Citrus Sinensis ID: 008742

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-----
MAHWISNKLKVAETFLQQIDQQAAESLGKGDKPRSEDPQIDGPSKSSGSVSLKDQLKKRTQEINDYRGKLQSDPNVKNVYNRNNSFTSSKETKPKSTLTDSDWTELLGTPDKGLSLGNVRKDERRRQGGTLGNRNRKINKNSSLIKSGWSKVNGGNKPSDGDESGSSGRSSSVELQNDGKNINGQDVKPQDGRSKENDDVKKNSRLEMVSVPGKVDAFSDVKIGMNDVDGRLPSNIRGNHKSNAGIRASVLNDSKRGSSSTSEDGSDSNSDSSSSESESEREREERRKLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRMLSLAFFHMDGIIETSSLSIITLLLFMERMVIFF
cHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccHHHcccccccccccccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcc
cccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHccccccHHHccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccHHHHHccccccHHHHHHHccccccHcccccccccccccccccccccccccccHHHHHHccccccccccccHHHHHHHHHHHHHHccccEEccHHHHHHHHHHHHcHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcccccccccEEccccEEEccHHHHHHHHHHHHHHHHcc
MAHWISNKLKVAETFLQQIDQQAAEslgkgdkprsedpqidgpskssgsvslKDQLKKRTQEINDYrgklqsdpnvknvynrnnsftssketkpkstltdsdwtellgtpdkglslgnvrkderrrqggtlgnrnrkinknssliksgwskvnggnkpsdgdesgssgrsssvelqndgkningqdvkpqdgrskenddvkknsrlemvsvpgkvdafsdvkigmndvdgrlpsnirgnhksnagIRASvlndskrgssstsedgsdsnsdsssseseSEREREERRKLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELsqrnsnthqTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMtrkeiedpTEVEIELKRRLGQLTDHLIQKQaqvfplnflpgrttiPVMRMLSLAFFHMDGIIETSSLSIITLLLFMERMVIFF
MAHWISNKLKVAETFLQQIDQQAAeslgkgdkprsedpqidgpskssgsvslkdqLKKRTQEINdyrgklqsdpnvknvynrnnsftssketkpkstltdsdwtellgtpdkglslgnvrkderrrqggtlgnrnrkinknssliksgwskvnggnkpsdgdesgssgRSSSVelqndgkningqdvkpqdgrskenddvkknsrlemvsvpgkvdafsdvkigmndvdgrlpsnirgnhksnagirasvlndskrgssstsedgsdsnsdsssseseserereERRKLKEKILAEKaaakagdaikerENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAheelsqrnsnthqtgiyLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEgniemtrkeiedptevEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRMLSLAFFHMDGIIETSSLSIITLLLFMERMVIFF
MAHWISNKLKVAETFLQQIDQQAAESLGKGDKPRSEDPQIDGPSKSSGSVSLKDQLKKRTQEINDYRGKLQSDPNVKNVYNRNNSFTSSKETKPKSTLTDSDWTELLGTPDKGLSLGNVRKDERRRQGGTLGNRNRKINKNSSLIKSGWSKVNGGNKPsdgdesgssgrsssVELQNDGKNINGQDVKPQDGRSKENDDVKKNSRLEMVSVPGKVDAFSDVKIGMNDVDGRLPSNIRGNHKSNAGIRASVLNdskrgssstsedgsdsnsdsssseseserereerrklkekilaekaaakagdaikerENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETanadlaralaaaQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRMLSLAFFHMDGiietsslsiitlllFMERMVIFF
********LKVAETF******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************L******************************************************TGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKA*******************VEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRMLSLAFFHMDGIIETSSLSIITLLLFMERMVIF*
**HWIS*KLKVAETF*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IPVMRMLSLAFFHMDGIIETSSLSIITLLLFMERMVIFF
MAHWISNKLKVAETFLQQIDQQ***********************************KRTQEINDYRGKLQSDPNVKNVYNRNN***************DSDWTELLGTPDKGLSLGNVRKDERRRQGGTLGNRNRKINKNSSLIKSGWSKV**********************LQNDGKNINGQDVK***********VKKNSRLEMVSVPGKVDAFSDVKIGMNDVDGRLPSNIRGNHKSNAGIRASVL************************************KLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRMLSLAFFHMDGIIETSSLSIITLLLFMERMVIFF
**HWISNKLKVAETFLQQIDQQAAE*********************************************************************************************************************************************************************************NSRLEMVSVPGKVDAFSDVKIGMNDVDGRLPSNIRGNHKSNAG*R*SVLNDSKRG*****************************RKLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRMLSLAFFHMDGIIETSSLSIITLLLFMERMVIFF
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MAHWISNKLKVAETFLQQIDQQAAESLGKGDKPRSEDPQIDGPSKSSGSVSLKDQLKKRTQEINDYRGKLQSDPNVKNVYNRNNSFTSSKETKPKSTLTDSDWTELLGTPDKGLSLGNVRKDERRRQGGTLGNRNRKINKNSSLIKSGWSKVNGGNKPSDGDESGSSGRSSSVELQNDGKNINGQDVKPQDGRSKENDDVKKNSRLEMVSVPGKVDAFSDVKIGMNDVDGRLPSNIRGNHKSNAGIRASVLNDSKRGSSSTSEDGSDSNSDxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKAGDAxxxxxxxxxxxxxxxxxxxxxxxxxxxxQVKEASELQTSMMETMDAFELExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNSNTHQTGIYLKRLAASKGVEFExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRMLSLAFFHMDGIIETSSLSIITLLLFMERMVIFF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query555 2.2.26 [Sep-21-2011]
B0F9L7668 Golgin candidate 2 OS=Ara yes no 0.888 0.738 0.452 1e-85
>sp|B0F9L7|GOGC2_ARATH Golgin candidate 2 OS=Arabidopsis thaliana GN=GC2 PE=1 SV=1 Back     alignment and function desciption
 Score =  317 bits (813), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 250/552 (45%), Positives = 315/552 (57%), Gaps = 59/552 (10%)

Query: 1   MAHWISNKLKVAETFLQQIDQQAAESLGKGDKPRSEDPQID-GPSKSSGSVSLKDQLKKR 59
           MA+WIS+KLK AET LQQ+DQQAA+SL K +K  + D   +  P   S  VSLKDQL+K+
Sbjct: 1   MANWISSKLKAAETILQQLDQQAADSLRKDEKSETHDEVFETSPKSGSSPVSLKDQLRKK 60

Query: 60  TQEIND-----YRGKLQSDPNV----KNV-----YNRNNSFTSSKETKPKSTLTDSDWTE 105
           T E +D      R   +  P+     K V      +   S  S   T+  + LTD+DWTE
Sbjct: 61  TYEGSDSGSGSQRNSTEQKPSYLSSSKKVRKPDQSHERTSAPSQSLTQDNTKLTDNDWTE 120

Query: 106 LLGTPDKGLSLGNVRKDERRRQGGTLGNRNRKINKNSSLIKSGWSKVNGGNKP--SDGDE 163
           LL TP++  S    R       GGT   R         L K G    N G  P  SDG +
Sbjct: 121 LLSTPNQRTSTSTSRSP-----GGTSAIRG--------LKKDGKRHGNLGKNPLVSDGKK 167

Query: 164 SGSS------GRSSSVELQNDGKNINGQDVKPQDGRSKEND---DVKKNS--RLEMVSVP 212
           S SS      GR    + Q + +  + +   P D   K  +   D+  NS  +     V 
Sbjct: 168 SSSSNVVNSRGRP---QKQTNKEPSDKEVSSPSDADMKNRNAPRDIFVNSTHKESEKDVS 224

Query: 213 GKVDAFSDVKIGMNDVDGRLPSNIRGNHKSNAGIRASVLNDSKRG--SSSTSEDG----- 265
           GK     D +   N+   R  S   G        R+SV     R   S S   DG     
Sbjct: 225 GKTPPLDDSRRSANETLPRETSPSVGKRDGRESRRSSVWGKQVREEVSQSNVSDGLTRKE 284

Query: 266 --------SDSNSDSSSSESESEREREERRKLKEKILAEKAAAKAGDAIKERENMVARLE 317
                          SS++SE ER+REERR+ +E++ AEK A KA   IKERENMVARLE
Sbjct: 285 SSLSSDESESDYESDSSTDSERERQREERRRRRERVFAEKVATKAVAVIKERENMVARLE 344

Query: 318 GEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETAN 377
           GEK SLEKI+EERAKQQ +EA+ELQT+MMET++A +LEKQ+HNNTRME L  LA LE  N
Sbjct: 345 GEKLSLEKIVEERAKQQAQEAAELQTNMMETLEAADLEKQKHNNTRMEVLTRLAGLEAEN 404

Query: 378 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKG 437
           A+L R+LAA QKKLE + +QVA L+QQ ELKE   EEL +   N    G  LK+L  S+G
Sbjct: 405 AELTRSLAAGQKKLETQIDQVAVLKQQVELKESTLEELKRNTFNIGGRGTTLKQLDTSRG 464

Query: 438 VEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDH 497
            +FE ++LEAE + + DKI +L+DKA KLE +IEM RKE+E+PTEVEIELKRRL QLTDH
Sbjct: 465 DKFEHQMLEAEISLLTDKIGRLQDKATKLEADIEMMRKELEEPTEVEIELKRRLNQLTDH 524

Query: 498 LIQKQAQVFPLN 509
           LIQKQ+QV  L+
Sbjct: 525 LIQKQSQVEALS 536
Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query555
225456134 682 PREDICTED: golgin candidate 2-like [Viti 0.900 0.733 0.535 1e-123
356527890 689 PREDICTED: golgin candidate 2-like [Glyc 0.897 0.722 0.500 1e-111
255583467 691 Golgin-84, putative [Ricinus communis] g 0.868 0.697 0.508 1e-109
356511261 689 PREDICTED: golgin candidate 2-like [Glyc 0.877 0.706 0.508 1e-102
357521611 667 Golgin candidate [Medicago truncatula] g 0.886 0.737 0.476 8e-93
449497585 662 PREDICTED: golgin candidate 2-like [Cucu 0.902 0.756 0.480 4e-90
449439557 716 PREDICTED: golgin candidate 2-like [Cucu 0.911 0.706 0.450 1e-85
224135521567 predicted protein [Populus trichocarpa] 0.392 0.384 0.733 3e-84
30685736 668 golgin candidate 2 [Arabidopsis thaliana 0.888 0.738 0.452 8e-84
297734312479 unnamed protein product [Vitis vinifera] 0.727 0.843 0.5 1e-83
>gi|225456134|ref|XP_002278278.1| PREDICTED: golgin candidate 2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 302/564 (53%), Positives = 365/564 (64%), Gaps = 64/564 (11%)

Query: 1   MAHWISNKLKVAETFLQQIDQQAAESLGKGDKPRSEDPQIDGPSKSSGSVSLKDQLKKRT 60
           MA WIS+KLKVAET LQQIDQQAAESLGK ++P+S++     P+KS G + LKDQLKK+T
Sbjct: 1   MAGWISSKLKVAETLLQQIDQQAAESLGKNERPQSDELDEKIPAKSGGVLPLKDQLKKKT 60

Query: 61  QEINDYRGKLQSDPNVKNVYN---RNNSFTSSKE--TKPKSTLTDSDWTELLGTPDKGLS 115
           QE  D++GKL SDPNV NV N   R+   TS  +  + P+S LTDSDWTELL TP++   
Sbjct: 61  QESYDFQGKLHSDPNV-NVLNSQDRDKEVTSPSKPFSSPRSNLTDSDWTELLSTPNQETP 119

Query: 116 LG-----------NVRKDERRRQGGTL------GNRNRKINKNSSLIKSGWSKVNGGNKP 158
            G            +RKD RR+    L        RN + N NS+      S V  GN+ 
Sbjct: 120 FGANRTNGTSGIRGLRKDGRRQASSGLNLSGLEAKRNYRSN-NSASKPQRRSDVGPGNRE 178

Query: 159 SDG-------DE-----SGSSGRSSSVELQNDGKNINGQ----------DVKPQDGRSKE 196
           + G       DE     S S  R+SS EL+NDGK +  Q          D  P+    K+
Sbjct: 179 NAGGLDRKLSDEKELGRSDSVDRTSSAELRNDGKYVEAQESELVMVVGDDSNPERSVVKD 238

Query: 197 N-----------DDVKKNSRLEMVSVPGKVDAFSDVKIGMNDVDGRLPSNIRGNHKSNAG 245
           +             V KN  LE   V  + D   D+   +ND   RL        +SNAG
Sbjct: 239 SVEDGGRIISKGHSVDKNHHLETKLVAERGDRIPDMNKAINDEQKRLG-------QSNAG 291

Query: 246 IRASVLNDSKRGSSSTSEDGSDSNSDSSSSESESEREREERRKLKEKILAEKAAAKAGDA 305
           + +SV  + K  +S + E        +SSS+SESER REER++ +++ILAEK AAKA  A
Sbjct: 292 LGSSVSLELKGTTSVSDERSDSDTDSASSSDSESERIREERKRRRKQILAEKQAAKAVAA 351

Query: 306 IKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRME 365
           IKERENMVARLEGEK+SLEKILEER KQQ +EASELQT+MMETM+A ELEKQ+HNNTRME
Sbjct: 352 IKERENMVARLEGEKESLEKILEEREKQQAQEASELQTTMMETMEAVELEKQKHNNTRME 411

Query: 366 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQT 425
           AL  LAKLET NA+LAR+LA AQ  LE+E N+VAE+RQQ ELKEVA EE  +R  N HQ 
Sbjct: 412 ALARLAKLETVNAELARSLATAQWNLEVEVNRVAEIRQQIELKEVALEEQRRRIPNAHQM 471

Query: 426 GIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEI 485
           G  L  L A+KGVEFE+EILEAEY+FI DKI  L+DKAKKLE NIEMTRKE+E PT VE+
Sbjct: 472 GTSLSHLVAAKGVEFEKEILEAEYSFITDKIGWLQDKAKKLEANIEMTRKEMESPTVVEV 531

Query: 486 ELKRRLGQLTDHLIQKQAQVFPLN 509
           ELKRRL QLTDHLIQKQAQV  L+
Sbjct: 532 ELKRRLFQLTDHLIQKQAQVEALS 555

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356527890|ref|XP_003532539.1| PREDICTED: golgin candidate 2-like [Glycine max] Back     alignment and taxonomy information
>gi|255583467|ref|XP_002532492.1| Golgin-84, putative [Ricinus communis] gi|223527791|gb|EEF29891.1| Golgin-84, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356511261|ref|XP_003524345.1| PREDICTED: golgin candidate 2-like [Glycine max] Back     alignment and taxonomy information
>gi|357521611|ref|XP_003631094.1| Golgin candidate [Medicago truncatula] gi|355525116|gb|AET05570.1| Golgin candidate [Medicago truncatula] Back     alignment and taxonomy information
>gi|449497585|ref|XP_004160442.1| PREDICTED: golgin candidate 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449439557|ref|XP_004137552.1| PREDICTED: golgin candidate 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224135521|ref|XP_002322094.1| predicted protein [Populus trichocarpa] gi|222869090|gb|EEF06221.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|30685736|ref|NP_173257.2| golgin candidate 2 [Arabidopsis thaliana] gi|205779900|sp|B0F9L7.1|GOGC2_ARATH RecName: Full=Golgin candidate 2; Short=AtGC2 gi|164708706|gb|ABY67250.1| putative golgin-84-like protein [Arabidopsis thaliana] gi|332191564|gb|AEE29685.1| golgin candidate 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297734312|emb|CBI15559.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query555
TAIR|locus:2194075668 GC2 "AT1G18190" [Arabidopsis t 0.360 0.299 0.615 2.2e-78
UNIPROTKB|E1C947735 GOLGA5 "Uncharacterized protei 0.331 0.250 0.25 4.9e-08
UNIPROTKB|Q6GNT7722 golga5 "Golgin subfamily A mem 0.306 0.235 0.247 1.5e-05
UNIPROTKB|F1RR74606 LOC100515063 "Uncharacterized 0.318 0.292 0.270 8.9e-05
UNIPROTKB|K7GMY0626 LOC100515063 "Uncharacterized 0.318 0.282 0.270 9.7e-05
UNIPROTKB|E1BKT9 2889 DSP "Uncharacterized protein" 0.318 0.061 0.240 0.00012
UNIPROTKB|K7GSC4713 LOC100515063 "Uncharacterized 0.318 0.248 0.270 0.00013
RGD|2935 1217 Itsn1 "intersectin 1 (SH3 doma 0.327 0.149 0.307 0.00014
UNIPROTKB|Q9WVE9 1217 Itsn1 "Intersectin-1" [Rattus 0.327 0.149 0.307 0.00014
UNIPROTKB|I3LED2703 LOC100515063 "Uncharacterized 0.318 0.251 0.270 0.00016
TAIR|locus:2194075 GC2 "AT1G18190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 580 (209.2 bits), Expect = 2.2e-78, Sum P(2) = 2.2e-78
 Identities = 123/200 (61%), Positives = 149/200 (74%)

Query:   310 ENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQL 369
             ENMVARLEGEK SLEKI+EERAKQQ +EA+ELQT+MMET++A +LEKQ+HNNTRME L  
Sbjct:   337 ENMVARLEGEKLSLEKIVEERAKQQAQEAAELQTNMMETLEAADLEKQKHNNTRMEVLTR 396

Query:   370 LAKLETXXXXXXXXXXXXQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL 429
             LA LE             QKKLE + +QVA L+QQ ELKE   EEL +   N    G  L
Sbjct:   397 LAGLEAENAELTRSLAAGQKKLETQIDQVAVLKQQVELKESTLEELKRNTFNIGGRGTTL 456

Query:   430 KRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKR 489
             K+L  S+G +FE ++LEAE + + DKI +L+DKA KLE +IEM RKE+E+PTEVEIELKR
Sbjct:   457 KQLDTSRGDKFEHQMLEAEISLLTDKIGRLQDKATKLEADIEMMRKELEEPTEVEIELKR 516

Query:   490 RLGQLTDHLIQKQAQVFPLN 509
             RL QLTDHLIQKQ+QV  L+
Sbjct:   517 RLNQLTDHLIQKQSQVEALS 536
GO:0003674 "molecular_function" evidence=ND
GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0008150 "biological_process" evidence=ND
GO:0009630 "gravitropism" evidence=RCA
UNIPROTKB|E1C947 GOLGA5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q6GNT7 golga5 "Golgin subfamily A member 5" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|F1RR74 LOC100515063 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|K7GMY0 LOC100515063 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BKT9 DSP "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|K7GSC4 LOC100515063 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|2935 Itsn1 "intersectin 1 (SH3 domain protein)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9WVE9 Itsn1 "Intersectin-1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LED2 LOC100515063 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query555
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-04
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 5e-04
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.001
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 0.002
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.004
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.004
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 57/255 (22%), Positives = 100/255 (39%), Gaps = 12/255 (4%)

Query: 255 KRGSSSTSEDGSDSNSDSSSSESESEREREERRKLKEKILAEKAAAKAGDAIKERENMVA 314
             GS +       S+        E E E  E     EK+  E  + K  + ++  E+++ 
Sbjct: 648 PSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLK--NELRSLEDLLE 705

Query: 315 RLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLE 374
            L   +    +   E  K+++    E    +   ++  E E +       E  + L +LE
Sbjct: 706 ELR-RQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELE 764

Query: 375 TANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAA 434
                L  ALA    KL+ E  ++ E RQ  + +    EE  +                 
Sbjct: 765 EELESLEEALA----KLKEEIEELEEKRQALQEELEELEEELEEA-----ERRLDALERE 815

Query: 435 SKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQL 494
            + +E  RE LE E   + ++I +LE+K  +LE  +E   KE+E+  E   EL+    +L
Sbjct: 816 LESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEEL 875

Query: 495 TDHLIQKQAQVFPLN 509
            D L + + +   L 
Sbjct: 876 EDELKELEEEKEELE 890

Length = 1163
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 555
KOG4677554 consensus Golgi integral membrane protein [Intrace 99.92
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 99.91
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 97.82
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 97.75
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.64
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.56
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 97.02
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.86
PHA02562 562 46 endonuclease subunit; Provisional 96.85
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 96.84
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.84
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.77
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.74
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 96.72
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 96.62
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 96.51
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 96.22
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 96.2
PRK02224 880 chromosome segregation protein; Provisional 96.18
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 96.08
PRK02224 880 chromosome segregation protein; Provisional 96.07
PRK11637 428 AmiB activator; Provisional 96.04
PF05701522 WEMBL: Weak chloroplast movement under blue light; 96.01
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 95.95
PRK03918 880 chromosome segregation protein; Provisional 95.86
PF00038312 Filament: Intermediate filament protein; InterPro: 95.83
PRK04863 1486 mukB cell division protein MukB; Provisional 95.79
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 95.78
PHA02562 562 46 endonuclease subunit; Provisional 95.72
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 95.62
PRK04863 1486 mukB cell division protein MukB; Provisional 95.53
PRK03918 880 chromosome segregation protein; Provisional 95.35
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 95.2
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 95.02
TIGR01843 423 type_I_hlyD type I secretion membrane fusion prote 94.96
PF05701 522 WEMBL: Weak chloroplast movement under blue light; 94.85
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 94.82
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 94.58
PRK09039343 hypothetical protein; Validated 94.45
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 94.41
KOG0996 1293 consensus Structural maintenance of chromosome pro 94.25
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 94.23
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 94.17
PF14662193 CCDC155: Coiled-coil region of CCDC155 94.15
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 94.14
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 94.13
PRK09039343 hypothetical protein; Validated 94.02
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 94.02
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 93.87
PF05335188 DUF745: Protein of unknown function (DUF745); Inte 93.85
PF12777344 MT: Microtubule-binding stalk of dynein motor; Int 93.85
PF14362301 DUF4407: Domain of unknown function (DUF4407) 93.79
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 93.77
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 93.7
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 93.25
KOG4809654 consensus Rab6 GTPase-interacting protein involved 93.21
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 92.83
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 92.76
PRK11281 1113 hypothetical protein; Provisional 92.46
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 92.41
PF06120301 Phage_HK97_TLTM: Tail length tape measure protein; 92.37
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 91.91
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 91.76
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 91.55
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 91.54
KOG0933 1174 consensus Structural maintenance of chromosome pro 91.53
KOG0249 916 consensus LAR-interacting protein and related prot 91.14
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 90.76
PF10186 302 Atg14: UV radiation resistance protein and autopha 90.54
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 90.52
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 89.86
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 89.83
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 89.78
KOG4673 961 consensus Transcription factor TMF, TATA element m 89.7
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 89.5
PF13851201 GAS: Growth-arrest specific micro-tubule binding 89.47
PF13166 712 AAA_13: AAA domain 89.26
PF14662193 CCDC155: Coiled-coil region of CCDC155 89.13
PRK15178434 Vi polysaccharide export inner membrane protein Ve 88.71
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 88.59
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 88.33
KOG2129 552 consensus Uncharacterized conserved protein H4 [Fu 87.93
PF00038312 Filament: Intermediate filament protein; InterPro: 86.86
TIGR01010362 BexC_CtrB_KpsE polysaccharide export inner-membran 86.77
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 86.67
KOG0018 1141 consensus Structural maintenance of chromosome pro 86.35
KOG0933 1174 consensus Structural maintenance of chromosome pro 85.95
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 85.91
PRK10884206 SH3 domain-containing protein; Provisional 85.86
TIGR01010362 BexC_CtrB_KpsE polysaccharide export inner-membran 85.51
PF1280852 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2 85.48
PF10186302 Atg14: UV radiation resistance protein and autopha 85.34
PF15397258 DUF4618: Domain of unknown function (DUF4618) 85.16
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 84.78
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 84.3
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 84.22
KOG4807593 consensus F-actin binding protein, regulates actin 84.18
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 84.08
PF06160 560 EzrA: Septation ring formation regulator, EzrA ; I 83.79
PRK10929 1109 putative mechanosensitive channel protein; Provisi 83.58
PRK10884206 SH3 domain-containing protein; Provisional 83.32
PF15035182 Rootletin: Ciliary rootlet component, centrosome c 82.56
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 82.14
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 82.06
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 81.99
KOG0962 1294 consensus DNA repair protein RAD50, ABC-type ATPas 81.79
PRK10476346 multidrug resistance protein MdtN; Provisional 81.5
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 81.08
KOG0971 1243 consensus Microtubule-associated protein dynactin 80.91
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information 
Probab=99.92  E-value=1.8e-24  Score=224.61  Aligned_cols=223  Identities=16%  Similarity=0.107  Sum_probs=183.0

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHH
Q 008742          291 EKILAEKAAAKAGDAIKERENMVARL-EGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQL  369 (555)
Q Consensus       291 e~~laE~~aAKaaaaIkeRenmVa~L-E~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaR  369 (555)
                      -+++.|+.++|+.+. +-|=..|.+| ++--++|+..         +.+-.||..+...-+++.+++++|..++.+|+.|
T Consensus       170 ~~d~~e~~~~kdSQl-kvrlqe~~~ll~~Rve~le~~---------Sal~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r  239 (554)
T KOG4677|consen  170 YRDYSEDWSPKDSQL-KVRLQEVRRLLKGRVESLERF---------SALRSLQDKLQLAEEAVSMHDENVITAVLIFLKR  239 (554)
T ss_pred             HhhHhhhcccchhhH-HHHHHHHHHHHHhhhHHHHHH---------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            458999999999865 3332233332 3444454444         3556788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhh--------hhhhhhhhH
Q 008742          370 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRL--------AASKGVEFE  441 (555)
Q Consensus       370 LaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql--------~eL~~~r~E  441 (555)
                      +.++|.+.++++|++..|.|+|-+.+++++|+++++++.+  .++.|+||.+|+++..++-+-        .+++++++|
T Consensus       240 ~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~--~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rve  317 (554)
T KOG4677|consen  240 TLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFR--FLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRVE  317 (554)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999988  899999999999986643221        278899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------------
Q 008742          442 REILEAEYTFIADKIIQLEDKAKKL-------------------------------------------------------  466 (555)
Q Consensus       442 rE~~reE~q~l~~kI~qLq~ea~KL-------------------------------------------------------  466 (555)
                      +++.+++++.+++||.+|+.+..-|                                                       
T Consensus       318 ~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~~~~~r~~~  397 (554)
T KOG4677|consen  318 LPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHETEAEGTFSSRVNL  397 (554)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence            9999999999999999988773321                                                       


Q ss_pred             ---------HHHHHHHhhhccCch--hHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccchhHHHHHHH
Q 008742          467 ---------EGNIEMTRKEIEDPT--EVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRMLSL  525 (555)
Q Consensus       467 ---------EeEI~~TKktl~~~T--ssE~ELE~RLhQLTD~LIQKQTqLEALSTEKnSLv~QLERLE~~  525 (555)
                               +.+|-.++..+.+.+  .+..+|++++||||++|||||+|||.++++++.|++|||||+.-
T Consensus       398 ~~qski~dk~~el~kl~~~l~~r~~~~s~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq~~  467 (554)
T KOG4677|consen  398 KKQSKIPDKQYELTKLAARLKLRAWNDSVDALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQEY  467 (554)
T ss_pred             hhhccCcchHHHHHHHHHHHHHHhhhhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence                     223333444455555  45699999999999999999999999999999999999999954

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function Back     alignment and domain information
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases Back     alignment and domain information
>PF14362 DUF4407: Domain of unknown function (DUF4407) Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12) Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF13166 AAA_13: AAA domain Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family Back     alignment and domain information
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PF15397 DUF4618: Domain of unknown function (DUF4618) Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] Back     alignment and domain information
>PRK10476 multidrug resistance protein MdtN; Provisional Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query555
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-10
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 5e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 7e-07
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-05
2zuo_A861 MVP, major vault protein; repeat domains, protein- 3e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 78.4 bits (192), Expect = 3e-15
 Identities = 77/569 (13%), Positives = 164/569 (28%), Gaps = 143/569 (25%)

Query: 55  QLKKRTQEI-NDYRGKLQSDPNVKNVYNRNNSFTSSKETKPKSTLTDSDWTELLGTPDKG 113
           + + + ++I + +      + + K+V           +  PKS L+  +   ++ + D  
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDV-----------QDMPKSILSKEEIDHIIMSKD-- 59

Query: 114 LSLGNVRKDERRRQGGTLGNRNRKI---------NKNSSLIKSGWSKVNGGNKPSDGDES 164
                       R   TL ++  ++           N   + S         +PS     
Sbjct: 60  ------AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ--RQPSMMTRM 111

Query: 165 GSSGRSSSVELQNDGKNINGQDVKPQDGRSKENDDVKKN-SRL---EMVSV-----PGK- 214
               R     L ND +     +V     R +    +++    L   + V +      GK 
Sbjct: 112 YIEQRD---RLYNDNQVFAKYNVS----RLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 215 ---VDAFSDVKIGMNDVDGRLPSNIR----GNHKSNAGIRASVLNDSKRGSSSTSEDGSD 267
              +D     K     V  ++   I      N  S   +   +     +   + +     
Sbjct: 165 WVALDVCLSYK-----VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 268 SNSDSSSSESESEREREERRKLKEK-------ILAEKAAAKAGDAIKERENMVARLEGEK 320
           S++      S        RR LK K       +L           ++             
Sbjct: 220 SSNIKLRIHSIQAE---LRRLLKSKPYENCLLVL---------LNVQ-----------NA 256

Query: 321 QSLE------KIL-EERAKQ---QVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLL 370
           ++        KIL   R KQ    +  A+    S+         +         E   LL
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD---------EVKSLL 307

Query: 371 AK-LETANADLAR----------ALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRN 419
            K L+    DL R          ++ A   +  + T    +     +L  +    L+   
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 420 SNTHQTGIYLKRLAA-SKGVEFEREIL-----EAEYTFIADKIIQLEDKAKKLEGNIEMT 473
              ++      RL+           +L     +   + +   + +L   +  +E   + +
Sbjct: 368 PAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-LVEKQPKES 424

Query: 474 RKEIEDPTEVEIELKRRLGQLTD-H--LIQKQAQVFPLNFLPGRTTIPVMRMLSLAFF-- 528
              I     + +ELK +L      H  ++       P  F       P +     +    
Sbjct: 425 TISIPS---IYLELKVKLENEYALHRSIVDHYN--IPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 529 HMDGIIETSSLSIITLLL----FMERMVI 553
           H+  I     +++  ++     F+E+ + 
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query555
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.31
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 97.28
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.24
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 96.36
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 96.13
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 95.91
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 95.2
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 95.1
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 94.9
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 94.03
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 93.9
1x79_B112 RAB GTPase binding effector protein 1; rabaptin5, 89.74
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 89.41
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 87.55
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 86.9
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 85.31
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 84.99
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 80.87
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
Probab=97.31  E-value=0.00075  Score=75.88  Aligned_cols=38  Identities=16%  Similarity=0.102  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccCCCCccchhHHHHH
Q 008742          486 ELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRML  523 (555)
Q Consensus       486 ELE~RLhQLTD~LIQKQTqLEALSTEKnSLv~QLERLE  523 (555)
                      +|+..+..+...|-+-+.+++.+..+...+.-++.+|+
T Consensus      1085 ~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le 1122 (1184)
T 1i84_S         1085 ELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELE 1122 (1184)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444344433343333
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2 Back     alignment and structure
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Back     alignment and structure
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 555
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 0.002

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00