124 ~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 124 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC-----
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccc
Confidence 367777777777766544 66677776666666666 4677777777776543 2555555554444433
Q ss_pred -----CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhcc-----------CCHHHHHHHHHHHhhC
Q 008727 203 -----AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG-----------KRVEEAFKVLDELRIR 255 (556)
Q Consensus 203 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------~~~~~A~~~~~~m~~~ 255 (556)
+.++++++.+...... .|.+..+|+-+-..+.+. +.++++++.++++.+.
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 3466666666666655 566666665444333333 2345555555555543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-05 Score=62.39 Aligned_cols=91 Identities=12% Similarity=-0.014 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 008727 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (556)
Q Consensus 405 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 484 (556)
.+...+.+.|++++|+..|++..+.... +...|..+..++...|++++|+..|++..+.. +.+...+..+..+|...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3334444445555555555544443221 34444444444445555555555555444432 223344444444444444
Q ss_pred CHHHHHHHHHHHH
Q 008727 485 EIEGALRLFHNML 497 (556)
Q Consensus 485 ~~~~A~~~~~~m~ 497 (556)
++++|...+++.+
T Consensus 100 ~~~~A~~~~~~al 112 (121)
T 1hxi_A 100 NANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4445544444444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-05 Score=62.18 Aligned_cols=97 Identities=8% Similarity=0.140 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCC--CCC----HHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC--SGN----LKTYNI 475 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 475 (556)
.+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...++++.+... .++ ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 444555555555666666666655555432 1444555555555555666666665555554310 111 445555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC
Q 008727 476 LISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+..+|...|++++|.+.|+++.+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555566666666666666665543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-05 Score=60.23 Aligned_cols=98 Identities=9% Similarity=0.050 Sum_probs=60.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC--CHHHHHHHH
Q 008727 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG--NLKTYNILI 477 (556)
Q Consensus 400 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li 477 (556)
...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 334555556666666666666666666655322 45556666666666666777766666666542 22 456666666
Q ss_pred HHHHcc-CCHHHHHHHHHHHHHC
Q 008727 478 SKFSEV-GEIEGALRLFHNMLEK 499 (556)
Q Consensus 478 ~~~~~~-g~~~~A~~~~~~m~~~ 499 (556)
.++... |++++|.+.+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 7777777777666654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=7.7e-05 Score=59.65 Aligned_cols=96 Identities=10% Similarity=0.090 Sum_probs=48.4
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHH
Q 008727 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD----VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475 (556)
Q Consensus 400 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 475 (556)
...+..+...+...|++++|...|++..+. .|+ ...|..+..+|...|++++|.+.+++..+.. +.+...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 334444455555555555555555555543 233 3444455555555555555555555555432 223444555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 008727 476 LISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
+..+|...|++++|.+.|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=2.8e-05 Score=59.95 Aligned_cols=97 Identities=11% Similarity=-0.038 Sum_probs=63.8
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 517 (556)
+..+...+.+.|++++|...+++..+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..++.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4445566667777777777777777653 345666777777777777777777777777655322 45566666677777
Q ss_pred cCCHHHHHHHHHHhhhCCC
Q 008727 518 ETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 518 ~g~~~~a~~~~~~m~~~~~ 536 (556)
.|++++|+..+++.++.++
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 7777777777777766554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.13 E-value=3.4e-05 Score=60.18 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=89.7
Q ss_pred HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCC----HhhH
Q 008727 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV--APD----ATTY 508 (556)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~ 508 (556)
...|..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...++++.+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567788889999999999999999999874 55788899999999999999999999999987531 122 6678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHH
Q 008727 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546 (556)
Q Consensus 509 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 546 (556)
..+...+.+.|++++|.+.++++.+.++ +......+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l 118 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR--TPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC--CHHHHHHH
Confidence 8888999999999999999999988764 34444433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00011 Score=58.84 Aligned_cols=99 Identities=10% Similarity=-0.081 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC----HHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD----SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC 157 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 157 (556)
.+...+..+...+...|++++|.+.|++..+.. |+ ...+..+...|...|++++|+..++........ +...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 355666666666677777777777777766653 33 455566666666666666666666666554322 45556
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008727 158 NSLLAVLASDGYIDNALKMFDEMSHR 183 (556)
Q Consensus 158 ~~li~~~~~~g~~~~a~~~~~~m~~~ 183 (556)
..+..++...|++++|.+.|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 66666666666666666666665553
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-05 Score=65.58 Aligned_cols=132 Identities=13% Similarity=0.068 Sum_probs=81.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCC-CHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-PD----VSFYNSLMEACCREDLLRPAKKLWDQMFAS----GCSG-NLK 471 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 471 (556)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+. +-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555556666666666666666655442110 11 135666667777777777777777776543 1001 134
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 472 TYNILISKFSEVGEIEGALRLFHNMLEK----GVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
.+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666777777888888888888777643 1111 134566677777888888888888887654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00019 Score=69.50 Aligned_cols=130 Identities=6% Similarity=-0.042 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCC-CCH----HhHHHHHHHHHcCCChHHHHHHHHHHHh----CCCCC-ChHh
Q 008727 87 YHSILKSLSLSRQINAIDSVLKQVKVNKIT-LDS----SVYRFIIPSLIQGKNTQKAFSVFNEVKF----NCEDI-GPEI 156 (556)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~ 156 (556)
+..+...|...|++++|.+.+..+.+.--. .+. .+.+.+-..+...|+.+.|..+++.... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 445555666666666666666554432100 111 1112222223344555565555555432 11111 1234
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhC--CC--cc-ChhhHHHHHHHHHhhCcHHHHHHHHHHHH
Q 008727 157 CNSLLAVLASDGYIDNALKMFDEMSHR--GV--EF-STIGFGVFIWKFCENAKLGQVLSMLDEVR 216 (556)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~~--~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 216 (556)
+..|...+...|++++|..++++.... +. .+ ...++..++..|...|++++|...++...
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 555555555556666665555554321 10 00 12234444455555555555555554443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0002 Score=69.44 Aligned_cols=165 Identities=11% Similarity=0.063 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC-CccH----hhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HhH
Q 008727 368 LSNLSKNLCKRNKSDELVEVYKVLSANDY-FTDM----ESYNVMVSFLCTSGRLREAYGVIQEMKR----KGLDPD-VSF 437 (556)
Q Consensus 368 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~ 437 (556)
+..+...|.+.|++++|.+.+..+..... .++. .+.+.+-..+...|+.++|..+++.... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 45566667777777777777766543110 0111 1222223333345667777777666543 222222 345
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHc--CC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCC-C-C--Hh
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFAS--GC---SGNLKTYNILISKFSEVGEIEGALRLFHNMLEK--GVA-P-D--AT 506 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-p-~--~~ 506 (556)
+..+...|...|++++|..+++++... +. .....+|..++..|...|++++|..++++.... .+. | . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777777777777777766543 11 112345666777777777777777777766532 111 1 1 23
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 507 TYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
.+..+...+...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455555666777777777666554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-05 Score=77.53 Aligned_cols=119 Identities=8% Similarity=-0.033 Sum_probs=92.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChh
Q 008727 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452 (556)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 452 (556)
..+.+.|++++|.+.+++..+..+. +...|..+..+|.+.|++++|++.+++..+.... +...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 3467889999999999998886544 6778899999999999999999999999887543 6778888999999999999
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHH--HHccCCHHHHHHHHH
Q 008727 453 PAKKLWDQMFASGCSGNLKTYNILISK--FSEVGEIEGALRLFH 494 (556)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 494 (556)
+|.+.++++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999988763 3344555556555 888899999999888
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.04 E-value=5.8e-05 Score=73.58 Aligned_cols=123 Identities=9% Similarity=-0.063 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcc--------------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD--------------MESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 431 (556)
..+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++..+...
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3455555666666666666666666655322211 23444455555555555555555555544432
Q ss_pred CCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 008727 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490 (556)
Q Consensus 432 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 490 (556)
. +...|..+..+|...|++++|...|+++.+.. +-+...+..+..++.+.|+.+++.
T Consensus 349 ~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 349 A-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 34444455555555555555555555554432 223334444444444444444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.02 E-value=4.3e-05 Score=62.21 Aligned_cols=133 Identities=14% Similarity=0.018 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-cc----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----Hh
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYF-TD----MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-PD----VS 436 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~ 436 (556)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.... ++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666777888888888888776542111 11 236777888888899999999999886653111 11 45
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 437 FYNSLMEACCREDLLRPAKKLWDQMFAS----GCS-GNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.+..+...+...|++++|.+.+++..+. +.. ....++..+...|...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6777888888999999999999887753 111 12456778888899999999999999987653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.00 E-value=8e-05 Score=60.89 Aligned_cols=99 Identities=12% Similarity=0.094 Sum_probs=60.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CC--------C-CCHhHHHHHHHHHhhcCChhhHHHHHHHHH
Q 008727 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRK--------GL--------D-PDVSFYNSLMEACCREDLLRPAKKLWDQMF 462 (556)
Q Consensus 400 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~--------~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 462 (556)
...+......+.+.|++++|+..|.+.... .. . -+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 446667777777788888888888776653 00 0 022455556666666666666666666666
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 463 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 543 334555666666666666666666666666544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.9e-05 Score=60.51 Aligned_cols=84 Identities=13% Similarity=0.083 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 008727 414 GRLREAYGVIQEMKRKGL--DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491 (556)
Q Consensus 414 ~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 491 (556)
|++++|+..|++..+.+. .-+...+..+..+|...|++++|.+.|++..+.. +-+...+..+..+|...|++++|.+
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 445555555555544321 1123344444555555555555555555555432 2234444445555555555555555
Q ss_pred HHHHHHH
Q 008727 492 LFHNMLE 498 (556)
Q Consensus 492 ~~~~m~~ 498 (556)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00015 Score=56.48 Aligned_cols=92 Identities=10% Similarity=-0.010 Sum_probs=47.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 008727 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDV---SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN---LKTYNILISK 479 (556)
Q Consensus 406 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~ 479 (556)
+...+...|++++|...|++..+.... +. ..+..+..++...|++++|...++++.+.. +.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 334445555666666666555554221 11 244455555555566666666665555532 112 3445555555
Q ss_pred HHccCCHHHHHHHHHHHHHC
Q 008727 480 FSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~ 499 (556)
|...|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55666666666666655543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00017 Score=56.01 Aligned_cols=27 Identities=11% Similarity=-0.044 Sum_probs=11.5
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008727 156 ICNSLLAVLASDGYIDNALKMFDEMSH 182 (556)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (556)
++..+..++.+.|++++|...|+...+
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333344444444444444444444433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.96 E-value=2.3e-05 Score=76.77 Aligned_cols=119 Identities=13% Similarity=0.011 Sum_probs=92.5
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHH
Q 008727 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (556)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 420 (556)
+..|++++|++.|++..+.. +.+...+..+..+|.+.|++++|.+.+++..+..+. +...|..+..+|...|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 44689999999999998874 235788889999999999999999999999987654 6778999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHH--HhhcCChhhHHHHHHHHH
Q 008727 421 GVIQEMKRKGLDPDVSFYNSLMEA--CCREDLLRPAKKLWDQMF 462 (556)
Q Consensus 421 ~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~ 462 (556)
+.+++..+.... +...+..+..+ +.+.|++++|.+.+++..
T Consensus 95 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~ 137 (477)
T 1wao_1 95 RDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 137 (477)
T ss_dssp HHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC------CC
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999998886433 34455555555 788899999999988643
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.95 E-value=8.9e-05 Score=72.26 Aligned_cols=131 Identities=11% Similarity=-0.025 Sum_probs=80.8
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HhHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD--------------VSFYNSLMEACCREDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (556)
....|..+...|.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..++++.+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345566666667777777777777777665422211 456667777777777777777777777765
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHH-HHHHHh
Q 008727 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF-EVFNKS 531 (556)
Q Consensus 465 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~-~~~~~m 531 (556)
. +.+...|..+..+|...|++++|...|+++++... -+...+..+..++.+.|+.+++. ..+++|
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34566667777777777777777777777765421 13455666666666666666554 334444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00018 Score=58.80 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC--------CC---------CccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSAN--------DY---------FTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 427 (556)
...+......+.+.|++++|...|+...+. .+ +.+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566667778888888888888876653 10 1133567777788888888888888888887
Q ss_pred HCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 008727 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 428 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (556)
+.... +...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 76433 5677778888888888888888888888775
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.87 E-value=4.5e-05 Score=58.38 Aligned_cols=86 Identities=15% Similarity=0.025 Sum_probs=57.0
Q ss_pred cCChHHHHHHHHHHHhCC--CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHH
Q 008727 378 RNKSDELVEVYKVLSAND--YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455 (556)
Q Consensus 378 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 455 (556)
.|++++|+..|++..+.+ -+.+...+..+...|...|++++|+..|++..+.... +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 466667777777766653 1124456777777777777888888777777776443 4667777777777778888888
Q ss_pred HHHHHHHHc
Q 008727 456 KLWDQMFAS 464 (556)
Q Consensus 456 ~~~~~~~~~ 464 (556)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777664
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00044 Score=54.55 Aligned_cols=113 Identities=10% Similarity=-0.025 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHH
Q 008727 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE----VGEIEGA 489 (556)
Q Consensus 414 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 489 (556)
++.++|.+.|++..+.| .|+.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34566666666666665 22222 5555555566666777777766643 45555666666666 6677777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHhhhCCCc
Q 008727 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQ----ETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 490 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 537 (556)
.+.|++..+.| +...+..|...|.. .+++++|.++|++..+.|..
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 77777776664 44555566666666 66777777777777666643
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00017 Score=68.01 Aligned_cols=89 Identities=12% Similarity=-0.011 Sum_probs=47.4
Q ss_pred HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 008727 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (556)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 514 (556)
..+|..+..+|.+.|++++|++.++++.+.. +.+...|..+..+|...|++++|.+.|+++.+... -+...+..+...
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3455555555556666666666666655532 23445555556666666666666666666554421 134444444555
Q ss_pred HHccCCHHHHH
Q 008727 515 LCQETNLQAAF 525 (556)
Q Consensus 515 ~~~~g~~~~a~ 525 (556)
+.+.++.+++.
