Citrus Sinensis ID: 008744

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-----
MATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ
cccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHcccccccccccEEEcccEEEEEEcHHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccEEEccccEEEEEccccccEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHHccccccccccccccEEEEccEEEccccccccccccccEEHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccc
cccccccHHHHHHHHHHHHHHHHHHHcccccccccEEccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHccccEEccccEEEEEccHHHHHHHHHHHHHcccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHcccHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHcccEEEccccEEEEEccccccEEEEEccccccccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHccccccccccccEEEEEccEEEEccccccccccccccEEHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHEEEEcccccccccEEEcHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHcccEEcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccc
mateeentgnvKRELEKVFDLALkatvpnetdvrpLIAACTAKfgdyqcnnaMGLWSkikgkgtefkgpqpvgqaimknlppsemiescsvagpgfVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVvdfsspniakemhvgHLRSTIIGDSLARMLEFSNVEVLrrnhvgdwgtQFGMLIEYLFekfpnsedanETAIGELQEFYRRsknrfdsdpafKERAQQAVVRLqsgepkyhEAWAQICEISRKEFDKVYKRLRVDLEekgesfynpyipgvidelskqglveesqgaRVIFIEGVNIPLIIvksdggfnyasTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKragwlsaddstypkashvgfglvlgedgkrlRTRFSEVVRLVDLLDEAKNRSKAVLIergkdkewtEEELEQTAEAVGYGaakyfdlknnrltnytfsfdqmlndkgnTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ
mateeentgnvkrelEKVFDLALkatvpnetdvrPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSspniakemhvghLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVrlqsgepkyhEAWAQICEISRKEFDKVYKRLRVDLeekgesfynpyipGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVgfglvlgedgkrlrTRFSEVVRlvdlldeaknrskavliergkdkewteeELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ
MATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKewteeeleqtaeaVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ
***************EKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGT********************MIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFP*********************************************PKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIER*****W****LEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC***
*********NVKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKML**************KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRS*****************LEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ
***********KRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ
*****ENTGNVKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query555 2.2.26 [Sep-21-2011]
Q8KPU9584 Arginine--tRNA ligase OS= yes no 0.949 0.902 0.486 1e-148
P37880661 Arginine--tRNA ligase, cy yes no 0.971 0.815 0.484 1e-147
Q5N643584 Arginine--tRNA ligase OS= yes no 0.949 0.902 0.484 1e-147
Q6P1S4660 Arginine--tRNA ligase, cy yes no 0.965 0.812 0.478 1e-147
A7YW98660 Arginine--tRNA ligase, cy yes no 0.963 0.810 0.486 1e-147
B0JLI8585 Arginine--tRNA ligase OS= yes no 0.924 0.876 0.493 1e-146
Q9D0I9660 Arginine--tRNA ligase, cy yes no 0.971 0.816 0.473 1e-145
P40329660 Arginine--tRNA ligase, cy yes no 0.971 0.816 0.471 1e-144
Q5RA20660 Arginine--tRNA ligase, cy yes no 0.971 0.816 0.473 1e-144
P54136660 Arginine--tRNA ligase, cy yes no 0.971 0.816 0.477 1e-144
>sp|Q8KPU9|SYR_SYNE7 Arginine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942) GN=argS PE=3 SV=2 Back     alignment and function desciption
 Score =  524 bits (1349), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 270/555 (48%), Positives = 365/555 (65%), Gaps = 28/555 (5%)

Query: 14  ELEKVFDLALKATV-PNETDVRPLIAACT-AKFGDYQCNNAMGLWSKIKGKGTEFKGPQP 71
           +L   F  AL A+  P      PL+   T  KFGDYQ N AM L  ++       + P+ 
Sbjct: 7   QLRDRFQAALAASFGPEWAATDPLLVPATNPKFGDYQSNVAMSLAKQLG------QPPRA 60

Query: 72  VGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVD---GIETWAPKLRVK 128
           + + +++NL  +++ E  ++AGPGF+N  L  +++   +Q++  D   GI+  +P  RV 
Sbjct: 61  IAETLVQNLNLADLCEPPAIAGPGFINFTLQPSYLVAQLQQLQTDERLGIQPVSPPQRV- 119

Query: 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYL 188
             +VDFSSPNIAKEMHVGHLRSTIIGDS+AR+LEF   EVLR NHVGDWGTQFGMLI +L
Sbjct: 120 --IVDFSSPNIAKEMHVGHLRSTIIGDSIARVLEFQGHEVLRLNHVGDWGTQFGMLIAFL 177

Query: 189 FEKFPNS-EDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQ 247
            E++P +    +   I +L  FY+++K RFD DP+F+E A+Q VV LQSGE    +AW  
Sbjct: 178 QEQYPQALSQPDALDISDLVAFYKQAKARFDEDPSFQETARQRVVDLQSGEATARQAWQL 237

Query: 248 ICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVN 307
           +C+ SR+EF K+Y RL + LEE+GESFYNPY+P ++++L + GL+ E QGA+ +F+EG  
Sbjct: 238 LCDQSRREFQKIYDRLDIQLEERGESFYNPYLPAIVEDLRRLGLLVEDQGAQCVFLEGFQ 297

Query: 308 ------IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAK 361
                 +PLI+ KSDGG+NYA+TDLAAL YRL +++A+ IIYVTD GQ  HF  VF  A+
Sbjct: 298 NKEGQPLPLIVQKSDGGYNYATTDLAALRYRLGQDQAQRIIYVTDSGQANHFAQVFQVAQ 357

Query: 362 RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIER- 420
           RAGWL A      +  HV FGLV GEDGK+L+TR  + VRL DLLDEA +R++  L  R 
Sbjct: 358 RAGWLPA----AAQIEHVPFGLVQGEDGKKLKTRAGDTVRLRDLLDEAVDRARTDLTTRI 413

Query: 421 -GKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHA 479
             +++  T E +E  A+AVG GA KY DL  NR +NY FSFD+ML  +GNTA YLLYA+ 
Sbjct: 414 AAEERSETPEFIEAVAQAVGLGAVKYADLSQNRNSNYIFSFDKMLALQGNTAPYLLYAYV 473

Query: 480 RICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLY 539
           RI  I RK G D  +L    + VL    ER+L   +L   EV++E   +LLPN +C YL+
Sbjct: 474 RIQGIARKGGIDFAQLDPVAA-VLTEPTERSLAKQVLQLGEVLDEVARDLLPNRLCSYLF 532

Query: 540 NLSEYFTRFYSNCQV 554
            LS+ F +FY  C +
Sbjct: 533 ELSQTFNQFYDRCPI 547

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9
>sp|P37880|SYRC_CRIGR Arginine--tRNA ligase, cytoplasmic OS=Cricetulus griseus GN=RARS PE=2 SV=1 Back     alignment and function description
>sp|Q5N643|SYR_SYNP6 Arginine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=argS PE=3 SV=1 Back     alignment and function description
>sp|Q6P1S4|SYRC_XENTR Arginine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=rars PE=2 SV=1 Back     alignment and function description
>sp|A7YW98|SYRC_BOVIN Arginine--tRNA ligase, cytoplasmic OS=Bos taurus GN=RARS PE=2 SV=1 Back     alignment and function description
>sp|B0JLI8|SYR_MICAN Arginine--tRNA ligase OS=Microcystis aeruginosa (strain NIES-843) GN=argS PE=3 SV=1 Back     alignment and function description
>sp|Q9D0I9|SYRC_MOUSE Arginine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Rars PE=2 SV=2 Back     alignment and function description
>sp|P40329|SYRC_RAT Arginine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Rars PE=1 SV=2 Back     alignment and function description
>sp|Q5RA20|SYRC_PONAB Arginine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=RARS PE=2 SV=1 Back     alignment and function description
>sp|P54136|SYRC_HUMAN Arginine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=RARS PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query555
224064484590 predicted protein [Populus trichocarpa] 0.998 0.938 0.839 0.0
255546293592 arginyl-tRNA synthetase, putative [Ricin 0.996 0.934 0.828 0.0
449435790590 PREDICTED: arginine--tRNA ligase, cytopl 0.998 0.938 0.819 0.0
225445067649 PREDICTED: arginyl-tRNA synthetase-like 0.998 0.853 0.807 0.0
15236164642 Arginyl-tRNA synthetase, class Ic [Arabi 0.998 0.862 0.787 0.0
2632106590 arginyl-tRNA synthetase [Arabidopsis tha 0.998 0.938 0.787 0.0
297799374590 arginyl-tRNA synthetase [Arabidopsis lyr 0.998 0.938 0.785 0.0
297738741 691 unnamed protein product [Vitis vinifera] 0.998 0.801 0.746 0.0
255580290615 arginyl-tRNA synthetase, putative [Ricin 0.992 0.895 0.773 0.0
2632103589 arginyl-tRNA synthetase [Arabidopsis tha 0.994 0.937 0.772 0.0
>gi|224064484|ref|XP_002301499.1| predicted protein [Populus trichocarpa] gi|222843225|gb|EEE80772.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  982 bits (2538), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/555 (83%), Positives = 502/555 (90%), Gaps = 1/555 (0%)

