Citrus Sinensis ID: 008745

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-----

MEAVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLADCS

cHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccHHcccc

cHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccEEEHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHccccccccccEcccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHcHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHEEcccc

MEAVAEGlwgladyhenkgEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYhlvgaippqkLILYKAldltssasQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYvcateisypDLQMFFATAILHVHLMQWDDENSVLRSINQCDRvwesidpnrrgqclGLLFYNELLHIFYRLRIcdyknaahhVDNLDAAMKADKQKMQEIQQLSSELDALnqslsrpdlpsreRSALAGRQAKLQQRLRSledssltgkeflepsyfgnarqawgdklvlapspmdgewlpkSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLgitdgvrevdlqHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIgdaesssqaidligpvyqmkdtingVREEASLHFAYGLLLMRQQDFQEARLADCS

MEAVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHThnvnhakshlERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQrlrsledssltgkEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLADCS

*****EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNL****************************************************************FLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ************

**AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSV*RSINQCDRVWE*IDP*****CLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAA********************LNQSLSRPDLPSRERSALAGRQAKLQQRLRSL*********************AWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGR**************************************HSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE*****IDLIGPVYQM*****GVREEASLHFAYGLLLMRQQDFQE*RLADC*

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MEAVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLADCS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		555	2.2.26 [Sep-21-2011]
Q16NZ8		620	MAU2 chromatid cohesion f	N/A	no	0.416	0.372	0.25	1e-08
B4PS83		632	MAU2 chromatid cohesion f	N/A	no	0.414	0.363	0.260	1e-08
Q9VFC0		632	MAU2 chromatid cohesion f	yes	no	0.414	0.363	0.260	1e-08
B0WYS3		616	MAU2 chromatid cohesion f	N/A	no	0.416	0.375	0.246	7e-08
Q9Y6X3		613	MAU2 chromatid cohesion f	yes	no	0.252	0.228	0.298	1e-07
Q9D2X5		619	MAU2 chromatid cohesion f	yes	no	0.252	0.226	0.298	1e-07
B1H1Z8		604	MAU2 chromatid cohesion f	yes	no	0.252	0.231	0.298	5e-07
B4JHK2		623	MAU2 chromatid cohesion f	N/A	no	0.450	0.401	0.241	6e-07
B4NKT1		663	MAU2 chromatid cohesion f	N/A	no	0.416	0.348	0.245	8e-07
B4ZIX8		607	MAU2 chromatid cohesion f	N/A	no	0.252	0.230	0.292	1e-06

>sp\|Q16NZ8\|SCC4_AEDAE MAU2 chromatid cohesion factor homolog OS=Aedes aegypti GN=AAEL011819 PE=3 SV=1	Back alignment and function desciption

 Score = 62.0 bits (149), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 25/256 (9%)

Query: 7   GLWGLADYHENKG--EIGKAVKCLEAICQSHVSFLPI--IEVKTRLRISTLLLKHTHNVN 62
            L GLA+Y        I K ++CL+A+     +F P   +E +T L++  +L+ +T N +
Sbjct: 11  SLLGLAEYFRTSSPPNIKKCIQCLQAL----FTFKPPLKVEARTHLQLGQILMAYTKNTD 66

Query: 63  HAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122
            A++HLE++ +L + I +  ++K  T SLL+Q Y         K +L KA++L+      
Sbjct: 67  LARNHLEQAWMLSENINNFDDVKFDTASLLAQLYQQQEQSSLAKPVLRKAIELSQHNV-- 124

Query: 123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLM 182
                W C    QLA     + +Y  +   L  G     E +   L+  F  +   + ++
Sbjct: 125 ----YWHCKLLFQLAQTHATDKEYALASELLAVGVESTDETNATYLKTLFLLSRAMIMMI 180

Query: 183 QWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHI-FYRLRICDYKNAAHHVD 241
           +      VL  +NQ   + ++   N        +   E L + FY L++C Y      V 
Sbjct: 181 E-RKTGDVLTILNQAGTMIDNAVQN--------IHLKEYLKVFFYVLQVCHYLQLG-QVK 230

Query: 242 NLDAAMKADKQKMQEI 257
            +  ++K  +Q +Q I
Sbjct: 231 TVKTSLKQLQQSIQTI 246

Required for association of the cohesin complex with chromatin during interphase. Plays a role in sister chromatid cohesion and normal progression through prometaphase.
Aedes aegypti (taxid: 7159)

>sp\|B4PS83\|SCC4_DROYA MAU2 chromatid cohesion factor homolog OS=Drosophila yakuba GN=GE24275 PE=3 SV=1	Back alignment and function description

>sp\|Q9VFC0\|SCC4_DROME MAU2 chromatid cohesion factor homolog OS=Drosophila melanogaster GN=CG4203 PE=2 SV=1	Back alignment and function description

>sp\|B0WYS3\|SCC4_CULQU MAU2 chromatid cohesion factor homolog OS=Culex quinquefasciatus GN=CPIJ012302 PE=3 SV=1	Back alignment and function description

>sp\|Q9Y6X3\|SCC4_HUMAN MAU2 chromatid cohesion factor homolog OS=Homo sapiens GN=MAU2 PE=1 SV=2	Back alignment and function description

>sp\|Q9D2X5\|SCC4_MOUSE MAU2 chromatid cohesion factor homolog OS=Mus musculus GN=Mau2 PE=2 SV=3	Back alignment and function description

>sp\|B1H1Z8\|SCC4_XENTR MAU2 chromatid cohesion factor homolog OS=Xenopus tropicalis GN=mau2 PE=2 SV=1	Back alignment and function description

>sp\|B4JHK2\|SCC4_DROGR MAU2 chromatid cohesion factor homolog OS=Drosophila grimshawi GN=GH18976 PE=3 SV=1	Back alignment and function description

>sp\|B4NKT1\|SCC4_DROWI MAU2 chromatid cohesion factor homolog OS=Drosophila willistoni GN=GK13302 PE=3 SV=2	Back alignment and function description

>sp\|B4ZIX8\|SCC4_XENLA MAU2 chromatid cohesion factor homolog OS=Xenopus laevis GN=mau2 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		555
297745732		722	unnamed protein product [Vitis vinifera]	0.992	0.763	0.776	0.0
225434291		755	PREDICTED: MAU2 chromatid cohesion facto	0.989	0.727	0.775	0.0
449456905		718	PREDICTED: uncharacterized protein LOC10	0.990	0.766	0.761	0.0
449515149		580	PREDICTED: uncharacterized protein LOC10	0.990	0.948	0.761	0.0
356500968		722	PREDICTED: uncharacterized protein LOC10	0.990	0.761	0.749	0.0
356553202		722	PREDICTED: uncharacterized protein LOC10	0.990	0.761	0.749	0.0
357491593		728	Cohesin loading complex subunit SCC4-lik	0.992	0.756	0.715	0.0
15242058		726	cohesin-load domain-containing protein [	0.985	0.753	0.671	0.0
110738000		726	hypothetical protein [Arabidopsis thalia	0.985	0.753	0.669	0.0
297792441		725	binding protein [Arabidopsis lyrata subs	0.985	0.754	0.669	0.0

>gi\|297745732\|emb\|CBI15788.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/551 (77%), Positives = 489/551 (88%)

Query: 1   MEAVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHN 60
           ME VAEGLWGLAD HE KGEIGKAVKCLEA+CQS VSFLPI+E+KTRLRI+TLLLKH+HN
Sbjct: 1   METVAEGLWGLADMHEKKGEIGKAVKCLEALCQSQVSFLPILEIKTRLRIATLLLKHSHN 60

Query: 61  VNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSAS 120
           +NHAKSHLERSQLLLK+IPSCFELKCR +SLLSQCYHLVGAIPPQK IL KAL+LT+S+ 
Sbjct: 61  LNHAKSHLERSQLLLKSIPSCFELKCRAYSLLSQCYHLVGAIPPQKQILNKALELTASSG 120

Query: 121 QDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVH 180
              AVKLW CNFNSQLANA IIEGDYQ+SISAL+ G+ CATEI Y +LQMFFAT+ILHVH
Sbjct: 121 DGFAVKLWFCNFNSQLANALIIEGDYQNSISALERGFNCATEICYIELQMFFATSILHVH 180

Query: 181 LMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHV 240
           LMQWDD N V R++N+C+ VW+SI+P++R Q LGLLFYNELLHIFYRLRICDYKNAA HV
Sbjct: 181 LMQWDDVNLVERAVNKCNEVWDSIEPDKRQQSLGLLFYNELLHIFYRLRICDYKNAAQHV 240

Query: 241 DNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLED 300
           D LDAAMKAD Q+MQ IQ+L+ ELDALNQSLSR DL   +RSAL+ +QA++Q++LR +  
Sbjct: 241 DKLDAAMKADLQQMQHIQELTKELDALNQSLSRHDLHYTDRSALSEKQAQVQEQLRRVTR 300

Query: 301 SSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLF 360
              +GKE LE +YFGN ++AWGDKL LAP P+DGEWLPKSAVY L+DLMVVI GRPKG F
Sbjct: 301 LGSSGKESLESAYFGNVKRAWGDKLDLAPPPIDGEWLPKSAVYGLIDLMVVIFGRPKGNF 360

Query: 361 KECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELT 420
           KEC +RIQSG++TIQ+ L+KLGI+D VREVDLQHSAIWMAGVYLMLLMQFLENKVAVELT
Sbjct: 361 KECGKRIQSGLRTIQEELMKLGISDSVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELT 420

Query: 421 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 480
           RS FVEAQEALVQM+NWF+RFPTILQACES+IEMLRGQYAHSVGC+SEAAFH++EAAK+T
Sbjct: 421 RSEFVEAQEALVQMRNWFLRFPTILQACESIIEMLRGQYAHSVGCFSEAAFHFIEAAKLT 480

Query: 481 ESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLL 540
           ESKSMQAMC  YAAVSY CIGDAESSSQA DLIGPVY+M D+  GVRE+ S+ FAYGLLL
Sbjct: 481 ESKSMQAMCQVYAAVSYICIGDAESSSQAFDLIGPVYRMMDSFVGVREKTSVLFAYGLLL 540

Query: 541 MRQQDFQEARL 551
           M+Q + QEAR+
Sbjct: 541 MKQHNLQEARI 551

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225434291\|ref\|XP_002275860.1\| PREDICTED: MAU2 chromatid cohesion factor homolog [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449456905\|ref\|XP_004146189.1\| PREDICTED: uncharacterized protein LOC101207429 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449515149\|ref\|XP_004164612.1\| PREDICTED: uncharacterized protein LOC101227912 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356500968\|ref\|XP_003519302.1\| PREDICTED: uncharacterized protein LOC100777199 [Glycine max]	Back alignment and taxonomy information

>gi\|356553202\|ref\|XP_003544947.1\| PREDICTED: uncharacterized protein LOC100780498 [Glycine max]	Back alignment and taxonomy information

>gi\|357491593\|ref\|XP_003616084.1\| Cohesin loading complex subunit SCC4-like protein [Medicago truncatula] gi\|355517419\|gb\|AES99042.1\| Cohesin loading complex subunit SCC4-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|15242058\|ref\|NP_199947.1\| cohesin-load domain-containing protein [Arabidopsis thaliana] gi\|9759280\|dbj\|BAB09745.1\| unnamed protein product [Arabidopsis thaliana] gi\|332008685\|gb\|AED96068.1\| cohesin-load domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|110738000\|dbj\|BAF00935.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297792441\|ref\|XP_002864105.1\| binding protein [Arabidopsis lyrata subsp. lyrata] gi\|297309940\|gb\|EFH40364.1\| binding protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		555
TAIR\|locus:2163655		726	AT5G51340 "AT5G51340" [Arabido	0.985	0.753	0.671	4.9e-204
UNIPROTKB\|B4PS83		632	GE24275 "MAU2 chromatid cohesi	0.412	0.362	0.265	6.4e-12
FB\|FBgn0038300		632	CG4203 [Drosophila melanogaste	0.412	0.362	0.265	1.7e-11
UNIPROTKB\|Q7PXE1		644	AgaP_AGAP001363 "AGAP001363-PA	0.414	0.357	0.270	3.3e-11
UNIPROTKB\|B3P0R4		632	GG16893 "MAU2 chromatid cohesi	0.412	0.362	0.261	3.5e-11
UNIPROTKB\|B4HE12		632	GM24202 "MAU2 chromatid cohesi	0.412	0.362	0.261	3.5e-11
UNIPROTKB\|B4QZ45		632	GD18992 "MAU2 chromatid cohesi	0.412	0.362	0.261	3.5e-11
UNIPROTKB\|Q9Y6X3		613	MAU2 "MAU2 chromatid cohesion	0.425	0.384	0.264	4.7e-11
MGI\|MGI:1921799		619	Mau2 "MAU2 chromatid cohesion	0.425	0.381	0.264	4.9e-11
RGD\|1308759		619	Mau2 "Mau2 chromatid cohesion	0.425	0.381	0.264	4.9e-11

TAIR\|locus:2163655 AT5G51340 "AT5G51340" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1974 (699.9 bits), Expect = 4.9e-204, P = 4.9e-204
 Identities = 368/548 (67%), Positives = 457/548 (83%)

Query:     3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVN 62
             AVAEGLWGLAD+H+  GEIGK +KCLEAICQS +SFLP++EVK+RLR++ LLL+++HNVN
Sbjct:     5 AVAEGLWGLADHHQKLGEIGKTIKCLEAICQSQISFLPLVEVKSRLRLAALLLRYSHNVN 64

Query:    63 HAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122
             HAKSHLERS LLLK+IPS ++LK + +SLLS CYHL+ + PPQ+ +L KAL+L SS  QD
Sbjct:    65 HAKSHLERSLLLLKSIPSSYDLKFQNYSLLSHCYHLLASFPPQRNLLVKALELASSVPQD 124

Query:   123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLM 182
             ++  LWSCNFNSQLAN FII+ D+ SS+SAL+SG++ A+ I +P+LQMFF  ++LHVH+M
Sbjct:   125 ISAYLWSCNFNSQLANTFIIQADFPSSLSALESGFLSASHICFPELQMFFTASMLHVHIM 184

Query:   183 QWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDN 242
             QW D+ SV +++ +CD +W++I  ++  +C GL FYNE+LH+FYRLR+CDYKNA HHVD 
Sbjct:   185 QWTDDYSVEKAVQRCDEIWQTISSDKTDRCPGLFFYNEMLHVFYRLRLCDYKNAQHHVDR 244

Query:   243 LDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSS 302
             LD AM A   KMQEIQQL  EL +LN SLSR DLPSRERSAL+ RQ++LQ R+ +L  SS
Sbjct:   245 LDQAMNAHSHKMQEIQQLLDELSSLNLSLSRYDLPSRERSALSARQSQLQDRVNALSPSS 304

Query:   303 LTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKE 362
              T    LEP+YFGN  + W +KL+L+PSP+DGEWLPKSA+ ALV LMVVI GRPKGLFKE
Sbjct:   305 STVNS-LEPAYFGNIDRGWTEKLLLSPSPIDGEWLPKSAIDALVHLMVVISGRPKGLFKE 363

Query:   363 CMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422
             C +RI+SG+Q IQD L+KLGITD VRE DL+H+AIWM+ V+LML MQFLEN+VA+ELTRS
Sbjct:   364 CSKRIESGLQIIQDELIKLGITDEVREADLRHTAIWMSRVFLMLQMQFLENRVALELTRS 423

Query:   423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482
              +VEA+EALV MKNWF RFPTILQA E MIEMLRGQY+HSVGCYSEAAFH +EA K+TES
Sbjct:   424 DYVEAEEALVDMKNWFTRFPTILQASECMIEMLRGQYSHSVGCYSEAAFHCIEATKLTES 483

Query:   483 KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR 542
              SMQA C A+AAVSY  IGDAESSS+A+DLIGP+  M ++++GVREEAS+ FAYGLLLM+
Sbjct:   484 ISMQASCQAFAAVSYLTIGDAESSSKALDLIGPLNGMTNSLSGVREEASILFAYGLLLMK 543

Query:   543 QQDFQEAR 550
             Q+D QEAR
Sbjct:   544 QRDLQEAR 551

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

UNIPROTKB\|B4PS83 GE24275 "MAU2 chromatid cohesion factor homolog" [Drosophila yakuba (taxid:7245)]	Back alignment and assigned GO terms

FB\|FBgn0038300 CG4203 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7PXE1 AgaP_AGAP001363 "AGAP001363-PA" [Anopheles gambiae (taxid:7165)]	Back alignment and assigned GO terms

UNIPROTKB\|B3P0R4 GG16893 "MAU2 chromatid cohesion factor homolog" [Drosophila erecta (taxid:7220)]	Back alignment and assigned GO terms

UNIPROTKB\|B4HE12 GM24202 "MAU2 chromatid cohesion factor homolog" [Drosophila sechellia (taxid:7238)]	Back alignment and assigned GO terms

UNIPROTKB\|B4QZ45 GD18992 "MAU2 chromatid cohesion factor homolog" [Drosophila simulans (taxid:7240)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y6X3 MAU2 "MAU2 chromatid cohesion factor homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1921799 Mau2 "MAU2 chromatid cohesion factor homolog (C. elegans)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1308759 Mau2 "Mau2 chromatid cohesion factor homolog (C. elegans)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		555
KOG2300		629	consensus Uncharacterized conserved protein [Funct	100.0
PF10345		608	Cohesin_load: Cohesin loading factor; InterPro: IP	100.0
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.74
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.67
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	98.64
PRK11447		1157	cellulose synthase subunit BcsC; Provisional	98.53
PRK11447		1157	cellulose synthase subunit BcsC; Provisional	98.49
TIGR00990		615	3a0801s09 mitochondrial precursor proteins import	98.35
PRK04841		903	transcriptional regulator MalT; Provisional	98.17
TIGR00990		615	3a0801s09 mitochondrial precursor proteins import	98.15
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	98.13
PF10345		608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.92
PRK11788		389	tetratricopeptide repeat protein; Provisional	97.83
PF09976		145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.68
PRK11788		389	tetratricopeptide repeat protein; Provisional	97.54
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	97.52
PRK04841		903	transcriptional regulator MalT; Provisional	97.43
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	97.33
cd05804		355	StaR_like StaR_like; a well-conserved protein foun	97.27
PF09976		145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.2
TIGR00540		409	hemY_coli hemY protein. This is an uncharacterized	97.19
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.12
KOG2002		1018	consensus TPR-containing nuclear phosphoprotein th	97.11
TIGR02521		234	type_IV_pilW type IV pilus biogenesis/stability pr	96.96
PRK14574		822	hmsH outer membrane protein; Provisional	96.96
TIGR02521		234	type_IV_pilW type IV pilus biogenesis/stability pr	96.89
TIGR03302		235	OM_YfiO outer membrane assembly lipoprotein YfiO.	96.73
PF13429		280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.36
PRK12370		553	invasion protein regulator; Provisional	96.26
PRK10747		398	putative protoheme IX biogenesis protein; Provisio	96.25
TIGR03302		235	OM_YfiO outer membrane assembly lipoprotein YfiO.	96.21
CHL00033		168	ycf3 photosystem I assembly protein Ycf3	96.11
PRK14574		822	hmsH outer membrane protein; Provisional	95.92
KOG4162		799	consensus Predicted calmodulin-binding protein [Si	95.77
PRK09782		987	bacteriophage N4 receptor, outer membrane subunit;	95.7
cd05804		355	StaR_like StaR_like; a well-conserved protein foun	95.69
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.57
PRK10370		198	formate-dependent nitrite reductase complex subuni	95.53
PF13424		78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.44
cd00189		100	TPR Tetratricopeptide repeat domain; typically con	95.34
TIGR00540		409	hemY_coli hemY protein. This is an uncharacterized	95.15
TIGR02795		119	tol_pal_ybgF tol-pal system protein YbgF. Members	94.76
PRK10370		198	formate-dependent nitrite reductase complex subuni	94.58
cd00189		100	TPR Tetratricopeptide repeat domain; typically con	94.49
PRK11189		296	lipoprotein NlpI; Provisional	94.48
PRK09782		987	bacteriophage N4 receptor, outer membrane subunit;	94.48
PRK10747		398	putative protoheme IX biogenesis protein; Provisio	94.42
KOG2300		629	consensus Uncharacterized conserved protein [Funct	94.39
TIGR02795		119	tol_pal_ybgF tol-pal system protein YbgF. Members	94.06
TIGR02552		135	LcrH_SycD type III secretion low calcium response	94.03
PRK02603		172	photosystem I assembly protein Ycf3; Provisional	94.03
PF13432		65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	94.01
PF13424		78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	93.84
KOG1840		508	consensus Kinesin light chain [Cytoskeleton]	93.78
KOG1126		638	consensus DNA-binding cell division cycle control	93.5
PF04733		290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	93.48
PF13414		69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	93.33
PRK12370		553	invasion protein regulator; Provisional	93.06
PF12895		84	Apc3: Anaphase-promoting complex, cyclosome, subun	92.91
TIGR02552		135	LcrH_SycD type III secretion low calcium response	92.72
PRK15359		144	type III secretion system chaperone protein SscB;	92.63
PF13432		65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	92.56
PF10602		177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.5
PF12688		120	TPR_5: Tetratrico peptide repeat	92.38
COG2976		207	Uncharacterized protein conserved in bacteria [Fun	92.05
PF12895		84	Apc3: Anaphase-promoting complex, cyclosome, subun	91.98
PRK02603		172	photosystem I assembly protein Ycf3; Provisional	91.83
PF13414		69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	91.77
PRK10803		263	tol-pal system protein YbgF; Provisional	91.63
PF13429		280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	91.56
PRK11189		296	lipoprotein NlpI; Provisional	91.54
PLN03088		356	SGT1, suppressor of G2 allele of SKP1; Provisional	91.54
CHL00033		168	ycf3 photosystem I assembly protein Ycf3	91.3
KOG3060		289	consensus Uncharacterized conserved protein [Funct	91.22
PF13371		73	TPR_9: Tetratricopeptide repeat	91.0
PRK15359		144	type III secretion system chaperone protein SscB;	90.83
PRK15363		157	pathogenicity island 2 chaperone protein SscA; Pro	90.81
KOG1840		508	consensus Kinesin light chain [Cytoskeleton]	90.45
KOG3060		289	consensus Uncharacterized conserved protein [Funct	89.93
PRK15179		694	Vi polysaccharide biosynthesis protein TviE; Provi	89.87
COG5010		257	TadD Flp pilus assembly protein TadD, contains TPR	89.41
PF10300		468	DUF3808: Protein of unknown function (DUF3808); In	89.08
COG2956		389	Predicted N-acetylglucosaminyl transferase [Carboh	88.98
KOG1173		611	consensus Anaphase-promoting complex (APC), Cdc16	88.41
PRK10153		517	DNA-binding transcriptional activator CadC; Provis	88.33
PF10602		177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	88.33
PF07719		34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	88.23
PF13525		203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	88.15
PF09295		395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	87.98
PLN03088		356	SGT1, suppressor of G2 allele of SKP1; Provisional	86.8
PF08631		278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	86.7
PF12688		120	TPR_5: Tetratrico peptide repeat	86.11
PRK15363		157	pathogenicity island 2 chaperone protein SscA; Pro	85.96
PRK10803		263	tol-pal system protein YbgF; Provisional	85.79
PF09295		395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	85.47
KOG3081		299	consensus Vesicle coat complex COPI, epsilon subun	85.18
PF13181		34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	85.12
COG4649		221	Uncharacterized protein conserved in bacteria [Fun	84.81
COG3063		250	PilF Tfp pilus assembly protein PilF [Cell motilit	84.77
PF00515		34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	84.55
PF12862		94	Apc5: Anaphase-promoting complex subunit 5	84.33
PF14559		68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	82.64
PF10300		468	DUF3808: Protein of unknown function (DUF3808); In	82.48
KOG0547		606	consensus Translocase of outer mitochondrial membr	82.14
KOG2076		895	consensus RNA polymerase III transcription factor	81.55

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=2.9e-114  Score=906.13  Aligned_cols=458  Identities=39%  Similarity=0.637  Sum_probs=432.8

Q ss_pred             hhHHHHHHHhHHHHHhhc--cHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCC
Q 008745            2 EAVAEGLWGLADYHENKG--EIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIP   79 (555)
Q Consensus         2 ~~~~~~Ll~lAe~fr~~~--~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~   79 (555)
                      ||||++||||||+|||++  +|++|||||+|+|+|++  |.++|||||||+|.+||.||||+++||+||||||+++++||
T Consensus         4 dAva~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~i--s~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip   81 (629)
T KOG2300|consen    4 DAVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQI--SFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIP   81 (629)
T ss_pred             hHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCC--hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccc
Confidence            599999999999999999  99999999999999999  99999999999999999999999999999999999999999


Q ss_pred             cchhhhhhHHHHHHHHHHHcC-CCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHH
Q 008745           80 SCFELKCRTFSLLSQCYHLVG-AIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYV  158 (555)
Q Consensus        80 ~~~dlK~~a~sLLa~~y~~~~-~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~  158 (555)
                      +|+|+||.++||||++|++.+ +.+++|+.|||+|+++++      .++|+|+|+||||++|.+++||.+|++.|..|+.
T Consensus        82 ~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~------~p~wsckllfQLaql~~idkD~~sA~elLavga~  155 (629)
T KOG2300|consen   82 SFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQS------VPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAE  155 (629)
T ss_pred             cHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC------CchhhHHHHHHHHHHHhhhccchhHHHHHhcccc
Confidence            999999999999999999999 779999999999999998      8899999999999999999999999999999999


Q ss_pred             HHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHH-HHhhhhhhhhh
Q 008745          159 CATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFY-RLRICDYKNAA  237 (555)
Q Consensus       159 ~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~vfy-~lrvc~y~~a~  237 (555)
                      .|...+.+|++++|.++++|+++|+| |..+|++++++|+++|+        ++++.+.++|+||||| +|++|+|...|
T Consensus       156 sAd~~~~~ylr~~ftls~~~ll~me~-d~~dV~~ll~~~~qi~~--------n~~sdk~~~E~LkvFyl~lql~yy~~~g  226 (629)
T KOG2300|consen  156 SADHICFPYLRMLFTLSMLMLLIMER-DDYDVEKLLQRCGQIWQ--------NISSDKTQKEMLKVFYLVLQLSYYLLPG  226 (629)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHh--------ccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999997 77999999999999999        8999999999999999 99999999999


Q ss_pred             hhhhhhHHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHhcccCCCCCcCcCCcccccCc
Q 008745          238 HHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNA  317 (555)
Q Consensus       238 ~~v~~ld~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~~~~~k~kqLQ~~lq~i~~~~~~~~~~~~~~~~~~~  317 (555)
                      | |++                        ++++|                 ||||+++++|+.|+|              
T Consensus       227 q-~rt------------------------~k~~l-----------------kQLQ~siqtist~~~--------------  250 (629)
T KOG2300|consen  227 Q-VRT------------------------VKPAL-----------------KQLQDSIQTISTSSR--------------  250 (629)
T ss_pred             c-hhh------------------------hHHHH-----------------HHHHHHHhccCCCCC--------------
Confidence            9 777                        78999                 999999999999886              


Q ss_pred             ccccCcccccCCCCCc-cccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhH
Q 008745          318 RQAWGDKLVLAPSPMD-GEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSA  396 (555)
Q Consensus       318 ~~~~~d~~~~~~~~l~-f~WLPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~  396 (555)
                         ..|+-.+|.|+++ |+||||+++|||||++||+|+||+|+|+||.||.+|++.+    .+|+.--|.          
T Consensus       251 ---~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q----~eklkq~d~----------  313 (629)
T KOG2300|consen  251 ---GHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQ----TEKLKQADL----------  313 (629)
T ss_pred             ---CccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHH----Hhhcccccc----------
Confidence               5565667766555 9999999999999999999999999999999999999999    455443332          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc--hhhhhhhHHHHHHHHHHHHhCCHHHHHHHHH
Q 008745          397 IWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPT--ILQACESMIEMLRGQYAHSVGCYSEAAFHYV  474 (555)
Q Consensus       397 ~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~--ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~  474 (555)
                        +.+++.|++|++|||+|+|++++|++++|.++|.+|++||.++|+  +++.++|+|||++|+|+||+|||++|++||.
T Consensus       314 --~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~  391 (629)
T KOG2300|consen  314 --MSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFI  391 (629)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHH
Confidence              557888899999999999999999999999999999999999998  9999999999999999999999999999999


Q ss_pred             HHHhhcCChhHHHHHHHHHHHHHhhcCCcccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhhc
Q 008745          475 EAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLAD  553 (555)
Q Consensus       475 ~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~~  553 (555)
                      +|.|+|.+.+++++|++|+|++||+.++.+++++++|+|+|..+.+.+  |.+++++++||+|+.+|+|++++|||+..
T Consensus       392 ~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~s--sq~l~a~~~~v~glfaf~qn~lnEaK~~l  468 (629)
T KOG2300|consen  392 EATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLS--SQRLEASILYVYGLFAFKQNDLNEAKRFL  468 (629)
T ss_pred             HHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcch--HHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            999999999999999999999999999999999999999999766544  45559999999999999999999999863

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>PRK11447 cellulose synthase subunit BcsC; Provisional	Back alignment and domain information

>PRK11447 cellulose synthase subunit BcsC; Provisional	Back alignment and domain information

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	Back alignment and domain information

>PRK04841 transcriptional regulator MalT; Provisional	Back alignment and domain information

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>PRK04841 transcriptional regulator MalT; Provisional	Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals	Back alignment and domain information

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function	Back alignment and domain information

>TIGR00540 hemY_coli hemY protein	Back alignment and domain information

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW	Back alignment and domain information

>PRK14574 hmsH outer membrane protein; Provisional	Back alignment and domain information

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW	Back alignment and domain information

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO	Back alignment and domain information

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>PRK10747 putative protoheme IX biogenesis protein; Provisional	Back alignment and domain information

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO	Back alignment and domain information

>CHL00033 ycf3 photosystem I assembly protein Ycf3	Back alignment and domain information

>PRK14574 hmsH outer membrane protein; Provisional	Back alignment and domain information

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]	Back alignment and domain information

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional	Back alignment and domain information

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals	Back alignment and domain information

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional	Back alignment and domain information

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H	Back alignment and domain information

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Back alignment and domain information

>TIGR00540 hemY_coli hemY protein	Back alignment and domain information

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF	Back alignment and domain information

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional	Back alignment and domain information

Back alignment and domain information

>PRK11189 lipoprotein NlpI; Provisional	Back alignment and domain information

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional	Back alignment and domain information

>PRK10747 putative protoheme IX biogenesis protein; Provisional	Back alignment and domain information

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF	Back alignment and domain information

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD	Back alignment and domain information

>PRK02603 photosystem I assembly protein Ycf3; Provisional	Back alignment and domain information

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B	Back alignment and domain information

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H	Back alignment and domain information

>KOG1840 consensus Kinesin light chain [Cytoskeleton]	Back alignment and domain information

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A	Back alignment and domain information

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD	Back alignment and domain information

>PRK15359 type III secretion system chaperone protein SscB; Provisional	Back alignment and domain information

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B	Back alignment and domain information

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome	Back alignment and domain information

>PF12688 TPR_5: Tetratrico peptide repeat	Back alignment and domain information

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A	Back alignment and domain information

>PRK02603 photosystem I assembly protein Ycf3; Provisional	Back alignment and domain information

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A	Back alignment and domain information

>PRK10803 tol-pal system protein YbgF; Provisional	Back alignment and domain information

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B	Back alignment and domain information

>PRK11189 lipoprotein NlpI; Provisional	Back alignment and domain information

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional	Back alignment and domain information

>CHL00033 ycf3 photosystem I assembly protein Ycf3	Back alignment and domain information

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13371 TPR_9: Tetratricopeptide repeat	Back alignment and domain information

>PRK15359 type III secretion system chaperone protein SscB; Provisional	Back alignment and domain information

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional	Back alignment and domain information

>KOG1840 consensus Kinesin light chain [Cytoskeleton]	Back alignment and domain information

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional	Back alignment and domain information

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]	Back alignment and domain information

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans	Back alignment and domain information

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK10153 DNA-binding transcriptional activator CadC; Provisional	Back alignment and domain information

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome	Back alignment and domain information

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]	Back alignment and domain information

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A	Back alignment and domain information

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi	Back alignment and domain information

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional	Back alignment and domain information

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []	Back alignment and domain information

>PF12688 TPR_5: Tetratrico peptide repeat	Back alignment and domain information

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional	Back alignment and domain information

>PRK10803 tol-pal system protein YbgF; Provisional	Back alignment and domain information

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi	Back alignment and domain information

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A	Back alignment and domain information

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]	Back alignment and domain information

>PF12862 Apc5: Anaphase-promoting complex subunit 5	Back alignment and domain information

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A	Back alignment and domain information

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans	Back alignment and domain information

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		555
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 84/579 (14%), Positives = 168/579 (29%), Gaps = 163/579 (28%)

Query: 8   LWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLK-------HTHN 60
            W L    E   +     K +E + + +  FL +  +KT  R  +++ +         +N
Sbjct: 68  FWTLLSKQEEMVQ-----KFVEEVLRINYKFL-MSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 61  VNH--AKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILY------KA 112
            N   AK ++ R Q  LK   +  EL+                 P + +++       K 
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELR-----------------PAKNVLIDGVLGSGKT 164

Query: 113 LDLTSSASQDVAVKLWSCNFNSQ-----LANAFIIEGD---YQSSISALQSGYVCATEIS 164
             +         V+   C  + +     L N    E      Q  +  +   +   ++ S
Sbjct: 165 W-VALDVCLSYKVQ---CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 165 Y-PDLQMFFATAILHVHLMQWDDENS--VLRSINQCD-RVWESIDPNRRGQCLGLLFYNE 220
               L++    A L   L     EN   VL ++   + + W + +      C  LL    
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAWNAFN----LSCKILL---- 270

Query: 221 LLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQL----SSELDALNQSLSRPDL 276
                       +K      D L AA             L       L          DL
Sbjct: 271 ---------TTRFKQVT---DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 277 PSRERS----ALAGRQAKLQQ--------------RLRSLEDSSLTGKEFLEPSYFGNAR 318
           P    +     L+     ++               +L ++ +SSL     LEP+ +   R
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL---NVLEPAEY---R 372

Query: 319 QA---------------------WGDKLVLAPSPMDGEWLPKSAV--------YALVDLM 349
           +                      W D +      +  +    S V         ++  + 
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 350 VVILGRPKG---LFKECMQRIQSGMQTIQDALLKLGITDG---------VREVDLQHSAI 397
           + +  + +    L +  +           D L+   + D          ++ ++      
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL-DQYFYSHIGHHLKNIEHPERMT 491

Query: 398 WMAGVYLMLLMQFLENKV-AVELTRSGFVEAQEALVQMKNW--FIR--FPTILQACESMI 452
               V+L    +FLE K+       +        L Q+K +  +I    P   +   +++
Sbjct: 492 LFRMVFLDF--RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549

Query: 453 EMLRGQYAHSVGC----------YSEAAFHYVEAAKITE 481
           + L     + +             +E    + EA K  +
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		555
3sf4_A		406	G-protein-signaling modulator 2; tetratricopeptide	99.48
4a1s_A		411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.37
3ro2_A		338	PINS homolog, G-protein-signaling modulator 2; TPR	99.36
3sf4_A		406	G-protein-signaling modulator 2; tetratricopeptide	99.22
4a1s_A		411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.12
3ro2_A		338	PINS homolog, G-protein-signaling modulator 2; TPR	99.11
1w3b_A		388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.04
3ieg_A		359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.94
2gw1_A		514	Mitochondrial precursor proteins import receptor;	98.92
3ulq_A		383	Response regulator aspartate phosphatase F; tetrat	98.89
3ieg_A		359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.81
1hz4_A		373	MALT regulatory protein; two-helix bundles, helix	98.8
3q15_A		378	PSP28, response regulator aspartate phosphatase H;	98.73
2y4t_A		450	DNAJ homolog subfamily C member 3; chaperone, endo	98.72
1w3b_A		388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.72
2xpi_A		597	Anaphase-promoting complex subunit CUT9; cell cycl	98.69
2y4t_A		450	DNAJ homolog subfamily C member 3; chaperone, endo	98.64
2gw1_A		514	Mitochondrial precursor proteins import receptor;	98.62
1hz4_A		373	MALT regulatory protein; two-helix bundles, helix	98.6
3fp2_A		537	TPR repeat-containing protein YHR117W; TOM71, mito	98.59
3ro3_A		164	PINS homolog, G-protein-signaling modulator 2; asy	98.53
3hym_B		330	Cell division cycle protein 16 homolog; APC, anaph	98.53
3gw4_A		203	Uncharacterized protein; structural genomics, PSI-	98.52
3fp2_A		537	TPR repeat-containing protein YHR117W; TOM71, mito	98.48
2xpi_A		597	Anaphase-promoting complex subunit CUT9; cell cycl	98.45
4g1t_A		472	Interferon-induced protein with tetratricopeptide	98.44
3u4t_A		272	TPR repeat-containing protein; structural genomics	98.43
3ulq_A		383	Response regulator aspartate phosphatase F; tetrat	98.42
3q15_A		378	PSP28, response regulator aspartate phosphatase H;	98.36
3ro3_A		164	PINS homolog, G-protein-signaling modulator 2; asy	98.36
4eqf_A		365	PEX5-related protein; accessory protein, tetratric	98.32
3gw4_A		203	Uncharacterized protein; structural genomics, PSI-	98.29
3cv0_A		327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.28
4eqf_A		365	PEX5-related protein; accessory protein, tetratric	98.24
3nf1_A		311	KLC 1, kinesin light chain 1; TPR, structural geno	98.23
3nf1_A		311	KLC 1, kinesin light chain 1; TPR, structural geno	98.23
3edt_B		283	KLC 2, kinesin light chain 2; superhelical, struct	98.2
3hym_B		330	Cell division cycle protein 16 homolog; APC, anaph	98.19
1fch_A		368	Peroxisomal targeting signal 1 receptor; protein-p	98.15
3edt_B		283	KLC 2, kinesin light chain 2; superhelical, struct	98.13
3u3w_A		293	Transcriptional activator PLCR protein; ternary co	98.01
1qqe_A		292	Vesicular transport protein SEC17; helix-turn-heli	98.01
3qky_A		261	Outer membrane assembly lipoprotein YFIO; membrane	98.0
2ifu_A		307	Gamma-SNAP; membrane fusion, snare complex disasse	97.99
2qfc_A		293	PLCR protein; TPR, HTH, transcription regulation;	97.97
2ifu_A		307	Gamma-SNAP; membrane fusion, snare complex disasse	97.95
3u3w_A		293	Transcriptional activator PLCR protein; ternary co	97.94
2qfc_A		293	PLCR protein; TPR, HTH, transcription regulation;	97.94
3cv0_A		327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.8
3vtx_A		184	MAMA; tetratricopeptide repeats (TPR) containing p	97.77
3uq3_A		258	Heat shock protein STI1; HSP90, peptide binding, c	97.73
3vtx_A		184	MAMA; tetratricopeptide repeats (TPR) containing p	97.73
3uq3_A		258	Heat shock protein STI1; HSP90, peptide binding, c	97.71
2pl2_A		217	Hypothetical conserved protein TTC0263; TPR, prote	97.7
3as5_A		186	MAMA; tetratricopeptide repeats (TPR) containing p	97.68
1qqe_A		292	Vesicular transport protein SEC17; helix-turn-heli	97.67
1fch_A		368	Peroxisomal targeting signal 1 receptor; protein-p	97.65
2q7f_A		243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.63
2ho1_A		252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.62
2vq2_A		225	PILW, putative fimbrial biogenesis and twitching m	97.61
3u4t_A		272	TPR repeat-containing protein; structural genomics	97.59
2pl2_A		217	Hypothetical conserved protein TTC0263; TPR, prote	97.58
1a17_A		166	Serine/threonine protein phosphatase 5; hydrolase,	97.57
4i17_A		228	Hypothetical protein; TPR repeats protein, structu	97.56
2ho1_A		252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.54
4gyw_A		723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.54
4b4t_Q		434	26S proteasome regulatory subunit RPN6; hydrolase,	97.45
2yhc_A		225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.41
2vq2_A		225	PILW, putative fimbrial biogenesis and twitching m	97.39
4g1t_A		472	Interferon-induced protein with tetratricopeptide	97.39
2fo7_A		136	Synthetic consensus TPR protein; tetratricopeptide	97.38
2q7f_A		243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.36
3as5_A		186	MAMA; tetratricopeptide repeats (TPR) containing p	97.34
3qky_A		261	Outer membrane assembly lipoprotein YFIO; membrane	97.3
2yhc_A		225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.2
4ga2_A		150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.19
4gcn_A		127	Protein STI-1; structural genomics, PSI-biology, m	97.17
1hh8_A		213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.16
1elr_A		131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.12
4gyw_A		723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.11
1xnf_A		275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.06
3mkr_A		291	Coatomer subunit epsilon; tetratricopeptide repeat	97.05
1xnf_A		275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.03
3urz_A		208	Uncharacterized protein; tetratricopeptide repeats	97.01
4b4t_Q		434	26S proteasome regulatory subunit RPN6; hydrolase,	97.0
4abn_A		474	Tetratricopeptide repeat protein 5; P53 cofactor,	96.92
4i17_A		228	Hypothetical protein; TPR repeats protein, structu	96.88
1ouv_A		273	Conserved hypothetical secreted protein; TPR repea	96.85
2dba_A		148	Smooth muscle cell associated protein-1, isoform 2	96.84
2vsy_A		568	XCC0866; transferase, glycosyl transferase, GT-B,	96.83
3gyz_A		151	Chaperone protein IPGC; asymmetric homodimer, tetr	96.82
3urz_A		208	Uncharacterized protein; tetratricopeptide repeats	96.8
2xev_A		129	YBGF; tetratricopeptide, alpha-helical, metal bind	96.79
2pzi_A		681	Probable serine/threonine-protein kinase PKNG; ATP	96.75
2xm6_A		490	Protein corresponding to locus C5321 from CFT073 s	96.73
4abn_A		474	Tetratricopeptide repeat protein 5; P53 cofactor,	96.65
3mkr_A		291	Coatomer subunit epsilon; tetratricopeptide repeat	96.64
1elr_A		131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	96.62
2vsy_A		568	XCC0866; transferase, glycosyl transferase, GT-B,	96.59
3rkv_A		162	Putative peptidylprolyl isomerase; structural geno	96.51
4gco_A		126	Protein STI-1; structural genomics, PSI-biology, m	96.5
2lni_A		133	Stress-induced-phosphoprotein 1; structural genomi	96.5
2vyi_A		131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.46
2e2e_A		177	Formate-dependent nitrite reductase complex NRFG;	96.43
3q49_B		137	STIP1 homology and U box-containing protein 1; E3	96.41
4gcn_A		127	Protein STI-1; structural genomics, PSI-biology, m	96.38
2vyi_A		131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.36
2xev_A		129	YBGF; tetratricopeptide, alpha-helical, metal bind	96.31
3sz7_A		164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	96.29
2fo7_A		136	Synthetic consensus TPR protein; tetratricopeptide	96.27
3rkv_A		162	Putative peptidylprolyl isomerase; structural geno	96.24
3sz7_A		164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	96.24
2pzi_A		681	Probable serine/threonine-protein kinase PKNG; ATP	96.23
1ouv_A		273	Conserved hypothetical secreted protein; TPR repea	96.22
1hh8_A		213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	96.21
3upv_A		126	Heat shock protein STI1; TPR-fold, adaptor protein	96.2
4ga2_A		150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.17
1a17_A		166	Serine/threonine protein phosphatase 5; hydrolase,	96.16
3qou_A		287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.15
2h6f_A		382	Protein farnesyltransferase/geranylgeranyltransfer	96.11
2e2e_A		177	Formate-dependent nitrite reductase complex NRFG;	96.07
3upv_A		126	Heat shock protein STI1; TPR-fold, adaptor protein	96.07
1elw_A		118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	96.02
2lni_A		133	Stress-induced-phosphoprotein 1; structural genomi	96.0
2r5s_A		176	Uncharacterized protein VP0806; APC090868.1, vibri	96.0
2fbn_A		198	70 kDa peptidylprolyl isomerase, putative; sulfur	95.95
3q49_B		137	STIP1 homology and U box-containing protein 1; E3	95.92
2kck_A		112	TPR repeat; tetratricopeptide repeat, structural g	95.9
1na0_A		125	Designed protein CTPR3; de novo protein; HET: IPT;	95.86
2ond_A		308	Cleavage stimulation factor 77 kDa subunit; HAT do	95.85
2vgx_A		148	Chaperone SYCD; alternative dimer assembly, tetrat	95.83
4b4t_P		445	26S proteasome regulatory subunit RPN5; hydrolase,	95.81
1elw_A		118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	95.81
1hxi_A		121	PEX5, peroxisome targeting signal 1 receptor PEX5;	95.8
2xm6_A		490	Protein corresponding to locus C5321 from CFT073 s	95.78
2xcb_A		142	PCRH, regulatory protein PCRH; protein transport,	95.78
2dba_A		148	Smooth muscle cell associated protein-1, isoform 2	95.77
3gyz_A		151	Chaperone protein IPGC; asymmetric homodimer, tetr	95.69
1na0_A		125	Designed protein CTPR3; de novo protein; HET: IPT;	95.65
4f3v_A		282	ESX-1 secretion system protein ECCA1; tetratricope	95.63
2xcb_A		142	PCRH, regulatory protein PCRH; protein transport,	95.57
2h6f_A		382	Protein farnesyltransferase/geranylgeranyltransfer	95.52
3rjv_A		212	Putative SEL1 repeat protein; alpha-alpha superhel	95.51
4gco_A		126	Protein STI-1; structural genomics, PSI-biology, m	95.45
2fbn_A		198	70 kDa peptidylprolyl isomerase, putative; sulfur	95.44
2r5s_A		176	Uncharacterized protein VP0806; APC090868.1, vibri	95.44
3k9i_A		117	BH0479 protein; putative protein binding protein,	95.43
2hr2_A		159	Hypothetical protein; alpha-alpha superhelix fold,	95.37
3txn_A		394	26S proteasome regulatory complex subunit P42B; PC	95.3
1p5q_A		336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	95.29
2ond_A		308	Cleavage stimulation factor 77 kDa subunit; HAT do	94.95
1p5q_A		336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	94.81
2vgx_A		148	Chaperone SYCD; alternative dimer assembly, tetrat	94.79
3qou_A		287	Protein YBBN; thioredoxin-like fold, tetratricopep	94.79
2kck_A		112	TPR repeat; tetratricopeptide repeat, structural g	94.73
3k9i_A		117	BH0479 protein; putative protein binding protein,	94.68
1hxi_A		121	PEX5, peroxisome targeting signal 1 receptor PEX5;	94.57
2c2l_A		281	CHIP, carboxy terminus of HSP70-interacting protei	94.54
2l6j_A		111	TPR repeat-containing protein associated with HSP;	94.21
1kt0_A		457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	93.8
1kt0_A		457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	93.6
1na3_A		91	Designed protein CTPR2; de novo protein; HET: IPT;	93.58
2ooe_A		530	Cleavage stimulation factor 77 kDa subunit; HAT do	93.54
2l6j_A		111	TPR repeat-containing protein associated with HSP;	93.5
1wao_1		477	Serine/threonine protein phosphatase 5; hydrolase,	93.49
1ihg_A		370	Cyclophilin 40; ppiase immunophilin tetratricopept	93.48
2c2l_A		281	CHIP, carboxy terminus of HSP70-interacting protei	93.35
1ihg_A		370	Cyclophilin 40; ppiase immunophilin tetratricopept	93.28
2ooe_A		530	Cleavage stimulation factor 77 kDa subunit; HAT do	93.13
2kat_A		115	Uncharacterized protein; NESG, structure, structur	92.75
3rjv_A		212	Putative SEL1 repeat protein; alpha-alpha superhel	92.71
1na3_A		91	Designed protein CTPR2; de novo protein; HET: IPT;	92.37
3ma5_A		100	Tetratricopeptide repeat domain protein; NESG, str	92.23
1wao_1		477	Serine/threonine protein phosphatase 5; hydrolase,	92.13
3ma5_A		100	Tetratricopeptide repeat domain protein; NESG, str	92.12
4f3v_A		282	ESX-1 secretion system protein ECCA1; tetratricope	91.91
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	91.74
2if4_A		338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	91.2
3mv2_B		310	Coatomer subunit epsilon; vesicular membrane coat	91.18
2if4_A		338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	91.0
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	90.29
2hr2_A		159	Hypothetical protein; alpha-alpha superhelix fold,	90.13
2kc7_A		99	BFR218_protein; tetratricopeptide repeat, all-alph	90.07
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	89.8
1klx_A		138	Cysteine rich protein B; structural genomics, heli	89.02
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	88.77
3ffl_A		167	Anaphase-promoting complex subunit 7; tetratricope	86.69
2kat_A		115	Uncharacterized protein; NESG, structure, structur	86.51
2kc7_A		99	BFR218_protein; tetratricopeptide repeat, all-alph	86.51
3mv2_B		310	Coatomer subunit epsilon; vesicular membrane coat	85.32
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	85.06
3ly7_A		372	Transcriptional activator CADC; alpha/beta domain,	84.47
3ffl_A		167	Anaphase-promoting complex subunit 7; tetratricope	83.12
1xi4_A		1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	82.79

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}	Back alignment and structure

Probab=99.48  E-value=4.4e-10  Score=111.92  Aligned_cols=336  Identities=13%  Similarity=0.010  Sum_probs=235.1

Q ss_pred             hhHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcc
Q 008745            2 EAVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSC   81 (555)
Q Consensus         2 ~~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~   81 (555)
                      +..+..|+.+|+.+...+++..|+.+++.+++..+ -.|...+.+...+|.+++ ...+.++|..+++++..+.+.++ .
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~-~   82 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIG-D   82 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTT-C
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcc-c
Confidence            44567889999999999999999999999998765 246667889999998776 57899999999999988877663 3


Q ss_pred             hhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCC----------------
Q 008745           82 FELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGD----------------  145 (555)
Q Consensus        82 ~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D----------------  145 (555)
                      ......+...++.+|...|....+...+.++++.....    +.........+.++.++...|+                
T Consensus        83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~  158 (406)
T 3sf4_A           83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE  158 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc----ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence            45567889999999999999988888889998876542    2334455667789999999999                


Q ss_pred             ----hHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHH
Q 008745          146 ----YQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNEL  221 (555)
Q Consensus       146 ----~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~  221 (555)
                          +..|++.++++..++...+++..........+.++...                                      
T Consensus       159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--------------------------------------  200 (406)
T 3sf4_A          159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL--------------------------------------  200 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc--------------------------------------
Confidence                99999999999998888877543322222222221111                                      


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhHHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHhcccC
Q 008745          222 LHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDS  301 (555)
Q Consensus       222 l~vfy~lrvc~y~~a~~~v~~ld~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~~~~~k~kqLQ~~lq~i~~~  301 (555)
                                     |+    .+.+++                                         .+++.++.... 
T Consensus       201 ---------------g~----~~~A~~-----------------------------------------~~~~al~~~~~-  219 (406)
T 3sf4_A          201 ---------------GN----FRDAVI-----------------------------------------AHEQRLLIAKE-  219 (406)
T ss_dssp             ---------------TB----HHHHHH-----------------------------------------HHHHHHHHHHH-
T ss_pred             ---------------cC----HHHHHH-----------------------------------------HHHHHHHHHHh-
Confidence                           11    112221                                         01111111000 


Q ss_pred             CCCCcCcCCcccccCcccccCcccccCCCCCccccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhc
Q 008745          302 SLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKL  381 (555)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl  381 (555)
                                         .                +.....+.++..-+......|.+++|.++++++++....    .
T Consensus       220 -------------------~----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~  260 (406)
T 3sf4_A          220 -------------------F----------------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ----L  260 (406)
T ss_dssp             -------------------T----------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----T
T ss_pred             -------------------c----------------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh----C
Confidence                               0                000112334444455556689999999999999987332    1


Q ss_pred             ccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHH
Q 008745          382 GITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAH  461 (555)
Q Consensus       382 ~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~  461 (555)
                      +   .         ..+.        ...+.+++.+....+++++|.+.+.+..+.....+..  .....+.+.+|.+..
T Consensus       261 ~---~---------~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~la~~~~  318 (406)
T 3sf4_A          261 K---D---------RAVE--------AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR--IGEGRACWSLGNAYT  318 (406)
T ss_dssp             T---C---------HHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHH
T ss_pred             c---C---------chHH--------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHH
Confidence            1   1         1111        1222345677788999999999999999998887653  245677888999999


Q ss_pred             HhCCHHHHHHHHHHHHhhcCC---hhHHHHHHHHHHHHHhhcCCcc
Q 008745          462 SVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFCIGDAE  504 (555)
Q Consensus       462 s~g~~~~A~~~F~~A~k~t~s---~~~~~~~~lnlAi~yL~~g~~~  504 (555)
                      ..|++++|...|..|++..+.   +.....+..+++.+|...|++.
T Consensus       319 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          319 ALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence            999999999999999877533   4455666777888888877753

PyMOL of 3sf4

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}	Back alignment and structure

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}	Back alignment and structure

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}	Back alignment and structure

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}	Back alignment and structure

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}	Back alignment and structure

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1	Back alignment and structure

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}	Back alignment and structure

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}	Back alignment and structure

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}	Back alignment and structure

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}	Back alignment and structure

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2	Back alignment and structure

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}	Back alignment and structure

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A	Back alignment and structure

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1	Back alignment and structure

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}	Back alignment and structure

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A	Back alignment and structure

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}	Back alignment and structure

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2	Back alignment and structure

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A	Back alignment and structure

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}	Back alignment and structure

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}	Back alignment and structure

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}	Back alignment and structure

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A	Back alignment and structure

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}	Back alignment and structure

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}	Back alignment and structure

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}	Back alignment and structure

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}	Back alignment and structure

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}	Back alignment and structure

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}	Back alignment and structure

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}	Back alignment and structure

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}	Back alignment and structure

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A	Back alignment and structure

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}	Back alignment and structure

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}	Back alignment and structure

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}	Back alignment and structure

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A	Back alignment and structure

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}	Back alignment and structure

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A	Back alignment and structure

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A	Back alignment and structure

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A	Back alignment and structure

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1	Back alignment and structure

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}	Back alignment and structure

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}	Back alignment and structure

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}	Back alignment and structure

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}	Back alignment and structure

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A	Back alignment and structure

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}	Back alignment and structure

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A	Back alignment and structure

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A	Back alignment and structure

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}	Back alignment and structure

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A	Back alignment and structure

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}	Back alignment and structure

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}	Back alignment and structure

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A	Back alignment and structure

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1	Back alignment and structure

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A	Back alignment and structure

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1	Back alignment and structure

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A	Back alignment and structure

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}	Back alignment and structure

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}	Back alignment and structure

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}	Back alignment and structure

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A	Back alignment and structure

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}	Back alignment and structure

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A	Back alignment and structure

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*	Back alignment and structure

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A	Back alignment and structure

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}	Back alignment and structure

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}	Back alignment and structure

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A	Back alignment and structure

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1	Back alignment and structure

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A	Back alignment and structure

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}	Back alignment and structure

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A	Back alignment and structure

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*	Back alignment and structure

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}	Back alignment and structure

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*	Back alignment and structure

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A	Back alignment and structure

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*	Back alignment and structure

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1	Back alignment and structure

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}	Back alignment and structure

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1	Back alignment and structure

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}	Back alignment and structure

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}	Back alignment and structure

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}	Back alignment and structure

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1	Back alignment and structure

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*	Back alignment and structure

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A	Back alignment and structure

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}	Back alignment and structure

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}	Back alignment and structure

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}	Back alignment and structure

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}	Back alignment and structure

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}	Back alignment and structure

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}	Back alignment and structure

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A	Back alignment and structure

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*	Back alignment and structure

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}	Back alignment and structure

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}	Back alignment and structure

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}	Back alignment and structure

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1	Back alignment and structure

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}	Back alignment and structure

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*	Back alignment and structure

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}	Back alignment and structure

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1	Back alignment and structure

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}	Back alignment and structure

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}	Back alignment and structure

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A	Back alignment and structure

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}	Back alignment and structure

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}	Back alignment and structure

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}	Back alignment and structure

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1	Back alignment and structure

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*	Back alignment and structure

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}	Back alignment and structure

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*	Back alignment and structure

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A	Back alignment and structure

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*	Back alignment and structure

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Back alignment and structure

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}	Back alignment and structure

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}	Back alignment and structure

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1	Back alignment and structure

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}	Back alignment and structure

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}	Back alignment and structure

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1	Back alignment and structure

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*	Back alignment and structure

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}	Back alignment and structure

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A	Back alignment and structure

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7	Back alignment and structure

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*	Back alignment and structure

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1	Back alignment and structure

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1	Back alignment and structure

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}	Back alignment and structure

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A	Back alignment and structure

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A	Back alignment and structure

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A	Back alignment and structure

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}	Back alignment and structure

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A	Back alignment and structure

Back alignment and structure

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}	Back alignment and structure

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}	Back alignment and structure

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1	Back alignment and structure

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}	Back alignment and structure

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}	Back alignment and structure

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8	Back alignment and structure

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A	Back alignment and structure

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A	Back alignment and structure

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7	Back alignment and structure

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A	Back alignment and structure

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*	Back alignment and structure

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*	Back alignment and structure

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}	Back alignment and structure

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}	Back alignment and structure

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1	Back alignment and structure

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2	Back alignment and structure

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A	Back alignment and structure

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A	Back alignment and structure

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A	Back alignment and structure

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7	Back alignment and structure

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3	Back alignment and structure

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A	Back alignment and structure

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2	Back alignment and structure

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A	Back alignment and structure

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7	Back alignment and structure

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}	Back alignment and structure

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}	Back alignment and structure

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A	Back alignment and structure

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A	Back alignment and structure

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3	Back alignment and structure

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A	Back alignment and structure

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}	Back alignment and structure

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B	Back alignment and structure

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*	Back alignment and structure

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8	Back alignment and structure

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*	Back alignment and structure

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}	Back alignment and structure

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}	Back alignment and structure

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}	Back alignment and structure

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*	Back alignment and structure

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A	Back alignment and structure

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}	Back alignment and structure

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		555
d1hz4a_		366	Transcription factor MalT domain III {Escherichia	98.96
d1w3ba_		388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.94
d1hz4a_		366	Transcription factor MalT domain III {Escherichia	98.69
d1w3ba_		388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.45
d1fcha_		323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.83
d1qqea_		290	Vesicular transport protein sec17 {Baker's yeast (	97.51
d1qqea_		290	Vesicular transport protein sec17 {Baker's yeast (	97.46
d1xnfa_		259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.0
d1elra_		128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.95
d1fcha_		323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.93
d1hh8a_		192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.86
d1hh8a_		192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.58
d2hr2a1		156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.5
d2hr2a1		156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.13
d2fbna1		153	Putative 70 kda peptidylprolyl isomerase PFL2275c	95.98
d1hxia_		112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.66
d1elwa_		117	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.62
d1hxia_		112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.58
d1xnfa_		259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	95.57
d1elra_		128	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.56
d1a17a_		159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	95.55
d1nzna_		122	Mitochondria fission protein Fis1 {Human (Homo sap	95.34
d1p5qa1		170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	95.28
d1a17a_		159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	95.24
d2c2la1		201	STIP1 homology and U box-containing protein 1, STU	95.22
d1ihga1		169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	95.18
d2c2la1		201	STIP1 homology and U box-containing protein 1, STU	95.0
d1kt1a1		168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	94.96
d1p5qa1		170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	94.04
d1nzna_		122	Mitochondria fission protein Fis1 {Human (Homo sap	93.59
d2h6fa1		315	Protein farnesyltransferase alpha-subunit {Human (	93.34
d2fbna1		153	Putative 70 kda peptidylprolyl isomerase PFL2275c	92.89
d2ff4a2		179	Probable regulatory protein EmbR, middle domain {M	92.31
d1kt1a1		168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	91.04
d1elwa_		117	Hop {Human (Homo sapiens) [TaxId: 9606]}	91.01
d1tjca_		95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	90.2
d2onda1		308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	88.74
d1zbpa1		264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	88.49
d1tjca_		95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	87.04
d2h6fa1		315	Protein farnesyltransferase alpha-subunit {Human (	86.13
d1ihga1		169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	84.51
d1zbpa1		264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	81.62
d1zu2a1		145	Mitochondrial import receptor subunit tom20-3 {Tha	80.07

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=1.6e-06  Score=80.56  Aligned_cols=308  Identities=11%  Similarity=0.030  Sum_probs=200.5

Q ss_pred             HhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHH
Q 008745           10 GLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTF   89 (555)
Q Consensus        10 ~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~   89 (555)
                      -.|+-....|++..|+++++.++...|.-+|...+.+...+|.+++ ...+.++|...++++..+....+. ......+.
T Consensus        17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~   94 (366)
T d1hz4a_          17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDV-WHYALWSL   94 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhcc-hHHHHHHH
Confidence            3588888999999999999999987765567777788888888776 678899999999999877665433 34566778


Q ss_pred             HHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHH
Q 008745           90 SLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQ  169 (555)
Q Consensus        90 sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~  169 (555)
                      ..++.+|...|....+...+.++++.....  ..+.....-.....++.++...|++..|...++.........+.....
T Consensus        95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  172 (366)
T d1hz4a_          95 IQQSEILFAQGFLQTAWETQEKAFQLINEQ--HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  172 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhc--ccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence            889999999998877777778888766532  122233344455678899999999999999999988877666543211


Q ss_pred             HHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHH
Q 008745          170 MFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKA  249 (555)
Q Consensus       170 v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~vfy~lrvc~y~~a~~~v~~ld~~~~~  249 (555)
                       ......+.....                                                     .+.    .+.+.  
T Consensus       173 -~~~~~~~~~~~~-----------------------------------------------------~~~----~~~a~--  192 (366)
T d1hz4a_         173 -QCLAMLIQCSLA-----------------------------------------------------RGD----LDNAR--  192 (366)
T ss_dssp             -HHHHHHHHHHHH-----------------------------------------------------HTC----HHHHH--
T ss_pred             -HHHHHHHHHHHh-----------------------------------------------------hhh----HHHHH--
Confidence             111111110000                                                     000    01111  


Q ss_pred             hHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHhcccCCCCCcCcCCcccccCcccccCcccccCC
Q 008745          250 DKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAP  329 (555)
Q Consensus       250 ~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~~~~~k~kqLQ~~lq~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  329 (555)
                                                             ....+.......                             
T Consensus       193 ---------------------------------------~~~~~a~~~~~~-----------------------------  204 (366)
T d1hz4a_         193 ---------------------------------------SQLNRLENLLGN-----------------------------  204 (366)
T ss_dssp             ---------------------------------------HHHHHHHHHHTT-----------------------------
T ss_pred             ---------------------------------------HHHHHHHHHHHH-----------------------------
Confidence                                                   000011111000                             


Q ss_pred             CCCccccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHH
Q 008745          330 SPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQ  409 (555)
Q Consensus       330 ~~l~f~WLPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~  409 (555)
                            ..+.....+.++...+......|.+++|..+++++++.          .+.  ..    ...+  ..+      
T Consensus       205 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----------~~~--~~----~~~~--~~~------  254 (366)
T d1hz4a_         205 ------GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP----------EFA--NN----HFLQ--GQW------  254 (366)
T ss_dssp             ------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC----------CCT--TC----GGGH--HHH------
T ss_pred             ------hcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh----------ccc--cc----hHHH--HHH------
Confidence                  00001122334444555666778889999887655432          111  00    1111  111      


Q ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh
Q 008745          410 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK  483 (555)
Q Consensus       410 lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~  483 (555)
                        .+++.+....+++++|.+.+.++.......+...  .....++.+|......|++++|...|..|+++++..
T Consensus       255 --~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~  324 (366)
T d1hz4a_         255 --RNIARAQILLGEFEPAEIVLEELNENARSLRLMS--DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT  324 (366)
T ss_dssp             --HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccCh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhc
Confidence              2236667888999999999999999888765432  456788999999999999999999999999877543

PyMOL of d1hz4a_

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}	Back information, alignment and structure

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}	Back information, alignment and structure

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}	Back information, alignment and structure

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}	Back information, alignment and structure

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}	Back information, alignment and structure

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}	Back information, alignment and structure

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}	Back information, alignment and structure

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}	Back information, alignment and structure

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure