Citrus Sinensis ID: 008769

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550----
Protein Sequence
MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNSFKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE
Secondary Structure (PSIPRED)
ccccccccEEEEEEEEEcccccccEEEEEEEEEccccccHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccEEEEEEEEEEEcccHHHHHHHHHccccccccccccEEEEEEEEcccEEEEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEEEEcccccEEEEEEEEEccccEEEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccHHHHHHHHHHHccHHHHHHHHcHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHcHHHHHHHHHHHHcHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEccEEEEEcccccccEEEEEEEEEEcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEccccEEEEEEEEEEcccHHHHHHHHHcHHHHHHHccccEEEEEEEccccEEEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEEEEEccccEEEEEEEEEEcccccEEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHcccccccccccHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHcccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHccHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mvdgdfkkfegkwsiksgtrsstttlsyevnviprlnfpaiFLERIIRSDLPVNLQALACRaersfgwnqkipmiknsfgelslpilaspsldfdgglpekgkaphgefnenivssnfgsvppsssdlnskwgvfgqvcrldrpcfvdevHLRRFDgllenggvhRCVVASITVKAPVSEVWNVMTAYEtlpeivpnLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFeqvegdfdsfqGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIyedlpsnlcaIRDYVekregdnslandsvettnhtqssddltqssdelgassssdnedlvdsetpnsfkqrprvpglqtNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYkhrkpkgywdnLENLEEEISRFQrswgmdpsfmpsrksfeRAGRYDIARALEKWGGLHEVSRLLSLklrhpnrrahiikdkkvdyvdpanlecegkipskpyvsqdTQKWAMKLkdldinwve
Flexible Loop (DISEMBL)
mvdgdfkkfegkwsiksgtrsstttlsyevnvipRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDgllenggvHRCVVASItvkapvseVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSLANDSVEttnhtqssddltqSSDELGassssdnedlvdsetpnsfkqrprvpglQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAItrmggfrrMASLMNLALAYKHRKPKGYWDNLENLEEEISRfqrswgmdpsFMPSRKSFERAGRYDIARALEKWGGLHEVSRLlslklrhpnrrahiikdkkvdyvDPANLecegkipskpyvsqdtqkWAMKLKDLDINWVE
Low Complexity Region (SEG)
MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIvssnfgsvppsssDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSLANDSVETTNHtqssddltqssdelgassssDNEDLVDSETPNSFKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE
Disordered region (IsUnstruct)
**********************TTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSFGELSLPILAS****************************************SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV**************************************************************QTNIEVLKAELLEFISKHGQEGFM******RKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSW**************RAGRYDIARALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINW**
Disordered Region (DISOPRED)
MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER*****************************************************************************************************RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY********************************************************************VLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGM**********FERAGRYDIARALEKWGGLHEVSRLLS******************************************QKWAMKLKDLDINWVE
Disordered Region (DISEMBL)
MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFG********LNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSLANDS*******************************************PRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE
Disordered Region (DISPRO)
****DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKI***********************************************************W*VFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD**************************************************PRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSLKL*********************************YVSQDTQKWAMKLKDLDINWVE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNSFKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	554
225438333	735	PREDICTED: uncharacterized protein LOC10	0.989	0.745	0.734	0.0
224083544	727	predicted protein [Populus trichocarpa]	0.983	0.749	0.736	0.0
255563831	722	conserved hypothetical protein [Ricinus	0.983	0.754	0.740	0.0
296082624	712	unnamed protein product [Vitis vinifera]	0.947	0.737	0.718	0.0
357520155	742	cyclase/dehydrase family protein [Medica	0.990	0.739	0.692	0.0
449520367	727	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.978	0.745	0.694	0.0
356512876	725	PREDICTED: uncharacterized protein LOC10	0.971	0.742	0.687	0.0
356527540	721	PREDICTED: uncharacterized protein LOC10	0.976	0.750	0.689	0.0
356518814	724	PREDICTED: uncharacterized protein LOC10	0.976	0.747	0.678	0.0
22326677	719	uncharacterized protein [Arabidopsis tha	0.962	0.741	0.675	0.0

>gi|225438333|ref|XP_002273364.1| PREDICTED: uncharacterized protein LOC100262883 [Vitis vinifera]

 Score =  837 bits (2163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/557 (73%), Positives = 471/557 (84%), Gaps = 9/557 (1%)

Query: 1   MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 60
           MVDGDFKKFEGKWS+K G RSSTT+LSYEVNVIPR NFPAIFLERIIRSDLPVNLQALAC
Sbjct: 185 MVDGDFKKFEGKWSLKYGKRSSTTSLSYEVNVIPRFNFPAIFLERIIRSDLPVNLQALAC 244

Query: 61  RAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGS 120
           R+E++F  NQKIP I++S G  S+  +A+P +D DG L  +  +P G F ++  SS+F  
Sbjct: 245 RSEKNFEGNQKIPFIESSLGTASIADVANPGIDLDGALSVEKLSP-GVFKKSHASSSFDP 303

Query: 121 VPPSSSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSE 180
           +  SSS+L+S WGVFG+VC+LDRPC VDEVHLRRFDGLLENGGVHRCVVAS+TVKAPV E
Sbjct: 304 LFQSSSELSSNWGVFGKVCKLDRPCMVDEVHLRRFDGLLENGGVHRCVVASMTVKAPVRE 363

Query: 181 VWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ 240
           VWNV+TAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHAR V+D+CEQ EQ
Sbjct: 364 VWNVLTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARAVLDLCEQLEQ 423

Query: 241 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSN 300
           EISF QVEGDFDSFQGKW+ EQLG+ HTLLKY+VESKM ++S LSEAIMEEVIYEDLPSN
Sbjct: 424 EISFVQVEGDFDSFQGKWILEQLGNQHTLLKYTVESKMHRDSFLSEAIMEEVIYEDLPSN 483

Query: 301 LCAIRDYVEKREGDNSLANDSVETTNHTQSSDD--LTQSSDELGASSSSDNEDLVDSETP 358
           LCAIRDY+EKRE  NSL     ET+++ + S++  ++ S+           +++ D   P
Sbjct: 484 LCAIRDYIEKREASNSL-----ETSDYVRYSEEQFISSSNGRDVDYHPKPADEVSDVSGP 538

Query: 359 NSFKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGF 418
           N  +QRPRVPGLQ NIEVLKAELL+FI +HGQEGFMPMRKQLRKHGRVD+EKAITRMGGF
Sbjct: 539 NPLRQRPRVPGLQRNIEVLKAELLKFILEHGQEGFMPMRKQLRKHGRVDIEKAITRMGGF 598

Query: 419 RRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDI 478
           RR+ASLMNL+LAYKHRKPKGYWDNLENL+EEI+RFQRSWGMDPS+MPSRK+FERAGRYDI
Sbjct: 599 RRIASLMNLSLAYKHRKPKGYWDNLENLKEEITRFQRSWGMDPSYMPSRKTFERAGRYDI 658

Query: 479 ARALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDKKVDYV-DPANLECEGKIPSKPYVSQD 537
           ARALEKWGGLHEVSRLLSLK+RHPNR+ ++ K K+ D+V  P  +  E +  SKPYV QD
Sbjct: 659 ARALEKWGGLHEVSRLLSLKVRHPNRQPNLTKHKRSDFVASPDMVVDEDRTTSKPYVPQD 718

Query: 538 TQKWAMKLKDLDINWVE 554
            QKW M L+ LDINWVE
Sbjct: 719 AQKWLMSLQHLDINWVE 735

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083544|ref|XP_002307063.1| predicted protein [Populus trichocarpa] gi|222856512|gb|EEE94059.1| predicted protein [Populus trichocarpa]

 Score =  834 bits (2154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/554 (73%), Positives = 460/554 (83%), Gaps = 9/554 (1%)

Query: 1   MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 60
           MVDGDFKKFEGKWS++SGTR  TTTLSYEVNV+PR NFPAIFLERII SDLPVNL+ALAC
Sbjct: 183 MVDGDFKKFEGKWSLRSGTRHGTTTLSYEVNVMPRYNFPAIFLERIIGSDLPVNLRALAC 242

Query: 61  RAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGS 120
           RAER F  NQK  + ++   E S+    SP +  DG   EK K    +  ++  SS FG 
Sbjct: 243 RAERDFEGNQKTGITES---ETSMTASTSPGMVLDGAFREKDKLSTEDLKQSYPSSTFGP 299

Query: 121 VPPSSSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSE 180
           + P S+DLN+ WGV G+ CRLDR C VDEVHLRR+DGLLENGGVHRCV ASITVKAPV E
Sbjct: 300 MLPPSNDLNNNWGVLGKACRLDRRCMVDEVHLRRYDGLLENGGVHRCVFASITVKAPVRE 359

Query: 181 VWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ 240
           VWNV+TAYE+LPE VPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVV+D+CE  EQ
Sbjct: 360 VWNVLTAYESLPEFVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVLDLCEHLEQ 419

Query: 241 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSN 300
           EISFEQVEGDFDSFQGKW+ EQLGSHHTLLKY+VESK  +++ LSEAIMEEVIYEDLPSN
Sbjct: 420 EISFEQVEGDFDSFQGKWILEQLGSHHTLLKYNVESKTHRDTFLSEAIMEEVIYEDLPSN 479

Query: 301 LCAIRDYVEKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNS 360
           LCAIRDY+EKRE     +N+S ET  H Q S +L  S  +     S   + + D   PNS
Sbjct: 480 LCAIRDYIEKRE-----SNNSSETEEHGQYSKELDSSRGDSYHEHSMAVQQVSDVSNPNS 534

Query: 361 FKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRR 420
            KQRPRVPGLQ +I+VLK+ELL+FIS+HGQEGFMPMRKQLR HGRVD+EKAITRMGGFRR
Sbjct: 535 LKQRPRVPGLQRDIDVLKSELLKFISEHGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRR 594

Query: 421 MASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIAR 480
           +A+LMNL+LAYKHRKPKGYWDNLENL+EEISRFQRSWGMD SFMPSRKSFERAGRYDIAR
Sbjct: 595 IATLMNLSLAYKHRKPKGYWDNLENLQEEISRFQRSWGMDLSFMPSRKSFERAGRYDIAR 654

Query: 481 ALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQK 540
           ALEKWGGLHEVSRLL+LK+RHPNR+A+ IKD+K+D V   + E E KIP+K YVSQDTQK
Sbjct: 655 ALEKWGGLHEVSRLLALKVRHPNRQANSIKDRKIDDVS-TDAEGEDKIPTKAYVSQDTQK 713

Query: 541 WAMKLKDLDINWVE 554
           W MK KDLDINWV+
Sbjct: 714 WLMKFKDLDINWVD 727

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563831|ref|XP_002522916.1| conserved hypothetical protein [Ricinus communis] gi|223537843|gb|EEF39459.1| conserved hypothetical protein [Ricinus communis]

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/554 (74%), Positives = 457/554 (82%), Gaps = 9/554 (1%)

Query: 1   MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 60
           MVDGDFKKF+GKWS+KSGTR+ TT LSYEVNVIPR NFPAIFLERIIRSDLP+NLQALA 
Sbjct: 178 MVDGDFKKFDGKWSLKSGTRAGTTMLSYEVNVIPRFNFPAIFLERIIRSDLPLNLQALAG 237

Query: 61  RAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGS 120
           RAER+F  NQK   I  S   +++     P L+  G   EK     G+ NE+  SS+FG 
Sbjct: 238 RAERTFEGNQKTS-IAESGKSMAISTFHGPGLN--GSSCEKRNMSAGDLNESYQSSHFGP 294

Query: 121 VPPSSSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSE 180
           VP SSSDLN+ WGVFG+VC LDRP   DEVHLRR+DGLLE+GGVHRCVVASITVKAPV E
Sbjct: 295 VPSSSSDLNTNWGVFGKVCSLDRPSIADEVHLRRYDGLLEDGGVHRCVVASITVKAPVRE 354

Query: 181 VWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ 240
           VW V+TAYE+LPEIVPNLAISKIL RENNKVRILQEGCKGLLYMVLHARVV+D+CE  EQ
Sbjct: 355 VWKVLTAYESLPEIVPNLAISKILLRENNKVRILQEGCKGLLYMVLHARVVLDLCEHLEQ 414

Query: 241 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSN 300
           EISFEQ EGDFDSFQGKWL EQLGSHHTLLKY+V SKM K+S LSEAIMEEVIYEDLPSN
Sbjct: 415 EISFEQAEGDFDSFQGKWLLEQLGSHHTLLKYTVNSKMHKDSFLSEAIMEEVIYEDLPSN 474

Query: 301 LCAIRDYVEKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNS 360
           +CAIRDY+EKRE   SL     E     Q S +L  S+ ++     +   D+VD   PNS
Sbjct: 475 MCAIRDYIEKREDKISL-----EMHLLGQYSKELESSNCDIDTKYGNATGDIVDLNNPNS 529

Query: 361 FKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRR 420
            +QRPRVPGLQ +IEVLK+ELL+FIS+HGQEGFMPMRKQLR HGRVD+EKAITRMGGFRR
Sbjct: 530 VRQRPRVPGLQRDIEVLKSELLKFISEHGQEGFMPMRKQLRMHGRVDIEKAITRMGGFRR 589

Query: 421 MASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIAR 480
           +ASLMNL+LAYK RKPKGYWDNLENL+EEI RFQ SWGMDPSFMPSRKSFERAGRYDIAR
Sbjct: 590 IASLMNLSLAYKRRKPKGYWDNLENLQEEIGRFQLSWGMDPSFMPSRKSFERAGRYDIAR 649

Query: 481 ALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQK 540
           ALEKWGGLHEVSRLL+LK+RHPNR+A++IKDKK+DY    N+E E  I SK YVSQDT+K
Sbjct: 650 ALEKWGGLHEVSRLLALKVRHPNRQANVIKDKKIDYTTSTNVEGEDGI-SKTYVSQDTEK 708

Query: 541 WAMKLKDLDINWVE 554
           W  KLKDLDINW E
Sbjct: 709 WLTKLKDLDINWGE 722

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082624|emb|CBI21629.3| unnamed protein product [Vitis vinifera]

 Score =  810 bits (2091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/557 (71%), Positives = 458/557 (82%), Gaps = 32/557 (5%)

Query: 1   MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 60
           MVDGDFKKFEGKWS+K G RSSTT+LSYEVNVIPR NFPAIFLERIIRSDLPVNLQALAC
Sbjct: 185 MVDGDFKKFEGKWSLKYGKRSSTTSLSYEVNVIPRFNFPAIFLERIIRSDLPVNLQALAC 244

Query: 61  RAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGS 120
           R+E++F  NQKIP I++S G  S+                         +++  SS+F  
Sbjct: 245 RSEKNFEGNQKIPFIESSLGTASIA------------------------DKSHASSSFDP 280

Query: 121 VPPSSSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSE 180
           +  SSS+L+S WGVFG+VC+LDRPC VDEVHLRRFDGLLENGGVHRCVVAS+TVKAPV E
Sbjct: 281 LFQSSSELSSNWGVFGKVCKLDRPCMVDEVHLRRFDGLLENGGVHRCVVASMTVKAPVRE 340

Query: 181 VWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ 240
           VWNV+TAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHAR V+D+CEQ EQ
Sbjct: 341 VWNVLTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARAVLDLCEQLEQ 400

Query: 241 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSN 300
           EISF QVEGDFDSFQGKW+ EQLG+ HTLLKY+VESKM ++S LSEAIMEEVIYEDLPSN
Sbjct: 401 EISFVQVEGDFDSFQGKWILEQLGNQHTLLKYTVESKMHRDSFLSEAIMEEVIYEDLPSN 460

Query: 301 LCAIRDYVEKREGDNSLANDSVETTNHTQSSDD--LTQSSDELGASSSSDNEDLVDSETP 358
           LCAIRDY+EKRE  NSL     ET+++ + S++  ++ S+           +++ D   P
Sbjct: 461 LCAIRDYIEKREASNSL-----ETSDYVRYSEEQFISSSNGRDVDYHPKPADEVSDVSGP 515

Query: 359 NSFKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGF 418
           N  +QRPRVPGLQ NIEVLKAELL+FI +HGQEGFMPMRKQLRKHGRVD+EKAITRMGGF
Sbjct: 516 NPLRQRPRVPGLQRNIEVLKAELLKFILEHGQEGFMPMRKQLRKHGRVDIEKAITRMGGF 575

Query: 419 RRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDI 478
           RR+ASLMNL+LAYKHRKPKGYWDNLENL+EEI+RFQRSWGMDPS+MPSRK+FERAGRYDI
Sbjct: 576 RRIASLMNLSLAYKHRKPKGYWDNLENLKEEITRFQRSWGMDPSYMPSRKTFERAGRYDI 635

Query: 479 ARALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDKKVDYV-DPANLECEGKIPSKPYVSQD 537
           ARALEKWGGLHEVSRLLSLK+RHPNR+ ++ K K+ D+V  P  +  E +  SKPYV QD
Sbjct: 636 ARALEKWGGLHEVSRLLSLKVRHPNRQPNLTKHKRSDFVASPDMVVDEDRTTSKPYVPQD 695

Query: 538 TQKWAMKLKDLDINWVE 554
            QKW M L+ LDINWVE
Sbjct: 696 AQKWLMSLQHLDINWVE 712

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520155|ref|XP_003630366.1| cyclase/dehydrase family protein [Medicago truncatula] gi|355524388|gb|AET04842.1| cyclase/dehydrase family protein [Medicago truncatula]

 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/556 (69%), Positives = 456/556 (82%), Gaps = 7/556 (1%)

Query: 1   MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 60
           MVDGDFKKFEGKWS+KSGTRSS+T LSYEVNVIPR NFPAIFLERI+RSDLPVNL+ALA 
Sbjct: 192 MVDGDFKKFEGKWSVKSGTRSSSTNLSYEVNVIPRFNFPAIFLERIVRSDLPVNLRALAY 251

Query: 61  RAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGS 120
           R ER+   NQK+P  ++   + SL +  S     +G L E  K   G+  E + +S  GS
Sbjct: 252 RVERNLLGNQKLPQPEDDLHKTSLVVNGSSVKKINGSLCETDKLAPGQDKEGLDTSISGS 311

Query: 121 VPPSSSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSE 180
           +P SSS+LNS WG+FG+VC LD+PC VDEVHLRRFDGLLENGGVHRCVVASITVKAPV +
Sbjct: 312 LPASSSELNSNWGIFGKVCSLDKPCVVDEVHLRRFDGLLENGGVHRCVVASITVKAPVRD 371

Query: 181 VWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ 240
           VWNVM++YETLPEIVPNLAISKILSR+NNKVRILQEGCKGLLYMVLHARVV+D+CEQ EQ
Sbjct: 372 VWNVMSSYETLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARVVLDLCEQLEQ 431

Query: 241 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSN 300
           EISFEQ EGDFDSF GKW FEQLG+HHTLLKYSV+SKM++++ LSEAIMEEVIYEDLPSN
Sbjct: 432 EISFEQAEGDFDSFHGKWTFEQLGNHHTLLKYSVDSKMRRDTFLSEAIMEEVIYEDLPSN 491

Query: 301 LCAIRDYVEKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNS 360
           LCAIRDYVE ++    L  +  E   ++     L+ S D+  +SS+   +D+ D    +S
Sbjct: 492 LCAIRDYVENQKASQFL--EVCEQNTNSGQQIILSGSGDDNNSSSA---DDISDCNVQSS 546

Query: 361 FKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRR 420
             QR RVPGLQ +IEVLK+ELL+F++++GQEGFMPMRKQLR HGRVD+EKAITRMGGFR+
Sbjct: 547 SNQRSRVPGLQRDIEVLKSELLKFVAEYGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRK 606

Query: 421 MASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIAR 480
           +A++MNL+LAYK+RKPKGYWDNLENL++EISRFQR WGMDPSFMPSRKSFER GR+DIAR
Sbjct: 607 IATIMNLSLAYKYRKPKGYWDNLENLQDEISRFQRCWGMDPSFMPSRKSFERVGRFDIAR 666

Query: 481 ALEKWGGLHEVSRLLSLKLRHPNRRA--HIIKDKKVDYVDPANLECEGKIPSKPYVSQDT 538
           ALEKWGGLHEVSRLLSLK R    R   ++ KDKK D+ + A+++ E    S+PY+SQDT
Sbjct: 667 ALEKWGGLHEVSRLLSLKARRKRTRQDNNLGKDKKNDHRESADVDSEINAASRPYISQDT 726

Query: 539 QKWAMKLKDLDINWVE 554
            KW  +LK+LDINWVE
Sbjct: 727 HKWHTELKELDINWVE 742

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520367|ref|XP_004167205.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101212159 [Cucumis sativus]

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/554 (69%), Positives = 442/554 (79%), Gaps = 12/554 (2%)

Query: 1   MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 60
           MVDGDFKKFEGKWSI +GTRSS T LSYEVNVIPR NFPAI LE IIRSDLPVNL+ALA 
Sbjct: 186 MVDGDFKKFEGKWSINAGTRSSPTILSYEVNVIPRFNFPAILLEXIIRSDLPVNLRALAF 245

Query: 61  RAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGS 120
           RAE      Q++  IK+S   +    L   +   D  + E  +  +        +SN GS
Sbjct: 246 RAEEKSEGGQRVGNIKDSKDVVLSNTLNGATCVKDEIVQENSRGGNS-------NSNLGS 298

Query: 121 VPPSSSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSE 180
           VPP S++LN+ WGVFG+VCRLD+ C VDEVHLRRFDGLLENGGVHRCVVASITVKAPV E
Sbjct: 299 VPPLSNELNTNWGVFGKVCRLDKRCMVDEVHLRRFDGLLENGGVHRCVVASITVKAPVRE 358

Query: 181 VWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ 240
           VWNV+TAYE+LPE+VPNLAISKILSRE+NKVRILQEGCKGLLYMVLHARVV+D+CEQ EQ
Sbjct: 359 VWNVLTAYESLPEVVPNLAISKILSRESNKVRILQEGCKGLLYMVLHARVVLDLCEQLEQ 418

Query: 241 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSN 300
           EISFEQVEGDFDS  GKW FEQLGSHHTLLKYSVES+M K++ LSEA+MEEV+YEDLPSN
Sbjct: 419 EISFEQVEGDFDSLSGKWHFEQLGSHHTLLKYSVESRMHKDTFLSEALMEEVVYEDLPSN 478

Query: 301 LCAIRDYVEKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNS 360
           LCAIRD +EKR     +  +S E  +   S +      +      ++  E + D     S
Sbjct: 479 LCAIRDSIEKR-----VLKNSFEALDQGDSEEKSVSRRNNQSNGYTTTAEGVSDINGRAS 533

Query: 361 FKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRR 420
           F+ RP+VPGLQ +IEVLKAE+L+FIS+HGQEGFMPMRKQLR HGRVD+EKAITRMGGFRR
Sbjct: 534 FRPRPKVPGLQRDIEVLKAEVLKFISEHGQEGFMPMRKQLRMHGRVDIEKAITRMGGFRR 593

Query: 421 MASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIAR 480
           +ASLMNL+LAYKHRKPKGYWD  +NL+EEI+RFQ+SWGMDPS+MPSRKSFERAGRYDIAR
Sbjct: 594 IASLMNLSLAYKHRKPKGYWDKFDNLQEEINRFQKSWGMDPSYMPSRKSFERAGRYDIAR 653

Query: 481 ALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQK 540
           ALEKWGGLHEVSRLLSLK+RHPNR+    KD+K DYV   + + E K PSKPY+SQDT+K
Sbjct: 654 ALEKWGGLHEVSRLLSLKVRHPNRQPSFAKDRKSDYVVVNDFDGESKAPSKPYISQDTEK 713

Query: 541 WAMKLKDLDINWVE 554
           W   LK LDINWVE
Sbjct: 714 WLTGLKYLDINWVE 727

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512876|ref|XP_003525141.1| PREDICTED: uncharacterized protein LOC100797103 [Glycine max]

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/560 (68%), Positives = 444/560 (79%), Gaps = 22/560 (3%)

Query: 1   MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 60
           MVDGDFKKFEGKWS+KSGTRSS+T LSYEVNVIPR NFPAIFLERIIRSDLPVNL+ALA 
Sbjct: 182 MVDGDFKKFEGKWSVKSGTRSSSTNLSYEVNVIPRFNFPAIFLERIIRSDLPVNLRALAY 241

Query: 61  RAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGS 120
           R ER+   NQK+ + +N   + S  I  S +   +  L E          E +VSS  G+
Sbjct: 242 RVERNISGNQKLSLPENHLDKTSSDIYESSAQKINSALCEN--------REYLVSSIPGT 293

Query: 121 VPPSSSDLN-SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVS 179
           +P  SS++N + WG FG+ CRLDRPC VDE+HLRRFDGLLENGGVHRCV A+ITVKA V 
Sbjct: 294 LPMPSSEVNINNWGAFGKTCRLDRPCVVDEIHLRRFDGLLENGGVHRCVFATITVKASVR 353

Query: 180 EVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHE 239
           +VWNVM++YETLPEIVPNLAISKILSR+NNKVRILQEGCKGLLYMVLHARVV+D+CE  E
Sbjct: 354 DVWNVMSSYETLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARVVLDLCEYLE 413

Query: 240 QEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS 299
           QEISFEQVEGDFDSF GKW FEQLG+HHTLLKYSVESKM+K++ LSEAIMEEVIYEDLPS
Sbjct: 414 QEISFEQVEGDFDSFHGKWTFEQLGNHHTLLKYSVESKMRKDTFLSEAIMEEVIYEDLPS 473

Query: 300 NLCAIRDYVEKREGDNSLANDSVETTNHTQSSDDLTQSSDELG---ASSSSDNEDLVDSE 356
           NLCAIRDY+E R   N             + + DL Q +   G     S    EDL D  
Sbjct: 474 NLCAIRDYIENRTASNMF--------EACKQNTDLGQQTVPSGFEDDDSYCSAEDLFDCN 525

Query: 357 TPNSFKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMG 416
             +S +QRPRVPGLQ +IEVLK+ELL+FI++HGQEGFMPMRKQLR HGRVD+EKAI RMG
Sbjct: 526 AQSSSQQRPRVPGLQRDIEVLKSELLKFIAEHGQEGFMPMRKQLRLHGRVDIEKAINRMG 585

Query: 417 GFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRY 476
           GFR++A++MNL+LAYKHRKPKGYWDNLENL  EISRFQRSWGMDPSFMPSR+SFERAGR+
Sbjct: 586 GFRKIATIMNLSLAYKHRKPKGYWDNLENLHYEISRFQRSWGMDPSFMPSRRSFERAGRF 645

Query: 477 DIARALEKWGGLHEVSRLLSLKLRHP-NRRAHIIKDKKV-DYVDPANLECEGKIPSKPYV 534
           DIARALEKWGGL +VSRLLSLK+R   +R+ ++ KDKKV D V   +++ E K PS+P V
Sbjct: 646 DIARALEKWGGLRQVSRLLSLKVRRQRSRQDNLAKDKKVDDDVASPDVDSEIKTPSRPTV 705

Query: 535 SQDTQKWAMKLKDLDINWVE 554
           SQD Q W  +LK LDINWVE
Sbjct: 706 SQDPQNWLTELKQLDINWVE 725

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527540|ref|XP_003532367.1| PREDICTED: uncharacterized protein LOC100785172 [Glycine max]

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/557 (68%), Positives = 446/557 (80%), Gaps = 16/557 (2%)

Query: 1   MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 60
           MVDGDFKKFEGKWS+KSGTRSS+T LSYEVNVIPR NFPAIFLERII+SDLPVNLQALA 
Sbjct: 178 MVDGDFKKFEGKWSVKSGTRSSSTNLSYEVNVIPRFNFPAIFLERIIKSDLPVNLQALAY 237

Query: 61  RAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGS 120
           R ER+   NQK+ + +N   + S  I  S +   +  L E          E++V+S  G+
Sbjct: 238 RVERNISGNQKLSLPENHLDKTSSDINESSAQKINSALCEN--------KEDLVNSIPGT 289

Query: 121 VPPSSSDLN-SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVS 179
           +P  SS++N + WG FG+ CRLDRPC VDE+HLRRFDGLLENGGVHRCV ASITVKAPV 
Sbjct: 290 LPMPSSEVNINNWGAFGKSCRLDRPCMVDEIHLRRFDGLLENGGVHRCVFASITVKAPVR 349

Query: 180 EVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHE 239
           +VW VM++YE+LPEIVPNLAISKILSR+NNKVRILQEGCKGLLYMVLHARVV+D+CE  E
Sbjct: 350 DVWTVMSSYESLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARVVLDLCEYLE 409

Query: 240 QEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS 299
           QEISFEQVEGDFDSFQGKW FEQLG+HHTLLKYS+ESKM+K++ LSEAIMEEVIYEDLPS
Sbjct: 410 QEISFEQVEGDFDSFQGKWTFEQLGNHHTLLKYSLESKMRKDTFLSEAIMEEVIYEDLPS 469

Query: 300 NLCAIRDYVEKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPN 359
           NLCAIRDY+E     N  A++ +E      +S   T  S      S    EDL D    +
Sbjct: 470 NLCAIRDYIE-----NKTASNILEACKQNTNSGQQTVPSGFEDDDSYCSAEDLSDCNAQS 524

Query: 360 SFKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFR 419
           S +QRPRVPGLQ +IEVLK+ELL+FI++HGQEGFMPMRKQLR HGRVD+EKAI R GGFR
Sbjct: 525 SSQQRPRVPGLQRDIEVLKSELLKFIAEHGQEGFMPMRKQLRLHGRVDIEKAINRKGGFR 584

Query: 420 RMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIA 479
           ++A++MNL+LAYKHRKPKGYWDNLENL  EISRFQRSWGMDPSFMPSR+SFERAGR+DIA
Sbjct: 585 KIATIMNLSLAYKHRKPKGYWDNLENLHYEISRFQRSWGMDPSFMPSRRSFERAGRFDIA 644

Query: 480 RALEKWGGLHEVSRLLSLKLRHP-NRRAHIIKDKKV-DYVDPANLECEGKIPSKPYVSQD 537
           RALEKWGGL +VSRLLSLK+R   +R+  + KDKKV D V   +++ E K PS+P VSQD
Sbjct: 645 RALEKWGGLRQVSRLLSLKVRRQRSRQGKLAKDKKVDDDVASPDVDREIKTPSRPTVSQD 704

Query: 538 TQKWAMKLKDLDINWVE 554
            QKW  +LK LDINWVE
Sbjct: 705 PQKWLTELKQLDINWVE 721

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518814|ref|XP_003528072.1| PREDICTED: uncharacterized protein LOC100777483 [Glycine max]

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/566 (67%), Positives = 448/566 (79%), Gaps = 25/566 (4%)

Query: 1   MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 60
           MVDGDFKKF+GKWS+KSGTRSST  LSYEVNVIPR NFPAIFLERIIRSDLPVNL+ALA 
Sbjct: 172 MVDGDFKKFDGKWSVKSGTRSSTAILSYEVNVIPRFNFPAIFLERIIRSDLPVNLRALAY 231

Query: 61  RAERSFGWNQKIPMIKNSFGELSLPI-----------LASPSLDFDGGLPEKGKAPHGEF 109
           RAER+F   QK+P+ +N   +  + I           L+      +G L E  K P  E 
Sbjct: 232 RAERNFVGYQKLPVSENHLHKTYVAINGSSVKKINGALSESFKKMNGALCESDKLPPAEN 291

Query: 110 NENIVSSNFGSVPPSSSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVV 169
            + I +S  GS+  SSS++ S WGVFG+VCRLDRP  VDEVHLRRFDGLLENGGVHRCVV
Sbjct: 292 KKEIATSVSGSMLTSSSEVRSNWGVFGKVCRLDRPRMVDEVHLRRFDGLLENGGVHRCVV 351

Query: 170 ASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHAR 229
           ASITVKA V EVWN++TAYETLP+IVPNLAISK++SR+NNKVRILQEGCKGLLYMVLHAR
Sbjct: 352 ASITVKAHVCEVWNILTAYETLPKIVPNLAISKVVSRDNNKVRILQEGCKGLLYMVLHAR 411

Query: 230 VVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIM 289
           VV+D+CE  EQEISFEQVEGDFDSF+GKW+FEQLG+HHTLLKYSVESKM+K++ LSEAIM
Sbjct: 412 VVLDLCEYLEQEISFEQVEGDFDSFRGKWIFEQLGNHHTLLKYSVESKMRKDTFLSEAIM 471

Query: 290 EEVIYEDLPSNLCAIRDYVEKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSSSDN 349
           EEVIYEDLPSNL AIRDY+E     N  A+   E      +S     SS  L   +S   
Sbjct: 472 EEVIYEDLPSNLSAIRDYIE-----NMNASKYSEVCEQNMNSGQQILSSGYLKDDNSGSA 526

Query: 350 EDLVDSETPNSFKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVE 409
           E++ + +   S +QR +VPGLQ NI+VL++ELL+FI++HGQEGFMPMRKQLR HGRVD+E
Sbjct: 527 EEVPNCDVQCSSQQRSKVPGLQRNIKVLESELLKFIAEHGQEGFMPMRKQLRLHGRVDIE 586

Query: 410 KAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKS 469
           KAITRMGGFR++A+++NL+LAYKHRKPKGYWDNLENL+EEISRFQR WG+DPSFMPSRKS
Sbjct: 587 KAITRMGGFRKIATILNLSLAYKHRKPKGYWDNLENLQEEISRFQRGWGIDPSFMPSRKS 646

Query: 470 FERAGRYDIARALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDKKV-DYVDPANLECEGKI 528
           FERAGRYDIARALEKWGGLHEVSRLLSLK+R  +R+ ++ KDK+  D+ D      E K 
Sbjct: 647 FERAGRYDIARALEKWGGLHEVSRLLSLKVRQRSRQDNLAKDKRSGDHTDS-----EMKT 701

Query: 529 PSKPYVSQDTQKWAMKLKDLDINWVE 554
           P    +SQDTQKW  KLK LDINW E
Sbjct: 702 PC---ISQDTQKWLTKLKHLDINWFE 724

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22326677|ref|NP_680157.1| uncharacterized protein [Arabidopsis thaliana] gi|13548330|emb|CAC35877.1| putative protein [Arabidopsis thaliana] gi|26450803|dbj|BAC42510.1| unknown protein [Arabidopsis thaliana] gi|29029030|gb|AAO64894.1| At5g08720 [Arabidopsis thaliana] gi|332003958|gb|AED91341.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/558 (67%), Positives = 441/558 (79%), Gaps = 25/558 (4%)

Query: 1   MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 60
           MVDGDFKKFEGKWS+KSG RS  T LSYEVNVIPR NFPAIFLERIIRSDLPVNL+A+A 
Sbjct: 182 MVDGDFKKFEGKWSVKSGIRSVGTVLSYEVNVIPRFNFPAIFLERIIRSDLPVNLRAVAR 241

Query: 61  RAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGS 120
           +AE+ +    K  +I++  G +S     S  ++FD    E+            V+S+ GS
Sbjct: 242 QAEKIYKDCGKPSIIEDLLGIISSQPAPSNGIEFDSLATERS-----------VASSVGS 290

Query: 121 VPPSSSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSE 180
           +   S++LN+ WGV+G+ C+LD+PC VDEVHLRRFDGLLENGGVHRC VASITVKAPV E
Sbjct: 291 LA-HSNELNNNWGVYGKACKLDKPCTVDEVHLRRFDGLLENGGVHRCAVASITVKAPVCE 349

Query: 181 VWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ 240
           VW V+T+YE+LPEIVPNLAISKILSR+NNKVRILQEGCKGLLYMVLHAR V+D+ E  EQ
Sbjct: 350 VWKVLTSYESLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARAVLDLHEIREQ 409

Query: 241 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSN 300
           EI FEQVEGDFDS +GKW+FEQLGSHHTLLKY+VESKM+K+S LSEAIMEEVIYEDLPSN
Sbjct: 410 EIRFEQVEGDFDSLEGKWIFEQLGSHHTLLKYTVESKMRKDSFLSEAIMEEVIYEDLPSN 469

Query: 301 LCAIRDYVEKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNS 360
           LCAIRDY+EKR G+ S  +  +ET    Q S++   SS      +  +N+D  D      
Sbjct: 470 LCAIRDYIEKR-GEKSSESCKLET---CQVSEETCSSSRAKSVETVYNNDDGSDQT---- 521

Query: 361 FKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRR 420
            KQR R+PGLQ +IEVLK+E+L+FIS+HGQEGFMPMRKQLR HGRVD+EKAITRMGGFRR
Sbjct: 522 -KQRRRIPGLQRDIEVLKSEILKFISEHGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRR 580

Query: 421 MASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIAR 480
           +A +MNL+LAYKHRKPKGYWDNLENL+EEI RFQ+SWGMDPSFMPSRKSFERAGRYDIAR
Sbjct: 581 IALMMNLSLAYKHRKPKGYWDNLENLQEEIGRFQQSWGMDPSFMPSRKSFERAGRYDIAR 640

Query: 481 ALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDKKVDYV----DPANLECEGKIPSKPYVSQ 536
           ALEKWGGLHEVSRLL+L +RHPNR+ +  KD     +      A+L       +KPYVSQ
Sbjct: 641 ALEKWGGLHEVSRLLALNVRHPNRQLNSRKDNGNTILRTESTEADLNSTVNKNNKPYVSQ 700

Query: 537 DTQKWAMKLKDLDINWVE 554
           DT+KW   LKDLDINWV+
Sbjct: 701 DTEKWLYNLKDLDINWVQ 718

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	554
TAIR|locus:504956340	719	AT5G08720 "AT5G08720" [Arabido	0.960	0.739	0.661	1.6e-189
TAIR|locus:2133442	288	AT4G01650 "AT4G01650" [Arabido	0.182	0.350	0.383	9.7e-13

TAIR|locus:504956340 AT5G08720 "AT5G08720" [Arabidopsis thaliana (taxid:3702)]

 Score = 1837 (651.7 bits), Expect = 1.6e-189, P = 1.6e-189
 Identities = 370/559 (66%), Positives = 430/559 (76%)