T Consensus 351 ~~~~~~~~~a~ 361 (370)
T 1ihg_A 351 KQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.87 E-value=4.1e-05 Score=71.34 Aligned_cols=151 Identities=14% Similarity=0.057 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 444 (556)
...+..+...+.+.|++++|...|+...+.. |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 3445555566667777777777777766542 22211 112233333322221 1377888899
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHH-HHccCCHH
Q 008727 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEG-LCQETNLQ 522 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~-~~~~g~~~ 522 (556)
|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998864 456788999999999999999999999998754 443 3344444443 23456778
Q ss_pred HHHHHHHHhhhCCCc
Q 008727 523 AAFEVFNKSVNHDVM 537 (556)
Q Consensus 523 ~a~~~~~~m~~~~~~ 537 (556)
++..+|++|.+..+.
T Consensus 317 ~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 317 KQKEMYKGIFKGKDE 331 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhCCCCC
Confidence 888899988776653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00014 Score=68.55 Aligned_cols=124 Identities=6% Similarity=-0.051 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHh----------------CCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSA----------------NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 428 (556)
...+..+...+.+.|++++|.+.|++..+ ... .+...|..+..+|.+.|++++|+..+++..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP-VALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34466666777788888888888887765 111 1345677777778888888888888888777
Q ss_pred CCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 008727 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491 (556)
Q Consensus 429 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 491 (556)
.... +...|..+..+|...|++++|.+.|+++.+.. +.+...+..+..++...++.+++.+
T Consensus 302 ~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6432 56677777788888888888888888877753 3355666666666666666665543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00058 Score=54.40 Aligned_cols=96 Identities=15% Similarity=0.015 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------C-----HhHHHHHHHHHhhcCChhhHHHHHHHHHHc-----CC
Q 008727 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDP------D-----VSFYNSLMEACCREDLLRPAKKLWDQMFAS-----GC 466 (556)
Q Consensus 403 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p------~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~ 466 (556)
+......+.+.|++++|+..|++..+..... + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444445555666666666666655542210 1 126666666666777777777666666653 11
Q ss_pred CC-CHHHH----HHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 467 SG-NLKTY----NILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 467 ~~-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
.| +...| .....++...|++++|+..|++.++
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33 34455 6666667777777777777776654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00021 Score=56.94 Aligned_cols=97 Identities=14% Similarity=-0.016 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC--------H-----HHHHHHHHHHHccCCHHHHHHHHHHHHHC---
Q 008727 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN--------L-----KTYNILISKFSEVGEIEGALRLFHNMLEK--- 499 (556)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 499 (556)
..+......+.+.|++++|.+.|++..+. .|+ . ..|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 44566777888999999999999999985 343 2 38999999999999999999999999874
Q ss_pred --CCCCC-HhhH----HHHHHHHHccCCHHHHHHHHHHhhhC
Q 008727 500 --GVAPD-ATTY----TSLLEGLCQETNLQAAFEVFNKSVNH 534 (556)
Q Consensus 500 --g~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 534 (556)
.+.|+ ...| .....++...|++++|+..|++.++.
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 12554 4567 78889999999999999999998763
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0014 Score=65.38 Aligned_cols=154 Identities=9% Similarity=0.055 Sum_probs=121.9
Q ss_pred ChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcC
Q 008727 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR----------LREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449 (556)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 449 (556)
..++|.+.++.+...++. +..+|+.--..+...|+ ++++++.++.+.+...+ +..+|+.-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 345778888888876655 56677766666666666 89999999999988666 7788888888888888
Q ss_pred --ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc--------
Q 008727 450 --LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG-EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE-------- 518 (556)
Q Consensus 450 --~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-------- 518 (556)
+++++.+.++++.+.. +-|..+|+.-..++.+.| .++++++.++++++..+. |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 6699999999999876 668888988888888888 899999999999876544 677777766666552
Q ss_pred ------CCHHHHHHHHHHhhhCCCc
Q 008727 519 ------TNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 519 ------g~~~~a~~~~~~m~~~~~~ 537 (556)
+.++++++.+++.++.++.
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC
Confidence 5679999999999887765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=3.7e-05 Score=58.04 Aligned_cols=92 Identities=14% Similarity=0.115 Sum_probs=53.6
Q ss_pred CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-------Hh
Q 008727 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD-------AT 506 (556)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 506 (556)
+...+..+...+...|++++|.+.|++..+.. +.+...|..+..+|...|++++|.+.+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34455666666666777777777777666653 345566666677777777777777777777643 343 23
Q ss_pred hHHHHHHHHHccCCHHHHHHHH
Q 008727 507 TYTSLLEGLCQETNLQAAFEVF 528 (556)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~ 528 (556)
.+..+..++...|+.++|.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 3344444444444444444333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00033 Score=53.21 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 418 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
+|+..|++..+.... +...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555544322 44555555556666666666666666655543 3334555555556666666666666665555
Q ss_pred H
Q 008727 498 E 498 (556)
Q Consensus 498 ~ 498 (556)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00016 Score=67.33 Aligned_cols=139 Identities=9% Similarity=-0.027 Sum_probs=76.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHH
Q 008727 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419 (556)
Q Consensus 340 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 419 (556)
.+..+++++|+..|++..... |+... +...|+.+++...+ ....|..+..+|.+.|++++|
T Consensus 189 ~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~~~~g~~~~A 249 (338)
T 2if4_A 189 LFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACLIKLKRYDEA 249 (338)
T ss_dssp TCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHHHTTTCCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHHHHcCCHHHH
Confidence 345789999999999987753 33221 22233333333222 123778888899999999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHH
Q 008727 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK-FSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 420 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~ 498 (556)
+..+++..+.... +...|..+..+|...|++++|...|+++.+.. +-+...+..+... ....+..+++.+.|.+|..
T Consensus 250 ~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 250 IGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999998886433 67888899999999999999999999988653 2244455555554 3345667788888888875
Q ss_pred C
Q 008727 499 K 499 (556)
Q Consensus 499 ~ 499 (556)
.
T Consensus 328 ~ 328 (338)
T 2if4_A 328 G 328 (338)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0053 Score=61.23 Aligned_cols=150 Identities=8% Similarity=0.017 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC----------HhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhC-
Q 008727 135 TQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY----------IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA- 203 (556)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g- 203 (556)
.++|++.++++....++ +..+|+.--.++...|+ ++++++.++.+.+.+.+ +..+|..-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34556666666555433 45566655555555555 66666666666665422 4455555555566666
Q ss_pred -cHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-------
Q 008727 204 -KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK-RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM------- 274 (556)
Q Consensus 204 -~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------- 274 (556)
+++++++.++.+.+. .|.+..+|+.-...+.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 123 PNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 556666666666665 5555666665555555666 667777777776665433 555666555554432
Q ss_pred -------CCHHHHHHHHHHHHhc
Q 008727 275 -------GSVFEREVVLKKKRKL 290 (556)
Q Consensus 275 -------~~~~~a~~~~~~~~~~ 290 (556)
+.++++++.+++....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhh
Confidence 3356666666665553
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0022 Score=50.41 Aligned_cols=110 Identities=12% Similarity=0.039 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh----cCChhhHH
Q 008727 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----EDLLRPAK 455 (556)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~ 455 (556)
++++|.+.|++..+.+. .... +...|...+.+++|.+.|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~---~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE---MFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC---Hhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45566666666655542 1122 4455555556666777776666653 45556666666665 56777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCC
Q 008727 456 KLWDQMFASGCSGNLKTYNILISKFSE----VGEIEGALRLFHNMLEKG 500 (556)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 500 (556)
+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777776643 45555666666666 677777777777777665
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00047 Score=67.10 Aligned_cols=66 Identities=8% Similarity=-0.084 Sum_probs=34.1
Q ss_pred chhhHHHHHHHHhccCCHHHHHHHHHHHhh-----CCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRI-----REC-KPDF-IAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 225 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~-~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
....++.|...|...|++++|+.++++..+ .|. .|++ .+.+.+-.++...+.+++|+.+|..+.+.
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666555555432 121 1222 23344444555666666666666666553
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.52 E-value=8.1e-05 Score=56.10 Aligned_cols=90 Identities=10% Similarity=-0.041 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC------hHhH
Q 008727 84 PLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG------PEIC 157 (556)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 157 (556)
...|..+...+...|++++|...|+...+.. +.+...+..+...+.+.|++++|++.+++.....+. + ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 3455555566666666666666666665543 345555666666666666666666666666554322 2 3344
Q ss_pred HHHHHHHHhcCCHhHHHH
Q 008727 158 NSLLAVLASDGYIDNALK 175 (556)
Q Consensus 158 ~~li~~~~~~g~~~~a~~ 175 (556)
..+..++...|+.+.|.+
T Consensus 82 ~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhHhhhHh
Confidence 444444444444444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00078 Score=51.06 Aligned_cols=79 Identities=11% Similarity=-0.046 Sum_probs=53.2
Q ss_pred HHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008727 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181 (556)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (556)
.+...|+...+.. +.+...+..+...|...|++++|+..|++.....+. +...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3555666666554 445666777777777777777777777777665433 56677777777777777777777777765
Q ss_pred h
Q 008727 182 H 182 (556)
Q Consensus 182 ~ 182 (556)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00034 Score=68.13 Aligned_cols=123 Identities=11% Similarity=-0.001 Sum_probs=63.8
Q ss_pred HhcCCHHHHHHHHHHHHHC---CCCCC----HhHHHHHHHHHhhcCChhhHHHHHHHHHHc-----C-CCCC-HHHHHHH
Q 008727 411 CTSGRLREAYGVIQEMKRK---GLDPD----VSFYNSLMEACCREDLLRPAKKLWDQMFAS-----G-CSGN-LKTYNIL 476 (556)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l 476 (556)
...|++++|+.++++..+. -+-|+ ..+++.|..+|...|++++|..++++..+. | -.|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456666666666554432 11111 235566666666666666666666655432 1 0121 3446666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHC-----CCC-CC-HhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 477 ISKFSEVGEIEGALRLFHNMLEK-----GVA-PD-ATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
...|...|++++|+.++++..+. |.. |+ ..+...+-.++...|.+++|..++.++.+
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665532 211 11 12233344455556666666666666644
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00038 Score=55.35 Aligned_cols=94 Identities=9% Similarity=0.074 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCC----------hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 008727 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL----------LRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483 (556)
Q Consensus 414 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 483 (556)
+.+++|.+.++...+.... +...|+.+..++...++ +++|+..|++.++.. +.+...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 3444555555554444322 44444444444444443 336666666666543 23445566666666554
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 008727 484 -----------GEIEGALRLFHNMLEKGVAPDATTYTSL 511 (556)
Q Consensus 484 -----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l 511 (556)
|++++|++.|++.++. .|+...|...
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~a 130 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKS 130 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 3677777777777644 4554444333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0017 Score=46.38 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 008727 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463 (556)
Q Consensus 403 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 463 (556)
+..+...+...|++++|...+++..+.... +...+..+..++...|++++|.+.+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333444444444444444444444433211 233334444444444444444444444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0006 Score=54.19 Aligned_cols=100 Identities=9% Similarity=-0.017 Sum_probs=75.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 008727 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR----------LREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445 (556)
Q Consensus 376 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 445 (556)
.+.+.+++|.+.++...+..+. +...|..+..++...++ +++|+..|++.++.... +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 4556778888888888776655 77778777777777665 45899999998887544 567888899988
Q ss_pred hhcC-----------ChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008727 446 CRED-----------LLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (556)
Q Consensus 446 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (556)
...| ++++|.+.|++..+. .|+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 8764 899999999999985 6776666544443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0018 Score=46.26 Aligned_cols=63 Identities=2% Similarity=-0.049 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 148 (556)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...|++....
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444445555555555555555554433 233444455555555555555555555555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0011 Score=48.72 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=40.1
Q ss_pred CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
+...+..+..+|...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556666666666666666666666666653 33455666666666666666666666666553
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0029 Score=46.37 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=36.7
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008727 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182 (556)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (556)
+...+..+...|...|++++|+..|++..+..+. +..+|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555666666666666666665554332 445566666666666666666666655543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.013 Score=53.79 Aligned_cols=137 Identities=10% Similarity=0.003 Sum_probs=82.5
Q ss_pred ccHhhHHHHHHHHHh--cC---CHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhh---cC-Ch-hhH---HHHHHHHHH
Q 008727 398 TDMESYNVMVSFLCT--SG---RLREAYGVIQEMKRKGLDPD-VSFYNSLMEACCR---ED-LL-RPA---KKLWDQMFA 463 (556)
Q Consensus 398 ~~~~~~~~li~~~~~--~~---~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~---~~-~~-~~a---~~~~~~~~~ 463 (556)
.+...|...+++... .+ ...+|..+|++..+. .|+ ...|..+..+|.. .+ .. ... .+.++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 355666666655432 22 346777777777775 343 2334333333321 11 10 111 111111111
Q ss_pred -cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcc
Q 008727 464 -SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538 (556)
Q Consensus 464 -~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 538 (556)
..-+.+..+|..+...+...|++++|...++++++.+ |+...|..+...+.-.|++++|.+.+++..+.++.+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 1125567778777777777788888888888888774 677777777777888888888888888888877654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0079 Score=47.23 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHccCCHHHHHHHH
Q 008727 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVG---EIEGALRLFHNMLEKGVAP--DATTYTSLLEGLCQETNLQAAFEVF 528 (556)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~ 528 (556)
+.+.|.+..+.| .++..+.-.+..++++.+ +.++++.+|++..+.. .| +...+-.+.-+|.+.|++++|.+++
T Consensus 17 ~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 333344333333 244444444444455444 3334555555544432 12 1223333444445555555555555
Q ss_pred HHhhhCCC
Q 008727 529 NKSVNHDV 536 (556)
Q Consensus 529 ~~m~~~~~ 536 (556)
+++++..|
T Consensus 95 ~~lL~ieP 102 (152)
T 1pc2_A 95 RGLLQTEP 102 (152)
T ss_dssp HHHHHHCT
T ss_pred HHHHhcCC
Confidence 55544443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0033 Score=45.87 Aligned_cols=57 Identities=11% Similarity=0.264 Sum_probs=33.5
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 442 MEACCREDLLRPAKKLWDQMFASGCSGNLK-TYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
...+...|++++|.+.++++.+.. +.+.. .|..+..+|...|++++|.+.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344555666666666666666542 23344 5666666666666666666666666654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.043 Score=50.32 Aligned_cols=74 Identities=11% Similarity=0.026 Sum_probs=61.2
Q ss_pred CCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 008727 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509 (556)
Q Consensus 432 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 509 (556)
..+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 4467788887777777899999999999999874 78888888888899999999999999998865 56777764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.14 Score=53.85 Aligned_cols=150 Identities=12% Similarity=0.070 Sum_probs=80.2
Q ss_pred HHcCCChHHHHH-HHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHH
Q 008727 129 LIQGKNTQKAFS-VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207 (556)
Q Consensus 129 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 207 (556)
....+++++|.+ ++..+. +......++..+.+.|..++|.++.+.-. .-.......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence 345666776665 442211 02233666666777777777766542111 11223455677777
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287 (556)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 287 (556)
|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++-+..
T Consensus 671 A~~~~~~~--------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 671 ARDLLTDE--------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHTTC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhh--------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 77765432 3356777777777777777777777777652 223333444455555544444443
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008727 288 RKLGVAPRTNDYREFILGLIVERRICEAKELG 319 (556)
Q Consensus 288 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 319 (556)
...| -++....++.+.|++++|.+++
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHH
Confidence 3332 1233333444555555555543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0093 Score=56.96 Aligned_cols=84 Identities=12% Similarity=0.062 Sum_probs=44.5
Q ss_pred CChhhHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----C-CCCC-HhhHHHHHHH
Q 008727 449 DLLRPAKKLWDQMFAS---GCSGN----LKTYNILISKFSEVGEIEGALRLFHNMLEK-----G-VAPD-ATTYTSLLEG 514 (556)
Q Consensus 449 ~~~~~a~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~l~~~ 514 (556)
|++++|..++++..+. -+.|+ ..+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555565555555432 11111 345566666666666666666666665432 2 1121 2345566666
Q ss_pred HHccCCHHHHHHHHHHhh
Q 008727 515 LCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 515 ~~~~g~~~~a~~~~~~m~ 532 (556)
|...|++++|..++++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 666666666666666553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.03 Score=40.09 Aligned_cols=65 Identities=8% Similarity=-0.002 Sum_probs=34.3
Q ss_pred CHhHHHHHHHHHhhcCC---hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 434 DVSFYNSLMEACCREDL---LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 434 ~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
|...+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|...|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444455554443332 456666666665543 334455555555556666666666666666543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.023 Score=41.18 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=53.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHH
Q 008727 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDAT-TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541 (556)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 541 (556)
....+...|++++|.+.|++..+... .+.. .+..+..+|...|++++|.+.|++.++.++.....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 45678889999999999999987632 2456 78888899999999999999999999888765443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.025 Score=54.08 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=41.8
Q ss_pred hcCChhhHHHHHHHHHHcC---CCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----C-CCCC-HhhHHHHH
Q 008727 447 REDLLRPAKKLWDQMFASG---CSGN----LKTYNILISKFSEVGEIEGALRLFHNMLEK-----G-VAPD-ATTYTSLL 512 (556)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~l~ 512 (556)
..|++++|..++++..+.. +.|+ ..+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 4455555555555554320 1111 334555555555566666665555555431 1 1111 23355555
Q ss_pred HHHHccCCHHHHHHHHHHh
Q 008727 513 EGLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~m 531 (556)
..|...|++++|..++++.
T Consensus 379 ~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHH
Confidence 5566666666666666554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.016 Score=55.39 Aligned_cols=89 Identities=10% Similarity=-0.008 Sum_probs=62.4
Q ss_pred hhCcHHHHHHHHHHHHhcc-----CCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhh-----CC-CCCCH-HHHHHHH
Q 008727 201 ENAKLGQVLSMLDEVRKRE-----NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI-----RE-CKPDF-IAYRIVA 268 (556)
Q Consensus 201 ~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~-~~p~~-~~~~~ll 268 (556)
..|++++|+.++++..... ...|....+++.|...|...|++++|+.++++... .| -.|++ .+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3477888888888776431 22233345677888888888898888888887653 22 23443 4678888
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 008727 269 EEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~ 289 (556)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888877554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.16 Score=53.48 Aligned_cols=47 Identities=4% Similarity=0.012 Sum_probs=24.5
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHH
Q 008727 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216 (556)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 216 (556)
....|++++|.++.+.+ .+...|..+...+.+.|+++.|++.|..+.
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34455555555553322 233455555555555555555555555543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.024 Score=54.26 Aligned_cols=63 Identities=11% Similarity=-0.112 Sum_probs=32.4
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhh-----CC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 227 VIAVLIIHGFCKGKRVEEAFKVLDELRI-----RE-CKPDF-IAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 227 ~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~-~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
.+++.+...|...|++++|+.++++... .| -.|++ .+++.|...|...|++++|+.++++..+
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445555555555555555555554432 11 12222 3455566666666666666666655443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.064 Score=47.12 Aligned_cols=83 Identities=8% Similarity=0.037 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHhhc-----CChhhHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcc-C
Q 008727 416 LREAYGVIQEMKRKGLDPD---VSFYNSLMEACCRE-----DLLRPAKKLWDQMFASGCSG--NLKTYNILISKFSEV-G 484 (556)
Q Consensus 416 ~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~-g 484 (556)
...|...+++..+. .|+ -..|..+...|.+. |+.++|.+.|++..+. .| +..++......++.. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 45566666666664 444 34666777777663 7777777777777774 34 356666666666663 7
Q ss_pred CHHHHHHHHHHHHHCCCC
Q 008727 485 EIEGALRLFHNMLEKGVA 502 (556)
Q Consensus 485 ~~~~A~~~~~~m~~~g~~ 502 (556)
+.+++.+.+++.++....
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 777777777777766444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.051 Score=38.90 Aligned_cols=66 Identities=5% Similarity=-0.105 Sum_probs=35.0
Q ss_pred CCHHhHHHHHHHHHcCCC---hHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008727 117 LDSSVYRFIIPSLIQGKN---TQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183 (556)
Q Consensus 117 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 183 (556)
.+...+..+..++...++ .++|..++++.....+. ++.+...+...+.+.|++++|+..|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344455555554433322 45555555555554333 4555555555566666666666666665554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.41 Score=36.18 Aligned_cols=149 Identities=9% Similarity=0.047 Sum_probs=89.7
Q ss_pred hHHHHHHH--HHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHH
Q 008727 121 VYRFIIPS--LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198 (556)
Q Consensus 121 ~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 198 (556)
+...|+++ +.-.|..++..++..+..... +..-||-+|.-....-+-+-..++++.+-+. .|.
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi--------- 71 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL--------- 71 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG---------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc---------
Confidence 34444444 445677778888777776542 5666777777666666666666666655331 121
Q ss_pred HHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008727 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278 (556)
Q Consensus 199 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 278 (556)
...|++......+-.+.. +.......++.....|.-+.-.+++.++.. +.+|+....-.+..+|.+.|+..
T Consensus 72 -s~C~NlKrVi~C~~~~n~-------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r 142 (172)
T 1wy6_A 72 -DKCQNLKSVVECGVINNT-------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDER 142 (172)
T ss_dssp -GGCSCTHHHHHHHHHTTC-------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHH
T ss_pred -HhhhcHHHHHHHHHHhcc-------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchh
Confidence 122333333333322211 133444556777777888888888777543 23667777777778888888888
Q ss_pred HHHHHHHHHHhcCCC
Q 008727 279 EREVVLKKKRKLGVA 293 (556)
Q Consensus 279 ~a~~~~~~~~~~~~~ 293 (556)
++.+++.+.-+.|++
T Consensus 143 ~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 143 DATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhH
Confidence 888888877777764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.25 Score=39.85 Aligned_cols=101 Identities=10% Similarity=0.115 Sum_probs=48.0
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHH
Q 008727 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207 (556)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 207 (556)
...+.|+++.|.++.+.+. +...|..|.+.....|+++-|.+.|..... +..+.-.|...|+.++
T Consensus 14 LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 3445555555555555441 455566666666666666666665554432 2223333444555544
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHH
Q 008727 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251 (556)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 251 (556)
..++-+....+ | -++.....+.-.|+++++.++|.+
T Consensus 79 L~kla~iA~~~-g-------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTR-E-------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHT-T-------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHC-c-------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44443333332 1 112223334445555555555543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.67 Score=37.33 Aligned_cols=130 Identities=15% Similarity=0.091 Sum_probs=93.9
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 170 (556)
.......|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|..... +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 55566889999999988765 3688999999999999999999999998753 45666677778888
Q ss_pred hHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHH
Q 008727 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250 (556)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 250 (556)
+...++-+.....| -++.....+...|+++++.++|.+..+. ..++ ......|..+.|.++.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~-------~eA~----~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSL-------PLAY----AVAKANGDEAAASAFLE 139 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCH-------HHHH----HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCCh-------HHHH----HHHHHcCcHHHHHHHHH
Confidence 88777766665554 2445555677889999999998765432 1111 11122456677777776
Q ss_pred HH
Q 008727 251 EL 252 (556)
Q Consensus 251 ~m 252 (556)
++
T Consensus 140 ~~ 141 (177)
T 3mkq_B 140 QA 141 (177)
T ss_dssp HT
T ss_pred Hh
Confidence 65
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.074 Score=40.07 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHHCCCCC--CHhhHHHHHHHHHccCCHHHHHH
Q 008727 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG---ALRLFHNMLEKGVAP--DATTYTSLLEGLCQETNLQAAFE 526 (556)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~ 526 (556)
..+.+-|......| .++..+--.+..++.+..+..+ ++.++++....+ .| .....-.+.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444444443333 2444444445555555554444 555555544432 11 22223334445566666666666
Q ss_pred HHHHhhhCCC
Q 008727 527 VFNKSVNHDV 536 (556)
Q Consensus 527 ~~~~m~~~~~ 536 (556)
+++.+++..|
T Consensus 96 ~~~~lL~~eP 105 (126)
T 1nzn_A 96 YVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHhCC
Confidence 6666655544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.11 Score=40.70 Aligned_cols=82 Identities=12% Similarity=0.047 Sum_probs=49.1
Q ss_pred hHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC---ChHHHHHHHHHHHhCC-CCCChHhHHHHHHHHHhcCCHhHHHHH
Q 008727 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK---NTQKAFSVFNEVKFNC-EDIGPEICNSLLAVLASDGYIDNALKM 176 (556)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~ 176 (556)
..+++.|.+..+.+ +++..+.-.+.-++++.+ +.++++.+++.+.+.. +.-+...+-.|.-+|.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34455555555544 356666666666666666 5557777777766653 111344555566666777777777777
Q ss_pred HHHHHhC
Q 008727 177 FDEMSHR 183 (556)
Q Consensus 177 ~~~m~~~ 183 (556)
++.+.+.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7777664
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.26 Score=43.36 Aligned_cols=88 Identities=14% Similarity=0.105 Sum_probs=58.7
Q ss_pred ChHHHHHHHHHHHhCCCC-ccHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhc-CChh
Q 008727 380 KSDELVEVYKVLSANDYF-TDMESYNVMVSFLCT-----SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE-DLLR 452 (556)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~ 452 (556)
....|...+++..+..+. .+...|..+...|.+ -|+.++|.+.|++..+.+..-+..++......++.. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 345666667766665322 124467777777777 378888888888887764322366666677777774 7888
Q ss_pred hHHHHHHHHHHcCCC
Q 008727 453 PAKKLWDQMFASGCS 467 (556)
Q Consensus 453 ~a~~~~~~~~~~~~~ 467 (556)
++.+.+++.......
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 888888888876433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.19 Score=38.96 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHHhcCCh------hHHHHHHHHhHhCCCCCCHH----hHHHHHHH---HHcCCChHHHHHHHHHHHhC
Q 008727 82 HSPLSYHSILKSLSLSRQI------NAIDSVLKQVKVNKITLDSS----VYRFIIPS---LIQGKNTQKAFSVFNEVKFN 148 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~----~~~~li~~---~~~~~~~~~a~~~~~~~~~~ 148 (556)
.|.++|-..+..+-+.|++ +..+++|++.... ++|+.. .|-.|.-- +...++.++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4778888888888888888 8888999988774 455421 11111111 12347888888888888665
Q ss_pred CCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccC
Q 008727 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188 (556)
Q Consensus 149 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 188 (556)
.-+- ..+|....+.-.+.|+++.|.+++......+..|.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 3333 66777777777888888888888888888765543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.13 Score=37.60 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=44.1
Q ss_pred CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASG------CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+..-+..+...+...+++..|...|+.+.+.- -.+....+..|..+|.+.|++++|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445567777777777777777777766531 1234566777777777777777777777777653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.76 Score=34.79 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 008727 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501 (556)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 501 (556)
.....+......|.-+.-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++.+.|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344444444444444444444443322 144444444444555555555555555555554443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.23 Score=36.26 Aligned_cols=65 Identities=8% Similarity=-0.071 Sum_probs=30.3
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHHHhCC------CCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008727 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC------EDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182 (556)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (556)
+..-+..|...+.+.|+++.|...|+...+.. ......++..|..++.+.|+++.|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444445555555555555555555543310 011333444455555555555555555554444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.0052 Score=57.69 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=18.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008727 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273 (556)
Q Consensus 232 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 273 (556)
++..|-..|.+++.+.+++.-... -+.....|+-|.-.|++
T Consensus 235 lv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 235 LINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 275 (624)
T ss_dssp GGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHh
Confidence 344445555555555555544321 12234444444444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.10 E-value=1.1 Score=34.77 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=29.3
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 008727 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502 (556)
Q Consensus 449 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 502 (556)
+|+++|.++|+.+++.. +-=...|.....--.++|+...|.+++.+.+..+.+
T Consensus 74 ~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 55666666666665442 111444544444455666666666666666655444
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=94.06 E-value=3.1 Score=37.19 Aligned_cols=114 Identities=12% Similarity=0.089 Sum_probs=55.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHH----HHHHHHhCCCccChhhHHHHH
Q 008727 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALK----MFDEMSHRGVEFSTIGFGVFI 196 (556)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~~~~~~~~~~~~li 196 (556)
+|..+..-|.+.+++++|++++..-.. .+.+.|+...|-+ +.+...+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 455566667777778777777655421 2334455444333 344455556666666655555
Q ss_pred HHHHhhCc-----HHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHH
Q 008727 197 WKFCENAK-----LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVL 249 (556)
Q Consensus 197 ~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 249 (556)
..+..... ..-..+.+....+..+....++.....+...|.+.|++.+|..-|
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 54433211 111111122222221112233445555555566666665555544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.30 E-value=0.98 Score=33.98 Aligned_cols=83 Identities=18% Similarity=0.087 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhh---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHH
Q 008727 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP---AKKLWDQMFASGCSG--NLKTYNILISKFSEVGEIEGA 489 (556)
Q Consensus 415 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A 489 (556)
....+.+-+.+....|. |+..+-..+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555555555444 567777777778877776555 788888877754 23 233444566788888888888
Q ss_pred HHHHHHHHHC
Q 008727 490 LRLFHNMLEK 499 (556)
Q Consensus 490 ~~~~~~m~~~ 499 (556)
.+.++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888865
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.01 E-value=5 Score=36.20 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=33.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHH----HHHHHhCCCccChhhHHHHH
Q 008727 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKM----FDEMSHRGVEFSTIGFGVFI 196 (556)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~~~~~~~~~li 196 (556)
+|..+..-|.+.+++++|++++-.-. ..+.+.|+...|-++ ++...+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34455556677777777777655432 123334443333322 34444555666665555555
Q ss_pred HHHH
Q 008727 197 WKFC 200 (556)
Q Consensus 197 ~~~~ 200 (556)
..+.
T Consensus 102 ~L~~ 105 (336)
T 3lpz_A 102 GCLR 105 (336)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.73 E-value=0.015 Score=54.68 Aligned_cols=198 Identities=9% Similarity=0.074 Sum_probs=127.8
Q ss_pred CCCCCCChhHHHHHHhcCCCCCC-------CHHHHHHHhhhhhcc-ChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh
Q 008727 25 RPARKWTPLLEQTLHQLGLRDSL-------SPSLVARVINPYLLT-HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSL 96 (556)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~l~~~~~~-~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~ 96 (556)
.-+.-|+..-.+.|....++..+ +|+.+..|+...... .++.-++++..+++. . .++..=+.++-+|++
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-A--RESYVETELIFALAK 128 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-C--CSTTTTHHHHHHHHT
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-h--cccccHHHHHHHHHh
Confidence 34456877777766665444322 455566666665553 355556655544332 2 233444578889999
Q ss_pred cCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhC--------------------CCCCChHh
Q 008727 97 SRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN--------------------CEDIGPEI 156 (556)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~~~ 156 (556)
.++..+..+++. .|+..-...+.+-|...|.++.|.-+|..+... ...-++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 988776554432 356666667777787888877777777655311 11236678
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHH
Q 008727 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236 (556)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 236 (556)
|-.+-.+|...+.+.-|.-.--.++-. ..-...++.-|-..|.+++.+.+++.... .......+|+-|.-.|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglg---lErAHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTT---STTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhC---CCchhHHHHHHHHHHH
Confidence 999999999999988886664444321 12223456678889999999999988873 3555577888888888
Q ss_pred hccC
Q 008727 237 CKGK 240 (556)
Q Consensus 237 ~~~~ 240 (556)
++-.
T Consensus 274 sKY~ 277 (624)
T 3lvg_A 274 SKFK 277 (624)
T ss_dssp HSSC
T ss_pred HhcC
Confidence 8763
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.71 E-value=9.4 Score=36.42 Aligned_cols=52 Identities=12% Similarity=0.097 Sum_probs=29.8
Q ss_pred ccChhHHHHHHHHhhh----CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHh
Q 008727 61 LTHHSLALGFFNWASQ----QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKV 112 (556)
Q Consensus 61 ~~~~~~a~~~f~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 112 (556)
.+++..|++-+..+.+ ..+...+......++..|...++++...+.+..+.+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4556666665544432 233444556666677777777777776665554443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.56 E-value=5.5 Score=43.47 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=68.2
Q ss_pred hhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-----------------------CCHH
Q 008727 64 HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKIT-----------------------LDSS 120 (556)
Q Consensus 64 ~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------------------~~~~ 120 (556)
...+..+..|.. .++..-..+..++...|++++|.+.|++... |+. .-..
T Consensus 828 ~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 900 (1139)
T 4fhn_B 828 YNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSC 900 (1139)
T ss_dssp TTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSHH
T ss_pred HHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHHH
Confidence 344555555542 1333333455666677777777777765421 100 0112
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh----HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHH
Q 008727 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP----EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196 (556)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 196 (556)
-|..++..+-+.|.++.+.+.-....+...+-+. ..|..+...+...|++++|...+-.+..... -......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3455566666666666666655554432211111 2466666666666777776666666654432 233444555
Q ss_pred HHHHhhCcH
Q 008727 197 WKFCENAKL 205 (556)
Q Consensus 197 ~~~~~~g~~ 205 (556)
..+|..|..
T Consensus 979 ~~lce~~~~ 987 (1139)
T 4fhn_B 979 NQLTKQGKI 987 (1139)
T ss_dssp HHHHHHCCH
T ss_pred HHHHhCCCh
Confidence 555555443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.45 E-value=15 Score=38.37 Aligned_cols=276 Identities=10% Similarity=0.009 Sum_probs=145.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCChhhHH
Q 008727 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDF--IAYRIVAEEFKLMGSVFEREVVLKKKRKLGV-------APRTNDYR 300 (556)
Q Consensus 230 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~ 300 (556)
...--+....|+.++++.+++.....+-..+. ..-..+.-+....|...++.+++.......- .+....-.
T Consensus 378 A~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gA 457 (963)
T 4ady_A 378 ATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGA 457 (963)
T ss_dssp HHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHH
T ss_pred HHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHH
Confidence 33445667788888888888776642111222 2233333445556665667777766554321 01111122
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHcCCCCCCHHHHHHH----HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-
Q 008727 301 EFILGLIVERR-ICEAKELGEVIVSGKFTIDDDVLNAL----IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN- 374 (556)
Q Consensus 301 ~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~- 374 (556)
.+--+++-.|. -+++.+.+..++...-. .....+. +-.+..|+.+....++..+.+.. +..+...+.-+
T Consensus 458 aLGLGla~~GS~~eev~e~L~~~L~dd~~--~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgL 532 (963)
T 4ady_A 458 SLGIGLAAMGSANIEVYEALKEVLYNDSA--TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGL 532 (963)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHTCCH--HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhcCCH--HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHH
Confidence 23223333332 23445555544432211 1111222 22234567666666666665532 33333334333
Q ss_pred -HHhcCChHHHHHHHHHHHhCCCCccHhhHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCCh
Q 008727 375 -LCKRNKSDELVEVYKVLSANDYFTDMESYN--VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451 (556)
Q Consensus 375 -~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 451 (556)
+...|+.+.+..+.+.+.... .|....-. ++.-+|+..|+.....+++..+.... ..++.-...+.-++...|+.
T Consensus 533 Gll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 533 ALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC
T ss_pred HhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH
Confidence 446788888888888877641 22222222 23345667788877777888887642 22333333333344456777
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 008727 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI-EGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (556)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 516 (556)
+.+.++++.+.+.+ .|....-..+.-+....|+. .+|.+++..+.. .+|..+-...+.++.
T Consensus 611 e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 611 TTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp SSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 77888887776654 55555545555555555554 577888888863 245555444444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.37 E-value=0.81 Score=42.94 Aligned_cols=71 Identities=13% Similarity=0.061 Sum_probs=50.8
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHhhHH
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE-----KGVAPDATTYT 509 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 509 (556)
...++..+...|+++++...+..+.... +-+...|..++.+|.+.|+..+|++.|++..+ .|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445566677788888887777777653 55677788888888888888888888777654 37888766543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.01 E-value=1.4 Score=45.03 Aligned_cols=54 Identities=7% Similarity=0.020 Sum_probs=44.2
Q ss_pred HHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 008727 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253 (556)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 253 (556)
+.+...|+++.|+++-++.... .|.+-.+|..|...|...|+++.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3455678888888888888866 77888888888999999999999888888874
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=90.87 E-value=14 Score=36.88 Aligned_cols=114 Identities=8% Similarity=0.015 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHHHhCCCCccHhhHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHH
Q 008727 380 KSDELVEVYKVLSANDYFTDMESYN----VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455 (556)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 455 (556)
+.+.|...+....+.... +..... .+.......+...++...+....... ++.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 556666666665432211 222221 12222222232334445555443332 22222222333334556666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
..|+.|..... ....-.--+..++...|+.++|..+|+.+.
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666654211 112222234445566666666666666665
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.61 E-value=1.4 Score=44.97 Aligned_cols=54 Identities=13% Similarity=-0.009 Sum_probs=41.4
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 443 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
..|...|+++-|+++-++....- +-+..+|..|..+|...|+++.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34556788888888888887752 3447788888888888888888888887763
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.32 E-value=2.9 Score=29.69 Aligned_cols=63 Identities=8% Similarity=0.055 Sum_probs=40.0
Q ss_pred ChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 99 QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
+.-++++-++.+...++-|++.+..+.+++|.+.+++..|+++|+.++..-.. ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHHH
Confidence 44556666666666667777777777777777777777777777777543211 2334555544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.21 E-value=1.1 Score=41.94 Aligned_cols=72 Identities=8% Similarity=0.075 Sum_probs=54.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCccChhhHH
Q 008727 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH-----RGVEFSTIGFG 193 (556)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~ 193 (556)
+...++..+...|++++|+..+..+.... +.+...|..+|.++.+.|+..+|++.|+...+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 44556777788888888888888876653 34777888888888888888888888887643 48888776654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.13 E-value=13 Score=35.39 Aligned_cols=97 Identities=8% Similarity=-0.039 Sum_probs=48.2
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCc---hhhHHHHHHHHhccCCHHHHHHHHHHHhh----CCCCCCH--HH
Q 008727 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMING---SVIAVLIIHGFCKGKRVEEAFKVLDELRI----RECKPDF--IA 263 (556)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~p~~--~~ 263 (556)
..|...+...|++.+|..++..+........+. ...+..-++.|...+++..|..++..... ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 345555666666666666666655321111111 22344555666666666666666655431 1112221 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 264 YRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 264 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
|...+..+...+++.+|-..|.+...
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44455555556666666655555443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.96 E-value=3.8 Score=29.15 Aligned_cols=47 Identities=11% Similarity=0.175 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+..+-++.+....+.|++....+.+.+|-+.+++..|.++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555555555443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.35 E-value=16 Score=33.97 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=10.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHH
Q 008727 231 LIIHGFCKGKRVEEAFKVLDEL 252 (556)
Q Consensus 231 ~li~~~~~~~~~~~A~~~~~~m 252 (556)
.-+..|...+++..+...+...
T Consensus 144 le~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 144 LESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 3344455555555555555443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.62 E-value=30 Score=36.27 Aligned_cols=257 Identities=12% Similarity=0.083 Sum_probs=136.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHcCCC--CCC---H-HHHHHHHHH-
Q 008727 270 EFKLMGSVFEREVVLKKKRKLGVAPRTN--DYREFILGLIVERRICEAKELGEVIVSGKF--TID---D-DVLNALIGS- 340 (556)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~---~-~~~~~l~~~- 340 (556)
+....|+.++++.+++.....+-..+.. .-..+.-+....|..+++..++...+...- ..+ . ....+.+..
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3556777778877776654421111222 122223355566665667776666554321 011 1 111222211
Q ss_pred H-hcC-ChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHH--HHHhcC
Q 008727 341 V-SSI-DPRSAIVFFNFMIEKGRVPTLSTLS--NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS--FLCTSG 414 (556)
Q Consensus 341 ~-~~~-~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~ 414 (556)
+ ..| .-+++.+.+..+...... ...... .+...+...|+.+....++..+.+.. +..+...+.. ++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 1 122 345666666666653321 111122 23333556788888888888776642 2233333333 444678
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHH--HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 008727 415 RLREAYGVIQEMKRKGLDPDVSFY--NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492 (556)
Q Consensus 415 ~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 492 (556)
+.+.+..+++.+... ..|....- .++.-+|+..|+.....+++..+.+.. ..+..-...+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888888888764 12222211 234456788889888888999888642 33444334444455567777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccCCH-HHHHHHHHHhhh
Q 008727 493 FHNMLEKGVAPDATTYTSLLEGLCQETNL-QAAFEVFNKSVN 533 (556)
Q Consensus 493 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 533 (556)
++.+.+.+ .|....-..+.-+....|.. .++++++..+..
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 77665543 33333333333444445443 577778877753
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.01 E-value=8.8 Score=29.46 Aligned_cols=69 Identities=6% Similarity=0.070 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHccCCH---HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 468 GNLKTYNILISKFSEVGEI---EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
|+..+--.+.+++.+..+. .+++.+++.....+..-.....-.+.-++.+.|++++|.++.+.+++..+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 3333333344444444433 23444444444332111222333344455555555555555555555443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=87.00 E-value=4.3 Score=30.65 Aligned_cols=45 Identities=9% Similarity=0.163 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
..+-++.+...++.|++....+.+.+|-+.+++..|.++|+-.+.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333344444444455555555555555555555555555555444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.68 E-value=8.5 Score=42.01 Aligned_cols=144 Identities=11% Similarity=0.064 Sum_probs=84.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------------
Q 008727 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL------------------ 431 (556)
Q Consensus 370 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------------ 431 (556)
.++..+.+.+..+.+.++..-... +...--.+..+|...|++++|.+.|++... |+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 345556666666666554433222 333334455566777777777777765321 11
Q ss_pred -----CCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 008727 432 -----DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN----LKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502 (556)
Q Consensus 432 -----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 502 (556)
..-..-|..++..+.+.+.++.+.++-....+..-..+ ...|..+.+++...|++++|...+-.+.+...+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 00123356677777777777777777766665421111 125677777788888888888877777665433
Q ss_pred CCHhhHHHHHHHHHccCCH
Q 008727 503 PDATTYTSLLEGLCQETNL 521 (556)
Q Consensus 503 p~~~~~~~l~~~~~~~g~~ 521 (556)
...+..++..++..|..
T Consensus 971 --~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 971 --KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp --HHHHHHHHHHHHHHCCH
T ss_pred --HHHHHHHHHHHHhCCCh
Confidence 45566666666655543
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=84.80 E-value=3.4 Score=36.35 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=7.7
Q ss_pred cCChhHHHHHHHHHHHcCC
Q 008727 343 SIDPRSAIVFFNFMIEKGR 361 (556)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~ 361 (556)
.++.....++++.+.+.|.
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGA 210 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTC
T ss_pred ccccchHHHHHHHHHHcCC
Confidence 3333333344444444443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.77 E-value=11 Score=28.52 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008727 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 383 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 428 (556)
+..+-++.+...+..|++.+..+.+++|-+.+++..|.++|+-.+.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555555555554443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.05 E-value=12 Score=28.40 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=12.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhCC
Q 008727 510 SLLEGLCQETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 535 (556)
.+.-++.+.|++++|.++.+.+++..
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 33344444444444444444444433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=83.99 E-value=12 Score=28.32 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=39.6
Q ss_pred CCCHhHHHHHHHHHhhcCC---hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 432 DPDVSFYNSLMEACCREDL---LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 432 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.|+..+-.....++.+..+ ..+++.+++++.+.+-.-....+-.|.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4555555555555555543 3456666766666541112344455666777777777777777777643
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.82 E-value=12 Score=29.66 Aligned_cols=62 Identities=6% Similarity=-0.120 Sum_probs=36.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCCCh-------HhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008727 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNC-EDIGP-------EICNSLLAVLASDGYIDNALKMFDEMSH 182 (556)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (556)
.+..-++.+...|.++.|+-+.+.+.... .++++ .++..+.+++...|++..|...|++..+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34444666677777777777776654321 12221 2455666666777777777777776543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 556 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.55 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.5 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.12 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.12 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.11 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.1 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.08 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.07 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.94 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.91 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.87 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.85 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.74 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.54 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.43 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.42 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.36 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.35 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.35 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.33 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.24 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.21 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.17 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.16 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.15 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.11 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.1 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.09 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.93 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.91 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.88 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.8 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.7 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.69 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.69 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.64 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.64 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.62 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.61 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.55 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.54 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.46 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.44 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.43 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.42 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.31 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.13 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.0 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.51 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.45 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.24 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.03 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.87 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.95 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.22 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.5 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.01 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.9 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 85.01 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.4e-20 Score=175.11 Aligned_cols=381 Identities=12% Similarity=0.047 Sum_probs=208.7
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 170 (556)
...+.+.|++++|.+.++++.+.. |-+...+..+...|.+.|++++|+..|+++.+..+. +..+|..+..+|.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccc
Confidence 445567788888888888877654 446677777777888888888888888887766433 567777788888888888
Q ss_pred hHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHH
Q 008727 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250 (556)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 250 (556)
++|.+.+....+.... +..............+....+.......... ..................+....+...+.
T Consensus 84 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cccccccccccccccc-ccccccccccccccccccccccccccccccc---ccccccccccccccccccchhhhhHHHHH
Confidence 8888888777765422 2333333333444445555554444444433 22223333444555556666666666665
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 008727 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330 (556)
Q Consensus 251 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (556)
...... +-+...+..+...+...|++++|...+++..+.... +...+..+...+...|++
T Consensus 160 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~------------------ 219 (388)
T d1w3ba_ 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIF------------------ 219 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCT------------------
T ss_pred HhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccH------------------
Confidence 555432 113445555555566666666666666555443211 112223333333333333
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHH
Q 008727 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410 (556)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 410 (556)
++|+..+......+ ..+...+..+...+.+.|++++|...|++..+..+. +..++..+...+
T Consensus 220 ----------------~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 281 (388)
T d1w3ba_ 220 ----------------DRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANAL 281 (388)
T ss_dssp ----------------THHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 33333333333322 123344444555555566666666666655554433 444555555566
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 008727 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490 (556)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 490 (556)
...|++++|.+.++....... .+...+..+...+...|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|.
T Consensus 282 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~ 359 (388)
T d1w3ba_ 282 KEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHcCCHHHHHHHHHhhhccCC-ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666655554422 244555555555556666666666666555432 223445555555566666666666
Q ss_pred HHHHHHHHCCCCC-CHhhHHHHHHHHHccC
Q 008727 491 RLFHNMLEKGVAP-DATTYTSLLEGLCQET 519 (556)
Q Consensus 491 ~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g 519 (556)
+.|++.++. .| +...|..+...|.+.|
T Consensus 360 ~~~~~al~l--~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 360 MHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 666655533 33 2444555555555444
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=8.2e-20 Score=173.82 Aligned_cols=382 Identities=13% Similarity=0.037 Sum_probs=256.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCc
Q 008727 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204 (556)
Q Consensus 125 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 204 (556)
+...+.+.|++++|++.++++.+..+. ++.++..+..+|.+.|++++|.+.|++..+.+. -+..++..+...+...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcc
Confidence 344556667777777777777665332 566677777777777777777777777666432 234556666666666666
Q ss_pred HHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008727 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284 (556)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 284 (556)
+++|++.+...... .+................+....+............. ...............+....+...+
T Consensus 83 ~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 83 LQEAIEHYRHALRL---KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred cccccccccccccc---ccccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHH
Confidence 66666666666654 2232333333333333344444444433333322111 2222333333344444444444444
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 008727 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT 364 (556)
Q Consensus 285 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 364 (556)
......... +...+..+...+.. .++.++|...+++..+.. +-+
T Consensus 159 ~~~~~~~~~-~~~~~~~l~~~~~~----------------------------------~~~~~~A~~~~~~al~~~-p~~ 202 (388)
T d1w3ba_ 159 LKAIETQPN-FAVAWSNLGCVFNA----------------------------------QGEIWLAIHHFEKAVTLD-PNF 202 (388)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHT----------------------------------TTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHhhccCcc-hhHHHHhhcccccc----------------------------------cCcHHHHHHHHHHHHHhC-ccc
Confidence 443332111 11222223333333 455556666665555543 224
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 444 (556)
...+..+...+...|++++|...++.....+.. +...+..+...+.+.|++++|+..|++..+.... +..++..+...
T Consensus 203 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 280 (388)
T d1w3ba_ 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANA 280 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHH
T ss_pred HHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 667788888999999999999999998886554 6678888999999999999999999999987543 57789999999
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCCHHH
Q 008727 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETNLQA 523 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 523 (556)
+...|++++|.+.++...... +.+...+..+...+...|++++|++.|++.++. .| +..++..+...|.+.|++++
T Consensus 281 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~ 357 (388)
T d1w3ba_ 281 LKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998874 677888999999999999999999999999865 34 46678889999999999999
Q ss_pred HHHHHHHhhhCCCcccHHHHHHHHHHHhhhh
Q 008727 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRV 554 (556)
Q Consensus 524 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 554 (556)
|.+.|++.++.++. ....+..+-..|-+.|
T Consensus 358 A~~~~~~al~l~P~-~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 358 ALMHYKEAIRISPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 99999999988765 3445666666665543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.2e-12 Score=117.37 Aligned_cols=97 Identities=12% Similarity=0.049 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 444 (556)
...+..+...+...|++++|...++......+. +...|..+...|...|++++|.+.+++..+.... +..+|..+..+
T Consensus 172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~ 249 (323)
T d1fcha_ 172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGIS 249 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHH
Confidence 334444444445555555555555554443322 3444444555555555555555555554443211 23344445555
Q ss_pred HhhcCChhhHHHHHHHHHH
Q 008727 445 CCREDLLRPAKKLWDQMFA 463 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~ 463 (556)
|.+.|++++|++.|++.++
T Consensus 250 ~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 250 CINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5555555555555554443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=6.3e-12 Score=115.37 Aligned_cols=230 Identities=7% Similarity=-0.032 Sum_probs=156.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 008727 90 ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY 169 (556)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 169 (556)
....+.+.|++++|...|+.+++.. |-+...|..+...+...|++++|...|++..+..+. +...|..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccc
Confidence 4555667888888888888888765 456777888888888888888888888887766443 66778888888888888
Q ss_pred HhHHHHHHHHHHhCCCccCh--------------hhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHH
Q 008727 170 IDNALKMFDEMSHRGVEFST--------------IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235 (556)
Q Consensus 170 ~~~a~~~~~~m~~~~~~~~~--------------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 235 (556)
+++|.+.++........... ......+..+...+.+.++.+.+...... .....+..++..+...
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL-DPTSIDPDVQCGLGVL 181 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH-STTSCCHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH-hhcccccccchhhHHH
Confidence 88888888887664311000 00111222334456677777777777665 2223335566677777
Q ss_pred HhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 008727 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315 (556)
Q Consensus 236 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 315 (556)
+...|++++|...|++...... -+...|..+...+...|++++|++.|++..+.... +...+..+..+|.+.|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHHH
Confidence 8888888888888887765532 24667777777888888888888888877764211 334566677777777777777
Q ss_pred HHHHHHHHc
Q 008727 316 KELGEVIVS 324 (556)
Q Consensus 316 ~~~~~~~~~ 324 (556)
.+.|+..++
T Consensus 260 ~~~~~~al~ 268 (323)
T d1fcha_ 260 VEHFLEALN 268 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=3.4e-08 Score=89.02 Aligned_cols=144 Identities=8% Similarity=0.027 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC-ChHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK-NTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 163 (556)
..|+.+...+.+.+.+++|.+.++.+++.. |-+...|+.....+...| ++++|+..++...+..++ +..+|+.+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence 445555566666777777777777777765 455666676666666654 467777777777665444 66677777777
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHH
Q 008727 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234 (556)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 234 (556)
+.+.|++++|++.++.+.+... -+...|..+...+...|++++|++.++.+.+. .|.+...|+.+..
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~ 188 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYF 188 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHH
Confidence 7777777777777777766532 24455666666666666666666666666654 4444455544433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1.8e-08 Score=90.91 Aligned_cols=201 Identities=8% Similarity=0.000 Sum_probs=147.3
Q ss_pred cChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHH
Q 008727 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSR-QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140 (556)
Q Consensus 62 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 140 (556)
...+.|+..++.+.... +-+...|+....++...+ ++++|...++...+.. +-+..+|..+...+.+.|++++|++
T Consensus 57 e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~~eAl~ 133 (315)
T d2h6fa1 57 ERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELE 133 (315)
T ss_dssp CCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred CchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhccHHHHHH
Confidence 35688999999887653 245677888888887765 5899999999988876 5678899999999999999999999
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhC------cHHHHHHHHHH
Q 008727 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA------KLGQVLSMLDE 214 (556)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g------~~~~a~~~~~~ 214 (556)
.++++.+..+. +..+|+.+...+.+.|++++|++.++.+.+.++ -+...|+.+...+.+.+ .+++|++.+..
T Consensus 134 ~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~ 211 (315)
T d2h6fa1 134 FIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 211 (315)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchhhhhHHhHHHHHH
Confidence 99999887554 788999999999999999999999999988753 25556766555554443 36778888888
Q ss_pred HHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHH
Q 008727 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK-PDFIAYRIVAEEF 271 (556)
Q Consensus 215 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~ 271 (556)
.... .|.+...|+.+...+.. ...+++.+.++...+.... .+...+..+...|
T Consensus 212 al~~---~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 212 MIKL---VPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHH---STTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHh---CCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 7766 66677777766555544 3356677777666543222 2344444555444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=1.7e-08 Score=90.97 Aligned_cols=187 Identities=6% Similarity=-0.029 Sum_probs=124.8
Q ss_pred ChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHH
Q 008727 99 QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFD 178 (556)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 178 (556)
..+++..+|+...+...+.+...+...+....+.|+.+.|..+|+.+....+.....+|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34667777777776554556667777777777888888888888887765444334577888888888888888888888
Q ss_pred HHHhCCCccChhhHHHHHHH-HHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCC-
Q 008727 179 EMSHRGVEFSTIGFGVFIWK-FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE- 256 (556)
Q Consensus 179 ~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~- 256 (556)
...+.+.. +...|...... +...|+.+.|..+|+.+... .|.+...|...++...+.|+++.|..+|++.....
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~---~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 87765432 22333322222 23356777777777777765 55566777777777777778888877877766542
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 257 CKPD--FIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 257 ~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
..|+ ...|...+..-...|+.+.+.++++++.+
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2332 34566666666666777777777766654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=4.1e-08 Score=90.49 Aligned_cols=265 Identities=12% Similarity=0.037 Sum_probs=117.7
Q ss_pred HHHhccCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHH
Q 008727 234 HGFCKGKRVEEAFKVLDELRIRECKPD----FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA-PR----TNDYREFIL 304 (556)
Q Consensus 234 ~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~ 304 (556)
..+...|++++|++++++..+.....+ ...+..+...+...|++++|...+++..+.... ++ ...+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 344455555555555555544311111 123444455555566666666666554432110 11 112333344
Q ss_pred HHHhcCCHHHHHHHHHHHHc----CCCCCC--HH-HHHHHH-HHHhcCChhHHHHHHHHHHHcCCC----CCHHHHHHHH
Q 008727 305 GLIVERRICEAKELGEVIVS----GKFTID--DD-VLNALI-GSVSSIDPRSAIVFFNFMIEKGRV----PTLSTLSNLS 372 (556)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~-~~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll 372 (556)
.+...|++..+...+..... ...... .. .+..+- ..+..|+++.+...+......... .....+....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 55566666666665554432 111111 11 111111 123345666666655555433211 1123333344
Q ss_pred HHHHhcCChHHHHHHHHHHHhC----CCCc--cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHH
Q 008727 373 KNLCKRNKSDELVEVYKVLSAN----DYFT--DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD---VSFYNSLME 443 (556)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~ 443 (556)
..+...++...+...+...... +..+ ....+......+...|+.++|...++...+.....+ ...+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 4455555555555555543321 1110 011233344445555566666655555443221111 223344555
Q ss_pred HHhhcCChhhHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 444 ACCREDLLRPAKKLWDQMFAS----GCSGN-LKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
++...|++++|...++++... +..|+ ...+..+..+|...|++++|.+.+++..+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555556666666655555421 22222 23445555555566666666666655554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=2.7e-08 Score=89.66 Aligned_cols=188 Identities=12% Similarity=0.097 Sum_probs=144.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 008727 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424 (556)
Q Consensus 345 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 424 (556)
..++|..+|++..+...+.+...+...+....+.|+.+.|..+|+.+.+..+.....+|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34677788888776555556667777788888999999999999998876554345578888999999999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHH-HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CC
Q 008727 425 EMKRKGLDPDVSFYNSLMEA-CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-VA 502 (556)
Q Consensus 425 ~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 502 (556)
++.+.+.. +...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+.+.|+++.|..+|++..... ..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 98887543 33344333332 344688999999999999863 5667889999999999999999999999988763 34
Q ss_pred CC--HhhHHHHHHHHHccCCHHHHHHHHHHhhhC
Q 008727 503 PD--ATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (556)
Q Consensus 503 p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 534 (556)
|+ ...|...+.--...|+.+.+..+.+++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 43 346777777767889999999999987653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=2.3e-07 Score=85.27 Aligned_cols=271 Identities=10% Similarity=-0.005 Sum_probs=131.1
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCC----hHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC----c-cChhhHHHHHH
Q 008727 127 PSLIQGKNTQKAFSVFNEVKFNCEDIG----PEICNSLLAVLASDGYIDNALKMFDEMSHRGV----E-FSTIGFGVFIW 197 (556)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~-~~~~~~~~li~ 197 (556)
..+...|++++|++.+++.....+..+ ..+++.+..++...|++++|.+.|++..+... . .....+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 344455555555555555544322111 12445555556666666666666655443210 0 01123333444
Q ss_pred HHHhhCcHHHHHHHHHHHHhcc-----CCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC----CCCCCHHHHHHHH
Q 008727 198 KFCENAKLGQVLSMLDEVRKRE-----NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR----ECKPDFIAYRIVA 268 (556)
Q Consensus 198 ~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~~~~~~~ll 268 (556)
.+...|++..+...+....... ...+.....+..+...+...|+++.+...+...... +.......+....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 4555566666665555543210 011111223344556666677777777776665432 1122234444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC--CCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 008727 269 EEFKLMGSVFEREVVLKKKRKLG--VAPRT----NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342 (556)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (556)
..+...++...+...+.+..... ..... ..+......+...|+.+.|...+..........+
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------ 247 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN------------ 247 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccc------------
Confidence 55666666666666665543321 00000 1122223334444555555444444332211110
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCcc-HhhHHHHHHHHHhcCCHH
Q 008727 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA----NDYFTD-MESYNVMVSFLCTSGRLR 417 (556)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~~~~~ 417 (556)
......+..+...+...|++++|...++.... .+..|+ ...+..+...|...|+++
T Consensus 248 -------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 308 (366)
T d1hz4a_ 248 -------------------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 308 (366)
T ss_dssp -------------------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred -------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHH
Confidence 11123334455666777777777777766542 232222 335666667777777777
Q ss_pred HHHHHHHHHHH
Q 008727 418 EAYGVIQEMKR 428 (556)
Q Consensus 418 ~a~~~~~~m~~ 428 (556)
+|.+.+++..+
T Consensus 309 ~A~~~l~~Al~ 319 (366)
T d1hz4a_ 309 DAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=3.5e-08 Score=86.47 Aligned_cols=218 Identities=8% Similarity=-0.108 Sum_probs=137.7
Q ss_pred hHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHH
Q 008727 65 SLALGFFNWASQQPNFTH--SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVF 142 (556)
Q Consensus 65 ~~a~~~f~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 142 (556)
+.|+..+..........+ ....|..+...+.+.|++++|.+.|++.++.. |-+..+|..+..++.+.|++++|++.|
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 445555565554443332 23466677788889999999999999998875 567889999999999999999999999
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCC
Q 008727 143 NEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222 (556)
Q Consensus 143 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 222 (556)
+++.+..+. +..++..+..++...|++++|.+.|+...+... .+......+...+.+.+..+.+..+....... ...
T Consensus 95 ~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 171 (259)
T d1xnfa_ 95 DSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKE 171 (259)
T ss_dssp HHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCC
T ss_pred hHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-chh
Confidence 999887544 677899999999999999999999999887642 23333333444555566666665555555544 211
Q ss_pred CCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE--CKPD-FIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 223 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
+. .++ ++..+.................... ..|+ ..+|..+...+...|++++|.+.|+.....
T Consensus 172 ~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 172 QW---GWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp ST---HHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hh---hhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 11 122 2233322222222111111111110 0111 234555666677777777777777776653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=3.8e-07 Score=79.60 Aligned_cols=220 Identities=15% Similarity=-0.055 Sum_probs=147.5
Q ss_pred CHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008727 311 RICEAKELGEVIVSGKFTIDD----DVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVE 386 (556)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 386 (556)
+.+.+..-++++.......+. ..++........|++++|+..|++.++... -+..++..+..++.+.|++++|++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhh
Confidence 456677777777765432222 234444555668999999999999988653 367888999999999999999999
Q ss_pred HHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCC
Q 008727 387 VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466 (556)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 466 (556)
.|+++.+..+. +..++..+..+|...|++++|...++...+.... +......+..++.+.+..+.+..+........
T Consensus 93 ~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 169 (259)
T d1xnfa_ 93 AFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 169 (259)
T ss_dssp HHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-
T ss_pred hhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc-
Confidence 99999987654 5668888999999999999999999999887432 44444444455556666566666656555532
Q ss_pred CCCHHHHHHHHHHHHccCC----HHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcc
Q 008727 467 SGNLKTYNILISKFSEVGE----IEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538 (556)
Q Consensus 467 ~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 538 (556)
++...++ ++..+..... .+.+...+...... .| ...+|..+...|...|++++|.+.|++.+..++..
T Consensus 170 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 170 -KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242 (259)
T ss_dssp -CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred -hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 2222222 2223322222 22222222221111 12 13456678889999999999999999999887653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.87 E-value=1.9e-08 Score=92.01 Aligned_cols=227 Identities=7% Similarity=-0.046 Sum_probs=152.9
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH---HhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHH
Q 008727 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGS---VSSIDPRSAIVFFNFMIEKGRVPTLSTL-SNLSKNLCKRNKSDEL 384 (556)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~a 384 (556)
.|.+++|..+++.+++..+. +...|...... ...++.++|+..+....+.... +...+ ......+...+..+.|
T Consensus 86 ~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHH
Confidence 34456666666666655433 33333333222 2234677888888888776433 33333 3444667778889999
Q ss_pred HHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 008727 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (556)
...++.+.+.++. +...|+.+...+.+.|++++|...+....+. .|+ .......+...+..+++...+......
T Consensus 164 l~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 164 LAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 9999988887765 7778888888888888888776665544432 111 122334456667788888888888776
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHH
Q 008727 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544 (556)
Q Consensus 465 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 544 (556)
. +++...+..+...+...|+.++|.+.+.+...... -+...|..+...+.+.|++++|++++++.++.+|. ....+.
T Consensus 238 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y~~ 314 (334)
T d1dcea1 238 R-AEPLFRCELSVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLD 314 (334)
T ss_dssp C-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHHHH
T ss_pred C-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc-cHHHHH
Confidence 4 45566677777888888999999999988875522 14566777888889999999999999999888763 334444
Q ss_pred HH
Q 008727 545 TF 546 (556)
Q Consensus 545 ~l 546 (556)
.|
T Consensus 315 ~L 316 (334)
T d1dcea1 315 DL 316 (334)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.85 E-value=2.4e-08 Score=91.35 Aligned_cols=85 Identities=12% Similarity=-0.059 Sum_probs=41.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHH
Q 008727 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456 (556)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 456 (556)
..+..+.+...+.......+. +...+..+...+...++.++|...+.+..+..+. +..+|..+..++...|+.++|.+
T Consensus 220 ~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~ 297 (334)
T d1dcea1 220 FTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQ 297 (334)
T ss_dssp HHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHH
T ss_pred HhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHH
Confidence 334444444444444443322 3333444444444555555555555554443211 33445555555555555555555
Q ss_pred HHHHHHH
Q 008727 457 LWDQMFA 463 (556)
Q Consensus 457 ~~~~~~~ 463 (556)
.++.+.+
T Consensus 298 ~~~~ai~ 304 (334)
T d1dcea1 298 YFSTLKA 304 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555555
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=5.7e-07 Score=74.06 Aligned_cols=136 Identities=9% Similarity=-0.008 Sum_probs=68.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 008727 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489 (556)
Q Consensus 410 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 489 (556)
+...|++++|++.|.++ ..|+..+|..+..+|...|++++|++.|++.++.+ +.+...|..+..+|.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHH
Confidence 34455555555555432 12344555555555555555555555555555543 33444555555555555555555
Q ss_pred HHHHHHHHHCCC------------C--CC-HhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHH
Q 008727 490 LRLFHNMLEKGV------------A--PD-ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550 (556)
Q Consensus 490 ~~~~~~m~~~g~------------~--p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 550 (556)
.+.|++...... . ++ ..++..+..++.+.|++++|.+.+++..+..+.+....+...+..+
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~ 165 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV 165 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 555555543200 0 00 1223344455556666666666666666555555555554444443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=4e-06 Score=68.80 Aligned_cols=90 Identities=12% Similarity=0.004 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhc
Q 008727 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413 (556)
Q Consensus 334 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 413 (556)
|+..+..+..++++.|++.|.++ ..|+..++..+..+|...|++++|++.|++..+.++. +...|..+..+|.+.
T Consensus 9 ~~~g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~ 83 (192)
T d1hh8a_ 9 WNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQT 83 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhh
Confidence 34444444555555555555432 2334445555555555555555555555555554433 444555555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 008727 414 GRLREAYGVIQEMKR 428 (556)
Q Consensus 414 ~~~~~a~~~~~~m~~ 428 (556)
|++++|++.|++...
T Consensus 84 g~~~~A~~~~~kAl~ 98 (192)
T d1hh8a_ 84 EKYDLAIKDLKEALI 98 (192)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 555555555555443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.43 E-value=4.7e-06 Score=73.80 Aligned_cols=179 Identities=9% Similarity=-0.000 Sum_probs=101.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC----CCCc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHhHHHHH
Q 008727 372 SKNLCKRNKSDELVEVYKVLSAN----DYFT-DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-----PDVSFYNSL 441 (556)
Q Consensus 372 l~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~l 441 (556)
...|...|++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|.+.+++..+.... ....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 34566777777777777765542 1111 2246777777777777777777777765442111 113345555
Q ss_pred HHHHh-hcCChhhHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH------hhHH
Q 008727 442 MEACC-REDLLRPAKKLWDQMFAS----GCSG-NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA------TTYT 509 (556)
Q Consensus 442 l~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~ 509 (556)
...|. ..|++++|.+.+++..+. +-.+ -..++..+...|...|++++|.+.|+++......... ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 55553 357777887777776532 1111 1344666777777788888888888777654211111 1123
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhCCCccc----HHHHHHHHHHH
Q 008727 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLA----RSILSTFMISL 550 (556)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~ 550 (556)
..+..+...|+++.|.+.+++..+.++... ..++..++.++
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~ 248 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV 248 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHH
Confidence 344455667778888887777766654322 22445555544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=4.2e-06 Score=74.06 Aligned_cols=129 Identities=9% Similarity=-0.081 Sum_probs=59.2
Q ss_pred HHHHHcCCChHHHHHHHHHHHhC----CCCC-ChHhHHHHHHHHHhcCCHhHHHHHHHHHHhC----C-CccChhhHHHH
Q 008727 126 IPSLIQGKNTQKAFSVFNEVKFN----CEDI-GPEICNSLLAVLASDGYIDNALKMFDEMSHR----G-VEFSTIGFGVF 195 (556)
Q Consensus 126 i~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~~~~~~~~~l 195 (556)
...|...|++++|.+.|.+..+. +.++ -..+|+.+..+|.+.|++++|.+.++...+. | ......++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44455556666666666555331 1111 1235566666666666666666666654331 1 00011223333
Q ss_pred HHHHHh-hCcHHHHHHHHHHHHhc---cCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 008727 196 IWKFCE-NAKLGQVLSMLDEVRKR---ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254 (556)
Q Consensus 196 i~~~~~-~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 254 (556)
...|.. .|++++|++.++..... .+..+....++..+...+...|++++|.+.|++...
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 333322 35555555555554321 011111123344455555555555555555555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=6.3e-06 Score=61.29 Aligned_cols=88 Identities=14% Similarity=0.080 Sum_probs=47.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 008727 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488 (556)
Q Consensus 409 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 488 (556)
.+.+.|++++|+..|++.++.... +...|..+..+|...|++++|+..++...+.+ +.+...|..+..++...|++++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHH
Confidence 344555555555555555554322 44455555555555555555555555555543 3445555555555555555555
Q ss_pred HHHHHHHHHH
Q 008727 489 ALRLFHNMLE 498 (556)
Q Consensus 489 A~~~~~~m~~ 498 (556)
|+..|++..+
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 5555555553
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=7.1e-06 Score=61.02 Aligned_cols=94 Identities=10% Similarity=0.077 Sum_probs=60.9
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCH
Q 008727 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521 (556)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 521 (556)
...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++.++.+. .+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccCH
Confidence 445666677777777777766653 44556666666777777777777777777665532 2556666666666777777
Q ss_pred HHHHHHHHHhhhCCCc
Q 008727 522 QAAFEVFNKSVNHDVM 537 (556)
Q Consensus 522 ~~a~~~~~~m~~~~~~ 537 (556)
++|+..+++.++.++.
T Consensus 88 ~~A~~~~~~a~~~~p~ 103 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEAN 103 (117)
T ss_dssp HHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhCCC
Confidence 7777777776665543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=8.1e-06 Score=64.70 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=67.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 008727 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485 (556)
Q Consensus 406 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 485 (556)
....|.+.|++++|+..|++..+.... +...|..+..+|...|++++|.+.|+++++.. +-+...|..+..+|...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 344566777788888888777776543 56677777777777888888888888777754 4455677777777888888
Q ss_pred HHHHHHHHHHHHHC
Q 008727 486 IEGALRLFHNMLEK 499 (556)
Q Consensus 486 ~~~A~~~~~~m~~~ 499 (556)
+++|.+.+++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 88888888777765
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=9.2e-06 Score=64.37 Aligned_cols=103 Identities=8% Similarity=-0.021 Sum_probs=85.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCCh
Q 008727 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451 (556)
Q Consensus 372 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 451 (556)
...|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|...|+...+.... +...|..+..+|...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCH
Confidence 35678999999999999999987765 7889999999999999999999999999987543 668899999999999999
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHH
Q 008727 452 RPAKKLWDQMFASGCSGNLKTYNILI 477 (556)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li 477 (556)
++|...+++..+.. +-+...+..+.
T Consensus 95 ~eA~~~~~~a~~~~-p~~~~~~~~l~ 119 (159)
T d1a17a_ 95 RAALRDYETVVKVK-PHDKDAKMKYQ 119 (159)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 99999999999864 33344444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.35 E-value=1.8e-06 Score=71.88 Aligned_cols=99 Identities=11% Similarity=0.002 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008727 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442 (556)
Q Consensus 363 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 442 (556)
|+...+......+.+.|++++|+..|++..+..+. +...|+.+..+|.+.|++++|+..|+...+.... +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 56666777777788888888888888887776554 6777888888888888888888888887765332 466777788
Q ss_pred HHHhhcCChhhHHHHHHHHHH
Q 008727 443 EACCREDLLRPAKKLWDQMFA 463 (556)
Q Consensus 443 ~~~~~~~~~~~a~~~~~~~~~ 463 (556)
.+|...|++++|...|+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888887765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.33 E-value=3.5e-06 Score=70.00 Aligned_cols=100 Identities=9% Similarity=-0.017 Sum_probs=87.3
Q ss_pred ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 008727 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477 (556)
Q Consensus 398 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 477 (556)
|+...+......|.+.|++++|+..|++..+..+. +...|..+..+|.+.|++++|+..|+.+.+.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 66777778888999999999999999999887544 78889999999999999999999999998753 33577899999
Q ss_pred HHHHccCCHHHHHHHHHHHHHC
Q 008727 478 SKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.+|...|++++|+..|+++.+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=2.2e-06 Score=64.05 Aligned_cols=94 Identities=14% Similarity=0.077 Sum_probs=42.7
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH---HHHHHHHHHHHHCCCCCCH-hhHHHHHHHHH
Q 008727 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI---EGALRLFHNMLEKGVAPDA-TTYTSLLEGLC 516 (556)
Q Consensus 441 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~ 516 (556)
+++.+...+++++|.+.|+...+.+ +.+..++..+..++.+.++. ++|+++++++...+..|+. .+|..+..+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 3444444455555555555555443 33444444444444443322 2355555554433222221 23444444555
Q ss_pred ccCCHHHHHHHHHHhhhCC
Q 008727 517 QETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 517 ~~g~~~~a~~~~~~m~~~~ 535 (556)
+.|++++|++.|+++++.+
T Consensus 84 ~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHhC
Confidence 5555555555555555444
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.21 E-value=7.4e-06 Score=60.31 Aligned_cols=89 Identities=11% Similarity=-0.022 Sum_probs=48.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 008727 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485 (556)
Q Consensus 406 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 485 (556)
+...+.+.|++++|+..|++..+.... +..+|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 334455555666666666655554322 45555555555555566666666665555543 3345555555555555556
Q ss_pred HHHHHHHHHHH
Q 008727 486 IEGALRLFHNM 496 (556)
Q Consensus 486 ~~~A~~~~~~m 496 (556)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66555555553
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.17 E-value=0.0019 Score=56.92 Aligned_cols=135 Identities=9% Similarity=0.018 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
|..--..+.+.|-+.|.++.|..++..+. -|..++..+.+.++++.|.+++.+.. +..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHH
Confidence 33334455666667777777777776432 24556666677777777777665441 5567777777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccC
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 240 (556)
.+.+......+ .+.......+......++..|-..|.+++...+++..... ...+...++.++..|++.+
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~---~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL---ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---TTCCHHHHHHHHHHHHTTC
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC---CccchHHHHHHHHHHHHhC
Confidence 77766555433 2222223334444556667777777777777777766532 3444556666777777654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.16 E-value=0.0017 Score=55.81 Aligned_cols=97 Identities=14% Similarity=0.046 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCChHhHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ----GKNTQKAFSVFNEVKFNCEDIGPEICN 158 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (556)
|+..+..+...+-+.+++.+|.+.|++..+.| +...+..|...|.. ..+...|...+......+ ++....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 35556666666667778888888887777766 45555556666654 456777777777766654 344444
Q ss_pred HHHHHHHh----cCCHhHHHHHHHHHHhCCC
Q 008727 159 SLLAVLAS----DGYIDNALKMFDEMSHRGV 185 (556)
Q Consensus 159 ~li~~~~~----~g~~~~a~~~~~~m~~~~~ 185 (556)
.+...+.. ..+.+.|...++...+.|.
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~ 105 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY 105 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh
Confidence 44444433 3456667777777666553
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=0.0021 Score=56.64 Aligned_cols=110 Identities=10% Similarity=0.030 Sum_probs=41.5
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHH
Q 008727 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235 (556)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 235 (556)
-...+.+.|.+.|.++.|..+|..+. -|..++..+.+.+++..|.+.+.... +..+|..+...
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~--------~~~~~k~~~~~ 78 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFA 78 (336)
T ss_dssp -------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC--------CHHHHHHHHHH
Confidence 33444555555555555555555332 23344444555555555544443321 12344444444
Q ss_pred HhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287 (556)
Q Consensus 236 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 287 (556)
+.+......| .+...+...+......++..|-..|.+++...+++..
T Consensus 79 l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~ 125 (336)
T d1b89a_ 79 CVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAA 125 (336)
T ss_dssp HHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4444333222 1111222223333344445555555555555544443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.11 E-value=0.0021 Score=55.08 Aligned_cols=160 Identities=9% Similarity=-0.008 Sum_probs=97.1
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCccChhhHH
Q 008727 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS----DGYIDNALKMFDEMSHRGVEFSTIGFG 193 (556)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~ 193 (556)
|+..+..|...+.+.+++++|++.|++..+.| +..++..|...|.. ..+...|...+......+.. ....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~---~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS---NGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc---chhh
Confidence 45566777777888899999999999998876 66777777777776 56788888888888776632 2222
Q ss_pred HHHHHHH----hhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHH----hccCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 008727 194 VFIWKFC----ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF----CKGKRVEEAFKVLDELRIRECKPDFIAYR 265 (556)
Q Consensus 194 ~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 265 (556)
.+...+. ...+.+.|...++..... +. + .....+...+ ........+...+......+ +...+.
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-g~--~--~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 146 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDL-KY--A--EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 146 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TC--H--HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhh-hh--h--hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhh
Confidence 3332222 246777888888777665 22 1 1111222222 23445666667766655542 555566
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 008727 266 IVAEEFKL----MGSVFEREVVLKKKRKLG 291 (556)
Q Consensus 266 ~ll~~~~~----~~~~~~a~~~~~~~~~~~ 291 (556)
.+...+.. ..+...+...++...+.|
T Consensus 147 ~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g 176 (265)
T d1ouva_ 147 ILGSLYDAGRGTPKDLKKALASYDKACDLK 176 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhhhhhccCCCcccccccchhhhhcccccc
Confidence 66555553 234455555555544433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=1.2e-05 Score=59.86 Aligned_cols=92 Identities=11% Similarity=0.054 Sum_probs=36.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC---HhHHHHHHHHHHhCCCccCh-hhHHHHHHHHH
Q 008727 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY---IDNALKMFDEMSHRGVEFST-IGFGVFIWKFC 200 (556)
Q Consensus 125 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~ 200 (556)
++..+...+++++|++.|+.....++. ++.++..+..++.+.++ +++|+++|+++...+..|+. .++..+..+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 333444444444444444444443322 44444444444443222 22344444444433322221 13333333444
Q ss_pred hhCcHHHHHHHHHHHHh
Q 008727 201 ENAKLGQVLSMLDEVRK 217 (556)
Q Consensus 201 ~~g~~~~a~~~~~~~~~ 217 (556)
+.|++++|++.|+.+.+
T Consensus 84 ~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 44444444444444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.09 E-value=1.4e-05 Score=58.75 Aligned_cols=88 Identities=9% Similarity=0.038 Sum_probs=48.4
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 170 (556)
...+.+.|++++|...|++.++.. |-+...|..+...+.+.|++++|+..|++..+..+. +..+|..+...|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCH
Confidence 334455566666666666555543 334555555555555556666666666555554322 455555555555555555
Q ss_pred hHHHHHHHHH
Q 008727 171 DNALKMFDEM 180 (556)
Q Consensus 171 ~~a~~~~~~m 180 (556)
++|.+.|++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=7.2e-05 Score=56.35 Aligned_cols=57 Identities=5% Similarity=0.065 Sum_probs=27.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 008727 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463 (556)
Q Consensus 406 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 463 (556)
+...+.+.|++++|+..|.+.++.+.. +...|..+..+|.+.|++++|.+.++++++
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 344444455555555555554444322 344444445555555555555555554443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=0.00026 Score=56.27 Aligned_cols=62 Identities=16% Similarity=0.038 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+|+.+..+|.+.|++++|...++..++.. +.++..|..+..+|...|++++|...|++..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34555556666666666666666666543 335555666666666666666666666666543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=0.00026 Score=56.25 Aligned_cols=112 Identities=10% Similarity=-0.035 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCc--------------cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008727 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFT--------------DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433 (556)
Q Consensus 368 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 433 (556)
+......+.+.|++++|+..|.+..+..... -..+|+.+..+|.+.|++++|+..++..++..+.
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~- 94 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN- 94 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc-
Confidence 3444556777888888888887766532110 0134566677777788888888888877776433
Q ss_pred CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
+..+|..+..+|...|++++|...|++..+.. +-|......+-.+..
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ 141 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 66777777788888888888888888877753 224444444444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=0.00015 Score=54.43 Aligned_cols=95 Identities=18% Similarity=0.253 Sum_probs=49.9
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC-----HhhHHHHH
Q 008727 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PD-----ATTYTSLL 512 (556)
Q Consensus 439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-----~~~~~~l~ 512 (556)
..+...+...|++++|++.|++.++.+ +.+...|..+..+|.+.|++++|++.++++++.... ++ ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 344455555566666666666655543 334555555566666666666666666655542100 00 12444455
Q ss_pred HHHHccCCHHHHHHHHHHhhhC
Q 008727 513 EGLCQETNLQAAFEVFNKSVNH 534 (556)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~m~~~ 534 (556)
..+...+++++|++.|++.+..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 5555566666666666555443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.70 E-value=0.00045 Score=55.16 Aligned_cols=120 Identities=8% Similarity=-0.051 Sum_probs=77.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChh
Q 008727 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452 (556)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 452 (556)
......|++++|.+.|....+.-.. ... ......+.+...-..+... ....+..+..++...|+++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG--~~l--------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRG--PVL--------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCS--STT--------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--ccc--------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCch
Confidence 4566777888888877777663211 000 0000111111111112111 2345677888888889999
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHhh
Q 008727 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE-----KGVAPDATT 507 (556)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 507 (556)
+|...++++.+.. +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|+..+
T Consensus 85 ~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 85 AVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999988888865 56788888889999999999999888888743 488887765
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=2.3e-05 Score=74.92 Aligned_cols=103 Identities=11% Similarity=-0.036 Sum_probs=70.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHH
Q 008727 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421 (556)
Q Consensus 342 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 421 (556)
..++.+.|...+....... ....+..+...+...|++++|...|++..+..+. +...|+.+...+...|+..+|+.
T Consensus 132 ~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~ 207 (497)
T d1ya0a1 132 KQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIF 207 (497)
T ss_dssp -----------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHH
T ss_pred hCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 3445555555444433221 1245666778888899999999999998887655 67789999999999999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhhcC
Q 008727 422 VIQEMKRKGLDPDVSFYNSLMEACCRED 449 (556)
Q Consensus 422 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 449 (556)
.|.+..... .|...++..|...+.+..
T Consensus 208 ~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 208 YYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 999888764 357778888888776544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.69 E-value=0.00079 Score=52.21 Aligned_cols=59 Identities=14% Similarity=-0.012 Sum_probs=26.8
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
|+.+..+|.+.|++++|++.++.+.+.. +.+..+|..+..+|...|++++|...|++..
T Consensus 70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al 128 (153)
T d2fbna1 70 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAA 128 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444444444432 2334444444444444444444444444444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.64 E-value=0.0013 Score=51.88 Aligned_cols=93 Identities=14% Similarity=0.065 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHH
Q 008727 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEG 514 (556)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~ 514 (556)
.+|+.+..+|.+.|++++|+..++...+.. +.+..+|..+..+|...|++++|.+.|+++++. .|+ ......+-..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 356667778888888888888888888764 567778888888888888899998888888865 343 3444433333
Q ss_pred HHccCCH-HHHHHHHHHh
Q 008727 515 LCQETNL-QAAFEVFNKS 531 (556)
Q Consensus 515 ~~~~g~~-~~a~~~~~~m 531 (556)
..+.+.. +...+++.+|
T Consensus 142 ~~~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 142 QKKAKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 3333332 2334444444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.64 E-value=0.00054 Score=54.32 Aligned_cols=64 Identities=13% Similarity=-0.001 Sum_probs=41.4
Q ss_pred HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
...|..+..++.+.|++++|+..++.+++.. +.+...|..+..+|...|++++|++.|++.++.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3455556666666677777777777666653 445566666666777777777777777766654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.62 E-value=0.00073 Score=53.87 Aligned_cols=58 Identities=9% Similarity=0.047 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 008727 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252 (556)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 252 (556)
+..+...+...|++++|+..++.+... .|.+...|..++.+|.+.|+.++|++.|+++
T Consensus 70 ~~~la~~~~~~g~~~~Al~~~~~al~~---~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 70 HTAKAEAEIACGRASAVIAELEALTFE---HPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 334444455555555555555555544 4444555555555555555555555555554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.61 E-value=0.0018 Score=50.09 Aligned_cols=74 Identities=14% Similarity=0.019 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 008727 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476 (556)
Q Consensus 401 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 476 (556)
.+|+.+..+|.+.|++++|++.++...+.... +..+|..+..++...|++++|...|+...+.. +-|..+...+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l 141 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 46777888899999999999999998887543 77899999999999999999999999999863 2234444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.55 E-value=0.0011 Score=52.42 Aligned_cols=123 Identities=12% Similarity=0.019 Sum_probs=81.0
Q ss_pred HHHHhcCChHHHHHHHHHHHh---CCCCc-----------cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 008727 373 KNLCKRNKSDELVEVYKVLSA---NDYFT-----------DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438 (556)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~---~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 438 (556)
..+.+.|++++|...|+.... ..... ....|+.+..+|.+.|++++|+..++...+.... +..+|
T Consensus 23 ~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~ 101 (168)
T d1kt1a1 23 TVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGL 101 (168)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHH
Confidence 345566666666666655442 11100 1225666778889999999999999999887543 77889
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHH
Q 008727 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE-GALRLFHNML 497 (556)
Q Consensus 439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~ 497 (556)
..+..++...|++++|...|+++.+.. +.+......+-....+.+... ...+++..|.
T Consensus 102 ~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 102 YRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999854 344555555544444443332 2334444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.54 E-value=0.00062 Score=53.94 Aligned_cols=68 Identities=12% Similarity=0.033 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
+...|..+..+|.+.|++++|+..++++++... .+...|..+..++.+.|++++|++.|+++++.++.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~ 143 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 143 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 345666777788888888888888888886532 25667777888888888888888888888876654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.46 E-value=0.00037 Score=53.55 Aligned_cols=71 Identities=8% Similarity=-0.080 Sum_probs=37.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcC----------CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 008727 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG----------RLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445 (556)
Q Consensus 376 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 445 (556)
-+.+.+++|...|+...+..+. +...+..+..+|...+ .+++|+..|++..+..+. +..+|..+..+|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y 85 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHH
Confidence 3445566777777776665544 5556666665555332 334555555555554322 344555555555
Q ss_pred hhc
Q 008727 446 CRE 448 (556)
Q Consensus 446 ~~~ 448 (556)
...
T Consensus 86 ~~~ 88 (145)
T d1zu2a1 86 TSF 88 (145)
T ss_dssp HHH
T ss_pred HHc
Confidence 433
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.44 E-value=8.7e-05 Score=63.64 Aligned_cols=52 Identities=12% Similarity=0.161 Sum_probs=31.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008727 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429 (556)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 429 (556)
+.|++++|+..+++..+..+. |...+..+...|+..|++++|...++...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 456666666666666655544 5556666666666666666666666666554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.43 E-value=0.00013 Score=62.44 Aligned_cols=123 Identities=10% Similarity=-0.094 Sum_probs=62.8
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHH
Q 008727 94 LSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173 (556)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 173 (556)
..+.|++++|+..+++.++.. |-+...+..+...++..|++++|.+.++...+..+. +...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHH
Confidence 345677777777777777665 556677777777777777777777777777665322 333444444433322222222
Q ss_pred HHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhc
Q 008727 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 174 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 218 (556)
..-...-...+-.++...+......+...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111110000111112222233334455556666666666665544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.42 E-value=0.00045 Score=53.05 Aligned_cols=116 Identities=9% Similarity=0.077 Sum_probs=83.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhc----------CChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008727 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE----------DLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (556)
Q Consensus 410 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (556)
|-+.+.+++|+..|+...+..+. +..++..+..+|... +.+++|+..|+++.+.. +.+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 44566799999999999987544 677888888877644 44578899999998864 5567888888888
Q ss_pred HHccCC-----------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCC
Q 008727 480 FSEVGE-----------IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 480 ~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 535 (556)
|...|+ +++|.+.|++..+. .|+...|..-+..+ .+|.+++.+..+.+
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 877653 57788888888854 67766665544443 45666666666555
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=0.00019 Score=68.43 Aligned_cols=227 Identities=8% Similarity=-0.056 Sum_probs=114.0
Q ss_pred HHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008727 279 EREVVLKKKRKLGVAPRTN-DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI 357 (556)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~ 357 (556)
+|.+.|++..+. +|+.. .+..+...+...++++++ +++++...+... ...+.. ..+-+..+..+.+.++...
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a-~~~~~e-~~Lw~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYA-LDKKVE-QDLWNHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHH-HHHTHH-HHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhH-HHHhHH-HHHHHHHHHHHHHHHHHhc
Confidence 677888877663 33322 333344456666666655 555544321100 001110 1111112345666666666
Q ss_pred HcCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008727 358 EKGRVPTLSTLSNLSKN--LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435 (556)
Q Consensus 358 ~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 435 (556)
+....++..-....+.. ....+.++.++..+....+..+ ++...+..+...+.+.|+.++|...+....... ..
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~ 152 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQ 152 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---HH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HH
Confidence 55444443322222222 1223445555544444333322 245567777777888888888888777665431 13
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 008727 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515 (556)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 515 (556)
.++..+...+...|++++|...|++..+.. +-+...|+.|...|...|+..+|...|.+.+... .|-..++..|...+
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 567778888888899999999999888864 4556788889999999999999999998888653 45666777777666
Q ss_pred Hcc
Q 008727 516 CQE 518 (556)
Q Consensus 516 ~~~ 518 (556)
.+.
T Consensus 231 ~~~ 233 (497)
T d1ya0a1 231 SKA 233 (497)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.13 E-value=0.0027 Score=49.23 Aligned_cols=90 Identities=13% Similarity=-0.008 Sum_probs=51.9
Q ss_pred HHhhcCChhhHHHHHHHHHHcC-CCC----------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----CCCCC---
Q 008727 444 ACCREDLLRPAKKLWDQMFASG-CSG----------NLKTYNILISKFSEVGEIEGALRLFHNMLEK-----GVAPD--- 504 (556)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~-~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~--- 504 (556)
.+...|++++|++.|++.++.. -.| ...+|+.+..+|...|++++|.+.+++.++. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 3344455555555555555421 001 1345666677777777777777777776542 11111
Q ss_pred --HhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 505 --ATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 505 --~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
...+..+..+|...|++++|++.|++.++
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12355566777888888888888887654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.00 E-value=0.0069 Score=46.80 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=69.3
Q ss_pred hHHHH--HHHHHhcCCHHHHHHHHHHHHHCCCC-CC----------HhHHHHHHHHHhhcCChhhHHHHHHHHHHc----
Q 008727 402 SYNVM--VSFLCTSGRLREAYGVIQEMKRKGLD-PD----------VSFYNSLMEACCREDLLRPAKKLWDQMFAS---- 464 (556)
Q Consensus 402 ~~~~l--i~~~~~~~~~~~a~~~~~~m~~~~~~-p~----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---- 464 (556)
+|..+ ...+.+.|++++|+..|++.++.... |+ ..+|+.+..+|...|++++|.+.+++..+.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 34455668888888888877653211 11 356888888899999999998888887752
Q ss_pred -CCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 465 -GCSGN-----LKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 465 -~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
...++ ...|+.+..+|...|++++|++.|++..+.
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11222 235677889999999999999999998753
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.0086 Score=41.53 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=14.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
++..+..++.+.|++++|+..++++++.+|
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P 77 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence 344444455555555555555555544443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.008 Score=41.68 Aligned_cols=65 Identities=12% Similarity=0.026 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhHhCC-----CCC-CHHhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 008727 84 PLSYHSILKSLSLSRQINAIDSVLKQVKVNK-----ITL-DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148 (556)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 148 (556)
...+..+...+.+.|++.+|...|++..+.. ..+ ...++..|..++.+.|++++|+..++++.+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3344455555556666666666655554321 011 1334455555555555555555555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.24 E-value=0.084 Score=38.95 Aligned_cols=112 Identities=11% Similarity=-0.015 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHH
Q 008727 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE----VGEIEGAL 490 (556)
Q Consensus 415 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 490 (556)
++++|+++|++..+.|. ......+. .....+.++|.+.+++..+.| ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 44555555555555542 11222221 223345666666666666654 23333344444443 34567777
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHhhhCCCc
Q 008727 491 RLFHNMLEKGVAPDATTYTSLLEGLCQ----ETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 491 ~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 537 (556)
+.|++..+.| ++.....|...|.+ ..+.++|.+++++..+.|..
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 7777777665 23334444444443 34677777777777766643
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.03 E-value=0.12 Score=38.03 Aligned_cols=82 Identities=13% Similarity=0.047 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCC
Q 008727 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE----VGE 485 (556)
Q Consensus 414 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 485 (556)
.+.++|.+++++..+.| +......|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 45667777777766654 33444444444433 345677777777777755 23334445445544 456
Q ss_pred HHHHHHHHHHHHHCCC
Q 008727 486 IEGALRLFHNMLEKGV 501 (556)
Q Consensus 486 ~~~A~~~~~~m~~~g~ 501 (556)
.++|.+.|++..+.|.
T Consensus 111 ~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 111 EKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 7777777777777664
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.87 E-value=0.17 Score=35.82 Aligned_cols=63 Identities=10% Similarity=0.088 Sum_probs=30.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
++..++.+..+|+-+.-.++++.+.+. -+|++...-.+..+|.+.|...++-+++.+.-+.|.
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 344444455555555555555554332 234444444555555555555555555555555554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.95 E-value=0.37 Score=34.04 Aligned_cols=140 Identities=8% Similarity=0.014 Sum_probs=86.3
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCccChhhHHHHHHHHHhhCcHHH
Q 008727 129 LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR-GVEFSTIGFGVFIWKFCENAKLGQ 207 (556)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~ 207 (556)
+.-.|..++..++..+...+. +..-||-+|.-....-+-+...+.++.+-+. ++.|-. ....++..+...+.
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~-Nlk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhhh-cHHHHHHHHHHhcc---
Confidence 445677777788777776542 5666777777777776666666666665431 121111 11122222222211
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287 (556)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 287 (556)
........++....+|+-+.-.++++.+.+. -+|+....-.+..+|.+.|...++-+++.+.
T Consensus 85 -----------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~A 146 (161)
T d1wy6a1 85 -----------------LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEA 146 (161)
T ss_dssp -----------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 1334455567777788888888888876663 4667777777788888888888888888887
Q ss_pred HhcCCC
Q 008727 288 RKLGVA 293 (556)
Q Consensus 288 ~~~~~~ 293 (556)
-+.|++
T Consensus 147 Ce~G~K 152 (161)
T d1wy6a1 147 CKKGEK 152 (161)
T ss_dssp HHTTCH
T ss_pred HHHhHH
Confidence 777764
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.22 E-value=0.82 Score=30.52 Aligned_cols=45 Identities=9% Similarity=0.163 Sum_probs=21.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
..+-++.+....+.|++....+.+.+|-+.+++..|.++|+-.+.
T Consensus 25 ~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 25 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333344444444445555555555555555555555555544443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.50 E-value=1.8 Score=28.80 Aligned_cols=63 Identities=8% Similarity=0.045 Sum_probs=39.6
Q ss_pred ChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 99 QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
+.-++++-++.+...++-|++.+..+.+++|.+.+++..|+++|+.++...- .+...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~-~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 4445566666666666677777777777777777777777777777654321 13345554443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.01 E-value=2.7 Score=29.67 Aligned_cols=18 Identities=6% Similarity=0.014 Sum_probs=6.8
Q ss_pred HHhhCcHHHHHHHHHHHH
Q 008727 199 FCENAKLGQVLSMLDEVR 216 (556)
Q Consensus 199 ~~~~g~~~~a~~~~~~~~ 216 (556)
|.+.|++++|.+.++.+.
T Consensus 83 yyklgdy~~A~~~~~~~L 100 (124)
T d2pqrb1 83 CYKLGEYSMAKRYVDTLF 100 (124)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 333333333333333333
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.90 E-value=2.8 Score=29.62 Aligned_cols=67 Identities=12% Similarity=0.007 Sum_probs=38.3
Q ss_pred CCHHhHHHHHHHHHcC---CChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008727 117 LDSSVYRFIIPSLIQG---KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183 (556)
Q Consensus 117 ~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 183 (556)
++..+.-...-++++. .+.++++.+++.+.+.++.-....+-.|.-+|.+.|++++|.+.++.+.+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3444433334444433 345567777777665432212345566666777777777777777777664
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=85.01 E-value=13 Score=33.26 Aligned_cols=419 Identities=8% Similarity=-0.023 Sum_probs=224.3
Q ss_pred HHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHH
Q 008727 52 VARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSL--SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL 129 (556)
Q Consensus 52 ~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 129 (556)
+....+.+..++...+.++...+ .++ | ...|-..-..- .......++..+++.-.. -+.........+..+
T Consensus 10 y~~a~~a~~~~~~~~~~~~~~~L-~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~--~P~~~~lr~~~l~~L 82 (450)
T d1qsaa1 10 YAQIKQAWDNRQMDVVEQMMPGL-KDY---P-LYPYLEYRQITDDLMNQPAVTVTNFVRANPT--LPPARTLQSRFVNEL 82 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHSGGG-TTS---T-THHHHHHHHHHHTGGGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhhh-cCC---C-CHHHHHHHHHHhccccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHH
Confidence 34445555555555555544443 222 2 22332222222 223344444444433211 122233444556677
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHH
Q 008727 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209 (556)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 209 (556)
.+.++++..+..+. ..+.+...-.....+....|+.++|.+.+..+-..|.. .......+..
T Consensus 83 ~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~------------ 144 (450)
T d1qsaa1 83 ARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFS------------ 144 (450)
T ss_dssp HHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHH------------
T ss_pred HhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHH------------
Confidence 78888776554332 22335666667778888889888888888777665532 2222233332
Q ss_pred HHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
.+... | ..++...+ .-+......|+...|..+...+... ........+........+.. .. ..
T Consensus 145 ----~~~~~-~-~lt~~~~~-~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p~~~~~---~~---~~ 207 (450)
T d1qsaa1 145 ----VWRAS-G-KQDPLAYL-ERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNPNTVLT---FA---RT 207 (450)
T ss_dssp ----HHHHT-T-CSCHHHHH-HHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCGGGHHH---HH---HH
T ss_pred ----HHHhc-C-CCCHHHHH-HHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhChHhHHH---HH---hc
Confidence 22222 1 12222222 3345556678888888887654322 33344445444433222222 11 11
Q ss_pred cCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCHHHH--HHHHHH--HhcCChhHHHHHHHHHHHcCCCC
Q 008727 290 LGVAPRTNDYREFILGLIV--ERRICEAKELGEVIVSGKFTIDDDVL--NALIGS--VSSIDPRSAIVFFNFMIEKGRVP 363 (556)
Q Consensus 290 ~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~--~~~~~~~~a~~~~~~~~~~~~~~ 363 (556)
. ..+......+..++.+ ..+.+.+...+............... ...+.. ...+..+.+...+......+ .
T Consensus 208 ~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~ 283 (450)
T d1qsaa1 208 T--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--Q 283 (450)
T ss_dssp S--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--C
T ss_pred C--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--c
Confidence 1 1222333333333333 35777888888777654333222221 111111 22356677888777776654 3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 008727 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443 (556)
Q Consensus 364 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 443 (556)
+.......+......+++..+...+..+.... .....-.--+.+++...|+.++|...|...... ++ -|..|..
T Consensus 284 ~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa 357 (450)
T d1qsaa1 284 STSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA 357 (450)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH
T ss_pred chHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHH
Confidence 44555556666777899999999988876432 223445566778899999999999999988742 33 3433322
Q ss_pred HHhhcCCh-hhHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 008727 444 ACCREDLL-RPAKKLWDQMFASGCSGNL----KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518 (556)
Q Consensus 444 ~~~~~~~~-~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 518 (556)
. +.|.. .-... .....+.. ..-..-+..+...|....|...|..+.+. . +......+.....+.
T Consensus 358 ~--~Lg~~~~~~~~------~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~-~--~~~~~~~la~lA~~~ 426 (450)
T d1qsaa1 358 Q--RIGEEYELKID------KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNN 426 (450)
T ss_dssp H--HTTCCCCCCCC------CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHT
T ss_pred H--HcCCCCCCCcC------CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC-C--CHHHHHHHHHHHHHC
Confidence 2 22211 00000 00000000 00112356677899999999999988754 2 455666777888999
Q ss_pred CCHHHHHHHHHHhhh
Q 008727 519 TNLQAAFEVFNKSVN 533 (556)
Q Consensus 519 g~~~~a~~~~~~m~~ 533 (556)
|.++.|+....+...
T Consensus 427 g~~~~aI~a~~~~~~ 441 (450)
T d1qsaa1 427 QWWDLSVQATIAGKL 441 (450)
T ss_dssp TCHHHHHHHHHHTTC
T ss_pred CChhHHHHHHHHHHc
Confidence 999999988877643
|