Query: 1   MATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIK 60
           MA E+EN GN+K++L K+F L+L+ATVP E D+ PL+AACTAKFGDYQCNNAMGLWSKIK
Sbjct: 1   MAAEQENAGNLKQKLAKLFQLSLEATVPGEPDIEPLVAACTAKFGDYQCNNAMGLWSKIK 60

Query: 61  GK-GTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIE 119
           G+ G EF+GP  VGQAIMKNLP SEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIE
Sbjct: 61  GRPGIEFRGPPAVGQAIMKNLPQSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIE 120

Query: 120 TWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGT 179
           TWAPKL +K+AVVDFSSPNIAKEMHVGHLRSTIIGD+LA MLEFSNVEVLRRNHVGDWGT
Sbjct: 121 TWAPKLSIKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLASMLEFSNVEVLRRNHVGDWGT 180

Query: 180 QFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEP 239
           QFGMLIE+LFEKFPN ED NETAIG+LQ FY+ SK RFD D  FK+RAQ+AVVRLQSGE 
Sbjct: 181 QFGMLIEFLFEKFPNFEDVNETAIGDLQAFYKESKQRFDVDAEFKDRAQKAVVRLQSGEQ 240

Query: 240 KYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGAR 299
            Y +AWAQICEISR+EFD+VY+RL V LEEKGESFYNPYIPGVI+ L+ QGLVEES+GAR
Sbjct: 241 MYRKAWAQICEISRREFDQVYQRLGVHLEEKGESFYNPYIPGVIEALTNQGLVEESKGAR 300

Query: 300 VIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSA 359
           VIFIEG+NIPLI+VKSDGG+NYASTD+ ALWYRL EEKAEWIIYVTDVGQQ HFDM F A
Sbjct: 301 VIFIEGINIPLIVVKSDGGYNYASTDMTALWYRLTEEKAEWIIYVTDVGQQQHFDMFFKA 360

Query: 360 AKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 419
           AKRAGWL ADD  YPKASHVGFGLVLGEDGKR RTR +EVVRL DLLDEAK RSKA LIE
Sbjct: 361 AKRAGWLPADDRQYPKASHVGFGLVLGEDGKRFRTRSTEVVRLADLLDEAKTRSKAALIE 420

Query: 420 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHA 479
           RGK  EWTEEELEQTAEAVGYGA KY DLKNNRLTNYTF FDQMLNDKGNTAVYLLYAHA
Sbjct: 421 RGKAAEWTEEELEQTAEAVGYGAVKYADLKNNRLTNYTFDFDQMLNDKGNTAVYLLYAHA 480

Query: 480 RICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLY 539
           RICSIIRKSGKD  ELKKTG +VLDHADERALGLHLL F+EV+EEA TNLLPNV+CEYLY
Sbjct: 481 RICSIIRKSGKDTGELKKTGKIVLDHADERALGLHLLQFAEVVEEACTNLLPNVLCEYLY 540

Query: 540 NLSEYFTRFYSNCQV 554
           NLSE +TRFYSNCQV
Sbjct: 541 NLSENYTRFYSNCQV 555

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255546293|ref|XP_002514206.1| arginyl-tRNA synthetase, putative [Ricinus communis] gi|223546662|gb|EEF48160.1| arginyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449435790|ref|XP_004135677.1| PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Cucumis sativus] gi|449489808|ref|XP_004158422.1| PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225445067|ref|XP_002280299.1| PREDICTED: arginyl-tRNA synthetase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|15236164|ref|NP_194360.1| Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana] gi|2632105|emb|CAB11468.1| arginyl-tRNA synthetase [Arabidopsis thaliana] gi|4539426|emb|CAB38959.1| arginyl-tRNA synthetase [Arabidopsis thaliana] gi|7269482|emb|CAB79485.1| arginyl-tRNA synthetase [Arabidopsis thaliana] gi|332659782|gb|AEE85182.1| Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|2632106|emb|CAB11469.1| arginyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297799374|ref|XP_002867571.1| arginyl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata] gi|297313407|gb|EFH43830.1| arginyl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297738741|emb|CBI27986.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255580290|ref|XP_002530974.1| arginyl-tRNA synthetase, putative [Ricinus communis] gi|223529450|gb|EEF31409.1| arginyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|2632103|emb|CAB11467.1| arginyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query555
TAIR|locus:2136794642 emb1027 "embryo defective 1027 0.998 0.862 0.767 2.1e-235
TAIR|locus:2028982590 AT1G66530 [Arabidopsis thalian 0.994 0.935 0.756 1.4e-229
ZFIN|ZDB-GENE-030131-9014661 rars "arginyl-tRNA synthetase" 0.967 0.812 0.469 7.9e-133
UNIPROTKB|A7YW98660 RARS "Arginine--tRNA ligase, c 0.963 0.810 0.479 1e-132
UNIPROTKB|E2QRR5660 RARS "Uncharacterized protein" 0.971 0.816 0.477 1.3e-132
UNIPROTKB|J9P440643 RARS "Uncharacterized protein" 0.971 0.838 0.477 1.3e-132
UNIPROTKB|P54136660 RARS "Arginine--tRNA ligase, c 0.971 0.816 0.470 3.5e-130
RGD|1309215660 Rars "arginyl-tRNA synthetase" 0.971 0.816 0.462 9.3e-130
MGI|MGI:1914297660 Rars "arginyl-tRNA synthetase" 0.971 0.816 0.464 1.5e-129
UNIPROTKB|Q5ZM11661 RARS "Arginine--tRNA ligase, c 0.965 0.810 0.459 1.7e-128
TAIR|locus:2136794 emb1027 "embryo defective 1027" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2270 (804.1 bits), Expect = 2.1e-235, P = 2.1e-235
 Identities = 426/555 (76%), Positives = 485/555 (87%)

Query:     1 MATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAACT-AKFGDYQCNNAMGLWSKI 59
             MA  EE TGN+KR+L K+FD++LK TVP+E  V PL+AA    KFGDYQCNNAMGLWS I
Sbjct:    53 MAANEEFTGNLKRQLAKLFDVSLKLTVPDEPSVEPLVAASALGKFGDYQCNNAMGLWSII 112

Query:    60 KGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIE 119
             KGKGT+FKGP  VGQA++K+LP SEM+ESCSVAGPGF+NVVLS  WMAK+I+ ML+DG++
Sbjct:   113 KGKGTQFKGPPAVGQALVKSLPTSEMVESCSVAGPGFINVVLSAKWMAKSIENMLIDGVD 172

Query:   120 TWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGT 179
             TWAP L VK+AVVDFSSPNIAKEMHVGHLRSTIIGD+LARMLE+S+VEVLRRNHVGDWGT
Sbjct:   173 TWAPTLSVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEYSHVEVLRRNHVGDWGT 232

Query:   180 QFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEP 239
             QFGMLIEYLFEKFP+++   ETAIG+LQ FY+ SK++FD D AFKE+AQQAVVRLQ G+P
Sbjct:   233 QFGMLIEYLFEKFPDTDSVTETAIGDLQVFYKASKHKFDLDEAFKEKAQQAVVRLQGGDP 292

Query:   240 KYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGAR 299
              Y +AWA+IC+ISR EF KVY+RLRV+LEEKGESFYNP+I  VI+EL+ +GLVEES+GAR
Sbjct:   293 VYRKAWAKICDISRTEFAKVYQRLRVELEEKGESFYNPHIAKVIEELNSKGLVEESEGAR 352

Query:   300 VIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSA 359
             VIF+EG +IPL++VKSDGGFNYASTDL ALWYRLNEEKAEWIIYVTDVGQQ HF+M F A
Sbjct:   353 VIFLEGFDIPLMVVKSDGGFNYASTDLTALWYRLNEEKAEWIIYVTDVGQQQHFNMFFKA 412

Query:   360 AKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 419
             A++AGWL  +D TYP+ +HVGFGLVLGEDGKR RTR ++VVRLVDLLDEAK RSK  LIE
Sbjct:   413 ARKAGWLPDNDKTYPRVNHVGFGLVLGEDGKRFRTRATDVVRLVDLLDEAKTRSKLALIE 472

Query:   420 RGKDKXXXXXXXXXXXXXVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHA 479
             RGKDK             VGYGA KY DLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHA
Sbjct:   473 RGKDKEWTPEELDQTAEAVGYGAVKYADLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHA 532

Query:   480 RICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLY 539
             RICSIIRKSGKDI+ELKKTG L LDHADERALGLHLL F+E +EEA TNLLP+V+CEYLY
Sbjct:   533 RICSIIRKSGKDIDELKKTGKLALDHADERALGLHLLRFAETVEEACTNLLPSVLCEYLY 592

Query:   540 NLSEYFTRFYSNCQV 554
             NLSE+FTRFYSNCQV
Sbjct:   593 NLSEHFTRFYSNCQV 607
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004814 "arginine-tRNA ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006420 "arginyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS
GO:0005739 "mitochondrion" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0048366 "leaf development" evidence=RCA
GO:0048825 "cotyledon development" evidence=RCA
TAIR|locus:2028982 AT1G66530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9014 rars "arginyl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A7YW98 RARS "Arginine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QRR5 RARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P440 RARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P54136 RARS "Arginine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1309215 Rars "arginyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1914297 Rars "arginyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZM11 RARS "Arginine--tRNA ligase, cytoplasmic" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B0JLI8SYR_MICAN6, ., 1, ., 1, ., 1, 90.49350.92430.8769yesno
A5GW85SYR_SYNR36, ., 1, ., 1, ., 1, 90.45590.94770.8915yesno
Q7U3V8SYR_SYNPX6, ., 1, ., 1, ., 1, 90.47410.90090.8375yesno
P40329SYRC_RAT6, ., 1, ., 1, ., 1, 90.47190.97110.8166yesno
P37880SYRC_CRIGR6, ., 1, ., 1, ., 1, 90.48460.97110.8154yesno
Q9Z7Y3SYR_CHLPN6, ., 1, ., 1, ., 1, 90.42770.91350.9037yesno
Q46HI6SYR_PROMT6, ., 1, ., 1, ., 1, 90.44640.90270.8253yesno
O84460SYR_CHLTR6, ., 1, ., 1, ., 1, 90.42080.87560.8632yesno
Q253D1SYR_CHLFF6, ., 1, ., 1, ., 1, 90.43920.92610.9145yesno
Q8E9Y7SYR_SHEON6, ., 1, ., 1, ., 1, 90.43890.88100.8416yesno
Q8DKN4SYR_THEEB6, ., 1, ., 1, ., 1, 90.47880.94230.8955yesno
A1S2P7SYR_SHEAM6, ., 1, ., 1, ., 1, 90.41860.94410.9018yesno
B1X0N5SYR_CYAA56, ., 1, ., 1, ., 1, 90.47940.95850.9094yesno
Q5RA20SYRC_PONAB6, ., 1, ., 1, ., 1, 90.47370.97110.8166yesno
Q9D0I9SYRC_MOUSE6, ., 1, ., 1, ., 1, 90.47370.97110.8166yesno
P54136SYRC_HUMAN6, ., 1, ., 1, ., 1, 90.47730.97110.8166yesno
Q3M769SYR_ANAVT6, ., 1, ., 1, ., 1, 90.49330.91530.8639yesno
B7KCT7SYR_CYAP76, ., 1, ., 1, ., 1, 90.46480.95130.9025yesno
Q7V493SYR_PROMM6, ., 1, ., 1, ., 1, 90.44670.95130.8627yesno
Q3AGU9SYR_SYNSC6, ., 1, ., 1, ., 1, 90.46220.89900.8457yesno
Q5L6U4SYR_CHLAB6, ., 1, ., 1, ., 1, 90.42370.92070.9092yesno
Q31CZ4SYR_PROM96, ., 1, ., 1, ., 1, 90.45480.90450.8311yesno
Q3AVY5SYR_SYNS96, ., 1, ., 1, ., 1, 90.45560.95850.9016yesno
Q5N643SYR_SYNP66, ., 1, ., 1, ., 1, 90.48460.94950.9023yesno
Q8YQU9SYR_NOSS16, ., 1, ., 1, ., 1, 90.48760.91530.8639yesno
Q7VE03SYR_PROMA6, ., 1, ., 1, ., 1, 90.45780.95310.8772yesno
B2J6I0SYR_NOSP76, ., 1, ., 1, ., 1, 90.48500.90450.8595yesno
Q3KLP4SYR_CHLTA6, ., 1, ., 1, ., 1, 90.42080.87560.8632yesno
Q9PJT8SYR_CHLMU6, ., 1, ., 1, ., 1, 90.42260.89180.8792yesno
C1DHR7SYR_AZOVD6, ., 1, ., 1, ., 1, 90.42580.88640.8497yesno
Q10XL4SYR_TRIEI6, ., 1, ., 1, ., 1, 90.48000.95670.9076yesno
Q6MEP4SYR_PARUW6, ., 1, ., 1, ., 1, 90.44700.94950.9023yesno
Q9VXN4SYRC_DROME6, ., 1, ., 1, ., 1, 90.46070.97830.8165yesno
Q7V396SYR_PROMP6, ., 1, ., 1, ., 1, 90.43580.89540.8242yesno
Q5ZM11SYRC_CHICK6, ., 1, ., 1, ., 1, 90.45980.96750.8124yesno
Q0I6R7SYR_SYNS36, ., 1, ., 1, ., 1, 90.46550.90990.8559yesno
Q8KPU9SYR_SYNE76, ., 1, ., 1, ., 1, 90.48640.94950.9023yesno
A2C016SYR_PROM16, ., 1, ., 1, ., 1, 90.44460.90270.8253yesno
A9BDF0SYR_PROM46, ., 1, ., 1, ., 1, 90.45380.91170.8391yesno
B7JVP5SYR_CYAP86, ., 1, ., 1, ., 1, 90.45250.95850.9094yesno
A2CDB7SYR_PROM36, ., 1, ., 1, ., 1, 90.44670.95130.8756yesno
A7YW98SYRC_BOVIN6, ., 1, ., 1, ., 1, 90.48630.96390.8106yesno
B8HSK8SYR_CYAP46, ., 1, ., 1, ., 1, 90.48770.91170.8649yesno
Q6P1S4SYRC_XENTR6, ., 1, ., 1, ., 1, 90.47810.96570.8121yesno
B1XPX8SYR_SYNP26, ., 1, ., 1, ., 1, 90.47780.94050.8923yesno
Q2SMY0SYR_HAHCH6, ., 1, ., 1, ., 1, 90.41330.95670.9186yesno
A5GP97SYR_SYNPW6, ., 1, ., 1, ., 1, 90.47230.90090.8375yesno
Q824H4SYR_CHLCV6, ., 1, ., 1, ., 1, 90.42560.92070.9060yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.190.914
3rd Layer6.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query555
PLN02286576 PLN02286, PLN02286, arginine-tRNA ligase 0.0
COG0018577 COG0018, ArgS, Arginyl-tRNA synthetase [Translatio 1e-154
PRK01611507 PRK01611, argS, arginyl-tRNA synthetase; Reviewed 1e-146
TIGR00456566 TIGR00456, argS, arginyl-tRNA synthetase 1e-129
pfam00750345 pfam00750, tRNA-synt_1d, tRNA synthetases class I 1e-106
PRK12451562 PRK12451, PRK12451, arginyl-tRNA synthetase; Revie 6e-98
cd00671212 cd00671, ArgRS_core, catalytic core domain of argi 5e-68
cd07956156 cd07956, Anticodon_Ia_Arg, Anticodon-binding domai 3e-35
pfam05746117 pfam05746, DALR_1, DALR anticodon binding domain 2e-22
smart00836122 smart00836, DALR_1, DALR anticodon binding domain 2e-21
pfam0348584 pfam03485, Arg_tRNA_synt_N, Arginyl tRNA synthetas 9e-16
smart0101685 smart01016, Arg_tRNA_synt_N, Arginyl tRNA syntheta 7e-13
cd00802143 cd00802, class_I_aaRS_core, catalytic core domain 2e-07
>gnl|CDD|215160 PLN02286, PLN02286, arginine-tRNA ligase Back     alignment and domain information 
 Score = 1087 bits (2813), Expect = 0.0
 Identities = 435/543 (80%), Positives = 480/543 (88%), Gaps = 3/543 (0%)

Query: 13  RELEKVFDLALKATVPNETDVRPLIAACT-AKFGDYQCNNAMGLWSKIKGKGTEFKGPQP 71
           REL K+F+ +L+ TVP+E  V PL+AACT  KFGDYQCNNAMGLWSK+KGKGT FK P+ 
Sbjct: 1   RELAKLFEASLRLTVPDEPSVEPLVAACTNPKFGDYQCNNAMGLWSKLKGKGTSFKNPRA 60

Query: 72  VGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAV 131
           V QAI+KNLP SEMIES SVAGPGFVNV LS +W+AK I++MLVDGI+TWAP L VK+AV
Sbjct: 61  VAQAIVKNLPASEMIESTSVAGPGFVNVRLSASWLAKRIERMLVDGIDTWAPTLPVKRAV 120

Query: 132 VDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEK 191
           VDFSSPNIAKEMHVGHLRSTIIGD+LARMLEFS VEVLRRNHVGDWGTQFGMLIE+LFEK
Sbjct: 121 VDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEK 180

Query: 192 FPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEI 251
           FPN E  ++ AIG+LQEFY+ +K RFD D  FK RAQQAVVRLQ G+P+Y  AWA+ICEI
Sbjct: 181 FPNWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEI 240

Query: 252 SRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLI 311
           SR+EF+KVY+RLRV+LEEKGESFYNPYIPGVI+EL  +GLV ES GARVIF+EG +IPLI
Sbjct: 241 SRREFEKVYQRLRVELEEKGESFYNPYIPGVIEELESKGLVVESDGARVIFVEGFDIPLI 300

Query: 312 IVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDS 371
           +VKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQ HFDMVF AAKRAGWL   + 
Sbjct: 301 VVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGWL--PED 358

Query: 372 TYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEEL 431
           TYP+  HVGFGLVLGEDGKR RTR  EVVRLVDLLDEAK+RSKA LIERGKD EWT EEL
Sbjct: 359 TYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEEL 418

Query: 432 EQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKD 491
           EQ AEAVGYGA KY DLKNNRLTNYTFSFDQML+ KGNTAVYLLYAHARICSIIRKSGKD
Sbjct: 419 EQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKD 478

Query: 492 IEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSN 551
           I+ELKKTG +VLDH DERALGLHLL F EV+EEA T+LLPN +CEYLYNLSE FT+FYSN
Sbjct: 479 IDELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSN 538

Query: 552 CQV 554
           C+V
Sbjct: 539 CKV 541

Length = 576
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232981 TIGR00456, argS, arginyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|216097 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R) Back     alignment and domain information
>gnl|CDD|183534 PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|153410 cd07956, Anticodon_Ia_Arg, Anticodon-binding domain of arginyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|218729 pfam05746, DALR_1, DALR anticodon binding domain Back     alignment and domain information
>gnl|CDD|214846 smart00836, DALR_1, DALR anticodon binding domain Back     alignment and domain information
>gnl|CDD|217589 pfam03485, Arg_tRNA_synt_N, Arginyl tRNA synthetase N terminal domain Back     alignment and domain information
>gnl|CDD|214975 smart01016, Arg_tRNA_synt_N, Arginyl tRNA synthetase N terminal dom Back     alignment and domain information
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 555
PLN02286576 arginine-tRNA ligase 100.0
COG0018577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 100.0
PRK12451562 arginyl-tRNA synthetase; Reviewed 100.0
KOG4426656 consensus Arginyl-tRNA synthetase [Translation, ri 100.0
TIGR00456566 argS arginyl-tRNA synthetase. This model recognize 100.0
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 100.0
KOG1195567 consensus Arginyl-tRNA synthetase [Translation, ri 100.0
PF00750354 tRNA-synt_1d: tRNA synthetases class I (R); InterP 100.0
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 100.0
PTZ00399 651 cysteinyl-tRNA-synthetase; Provisional 99.97
PRK11893511 methionyl-tRNA synthetase; Reviewed 99.97
TIGR00398530 metG methionyl-tRNA synthetase. The methionyl-tRNA 99.97
PRK00260463 cysS cysteinyl-tRNA synthetase; Validated 99.97
PLN02946 557 cysteine-tRNA ligase 99.97
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 99.96
COG0143558 MetG Methionyl-tRNA synthetase [Translation, ribos 99.96
TIGR00435465 cysS cysteinyl-tRNA synthetase. This model finds t 99.96
PRK12267 648 methionyl-tRNA synthetase; Reviewed 99.96
PLN02224 616 methionine-tRNA ligase 99.95
PRK12268556 methionyl-tRNA synthetase; Reviewed 99.95
PRK14536490 cysS cysteinyl-tRNA synthetase; Provisional 99.95
PRK14534481 cysS cysteinyl-tRNA synthetase; Provisional 99.94
COG0215464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 99.94
PRK12418384 cysteinyl-tRNA synthetase; Provisional 99.94
PLN02610 801 probable methionyl-tRNA synthetase 99.94
PRK14535699 cysS cysteinyl-tRNA synthetase; Provisional 99.94
TIGR03447411 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- 99.93
PF01406300 tRNA-synt_1e: tRNA synthetases class I (C) catalyt 99.92
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 99.92
cd00674353 LysRS_core_class_I catalytic core domain of class 99.91
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 99.91
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 99.91
PRK05729 874 valS valyl-tRNA synthetase; Reviewed 99.89
TIGR00464470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 99.89
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 99.89
PRK13208 800 valS valyl-tRNA synthetase; Reviewed 99.88
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 99.88
PRK01406476 gltX glutamyl-tRNA synthetase; Reviewed 99.88
TIGR00422 861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 99.88
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 99.88
cd00802143 class_I_aaRS_core catalytic core domain of class I 99.87
cd07956156 Anticodon_Ia_Arg Anticodon-binding domain of argin 99.86
PRK00750510 lysK lysyl-tRNA synthetase; Reviewed 99.86
COG0525 877 ValS Valyl-tRNA synthetase [Translation, ribosomal 99.85
KOG0436578 consensus Methionyl-tRNA synthetase [Translation, 99.85
PF09334391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 99.85
TIGR00392 861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 99.84
PRK14895 513 gltX glutamyl-tRNA synthetase; Provisional 99.84
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 99.83
PRK12558445 glutamyl-tRNA synthetase; Provisional 99.83
PRK06039 975 ileS isoleucyl-tRNA synthetase; Reviewed 99.83
KOG2007 586 consensus Cysteinyl-tRNA synthetase [Translation, 99.8
PLN02943 958 aminoacyl-tRNA ligase 99.79
PRK05743 912 ileS isoleucyl-tRNA synthetase; Reviewed 99.79
TIGR00467 515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 99.78
PTZ00419 995 valyl-tRNA synthetase-like protein; Provisional 99.78
PRK12410433 glutamylglutaminyl-tRNA synthetase; Provisional 99.76
PRK13804 961 ileS isoleucyl-tRNA synthetase; Provisional 99.76
PLN02843 974 isoleucyl-tRNA synthetase 99.74
PLN02627535 glutamyl-tRNA synthetase 99.74
PLN02381 1066 valyl-tRNA synthetase 99.74
TIGR00395 938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 99.73
PLN02882 1159 aminoacyl-tRNA ligase 99.72
cd00808239 GluRS_core catalytic core domain of discriminating 99.72
PF0348585 Arg_tRNA_synt_N: Arginyl tRNA synthetase N termina 99.71
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 99.71
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 99.69
PF00749314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 99.68
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 99.68
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 99.68
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 99.67
COG0008472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 99.65
PRK04156567 gltX glutamyl-tRNA synthetase; Provisional 99.64
cd09287240 GluRS_non_core catalytic core domain of non-discri 99.64
COG1384 521 LysS Lysyl-tRNA synthetase (class I) [Translation, 99.63
PLN02563 963 aminoacyl-tRNA ligase 99.63
PF00133 601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 99.63
COG0495 814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 99.62
TIGR03838272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 99.58
PF05746119 DALR_1: DALR anticodon binding domain; InterPro: I 99.56
PRK05710299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 99.55
KOG0432 995 consensus Valyl-tRNA synthetase [Translation, ribo 99.53
KOG1149524 consensus Glutamyl-tRNA synthetase (mitochondrial) 99.45
PLN03233 523 putative glutamate-tRNA ligase; Provisional 99.45
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 99.45
PTZ00402 601 glutamyl-tRNA synthetase; Provisional 99.43
PRK05347 554 glutaminyl-tRNA synthetase; Provisional 99.38
PLN02907 722 glutamate-tRNA ligase 99.37
TIGR00463560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 99.37
smart00836122 DALR_1 DALR anticodon binding domain. This all alp 99.36
COG0060 933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 99.27
TIGR00440 522 glnS glutaminyl-tRNA synthetase. This protein is a 99.25
PRK12300 897 leuS leucyl-tRNA synthetase; Reviewed 99.24
PRK14703 771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 99.16
PLN02859 788 glutamine-tRNA ligase 99.15
KOG1247567 consensus Methionyl-tRNA synthetase [Translation, 99.04
PTZ00437574 glutaminyl-tRNA synthetase; Provisional 99.03
PLN02959 1084 aminoacyl-tRNA ligase 98.77
PLN02959 1084 aminoacyl-tRNA ligase 98.58
KOG0435 876 consensus Leucyl-tRNA synthetase [Translation, rib 98.5
PRK12300 897 leuS leucyl-tRNA synthetase; Reviewed 98.29
KOG0433 937 consensus Isoleucyl-tRNA synthetase [Translation, 98.26
COG0060 933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 97.6
PRK13354410 tyrosyl-tRNA synthetase; Provisional 97.41
PRK05912408 tyrosyl-tRNA synthetase; Validated 97.37
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 97.26
KOG0434 1070 consensus Isoleucyl-tRNA synthetase [Translation, 97.24
PRK08560329 tyrosyl-tRNA synthetase; Validated 97.23
TIGR00233328 trpS tryptophanyl-tRNA synthetase. This model repr 97.22
PTZ00126383 tyrosyl-tRNA synthetase; Provisional 97.18
KOG1147 712 consensus Glutamyl-tRNA synthetase [Translation, r 97.06
PLN02486383 aminoacyl-tRNA ligase 96.83
COG0162401 TyrS Tyrosyl-tRNA synthetase [Translation, ribosom 96.33
TIGR00234377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 96.11
KOG0433 937 consensus Isoleucyl-tRNA synthetase [Translation, 96.1
KOG0434 1070 consensus Isoleucyl-tRNA synthetase [Translation, 95.75
KOG0435 876 consensus Leucyl-tRNA synthetase [Translation, rib 95.67
cd07375117 Anticodon_Ia_like Anticodon-binding domain of clas 95.21
PTZ00348 682 tyrosyl-tRNA synthetase; Provisional 95.16
KOG0437 1080 consensus Leucyl-tRNA synthetase [Translation, rib 95.0
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 94.66
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 94.59
COG0180314 TrpS Tryptophanyl-tRNA synthetase [Translation, ri 94.02
KOG0437 1080 consensus Leucyl-tRNA synthetase [Translation, rib 93.65
PRK12556332 tryptophanyl-tRNA synthetase; Provisional 93.32
PRK12284431 tryptophanyl-tRNA synthetase; Reviewed 93.23
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 93.19
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 92.49
cd07957129 Anticodon_Ia_Met Anticodon-binding domain of methi 92.02
PRK00927333 tryptophanyl-tRNA synthetase; Reviewed 90.77
cd07958117 Anticodon_Ia_Leu_BEm Anticodon-binding domain of b 89.87
PRK12282333 tryptophanyl-tRNA synthetase II; Reviewed 88.56
cd07959117 Anticodon_Ia_Leu_AEc Anticodon-binding domain of a 87.0
PRK01233682 glyS glycyl-tRNA synthetase subunit beta; Validate 86.69
PRK12283398 tryptophanyl-tRNA synthetase; Reviewed 86.58
TIGR00211691 glyS glycyl-tRNA synthetase, tetrameric type, beta 83.72
>PLN02286 arginine-tRNA ligase Back     alignment and domain information 
Probab=100.00  E-value=4.7e-123  Score=1021.53  Aligned_cols=519  Identities=81%  Similarity=1.296  Sum_probs=473.0

Q ss_pred             ccccc-cCCCCcccccchHHHHHHHhhcCCCCCCCchHHHHHHHhhCCCCCCceeeEEecCCeEEEEeCHHHHHHHHHHH
Q 008744           35 PLIAA-CTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKM  113 (555)
Q Consensus        35 ~~~~~-~~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~v~v~gpGfiN~~l~~~~~~~~~~~~  113 (555)
                      +.+++ |+++|||||||+||.|||.++++|++.++|++||++|++.|...++|++|+++|||||||+|++.++.+.+..+
T Consensus        23 ~~i~~~~~~~~GD~a~n~a~~lak~~~~~~~~~k~P~~iA~~i~~~l~~~~~i~~v~vagpGfiNf~l~~~~l~~~l~~~  102 (576)
T PLN02286         23 PLVAACTNPKFGDYQCNNAMGLWSKLKGKGTSFKNPRAVAQAIVKNLPASEMIESTSVAGPGFVNVRLSASWLAKRIERM  102 (576)
T ss_pred             eEEecCCCCCCCCcccchHHHHHHHhCccccccCCHHHHHHHHHHhCccccceeeEEEcCCCeEEEEECHHHHHHHHHHH
Confidence            44554 47899999999999999999988888899999999999999877789999999999999999999999999988


Q ss_pred             HHcCCCCCCCcCCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCC
Q 008744          114 LVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFP  193 (555)
Q Consensus       114 ~~~~~~~~~~~~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~  193 (555)
                      +..+..++.+..++++|+||||||||||||||||+|||||||+|||||+++||+|+|+|||||||+||++++.++...+|
T Consensus       103 ~~~~~~~g~~~~~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~  182 (576)
T PLN02286        103 LVDGIDTWAPTLPVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFP  182 (576)
T ss_pred             HHcCcccCCCCCCCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcC
Confidence            87664433333456899999999999999999999999999999999999999999999999999999999988766677


Q ss_pred             CCCCCCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeeccc
Q 008744          194 NSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES  273 (555)
Q Consensus       194 ~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~es  273 (555)
                      +...+.+.++.++..+|+++++.++.+|++++++++.+.+||+||+++.++|++++++++.+|+++|++|||+||..+||
T Consensus       183 ~~~~~~~~~i~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~ges  262 (576)
T PLN02286        183 NWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEKGES  262 (576)
T ss_pred             cccccCcccHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCch
Confidence            65445667899998999999999999999999999999999999999999999999999999999999999999877899


Q ss_pred             ccCCcHHHHHHHHHhCCCeeeecceEEEEecCCCCCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccH
Q 008744          274 FYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHF  353 (555)
Q Consensus       274 ~~~~~~~~v~~~L~~~g~~~~~dGa~~~~~~g~~~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf  353 (555)
                      +|.+.++++++.|+++|+++++|||+|+++++.+.|+||+|||||+||+|+|||||+||++.+++|++|||||++|+.||
T Consensus       263 ~y~~~~~~vi~~L~~~g~~~e~dGa~~v~l~~~~~~~vl~ksDGt~tY~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~hf  342 (576)
T PLN02286        263 FYNPYIPGVIEELESKGLVVESDGARVIFVEGFDIPLIVVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHF  342 (576)
T ss_pred             hhhhhHHHHHHHHHHCCCEEeeCCceEeeccCCCCceEEEECCCchhhHHHHHHHHHHHHhccCCCEEEEEEeCcHHHHH
Confidence            99988999999999999999999999999887667899999999999999999999999987899999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 008744          354 DMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQ  433 (555)
Q Consensus       354 ~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~  433 (555)
                      +||+++++++|+.++  ++..++.|+.||||++.+|+|||||+|++|+|+||+++++.+|.+.+.+|++.+.+++++.++
T Consensus       343 ~~v~~~l~~lG~~~~--~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~  420 (576)
T PLN02286        343 DMVFKAAKRAGWLPE--DTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQ  420 (576)
T ss_pred             HHHHHHHHHcCCCcc--ccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHH
Confidence            999999999998521  113579999999998888999999999999999999999999999999987667789999999


Q ss_pred             HHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHH
Q 008744          434 TAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGL  513 (555)
Q Consensus       434 ~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~  513 (555)
                      +|+.+|++|+||++|++++.++++|||+++++++|||+|||||||||+||||||++.........+...+.++.|++|++
T Consensus       421 ~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~~~~~~l~~~~E~~L~~  500 (576)
T PLN02286        421 AAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKKTGKIVLDHPDERALGL  500 (576)
T ss_pred             HHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCccccccccccccCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999986432111111123466899999999


Q ss_pred             HHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccccccCC
Q 008744          514 HLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ  555 (555)
Q Consensus       514 ~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~Vl  555 (555)
                      .|++||++|..|+++++||.||.||++||+.||+||++||||
T Consensus       501 ~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~F~~fY~~~~Vl  542 (576)
T PLN02286        501 HLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNCKVN  542 (576)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcCccC
Confidence            999999999999999999999999999999999999999996

>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase Back     alignment and domain information
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>smart00836 DALR_1 DALR anticodon binding domain Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>PTZ00126 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02486 aminoacyl-tRNA ligase Back     alignment and domain information
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains Back     alignment and domain information
>PTZ00348 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12556 tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases Back     alignment and domain information
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases Back     alignment and domain information
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases Back     alignment and domain information
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated Back     alignment and domain information
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query555
1bs2_A607 Yeast Arginyl-Trna Synthetase Length = 607 2e-46
1iq0_A592 Thermus Thermophilus Arginyl-Trna Synthetase Length 3e-25
2zue_A629 Crystal Structure Of Pyrococcus Horikoshii Arginyl- 5e-23
3gdz_A109 Crystal Structure Of Arginyl-Trna Synthetase From K 5e-05
3fnr_A464 Crystal Structure Of Putative Arginyl T-Rna Synthet 6e-05
>pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase Length = 607 Back     alignment and structure 
Iteration: 1

 Score =  183 bits (464), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 150/500 (30%), Positives = 236/500 (47%), Gaps = 30/500 (6%)
Query: 67  KGPQPVGQAIM--KNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPK 124
           KG  P   A+   +  P  + +E     GP F+    +  ++AK +   ++   E +   
Sbjct: 79  KGANPKDLAVQWAEKFPCGDFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSC 137
Query: 125 LRV--KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFG 182
             V  KK +++FSSPNIAK  H GHLRSTIIG  LA + E    EV+R N++GDWG QFG
Sbjct: 138 KLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFG 197
Query: 183 MLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRF----DSDP---AFKERAQQAVVRLQ 235
           +L    FE++ N E   +  I  L + Y R         DS P   +   +A++   R++
Sbjct: 198 LL-AVGFERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRME 256
Query: 236 SGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGES-FYNPYIPGVIDELSKQGLVE 293
            G+ +  + W +  E S +++   Y RL +  +   GES      +   ID   ++GL  
Sbjct: 257 DGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTH 316
Query: 294 ESQGARVIFIEGVNIPL---IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQ 350
           E +GA +I +   N  L   I+ KSDG   Y + D+ A   R  +   + +IYV    Q 
Sbjct: 317 EDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQD 376
Query: 351 LHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK 410
           LH    F   K+ G+  A D       HV FG+V G     + TR   VV L ++L+E K
Sbjct: 377 LHAAQFFEILKQMGFEWAKD-----LQHVNFGMVQG-----MSTRKGTVVFLDNILEETK 426
Query: 411 NRSKAVLIERGKDKXXXXXXXXXXXXXVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNT 470
            +   V+ ++ ++K             VG  A    D++  R+ NY F +++ML+ +G+T
Sbjct: 427 EKMHEVM-KKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDT 485
Query: 471 AVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLL-HFSEVIEEALTNL 529
             YL YAH+R+ S+ R +    +E        L       L + LL  + +V+  A+   
Sbjct: 486 GPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTH 545
Query: 530 LPNVVCEYLYNLSEYFTRFY 549
            P  V  YL+ L+   +  Y
Sbjct: 546 EPTTVVTYLFKLTHQVSSCY 565
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase Length = 592 Back     alignment and structure
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna Synthetase Complexed With Trna(Arg) And An Atp Analog (Anp) Length = 629 Back     alignment and structure
>pdb|3GDZ|A Chain A, Crystal Structure Of Arginyl-Trna Synthetase From Klebsiella Pneumoniae Subsp. Pneumoniae Length = 109 Back     alignment and structure
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase From Campylobacter Jejuni Length = 464 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query555
1f7u_A607 Arginyl-tRNA synthetase; RNA-protein complex, amin 0.0
2zue_A629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 0.0
1iq0_A592 Arginyl-tRNA synthetase; riken structural genomics 1e-178
3fnr_A464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 1e-31
3gdz_A109 Arginyl-tRNA synthetase; klebsiella pneumoniae sub 1e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Length = 607 Back     alignment and structure
 Score =  646 bits (1668), Expect = 0.0
 Identities = 153/562 (27%), Positives = 252/562 (44%), Gaps = 38/562 (6%)

Query: 10  NVKRELEKVFDLALKATVPNETD-VRPLIAACT-AKFGDYQCNNAMGLWSKIKGKGTEFK 67
           N+   +       L      ++  + P +      + GD           +IKG      
Sbjct: 30  NIVDLMRNYISQELSKISGVDSSLIFPALEWTNTMERGDLLIPIPR---LRIKGAN---- 82

Query: 68  GPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIET--WAPKL 125
            P+ +     +  P  + +E     GP F+    +  ++AK +   ++   E       +
Sbjct: 83  -PKDLAVQWAEKFPCGDFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLV 140

Query: 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLI 185
             KK +++FSSPNIAK  H GHLRSTIIG  LA + E    EV+R N++GDWG QFG+L 
Sbjct: 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLA 200

Query: 186 EYLFEKFPNSEDANETAIGELQEFYRRSKNRFD-------SDPAFKERAQQAVVRLQSGE 238
              FE++ N E   +  I  L + Y R     +        + +   +A++   R++ G+
Sbjct: 201 VG-FERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGD 259

Query: 239 PKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGES-FYNPYIPGVIDELSKQGLVEESQ 296
            +  + W +  E S +++   Y RL +      GES      +   ID   ++GL  E +
Sbjct: 260 EEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDK 319

Query: 297 GARVIFIEGVNIPL---IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHF 353
           GA +I +   N  L   I+ KSDG   Y + D+ A   R  +   + +IYV    Q LH 
Sbjct: 320 GAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHA 379

Query: 354 DMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRS 413
              F   K+ G+  A         HV FG+V G     + TR   VV L ++L+E K + 
Sbjct: 380 AQFFEILKQMGFEWAK-----DLQHVNFGMVQG-----MSTRKGTVVFLDNILEETKEKM 429

Query: 414 KAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVY 473
             V +++ ++K    E  E+ A+ VG  A    D++  R+ NY F +++ML+ +G+T  Y
Sbjct: 430 HEV-MKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPY 488

Query: 474 LLYAHARICSIIRKSGKDIEELKKTGSL-VLDHADERALGLHLLHFSEVIEEALTNLLPN 532
           L YAH+R+ S+ R +    +E        +L     + L   L  + +V+  A+    P 
Sbjct: 489 LQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPT 548

Query: 533 VVCEYLYNLSEYFTRFYSNCQV 554
            V  YL+ L+   +  Y    V
Sbjct: 549 TVVTYLFKLTHQVSSCYDVLWV 570
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Length = 629 Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Length = 592 Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Length = 464 Back     alignment and structure
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp} Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query555
1f7u_A607 Arginyl-tRNA synthetase; RNA-protein complex, amin 100.0
2zue_A629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
1iq0_A592 Arginyl-tRNA synthetase; riken structural genomics 100.0
3fnr_A464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 100.0
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 100.0
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 100.0
1li5_A461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 100.0
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 100.0
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 100.0
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 100.0
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 100.0
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 100.0
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 99.97
3tqo_A462 Cysteinyl-tRNA synthetase; protein synthesis, liga 99.97
3sp1_A501 Cysteinyl-tRNA synthetase; structural genomics, se 99.96
3u1f_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 99.96
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 99.94
2o5r_A481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 99.93
3al0_C592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 99.93
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 99.92
1irx_A 523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 99.92
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 99.91
1gax_A 862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 99.91
2v0c_A 878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 99.9
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 99.89
3afh_A488 Glutamyl-tRNA synthetase 2; protein-substrate comp 99.88
1nzj_A298 Hypothetical protein YADB; Zn cluster, glutamyl T- 99.86
3gdz_A109 Arginyl-tRNA synthetase; klebsiella pneumoniae sub 99.84
4g6z_A490 Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, 99.82
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 99.8
2cfo_A492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 99.78
1j09_A468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 99.78
2ja2_A498 Glutamyl-tRNA synthetase; non-discriminating gluta 99.77
4gri_A512 Glutamate--tRNA ligase; structural genomics, seatt 99.75
3aii_A553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 99.66
1qtq_A 553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 99.55
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 99.52
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 98.25
2dlc_X394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 98.04
1n3l_A372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 97.95
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 97.42
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 97.39
3p0j_A 690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 96.75
3a04_A372 Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR 96.63
2pid_A356 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 95.86
2jan_A432 Tyrosyl-tRNA synthetase; protein biosynthesis, ami 95.34
2yxn_A322 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 95.31
1jil_A420 Tyrrs, tyrosyl-tRNA synthetase; truncation, based 95.2
2ts1_A419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 95.15
1h3f_A432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 94.76
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 94.75
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 94.7
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 94.54
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 94.08
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 94.06
1yi8_B351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 93.65
1y42_X392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 93.54
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 92.43
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 92.41
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 92.24
2yy5_A348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 92.22
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 92.11
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 91.8
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 91.68
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 91.01
3jxe_A392 Tryptophanyl-tRNA synthetase; adenosine triphospha 90.8
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 90.69
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 90.15
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 89.43
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 83.01
3prh_A388 Tryptophanyl-tRNA synthetase; TRPRS, protein biosy 82.31
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 81.01
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Back     alignment and structure
Probab=100.00  E-value=2.6e-110  Score=924.94  Aligned_cols=526  Identities=28%  Similarity=0.437  Sum_probs=451.7

Q ss_pred             HhHHHHHHHHHHHHHHhcCCCCC-CCccccccc-CCCCcccccchHHHHHHHhhcCCCCCCCchHHHHHHHhhCCCCCCc
Q 008744            9 GNVKRELEKVFDLALKATVPNET-DVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMI   86 (555)
Q Consensus         9 ~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~-~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i   86 (555)
                      +++.+.+++.|.+++.+.+.... ...+.+++| +++||||++|++|  +|.++      ++|++||++|+++|+.++.|
T Consensus        29 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~v~~~~~~~~GD~a~~~~~--~k~~~------~~P~~iA~~i~~~l~~~~~i  100 (607)
T 1f7u_A           29 VNIVDLMRNYISQELSKISGVDSSLIFPALEWTNTMERGDLLIPIPR--LRIKG------ANPKDLAVQWAEKFPCGDFL  100 (607)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCCCHHHHGGGCEECSSGGGCSEEEEGGG--GCCTT------CCHHHHHHHHHHTCCCTTTE
T ss_pred             ccHHHHHHHHHHHHHHHHhCCCccccccceeCCCCCCCCchhhHHHH--HHhcC------CCHHHHHHHHHHhccccCce
Confidence            35666677777777766532111 122345544 7789999998766  37777      99999999999999877889


Q ss_pred             eeeEEecCCeEEEEeCHHHHHHHH-HHHHHcCCC-CCCCcCCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHC
Q 008744           87 ESCSVAGPGFVNVVLSKNWMAKNI-QKMLVDGIE-TWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFS  164 (555)
Q Consensus        87 ~~v~v~gpGfiN~~l~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~  164 (555)
                      ++++++|| ||||+|+++++.+.+ ..++..+.. |..+.+++++|+||||||||+|||||||+||+||||+|+|+|+++
T Consensus       101 ~~ve~ag~-fiN~~l~~~~~~~~~~~~i~~~~~~~G~~~~~~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~  179 (607)
T 1f7u_A          101 EKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKL  179 (607)
T ss_dssp             EEEEEETT-EEEEEECHHHHHHHHHHHHHHHGGGTTCCCCSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEcCC-EEEEEECHHHHHHHHHHHHHhhhhhcCCCcccCCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHc
Confidence            99999996 999999999999755 456665544 333446789999999999999999999999999999999999999


Q ss_pred             CCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHHhcccCCC-------hHHHHHHHHHHHHHccC
Q 008744          165 NVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSD-------PAFKERAQQAVVRLQSG  237 (555)
Q Consensus       165 G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~-------~~~~~~~~~~~~~le~g  237 (555)
                      ||+|+++|||||||+||++++.+ +.++++.......++.++.++|+++++.++++       +.+.++|++.+++||+|
T Consensus       180 G~~V~~~~~i~D~G~Q~~~l~~~-~~~~g~~~~~~~~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~g  258 (607)
T 1f7u_A          180 GWEVIRMNYLGDWGKQFGLLAVG-FERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDG  258 (607)
T ss_dssp             TCEEEEEEEEBCCSHHHHHHHHH-HHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHT
T ss_pred             CCCeeEEEeecCcchHHHHHHHH-HHHhCchhhccCCChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCC
Confidence            99999999999999999999877 45565432223356888999999999988888       88999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eecccccC-CcHHHHHHHHHhCCCeeeecceEEEEec--CCCCC-eEE
Q 008744          238 EPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYN-PYIPGVIDELSKQGLVEESQGARVIFIE--GVNIP-LII  312 (555)
Q Consensus       238 d~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~-~~~es~~~-~~~~~v~~~L~~~g~~~~~dGa~~~~~~--g~~~d-~vl  312 (555)
                      |+++.++|++++++++++|+++|++|||+|| |.+||.|. +.++++++.|+++|++|+++|++||+++  |++.| +|+
T Consensus       259 d~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~g~~~d~~v~  338 (607)
T 1f7u_A          259 DEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIV  338 (607)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHHHHHHHHHHHHTTCEEEETTEEEEEGGGTCTTTCEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhhhHHHHHHHHHHhCCCEEEECCcEEEEecccCCCCCceeE
Confidence            9999999999999999999999999999995 78999887 7899999999999999999999999998  44544 899


Q ss_pred             EecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccc
Q 008744          313 VKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRL  392 (555)
Q Consensus       313 ~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~km  392 (555)
                      +||||+++|.|+|||+|+||+..+++|++|||||.+|+.||+|++++++++|++     ++..+.|++||+|.     ||
T Consensus       339 ~KsDG~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~-----~~~~~~Hv~fg~v~-----kM  408 (607)
T 1f7u_A          339 QKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFE-----WAKDLQHVNFGMVQ-----GM  408 (607)
T ss_dssp             ECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCG-----GGGGEEEECCCCEE-----SC
T ss_pred             eccCCCcCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCC-----cCcEEEEecccccc-----cc
Confidence            999999999999999999999778999999999999999999999999999994     45579999999986     49


Q ss_pred             eeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhH
Q 008744          393 RTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAV  472 (555)
Q Consensus       393 SkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~  472 (555)
                      |||+|++|+|+||++++..+|.+.+.++ +..-...++++++|+++|++|||||+|+.++.++++|||+++++++|||||
T Consensus       409 SkR~G~~v~L~dLlde~~~~a~~~~~~~-~~~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~p  487 (607)
T 1f7u_A          409 STRKGTVVFLDNILEETKEKMHEVMKKN-ENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGP  487 (607)
T ss_dssp             CGGGTCCCBHHHHHHHHHHHHHHHHHTC-HHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHH
T ss_pred             cCCCCCcccHHHHHHHHHHHHHHHHHhC-cccccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchH
Confidence            9999999999999999999887665522 100011357889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhC-CChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccccc
Q 008744          473 YLLYAHARICSIIRKSG-KDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSN  551 (555)
Q Consensus       473 ylqYa~aR~~silrk~~-~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~  551 (555)
                      ||||||||+|||+||+. .....+...+...+.++.|++|++.|.+||++++.|+++++||.+|.||++||+.||+||++
T Consensus       488 ylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~fn~fY~~  567 (607)
T 1f7u_A          488 YLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDV  567 (607)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999983 22211111122235689999999999999999999999999999999999999999999999


Q ss_pred             ccCC
Q 008744          552 CQVQ  555 (555)
Q Consensus       552 ~~Vl  555 (555)
                      ||||
T Consensus       568 ~~Vl  571 (607)
T 1f7u_A          568 LWVA  571 (607)
T ss_dssp             CCST
T ss_pred             CCCC
Confidence            9997
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Back     alignment and structure
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp} Back     alignment and structure
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* Back     alignment and structure
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* Back     alignment and structure
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Back     alignment and structure
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Back     alignment and structure
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 555
d1f7ua2348 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgR 3e-77
d1iq0a2370 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS 3e-64
d1f7ua1124 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgR 1e-16
d1iq0a1126 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgR 5e-16
d1li5a2315 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR 2e-08
d1irxa2317 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { 3e-08
d1iq0a396 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), 8e-08
d2d5ba2348 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR 6e-05
d1pfva2350 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe 3e-04
d1ivsa4425 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase 8e-04
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  245 bits (627), Expect = 3e-77
 Identities = 111/353 (31%), Positives = 176/353 (49%), Gaps = 24/353 (6%)

Query: 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEY 187
           KK +++FSSPNIAK  H GHLRSTIIG  LA + E    EV+R N++GDWG QFG+L   
Sbjct: 8   KKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVG 67

Query: 188 LFEKFPNSEDANETAIGELQEFYRRSKNRFDSD-------PAFKERAQQAVVRLQSGEPK 240
            FE++ N E   +  I  L + Y R     + +        +   +A++   R++ G+ +
Sbjct: 68  -FERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEE 126

Query: 241 YHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPY--IPGVIDELSKQGLVEESQGA 298
             + W +  E S +++   Y RL +  +            +   ID   ++GL  E +GA
Sbjct: 127 ALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGA 186

Query: 299 RVIFIEGVNIPL---IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDM 355
            +I +   N  L   I+ KSDG   Y + D+ A   R  +   + +IYV    Q LH   
Sbjct: 187 VLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQ 246

Query: 356 VFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKA 415
            F   K+ G+  A D       HV FG+V     + + TR   VV L ++L+E K +   
Sbjct: 247 FFEILKQMGFEWAKDLQ-----HVNFGMV-----QGMSTRKGTVVFLDNILEETKEKMHE 296

Query: 416 VLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG 468
           V +++ ++K    E  E+ A+ VG  A    D++  R+ NY F +++ML+ +G
Sbjct: 297 V-MKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEG 348
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Length = 370 Back     information, alignment and structure
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 Back     information, alignment and structure
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Length = 126 Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 Back     information, alignment and structure
>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Thermus thermophilus [TaxId: 274]} Length = 96 Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query555
d1f7ua2348 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 100.0
d1iq0a2370 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 100.0
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 99.97
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 99.96
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 99.93
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 99.93
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 99.92
d1ffya3450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.9
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 99.89
d1f7ua1124 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 99.85
d1rqga2361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 99.82
d1iq0a1126 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 99.82
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 99.73
d1iq0a396 Arginyl-tRNA synthetase (ArgRS), N-terminal 'addit 99.72
d1h3na3494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 99.72
d1nzja_286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 99.63
d1f7ua3134 Arginyl-tRNA synthetase (ArgRS), N-terminal 'addit 99.4
d1gtra2331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 99.37
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 97.71
d1n3la_339 Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie 97.51
d1rqga1 210 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 96.56
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 96.46
d1jila_323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 96.23
d1r6ta2386 Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo 95.83
d1pfva1162 Methionyl-tRNA synthetase (MetRS) {Escherichia col 95.81
d2d5ba1152 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 93.78
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-76  Score=615.65  Aligned_cols=333  Identities=32%  Similarity=0.501  Sum_probs=290.3

Q ss_pred             cCCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccH
Q 008744          124 KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAI  203 (555)
Q Consensus       124 ~~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i  203 (555)
                      .++++||+||||||||||||||||+||+||||+|||||+++||+|+|+|||||||+||++++.++.. ++........++
T Consensus         4 ~~~~kki~vE~~SaNpt~plHvGH~R~aiiGd~larlL~~~G~~V~re~yvnD~G~Qi~~l~~~~~~-~~~~~~~~~~~~   82 (348)
T d1f7ua2           4 LVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFER-YGNEEALVKDPI   82 (348)
T ss_dssp             CSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHH-HCCHHHHHHCHH
T ss_pred             CCCCCEEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHCCCeEEEEEEECCchHHHHHHHHHHHH-hccccccccccc
Confidence            3678999999999999999999999999999999999999999999999999999999999987643 332111223455


Q ss_pred             HHHHHHHHHHhcccCC-------ChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eeccc-c
Q 008744          204 GELQEFYRRSKNRFDS-------DPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGES-F  274 (555)
Q Consensus       204 ~~l~~~y~~~~~~~~~-------~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~-~~~es-~  274 (555)
                      .++.++|.++.+.++.       .+.+.+++++.+.++++||+++.++|+.+++.++..++++|++|||+|| |++|| +
T Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~~~l~i~fD~~~~Es~~  162 (348)
T d1f7ua2          83 HHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQV  162 (348)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGC
T ss_pred             hhHHHHHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc
Confidence            6666777666554322       2457788999999999999999999999999999999999999999996 77886 5


Q ss_pred             cCCcHHHHHHHHHhCCCeeeecceEEEEec--CCCCCe-EEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccc
Q 008744          275 YNPYIPGVIDELSKQGLVEESQGARVIFIE--GVNIPL-IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQL  351 (555)
Q Consensus       275 ~~~~~~~v~~~L~~~g~~~~~dGa~~~~~~--g~~~d~-vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~  351 (555)
                      +.+...++++.|+++|++++++||+|++++  |++.|+ +++||||++||+|+|||||.+|++.+++|++|||||++|++
T Consensus       163 ~~~~~~~v~~~L~~~~~~~~~~ga~~~~~~~~g~~~~~~vl~ksDG~~tY~t~DiAy~~~K~~~~~~D~~I~V~g~dq~~  242 (348)
T d1f7ua2         163 SKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDL  242 (348)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETTEEEEEGGGTCTTTCEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHH
T ss_pred             cccchHHHHHHHHhhccccccCCcccccchhhccccccceeccCCCccceecchHHhhhhhhhccCCCEEEEecccccch
Confidence            555567899999999999999999999987  665554 67899999999999999999999777999999999999999


Q ss_pred             cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Q 008744          352 HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEEL  431 (555)
Q Consensus       352 hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~  431 (555)
                      ||+++++++++||+.     ++..+.|+.||+|.     |||||+|++|+|+|||+++.++|.+.+.++.. ...+.++.
T Consensus       243 ~~~~l~~~l~~lg~~-----~~~~~~h~~~g~v~-----kMStR~G~~i~l~dll~e~~~~a~~~~~~~~~-~~~~~~~~  311 (348)
T d1f7ua2         243 HAAQFFEILKQMGFE-----WAKDLQHVNFGMVQ-----GMSTRKGTVVFLDNILEETKEKMHEVMKKNEN-KYAQIEHP  311 (348)
T ss_dssp             HHHHHHHHHHHTTCG-----GGGGEEEECCCCEE-----SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHH-HHTTCSCH
T ss_pred             hhhhHHHHHHHhCCC-----cccceeeecCCccc-----cccccCCCceEHHHHHHHHHHHHHHHHHhccC-cCCChhhH
Confidence            999999999999994     45679999999986     59999999999999999999999998887622 22344678


Q ss_pred             HHHHHhhhhhhHHHhhhccCCCCCccccccccccccC
Q 008744          432 EQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG  468 (555)
Q Consensus       432 ~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~  468 (555)
                      +++|+++|++|+||++|+++|.++++|||+++++++|
T Consensus       312 ~~ia~~vgv~ai~y~~L~~~~~~~~~Fd~d~~l~~eG  348 (348)
T d1f7ua2         312 EEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEG  348 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSS
T ss_pred             HHHHHHhhHHheehhhhhcCCCCCCEECHHHhcCCCC
Confidence            8999999999999999999999999999999999886
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure