Citrus Sinensis ID: 008728

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550------
Protein Sequence
MSSGSLSHPPHLRTLFKQQPPSSNDNDGGDVDEELIMKALDIRRQVTAEIFKEAMWRKGKFGITYSTNVADRLPDFIDHVMIKAAALKKLPEFADSSFNVRAKWFIEDSNVVPLIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYMLACSNEEFNQKVADKVEGRRLYELGLINEAPHSQTVDDSLRQQDAVDYTDIGSKASEPQAIDSSIERTEFDRSSN
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHcHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHHHcccccEEcccccHHHHHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccHHHHHHHHHcccccccHHHccccHHHHHHHHHHHHccHHHHHHcccccccccccHHHHHHccccHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccccHcccccHHHHHHHHHHHHHccHHHHcccccccccEEccccccHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHccHHccccHHHccHHHHHHHHHccccHHHHHHHHHHcccHHcccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEcccHHHHcHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHHccccHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHHcccHHHHHHccHEHcccHHHHcHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHccccccccccHHccccHHHcccEEEEcccccEEccccccccEccccc
Coil and Loop (DISEMBL)
mssgslshpphlrtlfkqqppssndndggdvdEELIMKALDIRRQVTAEIFKEAMWRKgkfgitystnvadrlpdFIDHVMIKAAALKklpefadssfNVRAKWfiedsnvvPLIRWLkhnglsypkIAKLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLEtngvrrdwmgyvmsrcpqLLSQSIEEVKTRVHFYLDmgmnkndfgtmvfdypkiLGFLTLEEMHQKVTYLKEFGLSTEDVGRLLafrphlmgcgigerWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFdlettivpkvrffqdigvrDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKagvserdigkclalgpellgcsignkLEVNVKYFLSLGIKLHQLGAMIADFPMLLRynidifrpkYRYLRRTMVRPlqdliefprffsysleeriiprhkIMVENRVNFKLRYMLACSNEEFNQKVADKVEGRRLYELglineaphsqtvddslrqqdavdytdigskasepqaidssiertefdrssn
Flexible Loop (DISEMBL)
mssgslshpphlrtlfkqqppssndndgGDVDEELIMKALDIRRQVTAEIFKEAMWRKGKFGITYSTNVADRLPDFIDHVMIKAAALKKLPEFADSSFNVRAKWFIEDSNVVPLIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMgcgigerwkpLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLeeriiprhkimVENRVNFKLRYMLACSNEEFNQKVADKVEGRRLYELGLineaphsqtvddslrQQDAVDYTDigskasepqaidssiertefdrssn
Low Complexity Region (SEG)
MSSGSLSHPPHLRTLFKQQPPSSNDNDGGDVDEELIMKALDIRRQVTAEIFKEAMWRKGKFGITYSTNVADRLPDFIDHVMIKAAALKKLPEFADSSFNVRAKWFIEDSNVVPLIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYMLACSNEEFNQKVADKVEGRRLYELGLINEAPHSQTVDDSLRQQDAVDYTDIGSKASEPQAIDSSIERTEFDRSSN
Disordered region (IsUnstruct)
**********************************LIMKALDIRRQVTAEIFKEAMWRKGKFGITYSTNVADRLPDFIDHVMIKAAALKKLPEFADSSFNVRAKWFIEDSNVVPLIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYMLACSNEEFNQKVADKVEGRRLYELGLIN***********************************************
Disordered Region (DISOPRED)
************RTLFK*****************LIMKALDI*R*************************ADRLPDFIDHVMIKAAA**********SFNVRAKWFIEDSNVVPLIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYMLACSNEEFNQKVADKVEGRRLYELG**************************************************
Disordered Region (DISEMBL)
********PPHLRTLFKQ*********GGDVDEELIMKALDIRRQVTAEIFKEAMWRKGKFGITYSTNVADRLPDFIDHVMIKAAALKKLPEFADSSFNVRAKWFIEDSNVVPLIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYMLACSNEEFNQKVADKVEGRRLYELGLINEAPHSQTVDDSLRQQDAVDYTDIGSKASEPQA***************
Disordered Region (DISPRO)
*****************************DVDEELIMKALDIRRQVTAEIFKEAMWRKGKFGITYSTNVADRLPDFIDHVMIKAAALKKLPEFADSSFNVRAKWFIEDSNVVPLIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYMLACSNEEFNQKVADKVEGRRLYELGLINEAPHSQTVDDSLRQQDAVDYTDIGSKASEPQAIDS************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSGSLSHPPHLRTLFKQQPPSSNDNDGGDVDEELIMKALDIRRQVTAEIFKEAMWRKGKFGITYSTNVADRLPDFIDHVMIKAAALKKLPEFADSSFNVRAKWFIEDSNVVPLIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYMLACSNEEFNQKVADKVEGRRLYELGLINEAPHSQTVDDSLRQQDAVDYTDIGSKASEPQAIDSSIERTEFDRSSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	556	2.2.26 [Sep-21-2011]
Q49AM1	385	mTERF domain-containing p	yes	no	0.460	0.664	0.228	5e-06
Q5R6G1	385	mTERF domain-containing p	yes	no	0.449	0.649	0.222	0.0003

>sp|Q49AM1|MTER3_HUMAN mTERF domain-containing protein 3, mitochondrial OS=Homo sapiens GN=MTERFD3 PE=1 SV=2

 Score = 53.1 bits (126), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 117/276 (42%), Gaps = 20/276 (7%)

Query: 178 LNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDY 237
           + EI   L+  G     +  ++ RCP+ +  S   V T+   +  +  N+ +   ++  +
Sbjct: 77  VEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQF 136

Query: 238 PKILGFLTLEEMHQK---VTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLY- 293
           P+   F T+++   +   V + +E GL    + RLL   P++    + E+ K +V+ L  
Sbjct: 137 PE--SFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNPV-EKNKQMVRILQE 193

Query: 294 -YLGV--SRDGMR----RMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFP 346
            YL V  S   M+    ++L   P +   +  T I   + F Q+ G     I  +L K  
Sbjct: 194 SYLDVGGSEANMKVWLLKLLSQNPFIL-LNSPTAIKETLEFLQEQGFTSFEILQLLSKLK 252

Query: 347 SLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGI 406
             L     + I+  + F       ++ D+ + +   P LL  S+   LE  ++  L  GI
Sbjct: 253 GFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVP-VLEERMQGLLREGI 311

Query: 407 KLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVR 442
            + Q    I + PM+L     I + + R L  +  R
Sbjct: 312 SIAQ----IRETPMVLELTPQIVQYRIRKLNSSGYR 343

Binds promoter DNA and regulates mitochondrial transcription. Required for normal levels of transcription, both for mRNA and tRNA. Required for normal mitochondrial protein synthesis, assembly of respiratory complexes and normal mitochondrial function.
Homo sapiens (taxid: 9606)

>sp|Q5R6G1|MTER3_PONAB mTERF domain-containing protein 3, mitochondrial OS=Pongo abelii GN=MTERFD3 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 113/270 (41%), Gaps = 20/270 (7%)

Query: 178 LNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDY 237
           + EI   L+  G     +  ++ RCP+ +      V T+   +  +  N+ +   ++  +
Sbjct: 77  VEEIANILQELGADETAVANILERCPEAIVCRPTAVNTQRKLWQLVCKNEEELIKLIEQF 136

Query: 238 PKILGFLTLEEMHQK---VTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLY- 293
           P+   F T+++   +   V + +E GL    + RLL    ++    + E+ K +V+ L  
Sbjct: 137 PE--SFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAASNVFHNPV-EKNKQMVRILQE 193

Query: 294 -YLGV--SRDGMR----RMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFP 346
            YL V  S   M+    ++L   P +   +  T I   + F Q+ G     I  +L K  
Sbjct: 194 SYLNVGGSEANMKVWLLKLLSQNPFIL-LNSPTAIKETLEFLQEQGFTSFEILQLLSKLK 252

Query: 347 SLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGI 406
             L     + I+  + F       ++ D+ + +   P LL  S+   LE  ++  L  GI
Sbjct: 253 GFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVP-VLEERMQGLLREGI 311

Query: 407 KLHQLGAMIADFPMLLRYNIDIFRPKYRYL 436
            + Q    I + PM+L     I + + R L
Sbjct: 312 SIAQ----IRETPMVLELTPQIVQYRIRKL 337

Binds promoter DNA and regulates mitochondrial transcription. Required for normal levels of transcription, both for mRNA and tRNA. Required for normal mitochondrial protein synthesis, assembly of respiratory complexes and normal mitochondrial function.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	556
359475176	678	PREDICTED: uncharacterized protein LOC10	0.969	0.794	0.714	0.0
297741461	526	unnamed protein product [Vitis vinifera]	0.926	0.979	0.738	0.0
224103411	523	predicted protein [Populus trichocarpa]	0.922	0.980	0.719	0.0
255536843	643	conserved hypothetical protein [Ricinus	0.888	0.768	0.748	0.0
186502112	641	transcription termination factor family	0.920	0.798	0.682	0.0
297821369	613	EMB2219 [Arabidopsis lyrata subsp. lyrat	0.897	0.814	0.696	0.0
4417266	673	hypothetical protein [Arabidopsis thalia	0.919	0.759	0.641	0.0
357473247	617	mTERF domain-containing protein [Medicag	0.899	0.810	0.701	0.0
449465409	659	PREDICTED: uncharacterized protein LOC10	0.922	0.778	0.674	0.0
449525524	659	PREDICTED: uncharacterized LOC101220316	0.922	0.778	0.674	0.0

>gi|359475176|ref|XP_003631610.1| PREDICTED: uncharacterized protein LOC100852464 [Vitis vinifera]

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/550 (71%), Positives = 451/550 (82%), Gaps = 11/550 (2%)

Query: 2   SSGSLSHPPHLRTLFKQQPPSSNDNDGGDVDEELIMKALDIRRQVTAEIFKEAMWRKGKF 61
           S    S PP L  LF  +    +D D    D+E+IM+AL+IRR VT EIFKEAM RKGKF
Sbjct: 129 SQSETSKPP-LAKLFNGE----SDED----DDEMIMRALEIRRNVTVEIFKEAM-RKGKF 178

Query: 62  GITYSTNVADRLPDFIDHVMIKAAALKKLPEFADSSFNVRAKWFIEDSNVVPLIRWLKHN 121
           GITYS N+  RLPDFID+VMI+AA++K+LPEF+ S+FN RAK  I DSNVVPLIRWLKHN
Sbjct: 179 GITYSNNLVSRLPDFIDYVMIEAASMKQLPEFSHSTFNTRAKTVIHDSNVVPLIRWLKHN 238

Query: 122 GLSYPKIAKLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEI 181
            LSYP+I KLICMS GNLE+IR L EWLK++HV+GEFLG  ++K GG+ILERSIEEL++I
Sbjct: 239 SLSYPRIGKLICMSMGNLETIRGLVEWLKTIHVRGEFLGFVIMKAGGDILERSIEELDDI 298

Query: 182 VEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKIL 241
           V YLE NGVRRDWMG VMSRCPQLLS SIEEVKTRV FYLDMGMN+ DFGTMVFDYPK L
Sbjct: 299 VRYLENNGVRRDWMGNVMSRCPQLLSYSIEEVKTRVGFYLDMGMNEKDFGTMVFDYPKAL 358

Query: 242 GFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDG 301
           G+ TLEEM++KV+YLKEFGL+ EDVGRLLAF+P LMGC I ERWKP VKYLYYLGV R+G
Sbjct: 359 GYFTLEEMNEKVSYLKEFGLNNEDVGRLLAFKPQLMGCSIEERWKPFVKYLYYLGVCREG 418

Query: 302 MRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVV 361
           MRRML+IKPMVFC DLE TIVPKVRFFQDIG+RD+ I NMLVKFP LLTYSLYKKIRPVV
Sbjct: 419 MRRMLIIKPMVFCVDLEKTIVPKVRFFQDIGIRDDAIGNMLVKFPPLLTYSLYKKIRPVV 478

Query: 362 IFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPML 421
           IFL+TKAGVS +DI K +ALGPELLGCSI +KLEVNVKYFLSLGI L  LG MIADFPML
Sbjct: 479 IFLITKAGVSRKDIAKVIALGPELLGCSIVHKLEVNVKYFLSLGIPLQILGEMIADFPML 538

Query: 422 LRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYM 481
           LRYNID+ RPKYRYLRRTMVRPL+DLIEFPRFFSYSL++RIIPRHK +VENRVNFKLRYM
Sbjct: 539 LRYNIDVLRPKYRYLRRTMVRPLKDLIEFPRFFSYSLDDRIIPRHKALVENRVNFKLRYM 598

Query: 482 LACSNEEFNQKVADKVEGRRLYELGLINEA-PHSQTVDDSLRQQDAVDYTDIGSKASEPQ 540
           LA S+EEF ++V   VE R  +E GL++     SQT +DSL  +  VD+       SE Q
Sbjct: 599 LAISDEEFARRVEAAVERRSRFESGLMSSTLSDSQTTNDSLENRTLVDFCGREVAFSECQ 658

Query: 541 AIDSSIERTE 550
             ++ +  ++
Sbjct: 659 TSENQVSSSK 668

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741461|emb|CBI32592.3| unnamed protein product [Vitis vinifera]

 Score =  789 bits (2037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/517 (73%), Positives = 437/517 (84%), Gaps = 2/517 (0%)

Query: 35  LIMKALDIRRQVTAEIFKEAMWRKGKFGITYSTNVADRLPDFIDHVMIKAAALKKLPEFA 94
           +IM+AL+IRR VT EIFKEAM RKGKFGITYS N+  RLPDFID+VMI+AA++K+LPEF+
Sbjct: 1   MIMRALEIRRNVTVEIFKEAM-RKGKFGITYSNNLVSRLPDFIDYVMIEAASMKQLPEFS 59

Query: 95  DSSFNVRAKWFIEDSNVVPLIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHV 154
            S+FN RAK  I DSNVVPLIRWLKHN LSYP+I KLICMS GNLE+IR L EWLK++HV
Sbjct: 60  HSTFNTRAKTVIHDSNVVPLIRWLKHNSLSYPRIGKLICMSMGNLETIRGLVEWLKTIHV 119

Query: 155 KGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVK 214
           +GEFLG  ++K GG+ILERSIEEL++IV YLE NGVRRDWMG VMSRCPQLLS SIEEVK
Sbjct: 120 RGEFLGFVIMKAGGDILERSIEELDDIVRYLENNGVRRDWMGNVMSRCPQLLSYSIEEVK 179

Query: 215 TRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRP 274
           TRV FYLDMGMN+ DFGTMVFDYPK LG+ TLEEM++KV+YLKEFGL+ EDVGRLLAF+P
Sbjct: 180 TRVGFYLDMGMNEKDFGTMVFDYPKALGYFTLEEMNEKVSYLKEFGLNNEDVGRLLAFKP 239

Query: 275 HLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVR 334
            LMGC I ERWKP VKYLYYLGV R+GMRRML+IKPMVFC DLE TIVPKVRFFQDIG+R
Sbjct: 240 QLMGCSIEERWKPFVKYLYYLGVCREGMRRMLIIKPMVFCVDLEKTIVPKVRFFQDIGIR 299

Query: 335 DEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKL 394
           D+ I NMLVKFP LLTYSLYKKIRPVVIFL+TKAGVS +DI K +ALGPELLGCSI +KL
Sbjct: 300 DDAIGNMLVKFPPLLTYSLYKKIRPVVIFLITKAGVSRKDIAKVIALGPELLGCSIVHKL 359

Query: 395 EVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFF 454
           EVNVKYFLSLGI L  LG MIADFPMLLRYNID+ RPKYRYLRRTMVRPL+DLIEFPRFF
Sbjct: 360 EVNVKYFLSLGIPLQILGEMIADFPMLLRYNIDVLRPKYRYLRRTMVRPLKDLIEFPRFF 419

Query: 455 SYSLEERIIPRHKIMVENRVNFKLRYMLACSNEEFNQKVADKVEGRRLYELGLINEA-PH 513
           SYSL++RIIPRHK +VENRVNFKLRYMLA S+EEF ++V   VE R  +E GL++     
Sbjct: 420 SYSLDDRIIPRHKALVENRVNFKLRYMLAISDEEFARRVEAAVERRSRFESGLMSSTLSD 479

Query: 514 SQTVDDSLRQQDAVDYTDIGSKASEPQAIDSSIERTE 550
           SQT +DSL  +  VD+       SE Q  ++ +  ++
Sbjct: 480 SQTTNDSLENRTLVDFCGREVAFSECQTSENQVSSSK 516

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103411|ref|XP_002313046.1| predicted protein [Populus trichocarpa] gi|222849454|gb|EEE87001.1| predicted protein [Populus trichocarpa]

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/521 (71%), Positives = 436/521 (83%), Gaps = 8/521 (1%)

Query: 35  LIMKALDIRRQVTAEIFKEAMWRKGKFGITYSTNVADRLPDFIDHVMIKAAALKKLPEFA 94
           +++KA++IRR+VTAEIFK+AM +KGKFGITYSTN+ +RL DF+D VMIKAAA+K++ EF 
Sbjct: 1   MVVKAIEIRRKVTAEIFKQAMRKKGKFGITYSTNLVNRLDDFVDFVMIKAAAMKRMDEFE 60

Query: 95  DSSFNVRAKWFIEDSNVVPLIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHV 154
             SFN RA+  IE+ NVV LIRWLKHN +SYP+IAKLI MS GN++SIR + EWLKS+HV
Sbjct: 61  FLSFNDRARRVIEELNVVSLIRWLKHNAVSYPRIAKLIYMSRGNVDSIRRVTEWLKSIHV 120

Query: 155 KGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVK 214
           KGEFLG  L K G NILERSIEEL+EIV YLE+NGVR DWMGYVMSRCPQLL  S+EEVK
Sbjct: 121 KGEFLGSVLTKAGENILERSIEELDEIVWYLESNGVRMDWMGYVMSRCPQLLCCSMEEVK 180

Query: 215 TRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRP 274
           TRV F+LDMGMN+ DFGTMVFDYP++LG+ TLEEM+QKV YLKEFGLS EDVGRLLAF+P
Sbjct: 181 TRVGFFLDMGMNEKDFGTMVFDYPRVLGYFTLEEMNQKVNYLKEFGLSNEDVGRLLAFKP 240

Query: 275 HLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVR 334
            LMGC I ERWKPLVKYLYYLG+SRDGM+RMLVIKPMVFC DLE TIVPKVRFFQDIG+R
Sbjct: 241 QLMGCSIEERWKPLVKYLYYLGISRDGMKRMLVIKPMVFCVDLEQTIVPKVRFFQDIGIR 300

Query: 335 DEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKL 394
           D+ I NMLVKFP LLTYSLYKKIRPVVIFLMTKAGVSER+I K +ALGPELLGCSI NKL
Sbjct: 301 DDAIGNMLVKFPPLLTYSLYKKIRPVVIFLMTKAGVSERNIAKAIALGPELLGCSIVNKL 360

Query: 395 EVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFF 454
           E+N+KY LSLGI+  QLG MIADFPMLLRYNID+ RPKY+YLRRTMVRPLQDLIEFPRFF
Sbjct: 361 EINLKYLLSLGIRHRQLGEMIADFPMLLRYNIDLLRPKYKYLRRTMVRPLQDLIEFPRFF 420

Query: 455 SYSLEERIIPRHKIMVENRVNFKLRYMLACSNEEFNQKVADKVEGRRLYELGLINEAPHS 514
           SYSL++RIIPRHK++VENR+NFKLRYMLA ++EEF +KV   VE RR +E GL+ +   +
Sbjct: 421 SYSLDDRIIPRHKVLVENRINFKLRYMLASTDEEFQKKVEAAVERRRKFESGLMGDNSQA 480

Query: 515 QTVDDSLRQQDAVDYTDIGSKASEPQAIDSSIERTEFDRSS 555
              D S  + D         +  E + I SS  +T F+ +S
Sbjct: 481 SDADSSEEEIDV--------QFPETEIIVSSSPKTRFNFNS 513

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536843|ref|XP_002509488.1| conserved hypothetical protein [Ricinus communis] gi|223549387|gb|EEF50875.1| conserved hypothetical protein [Ricinus communis]

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/494 (74%), Positives = 422/494 (85%)

Query: 35  LIMKALDIRRQVTAEIFKEAMWRKGKFGITYSTNVADRLPDFIDHVMIKAAALKKLPEFA 94
           LI+KA++IRR+VTAEIFK+ M RKGKFGITYSTN+ +RL DFID +MI+AAALKKLPEF 
Sbjct: 141 LIIKAIEIRRKVTAEIFKDVMRRKGKFGITYSTNLVNRLNDFIDFIMIQAAALKKLPEFE 200

Query: 95  DSSFNVRAKWFIEDSNVVPLIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHV 154
             SFN RA+  IE+ +VVPLIRWLKHNGLSYPKIAK+IC + GNL SIR LA+WLKS+HV
Sbjct: 201 SLSFNARARTIIEELDVVPLIRWLKHNGLSYPKIAKVICATRGNLGSIRRLADWLKSIHV 260

Query: 155 KGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVK 214
           +GEFLGV L K G NILERS EEL+EIVEYLE+NGVRRDWMGYVMSRCPQLLS S+E+VK
Sbjct: 261 RGEFLGVVLTKAGYNILERSDEELSEIVEYLESNGVRRDWMGYVMSRCPQLLSYSLEQVK 320

Query: 215 TRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRP 274
           TRV FYLDMGMN+ D GTMVFD P++LG+ TL+EM+QKV YLKEFGL+ EDVGRLLAF+P
Sbjct: 321 TRVRFYLDMGMNEKDLGTMVFDCPRVLGYFTLKEMNQKVNYLKEFGLNNEDVGRLLAFKP 380

Query: 275 HLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVR 334
            LM C I ERWKPLVKYLYYLG+SRDGMRR+L IKPM+FC DLE TIVPKVRFF+DIGVR
Sbjct: 381 ELMCCSIEERWKPLVKYLYYLGISRDGMRRILTIKPMIFCVDLEQTIVPKVRFFKDIGVR 440

Query: 335 DEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKL 394
           ++ + NMLVKFP LLTYSLYKKIRPVVIFLMTKAGVSERDIGK +ALGPELLGCSI +KL
Sbjct: 441 EDAVGNMLVKFPPLLTYSLYKKIRPVVIFLMTKAGVSERDIGKVIALGPELLGCSIAHKL 500

Query: 395 EVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFF 454
           +++VKY+LSLGI   QLG MIADFPMLLRY+ID+ RPKYRYLRRTMVRPLQDLIEFPRFF
Sbjct: 501 DLSVKYYLSLGIGRRQLGEMIADFPMLLRYSIDLLRPKYRYLRRTMVRPLQDLIEFPRFF 560

Query: 455 SYSLEERIIPRHKIMVENRVNFKLRYMLACSNEEFNQKVADKVEGRRLYELGLINEAPHS 514
           SYSL+ RIIPRHKI+VEN+VNFKLRYML  S+ EF   V   VE RR +E G++N    +
Sbjct: 561 SYSLDGRIIPRHKILVENQVNFKLRYMLGSSDVEFQNMVEAAVERRRRFESGIMNVNLSN 620

Query: 515 QTVDDSLRQQDAVD 528
             VD     Q A D
Sbjct: 621 SQVDAQTNLQIADD 634

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186502112|ref|NP_179763.3| transcription termination factor family protein [Arabidopsis thaliana] gi|330252119|gb|AEC07213.1| transcription termination factor family protein [Arabidopsis thaliana]

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/519 (68%), Positives = 439/519 (84%), Gaps = 7/519 (1%)

Query: 7   SHPPHLRTLFKQQPPSSNDNDGGDVDEELIMKALDIRRQVTAEIFKEAMWRKGKFGITYS 66
           S  P LR         S+ +D G+ + E+I+KAL+IRR+VT EI KE++ RKG+FGITY+
Sbjct: 115 SSLPSLRNFL-----GSDGDDDGESEREMIVKALEIRRKVTKEIIKESLVRKGRFGITYA 169

Query: 67  TNVADRLPDFIDHVMIKAAALKKLPEFADSSFNVRAKWFIEDSNVVPLIRWLKHNGLSYP 126
           TNV DRL DF+DHVMI+AAALK+LPEF++S FN+RA+  IEDSN VPL+RWLKH+ LSY 
Sbjct: 170 TNVTDRLGDFVDHVMIQAAALKRLPEFSESRFNLRARTVIEDSNFVPLVRWLKHHELSYN 229

Query: 127 KIAKLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLE 186
           +IAK+ICMS GNL+SIR + EWLKS+HVKGEF+ VA L++G NIL+R+ EELNEIVEYLE
Sbjct: 230 RIAKIICMSKGNLDSIRIMIEWLKSIHVKGEFIAVAFLRSGDNILQRNREELNEIVEYLE 289

Query: 187 TNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTL 246
           +NGVRRDWMGYV+ RCP+LLS S+EEVK+RV F+L MGMN+NDFGTMV+DYPKI+GF + 
Sbjct: 290 SNGVRRDWMGYVVGRCPELLSFSMEEVKSRVDFFLKMGMNQNDFGTMVYDYPKIIGFFSF 349

Query: 247 EEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRML 306
           + M +K+ YLKEFGLSTE+VGRLLA++PHLMGC I ERWKPLVKY YYLG+ ++GM+R+L
Sbjct: 350 QVMEKKINYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRIL 409

Query: 307 VIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMT 366
           V+KP+++C DLE TI PKVRF Q++G+ +E I NMLVKFPSLLT SLYKKIRPVVIFL+T
Sbjct: 410 VVKPILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLT 469

Query: 367 KAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNI 426
           +AGV+++DIGK +A+ P LLGCSIG KLE N++Y++SLGI+ +QLG MIADFPMLLRYN+
Sbjct: 470 RAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNV 529

Query: 427 DIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYMLACSN 486
           D  RPKYRYLRRTM+RPLQDLIEFPRFFSYSLE RIIPRH IMVENRVNFKLRYMLAC++
Sbjct: 530 DNLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTD 589

Query: 487 EEFNQKVADKVEGRRLYELGLINEAPHSQTVDDSLRQQD 525
           EEF ++V DKVE R  +E GL +E   SQ  D+++  Q+
Sbjct: 590 EEFERRVRDKVERRERFEAGLDSE--DSQPSDENISDQE 626

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821369|ref|XP_002878567.1| EMB2219 [Arabidopsis lyrata subsp. lyrata] gi|297324406|gb|EFH54826.1| EMB2219 [Arabidopsis lyrata subsp. lyrata]

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/504 (69%), Positives = 431/504 (85%), Gaps = 5/504 (0%)

Query: 7   SHPPHLRTLFKQQPPSSNDNDGGDVDEELIMKALDIRRQVTAEIFKEAMWRKGKFGITYS 66
           S  P LR         S+ +D G+ + E+I KAL+IRR+VT EI KE++ RKG+FGITY+
Sbjct: 112 SSLPSLRKFL-----GSDGDDDGESEREMIDKALEIRRKVTKEIIKESLVRKGRFGITYA 166

Query: 67  TNVADRLPDFIDHVMIKAAALKKLPEFADSSFNVRAKWFIEDSNVVPLIRWLKHNGLSYP 126
           TNV DRL DF+DHVMI+AAALK+LPEF++S FN+RA+  I+DSN VPL+RWLKH+  SY 
Sbjct: 167 TNVTDRLGDFVDHVMIQAAALKRLPEFSESRFNLRARTVIDDSNFVPLVRWLKHHEFSYN 226

Query: 127 KIAKLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLE 186
           +IAK+ICMS GNL+SIR + EWLK++HVKGEF+GVA L++G NIL+RS EEL+EIVEYLE
Sbjct: 227 RIAKIICMSKGNLDSIRIMIEWLKTIHVKGEFIGVAFLRSGDNILQRSREELDEIVEYLE 286

Query: 187 TNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTL 246
           +NGVRRDWMGYV+ RCP+LLS S+EEVK+RV F+L MGMN+NDFGTMV+DYPKI+G+ + 
Sbjct: 287 SNGVRRDWMGYVVGRCPELLSFSMEEVKSRVDFFLKMGMNQNDFGTMVYDYPKIIGYFSF 346

Query: 247 EEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRML 306
           EEM +K+ YLKEFGLSTE+VGRLLAF+PHLMGC I ERWKPLVKY YYLG+ ++GM+R+L
Sbjct: 347 EEMEKKINYLKEFGLSTEEVGRLLAFKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRIL 406

Query: 307 VIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMT 366
           V+KP+++C DLE TI PKVRF Q++G+ +E I NMLVKFPSLLT SLYKKIRPVVIFL+T
Sbjct: 407 VVKPILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLT 466

Query: 367 KAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNI 426
           +AGV+++DIGK +A+ P LLGCSIG KLE N++Y++SLGI+ HQLG MIADFPMLLRYN+
Sbjct: 467 RAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFHQLGEMIADFPMLLRYNV 526

Query: 427 DIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYMLACSN 486
           D  RPKYRYLRRTM+RPLQDLIEFPRFFSYSLE RIIPRH IMVENRVNFKLRYMLAC++
Sbjct: 527 DNLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTD 586

Query: 487 EEFNQKVADKVEGRRLYELGLINE 510
           EEF ++V DKVE R  +E GL +E
Sbjct: 587 EEFERRVRDKVERRERFEAGLDSE 610

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4417266|gb|AAD20391.1| hypothetical protein [Arabidopsis thaliana] gi|20198096|gb|AAM15397.1| hypothetical protein [Arabidopsis thaliana]

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/552 (64%), Positives = 438/552 (79%), Gaps = 41/552 (7%)

Query: 7   SHPPHLRTLFKQQPPSSNDNDGGDVDEELIMKALDIRRQVTAEIFKEAMWRKGKFGITYS 66
           S  P LR         S+ +D G+ + E+I+KAL+IRR+VT EI KE++ RKG+FGITY+
Sbjct: 115 SSLPSLRNFL-----GSDGDDDGESEREMIVKALEIRRKVTKEIIKESLVRKGRFGITYA 169

Query: 67  TNVADRLPDFIDHVMIKAAALKKLPEFADSSFNVRAKWFIEDSNVVPLIRWLKHNGLSYP 126
           TNV DRL DF+DHVMI+AAALK+LPEF++S FN+RA+  IEDSN VPL+RWLKH+ LSY 
Sbjct: 170 TNVTDRLGDFVDHVMIQAAALKRLPEFSESRFNLRARTVIEDSNFVPLVRWLKHHELSYN 229

Query: 127 KIAKLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLE 186
           +IAK+ICMS GNL+SIR + EWLKS+HVKGEF+ VA L++G NIL+R+ EELNEIVEYLE
Sbjct: 230 RIAKIICMSKGNLDSIRIMIEWLKSIHVKGEFIAVAFLRSGDNILQRNREELNEIVEYLE 289

Query: 187 TNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTL 246
           +NGVRRDWMGYV+ RCP+LLS S+EEVK+RV F+L MGMN+NDFGTMV+DYPKI+GF + 
Sbjct: 290 SNGVRRDWMGYVVGRCPELLSFSMEEVKSRVDFFLKMGMNQNDFGTMVYDYPKIIGFFSF 349

Query: 247 EEMHQKV--------------------------TYLKEFGLSTEDVGRLLAFRPHLMGCG 280
           + M +KV                           YLKEFGLSTE+VGRLLA++PHLMGC 
Sbjct: 350 QVMEKKVLKALFNTPALRLSFKFIIVLLVLNQINYLKEFGLSTEEVGRLLAYKPHLMGCS 409

Query: 281 IGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPK-------VRFFQDIGV 333
           I ERWKPLVKY YYLG+ ++GM+R+LV+KP+++C DLE TI PK       VRF Q++G+
Sbjct: 410 IEERWKPLVKYFYYLGIPKEGMKRILVVKPILYCIDLEKTIAPKVVELRYNVRFLQEMGI 469

Query: 334 RDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNK 393
            +E I NMLVKFPSLLT SLYKKIRP VIFL+T+AGV+++DIGK +A+ P LLGCSIG K
Sbjct: 470 PNEAIGNMLVKFPSLLTNSLYKKIRP-VIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTK 528

Query: 394 LEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRF 453
           LE N++Y++SLGI+ +QLG MIADFPMLLRYN+D  RPKYRYLRRTM+RPLQDLIEFPRF
Sbjct: 529 LEPNMRYYISLGIRFYQLGEMIADFPMLLRYNVDNLRPKYRYLRRTMIRPLQDLIEFPRF 588

Query: 454 FSYSLEERIIPRHKIMVENRVNFKLRYMLACSNEEFNQKVADKVEGRRLYELGLINEAPH 513
           FSYSLE RIIPRH IMVENRVNFKLRYMLAC++EEF ++V DKVE R  +E GL +E   
Sbjct: 589 FSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEFERRVRDKVERRERFEAGLDSE--D 646

Query: 514 SQTVDDSLRQQD 525
           SQ  D+++  Q+
Sbjct: 647 SQPSDENISDQE 658

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473247|ref|XP_003606908.1| mTERF domain-containing protein [Medicago truncatula] gi|355507963|gb|AES89105.1| mTERF domain-containing protein [Medicago truncatula]

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/502 (70%), Positives = 421/502 (83%), Gaps = 2/502 (0%)

Query: 20  PPSSNDNDGGDVDEELIMKALDIRRQVTAEIFKEAMWRKGKFGITYSTNVADRLPDFIDH 79
           PP S      + +EE+IM+A++IRR+VT E+FKEAM RKGKFGITY+ N+ DRL DFID+
Sbjct: 117 PPLSTLFRRDEKEEEMIMQAIEIRRKVTEEVFKEAM-RKGKFGITYTGNLVDRLGDFIDY 175

Query: 80  VMIKAAALKKLPEFADSSFNVRAKWFIEDSNVVPLIRWLKHNGLSYPKIAKLICMSGGNL 139
           VMI+AA LK+LPE+++S+FN+RAK  IEDS VVPLIRWLKHN LSYP+IAKLI MS G L
Sbjct: 176 VMIEAANLKRLPEYSNSTFNLRAKTVIEDSQVVPLIRWLKHNSLSYPQIAKLILMSRGKL 235

Query: 140 ESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVM 199
           ESIR+  EWLKSV VKGEF+G A+LK+G N+L RS  EL+EIV+YLE NGVRR+WMGYV+
Sbjct: 236 ESIRNRVEWLKSVLVKGEFIGDAMLKSGDNVLLRSDGELDEIVDYLEFNGVRREWMGYVV 295

Query: 200 SRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEF 259
           SRCP+LLS S+EEVKTRV FYLDMG++  DFGTMVFD+PK LG  TLEEM++KV YLKEF
Sbjct: 296 SRCPKLLSYSLEEVKTRVQFYLDMGLDAKDFGTMVFDFPKALGHYTLEEMNRKVDYLKEF 355

Query: 260 GLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLET 319
           GL ++DVG+LLAFRP LM C I E+WKPLVKYLYY G++RDGMRRML IKPMVFC DLE 
Sbjct: 356 GLESKDVGKLLAFRPQLMACSIEEQWKPLVKYLYYYGITRDGMRRMLTIKPMVFCVDLEM 415

Query: 320 TIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCL 379
           TIVPKV+FFQD+GVR++GIA MLVKFP+LLTYSLYKKIRPVVIFLMTKAGV+E +I K +
Sbjct: 416 TIVPKVKFFQDLGVRNDGIAKMLVKFPTLLTYSLYKKIRPVVIFLMTKAGVTEENIPKVI 475

Query: 380 ALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRT 439
           ALGPELLGCSI +KLE NVKY+LSLGI+L QLG MIADFPMLLRYNID+ RPKY YLR+T
Sbjct: 476 ALGPELLGCSIVHKLEGNVKYYLSLGIRLQQLGEMIADFPMLLRYNIDVLRPKYTYLRKT 535

Query: 440 MVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYMLACSNEEFNQKVADKVEG 499
           MVR L+D IEFPRFFSYSLE RIIPRHK++VEN++N KL+ MLAC++EEFN  V + +  
Sbjct: 536 MVRTLKDAIEFPRFFSYSLEGRIIPRHKVLVENQINVKLKCMLACTDEEFNNMVKNMIRK 595

Query: 500 RRLYELGLINE-APHSQTVDDS 520
           R   +  ++ E   H Q+   +
Sbjct: 596 RHKLQSTVMKEDTKHPQSTAQT 617

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465409|ref|XP_004150420.1| PREDICTED: uncharacterized protein LOC101220316 [Cucumis sativus]

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/523 (67%), Positives = 428/523 (81%), Gaps = 10/523 (1%)

Query: 10  PHLRTLFKQQPPSSNDNDGGDVDEELIMKALDIRRQVTAEIFKEAMWRKGKFGITYSTNV 69
           P L++LF+ +     D    + D ++I +AL+IRR+VT+EIFKEAM  KGKFGITY+ N+
Sbjct: 138 PPLQSLFRNR----GDEFCAEDDRKMIRRALEIRRKVTSEIFKEAMG-KGKFGITYTNNL 192

Query: 70  ADRLPDFIDHVMIKAAALKKLPEFADSSFNVRAKWFIEDSNVVPLIRWLKHNGLSYPKIA 129
            + L +FID VMI+AA++K+ PEFA  SFNVRAK  IEDSNVVPLIRWLKHN LSYP+I 
Sbjct: 193 LEWLSEFIDFVMIQAASMKQSPEFAHLSFNVRAKTVIEDSNVVPLIRWLKHNSLSYPQIG 252

Query: 130 KLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNG 189
           KLICMS G LESIR L EWLK +HVKG +LG+ L K GGNILERS EEL+EIV+YLE+NG
Sbjct: 253 KLICMSRGKLESIRRLVEWLKGIHVKGGYLGLTLTKAGGNILERSNEELDEIVDYLESNG 312

Query: 190 VRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEM 249
           VR  WMG+V+SRCP LLS ++EE+KTRV F+L+MGMN  DFGTMVFD+PK+LG  T E+M
Sbjct: 313 VRMVWMGFVISRCPYLLSYNMEELKTRVEFFLNMGMNDKDFGTMVFDFPKVLGQYTFEDM 372

Query: 250 HQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIK 309
           +QKV YLKEFGL  EDVG+LLA++P LM C I ++WKPLVKY YYLG+S+DG++RML IK
Sbjct: 373 NQKVNYLKEFGLENEDVGKLLAYKPQLMNCSIEDKWKPLVKYFYYLGISKDGLKRMLTIK 432

Query: 310 PMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAG 369
           P+VFC DLET IVPKV+FF+D+GVRD+GI+NMLVKFPSLLT+SLYKKIRPVVIFLMTKAG
Sbjct: 433 PVVFCLDLETIIVPKVQFFKDVGVRDDGISNMLVKFPSLLTFSLYKKIRPVVIFLMTKAG 492

Query: 370 VSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIF 429
           V E+D+GK +ALGPEL G SI +KLEVN+KY+LSLGI    LG MI DFPMLLRYNIDI 
Sbjct: 493 VREKDVGKVIALGPELFGYSIVHKLEVNLKYYLSLGIYTRNLGEMITDFPMLLRYNIDIL 552

Query: 430 RPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYMLACSNEEF 489
           RPKY+YLRRTMVRPLQDLI+FPRFFSYSLE RIIPRH+++VENR+N  LR MLAC++EEF
Sbjct: 553 RPKYQYLRRTMVRPLQDLIDFPRFFSYSLEGRIIPRHQVLVENRININLRSMLACTDEEF 612

Query: 490 NQKVADKVEGRRLYELGLINEA---PHSQTVDDSLRQQDAVDY 529
             KVAD VE R+ +E G I+ +   PH+   +DS+      D+
Sbjct: 613 KNKVADIVEKRQRFESGNIDGSLSIPHA--TNDSINSSGLDDF 653

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525524|ref|XP_004169767.1| PREDICTED: uncharacterized LOC101220316 [Cucumis sativus]

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/523 (67%), Positives = 428/523 (81%), Gaps = 10/523 (1%)

Query: 10  PHLRTLFKQQPPSSNDNDGGDVDEELIMKALDIRRQVTAEIFKEAMWRKGKFGITYSTNV 69
           P L++LF+ +     D    + D ++I +AL+IRR+VT+EIFKEAM  KGKFGITY+ N+
Sbjct: 138 PPLQSLFRNR----GDEFCAEDDRKMIRRALEIRRKVTSEIFKEAMG-KGKFGITYTNNL 192

Query: 70  ADRLPDFIDHVMIKAAALKKLPEFADSSFNVRAKWFIEDSNVVPLIRWLKHNGLSYPKIA 129
            + L +FID VMI+AA++K+ PEFA  SFNVRAK  IEDSNVVPLIRWLKHN LSYP+I 
Sbjct: 193 LEWLSEFIDFVMIQAASMKQSPEFAHLSFNVRAKTVIEDSNVVPLIRWLKHNSLSYPQIG 252

Query: 130 KLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNG 189
           KLICMS G LESIR L EWLK +HVKG +LG+ L K GGNILERS EEL+EIV+YLE+NG
Sbjct: 253 KLICMSRGKLESIRRLVEWLKGIHVKGGYLGLTLTKAGGNILERSNEELDEIVDYLESNG 312

Query: 190 VRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEM 249
           VR  WMG+V+SRCP LLS ++EE+KTRV F+L+MGMN  DFGTMVFD+PK+LG  T E+M
Sbjct: 313 VRMVWMGFVISRCPYLLSYNMEELKTRVEFFLNMGMNDKDFGTMVFDFPKVLGQYTFEDM 372

Query: 250 HQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIK 309
           +QKV YLKEFGL  EDVG+LLA++P LM C I ++WKPLVKY YYLG+S+DG++RML IK
Sbjct: 373 NQKVNYLKEFGLENEDVGKLLAYKPQLMNCSIEDKWKPLVKYFYYLGISKDGLKRMLTIK 432

Query: 310 PMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAG 369
           P+VFC DLET IVPKV+FF+D+GVRD+GI+NMLVKFPSLLT+SLYKKIRPVVIFLMTKAG
Sbjct: 433 PVVFCLDLETIIVPKVQFFKDVGVRDDGISNMLVKFPSLLTFSLYKKIRPVVIFLMTKAG 492

Query: 370 VSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIF 429
           V E+D+GK +ALGPEL G SI +KLEVN+KY+LSLGI    LG MI DFPMLLRYNIDI 
Sbjct: 493 VREKDVGKVIALGPELFGYSIVHKLEVNLKYYLSLGIYTRNLGEMITDFPMLLRYNIDIL 552

Query: 430 RPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYMLACSNEEF 489
           RPKY+YLRRTMVRPLQDLI+FPRFFSYSLE RIIPRH+++VENR+N  LR MLAC++EEF
Sbjct: 553 RPKYQYLRRTMVRPLQDLIDFPRFFSYSLEGRIIPRHQVLVENRININLRSMLACTDEEF 612

Query: 490 NQKVADKVEGRRLYELGLINEA---PHSQTVDDSLRQQDAVDY 529
             KVAD VE R+ +E G I+ +   PH+   +DS+      D+
Sbjct: 613 KNKVADIVEKRQRFESGNIDGSLSIPHA--TNDSINSSGLDDF 653

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	556
TAIR|locus:2049329	641	EMB2219 "embryo defective 2219	0.910	0.789	0.689	1.6e-196
TAIR|locus:2139394	541	BSM "AT4G02990" [Arabidopsis t	0.570	0.585	0.281	4.6e-41
TAIR|locus:2051814	507	AT2G44020 "AT2G44020" [Arabido	0.627	0.688	0.259	1.9e-37
TAIR|locus:2207420	591	AT1G78930 "AT1G78930" [Arabido	0.615	0.578	0.286	1.1e-30
TAIR|locus:505006461	493	MDA1 "AT4G14605" [Arabidopsis	0.521	0.588	0.259	3.4e-26
TAIR|locus:2039240	333	EMB3114 "AT2G36000" [Arabidops	0.415	0.693	0.313	2.7e-21
TAIR|locus:2062328	303	AT2G34620 "AT2G34620" [Arabido	0.431	0.792	0.276	4.2e-20
TAIR|locus:2056745	283	EMB93 "EMBRYO DEFECTIVE 93" [A	0.419	0.823	0.283	3.8e-18
TAIR|locus:2162092	496	AT5G55580 "AT5G55580" [Arabido	0.501	0.562	0.264	1.1e-17
TAIR|locus:2153433	500	PTAC15 "AT5G54180" [Arabidopsi	0.570	0.634	0.253	4.3e-16

TAIR|locus:2049329 EMB2219 "embryo defective 2219" [Arabidopsis thaliana (taxid:3702)]

 Score = 1903 (674.9 bits), Expect = 1.6e-196, P = 1.6e-196
 Identities = 351/509 (68%), Positives = 439/509 (86%)

Query:    23 SNDNDGGDVDEELIMKALDIRRQVTAEIFKEAMWRKGKFGITYSTNVADRLPDFIDHVMI 82
             S+ +D G+ + E+I+KAL+IRR+VT EI KE++ RKG+FGITY+TNV DRL DF+DHVMI
Sbjct:   126 SDGDDDGESEREMIVKALEIRRKVTKEIIKESLVRKGRFGITYATNVTDRLGDFVDHVMI 185

Query:    83 KAAALKKLPEFADSSFNVRAKWFIEDSNVVPLIRWLKHNGLSYPKIAKLICMSGGNLESI 142
             +AAALK+LPEF++S FN+RA+  IEDSN VPL+RWLKH+ LSY +IAK+ICMS GNL+SI
Sbjct:   186 QAAALKRLPEFSESRFNLRARTVIEDSNFVPLVRWLKHHELSYNRIAKIICMSKGNLDSI 245

Query:   143 RHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSRC 202
             R + EWLKS+HVKGEF+ VA L++G NIL+R+ EELNEIVEYLE+NGVRRDWMGYV+ RC
Sbjct:   246 RIMIEWLKSIHVKGEFIAVAFLRSGDNILQRNREELNEIVEYLESNGVRRDWMGYVVGRC 305

Query:   203 PQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLS 262
             P+LLS S+EEVK+RV F+L MGMN+NDFGTMV+DYPKI+GF + + M +K+ YLKEFGLS
Sbjct:   306 PELLSFSMEEVKSRVDFFLKMGMNQNDFGTMVYDYPKIIGFFSFQVMEKKINYLKEFGLS 365

Query:   263 TEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIV 322
             TE+VGRLLA++PHLMGC I ERWKPLVKY YYLG+ ++GM+R+LV+KP+++C DLE TI 
Sbjct:   366 TEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVKPILYCIDLEKTIA 425

Query:   323 PKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALG 382
             PKVRF Q++G+ +E I NMLVKFPSLLT SLYKKIRPVVIFL+T+AGV+++DIGK +A+ 
Sbjct:   426 PKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVIAMD 485

Query:   383 PELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVR 442
             P LLGCSIG KLE N++Y++SLGI+ +QLG MIADFPMLLRYN+D  RPKYRYLRRTM+R
Sbjct:   486 PALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNVDNLRPKYRYLRRTMIR 545

Query:   443 PLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYMLACSNEEFNQKVADKVEGRRL 502
             PLQDLIEFPRFFSYSLE RIIPRH IMVENRVNFKLRYMLAC++EEF ++V DKVE R  
Sbjct:   546 PLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEFERRVRDKVERRER 605

Query:   503 YELGLINEAPHSQTVDDSLRQQDAVDYTD 531
             +E GL +E   SQ  D+++  Q+ + ++D
Sbjct:   606 FEAGLDSE--DSQPSDENISDQE-IAFSD 631

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2139394 BSM "AT4G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 90/320 (28%), Positives = 170/320 (53%)

Query:   181 IVEYLETNGVRRDWMGYVMSRCPQLLSQSIE-EVKTRVHFYLDMGMNKNDFGTMVFDYPK 239
             +++YL   GVR+      + R PQ+L  S+  ++   V +   + +  +D   ++  YP+
Sbjct:   182 VLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVIDLAPVVKYLQGLDIKPSDVPRVLERYPE 241

Query:   240 ILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSR 299
             +LGF     M   V YL   G++  ++G +L   P ++G  +    KPLV+YL  LG+ R
Sbjct:   242 VLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEILGMRVARIIKPLVEYLEVLGIPR 301

Query:   300 DGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRP 359
                 R++  +P +  F+L+ T+ P V+  QD  VR+  + +++ ++P ++   L  K+  
Sbjct:   302 LAAARLIEKRPHILGFELDDTVKPNVQILQDFNVRETSLPSIIAQYPEIIGIDLKPKLDT 361

Query:   360 VVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFP 419
                 L +   ++  D+G  +   P+ +  S    L+ ++ +    G  + Q   M+   P
Sbjct:   362 QRKLLCSAIHLNPEDLGSLIERMPQFVSLSESPMLK-HIDFLTKCGFSIDQTREMVIGCP 420

Query:   420 MLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLR 479
              +L  N+ I +  + Y ++ M RPLQDL++FP FF+Y LE  + PRHK +++  +   L 
Sbjct:   421 QVLALNLGIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLESTVKPRHKKIIKKGIKCSLA 480

Query:   480 YMLACSNEEFNQKVA-DKVE 498
             +ML CS+E+F Q+++ D ++
Sbjct:   481 WMLNCSDEKFEQRMSYDTID 500

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008380 "RNA splicing" evidence=IMP

GO:0009536 "plastid" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0032502 "developmental process" evidence=IMP

GO:0042793 "transcription from plastid promoter" evidence=IMP

GO:0042794 "rRNA transcription from plastid promoter" evidence=IMP

TAIR|locus:2051814 AT2G44020 "AT2G44020" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 93/359 (25%), Positives = 177/359 (49%)

Query:   176 EELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIE-EVKTRVHFYLDMGMNKNDFGTMV 234
             + L  ++ YLE  G+ R  +G  +   PQ+L  S+  E+   V F   + + K D G ++
Sbjct:   142 KNLIPVLAYLEKIGISRSKLGEFVKNYPQVLHASVVVELAPVVKFLRGLDVEKQDLGYVL 201

Query:   235 FDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYY 294
               YP++LGF     M   V YL   G+S  D+G ++   P+L+G  +G   KPLV YL  
Sbjct:   202 MKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYLLGMRVGTMIKPLVDYLIS 261

Query:   295 LGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLY 354
             +G+ +  + RML  +  +  ++LE T+ P V      GV+ E +  ++ ++P +L   + 
Sbjct:   262 IGLPKKIVARMLEKRSYIVGYNLEETVKPNVDCLISFGVKKELLPLLIAQYPQILGLPVK 321

Query:   355 KKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAM 414
              K+     F   K  +      + +   P+++     N +   +++ L    ++  +  M
Sbjct:   322 AKMSTQQYFFSLKLKIDPEGFARVVEKMPQIVSLK-QNVIMKPIEFLLGRAFQVEDIAKM 380

Query:   415 IADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRV 474
             +   P +L   +++ +  Y + +  M RP+++L+E+P +F+YSLE RI PR++ +    +
Sbjct:   381 VVRCPQILCSRVELMKNSYYFYKTEMGRPMKELVEYPEYFTYSLESRIKPRYQKLQSKGI 440

Query:   475 NFKLRYMLACSNEEFNQKVADK-----VEGRRLYELGLINEAPHSQTVDDSLRQQDAVD 528
                L + L CS++ F +++         EG   +++G   E P  + V D   ++D  D
Sbjct:   441 RSSLNWFLNCSDQRFEERLQGNFIDPDTEGPT-FDMGGKLEMPGGEIVTDE--EEDESD 496

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2207420 AT1G78930 "AT1G78930" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 102/356 (28%), Positives = 185/356 (51%)

Query:   139 LESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIE-ELNEIVEYLETNGVRRDWMGY 197
             +E+ R   + L SV     FL    L++   +L  S E ++  +VE+LE+ G+ +  +G 
Sbjct:   228 IEARRGGLDMLGSVDASFRFL----LESFPRLLLLSEENDMKPMVEFLESIGIPKYCLGK 283

Query:   198 VMSRCPQLLSQSIEEVKTRVHFYLD-MGMNKNDFGTMVFDYPKILGFLTLEEMHQKV-TY 255
             V+   P ++    EE+K RV   ++ + +   D G ++  YP IL   +++E +  + ++
Sbjct:   284 VLLLYPPIMLGKTEEIKRRVATAMEKVSVVNKDSGKLLLKYPWILS-PSIQENYSHIGSF 342

Query:   256 LKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKP-MVFC 314
                  +   D+   +   P L+GC      + +VK    LGV    M +++   P ++ C
Sbjct:   343 FYSESVLKMDIDHAIRRWPLLLGCS-ASNMEMMVKEFDKLGVRDKRMGKVIPKMPQLLLC 401

Query:   315 FDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERD 374
                E   V  V F +D+G + E +  +L + P +   S+ K ++  +IFL T+ GVS   
Sbjct:   402 KPQEFLKV--VCFLEDLGFQKEIVGQILCRCPEIFGCSIEKTLQKKLIFL-TRFGVSTTH 458

Query:   375 IGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNID-IFRPKY 433
               + +   PE L       +   +KY + +GI   ++  MI  F  +L Y+ID + RPK+
Sbjct:   459 FPRIIKKYPEFLIYDADKTVLPRLKYLMEIGISEREIAFMIRKFSPILGYSIDKVLRPKF 518

Query:   434 RYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYMLACSNEEF 489
              +L  +M +P++++IE+PR+FSYSLE+RI PR +++    +   L+ ML  ++EEF
Sbjct:   519 EFLVNSMEKPVREVIEYPRYFSYSLEKRIKPRFRVLKGRNIECTLQEMLGKNDEEF 574

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:505006461 MDA1 "AT4G14605" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 3.4e-26, P = 3.4e-26
 Identities = 78/301 (25%), Positives = 158/301 (52%)

Query:   199 MSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLE-EMHQKVTYLK 257
             +SR  +L ++    ++ +  + LD+G+N     T+   +     + +L+ ++   V +L 
Sbjct:   184 VSRVSELDTEGA--LRPQTLYLLDLGLNLEQIKTITRKFAAF-PYYSLDGKIKPVVEFLL 240

Query:   258 EFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDL 317
             + G+   D+  +L  RP + G  + +  KP + +L  LG+ ++   +++   P +  +  
Sbjct:   241 DLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAILTYSR 300

Query:   318 ETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGK 377
             +  +   V F    G+ +E I  +L + P++++YS+  K+RP + +  +   V   D+  
Sbjct:   301 QK-LTSTVEFLSQTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRS-LNV---DVAV 355

Query:   378 CLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNI-DIFRPKYRYL 436
              L   P+  G SI + L+   ++FL  G  L ++G MI+ +  L  +++ +   PK+ Y 
Sbjct:   356 LLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWDYF 415

Query:   437 RRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYMLACSNEEFNQKVADK 496
             + TM  P  +L++FP+FF YSL+ERI PR++++  + V   L  +L+ S  EF + V  K
Sbjct:   416 Q-TMDYPKSELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEKVVKKK 474

Query:   497 V 497
             +
Sbjct:   475 M 475

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2039240 EMB3114 "AT2G36000" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 2.7e-21, P = 2.7e-21
 Identities = 78/249 (31%), Positives = 124/249 (49%)

Query:   245 TLEE-MHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYY--LGVSRDG 301
             TLE  +H+K+ YL   G+   D   L+   P L+   +    + +V Y+    +  +   
Sbjct:    68 TLESSIHEKLIYLDSLGI---DFLTLINRHPPLLSTALSAV-ESVVDYMTTPPINFTLQD 123

Query:   302 MRRMLVIKPMVFCFDLETTIVPKVRFF-QDIGVRDE-GIANMLVKFPSLLTYSLYKKIRP 359
              RR++ + P +    L +  +P + F  +++GV     +   L + P LL  S+  ++RP
Sbjct:   124 FRRLVSMCPELLTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRP 183

Query:   360 VVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFP 419
              + FL  + G+   D  K       LL CS+ NKL   + YF  LG       AM   FP
Sbjct:   184 TLYFLQ-RIGIL--DPHK----HTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFP 236

Query:   420 MLLRYNI-DIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKL 478
              L  Y+I + + PK +YL   M R +++++EFP++FS+SLE RI PRH+      V F L
Sbjct:   237 QLFNYSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPL 296

Query:   479 RYMLACSNE 487
               ML  +NE
Sbjct:   297 PVMLK-TNE 304

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2062328 AT2G34620 "AT2G34620" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 4.2e-20, P = 4.2e-20
 Identities = 69/250 (27%), Positives = 128/250 (51%)

Query:   244 LTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMR 303
             +TL+ M +K+  L+  G+   D G+ L+  P L    + +  + ++ +L   G+  + + 
Sbjct:    51 VTLQ-MKEKILCLELMGI---DSGKALSLNPCLCSAPL-DSIQSVLHFLQSKGIYPNDLP 105

Query:   304 RMLVIKPMVFCFDLETTIVPKVRFFQ-DIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVI 362
             R+L + P +   D+ T + P   F   D+ V +     ++ K P LL  S+  +++P + 
Sbjct:   106 RILGMCPKILTSDVRTELYPVFMFLSNDLHVPENAFRRVIKKCPRLLISSVEDQLKPALF 165

Query:   363 FLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLL 422
             +L  + G+  +D+       P LL  S+ + L   +++  S+G    +   MI   P L 
Sbjct:   166 YLQ-RLGL--KDLEALAYQDPILLVSSVEHTLIPKLRFLESIGFSRPEAIGMILRCPALF 222

Query:   423 RYNIDI-FRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYM 481
              ++I+  F+PK  Y    +   L++L EFP++F++SLE+RI PRH   +E  +   L  M
Sbjct:   223 TFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLM 282

Query:   482 LACSNEEFNQ 491
             L  ++EEF Q
Sbjct:   283 LKSTDEEFEQ 292

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

TAIR|locus:2056745 EMB93 "EMBRYO DEFECTIVE 93" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 3.8e-18, P = 3.8e-18
 Identities = 69/243 (28%), Positives = 119/243 (48%)

Query:   251 QKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKP 310
             +K+ YL++  +   D  + L   P L    I      +   L   G+SR  + R+L + P
Sbjct:    34 EKLIYLQDLNV---DPHKALRVNPSLRSAPISSVVS-VETLLSSTGLSRPAVGRILDMFP 89

Query:   311 MVFCFDLETTIVPKVRFFQ-DIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAG 369
              +   D E+ I+P +RF   +I + ++ I   + + P LL  S+  ++RP + FL T  G
Sbjct:    90 DLLTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKT-LG 148

Query:   370 VSERDIGKCLALGPELLGCSIGNKLEVNVKYFLS-LGIKLHQLGAMIADFPMLLRYNIDI 428
                RD     +    LL  ++   L   ++Y    LG    ++  M+   P LL Y++D 
Sbjct:   149 FVGRDT--ITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDN 206

Query:   429 -FRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYMLACSNE 487
                PK  +    M   +++L  FP++FS+SLE +I PRH+++ E+ +   L  ML  S+ 
Sbjct:   207 NLVPKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDG 266

Query:   488 EFN 490
             +FN
Sbjct:   267 QFN 269

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0071452 "cellular response to singlet oxygen" evidence=IGI

TAIR|locus:2162092 AT5G55580 "AT5G55580" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 81/306 (26%), Positives = 147/306 (48%)

Query:   237 YPKILGFLTLE-EMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGE-RWKPLVKYLYY 294
             YP++   + ++ +    + YL  FGL      ++  +  H+    I     +  + YL  
Sbjct:   171 YPRLAEEIDIDPKCVPLLDYLSTFGLKESHFVQM--YERHMPSLQINVFSAQERLDYLLS 228

Query:   295 LGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLY 354
             +GV    ++RML+ +P +  + +E  +   + F   +G+ +  I  ++   PSL +YS+ 
Sbjct:   229 VGVKHRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVE 288

Query:   355 KKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEV--NVKY-FLS--LGIKLH 409
               +RP + +L+ + G+ E D+GK + L P++L      +L++  N +Y FLS  LG    
Sbjct:   289 NSLRPTIRYLIEEVGIKETDVGKVVQLSPQILV----QRLDITWNTRYMFLSKELGAPRD 344

Query:   410 QLGAMIADFPMLLRYNIDI-FRPKYRYLRRT-MVRP--LQDLIEFPRFFSYSLEERIIPR 465
              +  M+   P LL Y+ID  F P+  +LR   M     L+ L    +  S SLE+ + P+
Sbjct:   345 SVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPK 404

Query:   466 HKIMVE---NRVNFKLRYMLACSNEEFNQKVADKVEGRRLYELGLINEAPH--SQTV--D 518
             +  +V    N V+   +Y +  S    +Q++  +   R L EL  + + P   S  V  D
Sbjct:   405 YMYLVNELNNEVHILTKYPMYLSLS-LDQRIRPR--HRFLVELKKVRKGPFPLSSLVPND 461

Query:   519 DSLRQQ 524
             +S  QQ
Sbjct:   462 ESFCQQ 467

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2153433 PTAC15 "AT5G54180" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 4.3e-16, P = 4.3e-16
 Identities = 86/339 (25%), Positives = 160/339 (47%)

Query:   169 NILERSIE-ELNEIVEYLETNGVRRDWMGYVMSRC--PQLLSQ-SIEEVKTRVHFYLDMG 224
             ++++ SI    N+ V  L  +G+ ++ + +V+++    +LL Q S+E+++  + F    G
Sbjct:   171 SVVDTSILLSFNQKVRLLLLHGIPKEKISHVLNKVYLNKLLYQKSVEDIERLISFLEPFG 230

Query:   225 MNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTED---VGRLLAFRPHLMGCGI 281
                   G ++   P IL      ++  +V +++   LS ED    G +L   P ++   +
Sbjct:   231 ----GIG-IIARRPVILNSDLDSQLIPRVDFIRN--LSGEDDFATGTVLRRLPAILSYSV 283

Query:   282 GERWKPLVKYLY-YLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIAN 340
              E     V++L  + G++ + + +++ + P V     E  + P++ F ++ G    G+  
Sbjct:   284 -EHMNGQVEFLKSFAGLTSEQVFKIVHVFPNVISTSKERKLRPRIEFLKECGFDSPGMFK 342

Query:   341 MLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKY 400
              L K P +L  S    +   + FL+ K G   R      A+G  +   S  N   V +  
Sbjct:   343 FLSKAPLILALS-ENNLSHKLGFLV-KIGYKHRTKELAFAMGA-VTRTSSDNMQRV-IGL 398

Query:   401 FLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEE 460
             +LS G+    + AM    P +L+YN      K  YL   M R +++L+ FP F  Y L+ 
Sbjct:   399 YLSYGLSFEDILAMSTKHPQVLQYNYTSLEEKLEYLIEYMGREVEELLAFPAFLGYKLDS 458

Query:   461 RIIPRHKIMVENR-VNFKLRYMLACSNEEFNQKVADKVE 498
             RI  R++  +++R  N  L  +L  S E F+ K AD +E
Sbjct:   459 RIKHRYEEKLKSRGENMSLNKLLTVSAERFS-KAADNIE 496

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	556
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	3e-53
pfam02536	345	pfam02536, mTERF, mTERF	2e-41
pfam02536	345	pfam02536, mTERF, mTERF	1e-12
pfam02536	345	pfam02536, mTERF, mTERF	2e-06

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score =  187 bits (478), Expect = 3e-53
 Identities = 102/346 (29%), Positives = 185/346 (53%), Gaps = 8/346 (2%)

Query: 181 IVEYLETNGVRRDWMGYVMSRCPQLLSQSIE-EVKTRVHFYLDMGMNKNDFGTMVFDYPK 239
           +++YLE  GV R  +  ++ R PQ+L  S+  ++   V +   + + + D   ++  YP+
Sbjct: 127 VLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPE 186

Query: 240 ILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSR 299
           +LGF     M   V YL   G++  D+G +L   P ++G  +G   KP V YL  LG+ R
Sbjct: 187 LLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPR 246

Query: 300 DGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRP 359
             + R+L  +P +  FDLE T+ P V    + GVR E + +++ ++P +L   L  K+  
Sbjct: 247 LAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAE 306

Query: 360 VVIFLMTKAGVSERDIGKCLALGPELLGCSIG-NKLEVNVKYFLSLGIKLHQLGAMIADF 418
              +L +K  +   D G+ +   P+++  S+  N    +V++    G     +  M+   
Sbjct: 307 QQYWLTSKLKIDPEDFGRVIEKLPQIV--SLNRNVALKHVEFLRGRGFSAQDVAKMVVRC 364

Query: 419 PMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKL 478
           P +L  N++I +P   + ++ M RPL++L+EFP +F+Y LE RI PR++ + +  +   L
Sbjct: 365 PQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAKKGIKCSL 424

Query: 479 RYMLACSNEEFNQKVA-DKVEGRR---LYELGLINEAPHSQTVDDS 520
            + L CS+++F Q+++ D +EG     L+ +G   E P S++V D 
Sbjct: 425 AWFLNCSDDKFEQRMSGDFIEGEEMEPLFSMGGKLEMPGSESVSDE 470

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score =  152 bits (385), Expect = 2e-41
 Identities = 79/316 (25%), Positives = 145/316 (45%), Gaps = 13/316 (4%)

Query: 182 VEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRV-HFYLDMGMNKNDFGTMVFDYPKI 240
           +++L++ G  +  +  ++S  P++L +   +  + V  F   + +   D  + +  YP+ 
Sbjct: 37  LQFLQSRGASKSELTKIVSTVPKILGKKGVKSISSVYDFLKKIIVADLDKSSKLEKYPES 96

Query: 241 LGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRD 300
           L         + V+ L+E G+  + +  LL  RP    CG  E ++  +K +  +G    
Sbjct: 97  LPQGNNGNKIRNVSVLRELGVPPKLLFSLLISRPRP-VCGK-EVFEESLKKVVEMGFDPT 154

Query: 301 GMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPV 360
             +R++  +P +  +  + TI P V F + +G   E +  +L K P LL  S  KK++  
Sbjct: 155 TFKRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFSVEDVWAILKKCPELLGSSEKKKLQTQ 214

Query: 361 VIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPM 420
            I            I K               K+   +++ L LG    ++  M+   P 
Sbjct: 215 EILKTCGLLEFLSVIKK-----MPQFVSYSEQKILNKIEFLLGLGFSREEIAKMVKRCPQ 269

Query: 421 LLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPR---HKIMVENRVNFK 477
           LL  +++  + K  +L + M  PL++L+EFP+ F YSLE+RI PR    K ++    +  
Sbjct: 270 LLGLSVEKVKKKTEFLVKEMNWPLKELVEFPQVFGYSLEKRIKPRCNVVKALMSKGKSIL 329

Query: 478 --LRYMLACSNEEFNQ 491
             L  ML C++EEF Q
Sbjct: 330 PSLSSMLKCTDEEFLQ 345

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 39/185 (21%), Positives = 73/185 (39%), Gaps = 9/185 (4%)

Query: 176 EELNEIVEYLETNGVRRDWMGYVMSRCP-QLLSQSIEEVKTRVHFYLDMGMNKNDFGTMV 234
           E   E ++ +   G        V+++ P  LL  S + +K  V F   +G +  D   ++
Sbjct: 137 EVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFSVEDVWAIL 196

Query: 235 FDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYY 294
              P++LG     E  +  T          +   ++   P        ++    +++L  
Sbjct: 197 KKCPELLG---SSEKKKLQTQEILKTCGLLEFLSVIKKMP-QFVSYSEQKILNKIEFLLG 252

Query: 295 LGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLY 354
           LG SR+ + +M+   P +    +E  +  K  F              LV+FP +  YSL 
Sbjct: 253 LGFSREEIAKMVKRCPQLLGLSVE-KVKKKTEFLVK---EMNWPLKELVEFPQVFGYSLE 308

Query: 355 KKIRP 359
           K+I+P
Sbjct: 309 KRIKP 313

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 37/168 (22%), Positives = 58/168 (34%), Gaps = 24/168 (14%)

Query: 310 PMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAG 369
            ++   D E  + PK++F Q  G     +  ++   P +L     K I  V  F + K  
Sbjct: 23  LLLGA-DAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILGKKGVKSISSVYDF-LKKII 80

Query: 370 VSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKL----------HQLGAMIADFP 419
           V++ D    L   PE L          NV     LG+             +       F 
Sbjct: 81  VADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLLFSLLISRPRPVCGKEVFE 140

Query: 420 MLLRYNIDI-FRPKYRYLRRTMVRPLQDLIEF-PRFFSYSLEERIIPR 465
             L+  +++ F P       T  R    +I   PR   YS ++ I P 
Sbjct: 141 ESLKKVVEMGFDPT------TFKR----VIAKRPRLLLYSSDKTIKPN 178

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	556
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
KOG1267	413	consensus Mitochondrial transcription termination	99.97
KOG1267	413	consensus Mitochondrial transcription termination	99.87
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.54
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.39
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	91.67
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	89.62
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	87.69
PRK14135	263	recX recombination regulator RecX; Provisional	87.45
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	87.37
PRK14136	309	recX recombination regulator RecX; Provisional	82.55

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.4e-71  Score=599.94  Aligned_cols=409  Identities=26%  Similarity=0.533  Sum_probs=391.4

Q ss_pred             hHHHHHHHCCCChHHHHHHHhhccCChhhHHHHHHHHHhCCCChhHHHHHHHhhCCccccCChh-hHHHHHHHHHhCCCC
Q 008728          113 PLIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIE-ELNEIVEYLETNGVR  191 (556)
Q Consensus       113 ~~~~~L~~~G~s~~~i~~~~~~~~~~~~~l~~~l~~L~~lGls~~~i~~il~r~~P~lL~~s~~-~l~~~l~~L~s~G~~  191 (556)
                      ..++||.++|++++++.++..  ..+.+.++++++||+++|++.++|+     .+|.+|.++++ ++.|+++||+++|++
T Consensus        65 ~~~~~L~~lgi~~~~l~~~~~--p~~~~~~~~~l~~L~s~G~~~~~i~-----~~P~iL~~~v~~~l~Pvl~fL~~lG~s  137 (487)
T PLN03196         65 KVLDFLRGIGIDPDELDGLEL--PSTVDVMRERVEFLHKLGLTIEDIN-----EYPLVLGCSVKKNMIPVLDYLEKLGVT  137 (487)
T ss_pred             HHHHHHHHcCCCchhhhccCC--CccHHHHHHHHHHHHHcCCChHHhc-----cCcHHhhcCHhhhhHHHHHHHHHcCCC
Confidence            478999999999999988765  4688999999999999999999997     39999999985 799999999999999


Q ss_pred             hhhHHHHHhhCCCcccccHH-HHHHHHHHHHHcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHHcCCChHHHHHHH
Q 008728          192 RDWMGYVMSRCPQLLSQSIE-EVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLL  270 (556)
Q Consensus       192 ~~~i~~lv~~~P~iL~~s~~-~l~~~v~fL~~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~lG~~~~~I~~ll  270 (556)
                      ..+|++++.++|.+|.++++ ++.|+++||+++|++++++++++.++|++|+++.++++.++++||+++|++.++|++++
T Consensus       138 ~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il  217 (487)
T PLN03196        138 RSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPML  217 (487)
T ss_pred             HHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            99999999999999999997 79999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCcccccCcccchHHHHHHHHHcCCChhhHHHHHhhCCcccccCccccchhHHHHHHHhCCChhhHhhhhhhcCcccc
Q 008728          271 AFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLT  350 (556)
Q Consensus       271 ~~~P~lL~~s~e~~l~~~v~~L~~lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~~lG~s~~~i~~~i~~~P~iL~  350 (556)
                      .++|++|+++++++++|+++||.++|++.++|.+++.++|++|+++++++++|++++|+++|++.+++..++.++|.+++
T Consensus       218 ~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~  297 (487)
T PLN03196        218 TRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILG  297 (487)
T ss_pred             HhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeE
Confidence            99999999999999999999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             chhhhhhHHHHHHHHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHHHHHhCCCHHHHHHHHhhcccccccchhhHH
Q 008728          351 YSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFR  430 (556)
Q Consensus       351 ~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~L~~lG~~~~ei~~ml~~~P~lL~~s~e~l~  430 (556)
                      +++++++.+++.|+.+.+|++++++..+++++|+++++|. +++.+|++||+++||+.++++.|++++|++|++|.++|+
T Consensus       298 ~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lSe-~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~~~l~  376 (487)
T PLN03196        298 LDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNR-NVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMK  376 (487)
T ss_pred             ecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhcccH-HHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccHHHHH
Confidence            9999999999999999999999999999999999999995 789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCChhHHhhcCcccccCcccccHHHHHHHHHCCCCcccccccccChHHHHHHHHhhhhch----hhhhhc
Q 008728          431 PKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYMLACSNEEFNQKVADKVEGR----RLYELG  506 (556)
Q Consensus       431 ~k~~fL~~~mg~~~~~i~~~P~~L~ySLe~RI~pR~~~L~~~Gl~~~l~~~L~~sd~~F~~~~~~~~e~~----~~f~~~  506 (556)
                      +|++||+++||+++++|++||+||+||||+||+|||++|+++|+.+++.++|+|||+.|+++|+..|.+-    +.|.+|
T Consensus       377 ~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~~~L~~kGl~~sL~~~L~~sd~~F~~r~v~~y~e~~~~~~~~~~~  456 (487)
T PLN03196        377 PSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDKFEQRMSGDFIEGEEMEPLFSMG  456 (487)
T ss_pred             HHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHHHHHHHcCCCCCHHHHhccCHHHHHHHHhhhcccccccCCCcccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999988543    689999


Q ss_pred             cccCCCCCCccchhhccCCcccc
Q 008728          507 LINEAPHSQTVDDSLRQQDAVDY  529 (556)
Q Consensus       507 ~~~e~~~~~~~~~~~~~~~~~~~  529 (556)
                      +..|.|+++.++|+++++||+|.
T Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~  479 (487)
T PLN03196        457 GKLEMPGSESVSDEEDDDDDDEV  479 (487)
T ss_pred             CcccCCCCccccCcccccchHHH
Confidence            99999999999988777666664

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=8.1e-53  Score=440.65  Aligned_cols=337  Identities=31%  Similarity=0.566  Sum_probs=267.7

Q ss_pred             HHHHhCCCChhHHHHHHHhhCCccccCChh-hHHHHHHHHHhCCCChhhHHHHHhhCCCcccccH-HHHHHHHHHHHHcC
Q 008728          147 EWLKSVHVKGEFLGVALLKTGGNILERSIE-ELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSI-EEVKTRVHFYLDMG  224 (556)
Q Consensus       147 ~~L~~lGls~~~i~~il~r~~P~lL~~s~~-~l~~~l~~L~s~G~~~~~i~~lv~~~P~iL~~s~-~~l~~~v~fL~~lG  224 (556)
                      .+|+++||+.++|.+++.+ +|.++.++++ ++.|+++||.+.|++..+++++++++|.+|..+. +++.++++||+++|
T Consensus         2 ~~~~~~gf~~~~i~~~i~~-~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~   80 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRR-YPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIG   80 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH--H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTS
T ss_pred             hHHHHcCCCHHHHHHHHHh-CCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHc
Confidence            5789999999999999997 9999998874 7999999999999999999999999999999995 57999999999999


Q ss_pred             CChhHHHHHHHhCCcccccchhhhHHHHHHHHHHcCCChHHHHHHHhhCCcccccCcccchHHHHHHHHHcCCChhhHHH
Q 008728          225 MNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRR  304 (556)
Q Consensus       225 ~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~lG~~~~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~~lGls~~~i~~  304 (556)
                      ++++++.+++.++|++|..+...++.+++.+|+++|++.+.+.+++..+|.++...  +++++.++++.++|++++++.+
T Consensus        81 ~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~  158 (345)
T PF02536_consen   81 LSDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGR  158 (345)
T ss_dssp             S-HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCC
T ss_pred             CCHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhcc
Confidence            99999999999999999987778999999999999999998889999888877766  5899999999999999999999


Q ss_pred             HHhhCCcccccCccccchhHHHHHHHhCCChhhHhhhhhhcCccccchhhhhhHHHHHHHHHHcCCCcchHhHHHhhccc
Q 008728          305 MLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPE  384 (556)
Q Consensus       305 il~~~P~iL~~~~e~~l~~kv~~L~~lG~s~~~i~~~i~~~P~iL~~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~  384 (556)
                      ++..+|.++..+.+++++++++||+++|++.+++.+++.++|+++..++++.++++..++ ...|....   .++.++|+
T Consensus       159 vi~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~-~~~~~~~~---~~i~~~p~  234 (345)
T PF02536_consen  159 VIAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLL-SSGGVEEE---RVIKKFPQ  234 (345)
T ss_dssp             CHHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC-----------------------------
T ss_pred             cccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceeccccccccccccccc-cccccccc---cccccccc
Confidence            999999888888888899999999999999999999999999999999998777765554 45554444   88899999


Q ss_pred             eeeccchhhHHHHHHHHHHhCCCHHHHHHHHhhcccccccchhhHHHHHHHHHHHhCCChhHHhhcCcccccCcccccHH
Q 008728          385 LLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIP  464 (556)
Q Consensus       385 iL~~s~~~~l~~kv~~L~~lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~ySLe~RI~p  464 (556)
                      ++.++ .+++.++++||+++||+.++++.|+.++|++|.+|.+++++|++||.++||++.++|+++|++|+||||+||+|
T Consensus       235 il~~~-~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~P  313 (345)
T PF02536_consen  235 ILSLS-EEKLKPKIEFLQSLGFSEEEIAKMVRRFPQILSYSIEKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKP  313 (345)
T ss_dssp             --THH-HHHHHHHHHHHHTTT--HHHHHHHHHHSGGGGGS-HHHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHH
T ss_pred             ccccc-hHhHHHHHHHHHHhcCcHHHHHHHHHhCcchhhcchhhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhh
Confidence            99998 47899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H---HHHHHHCC--CCcccccccccChHHHHH
Q 008728          465 R---HKIMVENR--VNFKLRYMLACSNEEFNQ  491 (556)
Q Consensus       465 R---~~~L~~~G--l~~~l~~~L~~sd~~F~~  491 (556)
                      |   +++|+++|  ..+++.+||++||++|++
T Consensus       314 R~~~~~~l~~~g~~~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  314 RYEVLKVLKSKGLIINPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             HHHHHHTT--TTTGGGGGS-HHHHHHHHHHT-
T ss_pred             HHHHHHHHHHCcCCCCCCHHHHhhccHHHhcC
Confidence            9   56788999  678899999999999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.6e-47  Score=413.09  Aligned_cols=324  Identities=23%  Similarity=0.453  Sum_probs=306.2

Q ss_pred             ChhhHHHHHHHCCCChHHHHHHHhhccCChh-hHHHHHHHHHhCCCChhHHHHHHHhhCCccccCChh-hHHHHHHHHHh
Q 008728          110 NVVPLIRWLKHNGLSYPKIAKLICMSGGNLE-SIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIE-ELNEIVEYLET  187 (556)
Q Consensus       110 ~~~~~~~~L~~~G~s~~~i~~~~~~~~~~~~-~l~~~l~~L~~lGls~~~i~~il~r~~P~lL~~s~~-~l~~~l~~L~s  187 (556)
                      .+.+.++||+++||+.++|++.+.+...+++ .+.++++||+++|++..+|+++|.+ +|.+|.++++ ++.|+++||++
T Consensus        91 ~~~~~l~~L~s~G~~~~~i~~~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~-~P~lL~~sve~~L~P~v~fL~~  169 (487)
T PLN03196         91 VMRERVEFLHKLGLTIEDINEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRR-YPQVLHASVVVDLAPVVKYLQG  169 (487)
T ss_pred             HHHHHHHHHHHcCCChHHhccCcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHh-CCceecccHHHHHHHHHHHHHH
Confidence            4667889999999999999987777677775 7999999999999999999999997 9999999986 79999999999


Q ss_pred             CCCChhhHHHHHhhCCCcccccHH-HHHHHHHHHHHcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHHcCCChHHH
Q 008728          188 NGVRRDWMGYVMSRCPQLLSQSIE-EVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDV  266 (556)
Q Consensus       188 ~G~~~~~i~~lv~~~P~iL~~s~~-~l~~~v~fL~~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~lG~~~~~I  266 (556)
                      +|++.++|++++.++|.+|+++++ ++.++++||.++|++.+++++++.++|.||+++.++++.++++||+++|++.++|
T Consensus       170 lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I  249 (487)
T PLN03196        170 LDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAV  249 (487)
T ss_pred             cCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHH
Confidence            999999999999999999999998 5999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCcccccCcccchHHHHHHHHHcCCChhhHHHHHhhCCcccccCccccchhHHHHHH-HhCCChhhHhhhhhhc
Q 008728          267 GRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQ-DIGVRDEGIANMLVKF  345 (556)
Q Consensus       267 ~~ll~~~P~lL~~s~e~~l~~~v~~L~~lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~-~lG~s~~~i~~~i~~~  345 (556)
                      ++++.++|++|+++++++++|++++|.++|++++++.+++.++|.+++++.++.+.+++.||. ++|++.+++..++.++
T Consensus       250 ~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~  329 (487)
T PLN03196        250 ARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKL  329 (487)
T ss_pred             HHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999888999999995 8999999999999999


Q ss_pred             CccccchhhhhhHHHHHHHHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHHHH-HhCCCHHHHHHHHhhccccccc
Q 008728          346 PSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFL-SLGIKLHQLGAMIADFPMLLRY  424 (556)
Q Consensus       346 P~iL~~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~L~-~lG~~~~ei~~ml~~~P~lL~~  424 (556)
                      |++++++.+ +++++++||. ++||+.+++..|+.++|++|++|. ++|++|++||. ++|++.++    |+++|++|+|
T Consensus       330 P~il~lSe~-kl~~kvefL~-~~Gls~edI~~mv~k~P~lL~~S~-~~l~~k~dFlvneMg~~~~~----Iv~fP~~Lsy  402 (487)
T PLN03196        330 PQIVSLNRN-VALKHVEFLR-GRGFSAQDVAKMVVRCPQILALNL-EIMKPSLEFFKKEMKRPLKE----LVEFPAYFTY  402 (487)
T ss_pred             chhhcccHH-HHHHHHHHHH-HcCCCHHHHHHHHHhCCceeeccH-HHHHHHHHHHHHHhCCCHHH----HHhChHHhcc
Confidence            999999976 5999999995 799999999999999999999997 89999999999 59999875    5799999999


Q ss_pred             chh-hHHHHHHHHHHHhCC
Q 008728          425 NID-IFRPKYRYLRRTMVR  442 (556)
Q Consensus       425 s~e-~l~~k~~fL~~~mg~  442 (556)
                      |.| +|+||+++|.++ |+
T Consensus       403 SLEkRI~PR~~~L~~k-Gl  420 (487)
T PLN03196        403 GLESRIKPRYERVAKK-GI  420 (487)
T ss_pred             ChhhhhHHHHHHHHHc-CC
Confidence            999 999999998865 54

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=9.1e-39  Score=334.48  Aligned_cols=309  Identities=28%  Similarity=0.516  Sum_probs=238.8

Q ss_pred             HHHHHCCCChHHHHHHHhh----ccCChh-hHHHHHHHHHhCCCChhHHHHHHHhhCCccccCC-hhhHHHHHHHHHhCC
Q 008728          116 RWLKHNGLSYPKIAKLICM----SGGNLE-SIRHLAEWLKSVHVKGEFLGVALLKTGGNILERS-IEELNEIVEYLETNG  189 (556)
Q Consensus       116 ~~L~~~G~s~~~i~~~~~~----~~~~~~-~l~~~l~~L~~lGls~~~i~~il~r~~P~lL~~s-~~~l~~~l~~L~s~G  189 (556)
                      ++|+++||+..+|.++++.    ...+++ ++.++++||.++|++..++++++.+ +|.++..+ .+++.+.+++|+++|
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~-~P~il~~s~~~~i~p~~~~L~~~~   80 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSK-NPQILSRSLEKNIIPVFDFLKSIG   80 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH--GGGGGS--HHHHHHHHHHHTTTS
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHh-ChHHHhccchhhHHHHHHHHHHHc
Confidence            5789999999999999873    245664 8999999999999999999999997 99999999 678999999999999


Q ss_pred             CChhhHHHHHhhCCCcccccHH-HHHHHHHHHHHcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHHcCCChHHHHH
Q 008728          190 VRRDWMGYVMSRCPQLLSQSIE-EVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGR  268 (556)
Q Consensus       190 ~~~~~i~~lv~~~P~iL~~s~~-~l~~~v~fL~~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~lG~~~~~I~~  268 (556)
                      ++.+++++++.++|.+|..+.+ ++.+++.||+++|++.+.+.+++...|.++...  +.+.+.+++|.++|++++++.+
T Consensus        81 ~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~  158 (345)
T PF02536_consen   81 LSDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGR  158 (345)
T ss_dssp             S-HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCC
T ss_pred             CCHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhcc
Confidence            9999999999999999988775 799999999999999998999999999877653  8999999999999999999999


Q ss_pred             HHhhCCcccccCcccchHHHHHHHHHcCCChhhHHHHHhhCCcccccCccccchhHHHHHHHhCCChhhHhhhhhhcCcc
Q 008728          269 LLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSL  348 (556)
Q Consensus       269 ll~~~P~lL~~s~e~~l~~~v~~L~~lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~~lG~s~~~i~~~i~~~P~i  348 (556)
                      ++..+|.++..+.+++++++++||+++|++.+++.+++.++|.++..+.++.+.++..++...|...+   .++.++|.+
T Consensus       159 vi~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~---~~i~~~p~i  235 (345)
T PF02536_consen  159 VIAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEE---RVIKKFPQI  235 (345)
T ss_dssp             CHHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC-----------------------------
T ss_pred             cccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceeccccccccccccccccccccccc---ccccccccc
Confidence            99999988888888899999999999999999999999999999999988767766556666666655   889999999


Q ss_pred             ccchhhhhhHHHHHHHHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHHHHH-hCCCHHHHHHHHhhcccccccchh
Q 008728          349 LTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLS-LGIKLHQLGAMIADFPMLLRYNID  427 (556)
Q Consensus       349 L~~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~L~~-lG~~~~ei~~ml~~~P~lL~~s~e  427 (556)
                      ++++.+ ++.++++|| .++|++.+++.+|+.++|++|+++.+ ++++|++||.+ +|++.++|    .++|++|+||.|
T Consensus       236 l~~~~~-~l~~~i~~L-~~lG~s~~ei~~mv~~~P~iL~~s~e-~l~~k~~fl~~~m~~~~~~i----~~~P~~l~~sLe  308 (345)
T PF02536_consen  236 LSLSEE-KLKPKIEFL-QSLGFSEEEIAKMVRRFPQILSYSIE-KLKPKFEFLVKEMGLPLEEI----VEFPQYLSYSLE  308 (345)
T ss_dssp             -THHHH-HHHHHHHHH-HTTT--HHHHHHHHHHSGGGGGS-HH-HHHHHHHHHHHCCT--HHHH----HHSCHHHCS-HH
T ss_pred             cccchH-hHHHHHHHH-HHhcCcHHHHHHHHHhCcchhhcchh-hhhHHHHHHHHHhCcCHHHH----hhCCceeEechh
Confidence            999966 599999999 57999999999999999999999974 59999999995 99998865    589999999998


Q ss_pred             -hHHHHHHHHH
Q 008728          428 -IFRPKYRYLR  437 (556)
Q Consensus       428 -~l~~k~~fL~  437 (556)
                       +++||++++.
T Consensus       309 ~ri~PR~~~~~  319 (345)
T PF02536_consen  309 KRIKPRYEVLK  319 (345)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hhhhhHHHHHH
Confidence             7999955554

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.97  E-value=3.2e-30  Score=275.81  Aligned_cols=338  Identities=26%  Similarity=0.433  Sum_probs=292.8

Q ss_pred             HCCCChHHHHHHHhhc-cCChhhHHHHHHHHHhCCCChhHHHHHHHhhCCccccCChhh-HHHHHHHHHhCCCChhhHHH
Q 008728          120 HNGLSYPKIAKLICMS-GGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEE-LNEIVEYLETNGVRRDWMGY  197 (556)
Q Consensus       120 ~~G~s~~~i~~~~~~~-~~~~~~l~~~l~~L~~lGls~~~i~~il~r~~P~lL~~s~~~-l~~~l~~L~s~G~~~~~i~~  197 (556)
                      +.|.+...+..+.+.. ........+.+++|+++|++..++..++.. +|.++..+.++ +.+...+|.+.|++..++..
T Consensus        68 s~~~~~~~~~~~~~~~~~~~~~~p~s~~~~l~s~g~~~~~i~s~i~~-~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~  146 (413)
T KOG1267|consen   68 SLGLSIKLARKLSREVSSEDSVNPSSVLSSLRSLGFTDSQISSIILS-SPKLLYLSSENILKPKLRLLDSLGLPSSELSS  146 (413)
T ss_pred             ccccchhhHHHHHHHHHhhhccCcHHHHHHHHhcCCchhhccccccc-CchhhhccchhhhhhhhhhhhccCccccccch
Confidence            4566666666666532 344556778899999999999999999996 99999998765 66777899999999999999


Q ss_pred             HHhhCCCcccccHH-HHHHHHHHHHHcC--CChhHHHHHHHhCCcccccchhhhHHHHHHHHHHcCCChHHHHHHHhhCC
Q 008728          198 VMSRCPQLLSQSIE-EVKTRVHFYLDMG--MNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRP  274 (556)
Q Consensus       198 lv~~~P~iL~~s~~-~l~~~v~fL~~lG--~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~lG~~~~~I~~ll~~~P  274 (556)
                      +++..|.+|..+.. ++.+.++|+++++  .....+.+++...|....  .+..+. ++++++++|+....+..++..+|
T Consensus       147 i~s~~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~--~~~~v~-~~~~~~~lg~~~~~L~~~l~~~~  223 (413)
T KOG1267|consen  147 IVSVVPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSFLL--NENSVE-RLDIRRELGVKPRLLKSLLESQP  223 (413)
T ss_pred             hhhccHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhccccccccc--cccccc-cchhhHHhCCCHHHHHHHHhcCc
Confidence            99998999887665 7999999999984  777888888877774432  223444 99999999999999999999999


Q ss_pred             cccccCcccchHHHHHHHHHcCCChhhHHHHHhhCCcccccCccccchhHHHHHHHhCCChhhHhhhhhhcCccccchhh
Q 008728          275 HLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLY  354 (556)
Q Consensus       275 ~lL~~s~e~~l~~~v~~L~~lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~~lG~s~~~i~~~i~~~P~iL~~s~~  354 (556)
                      .+.....  .+...+.++..+|+.+..  +++...|.++.++.++++++++++|+++|++.++++.|+.++|++|+++.+
T Consensus       224 ~~~~~~~--~l~~~~~~i~~~g~~p~~--~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~  299 (413)
T KOG1267|consen  224 RPVLLYL--KLKARLPFLLTLGFDPKT--REFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVK  299 (413)
T ss_pred             cceeeeh--hhhhhhhhHHHhccCCch--hHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehh
Confidence            9998764  588889999999988877  888999999999999999999999999999999999999999999999998


Q ss_pred             hhhHHHHHHHHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHHHHHhCCCHHHHHHHHhhcccccccchh-hHHHHH
Q 008728          355 KKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNID-IFRPKY  433 (556)
Q Consensus       355 ~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~L~~lG~~~~ei~~ml~~~P~lL~~s~e-~l~~k~  433 (556)
                      +++ ..+.|+++.    .++    +.++|+++.++ +.++.++++||...|++..++..|++++|+++.++.+ .++.+.
T Consensus       300 ~~~-~~~~~~~~~----~~~----~~k~p~~l~~s-~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~  369 (413)
T KOG1267|consen  300 KNL-KTTEYLLKN----PKH----ILKFPQLLRSS-EDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKY  369 (413)
T ss_pred             hhh-HHHHHHHhc----chh----hhhhhhhhhcc-chhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhH
Confidence            755 556666555    233    77999999666 5899999999999999999999999999999999999 999999


Q ss_pred             HHHHHHhCCChhHHhhcCcccccCcccccHHHHHHHHHCCCC
Q 008728          434 RYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVN  475 (556)
Q Consensus       434 ~fL~~~mg~~~~~i~~~P~~L~ySLe~RI~pR~~~L~~~Gl~  475 (556)
                      +|+.+.|+++.+.++.+|.+++|++|.|+.||+.....+|..
T Consensus       370 ~~~~~~~~~p~~~~~~~p~~~~y~le~ri~pr~~~~~~~~~~  411 (413)
T KOG1267|consen  370 EYLLKGLLRPLSALVSFPAFFGYSLEKRIRPRFNVIKKLGVK  411 (413)
T ss_pred             HHHHHHcCchHHHHhccchhhccchhhcchhHHHHHHHHhcc
Confidence            999999999999999999999999999999999988776643

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.87  E-value=2e-21  Score=208.15  Aligned_cols=313  Identities=20%  Similarity=0.347  Sum_probs=263.8

Q ss_pred             cCCChhhHHHHHHHCCCChHHHHHHHhhc----cCCh-hhHHHHHHHHHhCCCChhHHHHHHHhhCCccccCCh-hhHHH
Q 008728          107 EDSNVVPLIRWLKHNGLSYPKIAKLICMS----GGNL-ESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSI-EELNE  180 (556)
Q Consensus       107 ~~~~~~~~~~~L~~~G~s~~~i~~~~~~~----~~~~-~~l~~~l~~L~~lGls~~~i~~il~r~~P~lL~~s~-~~l~~  180 (556)
                      ...+..+....|+++|++..+|.++...+    ..+. ..+.+++.+|.+.|++.+.+..++.. .|.+|..+. .++..
T Consensus        87 ~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~-~~~il~~~~~~~~~~  165 (413)
T KOG1267|consen   87 DSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSV-VPKILLKSKGESLST  165 (413)
T ss_pred             hccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhc-cHHHHHhhcCCchhh
Confidence            35566778899999999999999998632    3344 46788888999999999999999996 888888654 58999


Q ss_pred             HHHHHHhCC--CChhhHHHHHhhCCCcccccHHHHHHHHHHHHHcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHH
Q 008728          181 IVEYLETNG--VRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKE  258 (556)
Q Consensus       181 ~l~~L~s~G--~~~~~i~~lv~~~P~iL~~s~~~l~~~v~fL~~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~  258 (556)
                      .++||++++  +....+..++...|... ..+..+. ++++++++|+...++..++..+|.+.....  .+...+.++..
T Consensus       166 ~~~~l~~~~~~~~~s~~~~~~~~~~~~~-~~~~~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~--~l~~~~~~i~~  241 (413)
T KOG1267|consen  166 FIEFLKSIPPELLSSVVERLLTPVPSFL-LNENSVE-RLDIRRELGVKPRLLKSLLESQPRPVLLYL--KLKARLPFLLT  241 (413)
T ss_pred             HHHHhhccchhhhhhHHHHhcccccccc-ccccccc-cchhhHHhCCCHHHHHHHHhcCccceeeeh--hhhhhhhhHHH
Confidence            999999985  77777777766665311 1122344 899999999999999999999999987643  78888999999


Q ss_pred             cCCChHHHHHHHhhCCcccccCcccchHHHHHHHHHcCCChhhHHHHHhhCCcccccCccccchhHHHHHHHhCCChhhH
Q 008728          259 FGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGI  338 (556)
Q Consensus       259 lG~~~~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~~lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~~lG~s~~~i  338 (556)
                      +|+.+..  +++...|.++.++.++++++++++|+++|++.++++.++.++|.+|+++.+. +..+++++...  . ++ 
T Consensus       242 ~g~~p~~--~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~-~~~~~~~~~~~--~-~~-  314 (413)
T KOG1267|consen  242 LGFDPKT--REFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVKK-NLKTTEYLLKN--P-KH-  314 (413)
T ss_pred             hccCCch--hHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehhh-hhHHHHHHHhc--c-hh-
Confidence            9987766  8888999999999999999999999999999999999999999999999764 77778887765  3 33 


Q ss_pred             hhhhhhcCccccchhhhhhHHHHHHHHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHHHH-HhCCCHHHHHHHHhh
Q 008728          339 ANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFL-SLGIKLHQLGAMIAD  417 (556)
Q Consensus       339 ~~~i~~~P~iL~~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~L~-~lG~~~~ei~~ml~~  417 (556)
                         +.++|+++.++.. ++.++++|+ ..+|++..++..+++++|++++++.+..++.+.+++. .++++.+    ++..
T Consensus       315 ---~~k~p~~l~~s~~-~l~~~ie~l-~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~~----~~~~  385 (413)
T KOG1267|consen  315 ---ILKFPQLLRSSED-KLKPRIEFL-LSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLLRPLS----ALVS  385 (413)
T ss_pred             ---hhhhhhhhhccch-hhhhhHHHH-HHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcCchHH----HHhc
Confidence               8999999966655 699999999 5999999999999999999999998667888899998 5998855    6679


Q ss_pred             cccccccchh-hHHHHHHHHHHHh
Q 008728          418 FPMLLRYNID-IFRPKYRYLRRTM  440 (556)
Q Consensus       418 ~P~lL~~s~e-~l~~k~~fL~~~m  440 (556)
                      +|.++.|+.+ ++.+|+......+
T Consensus       386 ~p~~~~y~le~ri~pr~~~~~~~~  409 (413)
T KOG1267|consen  386 FPAFFGYSLEKRIRPRFNVIKKLG  409 (413)
T ss_pred             cchhhccchhhcchhHHHHHHHHh
Confidence            9999999999 9999999887654

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.54  E-value=0.0017  Score=42.17  Aligned_cols=28  Identities=25%  Similarity=0.619  Sum_probs=17.0

Q ss_pred             HHhhcccccccchhhHHHHHHHHHHHhCC
Q 008728          414 MIADFPMLLRYNIDIFRPKYRYLRRTMVR  442 (556)
Q Consensus       414 ml~~~P~lL~~s~e~l~~k~~fL~~~mg~  442 (556)
                      ++.++|.+++++.++++++++||. .+|+
T Consensus         3 ~~~~~P~il~~~~~~l~~~~~~l~-~~g~   30 (31)
T smart00733        3 ILKKFPQILGYSEKKLKPKVEFLK-ELGF   30 (31)
T ss_pred             hhhhCcCcccccHHHhhHHHHHHH-HcCC
Confidence            455666666666556666666666 5554

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.39  E-value=0.0026  Score=41.18  Aligned_cols=28  Identities=36%  Similarity=0.577  Sum_probs=15.0

Q ss_pred             HHhhccceeeccchhhHHHHHHHHHHhCC
Q 008728          378 CLALGPELLGCSIGNKLEVNVKYFLSLGI  406 (556)
Q Consensus       378 vi~~~P~iL~~s~~~~l~~kv~~L~~lG~  406 (556)
                      ++.++|.+++++ +++++++++||+++|+
T Consensus         3 ~~~~~P~il~~~-~~~l~~~~~~l~~~g~   30 (31)
T smart00733        3 ILKKFPQILGYS-EKKLKPKVEFLKELGF   30 (31)
T ss_pred             hhhhCcCccccc-HHHhhHHHHHHHHcCC
Confidence            344555555555 4555555555555554

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=91.67  E-value=0.68  Score=48.33  Aligned_cols=41  Identities=20%  Similarity=0.154  Sum_probs=24.7

Q ss_pred             cccccCcccch-HHHHHHHH-HcCCChhhHHHHHhhCCccccc
Q 008728          275 HLMGCGIGERW-KPLVKYLY-YLGVSRDGMRRMLVIKPMVFCF  315 (556)
Q Consensus       275 ~lL~~s~e~~l-~~~v~~L~-~lGls~~~i~~il~~~P~iL~~  315 (556)
                      .+|.++.++.| -.++..++ ++|++.+=...++.+||..+..
T Consensus       108 KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frv  150 (335)
T PF11955_consen  108 KLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRV  150 (335)
T ss_pred             HHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEE
Confidence            44555554333 23455565 6777777667777777776654

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=89.62  E-value=2.1  Score=40.33  Aligned_cols=20  Identities=20%  Similarity=-0.084  Sum_probs=12.1

Q ss_pred             HHHHHHhCCCChhHHHHHHH
Q 008728          145 LAEWLKSVHVKGEFLGVALL  164 (556)
Q Consensus       145 ~l~~L~~lGls~~~i~~il~  164 (556)
                      .+..|+++|++-.+|..++.
T Consensus        50 ~I~~lr~~G~sL~eI~~ll~   69 (172)
T cd04790          50 QICAYRSAGVSLEDIRSLLQ   69 (172)
T ss_pred             HHHHHHHcCCCHHHHHHHHh
Confidence            44455666666666666554

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=87.69  E-value=5.3  Score=37.61  Aligned_cols=47  Identities=23%  Similarity=0.323  Sum_probs=25.3

Q ss_pred             hHHHHHHHHHcCCChhhHHHHHhhCCcccccCccc-cchhHHHHHHHhCCChhhHh
Q 008728          285 WKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLET-TIVPKVRFFQDIGVRDEGIA  339 (556)
Q Consensus       285 l~~~v~~L~~lGls~~~i~~il~~~P~iL~~~~e~-~l~~kv~~L~~lG~s~~~i~  339 (556)
                      ....++.++.+|++++++.+.=..+        ++ +=..-.+||..+|++.+++.
T Consensus       118 ~~~w~~l~~~~g~~~~~m~~wh~~f--------e~~~p~~h~~~l~~~g~~~~~~~  165 (172)
T cd04790         118 KEKWVAILKAAGMDEADMRRWHIEF--------EKMEPEAHQEFLQSLGIPEDEIE  165 (172)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHH--------HHhCcHHHHHHHHHcCCCHHHHH
Confidence            3445566667777776654432211        11 11233567777777777653

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

>PRK14135 recX recombination regulator RecX; Provisional

Probab=87.45  E-value=33  Score=34.35  Aligned_cols=137  Identities=12%  Similarity=0.108  Sum_probs=67.0

Q ss_pred             HHHHHHCCCChHHHHHHHhhccCChhhHHHHHHHHHhCCC-ChhHHHHHHHhhCCccccCChhhHHHHHHHHHhCCCChh
Q 008728          115 IRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHV-KGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRD  193 (556)
Q Consensus       115 ~~~L~~~G~s~~~i~~~~~~~~~~~~~l~~~l~~L~~lGl-s~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s~G~~~~  193 (556)
                      +.+|....-|..++..-...-+++.+.+..+++.|...|+ +....+....+.+   +.........+...|...|++.+
T Consensus        64 l~~L~~r~~s~~el~~kL~~kg~~~~~Ie~vl~~l~~~~~ldD~~~a~~~~~~~---~~~~~~g~~~I~~kL~~kGi~~~  140 (263)
T PRK14135         64 LYYLSYQMRTEKEVRDYLKKHEISEEIISEVIDKLKEEKYIDDKEYAESYVRTN---INTGDKGPRVIKQKLLQKGIEDE  140 (263)
T ss_pred             HHHhhhccccHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---HhccccchHHHHHHHHHcCCCHH
Confidence            4444444555555544444334556666777777777775 3333333322201   11111223345667778888888


Q ss_pred             hHHHHHhhCCCcccccHHHHHHHHHHHHHcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHHcCCChHHHHHHHhh
Q 008728          194 WMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAF  272 (556)
Q Consensus       194 ~i~~lv~~~P~iL~~s~~~l~~~v~fL~~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~lG~~~~~I~~ll~~  272 (556)
                      .|..++....   ..++  +.....+          +.+.+.++..   .+....-.....+|..-|++.+.|..++..
T Consensus       141 ~Ie~~l~~l~---~~~~--~d~a~~~----------~~k~~~~~~~---~~~~~~k~Ki~~~L~rkGf~~~~I~~~l~~  201 (263)
T PRK14135        141 IIEEALSEYT---EEDQ--IEVAQKL----------AEKLLKKYQK---LPFKALKQKIIQSLLTKGFSYEVIKAALEE  201 (263)
T ss_pred             HHHHHHHhCC---hhhH--HHHHHHH----------HHHHHHHhcC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            8887776532   1111  1110001          1111122210   111112234567788888888888777764

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=87.37  E-value=1  Score=47.05  Aligned_cols=101  Identities=22%  Similarity=0.245  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHhhCCccccCCh--------hhHHHHHHHH--HhCCCChhhHHHHHhhCCCcccccHH
Q 008728          142 IRHLAEWLKSVHVKGEFLGVALLKTGGNILERSI--------EELNEIVEYL--ETNGVRRDWMGYVMSRCPQLLSQSIE  211 (556)
Q Consensus       142 l~~~l~~L~~lGls~~~i~~il~r~~P~lL~~s~--------~~l~~~l~~L--~s~G~~~~~i~~lv~~~P~iL~~s~~  211 (556)
                      +...-.+-..+|+....+...+.| ||.++....        -.+-+...-|  +...+-.+.-..++.+--.+|-+|.+
T Consensus        37 l~~l~k~~~~L~l~~~~~~~flrk-yP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~  115 (335)
T PF11955_consen   37 LRDLSKLRRQLGLKPRKVSRFLRK-YPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKD  115 (335)
T ss_pred             HHHHHHHHHhcCCCcccHHHHHHh-CCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCC
Confidence            333334446789977888889997 999996421        0111111111  01111101112222333346666665


Q ss_pred             H--HHHHHHHHH-HcCCChhHHHHHHHhCCccccc
Q 008728          212 E--VKTRVHFYL-DMGMNKNDFGTMVFDYPKILGF  243 (556)
Q Consensus       212 ~--l~~~v~fL~-~lG~s~~~l~~ll~~~P~iL~~  243 (556)
                      .  -..+|..++ ++|++++-...++.+||..+.-
T Consensus       116 ~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frv  150 (335)
T PF11955_consen  116 RRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRV  150 (335)
T ss_pred             CcccHHHHHHHHHHcCCChhhccchhhhCCCCcEE
Confidence            3  245677776 8999999999999999998754

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>PRK14136 recX recombination regulator RecX; Provisional

Probab=82.55  E-value=37  Score=34.91  Aligned_cols=138  Identities=14%  Similarity=0.164  Sum_probs=86.3

Q ss_pred             HHHHHHHCCCChHHHHHHHhhccCChhhHHHHHHHHHhCCC-ChhHHHHHHHhhCCccccCChhhHHHHHHHHHhCCCCh
Q 008728          114 LIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHV-KGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRR  192 (556)
Q Consensus       114 ~~~~L~~~G~s~~~i~~~~~~~~~~~~~l~~~l~~L~~lGl-s~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s~G~~~  192 (556)
                      .+.||..---+..++..-.....+..+.+..+|+.|++.|+ +.........+ . ..  .. .-...+..-|+..||+.
T Consensus       168 AL~lLSrReRSe~ELr~KL~kkG~~ee~IE~VIerLke~gYLDDeRFAesyVr-~-R~--~k-kGp~rIrqELrQKGId~  242 (309)
T PRK14136        168 ALGYLSRREYSRAELARKLAPYADESDSVEPLLDALEREGWLSDARFAESLVH-R-RA--SR-VGSARIVSELKRHAVGD  242 (309)
T ss_pred             HHHHhhcccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHH-H-Hh--hc-hhHHHHHHHHHHcCCCH
Confidence            56777777788888877766556788899999999999987 45555555444 2 11  11 12334567799999999


Q ss_pred             hhHHHHHhhCCCcccccHHHHHHHHHHHHHcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHHcCCChHHHHHHHhh
Q 008728          193 DWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAF  272 (556)
Q Consensus       193 ~~i~~lv~~~P~iL~~s~~~l~~~v~fL~~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~lG~~~~~I~~ll~~  272 (556)
                      +.|...+....      .+.+......+++             ++..+ .. ........+.||..-||+.+.|..+|..
T Consensus       243 eLIEqALeeie------EDE~E~A~~L~eK-------------K~~~~-~~-d~kek~K~iRfL~rRGFS~D~I~~vLk~  301 (309)
T PRK14136        243 ALVESVGAQLR------ETEFERAQAVWRK-------------KFGAL-PQ-TPAERAKQARFLAARGFSSATIVKLLKV  301 (309)
T ss_pred             HHHHHHHHhcc------HhHHHHHHHHHHH-------------Hhccc-Cc-CHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence            99988876431      1222222222221             11111 01 1233456689999999999999998876


Q ss_pred             CCccc
Q 008728          273 RPHLM  277 (556)
Q Consensus       273 ~P~lL  277 (556)
                      +-.-+
T Consensus       302 ~~de~  306 (309)
T PRK14136        302 GDDEF  306 (309)
T ss_pred             chhcc
Confidence            54433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	556
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-58
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	6e-31
3mva_O	343	Transcription termination factor, mitochondrial; a	2e-56
3mva_O	343	Transcription termination factor, mitochondrial; a	1e-18
3mva_O	343	Transcription termination factor, mitochondrial; a	7e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  194 bits (495), Expect = 2e-58
 Identities = 48/252 (19%), Positives = 100/252 (39%), Gaps = 12/252 (4%)

Query: 252 KVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPM 311
            +  L   G+    + +       L+     +  K ++ +L  +G+  + +   L     
Sbjct: 8   TLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHA 67

Query: 312 VFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVS 371
           +F  DLE  +  +V +          +A M+ K P LL +S+ +++   + F   +  +S
Sbjct: 68  IFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSV-ERLDNRLGFFQKELELS 125

Query: 372 ERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRP 431
            +     +   P LL  S+    E    Y L LG K +++  MI   P +L  N      
Sbjct: 126 VKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTE 185

Query: 432 KYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVE---------NRVNFKLRYML 482
            + ++   M  P   +++FP+ F+  L  ++  RH  +                 L  ++
Sbjct: 186 TFDFVHNVMSIPHHIIVKFPQVFNTRL-FKVKERHLFLTYLGRAQYDPAKPNYISLDKLV 244

Query: 483 ACSNEEFNQKVA 494
           +  +E F +++A
Sbjct: 245 SIPDEIFCEEIA 256

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  120 bits (302), Expect = 6e-31
 Identities = 40/197 (20%), Positives = 90/197 (45%), Gaps = 8/197 (4%)

Query: 170 ILERSIEE-LNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKN 228
           +L    E+ + +++ +L+  G+  + +G  +++   + S+ +E +KTRV +      +K 
Sbjct: 32  LLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKA 91

Query: 229 DFGTMVFDYPKILGFLTLEEMHQKVTYL-KEFGLSTEDVGRLLAFRPHLMGCGIGERWKP 287
           D   MV   P +L F ++E +  ++ +  KE  LS +    L+   P L+   +    + 
Sbjct: 92  DVAQMVRKAPFLLNF-SVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKEN 150

Query: 288 LVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPS 347
           +  Y   LG   + ++ M+   P +   + +  +     F  ++        +++VKFP 
Sbjct: 151 MKVYRLELGFKHNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIP---HHIIVKFPQ 206

Query: 348 LLTYSLYKKIRPVVIFL 364
           +    L  K++   +FL
Sbjct: 207 VFNTRL-FKVKERHLFL 222

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  191 bits (487), Expect = 2e-56
 Identities = 65/348 (18%), Positives = 132/348 (37%), Gaps = 21/348 (6%)

Query: 160 GVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHF 219
           G  L     +  +    +  ++++ L T GV  D       R P +  + I   +    F
Sbjct: 1   GHMLFGVKCHNTDSEPLKNEDLLKNLLTMGVDID---MARKRQPGVFHRMITNEQDLKMF 57

Query: 220 YLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPH-LMG 278
            L  G +K    +++  YP+ +   T E + ++    ++   S  ++  +L   P     
Sbjct: 58  LLSKGASKEVIASIISRYPRAIT-RTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFR 116

Query: 279 CGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVR---- 334
                  +  +K+LY +G++R  + R+L   P  F   L+      V F Q  G+     
Sbjct: 117 SNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLGHN 175

Query: 335 --DEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLA-LGPELLGCSIG 391
              + +  ++ K P +L  S  K+++  + FL +   ++  ++   +   G E+L  S  
Sbjct: 176 DPADFVRKIIFKNPFILIQST-KRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSND 234

Query: 392 N---KLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLI 448
                     +   SLG    ++   +  +P ++      F  K   L       +  +I
Sbjct: 235 YARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQII 293

Query: 449 EFPRFFSYSLEERIIPRHKIMVENRVNFKLRY--MLACSNEEFNQKVA 494
           E PR    S+   +  R K +V    N       +L+ S + +  K+ 
Sbjct: 294 ENPRVLDSSI-STLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLK 340

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 86.6 bits (214), Expect = 1e-18
 Identities = 47/245 (19%), Positives = 93/245 (37%), Gaps = 29/245 (11%)

Query: 286 KPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKF 345
           + L+K L  +GV  D  R+    +P VF   +         F    G   E IA+++ ++
Sbjct: 20  EDLLKNLLTMGVDIDMARK---RQPGVFHRMITN-EQDLKMFLLSKGASKEVIASIISRY 75

Query: 346 PSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNK-LEVNVKYFLSL 404
           P  +T +  + +         K   S+ +I   L   PE    S  N  LE N+K+  S+
Sbjct: 76  PRAITRTP-ENLSKRWDLW-RKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSV 133

Query: 405 GIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQD---------LIEFPRFFS 455
           G+    L  ++ + P     ++D+ +    +L+   +    +         + + P    
Sbjct: 134 GLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILI 193

Query: 456 YSLEERIIPRHKIM----------VENRVNFKLRYMLACSNEEFNQKVADKVEGRRLYEL 505
            S  +R+    + +          +   +      +L  SN+   +  A+  E  +L+ L
Sbjct: 194 QS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKE--KLFSL 250

Query: 506 GLINE 510
           G   E
Sbjct: 251 GCTEE 255

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 75.1 bits (184), Expect = 7e-15
 Identities = 33/239 (13%), Positives = 85/239 (35%), Gaps = 49/239 (20%)

Query: 107 EDSNVVPLIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKT 166
            + N+   I++L   GL+   + +L+  +                               
Sbjct: 119 NNLNLENNIKFLYSVGLTRKCLCRLLTNA------------------------------- 147

Query: 167 GGNILERSIEELNEIVEYLETNGVR------RDWMGYVMSRCPQLLSQSIEEVKTRVHFY 220
                  S++   ++VE+L+  G+        D++  ++ + P +L QS + VK  + F 
Sbjct: 148 -PRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFL 206

Query: 221 LD-MGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEF----GLSTEDVGRLLAFRPH 275
                +N  +   ++      +  L+ +   +    +KE     G + E+V + +   P 
Sbjct: 207 RSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPD 266

Query: 276 LMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVR 334
           ++     +++   +  L    +S       ++  P V    +  T+  +++   + G  
Sbjct: 267 VIFLAE-KKFNDKIDCLMEENISIS----QIIENPRVLDSSIS-TLKSRIKELVNAGCN 319

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 2e-10
 Identities = 87/633 (13%), Positives = 177/633 (27%), Gaps = 188/633 (29%)

Query: 10  PHLRTLFKQQPPSSNDNDGGDVDEELIMKALDIRRQVTAEIFKEAMWRKGK-------FG 62
                 F        + D  DV +         +  ++ E     +  K         F 
Sbjct: 23  SVFEDAFVD------NFDCKDVQDMP-------KSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 63  I--TYSTNVADRLPDFIDHVMIK-----AAALKKLPEFADSSFNVRAKWFIED----SNV 111
              +    +  +   F++ V+        + +K   E    S   R   +IE      N 
Sbjct: 70  TLLSKQEEMVQK---FVEEVLRINYKFLMSPIKT--EQRQPSMMTRM--YIEQRDRLYND 122

Query: 112 VPLIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWL---------KSV---------H 153
             +    K+N        KL       L  +R  A+ +         K+           
Sbjct: 123 NQVFA--KYNVSRLQPYLKLR----QALLELRP-AKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 154 VKGEF-LGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEE 212
           V+ +    +  L         +      ++E L+    + D      S     +   I  
Sbjct: 176 VQCKMDFKIFWLNLK------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 213 VKTRVHFYLDMGMNKN---------DFGTM-VFDYP-KILGFLT---------LEEMHQK 252
           ++  +   L     +N         +      F+   KIL  LT         L      
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTT 287

Query: 253 VTYLKEF--GLSTEDVGRLLAFR--------PHLMGCG--------IGE-------RWKP 287
              L      L+ ++V  LL           P  +           I E        W  
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRLSIIAESIRDGLATWD- 345

Query: 288 LVKYLYYLGVSRDGMRRML-----VIKP--------MVFCFDLETTIVPKV--RFFQDIG 332
                 +  V+ D +  ++     V++P         +  F     I   +    + D+ 
Sbjct: 346 -----NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 333 VRD-EGIANMLVKFPSLL-------TYSLY-----KKIRPVVIFLMTKAGVSERDIGKCL 379
             D   + N L K+ SL+       T S+       K++    + + ++ V   +I K  
Sbjct: 401 KSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 380 ALGPELLGCSIGNKLEVNVKYFLS-LG--IKLHQLGAMIADFPMLLRYNIDIFRPKYRY- 435
                    S         +YF S +G  +K  +    +  F M+   +      K R+ 
Sbjct: 460 --------DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-LDFRFLEQKIRHD 510

Query: 436 -----LRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVNFKLRYMLACSNEEFN 490
                   +++  LQ L  +  +          P+++ +V   ++F  +        ++ 
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYIC-----DNDPKYERLVNAILDFLPKIEENLICSKY- 564

Query: 491 QKVADKVEGRRLYELGLINEAPHSQTVDDSLRQ 523
                      L  + L+         +++ +Q
Sbjct: 565 ---------TDLLRIALMA--EDEAIFEEAHKQ 586

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	556
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.93
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.47
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.48
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	96.35
4hpz_A	463	Dtale2; DNA binding protein, N-terminal domain; 2.	96.06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	95.65
4hpz_A	463	Dtale2; DNA binding protein, N-terminal domain; 2.	92.42
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	92.24
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	91.43
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	90.8
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	87.56
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	87.48
2w84_A	70	Peroxisomal membrane protein PEX14; zellweger synd	81.98
3e3v_A	177	Regulatory protein RECX; PSI-II, NYSGXRC, structur	80.31

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=2.6e-49  Score=412.10  Aligned_cols=311  Identities=17%  Similarity=0.281  Sum_probs=239.2

Q ss_pred             hhHHHHHHHHHhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHHHhCCCChhhHHHHHhhCCCcccccHHHHHHHHHH
Q 008728          140 ESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHF  219 (556)
Q Consensus       140 ~~l~~~l~~L~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s~G~~~~~i~~lv~~~P~iL~~s~~~l~~~v~f  219 (556)
                      ...+.++++|.++|++.+++   +. .+|+++..++++..++++||+++|++.++|++++.++|.+|.++++++.++++|
T Consensus        17 ~~~~~~v~~L~s~Gl~~~~~---~~-~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~f   92 (343)
T 3mva_O           17 LKNEDLLKNLLTMGVDIDMA---RK-RQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDL   92 (343)
T ss_dssp             ---CCHHHHHHHHTCCHHHH---HH-HCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHcCCCHHHH---HH-hCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHH
Confidence            34566888888888886654   34 388888888888888888888888888888888888888888887778888888


Q ss_pred             HHHcCCChhHHHHHHHhCCcccccchh-hhHHHHHHHHHHcCCChHHHHHHHhhCCcccccCcccchHHHHHHHHHcCCC
Q 008728          220 YLDMGMNKNDFGTMVFDYPKILGFLTL-EEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVS  298 (556)
Q Consensus       220 L~~lG~s~~~l~~ll~~~P~iL~~~~~-~~l~~~v~~L~~lG~~~~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~~lGls  298 (556)
                      |+++|++++++++++.++|++|..+.. +++.++++||+++|++.++|++++.++|+++++++++ .++++++|+++|++
T Consensus        93 L~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~~lgv~  171 (343)
T 3mva_O           93 WRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLS  171 (343)
T ss_dssp             HTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHHHhCCC
Confidence            888888888888888888884433344 3677777777777777777777777777777777764 37777777765543


Q ss_pred             ------hhhHHHHHhhCCcccccCccccchhHHHHHH-HhCCChhhHhhhhhhcCccccchhhhhhHHHHHHHHHHcCCC
Q 008728          299 ------RDGMRRMLVIKPMVFCFDLETTIVPKVRFFQ-DIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVS  371 (556)
Q Consensus       299 ------~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~-~lG~s~~~i~~~i~~~P~iL~~s~~~~L~~~~~fL~~~lGl~  371 (556)
                            .+.|.+++.++|.+|+.+ +++++++++||+ ++|++.+++..++.+.|                         
T Consensus       172 ~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~-------------------------  225 (343)
T 3mva_O          172 LGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPG-------------------------  225 (343)
T ss_dssp             TTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTT-------------------------
T ss_pred             cCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCC-------------------------
Confidence                  445666666666666666 445666666666 36666655555554432                         


Q ss_pred             cchHhHHHhhccceeeccchhhHHHHHHH----HHHhCCCHHHHHHHHhhcccccccchhhHHHHHHHHHHHhCCChhHH
Q 008728          372 ERDIGKCLALGPELLGCSIGNKLEVNVKY----FLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDL  447 (556)
Q Consensus       372 ~~~i~~vi~~~P~iL~~s~~~~l~~kv~~----L~~lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i  447 (556)
                                 |.+++.+. +.+++++.+    |+++||+.+|++.|+.++|++|.+|.+++++|++||.+ ||+++++|
T Consensus       226 -----------~~~l~~s~-~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i  292 (343)
T 3mva_O          226 -----------AEILDLSN-DYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQI  292 (343)
T ss_dssp             -----------GGGGGCCT-THHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHH
T ss_pred             -----------hHHhhccH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHH
Confidence                       24444443 345555544    44799999999999999999999999999999999999 99999999


Q ss_pred             hhcCcccccCcccccHHHHHHHHHCCCCcccc--cccccChHHHHHHHHh
Q 008728          448 IEFPRFFSYSLEERIIPRHKIMVENRVNFKLR--YMLACSNEEFNQKVAD  495 (556)
Q Consensus       448 ~~~P~~L~ySLe~RI~pR~~~L~~~Gl~~~l~--~~L~~sd~~F~~~~~~  495 (556)
                      +++|++|+||+| ||+|||++|+++|+++++.  +||++||++|.++|+.
T Consensus       293 ~~~P~~l~~sle-ri~~R~~~L~~~g~~~~~~~~~~l~~s~~~F~~~~~~  341 (343)
T 3mva_O          293 IENPRVLDSSIS-TLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKK  341 (343)
T ss_dssp             HHSGGGGGSCHH-HHHHHHHHHHTTTCCSSSSCGGGGGSCHHHHHHHHHH
T ss_pred             HhCCHHHhcCHH-HHHHHHHHHHHCCCCCCCCcchhhcCCHHHHHHHHhc
Confidence            999999999999 9999999999999999888  9999999999999875

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=2.8e-43  Score=354.99  Aligned_cols=251  Identities=20%  Similarity=0.348  Sum_probs=227.1

Q ss_pred             HHHHHHHHHcCCChHHHHHHHhhCCcccccCcccchHHHHHHHHHcCCChhhHHHHHhhCCcccccCccccchhHHHHHH
Q 008728          250 HQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQ  329 (556)
Q Consensus       250 ~~~v~~L~~lG~~~~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~~lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~  329 (556)
                      .+++++|.++|++..+|.+....+|.+|+++++++++|+++||.++|++.+++++++.++|.+|+.++++ ++|+++||+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~   84 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH   84 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence            5788999999999988876666666669999888899999999999999999999999999999999887 999999999


Q ss_pred             HhCCChhhHhhhhhhcCccccchhhhhhHHHHHHHHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHHH-HHhCCCH
Q 008728          330 DIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYF-LSLGIKL  408 (556)
Q Consensus       330 ~lG~s~~~i~~~i~~~P~iL~~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~L-~~lG~~~  408 (556)
                      ++|++.+++.+++.++|++|++++++ ++++++||.+++|++.+++.+++.++|.+++++. ++++++++++ .++|++.
T Consensus        85 ~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~-e~~~~~v~~l~~~~G~s~  162 (270)
T 3m66_A           85 SKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSL-EPVKENMKVYRLELGFKH  162 (270)
T ss_dssp             HTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCS-HHHHHHHHHHHHTSCCCH
T ss_pred             HcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeech-HHHHHHHHHHHHHcCCCH
Confidence            99999999999999999999999885 9999999876899999999999999999999997 5799999976 5899999


Q ss_pred             HHHHHHHhhcccccccchhhHHHHHHHHHHHhCCChhHHhhcCcccccCcccccHHHHHHHHH---CCC------Ccccc
Q 008728          409 HQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVE---NRV------NFKLR  479 (556)
Q Consensus       409 ~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~ySLe~RI~pR~~~L~~---~Gl------~~~l~  479 (556)
                      +++..|+.++|++|++|.+++++|++||.++||+++++|+++|++|+||+| ||+|||.+|+.   +|+      .+++.
T Consensus       163 ~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~  241 (270)
T 3m66_A          163 NEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLD  241 (270)
T ss_dssp             HHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHH
T ss_pred             HHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHH
Confidence            999999999999999999999999999999999999999999999999999 99999988776   554      25678


Q ss_pred             cccccChHHHHHHHHhh-hhchhhhh
Q 008728          480 YMLACSNEEFNQKVADK-VEGRRLYE  504 (556)
Q Consensus       480 ~~L~~sd~~F~~~~~~~-~e~~~~f~  504 (556)
                      +++++||++|+++|++. +|+|+.|.
T Consensus       242 ~~l~~sd~~F~~~~~~~~~eey~~f~  267 (270)
T 3m66_A          242 KLVSIPDEIFCEEIAKASVQDFEKFL  267 (270)
T ss_dssp             HHHHSCHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHhcCCHHHHHHHH
Confidence            89999999999999994 79999996

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=1.9e-41  Score=352.74  Aligned_cols=308  Identities=15%  Similarity=0.220  Sum_probs=273.0

Q ss_pred             CChhhHHHHHHHCCCChHHHHHHHhh-ccCChhhHHHHHHHHHhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHHHh
Q 008728          109 SNVVPLIRWLKHNGLSYPKIAKLICM-SGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLET  187 (556)
Q Consensus       109 ~~~~~~~~~L~~~G~s~~~i~~~~~~-~~~~~~~l~~~l~~L~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s  187 (556)
                      .....+++||.++|++.+++.+.... ...+++.++++++||+++|++.++|++++.+ +|.+|.++++++.++++||++
T Consensus        17 ~~~~~~v~~L~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~-~P~lL~~~~~~l~p~l~fL~~   95 (343)
T 3mva_O           17 LKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISR-YPRAITRTPENLSKRWDLWRK   95 (343)
T ss_dssp             ---CCHHHHHHHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHH-CGGGGGCCHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHh-CcHHHhCCHHHHHHHHHHHHH
Confidence            34567899999999999998877653 4567788899999999999999999999997 999999999999999999999


Q ss_pred             CCCChhhHHHHHhhCCC-cccccHH-HHHHHHHHHHHcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHHcCCC---
Q 008728          188 NGVRRDWMGYVMSRCPQ-LLSQSIE-EVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLS---  262 (556)
Q Consensus       188 ~G~~~~~i~~lv~~~P~-iL~~s~~-~l~~~v~fL~~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~lG~~---  262 (556)
                      +|++.+++++++.++|. +++.+.+ ++.++++||+++|++.+++++++.++|++++.+.+. ..+++++|+++|++   
T Consensus        96 lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~~lgv~~g~  174 (343)
T 3mva_O           96 IVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLGH  174 (343)
T ss_dssp             TSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHHHHHHTTC
T ss_pred             cCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHHHhCCCcCC
Confidence            99999999999999999 5666664 799999999999999999999999999999986554 49999999987664   


Q ss_pred             ---hHHHHHHHhhCCcccccCcccchHHHHHHHH-HcCCChhhHHHHHhhC-CcccccCccccchhHHHHHH----HhCC
Q 008728          263 ---TEDVGRLLAFRPHLMGCGIGERWKPLVKYLY-YLGVSRDGMRRMLVIK-PMVFCFDLETTIVPKVRFFQ----DIGV  333 (556)
Q Consensus       263 ---~~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~-~lGls~~~i~~il~~~-P~iL~~~~e~~l~~kv~~L~----~lG~  333 (556)
                         .+.|.+++.++|.+++.+ +++++++++||+ ++|++.+++.+++.+. |.+++.+.+ .+++++.++.    ++|+
T Consensus       175 ~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~-~l~~~~~~l~e~~~~lG~  252 (343)
T 3mva_O          175 NDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSND-YARRSYANIKEKLFSLGC  252 (343)
T ss_dssp             SCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTT-HHHHHHHHHHHHHHTTTC
T ss_pred             CcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHH-HHHHHHHHHHHHHHHcCC
Confidence               778999999999999999 679999999999 5999999999999885 588888865 6999997776    6999


Q ss_pred             ChhhHhhhhhhcCccccchhhhhhHHHHHHHHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHHHHHhCCCHHHHHH
Q 008728          334 RDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGA  413 (556)
Q Consensus       334 s~~~i~~~i~~~P~iL~~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~L~~lG~~~~ei~~  413 (556)
                      +.+++..|+.++|++|++|.++ ++++++||++ ||++.++|    .++|++|++|.+ +|++|+++|++.|+...    
T Consensus       253 s~~ev~~~v~~~P~il~~s~~~-l~~k~~fl~~-mg~~~~~i----~~~P~~l~~sle-ri~~R~~~L~~~g~~~~----  321 (343)
T 3mva_O          253 TEEEVQKFVLSYPDVIFLAEKK-FNDKIDCLME-ENISISQI----IENPRVLDSSIS-TLKSRIKELVNAGCNLS----  321 (343)
T ss_dssp             CHHHHHHHHHTCGGGGGSCHHH-HHHHHHHHHT-TTCCHHHH----HHSGGGGGSCHH-HHHHHHHHHHTTTCCSS----
T ss_pred             CHHHHHHHHHhCCchhcccHHH-HHHHHHHHHH-cCCCHHHH----HhCCHHHhcCHH-HHHHHHHHHHHCCCCCC----
Confidence            9999999999999999999986 9999999987 99998875    589999999997 99999999999998752    


Q ss_pred             HHhhcc--cccccchhhHHHHHHH
Q 008728          414 MIADFP--MLLRYNIDIFRPKYRY  435 (556)
Q Consensus       414 ml~~~P--~lL~~s~e~l~~k~~f  435 (556)
                          .+  .+|..+.+....|+.-
T Consensus       322 ----~~~~~~l~~s~~~F~~~~~~  341 (343)
T 3mva_O          322 ----TLNITLLSWSKKRYEAKLKK  341 (343)
T ss_dssp             ----SSCGGGGGSCHHHHHHHHHH
T ss_pred             ----CCcchhhcCCHHHHHHHHhc
Confidence                34  7888888888887754

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=319.37  Aligned_cols=218  Identities=21%  Similarity=0.313  Sum_probs=187.3

Q ss_pred             chHHHHHHHHHcCCChhhHHHHHhhCCcccccCccccchhHHHHHHHhCCChhhHhhhhhhcCccccchhhhhhHHHHHH
Q 008728          284 RWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIF  363 (556)
Q Consensus       284 ~l~~~v~~L~~lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~~lG~s~~~i~~~i~~~P~iL~~s~~~~L~~~~~f  363 (556)
                      .+.+.+..|.++||++.+|++++..+|.++..    ++.+++.+|..+|++.++|++||.++|++|+++++ +|++++.|
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f  119 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence            46667777778888888888888888877643    36777888888888888888888888888888876 48888888


Q ss_pred             HHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHHHH-HhCCCHHHHHHHHhhcccccccchhhHHHHHHHHHHHhCC
Q 008728          364 LMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFL-SLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVR  442 (556)
Q Consensus       364 L~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~L~-~lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~~mg~  442 (556)
                      | +++|++..++.+++.++|++|+++. +++..++.+|. ++||+.++++.||.++|++|.+|.++|++|++||+++||+
T Consensus       120 L-~~lGl~~~~i~~ll~~~P~lL~~s~-e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl  197 (335)
T 4fp9_B          120 L-QKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGI  197 (335)
T ss_dssp             H-HHTTCTTTTHHHHHHHCGGGGTSCH-HHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCC
T ss_pred             H-HHcCCCHHHHHHHHHhCchhhccCh-HHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCC
Confidence            8 5688888888888888888888886 57888888887 6999999999999999999999999999999999999999


Q ss_pred             ChhHHhhcCcccccCcccccHHHHHHHHHCCCC-------------cccccccccChHHHHHHHHh-hhhchhhhhhccc
Q 008728          443 PLQDLIEFPRFFSYSLEERIIPRHKIMVENRVN-------------FKLRYMLACSNEEFNQKVAD-KVEGRRLYELGLI  508 (556)
Q Consensus       443 ~~~~i~~~P~~L~ySLe~RI~pR~~~L~~~Gl~-------------~~l~~~L~~sd~~F~~~~~~-~~e~~~~f~~~~~  508 (556)
                      ++.+|++ |.+|+|||+ ||+|||.||+..|..             ++|.+++.+||++|++++++ .+++|+.|.-...
T Consensus       198 ~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s~eey~~F~k~~~  275 (335)
T 4fp9_B          198 KHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKLLA  275 (335)
T ss_dssp             CHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             CHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999997 999999999 999999999999872             46889999999999999997 5899999887766


Q ss_pred             cC
Q 008728          509 NE  510 (556)
Q Consensus       509 ~e  510 (556)
                      .|
T Consensus       276 ~e  277 (335)
T 4fp9_B          276 RE  277 (335)
T ss_dssp             HH
T ss_pred             hh
Confidence            65

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=1.2e-32  Score=277.34  Aligned_cols=219  Identities=19%  Similarity=0.317  Sum_probs=179.0

Q ss_pred             hHHHHHHHHHhCCCChhhHHHHHhhCCCcccccHH-HHHHHHHHHHHcCCChhHHHHHHHhCCcccccchhhhHHHHHHH
Q 008728          177 ELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIE-EVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTY  255 (556)
Q Consensus       177 ~l~~~l~~L~s~G~~~~~i~~lv~~~P~iL~~s~~-~l~~~v~fL~~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~  255 (556)
                      +-.+++++|.++|++.++|.+....+|.+|+++++ ++.++++||+++|++++++++++.++|.+|+++.++ +.++++|
T Consensus         4 ~~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~   82 (270)
T 3m66_A            4 DHSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAY   82 (270)
T ss_dssp             HHHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHH
T ss_pred             cchHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHH
Confidence            33477888888888888887776667777888886 688888888888888888888888888888886655 8888888


Q ss_pred             HHHcCCChHHHHHHHhhCCcccccCcccchHHHHHHHH-HcCCChhhHHHHHhhCCcccccCccccchhHHHHH-HHhCC
Q 008728          256 LKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLY-YLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFF-QDIGV  333 (556)
Q Consensus       256 L~~lG~~~~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~-~lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L-~~lG~  333 (556)
                      |+++|++.++|++++.++|++|+.+++ +++++++||+ ++|++.+++.+++.++|.+++.+.+ .++++++++ +++|+
T Consensus        83 L~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~  160 (270)
T 3m66_A           83 LHSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGF  160 (270)
T ss_dssp             HHHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCC
T ss_pred             HHHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCC
Confidence            888888888888888888888888887 5888888884 7888888888888888888888876 488888875 58888


Q ss_pred             ChhhHhhhhhhcCccccchhhhhhHHHHHHHHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHHHHHh
Q 008728          334 RDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSL  404 (556)
Q Consensus       334 s~~~i~~~i~~~P~iL~~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~L~~l  404 (556)
                      +.+++..++.++|++|++|.+ +++++++||+++||++.++|    .++|++|++|.+ +|++|+.+|+.+
T Consensus       161 s~~ei~~~v~~~P~il~~s~~-~l~~k~~fL~~~mg~~~~~i----~~~P~~l~~Sle-ri~pR~~~l~~L  225 (270)
T 3m66_A          161 KHNEIQHMITRIPKMLTANKM-KLTETFDFVHNVMSIPHHII----VKFPQVFNTRLF-KVKERHLFLTYL  225 (270)
T ss_dssp             CHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTSCCCHHHH----HHCGGGGGSCHH-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCChhheecHH-HHHHHHHHHHHHhCCCHHHH----HhCchHhhCCHH-HHHHHHHHHHHh
Confidence            888888888888888888884 68888888888888887754    478888888886 888888887753

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.93  E-value=1.7e-25  Score=229.84  Aligned_cols=179  Identities=20%  Similarity=0.344  Sum_probs=97.4

Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHhhCCcccccCcccchHHHHHHHHHcCCChhhHHHHHhhCCcccccCccccchhHHHH
Q 008728          248 EMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRF  327 (556)
Q Consensus       248 ~l~~~v~~L~~lG~~~~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~~lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~  327 (556)
                      .+.+.+..|+++|+++++|+++++.+|.++..    ++.+++.||..+|++.++|++||.++|.+|+++++ .|++++.|
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f  119 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence            34455555555555555555555555555432    34455555555555555555555555555555543 25555555


Q ss_pred             HHHhCCChhhHhhhhhhcCccccchhhhhhHHHHHHHHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHHHH-HhCC
Q 008728          328 FQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFL-SLGI  406 (556)
Q Consensus       328 L~~lG~s~~~i~~~i~~~P~iL~~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~L~-~lG~  406 (556)
                      |+++|++.+++.+++.++|++|+++.++ ++.++.+|...+||+.+++..|+.++|++|++|. ++|++|++||. .+|+
T Consensus       120 L~~lGl~~~~i~~ll~~~P~lL~~s~e~-i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~-e~L~~K~efLv~~Mgl  197 (335)
T 4fp9_B          120 LQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGI  197 (335)
T ss_dssp             HHHTTCTTTTHHHHHHHCGGGGTSCHHH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTTCC
T ss_pred             HHHcCCCHHHHHHHHHhCchhhccChHH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH-HHHHHHHHHHHHHhCC
Confidence            5555555555555555555555555543 4555555544555555555555555555555553 45555555555 3666


Q ss_pred             CHHHHHHHHhhcccccccchhhHHHHHHHHHH
Q 008728          407 KLHQLGAMIADFPMLLRYNIDIFRPKYRYLRR  438 (556)
Q Consensus       407 ~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~  438 (556)
                      +.++|.    + |++|+||.++|++|..||..
T Consensus       198 ~~~eIv----k-P~~l~ySLeRIkpRH~fL~~  224 (335)
T 4fp9_B          198 KHPDIV----K-SEYLQYSLTKIKQRHIYLER  224 (335)
T ss_dssp             CHHHHH----H-TTGGGSCHHHHHHHHHHHHH
T ss_pred             CHHHcc----c-cchhhccHHHHHHHHHHHHH
Confidence            655542    2 66666666666666666654

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.47  E-value=6.4e-13  Score=116.63  Aligned_cols=185  Identities=22%  Similarity=0.333  Sum_probs=162.0

Q ss_pred             chhHHHHHHHhCCChhhHhhhhhhcCccccchhhhhhHHHHHHHHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHH
Q 008728          321 IVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKY  400 (556)
Q Consensus       321 l~~kv~~L~~lG~s~~~i~~~i~~~P~iL~~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~  400 (556)
                      +...+.-+.-+|+.++-++-++++.|+++.+++.. ++.+-.|| .++|+.+..+..++--+|.|++... ..|...+..
T Consensus        33 lldiisefillglnpepvcvvlkkspqllklpimq-mrkrssyl-qklglgegklkrvlyccpeiftmrq-qdindtvrl  109 (239)
T 4fzv_B           33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYL-QKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRL  109 (239)
T ss_dssp             TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHH-HHHHHHHH-HHHTTCSSCCHHHHHHCGGGGTSCH-HHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCceEEEecCCHHHhcChHHH-HHHHHHHH-HHhCCCccchhhheecCcHHHHHHH-hhHhHHHHH
Confidence            44555556678999999999999999999999874 88888998 6999999999999999999999885 679999999


Q ss_pred             HHH-hCCCHHHHHHHHhhcccccccchhhHHHHHHHHHHHhCCChhHHhhcCcccccCcccccHHHHHHHHHCCCC----
Q 008728          401 FLS-LGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVN----  475 (556)
Q Consensus       401 L~~-lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~ySLe~RI~pR~~~L~~~Gl~----  475 (556)
                      |++ +-|+.+++.+++..||.+|.-+...++-|+.|..-+||..+.+|++. .|+.|||. .|+.||-+|...|..    
T Consensus       110 lkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivks-eylqyslt-kikqrhiylerlgryqtpd  187 (239)
T 4fzv_B          110 LKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLT-KIKQRHIYLERLGRYQTPD  187 (239)
T ss_dssp             HHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCCC
T ss_pred             HHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhHH-HHHHHHHH-HHHHHHhHHHHhcccCCCC
Confidence            995 99999999999999999999999999999999999999999999985 69999998 599999999987751    


Q ss_pred             ---------cccccccccChHHHHHHHHh-hhhchhhhhhccccC
Q 008728          476 ---------FKLRYMLACSNEEFNQKVAD-KVEGRRLYELGLINE  510 (556)
Q Consensus       476 ---------~~l~~~L~~sd~~F~~~~~~-~~e~~~~f~~~~~~e  510 (556)
                               +-+..+|..|+++|..|-+. .+|++..|.-....|
T Consensus       188 kkgqtqipnpllkdilrvseaeflartactsveefqvfkkllare  232 (239)
T 4fzv_B          188 KKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKLLARE  232 (239)
T ss_dssp             SSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCHHHHHHHHHHHHHH
T ss_pred             ccCCccCCChHHHHHHHHhHHHHHHHHhcccHHHHHHHHHHHhhh
Confidence                     33578999999999999998 589998888655544

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.48  E-value=8.1e-07  Score=78.08  Aligned_cols=146  Identities=24%  Similarity=0.354  Sum_probs=95.2

Q ss_pred             HHHHHHHHcCCChHHHHHHHhhCCcccccCcccchHHHHHHHHHcCCChhhHHHHHhhCCcccccCccccchhHHHHHH-
Q 008728          251 QKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQ-  329 (556)
Q Consensus       251 ~~v~~L~~lG~~~~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~~lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~-  329 (556)
                      ..+.-+.-+|++++-+..++.+.|+++...+- .++.+-.||..+|+....+.+++--+|.|++..-. .+...+..|+ 
T Consensus        35 diisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqq-dindtvrllke  112 (239)
T 4fzv_B           35 DIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKE  112 (239)
T ss_dssp             HHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh-hHhHHHHHHHH
Confidence            34444555677777777777777777777765 67777777777777777777777777777776543 4777777776 


Q ss_pred             HhCCChhhHhhhhhhcCccccchhhhhhHHHHHHHHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHHHHHhC
Q 008728          330 DIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLG  405 (556)
Q Consensus       330 ~lG~s~~~i~~~i~~~P~iL~~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~L~~lG  405 (556)
                      .+-++..++.+++..||.++.-++.. +.-++.|.--.||+..-+|.+     ...+.+|+ .+|+.+.-||..+|
T Consensus       113 kclftvqqvtkilhscpsvlredlgq-leykfqyayfrmgikhpdivk-----seylqysl-tkikqrhiylerlg  181 (239)
T 4fzv_B          113 KCLFTVQQVTKILHSCPSVLREDLGQ-LEYKFQYAYFRMGIKHPDIVK-----SEYLQYSL-TKIKQRHIYLERLG  181 (239)
T ss_dssp             HSCCCHHHHHHHHHHCGGGGTSCTTH-HHHHHHHHHHTSCCCHHHHHH-----TTGGGSCH-HHHHHHHHHHHHHT
T ss_pred             hHHhhHHHHHHHHHhCcHHHHHHHhh-hhhhHhHHHHHccCCCcchhH-----HHHHHHHH-HHHHHHHhHHHHhc
Confidence            46677777777777777777766653 555555544466665554432     13444554 45555555555554

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}

Probab=96.35  E-value=0.06  Score=58.56  Aligned_cols=87  Identities=13%  Similarity=0.120  Sum_probs=39.2

Q ss_pred             HHHHHHH-HcCCChhhHHHHHhhCCcccccCccccchhHHHHHH-HhCCChhhHhhhhhhcCccccchhhhhhHHHHHHH
Q 008728          287 PLVKYLY-YLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQ-DIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFL  364 (556)
Q Consensus       287 ~~v~~L~-~lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~-~lG~s~~~i~~~i~~~P~iL~~s~~~~L~~~~~fL  364 (556)
                      .....|+ +.||++++|.+|-..+-.-=.  +| .+...+..|. ..|++.++|.+|-...-.--.+..-..+.|   -+
T Consensus       413 ~L~p~l~~~~glt~~qvv~IAsn~GGkQA--Le-~V~~llp~L~~~~glt~aqvVaIAsn~GGkQALeaV~~llp---vl  486 (1047)
T 3ugm_A          413 RLLPVLCQAHGLTPDQVVAIASHDGGKQA--LE-TVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLP---VL  486 (1047)
T ss_dssp             HHHHHHHTTSSCCHHHHHHHHSSTTTHHH--HH-HHHHHHHHHHTTSCCCHHHHHHHSSSTTHHHHHHHHHHHHH---HH
T ss_pred             hccchhhhhcCCCHHHhhhhhccCchHHH--HH-HHHHHhHHhhcccCCCHHHHHHHHhcCcHHHHHHHHHHHHH---HH
Confidence            3334444 467777777666544332111  11 2344444444 467777766655443221111110001222   12


Q ss_pred             HHHcCCCcchHhHHH
Q 008728          365 MTKAGVSERDIGKCL  379 (556)
Q Consensus       365 ~~~lGl~~~~i~~vi  379 (556)
                      ....|+++++|..|.
T Consensus       487 ~~~~gls~~qvvaiA  501 (1047)
T 3ugm_A          487 CQAHGLTPDQVVAIA  501 (1047)
T ss_dssp             HHHSCCCSHHHHHHH
T ss_pred             HHhcCCCHHHHHHHH
Confidence            234677777766553

>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}

Probab=96.06  E-value=0.31  Score=49.26  Aligned_cols=48  Identities=13%  Similarity=-0.002  Sum_probs=28.9

Q ss_pred             HHHCCCChHHHHHHHhhccCChhhHHHHHHHHHhCCCChhHHHHHHHhhCCcc
Q 008728          118 LKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNI  170 (556)
Q Consensus       118 L~~~G~s~~~i~~~~~~~~~~~~~l~~~l~~L~~lGls~~~i~~il~r~~P~l  170 (556)
                      |+.+|+|.+++.|+...   ....+..-.+.|...||+..+|..| .+ +|.-
T Consensus         8 l~~lgys~~q~~k~k~~---~~s~va~~h~~l~~~g~t~~~i~~i-s~-~~~a   55 (463)
T 4hpz_A            8 LRTLGYSQQQQEKIKPK---VRSTVAQHHEALVGHGFTHAHIVAL-SQ-HPAA   55 (463)
T ss_dssp             GGGGTCCHHHHHHHCGG---GHHHHHHHHHHHHHTTCCHHHHHHH-TT-STHH
T ss_pred             HHHhccCHHHHHHhhHH---HHHHHHHHHHHHHhcCCCHHHHHHh-hc-cHhH
Confidence            45667777777776542   2334445566677777777777643 43 4443

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}

Probab=95.65  E-value=0.14  Score=55.75  Aligned_cols=146  Identities=14%  Similarity=0.173  Sum_probs=68.7

Q ss_pred             hCCCChhhHHHHHhhCCCcccccHHHHHHHHHHHH-HcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHH-HcCCChH
Q 008728          187 TNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYL-DMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLK-EFGLSTE  264 (556)
Q Consensus       187 s~G~~~~~i~~lv~~~P~iL~~s~~~l~~~v~fL~-~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~-~lG~~~~  264 (556)
                      .+|++++++..|-+..--  ..-.+.+...+-.|. ..|++++++.+|-..-    +..-.+.+......|. +.|++++
T Consensus       354 ~~gls~~qvVaIAsn~GG--kQALe~V~~llp~L~~~~gls~~~vvaiA~~G----G~qALe~V~~L~p~l~~~~glt~~  427 (1047)
T 3ugm_A          354 AHGLTPDQVVAIASNGGG--KQALETVQRLLPVLCQAHGLTPDQVVAIASNG----GKQALETVQRLLPVLCQAHGLTPD  427 (1047)
T ss_dssp             TSCCCHHHHHHHHSSTTH--HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHT----HHHHHHHHHHHHHHHHTTSSCCHH
T ss_pred             hccCCHHHhhhhhhcCch--HHHHHHHHHhhhhhhhhcCCCHHHHHHHhccc----chhHHHHHhhccchhhhhcCCCHH
Confidence            366666666655432110  000111222233333 2577777776655420    0011122333333344 5788888


Q ss_pred             HHHHHHhhCCcccccCcccchHHHHHHHH-HcCCChhhHHHHHhhCCcccccCccccchhHHHHHH-HhCCChhhHhhhh
Q 008728          265 DVGRLLAFRPHLMGCGIGERWKPLVKYLY-YLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQ-DIGVRDEGIANML  342 (556)
Q Consensus       265 ~I~~ll~~~P~lL~~s~e~~l~~~v~~L~-~lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~-~lG~s~~~i~~~i  342 (556)
                      +|..|-..+-.--.  . +.+...+-.|+ ..|++.++|.+|-...-.--.+  | .+..-+..+. ..|++.++|.+|.
T Consensus       428 qvv~IAsn~GGkQA--L-e~V~~llp~L~~~~glt~aqvVaIAsn~GGkQAL--e-aV~~llpvl~~~~gls~~qvvaiA  501 (1047)
T 3ugm_A          428 QVVAIASHDGGKQA--L-ETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQAL--E-TVQQLLPVLCQAHGLTPDQVVAIA  501 (1047)
T ss_dssp             HHHHHHSSTTTHHH--H-HHHHHHHHHHHTTSCCCHHHHHHHSSSTTHHHHH--H-HHHHHHHHHHHHSCCCSHHHHHHH
T ss_pred             HhhhhhccCchHHH--H-HHHHHHhHHhhcccCCCHHHHHHHHhcCcHHHHH--H-HHHHHHHHHHHhcCCCHHHHHHHH
Confidence            87766554322111  1 13444445555 5788888887765543221111  1 1223333333 4788888777665


Q ss_pred             hh
Q 008728          343 VK  344 (556)
Q Consensus       343 ~~  344 (556)
                      ..
T Consensus       502 ~n  503 (1047)
T 3ugm_A          502 SN  503 (1047)
T ss_dssp             SS
T ss_pred             hc
Confidence            43

>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}

Probab=92.42  E-value=5.9  Score=40.11  Aligned_cols=279  Identities=14%  Similarity=0.150  Sum_probs=141.9

Q ss_pred             HHHHHHH--CCCChHHHHHHHhhccC--ChhhHHHHHHHHHh-CCCChhHHHHHHHhhCCccccCC-hhhHHHHHHHHHh
Q 008728          114 LIRWLKH--NGLSYPKIAKLICMSGG--NLESIRHLAEWLKS-VHVKGEFLGVALLKTGGNILERS-IEELNEIVEYLET  187 (556)
Q Consensus       114 ~~~~L~~--~G~s~~~i~~~~~~~~~--~~~~l~~~l~~L~~-lGls~~~i~~il~r~~P~lL~~s-~~~l~~~l~~L~s  187 (556)
                      ....|+.  +++|++++.+|..-.+.  -.+.+...+..|+. +|+++.++..|-..  -.  +.. .+.+...+..|..
T Consensus       131 ~~~~L~~apl~Lsp~qvVaIAsn~GGkqALeaV~~llpvL~~a~~Ls~~qVVaIAsn--~G--GkQALeaV~~llpvl~~  206 (463)
T 4hpz_A          131 WRNALTGAPLNLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPQQVVAIASN--GG--GKQALETVQRLLPVLCQ  206 (463)
T ss_dssp             THHHHHSTTTCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTS--TT--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcCCCHHHHHHHHhcCccHHHHHHHHHHHHHHhhhcCCCHHHHHHHhhc--Cc--hHHHHHHHHHHHHHhhc
Confidence            3344554  68888888888763322  22455556666653 88888888866442  10  000 1233334444443


Q ss_pred             -CCCChhhHHHHHhhCCCcccc-cHHHHHHHHHHHH-HcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHH-cCCCh
Q 008728          188 -NGVRRDWMGYVMSRCPQLLSQ-SIEEVKTRVHFYL-DMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKE-FGLST  263 (556)
Q Consensus       188 -~G~~~~~i~~lv~~~P~iL~~-s~~~l~~~v~fL~-~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~-lG~~~  263 (556)
                       +|++++++..|-+..-   +. -.+.+....-.|. ..|++.+++.+|-...-.   ..-.+.+..-.-.|+. .|++.
T Consensus       207 ~~~Ls~aqVVaIAsn~G---GkQALeaV~~llpvl~~~~gls~aqVVaIAsn~GG---kQALeaV~~llP~L~~~~gls~  280 (463)
T 4hpz_A          207 AHGLTPDQVVAIASHDG---GKQALETVQRLLPVLCQDHGLTPQQVVAIASNIGG---KQALETVQRLLPVLCQDHGLTP  280 (463)
T ss_dssp             HHCCCHHHHHHHHSSTT---HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHSSTTH---HHHHHHHHHHHHHHHHTTCCCH
T ss_pred             cccCCHHHHHHHhhccc---cHHHHHHHHhhhhhhhhhccCCHHHHHHHhcccch---HHHHHHHHhhchhhhhccCCCH
Confidence             7888888877754221   00 0122333333443 478888888877654311   1112233344444554 68888


Q ss_pred             HHHHHHHhhCCcccccCcccchHHHHHHHHH-cCCChhhHHHHHhhCCcccccCccccchhHHHHHH-HhCCChhhHhhh
Q 008728          264 EDVGRLLAFRPHLMGCGIGERWKPLVKYLYY-LGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQ-DIGVRDEGIANM  341 (556)
Q Consensus       264 ~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~~-lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~-~lG~s~~~i~~~  341 (556)
                      ++|..|-..+-.--..   +.++...-.|+. .|++.++|..|-...-.-=.  +| .+..-...|+ ..|++.++|..+
T Consensus       281 ~qVVaIAsN~GGkQAL---eaV~~l~p~Lr~~~~ls~~qVVaIAsN~GGkQA--Le-aV~~llp~Lr~~~~ls~~qVvaI  354 (463)
T 4hpz_A          281 DQVVAIASNDGGKQAL---ETVQRLLPVLCQDHGLTPEQVVAIASNGGGKQA--LE-TVQRLLPVLCQAHGLTPDQVVAI  354 (463)
T ss_dssp             HHHHHHHTSTTHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHSSTTHHHH--HH-HHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHhhhhhcCccHHHHH---HHHHHHhHHHHhhcCCCHHHhhhhhcCcchHHH--HH-HHHHhhhhcchhccCCHHHhHhh
Confidence            8887666544221111   134445555553 78888888776554422111  12 2444455555 378888887666


Q ss_pred             hhhcCccccchhhhhhHHHHHHHHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHHHHH-hCCCHHHHHHH
Q 008728          342 LVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLS-LGIKLHQLGAM  414 (556)
Q Consensus       342 i~~~P~iL~~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~L~~-lG~~~~ei~~m  414 (556)
                      -...-.-=.+.--..+-|.   |....|++..+|..|-...---  .-+ +.+....-.|.. .|++..+|..+
T Consensus       355 Asn~GGkQALeaV~~llpv---L~~a~gls~aqVVaIAsn~GGk--QAL-eaV~~llpvL~~a~gls~~qVVaI  422 (463)
T 4hpz_A          355 ASHDGGKQALETVQRLLPV---LCQDHGLTPAQAVAIANNNGGK--QAL-ETVQRLLPVLCQDHGLTPDQVVAI  422 (463)
T ss_dssp             HTSTTHHHHHHHHHHHHHH---HHHHSCCCHHHHHHHHSSSSCH--HHH-HHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             hhcCccHHHHHHHHHHhHH---HHHHhCCCHHHhhhhhccCccH--HHH-HHHHHhchhhhhhccCCHHHhhhh
Confidence            5433211111111112233   3334788888777654321000  000 223333344443 68888877655

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=92.24  E-value=1.7  Score=37.15  Aligned_cols=95  Identities=16%  Similarity=0.155  Sum_probs=54.6

Q ss_pred             HHHHHHHHhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHH------HhCCCChhhHHHHHhhCCCcccccHH---HH
Q 008728          143 RHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYL------ETNGVRRDWMGYVMSRCPQLLSQSIE---EV  213 (556)
Q Consensus       143 ~~~l~~L~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L------~s~G~~~~~i~~lv~~~P~iL~~s~~---~l  213 (556)
                      +..+..|.++||+...+.+.+.+     .+.   +...+++||      .+.|++..++...+..+.    .+..   .-
T Consensus         9 ~~~v~~l~~MGFp~~~~~kAl~~-----~g~---~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~----~~~~~~~~~   76 (118)
T 4ae4_A            9 RQCVETVVNMGYSYECVLRAMKA-----AGA---NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQ----CSEEKMMEF   76 (118)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHH-----HCS---CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCS----SCHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHH-----HCc---CHHHHHHHHHHhchhcccCCChhhhHHHHHhcc----CCccccccC
Confidence            34566777788887777777665     111   344555554      345666666655554332    1221   12


Q ss_pred             HHHHHHHHHcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHH
Q 008728          214 KTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLK  257 (556)
Q Consensus       214 ~~~v~fL~~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~  257 (556)
                      ...+.-|.++||+.+.+.+.+..+        ..++.+-++||.
T Consensus        77 ~~~v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~  112 (118)
T 4ae4_A           77 LQLMSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLM  112 (118)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHH
Confidence            345666677777777777776654        245566666664

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A

Probab=91.43  E-value=7.4  Score=39.78  Aligned_cols=215  Identities=15%  Similarity=0.176  Sum_probs=106.9

Q ss_pred             hHHHHHHH-CCCChHHHHHHHhhccC--ChhhHHHHHHHHHh-CCCChhHHHHHHHhhCCccccCC-hhhHHHHHHHHH-
Q 008728          113 PLIRWLKH-NGLSYPKIAKLICMSGG--NLESIRHLAEWLKS-VHVKGEFLGVALLKTGGNILERS-IEELNEIVEYLE-  186 (556)
Q Consensus       113 ~~~~~L~~-~G~s~~~i~~~~~~~~~--~~~~l~~~l~~L~~-lGls~~~i~~il~r~~P~lL~~s-~~~l~~~l~~L~-  186 (556)
                      .....|+. +|++++++.+|-.--+.  -.+.+...+..|.. +|+++.++..|-..  -  =+.. .+.+...+-.|+ 
T Consensus        90 ~l~p~L~~a~gLs~~qVVaIAsn~GGkqALe~V~~~lpvL~~~~~Ls~~qVVaIAsn--~--GGkQALeaV~~llpvL~~  165 (499)
T 3v6t_A           90 RLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH--D--GGKQALETVQALLPVLCQ  165 (499)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHSS--T--THHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHhhhhhhcCccHHHHHHHHHhhHHhhhhcCCCHHHhHHHhhc--C--CcHHHHHHHHHhhHHHHH
Confidence            44555666 88888888877753211  12445555556654 78888888866331  0  0000 122223333343 


Q ss_pred             hCCCChhhHHHHHhhCCCcccc-cHHHHHHHHHHHHH-cCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHH-cCCCh
Q 008728          187 TNGVRRDWMGYVMSRCPQLLSQ-SIEEVKTRVHFYLD-MGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKE-FGLST  263 (556)
Q Consensus       187 s~G~~~~~i~~lv~~~P~iL~~-s~~~l~~~v~fL~~-lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~-lG~~~  263 (556)
                      .+|++++++..|-+..-   +. -.+.+...+-.|.. .|++.+++..|-...-.   ..--+.+....-.|+. .|++.
T Consensus       166 a~gls~~qVvaIAsN~G---GkQALeaV~~llpvl~~~~gls~~qVVaiAsn~GG---kQALeaV~~llp~L~~a~~ls~  239 (499)
T 3v6t_A          166 AHGLTPEQVVAIASNGG---GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG---KQALETVQRLLPVLCQAHGLTP  239 (499)
T ss_dssp             TSCCCHHHHHHHHSSTT---HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSTTH---HHHHHHHHHHHHHHTTTSCCCH
T ss_pred             hcCCCHHHHHHHhcccc---hHHHHHHHHHhhhhHHhhccCCHHHHHHHhhccch---HHHHHHHHHhhhHHHhhcCCCH
Confidence            38888888877754211   00 01223333344443 78888888876554311   0011223333334443 58888


Q ss_pred             HHHHHHHhhCCcccccCcccchHHHHHHHHH-cCCChhhHHHHHhhCCcccccCccccchhHHHHHH-HhCCChhhHhhh
Q 008728          264 EDVGRLLAFRPHLMGCGIGERWKPLVKYLYY-LGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQ-DIGVRDEGIANM  341 (556)
Q Consensus       264 ~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~~-lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~-~lG~s~~~i~~~  341 (556)
                      .+|..+-...-.--.  . +.+....-.|+. .|++.++|..|-...-.-=.  +| .+..-...|+ ..|++.++|..|
T Consensus       240 ~qVvaIAsN~GGkQA--L-eaV~~~lpvl~~~~~lt~aqVVaIAsn~GGkQA--Le-aV~~llpvL~~~~~L~~~qVvaI  313 (499)
T 3v6t_A          240 QQVVAIASNGGGKQA--L-ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQA--LE-TVQRLLPVLCQAHGLTPQQVVAI  313 (499)
T ss_dssp             HHHHHHHHSSCHHHH--H-HHHHHHHHHHHHHHCCCHHHHHHHHSSTTHHHH--HH-HHHHHHHHHHTTTCSCHHHHHHH
T ss_pred             HHhhhhhcccchHHH--H-HHHHHhcccccccccCCHHHeeeeccCCccHHH--HH-HHHHhhHHHHHhcCCCHHHHHHH
Confidence            877665543321000  1 133344444553 77888777765432211000  11 2333344444 457777776555


Q ss_pred             hh
Q 008728          342 LV  343 (556)
Q Consensus       342 i~  343 (556)
                      -.
T Consensus       314 As  315 (499)
T 3v6t_A          314 AS  315 (499)
T ss_dssp             HT
T ss_pred             hh
Confidence            33

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A

Probab=90.80  E-value=6.6  Score=40.12  Aligned_cols=208  Identities=13%  Similarity=0.158  Sum_probs=121.1

Q ss_pred             HCCCChHHHHHHHhhccC--ChhhHHHHHHHHHh-CCCChhHHHHHHHhhCCccccC-ChhhHHHHHHHHHh-CCCChhh
Q 008728          120 HNGLSYPKIAKLICMSGG--NLESIRHLAEWLKS-VHVKGEFLGVALLKTGGNILER-SIEELNEIVEYLET-NGVRRDW  194 (556)
Q Consensus       120 ~~G~s~~~i~~~~~~~~~--~~~~l~~~l~~L~~-lGls~~~i~~il~r~~P~lL~~-s~~~l~~~l~~L~s-~G~~~~~  194 (556)
                      -++++++++.+|..-.+.  -.+.+...+..|.. +|+++.++..|-..  --  +. -.+.+...+..|.. +|+++++
T Consensus        64 pl~ls~~qvvaIA~n~GGkqAleaV~~l~p~L~~a~gLs~~qVVaIAsn--~G--GkqALe~V~~~lpvL~~~~~Ls~~q  139 (499)
T 3v6t_A           64 PLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH--DG--GKQALETVQRLLPVLCQAHGLTPEQ  139 (499)
T ss_dssp             TTCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHSS--TT--HHHHHHHHHHHHHHHHHTSCCCHHH
T ss_pred             CcCCCHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCHHHhhhhhhc--Cc--cHHHHHHHHHhhHHhhhhcCCCHHH
Confidence            369999999998863322  12445555556655 99999999876442  00  00 01233444445554 8999999


Q ss_pred             HHHHHhhCCCcccc-cHHHHHHHHHHHH-HcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHH-cCCChHHHHHHHh
Q 008728          195 MGYVMSRCPQLLSQ-SIEEVKTRVHFYL-DMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKE-FGLSTEDVGRLLA  271 (556)
Q Consensus       195 i~~lv~~~P~iL~~-s~~~l~~~v~fL~-~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~-lG~~~~~I~~ll~  271 (556)
                      +..|-+..-   +. -.+.+...+-.|. ..|++++++.+|-...-.   ..-.+.+..-.-.|+. .|+++++|..|-.
T Consensus       140 VVaIAsn~G---GkQALeaV~~llpvL~~a~gls~~qVvaIAsN~GG---kQALeaV~~llpvl~~~~gls~~qVVaiAs  213 (499)
T 3v6t_A          140 VVAIASHDG---GKQALETVQALLPVLCQAHGLTPEQVVAIASNGGG---KQALETVQRLLPVLCQAHGLTPQQVVAIAS  213 (499)
T ss_dssp             HHHHHSSTT---HHHHHHHHHHHHHHHHHTSCCCHHHHHHHHSSTTH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHS
T ss_pred             hHHHhhcCC---cHHHHHHHHHhhHHHHHhcCCCHHHHHHHhcccch---HHHHHHHHHhhhhHHhhccCCHHHHHHHhh
Confidence            988753211   00 0122444444554 489999999986654211   0112334444445555 8999999987654


Q ss_pred             hCCcccccCcccchHHHHHHHHH-cCCChhhHHHHHhhCCcccccCccccchhHHHHHH-HhCCChhhHhhhhh
Q 008728          272 FRPHLMGCGIGERWKPLVKYLYY-LGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQ-DIGVRDEGIANMLV  343 (556)
Q Consensus       272 ~~P~lL~~s~e~~l~~~v~~L~~-lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~-~lG~s~~~i~~~i~  343 (556)
                      .+-.--.  . +.++...-.|+. .|++..+|..|-...-.-=.  ++ .+..-.-.|+ ..|++.++|..+-.
T Consensus       214 n~GGkQA--L-eaV~~llp~L~~a~~ls~~qVvaIAsN~GGkQA--Le-aV~~~lpvl~~~~~lt~aqVVaIAs  281 (499)
T 3v6t_A          214 NGGGKQA--L-ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQA--LE-TVQRLLPVLCQAHGLTPQQVVAIAS  281 (499)
T ss_dssp             STTHHHH--H-HHHHHHHHHHTTTSCCCHHHHHHHHHSSCHHHH--HH-HHHHHHHHHHHHHCCCHHHHHHHHS
T ss_pred             ccchHHH--H-HHHHHhhhHHHhhcCCCHHHhhhhhcccchHHH--HH-HHHHhcccccccccCCHHHeeeecc
Confidence            3311101  1 245555555664 79999999887765532111  12 2444445555 48999999877643

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=87.56  E-value=1.1  Score=32.49  Aligned_cols=33  Identities=6%  Similarity=0.132  Sum_probs=26.5

Q ss_pred             hccceeeccchhhHHHHHHHHHHhCCCHHHHHHHHhh
Q 008728          381 LGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIAD  417 (556)
Q Consensus       381 ~~P~iL~~s~~~~l~~kv~~L~~lG~~~~ei~~ml~~  417 (556)
                      .+|.+-..    -+..|++||++.|++.+||..++.+
T Consensus        21 ~dp~V~~s----p~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           21 QNSRVRQS----PLATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             HCTTGGGS----CHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CChhhhcC----CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            45666443    4778999999999999999988765

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=87.48  E-value=12  Score=31.67  Aligned_cols=100  Identities=15%  Similarity=0.138  Sum_probs=54.4

Q ss_pred             HHHHHHHhCCCChhhHHHHHhhCCCcccccHHHHHHHH---HHHHHcCCChhHHHHHHHhCCcccccchhhhHHHHHHHH
Q 008728          180 EIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRV---HFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYL  256 (556)
Q Consensus       180 ~~l~~L~s~G~~~~~i~~lv~~~P~iL~~s~~~l~~~v---~fL~~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L  256 (556)
                      ..+..|.+.||+...+.+.+..+-   . +++.....+   .-|.+.|+++.++-..+..+..--.  ........|.-|
T Consensus        10 ~~v~~l~~MGFp~~~~~kAl~~~g---~-~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~--~~~~~~~~v~~L   83 (118)
T 4ae4_A           10 QCVETVVNMGYSYECVLRAMKAAG---A-NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEE--KMMEFLQLMSKF   83 (118)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHC---S-CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHC---c-CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCcc--ccccCHHHHHHH
Confidence            356667777888777777766544   2 343322111   1233567777666666554321100  011233456667


Q ss_pred             HHcCCChHHHHHHHhhCCcccccCcccchHHHHHHHH
Q 008728          257 KEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLY  293 (556)
Q Consensus       257 ~~lG~~~~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~  293 (556)
                      .++||+...+.+.+..+        .+++..-++||.
T Consensus        84 ~eMGF~~~~a~~AL~~~--------~nd~erAlewL~  112 (118)
T 4ae4_A           84 KEMGFELKDIKEVLLLH--------NNDQDNALEDLM  112 (118)
T ss_dssp             HHTTCCHHHHHHHHHHT--------TTCHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHc--------CCCHHHHHHHHH
Confidence            77777777776666543        235666666665

>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A

Probab=81.98  E-value=2.5  Score=32.37  Aligned_cols=34  Identities=6%  Similarity=0.106  Sum_probs=27.1

Q ss_pred             hccceeeccchhhHHHHHHHHHHhCCCHHHHHHHHhhc
Q 008728          381 LGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADF  418 (556)
Q Consensus       381 ~~P~iL~~s~~~~l~~kv~~L~~lG~~~~ei~~ml~~~  418 (556)
                      .+|.+-..    -+..|++||++.|++.+||..++.+.
T Consensus        26 qdp~V~~s----p~~~K~~FL~sKGLt~eEI~~Al~ra   59 (70)
T 2w84_A           26 QNSRVRQS----PLATRRAFLKKKGLTDEEIDMAFQQS   59 (70)
T ss_dssp             CSTTGGGS----CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CChhhhhC----CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence            46666433    37789999999999999999888763

>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}

Probab=80.31  E-value=20  Score=32.52  Aligned_cols=137  Identities=9%  Similarity=0.042  Sum_probs=80.0

Q ss_pred             HHHHHHHCCCChHHHHHHHhhccCChhhHHHHHHHHHhCCC-ChhHHHHHHHhhCCccccCChhhHHHHHHHHHhCCCCh
Q 008728          114 LIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHV-KGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRR  192 (556)
Q Consensus       114 ~~~~L~~~G~s~~~i~~~~~~~~~~~~~l~~~l~~L~~lGl-s~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s~G~~~  192 (556)
                      .+.+|....-|..++..-.....++.+.+..+++.|.+.|+ +....+....+ .- +- ....-...+..-|+..|++.
T Consensus        24 Al~~Ls~r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr-~~-~~-~~~~G~~~I~~eL~~KGI~~  100 (177)
T 3e3v_A           24 ALNYLSYQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNYAESYVR-TM-MN-TSDKGPKVIKLNLSKKGIDD  100 (177)
T ss_dssp             HHHHHHSSCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHH-HH-HH-HCCCCHHHHHHHHHTTTCCH
T ss_pred             HHHHhccccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HH-HH-cccccHHHHHHHHHHcCCCH
Confidence            45666666777777766655556677888888999998887 45555544443 11 00 00112334456788899999


Q ss_pred             hhHHHHHhhCCCcccccHH-HHHHHHHHHHHcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHHcCCChHHHHHHHh
Q 008728          193 DWMGYVMSRCPQLLSQSIE-EVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLA  271 (556)
Q Consensus       193 ~~i~~lv~~~P~iL~~s~~-~l~~~v~fL~~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~lG~~~~~I~~ll~  271 (556)
                      +.|...+...+      .+ ........++          +-+..++..   ...+.-...+.||..-|++.+.|..++.
T Consensus       101 ~~I~~al~~~~------~~de~e~a~~l~~----------Kk~~~~~~~---~~~~~~~K~~~~L~rrGF~~~~I~~vl~  161 (177)
T 3e3v_A          101 NIAEDALILYT------DKLQVEKGVTLAE----------KLANRYSHD---SYRNKQNKIKQSLLTKGFSYDIIDTIIQ  161 (177)
T ss_dssp             HHHHHHHTTSC------HHHHHHHHHHHHH----------HHHHHTTTS---CHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHhCC------chhHHHHHHHHHH----------HHHhhccCC---ChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            99888886532      22 1222222221          111122211   1223345667799999999998888776


Q ss_pred             h
Q 008728          272 F  272 (556)
Q Consensus       272 ~  272 (556)
                      .
T Consensus       162 ~  162 (177)
T 3e3v_A          162 E  162 (177)
T ss_dssp             H
T ss_pred             H
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00