Query:     1 MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 60
             MVDGDFKKFEGKWS+KSG RS  T LSYEVNVIPR NFPAIFLERIIRSDLPVNL+A+A 
Sbjct:   182 MVDGDFKKFEGKWSVKSGIRSVGTVLSYEVNVIPRFNFPAIFLERIIRSDLPVNLRAVAR 241

Query:    61 RAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIXXXXXXX 120
             +AE+ +    K  +I++  G +S     S  ++FD    E+  A                
Sbjct:   242 QAEKIYKDCGKPSIIEDLLGIISSQPAPSNGIEFDSLATERSVA------------SSVG 289

Query:   121 XXXXXXDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSE 180
                   +LN+ WGV+G+ C+LD+PC VDEVHLRRFDGLLENGGVHRC VASITVKAPV E
Sbjct:   290 SLAHSNELNNNWGVYGKACKLDKPCTVDEVHLRRFDGLLENGGVHRCAVASITVKAPVCE 349

Query:   181 VWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ 240
             VW V+T+YE+LPEIVPNLAISKILSR+NNKVRILQEGCKGLLYMVLHAR V+D+ E  EQ
Sbjct:   350 VWKVLTSYESLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARAVLDLHEIREQ 409

Query:   241 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSN 300
             EI FEQVEGDFDS +GKW+FEQLGSHHTLLKY+VESKM+K+S LSEAIMEEVIYEDLPSN
Sbjct:   410 EIRFEQVEGDFDSLEGKWIFEQLGSHHTLLKYTVESKMRKDSFLSEAIMEEVIYEDLPSN 469

Query:   301 LCAIRDYVEKREGDNSLANDSVETTNHXXXXXXXXXXXXXXXXXXXXDNEDLVDSETPNS 360
             LCAIRDY+EKR G+ S  +  +ET                       +N+D  D +T   
Sbjct:   470 LCAIRDYIEKR-GEKSSESCKLETCQ---VSEETCSSSRAKSVETVYNNDDGSD-QT--- 521

Query:   361 FKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRR 420
              KQR R+PGLQ +IEVLK+E+L+FIS+HGQEGFMPMRKQLR HGRVD+EKAITRMGGFRR
Sbjct:   522 -KQRRRIPGLQRDIEVLKSEILKFISEHGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRR 580

Query:   421 MASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIAR 480
             +A +MNL+LAYKHRKPKGYWDNLENL+EEI RFQ+SWGMDPSFMPSRKSFERAGRYDIAR
Sbjct:   581 IALMMNLSLAYKHRKPKGYWDNLENLQEEIGRFQQSWGMDPSFMPSRKSFERAGRYDIAR 640

Query:   481 ALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDK-----KVDYVDPANLECEGKIPSKPYVS 535
             ALEKWGGLHEVSRLL+L +RHPNR+ +  KD      + +  + A+L       +KPYVS
Sbjct:   641 ALEKWGGLHEVSRLLALNVRHPNRQLNSRKDNGNTILRTESTE-ADLNSTVNKNNKPYVS 699

Query:   536 QDTQKWAMKLKDLDINWVE 554
             QDT+KW   LKDLDINWV+
Sbjct:   700 QDTEKWLYNLKDLDINWVQ 718

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2133442 AT4G01650 "AT4G01650" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 9.7e-13, P = 9.7e-13
 Identities = 43/112 (38%), Positives = 68/112 (60%)

Query:   166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGL-LYM 224
             R + + I ++A +  VW+V+T YE L + +P L +S+++ +E N+VR+ Q G + L L +
Sbjct:   115 RRIRSKIGMEASLDSVWSVLTDYEKLSDFIPGLVVSELVEKEGNRVRLFQMGQQNLALGL 174

Query:   225 VLHARVVMDICEQ------H--EQEISFEQVEGDFDSFQGKWLFEQL--GSH 266
               +A+ V+D  E+      H   +EI F+ VEGDF  F+GKW  EQL  G H
Sbjct:   175 KFNAKAVLDCYEKELEVLPHGRRREIDFKMVEGDFQLFEGKWSIEQLDKGIH 226


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.407    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      554       521   0.00090  119 3  11 22  0.40    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  325 KB (2164 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  42.45u 0.13s 42.58t   Elapsed:  00:00:02
  Total cpu time:  42.45u 0.13s 42.58t   Elapsed:  00:00:02
  Start:  Fri May 10 21:03:11 2013   End:  Fri May 10 21:03:13 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	554
cd08866	144	cd08866, SRPBCC_11, Ligand-binding SRPBCC domain o	5e-52
pfam03364	125	pfam03364, Polyketide_cyc, Polyketide cyclase / de	2e-16
cd08866	144	cd08866, SRPBCC_11, Ligand-binding SRPBCC domain o	3e-16
cd07812	141	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/Cox	8e-08
cd08861	142	cd08861, OtcD1_ARO-CYC_like, N-terminal and C-term	5e-06
pfam03364	125	pfam03364, Polyketide_cyc, Polyketide cyclase / de	6e-06
cd07821	140	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance	0.004

>gnl|CDD|176875 cd08866, SRPBCC_11, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

 Score =  173 bits (442), Expect = 5e-52
 Identities = 63/146 (43%), Positives = 87/146 (59%), Gaps = 5/146 (3%)

Query: 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 227
           VVA + V AP   VW V+T Y+ L E +PNLA S++L R  N+V + Q G +G+L+    
Sbjct: 1   VVARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFFKFE 60

Query: 228 ARVVMDICEQHE--QEISFEQVEGDFDSFQGKWLFEQLGS-HHTLLKYSVESKMQKNSLL 284
           ARVV+++ E+ E  +E+ FE VEGDF  F+G W  E L     TLL Y VE K    +  
Sbjct: 61  ARVVLELREREEFPRELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAP- 119

Query: 285 SEAIMEEVIYEDLPSNLCAIRDYVEK 310
              ++E V+ +DLP+NL AIR   E 
Sbjct: 120 -VFLVEFVLRQDLPTNLLAIRAEAES 144

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. Length = 144

>gnl|CDD|217515 pfam03364, Polyketide_cyc, Polyketide cyclase / dehydrase and lipid transport

 Score = 75.2 bits (185), Expect = 2e-16
 Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 7/132 (5%)

Query: 174 VKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMD 233
           V AP  +VW ++T  E  PE +P     ++L R+ +          G L     ARV + 
Sbjct: 1   VPAPAEQVWALVTDVERYPEFLPWCKSVEVLDRDGSLADW--RVAFGGLRRSFTARVTLQ 58

Query: 234 ICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVI 293
             E+    I    V+GDF   +G W FE  G   T +K ++E   +  S L  A++  V 
Sbjct: 59  PPER----IEMVLVDGDFKRLEGSWRFEPGGP-GTRVKVTLELDFEFASPLPGALLGFVF 113

Query: 294 YEDLPSNLCAIR 305
              L + L A R
Sbjct: 114 RRVLRTLLEAFR 125

This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. The family also includes proteins which are involved in the binding/transport of lipids. Length = 125

>gnl|CDD|176875 cd08866, SRPBCC_11, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

 Score = 75.3 bits (186), Expect = 3e-16
 Identities = 28/64 (43%), Positives = 37/64 (57%)

Query: 1   MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 60
           MV+GDFK+FEG W ++       T L+YEV V P    P   +E ++R DLP NL A+  
Sbjct: 81  MVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRA 140

Query: 61  RAER 64
            AE 
Sbjct: 141 EAES 144

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. Length = 144

>gnl|CDD|176854 cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

 Score = 51.2 bits (122), Expect = 8e-08
 Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 5/110 (4%)

Query: 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV-RILQEGCKGLLYMVL 226
           V ASI + AP   VW++++  E  PE  P L   ++L      V      G KG   + L
Sbjct: 1   VEASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGRRLTL 60

Query: 227 HARVVMDICEQHEQEISFEQVEGDF-DSFQGKWLFEQLGSHHTLLKYSVE 275
            + V         +   F    G       G+W  E  G   T + Y+VE
Sbjct: 61  TSEVTEVD---PPRPGRFRVTGGGGGVDGTGEWRLEPEGDGGTRVTYTVE 107

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. Length = 141

>gnl|CDD|176870 cd08861, OtcD1_ARO-CYC_like, N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 21/152 (13%)

Query: 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKG-LLYMV- 225
           V  S+TV AP  +V++++   E  PE +P +            V  L+       L M  
Sbjct: 1   VEHSVTVAAPAEDVYDLLADAERWPEFLPTV-----------HVERLELDGGVERLRMWA 49

Query: 226 ------LHARVVMDICEQHEQEISFEQVE--GDFDSFQGKWLFEQLGSHHTLLKYSVESK 277
                 +H      + +   + I F Q E      S  G+W FE LG   T +    +  
Sbjct: 50  TAFDGSVHTWTSRRVLDPEGRRIVFRQEEPPPPVASMSGEWRFEPLGGGGTRVTLRHDFT 109

Query: 278 MQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 309
           +  +S  +   +   +  +  + L A+R   E
Sbjct: 110 LGIDSPEAVPWIRRALDRNSRAELAALRAAAE 141

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this gene results in the production of novel polyketides having shorter chain lengths (by up to 10 carbons) than OTC. Monodomain ARO/CYCs have a single ARO/CYC domain, and are often associated with C9-C14 first ring cyclizations, these latter domains belong to a different subfamily in the SRPBCC superfamily. Length = 142

>gnl|CDD|217515 pfam03364, Polyketide_cyc, Polyketide cyclase / dehydrase and lipid transport

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 17/58 (29%), Positives = 26/58 (44%)

Query: 2   VDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALA 59
           VDGDFK+ EG W  + G   +   ++ E++       P   L  + R  L   L+A  
Sbjct: 68  VDGDFKRLEGSWRFEPGGPGTRVKVTLELDFEFASPLPGALLGFVFRRVLRTLLEAFR 125

This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. The family also includes proteins which are involved in the binding/transport of lipids. Length = 125

>gnl|CDD|176863 cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 12/133 (9%)

Query: 167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVL 226
            V  S+T+ AP  +VW +++ +  L +  P +A  + L      V     G    + +  
Sbjct: 2   KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCE-LEGGGPGV-----GAVRTVTLKD 55

Query: 227 HARVV--MDICEQHEQEISFEQVEGD--FDSFQGKWLFEQLGSHHTLLKYS--VESKMQK 280
              V   +   +  E+  S+  VEG     ++         G   T + ++   +     
Sbjct: 56  GGTVRERLLALDDAERRYSYRIVEGPLPVKNYVATIRVTPEGDGGTRVTWTAEFDPPEGL 115

Query: 281 NSLLSEAIMEEVI 293
              L+ A +  V 
Sbjct: 116 TDELARAFLTGVY 128

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol. Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	554
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	99.91
PRK10724	158	hypothetical protein; Provisional	99.86
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	99.86
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	99.79
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	99.77
PF03364	130	Polyketide_cyc: Polyketide cyclase / dehydrase and	99.76
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	99.74
COG2867	146	Oligoketide cyclase/lipid transport protein [Lipid	99.73
cd07817	139	SRPBCC_8 Ligand-binding SRPBCC domain of an unchar	99.64
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	99.63
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	99.58
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	99.57
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	99.56
cd07818	150	SRPBCC_1 Ligand-binding SRPBCC domain of an unchar	99.54
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	99.54
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	99.51
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	99.47
cd08906	209	START_STARD3-like Cholesterol-binding START domain	99.47
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	99.43
cd08877	215	START_2 Uncharacterized subgroup of the steroidoge	99.37
cd08905	209	START_STARD1-like Cholesterol-binding START domain	99.37
cd08874	205	START_STARD9-like C-terminal START domain of mamma	99.35
cd07820	137	SRPBCC_3 Ligand-binding SRPBCC domain of an unchar	99.34
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	99.33
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	99.32
cd07814	139	SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-	99.32
cd07812	141	SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR	99.31
cd08871	222	START_STARD10-like Lipid-binding START domain of m	99.3
cd08911	207	START_STARD7-like Lipid-binding START domain of ma	99.28
cd08903	208	START_STARD5-like Lipid-binding START domain of ma	99.23
cd07825	144	SRPBCC_7 Ligand-binding SRPBCC domain of an unchar	99.21
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	99.2
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	99.2
cd08910	207	START_STARD2-like Lipid-binding START domain of ma	99.18
cd08913	240	START_STARD14-like Lipid-binding START domain of m	99.15
COG5637	217	Predicted integral membrane protein [Function unkn	99.14
cd00177	193	START Lipid-binding START domain of mammalian STAR	99.11
cd08873	235	START_STARD14_15-like Lipid-binding START domain o	99.08
cd08872	235	START_STARD11-like Ceramide-binding START domain o	99.08
cd08914	236	START_STARD15-like Lipid-binding START domain of m	99.07
cd08867	206	START_STARD4_5_6-like Lipid-binding START domain o	99.06
smart00234	206	START in StAR and phosphatidylcholine transfer pro	99.02
cd07816	148	Bet_v1-like Ligand-binding bet_v_1 domain of major	98.85
PF01852	206	START: START domain; InterPro: IPR002913 START (St	98.81
cd08908	204	START_STARD12-like C-terminal lipid-binding START	98.78
KOG3177	227	consensus Oligoketide cyclase/lipid transport prot	98.75
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	98.73
cd08893	136	SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi	98.65
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	98.64
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	98.63
cd08899	157	SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan	98.6
cd08904	204	START_STARD6-like Lipid-binding START domain of ma	98.55
PF03364	130	Polyketide_cyc: Polyketide cyclase / dehydrase and	98.47
cd08894	139	SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan	98.37
cd08898	145	SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan	98.35
cd08909	205	START_STARD13-like C-terminal lipid-binding START	98.33
cd08897	133	SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan	98.31
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	98.27
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	98.17
cd08896	146	SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan	98.14
cd08902	202	START_STARD4-like Lipid-binding START domain of ma	98.11
cd08895	146	SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan	98.08
cd08901	136	SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan	98.06
PF08327	124	AHSA1: Activator of Hsp90 ATPase homolog 1-like pr	98.03
cd08900	143	SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan	97.99
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	97.97
cd08891	149	SRPBCC_CalC Ligand-binding SRPBCC domain of Microm	97.93
PRK10724	158	hypothetical protein; Provisional	97.91
cd07826	142	SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan	97.89
COG3832	149	Uncharacterized conserved protein [Function unknow	97.51
cd08907	205	START_STARD8-like C-terminal lipid-binding START d	97.43
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	97.42
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	97.32
cd08892	126	SRPBCC_Aha1 Putative hydrophobic ligand-binding SR	97.18
cd07817	139	SRPBCC_8 Ligand-binding SRPBCC domain of an unchar	97.02
PTZ00220	132	Activator of HSP-90 ATPase; Provisional	96.91
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	96.84
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	96.26
cd07818	150	SRPBCC_1 Ligand-binding SRPBCC domain of an unchar	96.02
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	95.97
PLN00188	719	enhanced disease resistance protein (EDR2); Provis	95.96
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	95.92
KOG2761	219	consensus START domain-containing proteins involve	95.6
COG4276	153	Uncharacterized conserved protein [Function unknow	95.56
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	94.99
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	94.98
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	94.87
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	93.61
cd08877	215	START_2 Uncharacterized subgroup of the steroidoge	93.6
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	93.46
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	93.41
cd08911	207	START_STARD7-like Lipid-binding START domain of ma	93.15
cd08871	222	START_STARD10-like Lipid-binding START domain of m	92.59
cd08910	207	START_STARD2-like Lipid-binding START domain of ma	92.57
PF01852	206	START: START domain; InterPro: IPR002913 START (St	91.74
cd07812	141	SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR	91.6
cd08906	209	START_STARD3-like Cholesterol-binding START domain	91.12
cd08864	208	SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-	90.56
cd08905	209	START_STARD1-like Cholesterol-binding START domain	90.54
cd07820	137	SRPBCC_3 Ligand-binding SRPBCC domain of an unchar	89.85
COG2867	146	Oligoketide cyclase/lipid transport protein [Lipid	89.01
PF08982	149	DUF1857: Domain of unknown function (DUF1857); Int	88.9
smart00234	206	START in StAR and phosphatidylcholine transfer pro	87.59
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	83.93
cd08903	208	START_STARD5-like Lipid-binding START domain of ma	83.07
cd08867	206	START_STARD4_5_6-like Lipid-binding START domain o	82.69
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	82.44
COG2005	130	ModE N-terminal domain of molybdenum-binding prote	81.98
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	81.68
cd08872	235	START_STARD11-like Ceramide-binding START domain o	81.28

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.91  E-value=6.2e-23  Score=184.99  Aligned_cols=141  Identities=44%  Similarity=0.737  Sum_probs=124.0

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecC--CCeEEEE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH--EQEISFE  245 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~--~rrIsf~  245 (554)
                      |++++.|+|||++||++|+|+++||+|+|.|.+++++.+.+++.++++.+..+++...+...+++++.+.+  ++.+.|+
T Consensus         1 ~~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~   80 (144)
T cd08866           1 VVARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFFKFEARVVLELREREEFPRELDFE   80 (144)
T ss_pred             CeEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEEEE
Confidence            46899999999999999999999999999999999998877777777766666555556666666666544  6899999


Q ss_pred             EEecCCceeEEEEEEEEcCC-CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          246 QVEGDFDSFQGKWLFEQLGS-HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       246 ~veGdfr~f~G~W~Leplgd-G~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      +++|+|..+.|.|+|++.++ ++|+|+|.++++|.  +.+|.++++.++++.+..+|++||++||+
T Consensus        81 ~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~--~~~p~~l~~~~~~~~~~~~l~~lr~~ae~  144 (144)
T cd08866          81 MVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPD--FFAPVFLVEFVLRQDLPTNLLAIRAEAES  144 (144)
T ss_pred             EcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999987 68999999999985  57899999999999999999999999984

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PRK10724 hypothetical protein; Provisional

Probab=99.86  E-value=1.5e-20  Score=177.36  Aligned_cols=146  Identities=15%  Similarity=0.254  Sum_probs=128.6

Q ss_pred             CCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEE-EEeccceeEEEEEEEEEEEEeecCCC
Q 008769          162 GGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRIL-QEGCKGLLYMVLHARVVMDICEQHEQ  240 (554)
Q Consensus       162 ~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~-q~g~~gil~~~~~~rvvLdv~E~~~r  240 (554)
                      +..|-.++.+++|++|+++||+++.|+++||+|+|+|++++++++.+++++.. ..+..++ ...|++++++    .+++
T Consensus        11 ~~~M~~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~~~a~l~v~~~g~-~~~f~srv~~----~~~~   85 (158)
T PRK10724         11 EIVMPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQMTAAVDVSKAGI-SKTFTTRNQL----TSNQ   85 (158)
T ss_pred             cCcCCeEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCEEEEEEEEeeCCc-cEEEEEEEEe----cCCC
Confidence            34477899999999999999999999999999999999999999988876554 4566764 4677777665    4677


Q ss_pred             eEEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 008769          241 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD  314 (554)
Q Consensus       241 rIsf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~~  314 (554)
                      +|.|.+++|+|+.++|.|+|+|.++++|+|+|.++|+++  .+++..+++..+.+....+++||++||+++|+-
T Consensus        86 ~I~~~~~~GpF~~l~g~W~f~p~~~~~t~V~~~l~fef~--s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~~yg~  157 (158)
T PRK10724         86 SILMQLVDGPFKKLIGGWKFTPLSQEACRIEFHLDFEFT--NKLIELAFGRVFKELASNMVQAFTVRAKEVYSA  157 (158)
T ss_pred             EEEEEecCCChhhccceEEEEECCCCCEEEEEEEEEEEc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999998778999999999985  578999999999999999999999999998864

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=99.86  E-value=1.2e-20  Score=170.07  Aligned_cols=135  Identities=23%  Similarity=0.378  Sum_probs=114.5

Q ss_pred             EEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEE-EeccceeEEEEEEEEEEEEeecCCCeEEEEEE
Q 008769          169 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ-EGCKGLLYMVLHARVVMDICEQHEQEISFEQV  247 (554)
Q Consensus       169 ~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q-~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~v  247 (554)
                      +.++.|+||+++||++++|+++||+|+|+|.+++++++.++...++. .+..+ +...++++++    ..++++|.|.++
T Consensus         2 ~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~i~~~~~   76 (138)
T cd07813           2 SKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDELEAELTVGFGG-IRESFTSRVT----LVPPESIEAELV   76 (138)
T ss_pred             eEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCEEEEEEEEeecc-ccEEEEEEEE----ecCCCEEEEEec
Confidence            57899999999999999999999999999999999998877654433 23322 1234444433    346889999999


Q ss_pred             ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          248 EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       248 eGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      +|+|+.++|.|+|+|.++|+|+|+|.++++|+  +++|.++++.++.+.+..+|.+|+++|++
T Consensus        77 ~g~~~~~~g~w~~~p~~~~~T~v~~~~~~~~~--~~l~~~l~~~~~~~~~~~~l~~f~~~~~~  137 (138)
T cd07813          77 DGPFKHLEGEWRFKPLGENACKVEFDLEFEFK--SRLLEALAGLVFDEVAKKMVDAFEKRAKQ  137 (138)
T ss_pred             CCChhhceeEEEEEECCCCCEEEEEEEEEEEC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999889999999999995  67999999999999999999999999875

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=99.79  E-value=5.8e-18  Score=152.26  Aligned_cols=137  Identities=23%  Similarity=0.366  Sum_probs=110.4

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCE--EEEEEEeccceeEEEEEEEEEEEEeecC-CCeEEE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNK--VRILQEGCKGLLYMVLHARVVMDICEQH-EQEISF  244 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~--vrv~q~g~~gil~~~~~~rvvLdv~E~~-~rrIsf  244 (554)
                      ++.+++|+||+++||++|+|+++||+|+|+ ..++++...++.  +..+..+..+.. +.+....    ...+ +++|.|
T Consensus         1 ~~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~----~~~~~~~~i~~   74 (142)
T cd08861           1 VEHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGSV-HTWTSRR----VLDPEGRRIVF   74 (142)
T ss_pred             CeEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCcE-EEEEEEE----EEcCCCCEEEE
Confidence            357899999999999999999999999999 888888765554  233455444432 3443322    2234 778999


Q ss_pred             EEEe--cCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          245 EQVE--GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       245 ~~ve--Gdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      .++.  |+|..++|.|+|++.++++|+|+|.+++++....+++..++.+.+.+.++.+|++||+++|+
T Consensus        75 ~~~~~~~~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~  142 (142)
T cd08861          75 RQEEPPPPVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER  142 (142)
T ss_pred             EEeeCCCChhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence            9987  88889999999999987789999999999864456788899999999999999999999984

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=99.77  E-value=2.2e-17  Score=153.48  Aligned_cols=139  Identities=17%  Similarity=0.355  Sum_probs=111.1

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEE---EeccceeEEEEEEEEEEEEeecCCCeEEE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ---EGCKGLLYMVLHARVVMDICEQHEQEISF  244 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q---~g~~gil~~~~~~rvvLdv~E~~~rrIsf  244 (554)
                      .+.+|+|+|||++||++++|+++||+|+|.|++++++++.+.+..+..   ....++ ...|+++++++   .+..+|.|
T Consensus         3 ~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~-~~~w~s~~~~~---~~~~~i~~   78 (146)
T cd08860           3 TDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGT-VWSWVSERTLD---PVNRTVRA   78 (146)
T ss_pred             ceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCE-EEEEEEEEEec---CCCcEEEE
Confidence            568999999999999999999999999999999999998766543321   112343 35666554432   23457888


Q ss_pred             E-EEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          245 E-QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       245 ~-~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      . ...|+|..+.|.|+|++.++| |+|+|.++|+...+.+++..++.+.+...++..|++||++||+.
T Consensus        79 ~~~~~~p~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~  145 (146)
T cd08860          79 RRVETGPFAYMNIRWEYTEVPEG-TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAA  145 (146)
T ss_pred             EEecCCCcceeeeeEEEEECCCC-EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhhc
Confidence            4 335889999999999999775 99999999997644567788899999999999999999999974

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp

Probab=99.76  E-value=1.5e-17  Score=147.69  Aligned_cols=125  Identities=34%  Similarity=0.569  Sum_probs=102.8

Q ss_pred             EcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEE-EeccceeEEEEEEEEEEEEeecCCCeEEEEEEecCCc
Q 008769          174 VKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ-EGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFD  252 (554)
Q Consensus       174 I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q-~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~veGdfr  252 (554)
                      |+||+++||++++||++||+|+|+|.+++++++.++++++.. ....+ ....|.++++    +.++..|.+.++.|+|+
T Consensus         1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~g~~~   75 (130)
T PF03364_consen    1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGDGMRARWEVKFGG-IKRSWTSRVT----EDPPERIRFEQISGPFK   75 (130)
T ss_dssp             ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECCEEEEEEEECTTT-TCEEEEEEEE----EECTTTEEEESSETTEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCeEEEEEEEecCC-EEEEEEEEEE----EEEeeeeeeeecCCCch
Confidence            789999999999999999999999999999999888765543 33333 3355665543    34555599999999999


Q ss_pred             eeEEEEEEEEcCC----CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHH
Q 008769          253 SFQGKWLFEQLGS----HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIR  305 (554)
Q Consensus       253 ~f~G~W~Leplgd----G~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR  305 (554)
                      .++|.|+|++.++    ..|+|+|.++++|  ++++|..+++.++++.++.++++||
T Consensus        76 ~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  130 (130)
T PF03364_consen   76 SFEGSWRFEPLGGNEGGTRTRVTYDYEVDP--PGPLPGFLARQFFRRDLRQMLEAFR  130 (130)
T ss_dssp             EEEEEEEEEEETTECCEEEEEEEEEEEEET--SSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcEEEEEEEECCCCcCCCEEEEEEEEEEec--CcHhHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999884    3578888888877  4679999999999999999999986

are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.74  E-value=1.1e-16  Score=142.22  Aligned_cols=134  Identities=19%  Similarity=0.296  Sum_probs=105.4

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCE-E-EEEE-EeccceeEEEEEEEEEEEEeecCCCeEE
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNK-V-RILQ-EGCKGLLYMVLHARVVMDICEQHEQEIS  243 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~-v-rv~q-~g~~gil~~~~~~rvvLdv~E~~~rrIs  243 (554)
                      .++.++.|+|||++||++|+|+++||+|+|+|.+++++...++. . .... .+..++     ...++.++...++.+|.
T Consensus         3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~   77 (140)
T cd07819           3 KVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAYGI-----KDTYALEYTWDGAGSVS   77 (140)
T ss_pred             eEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeeeeE-----EEEEEEEEEEcCCCcEE
Confidence            57899999999999999999999999999999999998654432 2 1111 121111     11233344434467899


Q ss_pred             EEEEecC-CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 008769          244 FEQVEGD-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  308 (554)
Q Consensus       244 f~~veGd-fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rA  308 (554)
                      |+..+|. +..+.|.|+|++.++ +|+|+|..++++.  +++|.++++.+.+.....++++|+++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~  140 (140)
T cd07819          78 WTLVEGEGNRSQEGSYTLTPKGD-GTRVTFDLTVELT--VPLPGFLKRKAEPLVLDEALKGLKKRV  140 (140)
T ss_pred             EEEecccceeEEEEEEEEEECCC-CEEEEEEEEEEec--CCCCHHHHHHhhhHHHHHHHHhHhhhC
Confidence            9999876 668899999999987 6999999999984  579999999999999999999999864

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]

Probab=99.73  E-value=3.5e-17  Score=151.72  Aligned_cols=142  Identities=19%  Similarity=0.340  Sum_probs=123.4

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEE-EEeccceeEEEEEEEEEEEEeecCCC-eEE
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRIL-QEGCKGLLYMVLHARVVMDICEQHEQ-EIS  243 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~-q~g~~gil~~~~~~rvvLdv~E~~~r-rIs  243 (554)
                      .++..+..|+++|+++|+++.|++.||+|+|+|..++|+++.+..+... .++..++- .+|+++++++    ++. .|.
T Consensus         2 ~~~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i~-e~F~Trv~~~----~~~~~I~   76 (146)
T COG2867           2 PQIERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGFKGIR-ETFTTRVTLK----PTARSID   76 (146)
T ss_pred             CeeEeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEhhhee-eeeeeeeeec----Cchhhhh
Confidence            4578899999999999999999999999999999999999988876543 35666643 5677776654    554 899


Q ss_pred             EEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 008769          244 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD  314 (554)
Q Consensus       244 f~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~~  314 (554)
                      ...++|+|+.+.|.|+|+|+++++|.|++.++|+++  ..|.+.++...+......+.+++.+||...++.
T Consensus        77 ~~l~~GPFk~L~~~W~F~pl~~~~ckV~f~ldfeF~--s~ll~~~~g~~f~~~a~~mv~aF~kRA~~~y~~  145 (146)
T COG2867          77 MKLIDGPFKYLKGGWQFTPLSEDACKVEFFLDFEFK--SRLLGALIGPVFKRLASKMVEAFEKRAKEVYGL  145 (146)
T ss_pred             hhhhcCChhhhcCceEEEECCCCceEEEEEEEeeeh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999998889999999999986  568888999999999999999999999988764

>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.64  E-value=4.1e-15  Score=132.28  Aligned_cols=133  Identities=22%  Similarity=0.299  Sum_probs=103.6

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV  247 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~v  247 (554)
                      |+.++.|+||+++||++++|+++||+|+|+|.+++++.+.+....+.  ...+ ....+..+++   ...+++.|.|...
T Consensus         2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~g-~~~~~~~~v~---~~~~~~~i~~~~~   75 (139)
T cd07817           2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDTRSHWKAK--GPAG-LSVEWDAEIT---EQVPNERIAWRSV   75 (139)
T ss_pred             eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCCceEEEEe--cCCC-CcEEEEEEEe---ccCCCCEEEEEEC
Confidence            67899999999999999999999999999999999986533322221  1112 2234444432   2246778999988


Q ss_pred             ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccch----HHHHHHHHHhhHHHHHHHHHHHHH
Q 008769          248 EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLS----EAIMEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       248 eGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP----~~Lver~vre~l~~~L~ALR~rAE  309 (554)
                      .|.+ .+.|.|+|++.++++|+|+|+++++|..  +++    ..+++..+++.+...|+.||+.||
T Consensus        76 ~~~~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE  138 (139)
T cd07817          76 EGAD-PNAGSVRFRPAPGRGTRVTLTIEYEPPG--GAEGAAVAGLLGGEPERQLREDLRRFKQLVE  138 (139)
T ss_pred             CCCC-CcceEEEEEECCCCCeEEEEEEEEECCc--chhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence            8887 8899999999887789999999999852  333    356889999999999999999987

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=99.63  E-value=2.6e-14  Score=136.67  Aligned_cols=162  Identities=15%  Similarity=0.248  Sum_probs=120.1

Q ss_pred             CceeecccccCCCCcccceEEEeeeccccccCCc-eEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCC
Q 008769          131 KWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGV-HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN  209 (554)
Q Consensus       131 ~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~-~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~  209 (554)
                      +|++.++.+|+       +||.+      ++.++ .+.++++++|++|+++||+++.|++.||+|.|+|.+++++++.++
T Consensus        18 ~W~~~~~~~~v-------~v~~~------~~~~~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~   84 (195)
T cd08876          18 DWQLVKDKDGI-------KVYTR------DVEGSPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDD   84 (195)
T ss_pred             CCEEEecCCCe-------EEEEE------ECCCCCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCC
Confidence            69999999999       99999      44333 588999999999999999999999999999999999999998665


Q ss_pred             -EEEEEEEeccce-e-EEEEEEEEEEEEeecCCCeEEEEEEec----C-------CceeEEEEEEEEcCCCeEEEEEEEE
Q 008769          210 -KVRILQEGCKGL-L-YMVLHARVVMDICEQHEQEISFEQVEG----D-------FDSFQGKWLFEQLGSHHTLLKYSVE  275 (554)
Q Consensus       210 -~vrv~q~g~~gi-l-~~~~~~rvvLdv~E~~~rrIsf~~veG----d-------fr~f~G~W~LeplgdG~TrVtY~v~  275 (554)
                       ...++..-.... + ..-|........ ...+..+.+...++    +       +..+.|.|.|++.++++|+|+|..+
T Consensus        85 ~~~i~~~~~~~p~pvs~Rdfv~~~~~~~-~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~  163 (195)
T cd08876          85 NERSVYTVIDLPWPVKDRDMVLRSTTEQ-DADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAY  163 (195)
T ss_pred             CcEEEEEEEecccccCCceEEEEEEEEE-cCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEE
Confidence             333333211110 0 011111111111 11133333333322    1       4578899999999888999999999


Q ss_pred             EEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 008769          276 SKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  308 (554)
Q Consensus       276 ~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rA  308 (554)
                      ++|+  +++|.++++.+++..+..++++|+++|
T Consensus       164 ~dp~--g~iP~~lv~~~~~~~~~~~l~~l~~~~  194 (195)
T cd08876         164 ADPG--GSIPGWLANAFAKDAPYNTLENLRKQL  194 (195)
T ss_pred             eCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9994  689999999999999999999999987

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.58  E-value=7.4e-14  Score=123.00  Aligned_cols=136  Identities=19%  Similarity=0.321  Sum_probs=100.2

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCC----EEEEEEEeccceeEEEEEEEEEEEEeecCCCeEE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN----KVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS  243 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~----~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIs  243 (554)
                      |+.++.|+||+++||++|+|+++|++|+|.+..++++...+.    .... .....+. .+.+..+++   ...+++.+.
T Consensus         1 ~~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~-~~~~~g~-~~~~~~~v~---~~~p~~~~~   75 (140)
T cd08865           1 VEESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQ-VRKFLGR-RIELTYEIT---EYEPGRRVV   75 (140)
T ss_pred             CceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEE-EEEecCc-eEEEEEEEE---EecCCcEEE
Confidence            467899999999999999999999999999999998864322    2222 2222221 123333322   124778999


Q ss_pred             EEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          244 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       244 f~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      |....|++. +.+.|+|++.++ +|+|+|+.++++.+...+...++...++..+...|++|++++|+
T Consensus        76 ~~~~~~~~~-~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~  140 (140)
T cd08865          76 FRGSSGPFP-YEDTYTFEPVGG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA  140 (140)
T ss_pred             EEecCCCcc-eEEEEEEEEcCC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence            998777664 699999999876 69999999998732122345578889999999999999999874

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=99.57  E-value=6.7e-13  Score=117.28  Aligned_cols=137  Identities=21%  Similarity=0.353  Sum_probs=104.1

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEE-EEEEEeccceeEEEEEEEEEEEEeecC-CCeE
Q 008769          165 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV-RILQEGCKGLLYMVLHARVVMDICEQH-EQEI  242 (554)
Q Consensus       165 ~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~v-rv~q~g~~gil~~~~~~rvvLdv~E~~-~rrI  242 (554)
                      |..++.++.|+|||++||++|+|++++++|.|.+..++++...+... .....  .+.  ..++.+++ + . .+ ++.+
T Consensus         1 M~~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--~g~--~~~~~~i~-~-~-~~~~~~~   73 (139)
T PF10604_consen    1 MFKVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVRV--AGR--GTVREEIT-E-Y-DPEPRRI   73 (139)
T ss_dssp             -EEEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEEE--CSC--SEEEEEEE-E-E-ETTTTEE
T ss_pred             CEEEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEEe--ccc--cceeEEEE-E-e-cCCCcEE
Confidence            45789999999999999999999999999999999999987444433 22221  121  12222221 2 2 24 7899


Q ss_pred             EEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769          243 SFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       243 sf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE  309 (554)
                      .|+.....+..+.+.|+|++.++| |+|+++.++++...+++...++...+...+...|++|++.+|
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E  139 (139)
T PF10604_consen   74 TWRFVPSGFTNGTGRWRFEPVGDG-TRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE  139 (139)
T ss_dssp             EEEEESSSSCEEEEEEEEEEETTT-EEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecceeEEEEEEEEEEcCCC-EEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence            999865555678999999999976 999999999963335567778899999999999999999987

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=99.56  E-value=1.8e-13  Score=120.83  Aligned_cols=133  Identities=19%  Similarity=0.328  Sum_probs=103.6

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC--CEEE-EEEEeccceeEEEEEEEEEEEEeecCC-CeE
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN--NKVR-ILQEGCKGLLYMVLHARVVMDICEQHE-QEI  242 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g--~~vr-v~q~g~~gil~~~~~~rvvLdv~E~~~-rrI  242 (554)
                      .|+.+++|+||+++||++++|+++|+.|+|.+.+++++...+  +..+ +...  .+   ..+..+++ +  ..++ ++|
T Consensus         2 ~i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~--~g---~~~~~~i~-~--~~~~~~~i   73 (140)
T cd07821           2 KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLK--DG---GTVRERLL-A--LDDAERRY   73 (140)
T ss_pred             cEEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeC--CC---CEEEEEeh-h--cCccCCEE
Confidence            478899999999999999999999999999999999986542  2222 2222  11   12222221 1  1345 899


Q ss_pred             EEEEEec--CCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769          243 SFEQVEG--DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       243 sf~~veG--dfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE  309 (554)
                      .|++..|  ++..+.+.|+|++.++++|+|+|+..+++.  +.++.++++..+.+.+...|++|+++++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~L~~~~~  140 (140)
T cd07821          74 SYRIVEGPLPVKNYVATIRVTPEGDGGTRVTWTAEFDPP--EGLTDELARAFLTGVYRAGLAALKAALE  140 (140)
T ss_pred             EEEecCCCCCcccceEEEEEEECCCCccEEEEEEEEecC--CCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999875  345789999999998878999999999985  3378889999999999999999999875

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.54  E-value=2.6e-13  Score=123.38  Aligned_cols=139  Identities=18%  Similarity=0.213  Sum_probs=99.4

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEe------cCCEEEEEEEeccceeEEEEEEEEEEEEeecCC
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR------ENNKVRILQEGCKGLLYMVLHARVVMDICEQHE  239 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r------~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~  239 (554)
                      ..++.++.|+||+++||++++|+++||+|+|+|..+..+..      .+.+.++...+........+  ++   ....++
T Consensus         2 ~~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~--~v---~~~~p~   76 (150)
T cd07818           2 YRVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVGEGEM--EI---TESVPN   76 (150)
T ss_pred             eEEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcccceEE--EE---EecCCC
Confidence            35889999999999999999999999999999987654432      11122222222221100111  11   112467


Q ss_pred             CeEEEEEEe-cCCc-eeEEEEEEEEcCCCeEEEEEEEEEEeccCcc--chHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          240 QEISFEQVE-GDFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSL--LSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       240 rrIsf~~ve-Gdfr-~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~--LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      +++.|+... |++. .+.+.|+|++.++ +|+|+|.+++++.++.+  +...++.+.+++++...|++||+++|+
T Consensus        77 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~  150 (150)
T cd07818          77 ERIEYELRFIKPFEATNDVEFTLEPVGG-GTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK  150 (150)
T ss_pred             cEEEEEEEecCCccccceEEEEEEEcCC-ceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence            899999885 7775 7899999999954 69999999998642211  345668999999999999999999885

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=99.54  E-value=3.1e-13  Score=120.67  Aligned_cols=137  Identities=13%  Similarity=0.231  Sum_probs=99.7

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEE-eccceeEEEEEEEEEEEEee-cCCCeEEE
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE-GCKGLLYMVLHARVVMDICE-QHEQEISF  244 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~-g~~gil~~~~~~rvvLdv~E-~~~rrIsf  244 (554)
                      +++.++.|+|||++||++|+|+++|++|+|+|.+++++..  +...+... +. +.+...+....  .+.+ .++.++.+
T Consensus         2 ~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~   76 (144)
T cd05018           2 KISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGP--NEYEATVKLKV-GPVKGTFKGKV--ELSDLDPPESYTI   76 (144)
T ss_pred             eeeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCC--CeEEEEEEEEE-ccEEEEEEEEE--EEEecCCCcEEEE
Confidence            4788999999999999999999999999999999988753  33322221 22 21212333222  2333 34577877


Q ss_pred             EEEe-cC--CceeEEEEEEEEcCCCeEEEEEEEEEEeccC-ccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769          245 EQVE-GD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKN-SLLSEAIMEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       245 ~~ve-Gd--fr~f~G~W~LeplgdG~TrVtY~v~~eP~~g-g~LP~~Lver~vre~l~~~L~ALR~rAE  309 (554)
                      .... |.  +..+.+.|+|++. +++|+|+|++++++.+. ..++.++++..+++.+...+++||++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~  144 (144)
T cd05018          77 TGEGKGGAGFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKIG  144 (144)
T ss_pred             EEEEcCCCceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            7653 22  5588999999998 56799999999997521 1247888999999999999999998863

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=99.51  E-value=8.3e-13  Score=117.31  Aligned_cols=136  Identities=15%  Similarity=0.115  Sum_probs=99.1

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEec-CCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEE
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRE-NNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE  245 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~-g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~  245 (554)
                      +++.++.|+||++.||++++|+++||+|+|+|..++++... +.+.+....+..+   ..+...++ +  ..+++++.|.
T Consensus         2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i~-~--~~p~~~~~~~   75 (138)
T cd08862           2 KFEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPGL---VRSTFTVT-E--LRPGHSFTWT   75 (138)
T ss_pred             EEEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCCC---CceEEEEE-E--ecCCCEEEEE
Confidence            47889999999999999999999999999999999998654 2222222222112   12222221 2  2467889998


Q ss_pred             EEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          246 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       246 ~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      ... +.....++|+|++.++++|+|+|+.++.... ..+...++.+.++..+...|++||+.+|.
T Consensus        76 ~~~-~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~lk~~~E~  138 (138)
T cd08862          76 GPA-PGISAVHRHEFEAKPDGGVRVTTSESLSGPL-AFLFGLFVGKKLRALLPEWLEGLKAAAEQ  138 (138)
T ss_pred             ecC-CCEEEEEEEEEEEcCCCcEEEEEEEEeecch-HHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence            654 3345578999999876789999998887421 23446678999999999999999999873

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.47  E-value=1.5e-12  Score=119.32  Aligned_cols=133  Identities=17%  Similarity=0.276  Sum_probs=94.5

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEe-cCCE--EEE--EEEeccceeEEEEEEEEEEEEee-cCCC
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR-ENNK--VRI--LQEGCKGLLYMVLHARVVMDICE-QHEQ  240 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r-~g~~--vrv--~q~g~~gil~~~~~~rvvLdv~E-~~~r  240 (554)
                      ++..+..|+||+++||++++|+++||+|+|+|.+++++.. .+.+  .+.  ...+..+. ...+..+    +++ .+++
T Consensus         2 ~~~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~----v~~~~p~~   76 (146)
T cd07824           2 RFHTVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPY-RLRFELR----VTRIEPLS   76 (146)
T ss_pred             cceEEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCc-EEEEEEE----EEeecCCc
Confidence            4567788999999999999999999999999999999873 2221  122  11222221 1223332    333 4778


Q ss_pred             eEEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEecc-----CccchHHHHHHHHHhhHHHHHHHHHHH
Q 008769          241 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQK-----NSLLSEAIMEEVIYEDLPSNLCAIRDY  307 (554)
Q Consensus       241 rIsf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~-----gg~LP~~Lver~vre~l~~~L~ALR~r  307 (554)
                      .+.|. ..|++.. .++|+|++.++ +|+|+|+.++++.+     -.+++..++...+++.++.++++||++
T Consensus        77 ~~~~~-~~g~~~~-~~~~~~~~~~~-gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~  145 (146)
T cd07824          77 LLEVR-ASGDLEG-VGRWTLAPDGS-GTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR  145 (146)
T ss_pred             EEEEE-EEEeeeE-EEEEEEEEcCC-CEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence            99997 4687765 89999999765 69999999999631     113556667788888888888888875

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=99.47  E-value=1e-12  Score=129.30  Aligned_cols=164  Identities=8%  Similarity=0.068  Sum_probs=114.6

Q ss_pred             CCceeeccc-ccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHH-HHHhCcCcccccCcCCcEEEEEEec
Q 008769          130 SKWGVFGQV-CRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVW-NVMTAYETLPEIVPNLAISKILSRE  207 (554)
Q Consensus       130 ~~W~~~~~~-~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VW-aVLTDyE~yPewiP~V~sSrVL~r~  207 (554)
                      ++|++.++. +||       .||.+      ++.+....++++++|++|++++| ++|.|.+.+++|+++|.+++++++-
T Consensus        25 ~~W~l~~~~~~gi-------~V~s~------~~~~~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~   91 (209)
T cd08906          25 ENWKFEKNNDNGD-------TVYTL------EVPFHGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRV   91 (209)
T ss_pred             cCCEEEEecCCCC-------EEEEe------ccCCCCcEEEEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeec
Confidence            589999876 999       99998      45444477899999999999998 6999999999999999999999885


Q ss_pred             CC-EEEEEEEeccc----eeEEEEEEEEEEEEeecCCCeEEEE-E--------EecCCc---eeEEEEEEEE-cCCCeEE
Q 008769          208 NN-KVRILQEGCKG----LLYMVLHARVVMDICEQHEQEISFE-Q--------VEGDFD---SFQGKWLFEQ-LGSHHTL  269 (554)
Q Consensus       208 g~-~vrv~q~g~~g----il~~~~~~rvvLdv~E~~~rrIsf~-~--------veGdfr---~f~G~W~Lep-lgdG~Tr  269 (554)
                      +. ...++......    +-..-|......  ....+..+... .        .+|.++   .+.|.|.+.+ .+++.|+
T Consensus        92 ~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~--~~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~  169 (209)
T cd08906          92 DDNTLVSYDVAAGAAGGVVSPRDFVNVRRI--ERRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCT  169 (209)
T ss_pred             cCCcEEEEEEccccccCCCCCCceEEEEEE--EecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceE
Confidence            43 32233321100    000001110000  00111122111 1        112222   4577888775 6777899


Q ss_pred             EEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          270 LKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       270 VtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      |+|.++++|+  |.||.+++|.++.+.+..++.+||++++.
T Consensus       170 vt~~~~~Dp~--G~lP~~lvN~~~~~~~~~~~~~LR~~~~~  208 (209)
T cd08906         170 FIWILNTDLK--GRLPRYLIHQSLAATMFEFASHLRQRIRD  208 (209)
T ss_pred             EEEEEecCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999995  68999999999999999999999999864

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.43  E-value=1.1e-11  Score=109.59  Aligned_cols=137  Identities=16%  Similarity=0.149  Sum_probs=99.9

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEE-EecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKIL-SRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ  246 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL-~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~  246 (554)
                      |+.++.|+||+++||++++|+++++.|+|.+..++.. ...|.+.........+.. ..+...++ +  ..++++|.|..
T Consensus         2 v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~G~~~~~~~~~~~~~~-~~~~~~v~-~--~~p~~~~~~~~   77 (141)
T cd07822           2 ISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLSLALGARLRFVVKLPGGPP-RSFKPRVT-E--VEPPRRLAWRG   77 (141)
T ss_pred             eEEEEEecCCHHHHHHHHhccccccccChhheeEeccccCCCCEEEEEEeCCCCCc-EEEEEEEE-E--EcCCCEeEEEe
Confidence            6789999999999999999999999999999888776 345555544433222111 22333321 2  24678999998


Q ss_pred             EecCCc--eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769          247 VEGDFD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       247 veGdfr--~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE  309 (554)
                      ..++..  ...+.|+|++.++++|+|++...+... ...+...++...+.+++...+++|+..||
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~E  141 (141)
T cd07822          78 GLPFPGLLDGEHSFELEPLGDGGTRFVHRETFSGL-LAPLVLLGLGRDLRAGFEAMNEALKARAE  141 (141)
T ss_pred             cCCCCcEeeEEEEEEEEEcCCCcEEEEEeeEEEEE-EhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence            776533  467899999986678999998776532 12344556889999999999999999876

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=99.37  E-value=1.6e-11  Score=120.30  Aligned_cols=165  Identities=13%  Similarity=0.111  Sum_probs=120.1

Q ss_pred             CCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC
Q 008769          129 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN  208 (554)
Q Consensus       129 ~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g  208 (554)
                      ..+|++.++.+||       +||.|...     ++..+.++++..|++|++.+.++|.|.+.|++|+|.|.+++++...+
T Consensus        21 ~~~W~~~~~~~~i-------~v~~r~~~-----~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~   88 (215)
T cd08877          21 SDGWTLQKESEGI-------RVYYKFEP-----DGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLG   88 (215)
T ss_pred             CCCcEEeccCCCe-------EEEEEeCC-----CCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecC
Confidence            3589999999999       99999422     33389999999999999999999999999999999999999987754


Q ss_pred             CE-EEEEEEeccceeEEEEEEE-EEE-----EEeecCCCeE--EEEE-----------------Ee-cCC--ceeEEEEE
Q 008769          209 NK-VRILQEGCKGLLYMVLHAR-VVM-----DICEQHEQEI--SFEQ-----------------VE-GDF--DSFQGKWL  259 (554)
Q Consensus       209 ~~-vrv~q~g~~gil~~~~~~r-vvL-----dv~E~~~rrI--sf~~-----------------ve-Gdf--r~f~G~W~  259 (554)
                      .. ..++.. ..  ++|.+..| .++     +..+ .+..+  ....                 .+ |..  ..+.|.|.
T Consensus        89 ~~~~v~y~~-~~--~PwPv~~RD~v~~~~~~~~~~-~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~  164 (215)
T cd08877          89 RADKVCYLR-VD--LPWPLSNREAVFRGFGVDRLE-ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFV  164 (215)
T ss_pred             CceEEEEEE-Ee--CceEecceEEEEEEEEEeeec-cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEE
Confidence            32 222321 11  11111111 110     1010 12222  1111                 12 222  26789999


Q ss_pred             EEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          260 FEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       260 LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      |+|++++.|.++|.++++|+ +.++|.++++.+.+..+..++.+|++.|++
T Consensus       165 i~p~~~~~t~v~~~~~~DP~-g~~IP~~liN~~~k~~~~~~~~~l~k~~~~  214 (215)
T cd08877         165 ITPISPTKCYLRFVANVDPK-MSLVPKSLLNFVARKFAGLLFEKIQKAAKN  214 (215)
T ss_pred             EEEcCCCCeEEEEEEEcCCC-cccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999995 345999999999999999999999999875

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=99.37  E-value=6.6e-12  Score=123.35  Aligned_cols=163  Identities=12%  Similarity=0.126  Sum_probs=115.6

Q ss_pred             CCceeec-ccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHH-HHHhCcCcccccCcCCcEEEEEEec
Q 008769          130 SKWGVFG-QVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVW-NVMTAYETLPEIVPNLAISKILSRE  207 (554)
Q Consensus       130 ~~W~~~~-~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VW-aVLTDyE~yPewiP~V~sSrVL~r~  207 (554)
                      ++|++.+ +.+||       .||.+..+      +..+.++++..|++|++.|+ .++.|++++++|+++|.+++++++-
T Consensus        25 ~~W~~~~~~~~gi-------~v~s~~~~------~~~k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~i   91 (209)
T cd08905          25 EGWKTEIVAENGD-------KVLSKVVP------DIGKVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRI   91 (209)
T ss_pred             cCCEEEEecCCCC-------EEEEEEcC------CCCcEEEEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhc
Confidence            4899996 58999       99998433      32277889999999999999 8888999999999999999999875


Q ss_pred             CC-EEEEEEEeccc----eeEEEEEEEEEEEEeecCCCeEEE-EE--------EecCCc--eeEEEEEEEEcCC--CeEE
Q 008769          208 NN-KVRILQEGCKG----LLYMVLHARVVMDICEQHEQEISF-EQ--------VEGDFD--SFQGKWLFEQLGS--HHTL  269 (554)
Q Consensus       208 g~-~vrv~q~g~~g----il~~~~~~rvvLdv~E~~~rrIsf-~~--------veGdfr--~f~G~W~Leplgd--G~Tr  269 (554)
                      +. ...+++.....    +-..-|......  ....+..+.. ..        .+|.++  ...|.|.|+|+++  +.|+
T Consensus        92 d~~~~i~y~~~~p~p~~~vs~RD~V~~~~~--~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~  169 (209)
T cd08905          92 GKDTLITHEVAAETAGNVVGPRDFVSVRCA--KRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTK  169 (209)
T ss_pred             CCCceEEEEEeccCCCCccCccceEEEEEE--EEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceE
Confidence            43 33334321110    000001110000  0011111111 11        123333  5689999999965  7899


Q ss_pred             EEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769          270 LKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       270 VtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE  309 (554)
                      |+|.+.++|+  |.||.++++.++.+.+..+|.+||++++
T Consensus       170 v~~~~~~Dpk--G~iP~~lvN~~~~~~~~~~~~~Lr~~~~  207 (209)
T cd08905         170 LTWLLSIDLK--GWLPKSIINQVLSQTQVDFANHLRQRMA  207 (209)
T ss_pred             EEEEEeecCC--CCCCHHHHHHHhHHhHHHHHHHHHHHHh
Confidence            9999999995  6799999999999999999999999986

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding

Probab=99.35  E-value=2.1e-11  Score=120.08  Aligned_cols=165  Identities=11%  Similarity=0.124  Sum_probs=112.9

Q ss_pred             ccCCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEe
Q 008769          127 DLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR  206 (554)
Q Consensus       127 ~~~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r  206 (554)
                      +..++|++.++.+||       .||.+      ++++....+.++++|++|+++||++|.|.+++++|.+.+.+++++++
T Consensus        19 ~~~~gW~l~~~~~gI-------~Vy~k------~~~~~~~~~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~   85 (205)
T cd08874          19 QATAGWSYQCLEKDV-------VIYYK------VFNGTYHGFLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKT   85 (205)
T ss_pred             hccCCcEEEecCCCE-------EEEEe------cCCCCcceEEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeee
Confidence            345699999999999       99999      55566677889999999999999999999999999999999999988


Q ss_pred             cCCEEE-EEEEeccce----eEEEEEEEEEEEEeecCCCeEEEEEEe---------cCCc--eeEEEEEEEEc---CCCe
Q 008769          207 ENNKVR-ILQEGCKGL----LYMVLHARVVMDICEQHEQEISFEQVE---------GDFD--SFQGKWLFEQL---GSHH  267 (554)
Q Consensus       207 ~g~~vr-v~q~g~~gi----l~~~~~~rvvLdv~E~~~rrIsf~~ve---------Gdfr--~f~G~W~Lepl---gdG~  267 (554)
                      .++... ++++--...    -..-|....+. ..+....-|..+.++         |.++  .+.|.|.++|+   +++.
T Consensus        86 ~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~-~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~  164 (205)
T cd08874          86 FTEDICLVYLVHETPLCLLKQPRDFCCLQVE-AKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQY  164 (205)
T ss_pred             cCCCeEEEEEEecCCCCCCCCCCeEEEEEEE-EECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCc
Confidence            554433 333211010    00011111110 001111112222222         2222  67899999999   8889


Q ss_pred             EEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 008769          268 TLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY  307 (554)
Q Consensus       268 TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~r  307 (554)
                      |+|+|..+++|+ |+-+|.+++|.++.+.... +..|+..
T Consensus       165 t~vty~~q~DPg-gg~iP~~l~N~~~~~~p~~-~~~~~~~  202 (205)
T cd08874         165 TRVIYIAQVALC-GPDVPAQLLSSLSKRQPLV-IARLALF  202 (205)
T ss_pred             EEEEEEEEECCC-CCCCCHHHHhHHHHhccHH-HHHHHHH
Confidence            999999999995 2569999999998876543 3334443

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.

>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.34  E-value=3.8e-11  Score=108.81  Aligned_cols=106  Identities=23%  Similarity=0.328  Sum_probs=81.6

Q ss_pred             EEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCE----EEE-EEEeccceeEEEEEEEEEEEEeecCCCeEE
Q 008769          169 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNK----VRI-LQEGCKGLLYMVLHARVVMDICEQHEQEIS  243 (554)
Q Consensus       169 ~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~----vrv-~q~g~~gil~~~~~~rvvLdv~E~~~rrIs  243 (554)
                      +.++.|+||+++||++++|.+++|+|+|.+.+++++...++.    .++ +.....++ .+.|+++++   ...+++.+.
T Consensus         2 ~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~-~~~w~~~it---~~~p~~~f~   77 (137)
T cd07820           2 ERSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGI-PQRWTTEIT---EVEPPRRFV   77 (137)
T ss_pred             eEEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCC-ceEEEEEEE---EEcCCCeEE
Confidence            578999999999999999999999999999999998654322    111 22222222 245655543   224678999


Q ss_pred             EEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEec
Q 008769          244 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQ  279 (554)
Q Consensus       244 f~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~  279 (554)
                      +.++.|++..++++|+|++.++ +|+|++.+++++.
T Consensus        78 ~~~~~G~~~~w~h~~~f~~~~~-gT~vt~~v~~~~p  112 (137)
T cd07820          78 DEQVSGPFRSWRHTHRFEAIGG-GTLMTDRVEYRLP  112 (137)
T ss_pred             EEeccCCchhCEEEEEEEECCC-ceEEEEEEEEeCC
Confidence            9999999998999999999876 6999999999973

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.33  E-value=4.4e-11  Score=109.55  Aligned_cols=134  Identities=11%  Similarity=0.152  Sum_probs=91.1

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEE-EEeccceeEEEEEEEEEEEEeec--CCCeEEE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRIL-QEGCKGLLYMVLHARVVMDICEQ--HEQEISF  244 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~-q~g~~gil~~~~~~rvvLdv~E~--~~rrIsf  244 (554)
                      |+.++.|+|||+.||++|+|+++|+.|+|.|...+++.  ++..... .....+ +...+..++  .+.+.  +++++.+
T Consensus         1 ~~~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~--~~~~~~~~~~~~~~   75 (146)
T cd07823           1 LENEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEG--DDEYKGTVKVKLGP-ISASFKGTA--RLLEDDEAARRAVL   75 (146)
T ss_pred             CCceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccC--CCeEEEEEEEEEcc-EEEEEEEEE--EEEeccCCCcEEEE
Confidence            35688999999999999999999999999999988753  2333221 112222 223444333  33332  5678877


Q ss_pred             EEEecCCc-----eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHH---HHHHHHHhhHHHHHHHHHHHHH
Q 008769          245 EQVEGDFD-----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEA---IMEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       245 ~~veGdfr-----~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~---Lver~vre~l~~~L~ALR~rAE  309 (554)
                      .....+..     ....+|+|++ .+++|+|+|.+++++.  ++++..   ++++..++.+...+++|++++|
T Consensus        76 ~~~g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~--g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e  145 (146)
T cd07823          76 EATGKDARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALT--GKLAQFGRGGIGDVAGRLLAQFAANLEARLA  145 (146)
T ss_pred             EEEEecCCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEe--eEhHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence            64321111     3566899998 4468999999998874  455443   4777888888888888888876

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=99.32  E-value=6.6e-11  Score=115.46  Aligned_cols=164  Identities=16%  Similarity=0.205  Sum_probs=115.3

Q ss_pred             Cceeecccc-cCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHH-HHhCcCcccccCcCCcEEEEEEecC
Q 008769          131 KWGVFGQVC-RLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWN-VMTAYETLPEIVPNLAISKILSREN  208 (554)
Q Consensus       131 ~W~~~~~~~-gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWa-VLTDyE~yPewiP~V~sSrVL~r~g  208 (554)
                      +|++.++.+ ||       .||.|..      .+..+.++++.+|++|+++|+. ++.|++..++|.+.|.+++++++-+
T Consensus        25 ~W~l~~~~~~~i-------~i~~r~~------~~~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d   91 (208)
T cd08868          25 GWKLEKNTTWGD-------VVYSRNV------PGVGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVID   91 (208)
T ss_pred             CceEEEecCCCC-------EEEEEEc------CCCceEEEEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEec
Confidence            899999998 99       9999943      3333678999999999999985 7789999999999999999998754


Q ss_pred             CE-EEEEEEeccceeEEEEEEE--EEEEEeecCCCe--EEEEEEe--------cCCc--eeEEEEEEEEcCC--CeEEEE
Q 008769          209 NK-VRILQEGCKGLLYMVLHAR--VVMDICEQHEQE--ISFEQVE--------GDFD--SFQGKWLFEQLGS--HHTLLK  271 (554)
Q Consensus       209 ~~-vrv~q~g~~gil~~~~~~r--vvLdv~E~~~rr--Isf~~ve--------Gdfr--~f~G~W~Leplgd--G~TrVt  271 (554)
                      +. ..++...... ..+....|  +.+......+..  |....++        |.++  .+.|.|.|+|+++  ++|.|+
T Consensus        92 ~~~~i~y~~~~~~-~~~~vs~RDfV~~r~~~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~  170 (208)
T cd08868          92 DNTDISYQVAAEA-GGGLVSPRDFVSLRHWGIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFT  170 (208)
T ss_pred             CCcEEEEEEecCc-CCCcccccceEEEEEEEecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEE
Confidence            43 2334321110 00000000  000000011111  2222222        3233  5679999999864  679999


Q ss_pred             EEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          272 YSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       272 Y~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      |.++.+|+  |++|.++++..+...+..++.+||++++.
T Consensus       171 ~~~~~Dp~--G~iP~~lvN~~~~~~~~~~~~~Lr~~~~~  207 (208)
T cd08868         171 WLLNTDLK--GWLPQYLVDQALASVLLDFMKHLRKRIAT  207 (208)
T ss_pred             EEEEECCC--CCCcceeeehhhHHHHHHHHHHHHHHHhh
Confidence            99999994  78999999999999999999999999875

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins

Probab=99.32  E-value=5.7e-11  Score=105.44  Aligned_cols=135  Identities=17%  Similarity=0.133  Sum_probs=97.1

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV  247 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~v  247 (554)
                      |..+++|+||+++||++|+|++++|.|+|.+..+.+....|+.......+..+.. ..+..+++   ...++++|.|+..
T Consensus         2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~Gg~~~~~~~~~~g~~-~~~~~~i~---~~~~~~~i~~~~~   77 (139)
T cd07814           2 ITIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVGGRWFFFMTGPDGEE-GWVSGEVL---EVEPPRRLVFTWA   77 (139)
T ss_pred             eEEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCCceEEEEEECCCCCE-EeccEEEE---EEcCCCeEEEEec
Confidence            6788999999999999999999999999985555555455554433333222211 12222221   2246789999988


Q ss_pred             ecC---CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          248 EGD---FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       248 eGd---fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      .++   +......|+|++.+ ++|+|+|..++.+..   .+...+...++.....+|..||+.+|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~lk~~~E~  139 (139)
T cd07814          78 FSDETPGPETTVTVTLEETG-GGTRLTLTHSGFPEE---DAEQEAREGMEEGWTGTLDRLKALLEK  139 (139)
T ss_pred             ccCCCCCCceEEEEEEEECC-CCEEEEEEEEccChH---hHHHHHHhCHhhHHHHHHHHHHHHhhC
Confidence            763   45778999999998 469999999887631   234467778888999999999999884

This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer

>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

Probab=99.31  E-value=1.2e-10  Score=99.22  Aligned_cols=136  Identities=24%  Similarity=0.318  Sum_probs=95.1

Q ss_pred             EEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEE-eccceeEEEEEEEEEEEEeecCCCeEEEEEE
Q 008769          169 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE-GCKGLLYMVLHARVVMDICEQHEQEISFEQV  247 (554)
Q Consensus       169 ~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~-g~~gil~~~~~~rvvLdv~E~~~rrIsf~~v  247 (554)
                      +.++.|+||+++||++++|+++|+.|+|.+..++++............ .........+..+++   ...++..+.|...
T Consensus         2 ~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~~~   78 (141)
T cd07812           2 EASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGRRLTLTSEVT---EVDPPRPGRFRVT   78 (141)
T ss_pred             cEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCccccceEEEE---EecCCCceEEEEe
Confidence            578899999999999999999999999999999988754432221111 110001112222222   1134568888888


Q ss_pred             ecCCc-eeEEEEEEEEcCCCeEEEEEEEEEEeccCcc-chHHHHHHHHHhhHHHHHHHHHHH
Q 008769          248 EGDFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSL-LSEAIMEEVIYEDLPSNLCAIRDY  307 (554)
Q Consensus       248 eGdfr-~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~-LP~~Lver~vre~l~~~L~ALR~r  307 (554)
                      .+++. .+.+.|.|++.++++|+|++.+.+.+..... ++..++.+.++..+...+.+++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T cd07812          79 GGGGGVDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKAR  140 (141)
T ss_pred             cCCCCcceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHhh
Confidence            77665 7899999999886579999999999753211 356677888888888888777654

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=99.30  E-value=1.5e-10  Score=114.13  Aligned_cols=161  Identities=13%  Similarity=0.105  Sum_probs=118.0

Q ss_pred             CCceeecccccCCCCcccceEEEeeeccccccC-CceEEEEEEEEE-cCCHHHHHHHHhCcCcccccCcCCcEEEEEEec
Q 008769          130 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENG-GVHRCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKILSRE  207 (554)
Q Consensus       130 ~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~-g~~r~V~asI~I-~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~  207 (554)
                      .+|++..+.+||       .||.|      .+. ++...++++.+| ++|+++++++|.|.+..++|.+.|.++++++.-
T Consensus        23 ~~W~~~~~~~gi-------~iy~r------~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~   89 (222)
T cd08871          23 DGWKLKYNKNNV-------KVWTK------NPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQL   89 (222)
T ss_pred             CCcEEEEcCCCe-------EEEEe------eCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEc
Confidence            489999999999       99999      343 457788898887 699999999999999999999999999999874


Q ss_pred             CC--EEEEEEE-------eccceeEEEEEEEEEEEEeecCCC-eEEEEEE--------ecCCc--eeEEEEEEEEcCCCe
Q 008769          208 NN--KVRILQE-------GCKGLLYMVLHARVVMDICEQHEQ-EISFEQV--------EGDFD--SFQGKWLFEQLGSHH  267 (554)
Q Consensus       208 g~--~vrv~q~-------g~~gil~~~~~~rvvLdv~E~~~r-rIsf~~v--------eGdfr--~f~G~W~LeplgdG~  267 (554)
                      +.  .+..+..       +++.++    ... .   ...++. .+....+        .|.++  .+.+.|.|++.++++
T Consensus        90 d~~~~i~y~~~~~P~pvs~RDfV~----~r~-~---~~~~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~  161 (222)
T cd08871          90 NPNNDIGYYSAKCPKPLKNRDFVN----LRS-W---LEFGGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKG  161 (222)
T ss_pred             CCCCEEEEEEeECCCCCCCCeEEE----EEE-E---EeCCCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCC
Confidence            43  2222211       111111    000 0   001111 1111111        23333  457889999998888


Q ss_pred             EEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 008769          268 TLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  313 (554)
Q Consensus       268 TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~  313 (554)
                      |.|+|..+.+|+  |++|.++++.++....+.+|++|++.++++..
T Consensus       162 t~vt~~~~~Dp~--G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~~  205 (222)
T cd08871         162 CTLTYVTQNDPK--GSLPKWVVNKATTKLAPKVMKKLHKAALKYPE  205 (222)
T ss_pred             EEEEEEEecCCC--CCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            999999999994  78999999999999999999999999998744

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins

Probab=99.28  E-value=1.2e-10  Score=114.24  Aligned_cols=159  Identities=13%  Similarity=0.031  Sum_probs=116.4

Q ss_pred             CCceeecccccCCCCcccceEEEeeeccccccC-CceEEEEEEEEE-cCCHHHHHHHHhCcCcccccCcCCcEEEEEEec
Q 008769          130 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENG-GVHRCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKILSRE  207 (554)
Q Consensus       130 ~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~-g~~r~V~asI~I-~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~  207 (554)
                      ++|.+..+.+||       .||.|      ++. .+...+++..++ ++|++++++++.|.+..++|.+.|.+.+++++.
T Consensus        21 ~~W~l~~~~~~i-------~Vy~r------~~~~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~   87 (207)
T cd08911          21 DGWEPFIEKKDM-------LVWRR------EHPGTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDED   87 (207)
T ss_pred             CCcEEEEEcCce-------EEEEe------ccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEcc
Confidence            479999999999       99999      343 446678887767 999999999999999999999999999999874


Q ss_pred             C--CEEEEEEE--------eccceeEEEEEEEEEEEEeecCCCe--EEEEEEe--------cCCc--eeEEEEEEEEcC-
Q 008769          208 N--NKVRILQE--------GCKGLLYMVLHARVVMDICEQHEQE--ISFEQVE--------GDFD--SFQGKWLFEQLG-  264 (554)
Q Consensus       208 g--~~vrv~q~--------g~~gil~~~~~~rvvLdv~E~~~rr--Isf~~ve--------Gdfr--~f~G~W~Leplg-  264 (554)
                      .  +...++..        .++.+    +..++  ... .....  |....++        |.++  .+.|.|.++|.+ 
T Consensus        88 ~~~~~~i~y~~~~~P~P~s~RD~V----~~r~~--~~~-~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~  160 (207)
T cd08911          88 PETGSEIIYWEMQWPKPFANRDYV----YVRRY--IID-EENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKS  160 (207)
T ss_pred             CCCCCEEEEEEEECCCCCCCccEE----EEEEE--EEc-CCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCC
Confidence            2  22223332        11111    11111  111 11112  2222222        3333  789999999983 


Q ss_pred             --CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          265 --SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       265 --dG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                        +++|.++|..+.+|  +|.||.+++|.+....++..|+.|+..+.+
T Consensus       161 ~~~~~~~~~~~~~~dP--gG~IP~~lvN~~~~~~~~~~l~~l~~a~~~  206 (207)
T cd08911         161 FDEPGFEFVLTYFDNP--GVNIPSYITSWVAMSGMPDFLERLRNAALK  206 (207)
T ss_pred             CCCCCeEEEEEEEeCC--CCccCHHHHHHHHHhhccHHHHHHHHHHhc
Confidence              56799999999998  478999999999999999999999998865

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.

>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins

Probab=99.23  E-value=7e-10  Score=108.98  Aligned_cols=165  Identities=13%  Similarity=0.089  Sum_probs=113.7

Q ss_pred             CCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcc--cccCcCCcEEEEEEec
Q 008769          130 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETL--PEIVPNLAISKILSRE  207 (554)
Q Consensus       130 ~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~y--PewiP~V~sSrVL~r~  207 (554)
                      ++|++.++.+||       +||.|.+.   ++.+..  ++++.+|++++++|+++|.|.+++  ++|.+.|.+++++++-
T Consensus        22 ~~W~~~~~~~~i-------~v~~~~~~---~~~~~~--~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~i   89 (208)
T cd08903          22 SGWKTCRRTNEV-------AVSWRPSA---EFAGNL--YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAI   89 (208)
T ss_pred             cCCEEEEcCCCE-------EEEeeecC---CCCCcE--EEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEe
Confidence            589999999999       99999543   234433  779999999999999999999887  9999999999999885


Q ss_pred             CCEE-EEEEEe-cc--c-eeEEEEEEEEEEEEeecCCCeEEE--EEEe--------cCCce----eEEEEEEEEcCCCeE
Q 008769          208 NNKV-RILQEG-CK--G-LLYMVLHARVVMDICEQHEQEISF--EQVE--------GDFDS----FQGKWLFEQLGSHHT  268 (554)
Q Consensus       208 g~~v-rv~q~g-~~--g-il~~~~~~rvvLdv~E~~~rrIsf--~~ve--------Gdfr~----f~G~W~LeplgdG~T  268 (554)
                      ++.. .++... ..  + +-..-|.......  ...+..+..  ..++        |.++.    ..|.|...+.++++|
T Consensus        90 d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~--~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t  167 (208)
T cd08903          90 SDDVSVCRTVTPSAAMKIISPRDFVDVVLVK--RYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKT  167 (208)
T ss_pred             cCCEEEEEEecchhcCCCcCCCceEEEEEEE--ecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCce
Confidence            5433 333311 00  0 0000011100000  112222322  2222        22232    456666666566789


Q ss_pred             EEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          269 LLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       269 rVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      .|+|.+.++|+  |.||.++++.++.+.+..++.+||+.+..
T Consensus       168 ~v~~~~~~Dpk--G~iP~~lvn~~~~~~~~~~~~~Lr~~~~~  207 (208)
T cd08903         168 QLVSFFQTDLS--GYLPQTVVDSFFPASMAEFYNNLTKAVKA  207 (208)
T ss_pred             EEEEEEEeccC--CCcCHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence            99999999995  78999999999999999999999998753

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.

>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.21  E-value=3e-10  Score=102.39  Aligned_cols=135  Identities=18%  Similarity=0.195  Sum_probs=88.7

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEE-----ecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILS-----RENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  241 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~-----r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr  241 (554)
                      +|+.++.|+|||+.||++++|+++||+|+|......+..     +.|+......... +. .+.+..+++ +  ..++++
T Consensus         1 ~i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-g~-~~~~~~~v~-~--~~p~~~   75 (144)
T cd07825           1 QVSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLD-GG-PYRITNHVV-A--FEENRL   75 (144)
T ss_pred             CeEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcC-CC-ceEEEEEEE-E--ECCCCE
Confidence            378899999999999999999999999998643322221     2334333333221 21 234444332 2  257889


Q ss_pred             EEEEEEe-c-CCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHH--HHHHHHhhHHHHHHHHHHHHH
Q 008769          242 ISFEQVE-G-DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAI--MEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       242 Isf~~ve-G-dfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~L--ver~vre~l~~~L~ALR~rAE  309 (554)
                      |.|+... + .......+|+|++.++++|+|++...+....   .+..+  +......++...|..|++.+|
T Consensus        76 l~~~~~~~~~~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~---~~~~~~~~~~~~~~g~~~~l~~L~~~~~  144 (144)
T cd07825          76 IAWRPGPAGQEPGGHRWRWELEPIGPGRTRVTETYDWSAVT---DLKELLGFPAFPEVQLEASLDRLATLAE  144 (144)
T ss_pred             EEEEccCCCCCCCceeEEEEEEECCCCcEEEEEEEeccCCh---hhhhccccCCCCHHHHHHHHHHHHHHhC
Confidence            9998642 2 2235577889999887789999998876421   22222  234567888899999988775

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=99.20  E-value=9.8e-10  Score=107.67  Aligned_cols=158  Identities=7%  Similarity=0.040  Sum_probs=116.3

Q ss_pred             CCceeeccccc----CCCCcccceEEEeeeccccccC-CceEEEEEEEEE-cCCHHHHHHHHhCcCcccccCcCCcEEEE
Q 008769          130 SKWGVFGQVCR----LDRPCFVDEVHLRRFDGLLENG-GVHRCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKI  203 (554)
Q Consensus       130 ~~W~~~~~~~g----i~~~~~~deV~lrr~d~~~e~~-g~~r~V~asI~I-~APpe~VWaVLTDyE~yPewiP~V~sSrV  203 (554)
                      ..|+...+.+|    |       +||.|.      .. .+...+++..++ ++|+++|++++.|.+..++|.+.|.+.++
T Consensus        22 ~~W~~~~~k~~~~~~i-------~vy~r~------~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~   88 (209)
T cd08870          22 QAWQQVMDKSTPDMSY-------QAWRRK------PKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHET   88 (209)
T ss_pred             CcceEhhhccCCCceE-------EEEecc------cCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEE
Confidence            58999999999    9       999993      33 446789999999 56999999999999999999999999999


Q ss_pred             EEecCC--EEEEEEE--------eccceeEEEEEEEEEEEEeecCCCe--EEEEEEe-------cCCc--eeEEEEEEEE
Q 008769          204 LSRENN--KVRILQE--------GCKGLLYMVLHARVVMDICEQHEQE--ISFEQVE-------GDFD--SFQGKWLFEQ  262 (554)
Q Consensus       204 L~r~g~--~vrv~q~--------g~~gil~~~~~~rvvLdv~E~~~rr--Isf~~ve-------Gdfr--~f~G~W~Lep  262 (554)
                      ++..++  .-.++..        .++.++...+        ....+..  |....++       |.++  .+.|.|.++|
T Consensus        89 le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~--------~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p  160 (209)
T cd08870          89 LEEDEKSGTEIVRWVKKFPFPLSDREYVIARRL--------WESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRA  160 (209)
T ss_pred             EEecCCCCcEEEEEEEECCCcCCCceEEEEEEE--------EEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEE
Confidence            988654  2222321        1111111000        0111111  1111111       2322  7899999999


Q ss_pred             c--CCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          263 L--GSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       263 l--gdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      .  ++++|.++|....+|  +|.||.+++|.++...++.+|+.|+..+.+
T Consensus       161 ~~~~~~~t~~~~~~~~dp--~G~IP~wlvN~~~~~~~~~~l~~l~~a~~~  208 (209)
T cd08870         161 VKGDGQGSACEVTYFHNP--DGGIPRELAKLAVKRGMPGFLKKLENALRK  208 (209)
T ss_pred             ecCCCCceEEEEEEEECC--CCCCCHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence            8  778899999999998  467999999999999999999999998854

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=99.20  E-value=3.8e-10  Score=109.90  Aligned_cols=164  Identities=16%  Similarity=0.097  Sum_probs=112.0

Q ss_pred             ccCCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEe
Q 008769          127 DLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR  206 (554)
Q Consensus       127 ~~~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r  206 (554)
                      +..++|.+..+.+||       +||.|..+    .+...+.+++++.|+|++++|++++.|.  -++|.++|.+++++++
T Consensus        16 ~~~~~W~~~~~~~gi-------~I~~k~~~----~~~~l~~~K~~~~v~a~~~~v~~~l~d~--r~~Wd~~~~~~~vie~   82 (197)
T cd08869          16 DKSKGWVSVSSSDHV-------ELAFKKVD----DGHPLRLWRASTEVEAPPEEVLQRILRE--RHLWDDDLLQWKVVET   82 (197)
T ss_pred             hccCCceEEecCCcE-------EEEEEeCC----CCCcEEEEEEEEEeCCCHHHHHHHHHHH--HhccchhhheEEEEEE
Confidence            445799999999999       99999432    1224677899999999999999999886  3999999999999988


Q ss_pred             cCC-EEEEEEE-ecc-ceeEEEEEEEEEEEEeecCCC--eEEEEEEe-------cCCc--eeEEEEEEEEcCCCeEEEEE
Q 008769          207 ENN-KVRILQE-GCK-GLLYMVLHARVVMDICEQHEQ--EISFEQVE-------GDFD--SFQGKWLFEQLGSHHTLLKY  272 (554)
Q Consensus       207 ~g~-~vrv~q~-g~~-gil~~~~~~rvvLdv~E~~~r--rIsf~~ve-------Gdfr--~f~G~W~LeplgdG~TrVtY  272 (554)
                      -++ ...++.. ... .+...-|....... ...++.  .|.+..++       |.++  .+.|.|.++|.++++|+|+|
T Consensus        83 id~~~~i~y~~~~~p~pv~~RDfV~~r~~~-~~~~~g~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty  161 (197)
T cd08869          83 LDEDTEVYQYVTNSMAPHPTRDYVVLRTWR-TDLPKGACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTH  161 (197)
T ss_pred             ecCCcEEEEEEeeCCCCCCCceEEEEEEEE-ecCCCCcEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEE
Confidence            543 2233332 110 01000111110000 001111  33444442       3333  56799999999888999999


Q ss_pred             EEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 008769          273 SVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY  307 (554)
Q Consensus       273 ~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~r  307 (554)
                      .++++|+  |.+|.|++|..- .-+...|..||+-
T Consensus       162 ~~~~Dp~--G~iP~wl~N~~~-~~~~~~~~~l~~~  193 (197)
T cd08869         162 ICRVDLR--GRSPEWYNKVYG-HLCARELLRIRDS  193 (197)
T ss_pred             EEEECCC--CCCCceeecchH-hHHHHHHHHHHhh
Confidence            9999994  789999965554 7788899999863

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins

Probab=99.18  E-value=3.2e-10  Score=111.40  Aligned_cols=158  Identities=9%  Similarity=0.049  Sum_probs=112.6

Q ss_pred             CCceeecccccCCCCcccceEEEeeecccccc-CCceEEEEEEEEEc-CCHHHHHHHHhCcCcccccCcCCcEEEEEEec
Q 008769          130 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLEN-GGVHRCVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSRE  207 (554)
Q Consensus       130 ~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~-~g~~r~V~asI~I~-APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~  207 (554)
                      ++|++..+.+||       +||.|      .+ +.+...+++..+++ ++++++++++.|.+.+++|.+.|.++  ++..
T Consensus        25 ~~W~l~~~~~~i-------~Vy~r------~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~--~~~~   89 (207)
T cd08910          25 AAWELLVESSGI-------SIYRL------LDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKEL--YEKE   89 (207)
T ss_pred             CCeEEEEecCCe-------EEEEe------ccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHhh--eeec
Confidence            479999999999       99999      33 34467899999998 79999999999999999999999873  4332


Q ss_pred             C-CEEEEEEE--------eccceeEEEEEEEEEEEEeecCCCeEE-----------EEEEecCCc--eeEEEEEEEEcCC
Q 008769          208 N-NKVRILQE--------GCKGLLYMVLHARVVMDICEQHEQEIS-----------FEQVEGDFD--SFQGKWLFEQLGS  265 (554)
Q Consensus       208 g-~~vrv~q~--------g~~gil~~~~~~rvvLdv~E~~~rrIs-----------f~~veGdfr--~f~G~W~Leplgd  265 (554)
                      . +...+++.        .++.++...+.     .. ...++.+.           +...+|.++  .+.|.|.|++.++
T Consensus        90 ~~~~~i~y~~~k~PwPvs~RD~V~~r~~~-----~~-~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~  163 (207)
T cd08910          90 CDGETVIYWEVKYPFPLSNRDYVYIRQRR-----DL-DVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGK  163 (207)
T ss_pred             CCCCEEEEEEEEcCCCCCCceEEEEEEec-----cc-cCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCC
Confidence            2 22222221        12211100000     00 00111110           111223343  7899999999988


Q ss_pred             CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          266 HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       266 G~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      ++|.++|..+.+|  +|.||.+++|.+..+.++.+|++|+..+.+
T Consensus       164 ~~t~i~~~~~~DP--gG~IP~wlvN~~~~~~~~~~l~~l~ka~~~  206 (207)
T cd08910         164 KGSKVFMYYFDNP--GGMIPSWLINWAAKNGVPNFLKDMQKACQN  206 (207)
T ss_pred             CceEEEEEEEeCC--CCcchHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence            8899999999999  478999999999999999999999998864

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.

>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins

Probab=99.15  E-value=9.7e-10  Score=110.80  Aligned_cols=153  Identities=7%  Similarity=0.019  Sum_probs=104.0

Q ss_pred             CCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC
Q 008769          129 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN  208 (554)
Q Consensus       129 ~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g  208 (554)
                      .++|.+.++.+||       .||.+      +. .....+++++.|++|+++|+++|.|.+++++|.++|.+++++++-+
T Consensus        58 ~~~W~l~~~~~gI-------~Vyt~------~~-s~~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id  123 (240)
T cd08913          58 KDNWVLSSEKNQV-------RLYTL------EE-DKFLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVD  123 (240)
T ss_pred             cCCCEEEEccCCE-------EEEEE------eC-CCccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecC
Confidence            3589999999999       99997      32 2335778899999999999999999999999999999999998854


Q ss_pred             CEEEEEEEeccc----eeEEEEEEEEEEEEeecCCC-e-EEEEEEe--------cCCc--eeEEEEEEEEcCCCeEEEEE
Q 008769          209 NKVRILQEGCKG----LLYMVLHARVVMDICEQHEQ-E-ISFEQVE--------GDFD--SFQGKWLFEQLGSHHTLLKY  272 (554)
Q Consensus       209 ~~vrv~q~g~~g----il~~~~~~rvvLdv~E~~~r-r-Isf~~ve--------Gdfr--~f~G~W~LeplgdG~TrVtY  272 (554)
                      ....+++.-...    +-..-|.........+..+. . |..+++.        |.++  .+.|.|.|.+.+++.|+|+|
T Consensus       124 ~~~~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY  203 (240)
T cd08913         124 EDDAIYHVTSPSLSGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSY  203 (240)
T ss_pred             CCcEEEEEecCCCCCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEE
Confidence            323344421111    00000111100000000110 0 2222222        2222  67899999999999999999


Q ss_pred             EEEEEeccCccchHHHHHHHHHhhHH
Q 008769          273 SVESKMQKNSLLSEAIMEEVIYEDLP  298 (554)
Q Consensus       273 ~v~~eP~~gg~LP~~Lver~vre~l~  298 (554)
                      ..+.+|  | .||.++++.++.+...
T Consensus       204 ~~~~dP--G-~LP~~~~N~~~~~~p~  226 (240)
T cd08913         204 YNQATP--G-VLPYISTDIAGLSSEF  226 (240)
T ss_pred             EEEeCC--c-cccHHHhhhhhhccch
Confidence            999887  3 7999999998887553

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of

>COG5637 Predicted integral membrane protein [Function unknown]

Probab=99.14  E-value=4.5e-10  Score=107.70  Aligned_cols=139  Identities=18%  Similarity=0.223  Sum_probs=107.2

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEE
Q 008769          165 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  244 (554)
Q Consensus       165 ~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf  244 (554)
                      ...++.+++|++|+++||++..|+|++|.||.++.+++|+....   ..|..+.-..+.+.|.++++-+   .++.+|.|
T Consensus        69 ~i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr---SrW~~~ap~g~~v~Wea~it~d---~~~e~I~W  142 (217)
T COG5637          69 PIEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR---SRWKANAPLGLEVEWEAEITKD---IPGERIQW  142 (217)
T ss_pred             ceEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc---cceeEcCCCCceEEEeehhhcc---CCCcEEee
Confidence            44578899999999999999999999999999999999996543   3344433233457888886533   47889999


Q ss_pred             EEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHH----HhhHHHHHHHHHHHHHhh
Q 008769          245 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVI----YEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       245 ~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~v----re~l~~~L~ALR~rAEr~  311 (554)
                      +.++|.--...|.-+|++..+..|.|+..+.+.|.  +++...++++++    .+.+.+.|+.||..+|..
T Consensus       143 ~Sl~Ga~v~NsG~VrF~~~pg~~t~V~v~lsY~~P--gg~~~a~va~~fgeepeqqI~~DL~RFk~~~e~~  211 (217)
T COG5637         143 ESLPGARVENSGAVRFYDAPGDSTEVKVTLSYRPP--GGLLGAVVAKLFGEEPEQQIQDDLERFKEYQENG  211 (217)
T ss_pred             ecCCCCcCCCCccEEeeeCCCCceEEEEEEEecCC--ccHHHHHHHHHhccchHHHHHHHHHHHHHHHHcc
Confidence            99999544668999999987778999999999984  344455555554    456677788888887763

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=99.11  E-value=8.1e-09  Score=96.57  Aligned_cols=160  Identities=12%  Similarity=0.193  Sum_probs=112.7

Q ss_pred             CCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCC
Q 008769          130 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN  209 (554)
Q Consensus       130 ~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~  209 (554)
                      .+|+..++.+|+       +||.+..+     ..+...+++..+|++|+++|++++.|.+.++.|.+.|..+++++..++
T Consensus        15 ~~W~~~~~~~~v-------~vy~~~~~-----~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~   82 (193)
T cd00177          15 EGWKLVKEKDGV-------KIYTKPYE-----DSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDE   82 (193)
T ss_pred             CCeEEEEECCcE-------EEEEecCC-----CCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCC
Confidence            389999999999       99999533     235788999999999999999999999999999999999999988654


Q ss_pred             EE-EEEEEeccc--ee--EEEEEEEEEEEEeecCCCeEEE--EEEe--------cCCc--eeEEEEEEEEcCCCeEEEEE
Q 008769          210 KV-RILQEGCKG--LL--YMVLHARVVMDICEQHEQEISF--EQVE--------GDFD--SFQGKWLFEQLGSHHTLLKY  272 (554)
Q Consensus       210 ~v-rv~q~g~~g--il--~~~~~~rvvLdv~E~~~rrIsf--~~ve--------Gdfr--~f~G~W~LeplgdG~TrVtY  272 (554)
                      .. .++..-...  +-  .+.+... . .  ...+..+.+  ..++        |.++  .+.+.|.|++.+++.|+++|
T Consensus        83 ~~~i~~~~~~~p~p~~~Rdfv~~~~-~-~--~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~  158 (193)
T cd00177          83 HTDIIYYKTKPPWPVSPRDFVYLRR-R-R--KLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTY  158 (193)
T ss_pred             CeEEEEEEeeCCCccCCccEEEEEE-E-E--EcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEE
Confidence            32 222211000  00  0111111 0 0  011222222  2221        2222  33677999999888999999


Q ss_pred             EEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 008769          273 SVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY  307 (554)
Q Consensus       273 ~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~r  307 (554)
                      ..+++|+  +.+|.++++..+...+...++.++..
T Consensus       159 ~~~~D~~--g~iP~~~~~~~~~~~~~~~~~~~~~~  191 (193)
T cd00177         159 VLQVDPK--GSIPKSLVNSAAKKQLASFLKDLRKA  191 (193)
T ss_pred             EEeeCCC--CCccHHHHHhhhhhccHHHHHHHHHh
Confidence            9999995  67999999999998888888777653

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins

Probab=99.08  E-value=3.4e-09  Score=106.52  Aligned_cols=135  Identities=13%  Similarity=0.079  Sum_probs=94.6

Q ss_pred             CCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC
Q 008769          129 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN  208 (554)
Q Consensus       129 ~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g  208 (554)
                      .++|++..+.+||       +||+|      + +.+...++++..|++|+++|+++|.|.+++++|.+++.+++++++-+
T Consensus        54 ~~~W~l~~~k~gI-------kVytr------~-~s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id  119 (235)
T cd08873          54 KSDWTVASSTTSV-------TLYTL------E-QDGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVG  119 (235)
T ss_pred             cCCCEEEEcCCCE-------EEEEe------c-CCCceEEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeC
Confidence            3599999999999       99999      3 45566789999999999999999999999999999999999998755


Q ss_pred             CEEE-EEEEeccc---eeEEEEEEEEEEEEeecCCC--eEEEEEEe--------cCCc--eeEEEEEEEEcCCCeEEEEE
Q 008769          209 NKVR-ILQEGCKG---LLYMVLHARVVMDICEQHEQ--EISFEQVE--------GDFD--SFQGKWLFEQLGSHHTLLKY  272 (554)
Q Consensus       209 ~~vr-v~q~g~~g---il~~~~~~rvvLdv~E~~~r--rIsf~~ve--------Gdfr--~f~G~W~LeplgdG~TrVtY  272 (554)
                      +... +++. ...   +-..-|............+.  .|.++.+.        |.++  .+.|.|.|+|+++++|.|+|
T Consensus       120 ~d~~iyy~~-~p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY  198 (235)
T cd08873         120 EDDGIYHTT-MPSLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSY  198 (235)
T ss_pred             CCcEEEEEE-cCCCCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEE
Confidence            4333 3332 111   00001111100000001111  23444444        2233  78899999999988999999


Q ss_pred             EEEEEe
Q 008769          273 SVESKM  278 (554)
Q Consensus       273 ~v~~eP  278 (554)
                      ..+++|
T Consensus       199 ~~~~dP  204 (235)
T cd08873         199 YNETNP  204 (235)
T ss_pred             EEEcCC
Confidence            999998

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an

>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains

Probab=99.08  E-value=3.3e-09  Score=106.48  Aligned_cols=171  Identities=13%  Similarity=0.167  Sum_probs=117.7

Q ss_pred             CceeecccccCCCCcccceEEEeeeccccccCCc-eEEEEEEEEEc-CCHHHHHHHHhCcCcccccCcCCcEEEEEEecC
Q 008769          131 KWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGV-HRCVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSREN  208 (554)
Q Consensus       131 ~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~-~r~V~asI~I~-APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g  208 (554)
                      +|++..+.+||       +||.|..+    .++. ...+++..+|+ ++++++.+++.|.+.+++|...|.+++++++-+
T Consensus        27 ~W~l~~~~~gi-------kVy~r~~~----~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~   95 (235)
T cd08872          27 GWQLFAEEGEM-------KVYRREVE----EDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLS   95 (235)
T ss_pred             CCEEEEeCCce-------EEEEEECC----CCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecC
Confidence            89999999999       99999322    1222 22689999999 999999999999999999999999999998743


Q ss_pred             -CEEEEEEE--------eccceeEEEEEE------------EEEEEEe-e---cCC--CeEEEEEEe----c-CCceeEE
Q 008769          209 -NKVRILQE--------GCKGLLYMVLHA------------RVVMDIC-E---QHE--QEISFEQVE----G-DFDSFQG  256 (554)
Q Consensus       209 -~~vrv~q~--------g~~gil~~~~~~------------rvvLdv~-E---~~~--rrIsf~~ve----G-dfr~f~G  256 (554)
                       +...+++.        .++.++...+..            .+++... +   .|+  ..++.....    + .+..-.|
T Consensus        96 ~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g  175 (235)
T cd08872          96 QDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDG  175 (235)
T ss_pred             CCCEEEEEEccCCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCC
Confidence             33334442        222221111110            0111100 0   011  222222111    1 1112237


Q ss_pred             EEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCC
Q 008769          257 KWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDN  315 (554)
Q Consensus       257 ~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~~~  315 (554)
                      .|.+++ ++++|+|+|..+++|  +|++|.++++.+.+..++..|+.|-..+.....++
T Consensus       176 ~~~~t~-~~~~~~ity~~~~dP--gG~iP~wvvn~~~k~~~P~~l~~~~~~~~~~~~~~  231 (235)
T cd08872         176 NQEITR-DNILCKITYVANVNP--GGWAPASVLRAVYKREYPKFLKRFTSYVQEKTKGK  231 (235)
T ss_pred             cccccC-CCCeEEEEEEEEeCC--CCCccHHHHHHHHHhhchHHHHHHHHHHHHhcCCC
Confidence            799988 577999999999999  57899999999999999999999999988766553

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg

>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins

Probab=99.07  E-value=1.5e-09  Score=109.03  Aligned_cols=142  Identities=15%  Similarity=0.167  Sum_probs=96.6

Q ss_pred             CCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC
Q 008769          129 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN  208 (554)
Q Consensus       129 ~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g  208 (554)
                      .++|.+..+.+||       +||++      + +.....+++++++++|+++++++|.|++++++|.++|.+++++++.+
T Consensus        55 ~~~W~l~~dkdgI-------kVytr------~-~s~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld  120 (236)
T cd08914          55 KSGWEVTSTVEKI-------KIYTL------E-EHDVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVS  120 (236)
T ss_pred             cCCCEEEEccCCE-------EEEEe------c-CCCcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeC
Confidence            4699999999999       99999      3 33357899999999999999999999999999999999999998844


Q ss_pred             CEEEEEEEeccceeEEEEEEEEEEEEee---c-CCC--eEEEEEEe--------cCCc--e-eEEEEEEEEcCCCeEEEE
Q 008769          209 NKVRILQEGCKGLLYMVLHARVVMDICE---Q-HEQ--EISFEQVE--------GDFD--S-FQGKWLFEQLGSHHTLLK  271 (554)
Q Consensus       209 ~~vrv~q~g~~gil~~~~~~rvvLdv~E---~-~~r--rIsf~~ve--------Gdfr--~-f~G~W~LeplgdG~TrVt  271 (554)
                      ..-.+++.-.....++.=. .+++....   . .+.  .|..+.+.        |.++  . +.|. .|+|+++++|+|+
T Consensus       121 ~~~~vY~~~~pPw~Pvk~R-D~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~Vt  198 (236)
T cd08914         121 EDDQIYHITCPIVNNDKPK-DLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVS  198 (236)
T ss_pred             CCcCEEEEecCCCCCCCCc-eEEEEEEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEE
Confidence            3222444211110000000 11111110   1 111  12223332        2232  3 6787 9999999999999


Q ss_pred             EEEEEEeccCccchHHHH
Q 008769          272 YSVESKMQKNSLLSEAIM  289 (554)
Q Consensus       272 Y~v~~eP~~gg~LP~~Lv  289 (554)
                      |..+++|   |++|-+.+
T Consensus       199 Y~~~~dP---g~lp~~~~  213 (236)
T cd08914         199 YFNQISA---SILPYFAG  213 (236)
T ss_pred             EEEEcCC---ccchheEE
Confidence            9999998   57898763

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.

>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins

Probab=99.06  E-value=1.4e-08  Score=98.97  Aligned_cols=162  Identities=14%  Similarity=0.099  Sum_probs=113.5

Q ss_pred             CCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhC--cCcccccCcCCcEEEEEEec
Q 008769          130 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTA--YETLPEIVPNLAISKILSRE  207 (554)
Q Consensus       130 ~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTD--yE~yPewiP~V~sSrVL~r~  207 (554)
                      .+|.+.++.+||       +||.++..     +...+.++++.+|++++++|+++|.|  .+..+.|.+.|.+++++++-
T Consensus        22 ~~W~~~~~~~~i-------~v~~~~~~-----~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~i   89 (206)
T cd08867          22 DGWKVLKTVKNI-------TVSWKPST-----EFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKI   89 (206)
T ss_pred             CCcEEEEcCCCc-------EEEEecCC-----CCCCEEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEe
Confidence            589999999999       99999322     11236689999999999999999999  89999999999999999885


Q ss_pred             CC-EEEEEEEecc---cee-EEEEEEEEEEEEe-ecCCC--eEEEEEE--------ecCCc--eeEEEEEEEEcC--CCe
Q 008769          208 NN-KVRILQEGCK---GLL-YMVLHARVVMDIC-EQHEQ--EISFEQV--------EGDFD--SFQGKWLFEQLG--SHH  267 (554)
Q Consensus       208 g~-~vrv~q~g~~---gil-~~~~~~rvvLdv~-E~~~r--rIsf~~v--------eGdfr--~f~G~W~Leplg--dG~  267 (554)
                      +. ...++.....   +++ ..-|.   .+... ...+.  .+....+        .|.++  ...|-|.++|.+  +++
T Consensus        90 d~~~~i~~~~~p~~~~~~vs~RDfV---~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~  166 (206)
T cd08867          90 SEDLCVGRTITPSAAMGLISPRDFV---DLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDK  166 (206)
T ss_pred             CCCeEEEEEEccccccCccCCcceE---EEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCc
Confidence            43 3233332100   000 00010   00000 01111  1222333        23333  457889999874  467


Q ss_pred             EEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 008769          268 TLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  308 (554)
Q Consensus       268 TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rA  308 (554)
                      |.++|.++++|+  |.+|.++++..+.+.+...+.+||.++
T Consensus       167 t~~~~~~~~Dpk--G~iP~~lvn~~~~~~~~~~~~~lr~~~  205 (206)
T cd08867         167 SFLVLYVQTDLR--GMIPQSLVESAMPSNLVNFYTDLVKGV  205 (206)
T ss_pred             eEEEEEEEeccC--CCCcHHHHHhhhhhhHHHHHHHHHHhc
Confidence            999999999995  689999999999999999999999874

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression

>smart00234 START in StAR and phosphatidylcholine transfer protein

Probab=99.02  E-value=1.4e-08  Score=97.74  Aligned_cols=167  Identities=14%  Similarity=0.073  Sum_probs=115.5

Q ss_pred             CCceeecc-cccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHH-HHHHHhCcCcccccCcCCcEEEEEEec
Q 008769          130 SKWGVFGQ-VCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSE-VWNVMTAYETLPEIVPNLAISKILSRE  207 (554)
Q Consensus       130 ~~W~~~~~-~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~-VWaVLTDyE~yPewiP~V~sSrVL~r~  207 (554)
                      .+|.+..+ .+|+       .+|-+..+    .+.....+++...|+++++. +-.++.|.+..++|.+.|.++++++.-
T Consensus        19 ~~W~~~~~~~~~~-------~~~~~~~~----~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~   87 (206)
T smart00234       19 PGWVLSSENENGD-------EVRSILSP----GRSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVI   87 (206)
T ss_pred             CccEEccccCCcc-------eEEEEccC----CCCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEE
Confidence            48999997 7888       88888322    01247889999999999996 778999999999999999999999874


Q ss_pred             CCE--EEEEEEeccc-ee-EEEEEEEEEEEEeecCCC--eEEEEEEe--------cCCc--eeEEEEEEEEcCCCeEEEE
Q 008769          208 NNK--VRILQEGCKG-LL-YMVLHARVVMDICEQHEQ--EISFEQVE--------GDFD--SFQGKWLFEQLGSHHTLLK  271 (554)
Q Consensus       208 g~~--vrv~q~g~~g-il-~~~~~~rvvLdv~E~~~r--rIsf~~ve--------Gdfr--~f~G~W~LeplgdG~TrVt  271 (554)
                      ++.  +..+...... .+ ..-|.......  ...+.  .|....+.        |.++  .+.|.|.++|.+++.|+|+
T Consensus        88 ~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~--~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt  165 (206)
T smart00234       88 DNGTVIYHYVSKFVAGPVSPRDFVFVRYWR--ELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVT  165 (206)
T ss_pred             CCCCeEEEEEEecccCcCCCCeEEEEEEEE--EcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEE
Confidence            432  2222111110 11 00011100000  11111  22222222        2233  5788999999998889999


Q ss_pred             EEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          272 YSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       272 Y~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      |..+.+|+  |++|.++++.++...+..+++.+++.++..
T Consensus       166 ~~~~~D~~--G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~  203 (206)
T smart00234      166 WVSHADLK--GWLPHWLVRSLIKSGLAEFAKTWVATLQKH  203 (206)
T ss_pred             EEEEEecC--CCccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence            99999994  679999999999999999999998887653

putative lipid-binding domain in StAR and phosphatidylcholine transfer protein

>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

Probab=98.85  E-value=3.1e-07  Score=85.45  Aligned_cols=112  Identities=17%  Similarity=0.423  Sum_probs=82.8

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCc-c-cccCcCCcEEEEEEecC--CEEEEEEEeccceeEEEEEEEEEEEEeecCCCeE
Q 008769          167 CVVASITVKAPVSEVWNVMTAYET-L-PEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI  242 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~-y-PewiP~V~sSrVL~r~g--~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrI  242 (554)
                      .++.++.|+||+++||+++.|+.+ + +.|.|.+.++++++.++  +.++.+..+..+ -...+..+  ++..+...+++
T Consensus         2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~-~~~~~kE~--l~~~D~~~~~~   78 (148)
T cd07816           2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGG-KVKYVKER--IDAVDEENKTY   78 (148)
T ss_pred             cEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCC-cceEEEEE--EEEEcccccEE
Confidence            468899999999999999999994 5 56889999999987643  234544432222 11123333  33344457899


Q ss_pred             EEEEEecCC-----ceeEEEEEEEEcCCCeEEEEEEEEEEeccC
Q 008769          243 SFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKN  281 (554)
Q Consensus       243 sf~~veGdf-----r~f~G~W~LeplgdG~TrVtY~v~~eP~~g  281 (554)
                      .|++++|++     +.+.++.+|.+.++++|.++|.+.|++..+
T Consensus        79 ~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~  122 (148)
T cd07816          79 KYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGD  122 (148)
T ss_pred             EEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCC
Confidence            999999864     478899999999888999999999998643

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth

>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []

Probab=98.81  E-value=5.7e-07  Score=86.29  Aligned_cols=168  Identities=11%  Similarity=0.136  Sum_probs=116.8

Q ss_pred             cCCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEe-
Q 008769          128 LNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR-  206 (554)
Q Consensus       128 ~~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r-  206 (554)
                      ...+|....+..+.       .++.++.+.  .+......+++...|++++++++..+-|-..  .|.+.|.++++++. 
T Consensus        17 ~~~~W~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~   85 (206)
T PF01852_consen   17 DEDGWKLYKDKKNG-------DVYYKKVSP--SDSCPIKMFKAEGVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQI   85 (206)
T ss_dssp             TCTTCEEEEEETTT-------CEEEEEEEC--SSSTSCEEEEEEEEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEE
T ss_pred             CCCCCeEeEccCCC-------eEEEEEeCc--cccccceEEEEEEEEcCChHHHHHHHHhhHh--hcccchhhheeeeec
Confidence            34599999977777       777776441  1113677899999999999977777777666  99999999999987 


Q ss_pred             cCCEEEEEEE--ecc--ceeEEEEEEEEEEEEeec-CCC--eEEEEEEe---------cCCc--eeEEEEEEEEcCCCeE
Q 008769          207 ENNKVRILQE--GCK--GLLYMVLHARVVMDICEQ-HEQ--EISFEQVE---------GDFD--SFQGKWLFEQLGSHHT  268 (554)
Q Consensus       207 ~g~~vrv~q~--g~~--gil~~~~~~rvvLdv~E~-~~r--rIsf~~ve---------Gdfr--~f~G~W~LeplgdG~T  268 (554)
                      +++....+..  ...  .+...-|..   +..... .+.  .|.++.++         |.++  .+.+.|.|++.+++.|
T Consensus        86 ~~~~~i~~~~~~~~~~~p~~~RDfv~---~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~  162 (206)
T PF01852_consen   86 DEDTDIVYFVMKSPWPGPVSPRDFVF---LRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRT  162 (206)
T ss_dssp             ETTEEEEEEEEE-CTTTTSSEEEEEE---EEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEE
T ss_pred             CCCCeEEEEEecccCCCCCCCcEEEE---EEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCc
Confidence            4443222221  111  121111111   111111 222  34444443         2222  5678999999999899


Q ss_pred             EEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          269 LLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       269 rVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      +|+|..+++|+  |++|.++++.++...+...++.+++++++.
T Consensus       163 ~vt~~~~~D~~--G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~  203 (206)
T PF01852_consen  163 RVTYVSQVDPK--GWIPSWLVNMVVKSQPPNFLKNLRKALKKQ  203 (206)
T ss_dssp             EEEEEEEEESS--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             eEEEEEEECCC--CCChHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            99999999994  789999999999999999999999998864

StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....

>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=98.78  E-value=1.2e-07  Score=93.54  Aligned_cols=157  Identities=14%  Similarity=0.147  Sum_probs=105.9

Q ss_pred             ccCCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEe
Q 008769          127 DLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR  206 (554)
Q Consensus       127 ~~~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r  206 (554)
                      +...+|...+..+++       |++..+.+    .+...+.++++++|+|++++|+++|.|.  ++.|.++|.+++++++
T Consensus        24 ~k~k~w~~~~~~~~~-------el~~~k~~----~gs~l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~   90 (204)
T cd08908          24 EKFKGWVSYSTSEQA-------ELSYKKVS----EGPPLRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEI   90 (204)
T ss_pred             HHhcCCcccCCCCcE-------EEEEeccC----CCCCcEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEe
Confidence            445688888888888       88888644    2444789999999999999999999888  8999999999999988


Q ss_pred             cC-CEEEEEEE--------eccceeEEEEEEEEEEEEeecCCCe--EEEEEEec------CC--ceeEEEEEEEEcCCCe
Q 008769          207 EN-NKVRILQE--------GCKGLLYMVLHARVVMDICEQHEQE--ISFEQVEG------DF--DSFQGKWLFEQLGSHH  267 (554)
Q Consensus       207 ~g-~~vrv~q~--------g~~gil~~~~~~rvvLdv~E~~~rr--Isf~~veG------df--r~f~G~W~LeplgdG~  267 (554)
                      -+ +.-.+++.        .++.++...+..       ..+...  |....+..      .+  ..+.|.|.|+|.++|+
T Consensus        91 ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~-------~~~~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~  163 (204)
T cd08908          91 LDSQTEIYQYVQNSMAPHPARDYVVLRTWRT-------NLPKGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGK  163 (204)
T ss_pred             cCCCceEEEEEccCCCCCCCcEEEEEEEEEE-------eCCCCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCc
Confidence            44 33233332        222221101110       001111  11111110      11  2679999999999899


Q ss_pred             EEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHH
Q 008769          268 TLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD  306 (554)
Q Consensus       268 TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~  306 (554)
                      |+|+|..+++|+  |.+|.|++|. +-.-+...|..||+
T Consensus       164 t~vtyi~~~DPg--G~iP~W~~N~-~g~~~~~~~~~~r~  199 (204)
T cd08908         164 SKLTYMCRIDLR--GHMPEWYTKS-FGHLCAAEVVKIRD  199 (204)
T ss_pred             EEEEEEEEeCCC--CCCcHHHHhh-HHHHHHHHHHHHHh
Confidence            999999999994  6799988754 44555556666665

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.

>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]

Probab=98.75  E-value=6.5e-08  Score=94.84  Aligned_cols=146  Identities=19%  Similarity=0.196  Sum_probs=112.2

Q ss_pred             ceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCC-EEEE-EEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769          164 VHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN-KVRI-LQEGCKGLLYMVLHARVVMDICEQHEQE  241 (554)
Q Consensus       164 ~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~-~vrv-~q~g~~gil~~~~~~rvvLdv~E~~~rr  241 (554)
                      ..+..+..-.|.++|+++|++++|++.|-+|+|+|++|.|.++.++ .... ..+|+..+. ..|+..++++    ++.-
T Consensus        66 r~k~Y~errligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVGFk~l~-E~y~S~Vt~~----~p~l  140 (227)
T KOG3177|consen   66 REKAYSERRLIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVGFKPLD-ERYTSNVTCV----KPHL  140 (227)
T ss_pred             HHHHHHHHhhhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEecCcccc-hhheeeeEEe----cccc
Confidence            3555677778999999999999999999999999999999998744 2322 345777643 4666666543    4433


Q ss_pred             EEEEEEe-cCCceeEEEEEEEEcC--CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCC
Q 008769          242 ISFEQVE-GDFDSFQGKWLFEQLG--SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNS  316 (554)
Q Consensus       242 Isf~~ve-Gdfr~f~G~W~Leplg--dG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~~~~  316 (554)
                      +.-...+ +-|..+...|+|.|-.  .+.|.|.|.+.|+.+  ..|-..+..-++.+....++.||.+||...++.-.
T Consensus       141 ~kt~~~d~rLF~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~--S~lhs~va~~Ffd~V~~~~v~AF~~ra~~~~gp~~  216 (227)
T KOG3177|consen  141 TKTVCADGRLFNHLITIWSFKPGPNIPRTCTLDFSVSFEFK--SLLHSQVATIFFDEVVKQMVNAFEQRARKLYGPES  216 (227)
T ss_pred             eEEeeccccHHHhhhheeeeccCCCCCCeEEEEEEEEEEeh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence            3333344 4577999999999865  578999999999974  55666677778888889999999999999988744

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.73  E-value=3.4e-08  Score=89.06  Aligned_cols=64  Identities=44%  Similarity=0.786  Sum_probs=60.1

Q ss_pred             CCCCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769            1 MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER   64 (554)
Q Consensus         1 mv~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~   64 (554)
                      +++|+|+.|+|.|++++.+++.+|.++|++++.|...+|..|+...+++.++.+|.++|++||+
T Consensus        81 ~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~  144 (144)
T cd08866          81 MVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES  144 (144)
T ss_pred             EcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4689999999999999987656899999999999999999999999999999999999999984

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain

Probab=98.65  E-value=5.8e-07  Score=79.74  Aligned_cols=129  Identities=12%  Similarity=0.084  Sum_probs=85.7

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV  247 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~v  247 (554)
                      +..++.|+|||++||++++|.++|++|++... ...-...|+.......+. ..  ..+...+ +++  .++++|.|+..
T Consensus         2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~G~~~~~~~~~~-~~--~~~~~~v-~~~--~~~~~l~~~~~   74 (136)
T cd08893           2 FVYVTYIRATPEKVWQALTDPEFTRQYWGGTT-VESDWKVGSAFEYRRGDD-GT--VDVEGEV-LES--DPPRRLVHTWR   74 (136)
T ss_pred             eEEEEEecCCHHHHHHHHcCchhhhheecccc-cccCCcCCCeEEEEeCCC-cc--cccceEE-EEe--cCCCeEEEEEe
Confidence            56789999999999999999999999998732 122223455444332221 11  1222222 122  47788888876


Q ss_pred             ecC------CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          248 EGD------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       248 eGd------fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      .+.      ......+|.|++.++ +|+|++.....+      +...+...+..+...+|+.|++++|.
T Consensus        75 ~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~------~~~~~~~~~~~gw~~~l~~Lk~~~e~  136 (136)
T cd08893          75 AVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFP------PGSPTLEGVSGGWPAILSSLKTLLET  136 (136)
T ss_pred             cCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCC------CchhHHHhhhcCHHHHHHHHHHHhcC
Confidence            422      125677889999765 699988876532      22245667788999999999999873

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=98.64  E-value=2.8e-06  Score=78.16  Aligned_cols=133  Identities=13%  Similarity=0.147  Sum_probs=81.8

Q ss_pred             EEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEE-EeccceeEEEEEEEEEEEEeecCCCe--EEEEE
Q 008769          170 ASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ-EGCKGLLYMVLHARVVMDICEQHEQE--ISFEQ  246 (554)
Q Consensus       170 asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q-~g~~gil~~~~~~rvvLdv~E~~~rr--Isf~~  246 (554)
                      .+..|++|+++||++|+|++++..-+|+|.+.+.+.   +...... .+... +...|..++.+.-.. ++..  +.++-
T Consensus         1 Gs~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~---~~~~~~~~v~vG~-i~~~~~g~~~~~~~~-~~~~~~~~~~g   75 (140)
T PF06240_consen    1 GSFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG---DEYKGKVKVKVGP-IKGTFDGEVRITEID-PPESYTLEFEG   75 (140)
T ss_dssp             EEEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC---TEEEEEEEEESCC-CEEEEEEEEEEEEEE-TTTEEEEEEEE
T ss_pred             CcEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC---cEEEEEEEEEecc-EEEEEEEEEEEEEcC-CCcceEeeeec
Confidence            468899999999999999999999999999999875   4333222 23333 335566555443222 3333  55554


Q ss_pred             EecCC-ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          247 VEGDF-DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       247 veGdf-r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      ..... -...+.-++...+++.|+|+|+.+++..  + ....+.++++....+.+++.|-+.+++
T Consensus        76 ~g~~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~--G-~la~~g~~~i~~~~~~l~~~f~~~l~~  137 (140)
T PF06240_consen   76 RGRGGGSSASANITLSLEDDGGTRVTWSADVEVG--G-PLASLGQRLIESVARRLIEQFFENLER  137 (140)
T ss_dssp             EECTCCEEEEEEEEEEECCCTCEEEEEEEEEEEE--C-HHHHC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCccceEEEEEEEEEcCCCCCcEEEEEEEEEEc--c-CHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            43221 1334444555544555999999999974  3 344456666666666666666555543

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=98.63  E-value=1.6e-06  Score=81.49  Aligned_cols=134  Identities=14%  Similarity=0.147  Sum_probs=89.8

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV  247 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~v  247 (554)
                      ++.+..|++||++||+.|+|.|.+.+-+|.|.+++..   +++.....+-.-+.+-.+|..++.+.....+++.+...-.
T Consensus         3 ~~G~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~---g~e~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~g~   79 (146)
T COG3427           3 YEGTFRVAAPPEAVWEFLNDPEQVAACIPGVQSVETN---GDEYTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSITINGS   79 (146)
T ss_pred             ccceEEecCCHHHHHHHhcCHHHHHhhcCCcceeeec---CCeEEEEEEEeecceeEEEEEEEEEccccCCCcEEEEEee
Confidence            5788999999999999999999999999999999864   3343332221222333456666554433356677766543


Q ss_pred             ec---CCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 008769          248 EG---DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  308 (554)
Q Consensus       248 eG---dfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rA  308 (554)
                      -|   -+..+.....+++.+++ |+|.|.++.+..   .+...+..+.++..++.++..+-+.+
T Consensus        80 G~~~~g~~~~~~~v~l~~~g~g-t~v~w~~~~~~g---g~laqlGsr~i~~~~~kli~~~~~~l  139 (146)
T COG3427          80 GGGAAGFADGTVDVQLEPSGEG-TRVNWFADANVG---GKLAQLGSRLIDSVARKLINRFFDCL  139 (146)
T ss_pred             cccccceeeeeeEEEEEEcCCC-cEEEEEEEcccc---HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            21   33466777789998876 999999998862   24455666666665555555444433

>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.60  E-value=4.2e-07  Score=84.86  Aligned_cols=133  Identities=13%  Similarity=0.065  Sum_probs=90.1

Q ss_pred             CCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769          162 GGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  241 (554)
Q Consensus       162 ~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr  241 (554)
                      .++.+.|..+++|+||+++||++|+|.+++++|++..   ....+.|+..+....+. +.  ..+...++ +  ..++++
T Consensus         7 ~~~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~---~~~~~~G~~~~~~~~~~-~~--~~~~~~v~-e--~~p~~~   77 (157)
T cd08899           7 LDGGATLRFERLLPAPIEDVWAALTDPERLARWFAPG---TGDLRVGGRVEFVMDDE-EG--PNATGTIL-A--CEPPRL   77 (157)
T ss_pred             cCCCeEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCC---CCCcccCceEEEEecCC-CC--CccceEEE-E--EcCCcE
Confidence            3556789999999999999999999999999999943   12223344433322221 11  12222221 1  246778


Q ss_pred             EEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 008769          242 ISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  312 (554)
Q Consensus       242 Isf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~  312 (554)
                      |.|....++ ......|+|++.+ ++|+|+|..++.+.  .     .....+..+....|..|++++|+..
T Consensus        78 l~~~~~~~~-~~~~~~~~l~~~~-~gT~v~~~~~~~~~--~-----~~~~~~~~GW~~~L~~Lk~~~e~~~  139 (157)
T cd08899          78 LAFTWGEGG-GESEVRFELAPEG-DGTRLTLTHRLLDE--R-----FGAGAVGAGWHLCLDVLEAALEGGP  139 (157)
T ss_pred             EEEEecCCC-CCceEEEEEEEcC-CCEEEEEEEeccCc--h-----hhhhhhcccHHHHHHHHHHHHcCCC
Confidence            988877655 3446788899876 56999999887542  1     2346667888999999999988653

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins

Probab=98.55  E-value=6.2e-06  Score=81.51  Aligned_cols=162  Identities=14%  Similarity=0.119  Sum_probs=111.7

Q ss_pred             CCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEe-cC
Q 008769          130 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR-EN  208 (554)
Q Consensus       130 ~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r-~g  208 (554)
                      ++|++.++.+++       .||.+-+.   +  ...+..+++.+|+++++.||+++.|.+.-.+|.+.|.+.+++++ ++
T Consensus        22 ~gWk~~k~~~~~-------~v~~k~~~---~--~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~   89 (204)
T cd08904          22 SGWKVVKTSKKI-------TVSWKPSR---K--YHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDS   89 (204)
T ss_pred             cCCeEEecCCce-------EEEEEEcC---C--CCceEEEEEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCC
Confidence            699999999999       99998433   2  22377889999999999999999999999999999999999988 44


Q ss_pred             CEEEEEEEec--c-cee-EEEEEEEEEEEEeec-CCCe--EEEEEEe--------cCCc--eeEEEEEEEEcCCC--eEE
Q 008769          209 NKVRILQEGC--K-GLL-YMVLHARVVMDICEQ-HEQE--ISFEQVE--------GDFD--SFQGKWLFEQLGSH--HTL  269 (554)
Q Consensus       209 ~~vrv~q~g~--~-gil-~~~~~~rvvLdv~E~-~~rr--Isf~~ve--------Gdfr--~f~G~W~LeplgdG--~Tr  269 (554)
                      +....+.+..  . +++ +.-|..   ++.... .+..  +....++        |.++  ..-+-|.+.|++++  .|.
T Consensus        90 ~T~I~~~~~~~~~~~~vspRDfV~---vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~  166 (204)
T cd08904          90 DTFICHTITQSFAMGSISPRDFVD---LVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSK  166 (204)
T ss_pred             CcEEEEEecccccCCcccCceEEE---EEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceE
Confidence            4444443211  1 111 001111   101000 1111  1122222        2232  23467889998653  799


Q ss_pred             EEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 008769          270 LKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  308 (554)
Q Consensus       270 VtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rA  308 (554)
                      ++|-+..+|+  |+||.++++.++...+......|+..+
T Consensus       167 l~~~~~~Dlk--G~lP~~vv~~~~~~~~~~f~~~~~~~~  203 (204)
T cd08904         167 LVMFVQPELR--GNLSRSVIEKTMPTNLVNLILDAKDGI  203 (204)
T ss_pred             EEEEEEeCCC--CCCCHHHHHHHhHHHHHHHHHHHHHhc
Confidence            9999999995  789999999999999998888887653

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.

>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp

Probab=98.47  E-value=2.6e-07  Score=82.02  Aligned_cols=59  Identities=29%  Similarity=0.558  Sum_probs=56.4

Q ss_pred             CCCCCCcceeeeEEeeecCC---CCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHH
Q 008769            1 MVDGDFKKFEGKWSIKSGTR---SSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALA   59 (554)
Q Consensus         1 mv~GDF~~f~G~W~l~~~~~---~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~   59 (554)
                      |++|+|+.|+|.|++++..+   +.+|.++|++.++|...+|..++...++++++.||.|+|
T Consensus        69 ~~~g~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (130)
T PF03364_consen   69 QISGPFKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR  130 (130)
T ss_dssp             SSETTEEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCchhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence            57899999999999999987   888999999999999999999999999999999999986

are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....

>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.37  E-value=2.2e-05  Score=71.41  Aligned_cols=134  Identities=17%  Similarity=0.181  Sum_probs=85.6

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcC----CcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS  243 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~----V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIs  243 (554)
                      +..+..|+||+++||++++|.+.+.+|++.    +..+.+-.+.|+..++...+..+.. +..... ++++  .++++|.
T Consensus         2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~-v~e~--~p~~~l~   77 (139)
T cd08894           2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVMHGPDGTD-YPNRIV-FLEI--EPPERIV   77 (139)
T ss_pred             EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEEECCCCCE-ecceEE-EEEE--cCCCEEE
Confidence            567889999999999999999999999852    2223333345555444333323321 222222 2333  4788999


Q ss_pred             EEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          244 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       244 f~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      |+...++ ....-+|+|++.+ ++|+|++...+...  . .-...+...+..+...+|..|++.+++
T Consensus        78 ~t~~~~~-~~~~v~~~~~~~~-~gT~ltl~~~~~~~--~-~~~~~~~~~~~~Gw~~~l~~L~~~l~~  139 (139)
T cd08894          78 YDHGSGP-PRFRLTVTFEEQG-GKTRLTWRQVFPTA--A-ERCEKIKFGAVEGNEQTLDRLAAYLAR  139 (139)
T ss_pred             EEeccCC-CcEEEEEEEEECC-CCEEEEEEEEcCCH--H-HHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence            9875442 2346788999977 57999998764320  0 001123456778888999999988764

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.35  E-value=1.3e-05  Score=71.99  Aligned_cols=131  Identities=19%  Similarity=0.194  Sum_probs=80.4

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEE
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ  246 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~  246 (554)
                      .|+.++.|+||+++||++++|.++|++|++... .......+....+...+...   ..+...+ +++  .++++|.|..
T Consensus         2 ~i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~~~~g~~~~~~~~~---~~~~~~i-~~~--~p~~~l~~~~   74 (145)
T cd08898           2 RIERTILIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVGEGATGEITYPGYEH---GVFPVTV-VEV--DPPRRFSFRW   74 (145)
T ss_pred             eeEEEEEecCCHHHHHHHhcChhhhhhcccccC-CCcccCCcceeEEecCCCCc---cceEEEE-EEe--CCCcEEEEEe
Confidence            378899999999999999999999999999753 11111111111222112111   1122221 122  4778898886


Q ss_pred             EecC---------CceeEEEEEEEEcCCCeEEEEEEEE-EEeccCccch-HH--HHHHHHHhhHHHHHHHHHHHHHh
Q 008769          247 VEGD---------FDSFQGKWLFEQLGSHHTLLKYSVE-SKMQKNSLLS-EA--IMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       247 veGd---------fr~f~G~W~LeplgdG~TrVtY~v~-~eP~~gg~LP-~~--Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      ..+.         -......|+|++.++ +|+|++... +..     .+ ..  .....+..+-..+|..|++.+|.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gT~vt~~~~~~~~-----~~~~~~~~~~~~~~~gw~~~l~~L~~~le~  145 (145)
T cd08898          75 HPPAIDPGEDYSAEPSTLVEFTLEPIAG-GTLLTVTESGFDA-----LPAERRAEAYRMNEGGWDEQLENLVAYVEA  145 (145)
T ss_pred             cCCCcccccccCCCCceEEEEEEEecCC-cEEEEEEEcCCCC-----CChHHHHHHHHhhhhhHHHHHHHHHHHhcC
Confidence            5432         113467889999875 699999875 221     11 11  12345778888999999998763

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=98.33  E-value=1.7e-05  Score=78.68  Aligned_cols=156  Identities=15%  Similarity=0.100  Sum_probs=104.5

Q ss_pred             CCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC
Q 008769          129 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN  208 (554)
Q Consensus       129 ~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g  208 (554)
                      ..+|......++.       +++..+.+    .+...+.+++++.|+++|++|...+.+  ..++|-.++.+++++++-+
T Consensus        26 fk~w~~~~~~~~~-------e~~ykK~~----d~~~lk~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld   92 (205)
T cd08909          26 FKGWISCSSSDNT-------ELAYKKVG----DGNPLRLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLD   92 (205)
T ss_pred             hcCCcccCCcCCe-------EEEEecCC----CCCceEEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeC
Confidence            4578888888888       77777532    234478899999999999999998877  6999999999999998744


Q ss_pred             C-EEEEEEE--------eccceeEEEEEEEEEEEEeecCCC--eEEEEEEe-------cCCc--eeEEEEEEEEcCCCeE
Q 008769          209 N-KVRILQE--------GCKGLLYMVLHARVVMDICEQHEQ--EISFEQVE-------GDFD--SFQGKWLFEQLGSHHT  268 (554)
Q Consensus       209 ~-~vrv~q~--------g~~gil~~~~~~rvvLdv~E~~~r--rIsf~~ve-------Gdfr--~f~G~W~LeplgdG~T  268 (554)
                      . .-.++..        .++-++...|    +.+   .+..  .|....++       |.++  .+.+.|.++|.++|+|
T Consensus        93 ~~tdi~~y~~~~~~P~~~RD~v~~R~w----~~~---~~~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~t  165 (205)
T cd08909          93 KQTEVYQYVLNCMAPHPSRDFVVLRSW----RTD---LPKGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKS  165 (205)
T ss_pred             CCcEEEEEEeecCCCCCCCEEEEEEEE----EEe---CCCCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCE
Confidence            3 2222222        1111110111    101   1111  22333222       2222  5678899999998899


Q ss_pred             EEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 008769          269 LLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY  307 (554)
Q Consensus       269 rVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~r  307 (554)
                      +|+|-..++|+  |.+|.|+. +.+..-+...|..||+-
T Consensus       166 rvt~i~~vDpk--G~~P~W~~-n~~g~~~~~~~~~~r~s  201 (205)
T cd08909         166 RLTHICRVDLK--GHSPEWYN-KGFGHLCAAEAARIRNS  201 (205)
T ss_pred             EEEEEEEecCC--CCChHHHH-HhHHHHHHHHHHHHHhh
Confidence            99999999995  78999875 45666666777777653

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.

>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.31  E-value=1.2e-05  Score=72.55  Aligned_cols=127  Identities=18%  Similarity=0.208  Sum_probs=83.5

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcC-----CcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPN-----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI  242 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~-----V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrI  242 (554)
                      ++.++.|+||+++||++++|-+.+.+|++.     +..++.--+.|+..+....+.++-....+... ++++  .++++|
T Consensus         2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~-~~ei--~p~~~l   78 (133)
T cd08897           2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGT-YTEV--EPHKLI   78 (133)
T ss_pred             EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEEcCCCCcccccceE-EEEE--CCCCEE
Confidence            577899999999999999999999999754     23334434566665554332222111122332 2333  478999


Q ss_pred             EEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          243 SFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       243 sf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      .|+...+    ...+|+|++.+ ++|+|+...  .+     ++.. ....+..+-...|..|++.+|+
T Consensus        79 ~~~~~~~----~~v~~~l~~~~-~gT~l~l~~--~~-----~~~~-~~~~~~~GW~~~l~~L~~~le~  133 (133)
T cd08897          79 EYTMEDG----REVEVEFTEEG-DGTKVVETF--DA-----ENEN-PVEMQRQGWQAILDNFKKYVES  133 (133)
T ss_pred             EEEcCCC----CEEEEEEEECC-CCEEEEEEE--CC-----CCCC-cHHHHHHHHHHHHHHHHHHhhC
Confidence            9986432    36789999976 569998763  32     1221 3345678888999999998763

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=98.27  E-value=1.5e-06  Score=78.30  Aligned_cols=63  Identities=19%  Similarity=0.365  Sum_probs=58.6

Q ss_pred             CCCCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769            1 MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER   64 (554)
Q Consensus         1 mv~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~   64 (554)
                      +++|+|+.++|.|+++|.++ .+|.++|++++.|+..+|..|+...+++.+..+|.+++++|++
T Consensus        75 ~~~g~~~~~~g~w~~~p~~~-~~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~  137 (138)
T cd07813          75 LVDGPFKHLEGEWRFKPLGE-NACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQ  137 (138)
T ss_pred             ecCCChhhceeEEEEEECCC-CCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46899999999999999875 5699999999999999999999999999999999999999975

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=98.17  E-value=4.2e-06  Score=75.26  Aligned_cols=60  Identities=17%  Similarity=0.269  Sum_probs=53.4

Q ss_pred             CCCcceeeeEEeeecCCCCceEEEEEEEeecCC--CCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769            4 GDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRL--NFPAIFLERIIRSDLPVNLQALACRAER   64 (554)
Q Consensus         4 GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~--~~P~~lve~~~~~dlp~nL~Ai~~~ae~   64 (554)
                      |+|+.++|.|++++.++ .+|.++|.+++.|..  .|+-.++..+++++++.+|.+++++||+
T Consensus        81 ~~~~~~~g~w~~~~~~~-~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~  142 (142)
T cd08861          81 PPVASMSGEWRFEPLGG-GGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER  142 (142)
T ss_pred             CChhhheeEEEEEECCC-CcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence            89999999999999764 468999999988864  5677899999999999999999999984

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.14  E-value=0.00019  Score=65.93  Aligned_cols=134  Identities=16%  Similarity=0.139  Sum_probs=84.0

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcC----CcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS  243 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~----V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIs  243 (554)
                      +..++.|+||+++||++++|-+.+.+|++.    +..+.+--+.|+...+...+..+.. +..... ++++  .++++|.
T Consensus         2 l~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~-v~~i--~p~~~l~   77 (146)
T cd08896           2 LVLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPGGAFRTVMRGPDGEE-FPNPGC-FLEV--VPGERLV   77 (146)
T ss_pred             eEEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecCcEEEEEEECCCCCE-ecceEE-EEEE--eCCCEEE
Confidence            566789999999999999999999999873    3344555566666555443333321 222232 2333  4788898


Q ss_pred             EEEEe--c-CC-c--eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769          244 FEQVE--G-DF-D--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       244 f~~ve--G-df-r--~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE  309 (554)
                      |+..-  + .. .  ....+|+|++.+ ++|+|+.......   .-.........+..+-...|..|++.++
T Consensus        78 ~t~~~~~~~~~~~~~~~~v~~~~~~~~-~gT~Ltl~~~~~~---~~~~~~~~~~~~~~GW~~~l~~L~~~l~  145 (146)
T cd08896          78 FTDALTPGWRPAEKPFMTAIITFEDEG-GGTRYTARARHWT---EADRKQHEEMGFHDGWGTAADQLAALAE  145 (146)
T ss_pred             EEEeecCCcCCCCCCcEEEEEEEEecC-CcEEEEEEEEeCC---HHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence            87432  1 11 1  145689999976 5699988643321   0001112223356888999999998876

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins

Probab=98.11  E-value=0.00013  Score=72.13  Aligned_cols=161  Identities=10%  Similarity=0.103  Sum_probs=106.1

Q ss_pred             CceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC-C
Q 008769          131 KWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN-N  209 (554)
Q Consensus       131 ~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g-~  209 (554)
                      .|++.+...|.       .|+.+.--     .......+.+.+|+..+++||+.|.+.....+|.+++.+++|+++=+ +
T Consensus        24 ~Wkl~k~~~~~-------~v~~k~~~-----ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~d   91 (202)
T cd08902          24 EWRVAKKSKDV-------TVWRKPSE-----EFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEEN   91 (202)
T ss_pred             CcEEEEeCCCE-------EEEEecCC-----cCCCceEEEEEEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCC
Confidence            99999999988       88888422     23334455666678999999999999999999999999999998743 4


Q ss_pred             EEEE-EEEeccc--ee-EEEEEEEEEEEEee-cCCCeEEEE-EEe------cCCc--eeEEEEEEEEcCCC--eEEEEEE
Q 008769          210 KVRI-LQEGCKG--LL-YMVLHARVVMDICE-QHEQEISFE-QVE------GDFD--SFQGKWLFEQLGSH--HTLLKYS  273 (554)
Q Consensus       210 ~vrv-~q~g~~g--il-~~~~~~rvvLdv~E-~~~rrIsf~-~ve------Gdfr--~f~G~W~LeplgdG--~TrVtY~  273 (554)
                      .... +.+....  ++ +.-|..   +.... ..+..+... .++      |.++  ..=+-|.+.|+.++  .|.+++-
T Consensus        92 t~I~~yvt~~~~~~iISpRDFVd---v~~~~~~~d~~~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~  168 (202)
T cd08902          92 CCVMRYTTAGQLLNIISPREFVD---FSYTTQYEDGLLSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTGY  168 (202)
T ss_pred             cEEEEEEcccCCcCccCccceEE---EEEEEEeCCCeEEEEeeecCCCCCCCeEeecccccEEEEEECCCCCCceEEEEE
Confidence            3332 3321111  11 001111   01111 111212110 011      2222  22356899998765  5777888


Q ss_pred             EEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 008769          274 VESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  308 (554)
Q Consensus       274 v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rA  308 (554)
                      +.++++  |+||..+++.++-..+......||+++
T Consensus       169 lq~DLk--G~LPqsiIdq~~~~~~~~F~~~Lrk~~  201 (202)
T cd08902         169 IQTDLR--GMLPQSAVDTAMASTLVNFYSDLKKAL  201 (202)
T ss_pred             EEecCC--CCccHHHHHHHhhHHHHHHHHHHHHhc
Confidence            888885  789999999999999999999999875

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.

>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.08  E-value=0.00022  Score=65.39  Aligned_cols=130  Identities=15%  Similarity=0.191  Sum_probs=82.2

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCCc-EE---EEEEecCCEEEEEEEecc-------ceeEEEEEEEEEEEEee
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLA-IS---KILSRENNKVRILQEGCK-------GLLYMVLHARVVMDICE  236 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~-sS---rVL~r~g~~vrv~q~g~~-------gil~~~~~~rvvLdv~E  236 (554)
                      |+.+..|+||++.||++++|.+.+.+|++.-. .+   .+-.+.|+...+......       +.. ..+... ++++  
T Consensus         2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~-~~~~g~-v~~v--   77 (146)
T cd08895           2 DRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNT-DVFGGR-FLEL--   77 (146)
T ss_pred             EEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcE-eeeEEE-EEEE--
Confidence            56678899999999999999999999997432 22   222234554444333221       111 122222 2232  


Q ss_pred             cCCCeEEEEEEe--cCCc-eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769          237 QHEQEISFEQVE--GDFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       237 ~~~rrIsf~~ve--Gdfr-~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE  309 (554)
                      .++++|.|+..-  +... ...-+|.|++.+ ++|+|++....-       |..........+-..+|..|++.+|
T Consensus        78 ~p~~~i~~~~~~~~~~~~~~~~v~~~~~~~~-~~T~lt~~~~~~-------~~~~~~~~~~~GW~~~l~~L~~~le  145 (146)
T cd08895          78 VPNERIVYTDVFDDPSLSGEMTMTWTLSPVS-GGTDVTIVQSGI-------PDGIPPEDCELGWQESLANLAALVE  145 (146)
T ss_pred             cCCCEEEEEEEecCCCCCceEEEEEEEEecC-CCEEEEEEEeCC-------CchhhhhHHHHHHHHHHHHHHHHhc
Confidence            478889887542  2222 346788999886 569999887532       2223345777888889999988876

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.06  E-value=9.3e-05  Score=67.32  Aligned_cols=131  Identities=17%  Similarity=0.219  Sum_probs=83.3

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV  247 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~v  247 (554)
                      ++.++.|+||++.||+.++|.+.+.+|++.-...++  +.|+..........+    ..... ++++  .++++|.|+..
T Consensus         2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~--~~Gg~~~~~~~~~~~----~~~g~-~~~~--~p~~~l~~~w~   72 (136)
T cd08901           2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGRL--EEGKTVTWDWEMYGA----SVPVN-VLEI--EPNKRIVIEWG   72 (136)
T ss_pred             eeEEEEecCCHHHHHHHhcCHHHhccccccCCCccc--cCCCEEEEEEEccCC----ceEEE-EEEE--cCCCEEEEEec
Confidence            678999999999999999999999998665333332  345544333222222    11222 2233  57889998865


Q ss_pred             ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHH-HHHHHhhHHHHHHHHHHHHHhh
Q 008769          248 EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIM-EEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       248 eGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lv-er~vre~l~~~L~ALR~rAEr~  311 (554)
                      .+. ....-+|+|++.++++|+|++....-|.   .-++.+. ...+..+-..+|..|++.+|..
T Consensus        73 ~~~-~~s~v~~~l~~~~~ggT~ltl~~~~~~~---~~~~~~~~~~~~~~GW~~~L~~L~~~le~g  133 (136)
T cd08901          73 DPG-EPTTVEWTFEELDDGRTFVTITESGFPG---TDDEGLKQALGSTEGWTLVLAGLKAYLEHG  133 (136)
T ss_pred             CCC-CCEEEEEEEEECCCCcEEEEEEECCCCC---CcHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            432 1346789999987568999998653221   1122221 1224578889999999998863

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT)

Probab=98.03  E-value=0.00021  Score=62.44  Aligned_cols=121  Identities=19%  Similarity=0.223  Sum_probs=78.2

Q ss_pred             cCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEEecC---C
Q 008769          175 KAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGD---F  251 (554)
Q Consensus       175 ~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~veGd---f  251 (554)
                      +||+++||++++|.+.+..|.+ +....+..+.|+..++ .. .++- .+.+..+ ++++  .++++|.|+...++   .
T Consensus         1 ~ap~e~Vw~a~t~~~~~~~W~~-~~~~~~~~~~Gg~~~~-~~-~~g~-~~~~~~~-v~~~--~p~~~i~~~~~~~~~~~~   73 (124)
T PF08327_consen    1 DAPPERVWEALTDPEGLAQWFT-TSEAEMDFRPGGSFRF-MD-PDGG-EFGFDGT-VLEV--EPPERIVFTWRMPDDPDG   73 (124)
T ss_dssp             SSSHHHHHHHHHSHHHHHHHSE-EEEEEEECSTTEEEEE-EE-TTSE-EEEEEEE-EEEE--ETTTEEEEEEEEETSSSC
T ss_pred             CcCHHHHHHHHCCHhHHhhccC-CCcceeeeecCCEEEE-Ee-cCCC-CceeeEE-EEEE--eCCEEEEEEEEccCCCCC
Confidence            5999999999999999999921 2222333345555555 22 3332 1233333 2233  47889999865443   2


Q ss_pred             ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769          252 DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       252 r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE  309 (554)
                      ....-+|.|++ .+++|+|++....-+      +.......+..+...+|..|++.+|
T Consensus        74 ~~~~v~~~~~~-~~~~T~l~~~~~~~~------~~~~~~~~~~~gw~~~l~~L~~~lE  124 (124)
T PF08327_consen   74 PESRVTFEFEE-EGGGTRLTLTHSGFP------DDDEEEEGMEQGWEQMLDRLKAYLE  124 (124)
T ss_dssp             EEEEEEEEEEE-ETTEEEEEEEEEEEH------SHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEEE-cCCcEEEEEEEEcCC------ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence            36678889999 556899999885332      1222222288899999999998876

This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....

>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.99  E-value=0.00045  Score=63.04  Aligned_cols=133  Identities=14%  Similarity=0.042  Sum_probs=82.7

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcC-----CcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPN-----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI  242 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~-----V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrI  242 (554)
                      +..+..++||++.||++++|-+.+.+|+..     +..+++--+.|+.........++.. +.... .++++  .++++|
T Consensus         2 ~~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~-~~~~g-~~~~~--~p~~~l   77 (143)
T cd08900           2 FTLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPE-ITVEA-RYHDI--VPDERI   77 (143)
T ss_pred             EEEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCE-EeeeE-EEEEe--cCCceE
Confidence            345677999999999999999999999964     3444444455665555443333321 22222 22333  478888


Q ss_pred             EEEEEe--cCC--ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          243 SFEQVE--GDF--DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       243 sf~~ve--Gdf--r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      .|+...  ++-  ....-+++|++.+ ++|+|++....-.     .+..-....+..+-..+|..|++.+++
T Consensus        78 ~~t~~~~~~~~~~~~s~v~~~l~~~~-~gT~l~~~~~~~~-----~~~~~~~~~~~~GW~~~l~~L~~~l~~  143 (143)
T cd08900          78 VYTYTMHIGGTLLSASLATVEFAPEG-GGTRLTLTEQGAF-----LDGDDDPAGREQGTAALLDNLAAELER  143 (143)
T ss_pred             EEEEeeccCCccccceEEEEEEEECC-CCEEEEEEEEEec-----ccccchhhhHHHHHHHHHHHHHHHHhC
Confidence            777532  111  1335678899876 5699999876421     111111245567788888888888764

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=97.97  E-value=0.00053  Score=64.71  Aligned_cols=135  Identities=16%  Similarity=0.343  Sum_probs=90.9

Q ss_pred             EEEEEEEEEcCCHHHHHHHHh-CcCcccccCcCC-cEEEEEEecCC---EEEEEEEeccceeEEEEEEEEEEEEeecCCC
Q 008769          166 RCVVASITVKAPVSEVWNVMT-AYETLPEIVPNL-AISKILSRENN---KVRILQEGCKGLLYMVLHARVVMDICEQHEQ  240 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLT-DyE~yPewiP~V-~sSrVL~r~g~---~vrv~q~g~~gil~~~~~~rvvLdv~E~~~r  240 (554)
                      ..+..++.+++|++.+|+++. .-..+|.-+|++ +++++++.+++   .++.+.-+..+-. -.+..+  ++..+...+
T Consensus         4 ~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~-~~~Kek--ve~~D~~~~   80 (151)
T PF00407_consen    4 GKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPF-KYVKEK--VEAIDEENK   80 (151)
T ss_dssp             EEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSE-EEEEEE--EEEEETTTT
T ss_pred             EEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCc-ceeEEE--EEeecCCCc
Confidence            357889999999999999999 556678888886 55688877543   4555544333321 122223  455556679


Q ss_pred             eEEEEEEecCCc----eeEEEEEEEEcCCCeEEEEEEEEEEeccCcc-chHHHHHHHHHhhHHHHHHHHHHHH
Q 008769          241 EISFEQVEGDFD----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSL-LSEAIMEEVIYEDLPSNLCAIRDYV  308 (554)
Q Consensus       241 rIsf~~veGdfr----~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~-LP~~Lver~vre~l~~~L~ALR~rA  308 (554)
                      .+.|++++|++-    .|...-.+.|.++|+|.+++++++++.++.. .|.-.++.     +..+++++.+++
T Consensus        81 ~~~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~~~~-----~~~~~K~ieayL  148 (151)
T PF00407_consen   81 TITYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKYLDF-----AVGMFKAIEAYL  148 (151)
T ss_dssp             EEEEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred             EEEEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHHHHH-----HHHHHHHHHHHH
Confidence            999999999853    6666666668788889999999999875432 33333322     556666666554

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins

Probab=97.93  E-value=0.00036  Score=64.22  Aligned_cols=134  Identities=19%  Similarity=0.132  Sum_probs=82.4

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCC--------cEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCC
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNL--------AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHE  239 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V--------~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~  239 (554)
                      |+.+++|+||++.||++++|  .+.+|++.-        ..+.+-.+.|+....  ...++-. . ... .++++  .++
T Consensus         2 ~~~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~GG~~~~--~~~~g~~-~-~~g-~v~~v--~p~   72 (149)
T cd08891           2 VRKSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAGGRWYE--IGEDGTE-C-EWG-TVLAW--EPP   72 (149)
T ss_pred             eEEEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCCcEEEE--ecCCCcE-e-ceE-EEEEE--cCC
Confidence            67899999999999999999  588887632        334444455554432  2223321 1 122 22333  478


Q ss_pred             CeEEEEEEe-cCCc-----eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          240 QEISFEQVE-GDFD-----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       240 rrIsf~~ve-Gdfr-----~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      ++|.|+-.- ..+.     ...-+|+|++.++++|+|++....-...+.-.........+..+-..+|..|++.+|+
T Consensus        73 ~~l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~  149 (149)
T cd08891          73 SRLVFTWQINADWRPDPDKASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAEK  149 (149)
T ss_pred             CEEEEEeccCCCcCcCCCCceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhcC
Confidence            899887652 1111     3467899999873579998877643210000012334445677888999999998874

This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci

>PRK10724 hypothetical protein; Provisional

Probab=97.91  E-value=2e-05  Score=74.78  Aligned_cols=66  Identities=20%  Similarity=0.392  Sum_probs=52.8

Q ss_pred             CCCCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHH-HHHHHHHHhccc
Q 008769            1 MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQ-ALACRAERSFGW   68 (554)
Q Consensus         1 mv~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~-Ai~~~ae~~~~~   68 (554)
                      |++|+|+.|+|.|+++|.+++ +|.++|+++++.+-.++..++ +++.+++..+|. |.++||+++++.
T Consensus        91 ~~~GpF~~l~g~W~f~p~~~~-~t~V~~~l~fef~s~l~~~~~-~~~~~~~~~~mv~AF~~Ra~~~yg~  157 (158)
T PRK10724         91 LVDGPFKKLIGGWKFTPLSQE-ACRIEFHLDFEFTNKLIELAF-GRVFKELASNMVQAFTVRAKEVYSA  157 (158)
T ss_pred             ecCCChhhccceEEEEECCCC-CEEEEEEEEEEEchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            579999999999999998743 589999999995555554333 666677777777 999999998764

>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.89  E-value=0.0011  Score=60.87  Aligned_cols=134  Identities=13%  Similarity=0.102  Sum_probs=85.0

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCC----cEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS  243 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V----~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIs  243 (554)
                      ++.+..++|||+.||+.++|-+.+.+|+..-    ..+++--+.|+...+...+.++-. ...... ++++  .++++|.
T Consensus         2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~-~~~~g~-~~ei--~p~~~l~   77 (142)
T cd07826           2 IVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEE-MGFHGV-YHEV--TPPERIV   77 (142)
T ss_pred             EEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCE-ecceEE-EEEE--cCCCEEE
Confidence            4667889999999999999999999999753    234444456666555433222211 122222 2232  4778888


Q ss_pred             EEEEecC--CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769          244 FEQVEGD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       244 f~~veGd--fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE  309 (554)
                      |...-..  -....-+|+|++.+ ++|+|+.+..+..   .-.-...+...+..+-..+|..|.+.++
T Consensus        78 ~t~~~~~~~~~~s~v~~~l~~~~-~gT~l~l~~~~~~---~~~~~~~~~~~~~~Gw~~~l~~L~~~l~  141 (142)
T cd07826          78 QTEEFEGLPDGVALETVTFTELG-GRTRLTATSRYPS---KEARDGVLASGMEEGMEESYDRLDELLA  141 (142)
T ss_pred             EEeEecCCCCCceEEEEEEEECC-CCEEEEEEEEeCC---HHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            8754321  22456788999976 5799998755421   0011123555677888889988887764

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG3832 Uncharacterized conserved protein [Function unknown]

Probab=97.51  E-value=0.0029  Score=59.20  Aligned_cols=138  Identities=14%  Similarity=0.104  Sum_probs=82.9

Q ss_pred             CCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769          162 GGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  241 (554)
Q Consensus       162 ~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr  241 (554)
                      ...+..+..+.+|+|||+.||+.+||-+.+++|+. -.-.+.--+.++..++...+..+-. +.+...+ +++  .++++
T Consensus         4 ~~~~~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~gg~~~~~~~~~~g~~-~~~~~~~-~~v--~p~~r   78 (149)
T COG3832           4 SVEDRTLEIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTGGGERVRFRGPDGPV-HSFEGEY-LEV--VPPER   78 (149)
T ss_pred             CCCCceEEEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecCCceEEeeecCCCCe-eecceEE-EEE--cCCcE
Confidence            45567789999999999999999999999999998 2212222233333333333333311 2333332 344  47888


Q ss_pred             EEEEEEecC----CceeEEEEEEEEcCCC-eEEEEEEEEEEeccCccchHHHH--HHHHHhhHHHHHHHHHHHHH
Q 008769          242 ISFEQVEGD----FDSFQGKWLFEQLGSH-HTLLKYSVESKMQKNSLLSEAIM--EEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       242 Isf~~veGd----fr~f~G~W~LeplgdG-~TrVtY~v~~eP~~gg~LP~~Lv--er~vre~l~~~L~ALR~rAE  309 (554)
                      |.|+-....    +..-..+|+|.+..+| +|++......     ..+++.-.  ...+.++-..++..|++.++
T Consensus        79 Iv~tw~~~~~~~~~~~~~v~~~l~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~  148 (149)
T COG3832          79 IVFTWDFDEDGEPFLKSLVTITLTPEDDGGTTTLVRTSGG-----GFLEDEDQKLGMGMEEGWGQLLDNLKALLE  148 (149)
T ss_pred             EEEEeccCCCCCcccCceEEEEEEEecCCCcEEEEEEeec-----cccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence            887754422    1244788888886655 3443333322     12444332  23347888888888888765

>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=97.43  E-value=0.0044  Score=61.62  Aligned_cols=164  Identities=16%  Similarity=0.135  Sum_probs=104.6

Q ss_pred             CcccCCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHH-HHHHHHhCcCcccccCcCCcEEEE
Q 008769          125 SSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVS-EVWNVMTAYETLPEIVPNLAISKI  203 (554)
Q Consensus       125 ~~~~~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe-~VWaVLTDyE~yPewiP~V~sSrV  203 (554)
                      +.+...+|....+.+++       +|+.++..    .+...+..++++.|+++|. .++++|.|   -..|=+++.++++
T Consensus        22 ~~ek~kgW~~~~~~~~v-------ev~~kk~~----d~~~l~lwk~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~~   87 (205)
T cd08907          22 ASERFKGWHSAPGPDNT-------ELACKKVG----DGHPLRLWKVSTEVEAPPSVVLQRVLRE---RHLWDEDLLHSQV   87 (205)
T ss_pred             hhhccCCceeecCCCCc-------EEEEEeCC----CCCceEEEEEEEEecCCCHHHHHHHhhc---hhhhhHHHHhhhh
Confidence            34667799999999999       99999532    2344788999999986655 55788888   5569999999988


Q ss_pred             EEec--CCEEEEEEEeccceeEEEEEEEEEEEEe--ecC-CCe-EEEEEEe-------cCCc--eeEEEEEEEEcCCCeE
Q 008769          204 LSRE--NNKVRILQEGCKGLLYMVLHARVVMDIC--EQH-EQE-ISFEQVE-------GDFD--SFQGKWLFEQLGSHHT  268 (554)
Q Consensus       204 L~r~--g~~vrv~q~g~~gil~~~~~~rvvLdv~--E~~-~rr-Isf~~ve-------Gdfr--~f~G~W~LeplgdG~T  268 (554)
                      +++=  ++.+-.|...  ++.++.-..-++++--  ..+ +.- |.=..++       |.++  .+.-.+-++|.+.|+|
T Consensus        88 Ie~Ld~n~dI~yY~~~--~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~g~s  165 (205)
T cd08907          88 IEALENNTEVYHYVTD--SMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGMGRS  165 (205)
T ss_pred             heeecCCCEEEEEEec--CCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCCCCe
Confidence            8772  3344333321  1111111111111110  000 011 1111111       1122  3334456899988999


Q ss_pred             EEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 008769          269 LLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY  307 (554)
Q Consensus       269 rVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~r  307 (554)
                      +|+|-..++|+  |.+|.|. ++.+..-+...|..||+-
T Consensus       166 ~ltyi~rvD~r--G~~P~Wy-nk~~g~~~a~~l~~ir~s  201 (205)
T cd08907         166 RLTHICRADLR--GRSPDWY-NKVFGHLCAMEVARIRDS  201 (205)
T ss_pred             EEEEEEEeCCC--CCCcHHH-HHhHHHHHHHHHHHHHhh
Confidence            99999999995  6799998 999999999999888863

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=97.42  E-value=0.00032  Score=62.22  Aligned_cols=58  Identities=17%  Similarity=0.328  Sum_probs=52.7

Q ss_pred             CCC-CcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHH
Q 008769            3 DGD-FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRA   62 (554)
Q Consensus         3 ~GD-F~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~a   62 (554)
                      +|. |..++|.|++++.++  +|.++|++++.|...+|..++...++..+...+.++++.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~--~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  140 (140)
T cd07819          82 EGEGNRSQEGSYTLTPKGD--GTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKRV  140 (140)
T ss_pred             cccceeEEEEEEEEEECCC--CEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhhC
Confidence            455 888999999999865  7999999999999999999999999999999999999875

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=97.32  E-value=0.00058  Score=65.40  Aligned_cols=57  Identities=18%  Similarity=0.319  Sum_probs=53.1

Q ss_pred             CcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHH
Q 008769            6 FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE   63 (554)
Q Consensus         6 F~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae   63 (554)
                      |+.+.|.|.+++.+ ..+|.++|.+.+.|+.++|..+|....++.++..|.|++++|.
T Consensus       139 ~~~~~~~~~i~~~~-~~~t~vt~~~~~dp~g~iP~~lv~~~~~~~~~~~l~~l~~~~~  195 (195)
T cd08876         139 IKTVEGQWTFTPLG-NGKTRVTYQAYADPGGSIPGWLANAFAKDAPYNTLENLRKQLK  195 (195)
T ss_pred             ceeceeeEEEEECC-CCeEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            78899999999987 4569999999999999999999999999999999999999983

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins

Probab=97.18  E-value=0.0075  Score=54.31  Aligned_cols=120  Identities=15%  Similarity=0.129  Sum_probs=74.5

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV  247 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~v  247 (554)
                      +..++.|+||++.||+.++|-+.+..|+....  .+-.+.|+...+.    .+.    +.. .++++  .++++|.|+-.
T Consensus         2 i~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~--~~d~~~GG~~~~~----~g~----~~g-~~~~i--~p~~~l~~~w~   68 (126)
T cd08892           2 ISLTETFQVPAEELYEALTDEERVQAFTRSPA--KVDAKVGGKFSLF----GGN----ITG-EFVEL--VPGKKIVQKWR   68 (126)
T ss_pred             eEEEEEECCCHHHHHHHHCCHHHHHhhcCCCc--eecCCCCCEEEEe----CCc----eEE-EEEEE--cCCCEEEEEEE
Confidence            56778999999999999999999999986433  2323445543332    121    111 22233  47788877654


Q ss_pred             ec--C-CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHH-HHHHHHHHHH
Q 008769          248 EG--D-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDYVE  309 (554)
Q Consensus       248 eG--d-fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~-~L~ALR~rAE  309 (554)
                      -.  + -....-+|+|++.+ ++|+|++....-+.      . - ...+..+-.. .+..|++.++
T Consensus        69 ~~~~~~~~~s~v~~~l~~~~-~gT~ltl~~~g~~~------~-~-~~~~~~GW~~~~~~~l~~~~~  125 (126)
T cd08892          69 FKSWPEGHYSTVTLTFTEKD-DETELKLTQTGVPA------G-E-EERTREGWERYYFESIKQTFG  125 (126)
T ss_pred             cCCCCCCCcEEEEEEEEECC-CCEEEEEEEECCCC------c-h-HHHHHhhHHHHHHHHHHHHhC
Confidence            21  1 12456789999975 57999988764331      1 1 1335566554 7777777653

This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m

>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=97.02  E-value=0.0019  Score=57.30  Aligned_cols=60  Identities=15%  Similarity=0.119  Sum_probs=52.3

Q ss_pred             CCCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCH----HHHHHHHhcchhHHHHHHHHHHH
Q 008769            2 VDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPA----IFLERIIRSDLPVNLQALACRAE   63 (554)
Q Consensus         2 v~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~----~lve~~~~~dlp~nL~Ai~~~ae   63 (554)
                      ..|.| .++|.|++++.++ .+|+++|++...|+..++.    .+++...++.+...|..+++.||
T Consensus        75 ~~~~~-~~~~~~~f~~~~~-~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE  138 (139)
T cd07817          75 VEGAD-PNAGSVRFRPAPG-RGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE  138 (139)
T ss_pred             CCCCC-CcceEEEEEECCC-CCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence            35777 8999999999764 4799999999999988875    67899999999999999999987

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PTZ00220 Activator of HSP-90 ATPase; Provisional

Probab=96.91  E-value=0.006  Score=55.86  Aligned_cols=122  Identities=12%  Similarity=0.111  Sum_probs=70.9

Q ss_pred             EcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEEecCC--
Q 008769          174 VKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDF--  251 (554)
Q Consensus       174 I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~veGdf--  251 (554)
                      ++|||++||+++||-+.+.+|.-. ..+++-.+.|+..++..    +    .+.. .++++  .++++|.|+..-.+.  
T Consensus         1 f~ap~e~Vw~A~Tdp~~l~~w~~~-~~~~~d~~~GG~f~~~~----~----~~~G-~~~ev--~pp~rlv~tw~~~~~~~   68 (132)
T PTZ00220          1 FYVPPEVLYNAFLDAYTLTRLSLG-SPAEMDAKVGGKFSLFN----G----SVEG-EFTEL--EKPKKIVQKWRFRDWEE   68 (132)
T ss_pred             CCCCHHHHHHHHcCHHHHHHHhcC-CCccccCCcCCEEEEec----C----ceEE-EEEEE--cCCCEEEEEEecCCCCC
Confidence            479999999999999999999421 12333334555443321    1    1122 22233  478888877543221  


Q ss_pred             -ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHH-HHHHHHHHH
Q 008769          252 -DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDYV  308 (554)
Q Consensus       252 -r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~-~L~ALR~rA  308 (554)
                       ....-+|+|++.++++|+|+....--|.... .-.......+..+... .|+.|++.+
T Consensus        69 ~~~s~vt~~~~~~~~g~T~lt~~~~g~~~~~~-~~~~~~~~~~~~GW~~~~ld~L~~~l  126 (132)
T PTZ00220         69 DVYSKVTIEFRAVEEDHTELKLTQTGIPSLDK-FGNGGCLERCRNGWTQNFLDRFEKIL  126 (132)
T ss_pred             CCceEEEEEEEeCCCCcEEEEEEEecCccccc-cCCCchhhHHHhChHHHHHHHHHHHh
Confidence             1346789999976668999998773221100 0000223455667776 477777654

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=96.84  E-value=0.0044  Score=57.91  Aligned_cols=60  Identities=8%  Similarity=0.176  Sum_probs=52.7

Q ss_pred             CCCCcceeeeEEeeecCCCCceEEEEEEEeecCC--CCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769            3 DGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRL--NFPAIFLERIIRSDLPVNLQALACRAER   64 (554)
Q Consensus         3 ~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~--~~P~~lve~~~~~dlp~nL~Ai~~~ae~   64 (554)
                      .|.|..-+|.|++++.++  +|+++|.+++..+-  .++..+|.+.+.+.++.+|.+||++||+
T Consensus        83 ~~p~~~m~~~W~f~~~~~--gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~  144 (146)
T cd08860          83 TGPFAYMNIRWEYTEVPE--GTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEA  144 (146)
T ss_pred             CCCcceeeeeEEEEECCC--CEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhh
Confidence            577999999999999865  38999999888654  5667789999999999999999999996

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=96.26  E-value=0.017  Score=50.76  Aligned_cols=58  Identities=12%  Similarity=0.172  Sum_probs=51.9

Q ss_pred             CCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHH
Q 008769            5 DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE   63 (554)
Q Consensus         5 DF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae   63 (554)
                      .|..+.|.|++++.+++ +|.++|+....|...+|..++...+++.+...|..|++.++
T Consensus        83 ~~~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~  140 (140)
T cd07821          83 PVKNYVATIRVTPEGDG-GTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAALE  140 (140)
T ss_pred             CcccceEEEEEEECCCC-ccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence            45788999999997643 69999999999998899999999999999999999999874

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=96.02  E-value=0.018  Score=52.17  Aligned_cols=60  Identities=12%  Similarity=0.196  Sum_probs=50.7

Q ss_pred             CCCCc-ceeeeEEeeecCCCCceEEEEEEEeecCCCCC----HHHHHHHHhcchhHHHHHHHHHHHH
Q 008769            3 DGDFK-KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFP----AIFLERIIRSDLPVNLQALACRAER   64 (554)
Q Consensus         3 ~GDF~-~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P----~~lve~~~~~dlp~nL~Ai~~~ae~   64 (554)
                      .|+|+ .+.+.|++++.+  .+|.|+|.+++.+++..+    -.++...+++++...|.++++.+|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~--~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~  150 (150)
T cd07818          86 IKPFEATNDVEFTLEPVG--GGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK  150 (150)
T ss_pred             cCCccccceEEEEEEEcC--CceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence            36776 889999999984  369999999999887655    3567999999999999999999874

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=95.97  E-value=0.025  Score=49.52  Aligned_cols=58  Identities=17%  Similarity=0.253  Sum_probs=47.8

Q ss_pred             CCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCC--HHHHHHHHhcchhHHHHHHHHHHH
Q 008769            3 DGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFP--AIFLERIIRSDLPVNLQALACRAE   63 (554)
Q Consensus         3 ~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P--~~lve~~~~~dlp~nL~Ai~~~ae   63 (554)
                      .|.| .+.+.|++++.++  +|.|+|+.++++++.++  ..++...+++++...|.++++.||
T Consensus        80 ~~~~-~~~~~~~~~~~~~--~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e  139 (140)
T cd08865          80 SGPF-PYEDTYTFEPVGG--GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLE  139 (140)
T ss_pred             CCCc-ceEEEEEEEEcCC--ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence            3545 4799999998754  69999999999865444  457899999999999999999987

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PLN00188 enhanced disease resistance protein (EDR2); Provisional

Probab=95.96  E-value=0.16  Score=58.60  Aligned_cols=168  Identities=10%  Similarity=0.137  Sum_probs=100.4

Q ss_pred             CCCceeecccccCCCCcccceEEEeeecccccc--CCceEEEEEEEEEcCCHHHHHHHHhCcC-cccccCcCCcEEEEEE
Q 008769          129 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLEN--GGVHRCVVASITVKAPVSEVWNVMTAYE-TLPEIVPNLAISKILS  205 (554)
Q Consensus       129 ~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~--~g~~r~V~asI~I~APpe~VWaVLTDyE-~yPewiP~V~sSrVL~  205 (554)
                      .+.|++++-.+|+       .+.-+..|.  +.  .+-.+.+.+.-+|+|++++||++|.+.. .-.+|-..+.+.++++
T Consensus       197 ~~~Wr~~~c~NGl-------RiF~e~~~~--~~~~~~~~~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE  267 (719)
T PLN00188        197 RKHWRLLQCQNGL-------RIFEELLEV--DYLPRSCSRAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVE  267 (719)
T ss_pred             cCCeEEEEeeccc-------eeehhhhcc--ccccccCCceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEE
Confidence            3599999999999       444442221  11  1124789999999999999999999887 7778999999999998


Q ss_pred             ecC-CEEEEEEEeccceeE-------EEEEEEEEEEEeecCCC--eEEEEEEe--------cCCc--eeEEEEEEEEcC-
Q 008769          206 REN-NKVRILQEGCKGLLY-------MVLHARVVMDICEQHEQ--EISFEQVE--------GDFD--SFQGKWLFEQLG-  264 (554)
Q Consensus       206 r~g-~~vrv~q~g~~gil~-------~~~~~rvvLdv~E~~~r--rIsf~~ve--------Gdfr--~f~G~W~Leplg-  264 (554)
                      +-+ +.-.+|.+...+.+.       |++...+    ....+.  .|.+..+.        |.++  .--|-|.+.|+. 
T Consensus       268 ~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Ryw----rr~eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~  343 (719)
T PLN00188        268 EVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYW----RRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKP  343 (719)
T ss_pred             EecCCeEEEEEEeccccccCccCcceeEEEEEE----EEcCCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCC
Confidence            844 443444432211110       1111111    111222  23333333        2233  224889999952 


Q ss_pred             ---CCeEEEEEEEEEEeccCccchHHH--HHHHHHhhHHHHHHHHHHHHHhh
Q 008769          265 ---SHHTLLKYSVESKMQKNSLLSEAI--MEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       265 ---dG~TrVtY~v~~eP~~gg~LP~~L--ver~vre~l~~~L~ALR~rAEr~  311 (554)
                         ..+|.|++-++++++  ||.|...  ..+-+.=.+...+.+||+...+.
T Consensus       344 ~~g~~r~lv~~~lqtDlk--GW~~~y~~s~~~~~~l~mL~~VAgLrE~~~~~  393 (719)
T PLN00188        344 RNGRPRTQVQHLMQIDLK--GWGVGYIPSFQQHCLLQMLNSVAGLREWFSQT  393 (719)
T ss_pred             CCCCCceEEEEEEEEccC--ccccccCccccccchHHHHHHHHHHHHHHhcC
Confidence               247999999999985  6777543  11222223334556666664443

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=95.92  E-value=0.028  Score=49.94  Aligned_cols=57  Identities=14%  Similarity=0.198  Sum_probs=48.8

Q ss_pred             CCCcceeeeEEeeecCCCCceEEEEEEEeecCCC---CCHHHHHHHHhcchhHHHHHHHHHH
Q 008769            4 GDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN---FPAIFLERIIRSDLPVNLQALACRA   62 (554)
Q Consensus         4 GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~---~P~~lve~~~~~dlp~nL~Ai~~~a   62 (554)
                      +.|..++|.|.+++.  +.+|.|+|++++.|.-.   ||..++....++.+..-+.+||+++
T Consensus        84 ~~~~~~~~~~~l~~~--~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~  143 (144)
T cd05018          84 AGFVKGTARVTLEPD--GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI  143 (144)
T ss_pred             CceEEEEEEEEEEec--CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            348899999999997  35699999999996544   4899999999999999999999876

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]

Probab=95.60  E-value=0.64  Score=46.91  Aligned_cols=169  Identities=10%  Similarity=0.058  Sum_probs=108.4

Q ss_pred             ccCCCceeecccccCCCCcccceEEE-eeeccccccCCceEEEEEEEEE-cCCHHHHHHHHhCcCcccccCcCCcEEEEE
Q 008769          127 DLNSKWGVFGQVCRLDRPCFVDEVHL-RRFDGLLENGGVHRCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKIL  204 (554)
Q Consensus       127 ~~~~~W~~~~~~~gi~~~~~~deV~l-rr~d~~~e~~g~~r~V~asI~I-~APpe~VWaVLTDyE~yPewiP~V~sSrVL  204 (554)
                      ++...|+..-+..++       .+.- |+     +.+| ++.++...+. +++|+.|++++.|.+-=+.|=..+...+.+
T Consensus        26 ~~~~~We~~~~k~~~-------~i~~q~~-----~~~g-~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~i   92 (219)
T KOG2761|consen   26 DAGQGWELVMDKSTP-------SIWRQRR-----PKTG-LYEYKSRTVFEDVTPEIVRDVQWDDEYRKKWDDMVIELETI   92 (219)
T ss_pred             CcccchhhhcccCCc-------eEEEEcc-----cCCC-CEEEEEEEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhheee
Confidence            445699999999888       7666 42     3334 6665555555 699999999999999999999999999999


Q ss_pred             Eec---CCEEEEEEEeccceeE-EEEE-EEEEEEEeecCCCeEEEEEEe--------cCCc--eeEEEEEEE----EcCC
Q 008769          205 SRE---NNKVRILQEGCKGLLY-MVLH-ARVVMDICEQHEQEISFEQVE--------GDFD--SFQGKWLFE----QLGS  265 (554)
Q Consensus       205 ~r~---g~~vrv~q~g~~gil~-~~~~-~rvvLdv~E~~~rrIsf~~ve--------Gdfr--~f~G~W~Le----plgd  265 (554)
                      +..   |+.+..|...+-.++. .-+. .+..++..+ ....|.-..+.        +..+  .+.-.|.+.    ..++
T Consensus        93 e~d~~tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~~~-k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~  171 (219)
T KOG2761|consen   93 EEDPVTGTEVVYWVKKFPFPMSNRDYVYVRRWWESDE-KDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDE  171 (219)
T ss_pred             eecCCCCceEEEEEEeCCcccCCccEEEEEEEEecCC-ceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCC
Confidence            876   4455445443321110 0011 111111100 01111111111        1122  567778777    3345


Q ss_pred             CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          266 HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       266 G~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      ++|.+.|.....|  ++.+|.++++..++.+++..++-+-..+.++
T Consensus       172 ~~~~~~~~~~~~p--~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~Y  215 (219)
T KOG2761|consen  172 QGCACEYLYFHNP--GGGIPKWVVKLAVRKGMPGAVKKMEKALLAY  215 (219)
T ss_pred             CccEEEEEEEECC--CCCCcHHHHHHHHHhcChHHHHHHHHHHHhh
Confidence            5799999888888  4679999999999999999998886655544

>COG4276 Uncharacterized conserved protein [Function unknown]

Probab=95.56  E-value=0.42  Score=44.99  Aligned_cols=128  Identities=19%  Similarity=0.168  Sum_probs=77.3

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEE----EEEE-Eeccce-eEEEEEEEEEEEEeecCCCe
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV----RILQ-EGCKGL-LYMVLHARVVMDICEQHEQE  241 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~v----rv~q-~g~~gi-l~~~~~~rvvLdv~E~~~rr  241 (554)
                      +.-..+|.||+|.||+.-+-.+++-.--|.-+   |+-+.+..+    ++.. ...-++ ..+.|.++.+..- +++..+
T Consensus         4 F~~~~~i~aP~E~VWafhsrpd~lq~LTppw~---VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~-~d~~~~   79 (153)
T COG4276           4 FVYRTTITAPHEMVWAFHSRPDALQRLTPPWI---VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESG-FDNGSR   79 (153)
T ss_pred             eEEeeEecCCHHHHhhhhcCccHHHhcCCCcE---EeccCCCcccceeeeeecceeecCCCCceEEEEeeecc-cCCcce
Confidence            44567899999999999999998876666555   333333222    1110 011111 1247888765432 455667


Q ss_pred             EEEEEEecCCcee--EEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHH
Q 008769          242 ISFEQVEGDFDSF--QGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNL  301 (554)
Q Consensus       242 Isf~~veGdfr~f--~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L  301 (554)
                      +.=.++.|+|..+  .-...|.+.+ |+|.+.=++.++++. +-+-..+..+...-.+..|+
T Consensus        80 FtDv~i~gPfp~~~WrHtH~F~~eg-g~TvliD~Vsye~p~-g~~~~~~g~~l~q~~l~~mF  139 (153)
T COG4276          80 FTDVCITGPFPALNWRHTHNFVDEG-GGTVLIDSVSYELPA-GTLTGMFGYRLTQLILDLMF  139 (153)
T ss_pred             eeeeeecCCccceeeEEEeeeecCC-CcEEEEeeEEeeccC-cceechhhhhhHHHHHHHHH
Confidence            7667899999974  3444687765 579988888888753 32334444444444444444

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=94.99  E-value=0.1  Score=45.77  Aligned_cols=57  Identities=19%  Similarity=0.304  Sum_probs=47.3

Q ss_pred             CCcceeeeEEeeecCCCCceEEEEEEEeecC--CCCCHHHHHHHHhcchhHHHHHHHHHHH
Q 008769            5 DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPR--LNFPAIFLERIIRSDLPVNLQALACRAE   63 (554)
Q Consensus         5 DF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~--~~~P~~lve~~~~~dlp~nL~Ai~~~ae   63 (554)
                      -+..+.|.|+++|.+++  |+++|+.++.|.  -+++..++...++.++...|..+++.||
T Consensus        81 ~~~~~~~~~~~~~~~~g--t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E  139 (139)
T PF10604_consen   81 GFTNGTGRWRFEPVGDG--TRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE  139 (139)
T ss_dssp             SSCEEEEEEEEEEETTT--EEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEEEEEEEEEEcCCC--EEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence            35567999999997644  899999999973  3445677899999999999999999987

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=94.98  E-value=0.78  Score=43.40  Aligned_cols=138  Identities=20%  Similarity=0.203  Sum_probs=76.9

Q ss_pred             EEEEEEcCCHHHHHHHHhCcCcccccCcCC----cEEEEEEecCCEEEE--EEE-eccc-------eeEEEEEEEEEEEE
Q 008769          169 VASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRI--LQE-GCKG-------LLYMVLHARVVMDI  234 (554)
Q Consensus       169 ~asI~I~APpe~VWaVLTDyE~yPewiP~V----~sSrVL~r~g~~vrv--~q~-g~~g-------il~~~~~~rvvLdv  234 (554)
                      +.++.+++|+++||++++|-+-|..=+..+    ..+..+..+++++.+  .+. ....       ++.-.+....+-..
T Consensus         2 ~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e~w   81 (159)
T PF10698_consen    2 EHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDGVRVTVRQTVPADKLPSAARKFVGGDLRVTRTETW   81 (159)
T ss_pred             eEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCeEEEEEEEecChhhCCHHHHHhcCCCeEEEEEEEE
Confidence            567889999999999999976554443333    334444445555433  221 1111       11100111111001


Q ss_pred             eecCCCe--EEEEE-EecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769          235 CEQHEQE--ISFEQ-VEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       235 ~E~~~rr--Isf~~-veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE  309 (554)
                      .-..+..  ..+.. +.|.--.+.|+-+|++.+ ++|++++..+++.+  .++-...+++.+...+...+..-.+.+.
T Consensus        82 ~~~~~g~~~g~~~~~~~G~P~~~~G~~~L~~~~-~gt~~~~~g~v~v~--VPlvGgkiE~~v~~~~~~~~~~e~~~~~  156 (159)
T PF10698_consen   82 TPLDDGRRTGTFTVSIPGAPVSISGTMRLRPDG-GGTRLTVEGEVKVK--VPLVGGKIEKAVAENLRKLLEAEQEFTA  156 (159)
T ss_pred             ecCCCCeEEEEEEEEecCceEEEEEEEEEecCC-CCEEEEEEEEEEEE--EccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0001222  22221 225445889999999955 57999999998864  3444556777777777777776655544

The function is not known.

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=94.87  E-value=0.085  Score=46.60  Aligned_cols=59  Identities=15%  Similarity=0.152  Sum_probs=47.5

Q ss_pred             CCCcceeeeEEeeecCCCCceEEEEEEEeecCC-CCCHHHHHHHHhcchhHHHHHHHHHHH
Q 008769            4 GDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRL-NFPAIFLERIIRSDLPVNLQALACRAE   63 (554)
Q Consensus         4 GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~-~~P~~lve~~~~~dlp~nL~Ai~~~ae   63 (554)
                      +++..+.+.|++++.+ +.+|.|+|+.++.+.+ .+.-.++...++++++.+|.++++.+|
T Consensus        78 ~~~~~~~~~~~~~~~~-~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E  137 (138)
T cd08862          78 APGISAVHRHEFEAKP-DGGVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAAE  137 (138)
T ss_pred             CCCEEEEEEEEEEEcC-CCcEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence            3445667899999865 3588999999988754 234578999999999999999999987

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=93.61  E-value=0.26  Score=48.52  Aligned_cols=58  Identities=12%  Similarity=0.168  Sum_probs=51.8

Q ss_pred             cceeeeEEeeecC-CCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769            7 KKFEGKWSIKSGT-RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER   64 (554)
Q Consensus         7 ~~f~G~W~l~~~~-~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~   64 (554)
                      +.|.|.|.|+|.+ +..+|..+|....-|.-++|..||.....+-+|.-|..|++.+.+
T Consensus       150 ~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~IP~wlvN~~~~~~~~~~l~~l~~a~~~  208 (209)
T cd08870         150 DDYESSLVIRAVKGDGQGSACEVTYFHNPDGGIPRELAKLAVKRGMPGFLKKLENALRK  208 (209)
T ss_pred             EEEEeEEEEEEecCCCCceEEEEEEEECCCCCCCHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence            4589999999985 456788899999999999999999999999999999999998854

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=93.60  E-value=0.2  Score=49.30  Aligned_cols=57  Identities=16%  Similarity=0.153  Sum_probs=51.4

Q ss_pred             cceeeeEEeeecCCCCceEEEEEEEeecCCC-CCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769            7 KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN-FPAIFLERIIRSDLPVNLQALACRAER   64 (554)
Q Consensus         7 ~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~-~P~~lve~~~~~dlp~nL~Ai~~~ae~   64 (554)
                      ..+.|.|.|+|.+. ..|.++|.+.+-|+.. +|..||.+..++-.+.-|.+|++.|+.
T Consensus       157 ~~~~~~~~i~p~~~-~~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~~l~k~~~~  214 (215)
T cd08877         157 IIKYYGFVITPISP-TKCYLRFVANVDPKMSLVPKSLLNFVARKFAGLLFEKIQKAAKN  214 (215)
T ss_pred             EEecceEEEEEcCC-CCeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35789999999864 4589999999999998 999999999999999999999999974

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=93.46  E-value=0.13  Score=50.46  Aligned_cols=58  Identities=14%  Similarity=0.188  Sum_probs=52.4

Q ss_pred             ceeeeEEeeecCC-CCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769            8 KFEGKWSIKSGTR-SSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS   65 (554)
Q Consensus         8 ~f~G~W~l~~~~~-~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~   65 (554)
                      .+.|.|.|+|.+. ...|.++|.+.+-|+-++|..||...+.+-++.-|.++|+.++.+
T Consensus       150 ~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~~lvN~~~~~~~~~~~~~Lr~~~~~~  208 (208)
T cd08868         150 NGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQYLVDQALASVLLDFMKHLRKRIATL  208 (208)
T ss_pred             ccccEEEEEECCCCCCceEEEEEEEECCCCCCcceeeehhhHHHHHHHHHHHHHHHhhC
Confidence            3679999999874 367899999999999999999999999999999999999998753

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=93.41  E-value=0.15  Score=46.68  Aligned_cols=56  Identities=21%  Similarity=0.345  Sum_probs=45.1

Q ss_pred             CCCCcceeeeEEeeecCCCCceEEEEEEEeecCC-------CCCHHHHHHHHhcchhHHHHHHHHH
Q 008769            3 DGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRL-------NFPAIFLERIIRSDLPVNLQALACR   61 (554)
Q Consensus         3 ~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~-------~~P~~lve~~~~~dlp~nL~Ai~~~   61 (554)
                      +|+|+. +|.|++++.+  .+|.|+|+.++.++-       .|+-.|+....++-++..+.+++++
T Consensus        83 ~g~~~~-~~~~~~~~~~--~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~  145 (146)
T cd07824          83 SGDLEG-VGRWTLAPDG--SGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR  145 (146)
T ss_pred             EEeeeE-EEEEEEEEcC--CCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence            577774 8999999954  368999999999853       5666788888888899988888875

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins

Probab=93.15  E-value=0.32  Score=48.00  Aligned_cols=57  Identities=16%  Similarity=0.157  Sum_probs=51.3

Q ss_pred             ceeeeEEeeecC--CCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769            8 KFEGKWSIKSGT--RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER   64 (554)
Q Consensus         8 ~f~G~W~l~~~~--~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~   64 (554)
                      .|.|.|.|+|..  +..+|.++|....-|.-++|..||.....+-+|.-|..+++.|.+
T Consensus       148 ~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG~IP~~lvN~~~~~~~~~~l~~l~~a~~~  206 (207)
T cd08911         148 DYWSYMVIRPHKSFDEPGFEFVLTYFDNPGVNIPSYITSWVAMSGMPDFLERLRNAALK  206 (207)
T ss_pred             EeEEEEEEEeCCCCCCCCeEEEEEEEeCCCCccCHHHHHHHHHhhccHHHHHHHHHHhc
Confidence            489999999975  345788899999999999999999999999999999999999865

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=92.59  E-value=0.39  Score=47.48  Aligned_cols=61  Identities=16%  Similarity=0.235  Sum_probs=53.8

Q ss_pred             ceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHhcccc
Q 008769            8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWN   69 (554)
Q Consensus         8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~~~~~   69 (554)
                      .+.|.|.|++.+ ..+|.++|.+.+-|+-++|..||-..+.+..|.-|..|++.|++..+..
T Consensus       147 ~~~~g~~i~p~~-~~~t~vt~~~~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~~~~  207 (222)
T cd08871         147 SLLTGYLIRPTG-PKGCTLTYVTQNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALKYPEWK  207 (222)
T ss_pred             EEccEEEEEECC-CCCEEEEEEEecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            357889999986 4568999999999999999999999999999999999999998764443

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins

Probab=92.57  E-value=0.41  Score=47.30  Aligned_cols=56  Identities=11%  Similarity=0.155  Sum_probs=51.1

Q ss_pred             ceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769            8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER   64 (554)
Q Consensus         8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~   64 (554)
                      .|.|.|.|++.. ..+|.++|...+-|.-++|..||.....+-+|.-|..|++.|.+
T Consensus       151 ~~~~~~~i~p~~-~~~t~i~~~~~~DPgG~IP~wlvN~~~~~~~~~~l~~l~ka~~~  206 (207)
T cd08910         151 QYKQSLAIESDG-KKGSKVFMYYFDNPGGMIPSWLINWAAKNGVPNFLKDMQKACQN  206 (207)
T ss_pred             EEEEEEEEEeCC-CCceEEEEEEEeCCCCcchHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence            589999999864 35689999999999999999999999999999999999999864

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.

>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []

Probab=91.74  E-value=0.53  Score=45.11  Aligned_cols=57  Identities=19%  Similarity=0.325  Sum_probs=52.1

Q ss_pred             ceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769            8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS   65 (554)
Q Consensus         8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~   65 (554)
                      .|-+.|.|+|.+++. |.++|...+-|+-++|..++...+.+-+|.-+..+++.+++.
T Consensus       147 ~~~s~~~i~~~~~~~-~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~  203 (206)
T PF01852_consen  147 ILISGWVIRPLGDGR-TRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQ  203 (206)
T ss_dssp             EESEEEEEEEETTCE-EEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             eeeEeEEEEEccCCC-ceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            477999999987655 899999999999999999999999999999999999998764

StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....

>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

Probab=91.60  E-value=0.82  Score=38.43  Aligned_cols=53  Identities=25%  Similarity=0.418  Sum_probs=42.8

Q ss_pred             ceeeeEEeeecCCCCceEEEEEEEeecCCCC---CHHHHHHHHhcchhHHHHHHHHH
Q 008769            8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF---PAIFLERIIRSDLPVNLQALACR   61 (554)
Q Consensus         8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~---P~~lve~~~~~dlp~nL~Ai~~~   61 (554)
                      .+.|.|++++..+ .+|+|+|++++.++.++   +..+++..+++.++.-+.+++++
T Consensus        85 ~~~~~~~~~~~~~-~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T cd07812          85 DGTGEWRLEPEGD-GGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKAR  140 (141)
T ss_pred             ceeEEEEEEECCC-CcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHhh
Confidence            7899999999754 47899999999998886   67778888887777777766653

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=91.12  E-value=0.66  Score=46.01  Aligned_cols=57  Identities=16%  Similarity=0.134  Sum_probs=49.6

Q ss_pred             ceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769            8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER   64 (554)
Q Consensus         8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~   64 (554)
                      .+.|.|.+.+..+...|.++|.+.+-|+-++|..||...+.+-.-.-|.++|++++.
T Consensus       152 ~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~lP~~lvN~~~~~~~~~~~~~LR~~~~~  208 (209)
T cd08906         152 GPGGFVVLKSASNPSVCTFIWILNTDLKGRLPRYLIHQSLAATMFEFASHLRQRIRD  208 (209)
T ss_pred             eccEEEEEECCCCCCceEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            467888887645566789999999999999999999999998888999999998864

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily

Probab=90.56  E-value=1.5  Score=43.66  Aligned_cols=53  Identities=8%  Similarity=0.064  Sum_probs=39.9

Q ss_pred             eeEE-EEEEEEcC-CCeEEEEEEE--EEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 008769          253 SFQG-KWLFEQLG-SHHTLLKYSV--ESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY  307 (554)
Q Consensus       253 ~f~G-~W~Leplg-dG~TrVtY~v--~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~r  307 (554)
                      ...| .|++.|.+ ++.+.|+|..  +.+|  +|.||.|+.+..+-..+......|-+.
T Consensus       149 y~SgE~~~~~p~~~~~~~~vew~maT~sDp--GG~IP~wl~n~~~p~aI~~Dv~~fl~W  205 (208)
T cd08864         149 YASVEKISYLPDADGKSNKVEWIMATRSDA--GGNIPRWLTKLTIPKAIAKDVPLFLDW  205 (208)
T ss_pred             EEEEEEEEEcCccCCCcCCEEEEEEEeeCC--CCcCcHHHHhccCchHHHHhHHHHHHH
Confidence            6678 88988875 5567889988  8887  578999999887777666655555443

Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=90.54  E-value=0.88  Score=45.01  Aligned_cols=56  Identities=11%  Similarity=0.061  Sum_probs=50.1

Q ss_pred             ceeeeEEeeecCC-CCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHH
Q 008769            8 KFEGKWSIKSGTR-SSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE   63 (554)
Q Consensus         8 ~f~G~W~l~~~~~-~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae   63 (554)
                      .+.|.|.++|.+. ...|.++|.+.+-|+-++|..||...+.+-.-.-|.++|++++
T Consensus       151 ~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~iP~~lvN~~~~~~~~~~~~~Lr~~~~  207 (209)
T cd08905         151 NGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRQRMA  207 (209)
T ss_pred             eeccEEEEEECCCCCCceEEEEEEeecCCCCCCHHHHHHHhHHhHHHHHHHHHHHHh
Confidence            3579999999874 4679999999999999999999999999988899999999876

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=89.85  E-value=0.88  Score=41.11  Aligned_cols=41  Identities=15%  Similarity=0.114  Sum_probs=32.6

Q ss_pred             CCCCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHH
Q 008769            1 MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFL   43 (554)
Q Consensus         1 mv~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lv   43 (554)
                      |++|.|+.+++.|++++.++  +|.++|++++.+++++-..++
T Consensus        80 ~~~G~~~~w~h~~~f~~~~~--gT~vt~~v~~~~p~g~lg~~~  120 (137)
T cd07820          80 QVSGPFRSWRHTHRFEAIGG--GTLMTDRVEYRLPLGPLGRLA  120 (137)
T ss_pred             eccCCchhCEEEEEEEECCC--ceEEEEEEEEeCCchhHHHHH
Confidence            46799999999999999764  699999999999654433333

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]

Probab=89.01  E-value=0.9  Score=43.19  Aligned_cols=65  Identities=15%  Similarity=0.357  Sum_probs=44.5

Q ss_pred             CCCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHhcc
Q 008769            2 VDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFG   67 (554)
Q Consensus         2 v~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~~~   67 (554)
                      ++|.|+...|.|+++|. +..+|.+.+.++...+=-+=-.++...-..=-.....|-.+||..++.
T Consensus        80 ~~GPFk~L~~~W~F~pl-~~~~ckV~f~ldfeF~s~ll~~~~g~~f~~~a~~mv~aF~kRA~~~y~  144 (146)
T COG2867          80 IDGPFKYLKGGWQFTPL-SEDACKVEFFLDFEFKSRLLGALIGPVFKRLASKMVEAFEKRAKEVYG  144 (146)
T ss_pred             hcCChhhhcCceEEEEC-CCCceEEEEEEEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            68999999999999998 567789999998876533322222222222223445788888887654

>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function

Probab=88.90  E-value=11  Score=35.91  Aligned_cols=120  Identities=14%  Similarity=0.233  Sum_probs=65.5

Q ss_pred             CHHHHHHHHhC-cCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEEecCCceeE
Q 008769          177 PVSEVWNVMTA-YETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQ  255 (554)
Q Consensus       177 Ppe~VWaVLTD-yE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~veGdfr~f~  255 (554)
                      +.++||+=|.- .++=-.|+|.+.+|+|+++.++.+.-. .-+.+   ..+..++    +..++.++.|....|.    .
T Consensus        19 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~~~R~-v~fg~---~~v~E~v----~~~~~~~V~f~~~~Gs----~   86 (149)
T PF08982_consen   19 TREQLWRGLVLKARNPQLFVPGIDSCEVLSESDTVLTRE-VTFGG---ATVRERV----TLYPPERVDFAQHDGS----S   86 (149)
T ss_dssp             -HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSEEEEE-EEETT---EEEEEEE----EEETTTEEEESSSBEE----E
T ss_pred             CHHHHHHHHHHHHhChhhCccccCeEEEEecCCCeEEEE-EEECC---cEEEEEE----EEeCCcEEEEEcCCCC----E
Confidence            46789986655 444556999999999999987754222 11222   2344443    3457889999433332    2


Q ss_pred             EEEEEEEcCCCeEEEEEEEEEEeccCccc---hH-----HHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          256 GKWLFEQLGSHHTLLKYSVESKMQKNSLL---SE-----AIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       256 G~W~LeplgdG~TrVtY~v~~eP~~gg~L---P~-----~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      -+-.++..++|.=.++|..+....  +.-   ++     -....+.+.....+++.||+.+..
T Consensus        87 lt~~I~e~~~g~L~ltf~ye~~~p--~~~~gs~e~~~~~~~~~~ay~~a~~~Ti~~iRe~~~~  147 (149)
T PF08982_consen   87 LTNIISEPEPGDLFLTFTYEWRLP--GVEPGSPEAKAYQEFYKSAYKEADIDTIRVIRELAKE  147 (149)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEE------S---------BHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             EEEEEecCCCCcEEEEEEEEeccc--ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            222344444555556666655531  111   12     236777788888999999998764

It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.

>smart00234 START in StAR and phosphatidylcholine transfer protein

Probab=87.59  E-value=1.3  Score=42.66  Aligned_cols=57  Identities=9%  Similarity=0.129  Sum_probs=50.9

Q ss_pred             ceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769            8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS   65 (554)
Q Consensus         8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~   65 (554)
                      .+.|.|.|+|.+++. |.++|...+-|.-++|..++.....+-.+.-|..+++.+++.
T Consensus       147 ~~~~~~~i~p~~~~~-t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~  203 (206)
T smart00234      147 NLPSGLLIEPLGNGP-SKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKH  203 (206)
T ss_pred             EeceEEEEEECCCCC-eEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence            478999999987654 899999999999999999999999999999999998877654

putative lipid-binding domain in StAR and phosphatidylcholine transfer protein

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=83.93  E-value=2.7  Score=36.69  Aligned_cols=55  Identities=20%  Similarity=0.134  Sum_probs=42.6

Q ss_pred             ceeeeEEeeecCCCCceEEEEEEEeecCC-CCCHHHHHHHHhcchhHHHHHHHHHHH
Q 008769            8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRL-NFPAIFLERIIRSDLPVNLQALACRAE   63 (554)
Q Consensus         8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~-~~P~~lve~~~~~dlp~nL~Ai~~~ae   63 (554)
                      ...+.|++++.++ .+|+++++..+.+.. .+...+++..++++++..|.+|++.||
T Consensus        86 ~~~~~~~~~~~~~-~~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E  141 (141)
T cd07822          86 DGEHSFELEPLGD-GGTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARAE  141 (141)
T ss_pred             eEEEEEEEEEcCC-CcEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence            4678899999643 468898887776532 223467999999999999999999886

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins

Probab=83.07  E-value=3.3  Score=40.97  Aligned_cols=59  Identities=10%  Similarity=0.004  Sum_probs=47.4

Q ss_pred             CCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHH
Q 008769            4 GDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE   63 (554)
Q Consensus         4 GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae   63 (554)
                      |....+.|.|...+.. ..+|.++|.+.+=|+-++|..+|...+.+-+-..|..+|+...
T Consensus       148 ~~~~~~g~~~~~~~~~-~~~t~v~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~  206 (208)
T cd08903         148 GFNHPCGCFCEPVPGE-PDKTQLVSFFQTDLSGYLPQTVVDSFFPASMAEFYNNLTKAVK  206 (208)
T ss_pred             EeeeccEEEEEECCCC-CCceEEEEEEEeccCCCcCHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            3344467777655543 4578999999999999999999999999888899999988764

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.

>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins

Probab=82.69  E-value=3.9  Score=39.99  Aligned_cols=55  Identities=15%  Similarity=0.039  Sum_probs=48.1

Q ss_pred             ceeeeEEeeecC-CCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHH
Q 008769            8 KFEGKWSIKSGT-RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRA   62 (554)
Q Consensus         8 ~f~G~W~l~~~~-~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~a   62 (554)
                      .+.|-|.++|.+ +..+|.++|.+.+=|+-++|..+|-..+.+-+-.-+.+||+..
T Consensus       150 ~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~lr~~~  205 (206)
T cd08867         150 NHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMIPQSLVESAMPSNLVNFYTDLVKGV  205 (206)
T ss_pred             eecCEEEEEECCCCCCceEEEEEEEeccCCCCcHHHHHhhhhhhHHHHHHHHHHhc
Confidence            356899999876 3467999999999999999999999999999999999998753

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=82.44  E-value=3.1  Score=37.94  Aligned_cols=54  Identities=7%  Similarity=-0.020  Sum_probs=37.5

Q ss_pred             ceeeeEEeeecCCCCceEEEEEEEeecCCCC---CHHHHHHHHhcchhHHHHHHHHHHH
Q 008769            8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF---PAIFLERIIRSDLPVNLQALACRAE   63 (554)
Q Consensus         8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~---P~~lve~~~~~dlp~nL~Ai~~~ae   63 (554)
                      ..+..|++.+  .+.+|.|+|++++...-.+   .-.+|....++-+..-+.+|++++|
T Consensus        89 ~~~~~~~l~~--~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e  145 (146)
T cd07823          89 EATVTLRLSP--AGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLA  145 (146)
T ss_pred             EEEEEEEEEe--cCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence            3455788888  3457999999977654433   3344677777777777777887775

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>COG2005 ModE N-terminal domain of molybdenum-binding protein [General function prediction only]

Probab=81.98  E-value=0.81  Score=42.76  Aligned_cols=47  Identities=26%  Similarity=0.479  Sum_probs=38.8

Q ss_pred             HHHhcChhhHHHHHHHhCCHHHHHHHcCchhhccccCCCCCCCChHhHHHHHHH
Q 008769          399 QLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISR  452 (554)
Q Consensus       399 ~Lr~~gr~dl~~ai~~~GG~~~va~~l~l~~a~~~r~p~gyw~~~~~l~~ei~~  452 (554)
                      .....||.-|.++|..+|-..+.|+.||++  ||     .-|+-++++++=+.+
T Consensus        15 ~~~g~g~~~LL~~I~etGSIs~AAk~~GiS--Yk-----~AW~~i~~~n~~~~~   61 (130)
T COG2005          15 LRAGPGRIELLKAIAETGSISAAAKAAGIS--YK-----SAWDYIKALNRLLGE   61 (130)
T ss_pred             cccCchHHHHHHHHHHhCCHHHHHHHcCCC--HH-----HHHHHHHHHHHHhCC
Confidence            345689999999999999999999999999  74     568877777764444

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=81.68  E-value=2.2  Score=41.70  Aligned_cols=51  Identities=12%  Similarity=0.106  Sum_probs=43.9

Q ss_pred             ceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHH
Q 008769            8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC   60 (554)
Q Consensus         8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~   60 (554)
                      .+.|-|.|+|.. ..+|.++|.+.+-|+=++|.-| .+....=||.+|..||.
T Consensus       142 ~~~~g~~i~p~~-~~~t~vty~~~~Dp~G~iP~wl-~N~~~~~~~~~~~~l~~  192 (197)
T cd08869         142 VLASRYLIEPCG-SGKSRVTHICRVDLRGRSPEWY-NKVYGHLCARELLRIRD  192 (197)
T ss_pred             EEeeeEEEEECC-CCCeEEEEEEEECCCCCCCcee-ecchHhHHHHHHHHHHh
Confidence            367999999975 3578999999999999999888 66777889999999886

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains

Probab=81.28  E-value=3.2  Score=42.08  Aligned_cols=53  Identities=21%  Similarity=0.303  Sum_probs=47.5

Q ss_pred             eeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769           11 GKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS   65 (554)
Q Consensus        11 G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~   65 (554)
                      |.|.+.+.  ..+|.++|...+-|.-++|.-+|...-++..|.-|..+.......
T Consensus       175 g~~~~t~~--~~~~~ity~~~~dPgG~iP~wvvn~~~k~~~P~~l~~~~~~~~~~  227 (235)
T cd08872         175 GNQEITRD--NILCKITYVANVNPGGWAPASVLRAVYKREYPKFLKRFTSYVQEK  227 (235)
T ss_pred             CcccccCC--CCeEEEEEEEEeCCCCCccHHHHHHHHHhhchHHHHHHHHHHHHh
Confidence            77888882  558999999999999999999999999999999999998887653

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	554
3tvr_A	173	Crystal Structure Of Streptomyces Coelicolor Polyke		6e-04
3tl1_A	159	Crystal Structure Of The Streptomyces Coelicolor Wh		6e-04

>pdb|3TVR|A Chain A, Crystal Structure Of Streptomyces Coelicolor Polyketide AromataseCYCLASE WHIE-Orfvi Length = 173

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 172 ITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLHA 228
           IT+ AP+  VWN+    E  P +    A  ++L R+++KV     +     G ++  +  
Sbjct: 23  ITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDKVTFRLTMHPDADGKVWSWVSE 82
Query: 229 RVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEA 287
           RV   +     + +  ++VE G F      W + +  +  T+++++ +  M+ ++ + +A
Sbjct: 83  RVADPV----TRTVRAQRVETGPFQYMNIVWEYAET-AEGTVMRWTQDFAMKPDAPVDDA 137
Query: 288 IMEEVIYEDLPSNLCAIRDYVEKREGDNSLAN 319
            M + I  +  + +  IRD +E+  G+   A+
Sbjct: 138 WMTDNINRNSRTQMALIRDRIEQAAGERRTAS 169

>pdb|3TL1|A Chain A, Crystal Structure Of The Streptomyces Coelicolor Whie Orfvi Polyketide AromataseCYCLASE Length = 159

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 172 ITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLHA 228
           IT+ AP+  VWN+    E  P +    A  ++L R+++KV     +     G ++  +  
Sbjct: 9   ITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDKVTFRLTMHPDADGKVWSWVSE 68
Query: 229 RVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEA 287
           RV   +     + +  ++VE G F      W + +  +  T+++++ +  M+ ++ + +A
Sbjct: 69  RVADPV----TRTVRAQRVETGPFQYMNIVWEYAET-AEGTVMRWTQDFAMKPDAPVDDA 123
Query: 288 IMEEVIYEDLPSNLCAIRDYVEKREGDNSLAN 319
            M + I  +  + +  IRD +E+  G+   A+
Sbjct: 124 WMTDNINRNSRTQMALIRDRIEQAAGERRTAS 155

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	554
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	1e-25
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	9e-04
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	3e-25
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	1e-05
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	5e-20
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	3e-10
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2le1_A	151	Uncharacterized protein; structural genomics, nort	9e-05

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A Length = 159

 Score =  102 bits (255), Expect = 1e-25
 Identities = 33/152 (21%), Positives = 71/152 (46%), Gaps = 9/152 (5%)

Query: 171 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLH 227
            IT+ AP+  VWN+    E  P +    A  ++L R+++KV     +     G ++  + 
Sbjct: 8   EITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDKVTFRLTMHPDADGKVWSWVS 67

Query: 228 ARVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSE 286
            RV     +   + +  ++VE G F      W + +     T+++++ +  M+ ++ + +
Sbjct: 68  ERVA----DPVTRTVRAQRVETGPFQYMNIVWEYAETA-EGTVMRWTQDFAMKPDAPVDD 122

Query: 287 AIMEEVIYEDLPSNLCAIRDYVEKREGDNSLA 318
           A M + I  +  + +  IRD +E+  G+   A
Sbjct: 123 AWMTDNINRNSRTQMALIRDRIEQAAGERRTA 154

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A Length = 159

 Score = 39.1 bits (91), Expect = 9e-04
 Identities = 7/62 (11%), Positives = 18/62 (29%)

Query: 3   DGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRA 62
            G F+     W        +    + +  + P       ++   I  +    +  +  R 
Sbjct: 85  TGPFQYMNIVWEYAETAEGTVMRWTQDFAMKPDAPVDDAWMTDNINRNSRTQMALIRDRI 144

Query: 63  ER 64
           E+
Sbjct: 145 EQ 146

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 Length = 147

 Score =  100 bits (251), Expect = 3e-25
 Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 6/144 (4%)

Query: 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 227
           V A   + AP   V+ +    E L   +  +   ++++RE  + R           +   
Sbjct: 4   VRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGKKVRWL 63

Query: 228 ARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSV--ESKMQKNSLLS 285
                D          F   EGDFD ++G W+F   G   T +  ++  E  +     L 
Sbjct: 64  EEEEWDD---ENLRNRFFSPEGDFDRYEGTWVFLPEG-EGTRVVLTLTYELTIPIFGGLL 119

Query: 286 EAIMEEVIYEDLPSNLCAIRDYVE 309
             ++++++ E++ S L  + + V 
Sbjct: 120 RKLVQKLMQENVESLLKGLEERVL 143

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 Length = 147

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 1   MVDGDFKKFEGKWSIKSGTRSS--TTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQAL 58
             +GDF ++EG W        +    TL+YE+ +          ++++++ ++   L+ L
Sbjct: 79  SPEGDFDRYEGTWVFLPEGEGTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGL 138

Query: 59  ACRAE 63
             R  
Sbjct: 139 EERVL 143

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A Length = 169

 Score = 86.6 bits (214), Expect = 5e-20
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 9/160 (5%)

Query: 171 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLH 227
           SI V AP   VW+V    E  PE+    A ++IL ++ +        +    G ++  + 
Sbjct: 8   SIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGRVWEWVS 67

Query: 228 ARVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSE 286
            RV     ++  + +   +VE G F      W +  +    T +++  E  M+  +    
Sbjct: 68  HRVP----DKGSRTVRAHRVETGPFAYMNLHWTYRAVAG-GTEMRWVQEFDMKPGAPFDN 122

Query: 287 AIMEEVIYEDLPSNLCAIRDYVEKREGDNSLANDSVETTN 326
           A M   +     +N+  I+  +E R  +      SV  T 
Sbjct: 123 AHMTAHLNTTTRANMERIKKIIEDRHREGQRTPASVLPTE 162

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP} Length = 172

 Score = 58.4 bits (141), Expect = 3e-10
 Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 18/169 (10%)

Query: 166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMV 225
           R V  ++TV AP   VW V+       +I P     +IL        +            
Sbjct: 5   RHVEHTVTVAAPADLVWEVLADVLGYADIFPPTEKVEILEEGQGYQVVRLHVDVAGEINT 64

Query: 226 LHARVVMDICEQHEQEISFEQVEGD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSL 283
             +R  +D      + I++ Q+E         G+W    L +  T L  + +    + + 
Sbjct: 65  WTSRRDLD---PARRVIAYRQLETAPIVGHMSGEWRAFTLDAERTQLVLTHDFVT-RAAG 120

Query: 284 LSEAI------------MEEVIYEDLPSNLCAIRDYVEKREGDNSLAND 320
               +            +E V+  +  ++L A+    E+R         
Sbjct: 121 DDGLVAGKLTPDEAREMLEAVVERNSVADLNAVLGEAERRVRAAGGVGT 169

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A Length = 155

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 19/146 (13%), Positives = 52/146 (35%), Gaps = 10/146 (6%)

Query: 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 227
           V  ++T+  P  +++ V      LP ++ +L   ++L  + ++  +           +  
Sbjct: 6   VRDAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDDKRSRWTVEAPA------PLGT 59

Query: 228 ARVVMDICEQHE-QEISFEQVEGDFDSFQGKWLFEQL-GSHHTLLKYSVESKMQKNSL-- 283
                ++      + I++  + G      G+ LF    G+  T +   +  +    S   
Sbjct: 60  VSWEAELTADEPGKRIAWRSLPGARIENSGEVLFRPAPGARGTEVVVRLTYRPPGGSAGA 119

Query: 284 LSEAIMEEVIYEDLPSNLCAIRDYVE 309
           +   +  +   + L  +L   +   E
Sbjct: 120 VIARMFNQEPSQQLRDDLMRFKREQE 145

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 4e-05
 Identities = 66/452 (14%), Positives = 131/452 (28%), Gaps = 146/452 (32%)

Query: 131 KWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVH-----RCVVASITVKAPVSEVWNVM 185
           K  V   VC              + D       +       C      ++     ++ + 
Sbjct: 163 KTWVALDVCL-------SYKVQCKMDF-----KIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 186 TAYETLPEIVPNLAISKILSRENNKVRILQE--GCKGLLYM--VLHARVV--MDI-CEQH 238
             + +  +   N+   +I S +    R+L+       LL +  V +A+     ++ C   
Sbjct: 211 PNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--- 266

Query: 239 EQEISFEQV------EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEV 292
                  ++      +   D             HH++     E K    SLL + +  + 
Sbjct: 267 -------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK----SLLLKYL--DC 313

Query: 293 IYEDLPSNLCAIRDYV------EKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSS 346
             +DLP  +               R+G  +      +   H    D LT          S
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATW-----DNWKHVN-CDKLTT------IIES 361

Query: 347 SDNEDLVDSETPNSFKQR-------P---RVPGLQTNIEVLKAELLEFISKHGQEGFMPM 396
           S     ++   P  +++        P    +P     + ++  ++++          M +
Sbjct: 362 S-----LNVLEPAEYRKMFDRLSVFPPSAHIP-TIL-LSLIWFDVIK-------SDVMVV 407

Query: 397 RKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYK---------HRK-------PKGY- 439
             +L K     VEK            S+ ++ L  K         HR        PK + 
Sbjct: 408 VNKLHK--YSLVEK-----QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 440 --------WDN---------LENLE--EEISRFQRSWGMDPSFMPSRKSFERAGRYDIAR 480
                    D          L+N+E  E ++ F R   +D  F+  +K         I  
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-RMVFLDFRFL-EQK---------IRH 509

Query: 481 ALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDK 512
               W     +   L  +L+    + +I  + 
Sbjct: 510 DSTAWNASGSILNTL-QQLK--FYKPYICDND 538

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Length = 151

 Score = 42.1 bits (98), Expect = 9e-05
 Identities = 19/151 (12%), Positives = 50/151 (33%), Gaps = 15/151 (9%)

Query: 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 227
           +  S+ V AP ++VW ++  +  +    P ++   +     +       G + +      
Sbjct: 4   LRRSVEVAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTP-----GAERVFGAGTE 58

Query: 228 ARVVMDICEQHEQE--ISFEQVEGDF--DSFQGKWLFEQLGSHHTLLKYS--VESKMQKN 281
             +V  + E+ E    + +   +  F   + +           H  + ++   +   +  
Sbjct: 59  EELVERLVERDESARRLVYTMPDPPFPITNHRAVLEVVPRDDRHCTVVWTAMFDCSPETA 118

Query: 282 SLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 312
             L   I + V        L A+ +   + E
Sbjct: 119 RELESVIGDGVFA----VGLNALAERYGRLE 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	554
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	99.86
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	99.85
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	99.85
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	99.83
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	99.8
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	99.69
3qsz_A	189	STAR-related lipid transfer protein; structural ge	99.68
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	99.61
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	99.59
2le1_A	151	Uncharacterized protein; structural genomics, nort	99.59
2pcs_A	162	Conserved protein; structural genomics, unknown fu	99.56
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	99.5
3ijt_A	155	SMU.440, putative uncharacterized protein; hypothe	99.5
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	99.47
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	99.47
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	99.29
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	99.28
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	99.27
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	99.25
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	99.22
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	99.21
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	99.19
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	99.16
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	99.13
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	99.12
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	99.12
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	99.11
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	99.04
2qpv_A	156	Uncharacterized protein ATU1531; structural genomi	99.03
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	99.01
3fo5_A	258	Thioesterase, adipose associated, isoform BFIT2; o	99.0
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	99.0
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	98.98
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	98.98
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	98.95
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	98.94
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	98.93
1xuv_A	178	Hypothetical protein MM0500; alpha-beta protein, n	98.85
2il5_A	171	Hypothetical protein; structural genomics, APC2365	98.82
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	98.81
2leq_A	146	Uncharacterized protein; start domains, structural	98.79
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	98.76
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	98.76
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	98.75
1z94_A	147	Conserved hypothetical protein; NESG, CV1439, stru	98.74
2lcg_A	142	Uncharacterized protein; start domain, structural	98.66
2ldk_A	172	Uncharacterized protein; structural genomics, nort	98.65
1xfs_A	178	NC_840354, conserved hypothetical protein; structu	98.64
2lgh_A	144	Uncharacterized protein; AHSA1, start domain, COG3	98.64
2lf2_A	175	Uncharacterized protein; NESG, structural genomics	98.61
3pu2_A	164	Uncharacterized protein; SRPBCC superfamily, PSI-b	98.6
2l8o_A	144	Uncharacterized protein; mixed alpha-beta protein,	98.59
1xn6_A	143	Hypothetical protein BC4709; structural genomics,	98.59
3q6a_A	135	Uncharacterized protein; structural genomics, PSI-	98.59
2l9p_A	164	Uncharacterized protein; structural genomics, nort	98.52
2lak_A	160	AHSA1-like protein RHE_CH02687; NESG, structural g	98.49
2nn5_A	184	Hypothetical protein EF_2215; structural genomics,	98.46
3put_A	166	Hypothetical conserved protein; structural genomic	98.41
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	98.41
3rd6_A	161	MLL3558 protein; structural genomics, PSI-biology,	98.41
3q64_A	162	MLL3774 protein; structural genomics, PSI-biology,	98.39
3eli_A	152	AHSA1, AHA1 domain protein; alpha-beta protein, st	98.36
3uid_A	168	Putative uncharacterized protein; SRPBCC superfami	98.28
3q63_A	151	MLL2253 protein; structural genomics, PSI-biology,	98.26
2k5g_A	191	Uncharacterized protein; structural genomiccs, pro	98.25
1vjh_A	122	BET V I allergen family; structural genomics, cent	98.23
1xn5_A	146	BH1534 unknown conserved protein; structural genom	98.19
2kew_A	152	Uncharacterized protein YNDB; start domain, resona	97.99
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	97.96
4fpw_A	181	CALU16; structural genomics, PSI-biology, northeas	97.93
1x53_A	145	Activator of 90 kDa heat shock protein ATPase homo	97.85
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	97.68
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	97.63
1zxf_A	155	CALC; SELF-sacrificing resistance protein, structu	97.62
2luz_A	192	CALU16; structural genomics, northeast structural	97.62
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	97.62
3ni8_A	158	PFC0360W protein; heat shock, malaria, ATPase, str	97.58
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	97.47
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	97.3
3qsz_A	189	STAR-related lipid transfer protein; structural ge	97.05
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	96.63
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	95.99
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	95.76
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	95.57
2le1_A	151	Uncharacterized protein; structural genomics, nort	95.54
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	95.34
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	94.06
2lio_A	136	Uncharacterized protein; structural genomics, nort	94.02
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	92.94
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	92.46
3ijt_A	155	SMU.440, putative uncharacterized protein; hypothe	92.39
2pcs_A	162	Conserved protein; structural genomics, unknown fu	92.05
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	91.99
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	91.62
2ffs_A	157	Hypothetical protein PA1206; 7-stranded beta sheet	90.58
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	88.51
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	88.26
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	84.82

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=99.86  E-value=9.4e-21  Score=171.12  Aligned_cols=140  Identities=16%  Similarity=0.247  Sum_probs=117.7

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC----CEEEEE-EEeccceeEEEEEEEEEEEEeecCCC
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN----NKVRIL-QEGCKGLLYMVLHARVVMDICEQHEQ  240 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g----~~vrv~-q~g~~gil~~~~~~rvvLdv~E~~~r  240 (554)
                      ..++.++.|+||+++||++++|+++||+|+|+|.+++++++.+    +..... ..+..++ ...|++++++    .+++
T Consensus         2 ~~~~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~v~~----~~~~   76 (148)
T 1t17_A            2 HRHVVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFL-REKFATRVRR----DKDA   76 (148)
T ss_dssp             CEEEEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTSS-CCEEEEEEEE----ETTT
T ss_pred             CEEEEEEEecCCHHHHHHHHHHHhhHHhhCCCcCeeEEEEecCCCCCceEEEEEEEEecce-eEEEEEEEEE----cCCC
Confidence            4688999999999999999999999999999999999998644    333332 3344443 3567776654    3555


Q ss_pred             -eEEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 008769          241 -EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  313 (554)
Q Consensus       241 -rIsf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~  313 (554)
                       +|.|++++|+|+.+.|.|+|++.++| |+|+|.+++++.  ++++..+++.++...+..++++|++|+++.++
T Consensus        77 ~~i~~~~~~G~f~~~~g~w~f~~~~~g-t~v~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~~~f~~r~~~~~~  147 (148)
T 1t17_A           77 RSIDVSLLYGPFKRLNNGWRFMPEGDA-TRVEFVIEFAFK--SALLDAMLAANVDRAAGKLIACFEARAQQLHG  147 (148)
T ss_dssp             CEEEEEESSTTSSCEEEEEEEEEETTE-EEEEEEEEECCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cEEEEEECCCChhccEEEEEEEECCCC-eEEEEEEEEEEC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence             99999999999999999999999876 999999999984  56788999999999999999999999998875

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}

Probab=99.85  E-value=4.3e-20  Score=172.31  Aligned_cols=147  Identities=20%  Similarity=0.251  Sum_probs=119.9

Q ss_pred             ceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEE-EeccceeEEEEEEEEEEEEeecCCCeE
Q 008769          164 VHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ-EGCKGLLYMVLHARVVMDICEQHEQEI  242 (554)
Q Consensus       164 ~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q-~g~~gil~~~~~~rvvLdv~E~~~rrI  242 (554)
                      .|..++.++.|+||+++||++|+|+++||+|+|+|.+++++++.++..++.. .+..++ ...|+++++++   .++++|
T Consensus         3 ~M~~v~~si~I~ap~~~V~~~v~D~~~~p~~~P~~~~~~v~~~~~~~~~~~~~~~~~G~-~~~~~s~~~~~---~~~~~i   78 (172)
T 3tfz_A            3 HMRHVEHTVTVAAPADLVWEVLADVLGYADIFPPTEKVEILEEGQGYQVVRLHVDVAGE-INTWTSRRDLD---PARRVI   78 (172)
T ss_dssp             CCEEEEEEEEESSCHHHHHHHHHCGGGHHHHCSSEEEEEEEEEETTEEEEEEEEEETTE-EEEEEEEEEEE---TTTTEE
T ss_pred             CCcEEEEEEEeCCCHHHHHHHHHhHHHHHhhCcccceEEEEecCCCEEEEEEEEecCCE-EEEEEEEEEEe---CCCCEE
Confidence            4778999999999999999999999999999999999999998887654432 355564 35666665432   345789


Q ss_pred             EEEEE--ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCc-----------cchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769          243 SFEQV--EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNS-----------LLSEAIMEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       243 sf~~v--eGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg-----------~LP~~Lver~vre~l~~~L~ALR~rAE  309 (554)
                      .|+++  +|+|+.+.|.|+|++.++++|+|+|.++|++.++.           ..+...+.+.+.+++..+|.+||+++|
T Consensus        79 ~~~~~~~~gpf~~~~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~l~~~~~~~L~~lk~~aE  158 (172)
T 3tfz_A           79 AYRQLETAPIVGHMSGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVVERNSVADLNAVLGEAE  158 (172)
T ss_dssp             EEEEEECCTTEEEEEEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCChhhcEEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHHHhcccHHHHHHHHHHHH
Confidence            99999  58999999999999998789999999999975322           112346888999999999999999999


Q ss_pred             hhhCC
Q 008769          310 KREGD  314 (554)
Q Consensus       310 r~~~~  314 (554)
                      ++...
T Consensus       159 ~~~~~  163 (172)
T 3tfz_A          159 RRVRA  163 (172)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            87654

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A

Probab=99.85  E-value=4.2e-20  Score=172.32  Aligned_cols=143  Identities=22%  Similarity=0.416  Sum_probs=119.9

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEE---EeccceeEEEEEEEEEEEEeecCCCeEE
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ---EGCKGLLYMVLHARVVMDICEQHEQEIS  243 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q---~g~~gil~~~~~~rvvLdv~E~~~rrIs  243 (554)
                      +++.++.|+||+++||++++|+++||+|+|+|.++++++++++..++..   .+..++. ..|+++++++   .++++|.
T Consensus         4 ~v~~si~I~a~~~~V~~lV~Dve~yP~~~p~~~~~~vl~~~~~~~~~rl~~~~~~~G~~-~~~ts~~~~d---~~~~~I~   79 (159)
T 3tl1_A            4 HTDNEITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDKVTFRLTMHPDADGKV-WSWVSERVAD---PVTRTVR   79 (159)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEEECSSEEEEEEEECCCTTSCC-CEEEEEEEEE---TTTTEEE
T ss_pred             eeEEEEEecCCHHHHHHHHHhHHHhhhhhhCceEEEEEecCCCEEEEEEEEEeccCceE-EEEEEEEEEc---CCCCEEE
Confidence            5789999999999999999999999999999999999999877665543   3555643 4666665433   3457999


Q ss_pred             EEEE-ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 008769          244 FEQV-EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD  314 (554)
Q Consensus       244 f~~v-eGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~~  314 (554)
                      |+++ +|+|+.+.|.|+|+++++ +|+|+|.++|++.++.+++...+.+.+...+...|++||+++|+..+.
T Consensus        80 ~~~~~~gPf~~l~g~W~f~p~~~-gt~V~~~~df~~~~~~p~~~~~~~~~~~~~~~~~L~~lK~~~E~~~~~  150 (159)
T 3tl1_A           80 AQRVETGPFQYMNIVWEYAETAE-GTVMRWTQDFAMKPDAPVDDAWMTDNINRNSRTQMALIRDRIEQAAGE  150 (159)
T ss_dssp             EEESSCTTEEEEEEEEEEEEETT-EEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEccCCChhhccCEEEEEECCC-CEEEEEEEEEEecCCCCCCHHHHHHHHHhhHHHHHHHHHHHHhhhhhh
Confidence            9987 799999999999999987 699999999998655556666788899999999999999999987654

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A

Probab=99.83  E-value=1.8e-19  Score=169.77  Aligned_cols=144  Identities=20%  Similarity=0.338  Sum_probs=120.5

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEE---EeccceeEEEEEEEEEEEEeecCCCeE
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ---EGCKGLLYMVLHARVVMDICEQHEQEI  242 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q---~g~~gil~~~~~~rvvLdv~E~~~rrI  242 (554)
                      .+++.++.|+||+++||++|+|+++||+|+|+|.++++++++++.+++..   ...++.. ..|+++.+++   .+.++|
T Consensus         3 ~~v~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~~~~~~~~~~~~~~~~~l~~~~~~~G~~-~~~ts~~~~d---~~~~~I   78 (169)
T 3tvq_A            3 ARTDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGRV-WEWVSHRVPD---KGSRTV   78 (169)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCGGGHHHHCTTEEEEEEEEEETTEEEEEEEECCCTTSCC-CEEEEEEEEE---GGGTEE
T ss_pred             CeEEEEEEecCCHHHHHHHHHhhhHHHHHHhheeEEEEEecCCCEEEEEEEEEecCCCeE-EEEEEEEEEc---CCCcEE
Confidence            46889999999999999999999999999999999999999888665543   2445543 4666665433   446799


Q ss_pred             EEEE-EecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 008769          243 SFEQ-VEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD  314 (554)
Q Consensus       243 sf~~-veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~~  314 (554)
                      .|++ ++|+|+.+.|.|+|++.++| |+|+|.++|++.++.+++..++.+.+...+...|++||+++|+..+.
T Consensus        79 ~~~~l~~gPf~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~~~~~~av~~~~~~~L~~LK~~aE~~~~~  150 (169)
T 3tvq_A           79 RAHRVETGPFAYMNLHWTYRAVAGG-TEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDRHRE  150 (169)
T ss_dssp             EEEESSCTTEEEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCChhheeeEEEEEECCCC-EEEEEEEEEEecCCCcccHHHHHHHHHhhHHHHHHHHHHHHhhhhhh
Confidence            9986 46999999999999999887 99999999988655567788899999999999999999999987655

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=99.80  E-value=2.2e-18  Score=150.03  Aligned_cols=139  Identities=19%  Similarity=0.285  Sum_probs=109.8

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEE-EEEeccceeEEEEEEEEEEEEeecCCCeEEE
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI-LQEGCKGLLYMVLHARVVMDICEQHEQEISF  244 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv-~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf  244 (554)
                      ..++.+++|+||+++||++|+|+++||+|+|+|.+++++...+++... +.....+. ...|+.+++.   ..++++|.|
T Consensus         2 ~~~~~~~~i~ap~~~V~~~l~d~~~~~~w~p~~~~~~~~~~~~~g~~~~~~~~~~g~-~~~~~~~~~~---~~~~~~i~~   77 (147)
T 2d4r_A            2 PEVRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGK-KVRWLEEEEW---DDENLRNRF   77 (147)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEEEEEEEEEETTE-EEEEEEEEEE---ETTTTEEEE
T ss_pred             CeEEEEEEeCCCHHHHHHHHhChhhhhhhcccccEEEEEEeCCCccEEEEEEEeCCc-eEEEEEEEEE---cCCCcEEEE
Confidence            468899999999999999999999999999999999999876554322 22233342 2345444321   246789999


Q ss_pred             EEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccch----HHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          245 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLS----EAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       245 ~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP----~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      ++++|++..+.|.|+|++.++| |+|+|.+++++.  +.++    ..++...++..+..+|++|++++|+.
T Consensus        78 ~~~~g~~~~~~~~~~~~~~~~g-T~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~~  145 (147)
T 2d4r_A           78 FSPEGDFDRYEGTWVFLPEGEG-TRVVLTLTYELT--IPIFGGLLRKLVQKLMQENVESLLKGLEERVLAA  145 (147)
T ss_dssp             EEEEESCSEEEEEEEEEECSSS-EEEEEEEEEECC--CTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EeccCChhheEEEEEEEECCCC-cEEEEEEEEecC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999888999999999876 999999999985  2334    34455778899999999999999985

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=99.69  E-value=6e-16  Score=141.71  Aligned_cols=140  Identities=16%  Similarity=0.212  Sum_probs=102.0

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEE
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE  245 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~  245 (554)
                      ..|+.+++|+||+++||++++|+++||+|+|+|.+++++..  +..+.......|...+.|+.+++.   ..++++|.|+
T Consensus         4 ~~v~~s~~I~ap~e~V~~~~~D~e~~p~w~p~~~~v~~~~~--~~~~~~~~~~~G~~~~~~~~~v~e---~~p~~~i~~~   78 (155)
T 3ggn_A            4 TVVRDAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDD--KRSRWTVEAPAPLGTVSWEAELTA---DEPGKRIAWR   78 (155)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHCGGGHHHHSTTCCEEEECSS--SEEEEEEECCTTTCEEEEEEEEEE---EETTTEEEEE
T ss_pred             cEEEEEEEEcCCHHHHHHHHhCHHHhHHHhhhceEEEEecC--CeeEEEEEecCCcceEEEEEEEEE---ecCCCEEEEE
Confidence            46899999999999999999999999999999999999854  333322222223123566665542   2478899999


Q ss_pred             EEecCCceeEEEEEEEEc-CCCeEEEEEEEEEEeccCccc---hHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          246 QVEGDFDSFQGKWLFEQL-GSHHTLLKYSVESKMQKNSLL---SEAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       246 ~veGdfr~f~G~W~Lepl-gdG~TrVtY~v~~eP~~gg~L---P~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      .++|++..+.|.|+|++. ++++|+|+|.++++|++ +++   ...+++....+.+...|+.||+.+|..
T Consensus        79 ~~~g~~~~~~g~~~F~~~~~~~gT~V~~~~~~~~~~-~~l~~~~~~~~~~~~~~~v~~~l~r~k~~~e~~  147 (155)
T 3ggn_A           79 SLPGARIENSGEVLFRPAPGARGTEVVVRLTYRPPG-GSAGAVIARMFNQEPSQQLRDDLMRFKREQELG  147 (155)
T ss_dssp             ECTTCSSCEEEEEEEEECSSSSCEEEEEEEEEC-----------------CHHHHHHHHHHHHHHHHHHT
T ss_pred             ECCCCCcceEEEEEEEECCCCCceEEEEEEEEECCC-cHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence            999998889999999998 56689999999999853 222   233456667888889999999999875

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=99.68  E-value=2.2e-15  Score=141.60  Aligned_cols=167  Identities=13%  Similarity=0.197  Sum_probs=124.7

Q ss_pred             CCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCC
Q 008769          130 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN  209 (554)
Q Consensus       130 ~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~  209 (554)
                      ++|++.++.+|+       +||.|..+     +.+...++++++|++|+++|++++.|++.||+|.|+|.++++++++++
T Consensus         3 ~~W~~~~~~~gv-------~v~~~~~~-----~~~~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~~~~~vle~~~~   70 (189)
T 3qsz_A            3 DGWSLAKDAEGI-------KVYVRNVE-----GSPLREFRGEVRLKAAADDVVKVLRDANAFRQWMPDVAASELLKATDT   70 (189)
T ss_dssp             CCCEEEEEETTE-------EEEEECCT-----TCSSCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEEEEECSS
T ss_pred             CCCEEEEcCCCE-------EEEEEeCC-----CCCeEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhcCEEEEEeecCC
Confidence            489999999999       99999322     335678999999999999999999999999999999999999998666


Q ss_pred             EEEEEEEeccc--eeEEEEEEEEEEEEeecCCCeEEEEEEecC-----------CceeEEEEEEEEcCCCeEEEEEEEEE
Q 008769          210 KVRILQEGCKG--LLYMVLHARVVMDICEQHEQEISFEQVEGD-----------FDSFQGKWLFEQLGSHHTLLKYSVES  276 (554)
Q Consensus       210 ~vrv~q~g~~g--il~~~~~~rvvLdv~E~~~rrIsf~~veGd-----------fr~f~G~W~LeplgdG~TrVtY~v~~  276 (554)
                      ...++......  +...-|.......  ..++..+.+.....+           +..+.|.|.|+| ++++|+|+|...+
T Consensus        71 ~~i~y~~~~~p~p~~~RD~v~~~~~~--~~~~g~~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~  147 (189)
T 3qsz_A           71 EQYHYLDNSAPWPVSNRDGVYHFTYE--KAGDGAITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHA  147 (189)
T ss_dssp             EEEEEEEECCSSSCCCEEEEEEEEEE--ECTTSCEEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEE
T ss_pred             ceEEEEEeecCCCcCCcceEEEEEEE--ECCCCeEEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEe
Confidence            55555431111  1111122111111  122334544433322           346789999999 8889999999999


Q ss_pred             EeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 008769          277 KMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  313 (554)
Q Consensus       277 eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~  313 (554)
                      +|+  +++|.++++.++...+..+|++||+++++..-
T Consensus       148 dp~--G~iP~~lvn~~~~~~~~~~l~~L~k~~~~~~~  182 (189)
T 3qsz_A          148 SPG--GSIPSWLANQTVVETPFGTLKALRSHLRQAHL  182 (189)
T ss_dssp             CSC--SSSCHHHHHHTTTHHHHHHHHHHHHHHTC---
T ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence            994  78999999999999999999999999987643

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=99.61  E-value=1.8e-14  Score=133.17  Aligned_cols=140  Identities=16%  Similarity=0.242  Sum_probs=105.1

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCc----ccccCcCCcEEEEEEecCCEEEEEE--Eeccce-eEEEEEEEEEEEEeecC
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYET----LPEIVPNLAISKILSRENNKVRILQ--EGCKGL-LYMVLHARVVMDICEQH  238 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~----yPewiP~V~sSrVL~r~g~~vrv~q--~g~~gi-l~~~~~~rvvLdv~E~~  238 (554)
                      ..++.+++|+|||++||++|+|+++    ||+|+|+      ...+++..+...  .+..+. .-..|+++++++   .+
T Consensus         7 i~v~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~------~~~~~~~~~~~~a~l~vg~~~~~~~~~s~~~~~---~~   77 (161)
T 3p9v_A            7 IELNRDLEIPASYDEVFDLLADVPKSASHFPKVDKL------VDLGNNAYRWEMEKVGVDKHAIQSVYACTYHAD---KE   77 (161)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE------EEEETTEEEEEECCBSSGGGCBCCEEEEEEEEE---TT
T ss_pred             EEEEEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE------EEcCCCceEEEEEEEeeeeEEEEEEEEEEEEEc---CC
Confidence            3488999999999999999999999    7777776      222334222211  122221 112666665433   23


Q ss_pred             CCeEEEEEEecCC-ceeEEEEEEEEcCCCeEEEEEEEEEEeccC-ccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 008769          239 EQEISFEQVEGDF-DSFQGKWLFEQLGSHHTLLKYSVESKMQKN-SLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD  314 (554)
Q Consensus       239 ~rrIsf~~veGdf-r~f~G~W~LeplgdG~TrVtY~v~~eP~~g-g~LP~~Lver~vre~l~~~L~ALR~rAEr~~~~  314 (554)
                      +++|.|++++|+| +.+.|.|+|+|.++|+|+|+|.++++++.+ ..+...++..++.+.+..+++++.+||++.|-+
T Consensus        78 ~~~I~~~~~~g~~~~~l~g~w~f~p~~~g~t~V~~~~~~e~~~pl~~ll~~~~~~~~~~~~~~~v~af~~ra~~~~~~  155 (161)
T 3p9v_A           78 AGKITWSPIKGEGNGVVSGSWTLSAKGDNATAVKFQTSAELTVPLPSLLKLAISPVIKHEFNSLVDTYMANLKKAFLE  155 (161)
T ss_dssp             TTEEEEEECTTSTTEEEEEEEEEEESSSSCEEEEEEEEEEEEECSCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             CCEEEEEEecCccceeEEEEEEEEECCCCeEEEEEEEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7899999999999 899999999999988899999999998511 224466788999999999999999999988765

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A

Probab=99.59  E-value=4.2e-14  Score=129.46  Aligned_cols=136  Identities=16%  Similarity=0.313  Sum_probs=105.1

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEE
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE  245 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~  245 (554)
                      -.+..+++|+|||++||++|+|+++||+|+|.+.+++++..  +.++.... ..+.   .+..+  ++..+..++++.|+
T Consensus         2 ~~v~~si~I~Ap~~~VW~~l~d~~~~~~w~p~v~~~~~~~G--G~vR~~~~-~~G~---~~~Er--l~~~D~~~~~~~y~   73 (146)
T 3f08_A            2 AHTTTSMEIFGSTEQVWQLIGGFNSLPDWLPYIPSSKLTEG--GRVRHLAN-PDGE---TIIER--LEVFNDKERYYTYS   73 (146)
T ss_dssp             CEEEEEEEESSCHHHHHHHHCSTTCHHHHCTTCCEEEEEGG--GTEEEEEC-TTSC---EEEEE--EEEEETTTTEEEEE
T ss_pred             CEEEEEEEEeCCHHHHHHHHhccccHHHhCCCeEEEEEeCC--CeEEEEEe-CCCC---EEEEE--EEEEeCCCCEEEEE
Confidence            35899999999999999999999999999999999999843  44443322 2331   22333  22333457899999


Q ss_pred             EEecCC--ceeEEEEEEEE-cCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 008769          246 QVEGDF--DSFQGKWLFEQ-LGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  312 (554)
Q Consensus       246 ~veGdf--r~f~G~W~Lep-lgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~  312 (554)
                      +++|++  +.+.++|+|.| .++++|+|+|...|+|.  + +....+...+...+...|++|++++|...
T Consensus        74 iv~g~~~~~~~~~~~~v~p~~~~~gt~v~w~~~~~p~--g-~~~~~~~~~~~~~~~~~L~~Lk~~~e~~~  140 (146)
T 3f08_A           74 IMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPV--A-VSDEEAINLVHGIYSDGLKALQHAFLDLE  140 (146)
T ss_dssp             EEECSSSEEEEEEEEEEEECSSTTCEEEEEEEEEEES--S-SCHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             EecCCCceeEEEEEEEEEEecCCCcEEEEEEEEEEeC--C-CCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            999864  68999999999 56778999999999983  2 44556778888899999999999988653

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}

Probab=99.59  E-value=2.3e-14  Score=129.62  Aligned_cols=139  Identities=11%  Similarity=0.158  Sum_probs=103.7

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCC---EEEEEEEeccceeEEEEEEEEEEEEeecCCCeE
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN---KVRILQEGCKGLLYMVLHARVVMDICEQHEQEI  242 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~---~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrI  242 (554)
                      ..++.+++|+|||++||++|+|+++||+|+|.+.+++++...++   .++.. ....+.   .+..++  ...+.+++++
T Consensus         2 ~~v~~si~I~ap~e~Vw~~l~d~~~~~~w~p~v~~~~~~~g~~~~~G~~r~~-~~~~G~---~~~e~i--~~~d~~~~~~   75 (151)
T 2le1_A            2 ATLRRSVEVAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTPGAERVF-GAGTEE---ELVERL--VERDESARRL   75 (151)
T ss_dssp             CEEEEEEEESSCHHHHHHHHTTSGGGGGTCTTCCCEEEESSCTTSTTCEEEE-SSSSSS---CEEEEE--EEEETTTTEE
T ss_pred             ceEEEEEEecCCHHHHHHHHhCcCcHHHhcCCceEEEEECCCCCCCCeEEEE-EeCCCC---EEEEEE--EEEeCCCCEE
Confidence            36899999999999999999999999999999999999865422   23322 112221   122222  2223457899


Q ss_pred             EEEEEecC--CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 008769          243 SFEQVEGD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  312 (554)
Q Consensus       243 sf~~veGd--fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~  312 (554)
                      .|++++|+  +..+.++|+|++.++++|+|+|..+|+|.+ ..++...+. .+...+...|++|++.+|+..
T Consensus        76 ~~~~~~g~~~~~~~~~~~~l~~~~~~gt~v~w~~~f~~~p-~~~~~~~~~-~~~~~~~~~L~~Lk~~~e~~~  145 (151)
T 2le1_A           76 VYTMPDPPFPITNHRAVLEVVPRDDRHCTVVWTAMFDCSP-ETARELESV-IGDGVFAVGLNALAERYGRLE  145 (151)
T ss_dssp             EEEEEECSSSEEEEEEEEEEEESSSSCEEEEEEEEEEECH-HHHHHHHHH-TTTTHHHHHHHHHHHHTTTTS
T ss_pred             EEEEecCCCCceeEEEEEEEEECCCCcEEEEEEEEEEecC-CCCCHHHHH-HHHHHHHHHHHHHHHHhhccc
Confidence            99999985  567899999999766789999999998710 124455566 778899999999999988764

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=99.56  E-value=1.6e-13  Score=124.72  Aligned_cols=145  Identities=12%  Similarity=0.114  Sum_probs=101.7

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEE
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ  246 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~  246 (554)
                      .++.++.|+||+++||++|+|+++||+|+|.|.+++++.  ++..........+.....|..++++. ...+++++.|..
T Consensus         4 ~i~~~~~i~ap~e~Vw~~l~D~e~~~~w~p~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~   80 (162)
T 2pcs_A            4 NGNGSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIG--EDKYKADLQIGIAAVKGKYDAIIEVT-DIKPPYHYKLLV   80 (162)
T ss_dssp             EEEEEEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEE--TTEEEEEEEECCGGGCEEEEEEEEEE-EEETTTEEEEEE
T ss_pred             EEeeEEEecCCHHHHHHHhcCHHHHHhhCCCceEeEEeC--CCeEEEEEEEEeeeEEEEEEEEEEEE-ecCCCcEEEEEE
Confidence            478899999999999999999999999999999888763  44443322211111223444443332 124567777765


Q ss_pred             Ee---cCCceeEEEEEEEEcCCCeEEEEEEEEEEeccC-ccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 008769          247 VE---GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKN-SLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD  314 (554)
Q Consensus       247 ve---Gdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~g-g~LP~~Lver~vre~l~~~L~ALR~rAEr~~~~  314 (554)
                      ..   +++..+.++|+|++.++++|+|+|.+++++.+. ..++..++....++.+...+++|++++|+...+
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~~~gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e~~~~~  152 (162)
T 2pcs_A           81 NGEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAKSKQE  152 (162)
T ss_dssp             EEEETTEEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             EecCCCccEEEEEEEEEEecCCCcEEEEEEEEEEECCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence            42   233467999999997667899999999887421 123566788888888999999999999986554

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=99.50  E-value=1.2e-12  Score=117.46  Aligned_cols=140  Identities=11%  Similarity=0.175  Sum_probs=98.6

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEE
Q 008769          165 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  244 (554)
Q Consensus       165 ~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf  244 (554)
                      ...++.+++|+||+++||++++|+++||+|+|+|.+++ +  .++..........+.....+..++++. ...++++|.|
T Consensus        12 ~m~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~p~~~~~~-~--~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~i~~   87 (157)
T 2ns9_A           12 KVRYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVE-V--EDGSFTIELRLSLGPLRGDARVRASFE-DLEKPSKATV   87 (157)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEE-E--ETTEEEEEEEEESSSSEEEEEEEEEEE-EEETTTEEEE
T ss_pred             EEEEeeEEEEcCCHHHHHHHHcCHHHHHhhCCCceEEE-E--CCCEEEEEEEEEEcceeEEEEEEEEEE-ecCCCcEEEE
Confidence            34699999999999999999999999999999998777 3  445444332211121223444444331 1136788887


Q ss_pred             EEE-ec---CCceeEEEEEEEEcCCCeEEEEEEEEEEeccC-ccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          245 EQV-EG---DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKN-SLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       245 ~~v-eG---dfr~f~G~W~LeplgdG~TrVtY~v~~eP~~g-g~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      +.. .|   ++ .+.++|+|++.+ ++|+|+|..++++.+. ..+...++...+++.+...+++||+++|+
T Consensus        88 ~~~~~~~~~~~-~~~~~~~l~~~~-~gT~v~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~lk~~~e~  156 (157)
T 2ns9_A           88 KGSGRGAGSTL-DFTLRFAVEPSG-GGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGE  156 (157)
T ss_dssp             EEEEECSSEEE-EEEEEEEEEEET-TEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEecCCCccE-EEEEEEEEEeCC-CcEEEEEEEEEEECcCHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            632 33   33 368999999987 6899999998886421 12445578888888899999999998874

>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A

Probab=99.50  E-value=5.5e-13  Score=123.59  Aligned_cols=140  Identities=13%  Similarity=0.100  Sum_probs=99.7

Q ss_pred             ccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEe--cCCEEEEEEEeccceeEEEEEEEEEEEEeec
Q 008769          160 ENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR--ENNKVRILQEGCKGLLYMVLHARVVMDICEQ  237 (554)
Q Consensus       160 e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r--~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~  237 (554)
                      .|+..+..++.+|.|+|||++||++|+|+++||+|.|.|..+++...  .|...++...  .+. .+.+  ++  . ...
T Consensus        12 ~~g~~~~~i~~si~I~Appe~VW~~ltD~~~~~~W~p~v~~~~~~G~~~~G~~~~~~~~--~~~-~~~~--~v--~-~~~   83 (155)
T 3ijt_A           12 QMGRGSMKFSFELAVNTKKEDAWTYYSQVNQWFVWEGDLEQISLEGEFTTGQKGKMKME--DMP-ELAF--TL--V-EVR   83 (155)
T ss_dssp             ---CCCEEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEESSSSSTTCEEEEEET--TSC-CEEE--EE--C-CCB
T ss_pred             ccCCCcEEEEEEEEEcCCHHHHHHHHhCcccccccchhhEeeeccCCCCCCCEEEEEeC--CCC-cEEE--EE--E-EEe
Confidence            36777889999999999999999999999999999999988875321  2333333322  221 1222  21  1 224


Q ss_pred             CCCeEEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHH-HHHHHHhhHHHHHHHHHHHHHh
Q 008769          238 HEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAI-MEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       238 ~~rrIsf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~L-ver~vre~l~~~L~ALR~rAEr  310 (554)
                      +++++.|...- ++..+.+.|+|++.++++|+|++...++-  ..+.|..+ +.+.+.++++..|++||++||+
T Consensus        84 p~~~~~~~~~~-p~~~~~~~h~l~p~~~ggTrvt~~~~~~G--~~~~~~~~~~~~~i~~~~~~~l~~LK~~aE~  154 (155)
T 3ijt_A           84 ENQCFSDLTAT-PFGNVLFEHEILENPDGTISLRHSVSLTD--SDTTEEALAFLKQIFADVPESVGKLKQILET  154 (155)
T ss_dssp             TTTEEEEEEEE-TTEEEEEEEEEEECTTSCEEEEEEEEESC--CSCCHHHHHHHHHHHTTHHHHHHHHHHHHTC
T ss_pred             CCcEEEEEEec-CCeEEEEEEEEEEcCCCcEEEEEEEEEEC--CCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            67889987543 44577899999998778999999999852  12113322 4578999999999999999986

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=99.47  E-value=3.3e-12  Score=121.72  Aligned_cols=167  Identities=5%  Similarity=-0.070  Sum_probs=122.5

Q ss_pred             CCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEc-CCHHHHHHHHhCcCcccccCcCCcEEEEEEecC
Q 008769          130 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSREN  208 (554)
Q Consensus       130 ~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~-APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g  208 (554)
                      ++|++.++.+|+       +||.+..+     +.+...++++++|+ +|+++|+++|.|.+.+++|.+.|.++++++..+
T Consensus        28 ~~W~~~~~~~~v-------~v~~~~~~-----~~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~~~   95 (214)
T 1ln1_A           28 ADWQLLVETSGI-------SIYRLLDK-----KTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQECNG   95 (214)
T ss_dssp             TTCEEEEEETTE-------EEEEEEET-----TTTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEETT
T ss_pred             CCcEEEEECCCe-------EEEEeccC-----CCCcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHhhEEEeccCC
Confidence            489999999999       99999533     35678899999995 999999999999999999999999999998855


Q ss_pred             CEEEEEEE-ecc-ceeEEEEEEEEEEEEeecCCCe---EEEEEEe--------cCCc--eeEEEEEEEEcCCCeEEEEEE
Q 008769          209 NKVRILQE-GCK-GLLYMVLHARVVMDICEQHEQE---ISFEQVE--------GDFD--SFQGKWLFEQLGSHHTLLKYS  273 (554)
Q Consensus       209 ~~vrv~q~-g~~-gil~~~~~~rvvLdv~E~~~rr---Isf~~ve--------Gdfr--~f~G~W~LeplgdG~TrVtY~  273 (554)
                       ...++.. ... .+-..-|.........+..+..   +..+.++        |.++  .+.|.|.|+|.++++|+|+|.
T Consensus        96 -~~i~~~~~~~p~p~~~RD~v~~~~~~~~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~  174 (214)
T 1ln1_A           96 -ETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMY  174 (214)
T ss_dssp             -EEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEE
T ss_pred             -CEEEEEEEEcCCCCCCceEEEEEEEEecccCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEE
Confidence             3333332 211 1111011111111111112222   2233332        2222  578999999998889999999


Q ss_pred             EEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          274 VESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       274 v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      .+++|+  +++|.++++.++...+...|++|+++++++
T Consensus       175 ~~~Dp~--G~iP~~l~n~~~~~~~~~~l~~l~k~~~~y  210 (214)
T 1ln1_A          175 YFDNPG--GQIPSWLINWAAKNGVPNFLKDMARACQNY  210 (214)
T ss_dssp             EEECCS--SCCCHHHHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred             EEECCC--CcccHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence            999994  789999999999999999999999999865

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}

Probab=99.47  E-value=1.9e-12  Score=120.84  Aligned_cols=136  Identities=19%  Similarity=0.242  Sum_probs=104.7

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEE-EEEEecC----CEEEEEEEeccceeEEEEEEEEEEEEeecCCC
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAIS-KILSREN----NKVRILQEGCKGLLYMVLHARVVMDICEQHEQ  240 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sS-rVL~r~g----~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~r  240 (554)
                      ..+..+++|+|||+.||+++.|+++| .|+|.+.++ ++++.++    +.++..  +  +.    ...+  ++..+..++
T Consensus         2 ~~v~~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~e~~eg~~~~~vGsvR~~--g--g~----v~Er--l~~~D~~~~   70 (160)
T 3p51_A            2 PKVYNSIVVDAPVERVWSRIRNFHDF-SWAPSLIKSCKKVGGGGGYSVGARRLL--N--GE----FLDT--LIAYSEIER   70 (160)
T ss_dssp             CEEEEEEEESSCHHHHHHHHCCTTCC-TTCTTTCCCEEEESSCCTTCTTCEEEE--T--TT----EEEE--EEEEETTTT
T ss_pred             CEEEEEEEECCCHHHHHHHHhCcCCC-eEccCceEEEEEEecCCCCCCCCEEEE--C--CE----EEEE--EEEEcCCCc
Confidence            45899999999999999999999999 999999998 8886543    234443  3  32    1222  233345578


Q ss_pred             eEEEEEEecCC-------ceeEEEEEEEEcC-CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 008769          241 EISFEQVEGDF-------DSFQGKWLFEQLG-SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  312 (554)
Q Consensus       241 rIsf~~veGdf-------r~f~G~W~Leplg-dG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~  312 (554)
                      .+.|++++|++       +.+.++|+|.|.+ +++|.|+|...|++..      .++..++...+...|++|++++|+..
T Consensus        71 ~~sY~ii~g~l~~~~~~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~------~~~~~~~~~~~~~~L~~Lk~~~e~~~  144 (160)
T 3p51_A           71 RIMYSMDEGPSPVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWESAS------TEAVEYMNTVYRSLLADLAAEFTSES  144 (160)
T ss_dssp             EEEEEEEECSTTSSTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESC------SHHHHHHHHHHHHHHHHHHHHSCTTT
T ss_pred             EEEEEEecCCCcccccceeEEEEEEEEEEecCCCCEEEEEEEEEEeCH------HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999975       4799999999986 6799999999999842      16677888888999999999999866


Q ss_pred             CCCCcc
Q 008769          313 GDNSLA  318 (554)
Q Consensus       313 ~~~~~~  318 (554)
                      ..+.++
T Consensus       145 ~~~~~~  150 (160)
T 3p51_A          145 RRSEWI  150 (160)
T ss_dssp             CC----
T ss_pred             ccchHH
Confidence            654444

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=99.29  E-value=9e-11  Score=113.32  Aligned_cols=163  Identities=13%  Similarity=0.123  Sum_probs=116.0

Q ss_pred             CCceeec-ccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHH-hCcCcccccCcCCcEEEEEEec
Q 008769          130 SKWGVFG-QVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVM-TAYETLPEIVPNLAISKILSRE  207 (554)
Q Consensus       130 ~~W~~~~-~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVL-TDyE~yPewiP~V~sSrVL~r~  207 (554)
                      ++|++.+ +.+|+       .||.+..      .+..+.++++.+|++|+++|+++| .|++..++|.+.|.++++++.-
T Consensus        31 ~gW~~~~~~~~gv-------~vy~~~~------~~~g~~~k~~~~v~~~~~~v~~~l~~d~~~r~~Wd~~~~~~~vle~~   97 (221)
T 3p0l_A           31 EGWKKESQQDNGD-------KVMSKVV------PDVGKVFRLEVVVDQPMERLYEELVERMEAMGEWNPNVKEIKVLQKI   97 (221)
T ss_dssp             TTCEEEEECTTSC-------EEEEEEC------SSSCEEEEEEEEESSCHHHHHHHHTTTGGGTTTSCTTCSEEEEEEEC
T ss_pred             CCCeEeeecCCCc-------EEEEEEc------CCCceEEEEEEEEcCCHHHHHHHHHhccchhhhcCcchheEEEEEec
Confidence            5899996 88999       9999943      232377888999999999999998 7999999999999999999885


Q ss_pred             CC-EEEEEEE-ecc---ceeEEEEEEEEEEEEeecCCCeEEE-EEEe--------cCCc--eeEEEEEEEEcCCC--eEE
Q 008769          208 NN-KVRILQE-GCK---GLLYMVLHARVVMDICEQHEQEISF-EQVE--------GDFD--SFQGKWLFEQLGSH--HTL  269 (554)
Q Consensus       208 g~-~vrv~q~-g~~---gil~~~~~~rvvLdv~E~~~rrIsf-~~ve--------Gdfr--~f~G~W~LeplgdG--~Tr  269 (554)
                      ++ ...+++. ...   .+-..-|..-....  ...+..+.. ..++        |.++  .+.+.|.++|.+++  +|+
T Consensus        98 ~~~t~I~y~~~~~~~~~~v~~RDfv~~r~~~--~~~~~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~  175 (221)
T 3p0l_A           98 GKDTFITHELAAEAAGNLVGPRDFVSVRCAK--RRGSTCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTK  175 (221)
T ss_dssp             SSSEEEEEEEECC---CCSCCEEEEEEEEEE--ECSSCEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETTEEEEEE
T ss_pred             CCCeEEEEEeeccccCCccCCceEEEEEEEE--EcCCeEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCCCCCcEE
Confidence            44 3333332 110   11111111100001  011222211 2222        2233  45688999999876  899


Q ss_pred             EEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769          270 LKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       270 VtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE  309 (554)
                      |+|..+++|+  |++|.++++..+...+...+++||++++
T Consensus       176 vt~~~~~Dp~--G~iP~~lvn~~~~~~~~~~~~~Lr~~~~  213 (221)
T 3p0l_A          176 LTWLLSIDLK--GWLPKSIINQVLSQTQVDFANHLRKRLE  213 (221)
T ss_dssp             EEEEECEECC--SSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEEecCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999994  7899999999999999999999999987

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=99.28  E-value=5.4e-10  Score=103.62  Aligned_cols=141  Identities=11%  Similarity=0.138  Sum_probs=104.6

Q ss_pred             EEEEEEEEEcCCHHHHHHHHh-CcCc-ccccCcCCcEEEEEEecC--CEEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769          166 RCVVASITVKAPVSEVWNVMT-AYET-LPEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  241 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLT-DyE~-yPewiP~V~sSrVL~r~g--~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr  241 (554)
                      ..+..++.|+|||+.||+++. |+.+ +|+|+|.|+++++++.++  +.++.+... .+...-.+..+  ++..+..++.
T Consensus         3 ~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~~Gsir~~~~~-~G~~~~~~kEr--l~~~D~~~~~   79 (157)
T 1tw0_A            3 FVFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITAN-EGDKTSFVLQK--VDAIDEANLG   79 (157)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHHTGGGGGGGSCSSEEEEEEEESSSSTTCEEEEEEE-ETTEEEEEEEE--EEEEETTTTE
T ss_pred             EEEEEEEEecCCHHHHHHHHhcCcchhhhhHHhhccEEEEEeCCCCCCeEEEEEee-CCCccceEEEE--EEEEeccCCE
Confidence            457899999999999999999 9985 699999999999998754  235544332 23211123333  3444567889


Q ss_pred             EEEEEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          242 ISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       242 Isf~~veGd-----fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      +.|++++|+     ++.+.++|+|.|.++++|.+++..+|++..+...++..++ ...+.+..++++|.+.+-+
T Consensus        80 ~~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yll~  152 (157)
T 1tw0_A           80 YDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRD-DALAKGAGFFKAIEGYVLA  152 (157)
T ss_dssp             EEEEEEECTTSCTTEEEEEEEEEEEECSSSSEEEEEEEEEEESTTCCCCHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence            999999998     5689999999998777899999999999754433443333 4567788888888887754

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=99.27  E-value=2.7e-10  Score=105.69  Aligned_cols=142  Identities=9%  Similarity=0.097  Sum_probs=105.1

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHh-CcCc-ccccCcCCcEEEEEEecC--CEEEEEEEeccceeEEEEEEEEEEEEeecCCC
Q 008769          165 HRCVVASITVKAPVSEVWNVMT-AYET-LPEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQ  240 (554)
Q Consensus       165 ~r~V~asI~I~APpe~VWaVLT-DyE~-yPewiP~V~sSrVL~r~g--~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~r  240 (554)
                      ...+..++.|+|||++||+++. |+.+ +|+|+|.++++++++.++  +.++.+... .+...-.+..+  ++..+..++
T Consensus         3 ~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eGdgg~Gsir~~~~~-~g~~~~~~kEr--l~~~D~~~~   79 (158)
T 2qim_A            3 VFTFQDEYTSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGNGGPGTIKKLTFI-EGGESKYVLHK--IEAIDEANL   79 (158)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTEEEEEEEESSSSTTCEEEEEEE-ETTEEEEEEEE--EEEEEGGGT
T ss_pred             CEEEEEEEEecCCHHHHHHHHhcCccchhhhHHhhCcEEEEEecCCCCCeEEEEEEc-CCCcceeEEEE--EEEEecCCC
Confidence            3568899999999999999999 9996 599999999999998754  235444332 23211123333  333456789


Q ss_pred             eEEEEEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          241 EISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       241 rIsf~~veGd-----fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      .+.|++++|+     ++.+.++|+|.|.++++|.+++..+|++..+...++..++ ...+.+..++++|.+.+-+
T Consensus        80 ~~~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yll~  153 (158)
T 2qim_A           80 GYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGK-AAKARGDAFFKAIESYLSA  153 (158)
T ss_dssp             EEEEEEEEESSCCCSEEEEEEEEEEEECSTTCEEEEEEEEEEESTTCCCCHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEeccCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence            9999999997     5588999999998777899999999999754433443333 4567788888888887754

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A

Probab=99.25  E-value=1.9e-10  Score=106.86  Aligned_cols=141  Identities=16%  Similarity=0.266  Sum_probs=104.5

Q ss_pred             EEEEEEEEEcCCHHHHHHHHh-CcCc-ccccCc-CCcEEEEEEecC--CEEEEEEEeccceeEEEEEEEEEEEEeecCCC
Q 008769          166 RCVVASITVKAPVSEVWNVMT-AYET-LPEIVP-NLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQ  240 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLT-DyE~-yPewiP-~V~sSrVL~r~g--~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~r  240 (554)
                      ..+..++.|+||++.||+++. |+.+ +|.|+| .++++++++.++  +.++.+... .+...-.+..+  ++..+..++
T Consensus         3 ~~~~~e~~i~ap~~~vw~~~~~d~~~~~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~-~G~~~~~~kEr--l~~~D~~~~   79 (159)
T 1e09_A            3 FTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFG-EGSQYGYVKHK--IDSIDKENY   79 (159)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEEC-CSSSCEEEEEE--EEEEETTTT
T ss_pred             EEEEEEEEecCCHHHHHHHHhcCccccchhhChhhccEEEEEeCCCCCceEEEEEec-CCCCceEEEEE--EEEEcCCCC
Confidence            457899999999999999999 9985 799999 678999998754  235554432 33110123333  344456788


Q ss_pred             eEEEEEEecCC-----ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          241 EISFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       241 rIsf~~veGdf-----r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      .+.|++++|++     +.+.++|+|.|.++++|.+++..+|++.++..+++.-++ ...+.+..++++|.+.+-+
T Consensus        80 ~~~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yll~  153 (159)
T 1e09_A           80 SYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVK-AGKEKASNLFKLIETYLKG  153 (159)
T ss_dssp             EEEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecccCcccceEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence            99999999974     589999999998777899999999999754434443333 5677788888888888754

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*

Probab=99.22  E-value=2e-10  Score=113.20  Aligned_cols=174  Identities=12%  Similarity=0.162  Sum_probs=114.5

Q ss_pred             CCCceeecccccCCCCcccceEEEeeeccccccCCce-EEEEEEEEEc-CCHHHHHHHHhCcCcccccCcCCcEEEEEEe
Q 008769          129 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVH-RCVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSR  206 (554)
Q Consensus       129 ~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~-r~V~asI~I~-APpe~VWaVLTDyE~yPewiP~V~sSrVL~r  206 (554)
                      ..+|++..+.+|+       +||.|...    .+|.. ..+++...|. +++++|++++.|++.+++|.+.+.++++++.
T Consensus        46 ~~~W~~~~~~~gv-------~vy~~~~~----~~g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~  114 (255)
T 2e3n_A           46 DANWQLVVEEGEM-------KVYRREVE----ENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHVVET  114 (255)
T ss_dssp             CTTEEEEEEETTE-------EEEEECCE----ETTEECCCEEEEEEEETCCHHHHHHHHHCGGGHHHHCCSEEEEEEEEE
T ss_pred             CCCcEEEEeCCCE-------EEEEEEcC----CCCceeeeEEEEEEEcCCCHHHHHHHHhCcchHhhhhhhcceeEEEEE
Confidence            3589999999999       99999422    12321 2466666665 9999999999999999999999999999988


Q ss_pred             -cCCEEEEEEE-ec-cceeE--EEEEEE---------------EEEEEeec----CC--CeEEEEE----EecCCc-eeE
Q 008769          207 -ENNKVRILQE-GC-KGLLY--MVLHAR---------------VVMDICEQ----HE--QEISFEQ----VEGDFD-SFQ  255 (554)
Q Consensus       207 -~g~~vrv~q~-g~-~gil~--~~~~~r---------------vvLdv~E~----~~--rrIsf~~----veGdfr-~f~  255 (554)
                       +++...++.. .. ..+-.  +.+...               +++...-.    |+  ..+++..    ..|.+- ...
T Consensus       115 i~~~~~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P~~~g~VR~~~~~~~~~~~~i~~~~  194 (255)
T 2e3n_A          115 LADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPE  194 (255)
T ss_dssp             EETTEEEEEEEECCCTTSCCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTTSCCCSSSEECEEEEEEEEEEEEC---
T ss_pred             cCCCCEEEEEEeecCCCcCCceeEEEEEEEeccccccCCCCEEEEEEeccCCCCCCCCCCCEEEEEEeeeeeeeEeccCC
Confidence             5665444432 11 11110  111110               11100000    00  1122221    111110 112


Q ss_pred             EEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCC
Q 008769          256 GKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNS  316 (554)
Q Consensus       256 G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~~~~  316 (554)
                      |.|.|++ ++++|+|+|..+++|+  |++|.++++.++...++..|+.|++++++...++.
T Consensus       195 g~~~l~~-~~~~t~vt~~~~~Dp~--G~iP~~lvn~~~~~~~~~~l~~L~k~v~~~~~~~~  252 (255)
T 2e3n_A          195 GNQEISR-DNILCKITYVANVNPG--GWAPASVLRAVAKREYPKFLKRFTSYVQEKTAGKP  252 (255)
T ss_dssp             CCCCCCG-GGEEEEEEEEEEEECS--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             CCccccc-CCCcEEEEEEEEeCCC--CccCHHHHHHHHhccccHHHHHHHHHHHHhccCCC
Confidence            6677766 4568999999999994  78999999999999999999999999998877644

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C

Probab=99.21  E-value=8.1e-10  Score=105.75  Aligned_cols=142  Identities=15%  Similarity=0.236  Sum_probs=102.8

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC---CEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEE
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN---NKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS  243 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g---~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIs  243 (554)
                      ....+.+|+||+++||+++.||.+++.|.|.+.++ +++..+   +.++..... .+.-.-....+  |+..+...+.+.
T Consensus        28 ~~~v~~~I~Apa~~VW~~v~df~~l~~w~P~V~s~-~~eG~~ggvGsvR~lt~~-~G~p~~~vkEr--L~~~D~~~~~~s  103 (183)
T 3rt2_A           28 SSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRC-VVQGKKLEVGSVREVDLK-SGLPATKSTEV--LEILDDNEHILG  103 (183)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEE-EESSSCCCTTCEEEEEEC-CSSTTCEEEEE--EEEEETTTTEEE
T ss_pred             EEEEEEEEeCCHHHHHHHHhCcCchhhcCccceEE-EeeCCCCCCCcEEEEEeC-CCCccceEEEE--EEEEECCCCEEE
Confidence            44555699999999999999999999999999999 555422   234443322 22100112233  344445578999


Q ss_pred             EEEEecC--CceeEEEEEEEEcC-CC--eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 008769          244 FEQVEGD--FDSFQGKWLFEQLG-SH--HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD  314 (554)
Q Consensus       244 f~~veGd--fr~f~G~W~Leplg-dG--~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~~  314 (554)
                      |++++|+  ++.+.++.+|.|.+ +|  +|.|+|...|+|..+  ...--+..++...+...|++|++.+|+....
T Consensus       104 Y~Iieg~lp~~~y~ati~v~p~~~dG~~gt~V~Ws~~fd~~~g--~~~e~~~~~~~~i~~~~L~~L~~~~e~~~~~  177 (183)
T 3rt2_A          104 IRIVGGDHRLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEG--NTKEETCFFVEALIQCNLNSLADVTERLQAE  177 (183)
T ss_dssp             EEEEEESCSCTTCEEEEEEEEEEETTEEEEEEEEEEEEECCTT--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCcceeEEEEEEEEEEecCCCCCCEEEEEEEEEEcCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999996  55899999999986 55  699999999997532  2334566777888888999999999987654

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=99.19  E-value=4.7e-10  Score=103.72  Aligned_cols=140  Identities=10%  Similarity=0.127  Sum_probs=103.8

Q ss_pred             EEEEEEEEEcCCHHHHHHHHh-CcCc-ccccCcCCcEEEEEEecC--CEEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769          166 RCVVASITVKAPVSEVWNVMT-AYET-LPEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  241 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLT-DyE~-yPewiP~V~sSrVL~r~g--~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr  241 (554)
                      ..+..++.|+|||+.||+++. |+.+ +|+|+|.|+++++++.++  +.++.+... .+...-.+..+  ++..+..++.
T Consensus         3 ~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~~Gsir~~~~~-~G~~~~~~kEr--l~~~D~~~~~   79 (155)
T 1icx_A            3 FAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAI-HDGHTSFVLHK--LDAIDEANLT   79 (155)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESSSSTTCEEEEEEE-SSSSEEEEEEE--EEEEEGGGTE
T ss_pred             EEEEEEEEecCCHHHHHHHHhcCcchhcchhhhhccEEEEEecCCCCCeEEEEEEe-cCCcceeEEEE--EEEEeccCCE
Confidence            457899999999999999999 9985 699999999999998754  245544432 33211123333  3344567889


Q ss_pred             EEEEEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          242 ISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       242 Isf~~veGd-----fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      +.|++++|+     ++.+.++|+|.|.++++|.+++..+|++.++. +++ ..-+.+.+.+..++++|.+++-+
T Consensus        80 ~~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~-~~~-~~~~~~~~~~~~~~k~ie~yll~  151 (155)
T 1icx_A           80 YNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDV-LSE-TVRDQAKFKGLGLFKAIEGYVLA  151 (155)
T ss_dssp             EEEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSSS-CCH-HHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCC-CCH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999997     55899999999987667999999999997544 433 22234567788888888887654

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=99.16  E-value=7.8e-10  Score=107.25  Aligned_cols=166  Identities=11%  Similarity=0.039  Sum_probs=116.4

Q ss_pred             CCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEec-
Q 008769          129 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRE-  207 (554)
Q Consensus       129 ~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~-  207 (554)
                      .++|++.++.+||       +||.+..+     +...+.++++.+|++|+++|+++|.|.+..++|.++|.++++++.- 
T Consensus        42 ~~~W~~~~~~~gv-------~vy~~~~~-----~~~~~~~k~~~~v~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~id  109 (224)
T 1jss_A           42 EDEWRVAKKAKDV-------TVWRKPSE-----EFNGYLYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFE  109 (224)
T ss_dssp             GGGCEEEEEETTE-------EEEEEECS-----SSSSEEEEEEEEESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECS
T ss_pred             CCCCEEEEECCCE-------EEEEEecc-----CCCceEEEEEEEEeCCHHHHHHHHhCcccccccccceeeEEEEEEcC
Confidence            4589999999999       99999422     2233667889999999999999999999999999999999999874 


Q ss_pred             CCEEEEEEEecc--c--eeEEEEEEEEEEEEeecCCCe-EEEEEEe------cCCc--eeEEEEEEEEcCCC--eEEEEE
Q 008769          208 NNKVRILQEGCK--G--LLYMVLHARVVMDICEQHEQE-ISFEQVE------GDFD--SFQGKWLFEQLGSH--HTLLKY  272 (554)
Q Consensus       208 g~~vrv~q~g~~--g--il~~~~~~rvvLdv~E~~~rr-Isf~~ve------Gdfr--~f~G~W~LeplgdG--~TrVtY  272 (554)
                      ++...+++....  +  +-..-|.......  ...+.. +....++      |.++  ...|.|.++|++++  .|+|+|
T Consensus       110 ~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~--~~~~~~vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~  187 (224)
T 1jss_A          110 ENCCVMRYTTAGQLLNIISPREFVDFSYTV--GYEEGLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTG  187 (224)
T ss_dssp             TTEEEEEEEECCBTTTTBCCEEEEEEEEEE--EETTEEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEE
T ss_pred             CCeEEEEEEcccccCCCCCCCeEEEEEEEE--EcCCeEEEEEeeeecCCCCCCCEEEEecccEEEEEEcCCCCCceEEEE
Confidence            343333433111  1  1111111111001  111222 1112222      3333  45688999998653  799999


Q ss_pred             EEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          273 SVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       273 ~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      .++.+|+  |++|.++++.++...+...+++||+++++
T Consensus       188 ~~~~Dp~--G~iP~~lvn~~~~~~~~~~~~~Lr~~~~~  223 (224)
T 1jss_A          188 YIQTDLR--GMIPQSAVDTAMASTLANFYSDLRKGLRK  223 (224)
T ss_dssp             EECEECC--SCCCHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             EEEeCCC--CCccHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence            9999994  78999999999999999999999998754

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}

Probab=99.13  E-value=1.6e-09  Score=105.56  Aligned_cols=149  Identities=13%  Similarity=0.206  Sum_probs=108.9

Q ss_pred             ccCCceEEEEEEE--EEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC--CEEEEEEEeccceeEEEEEEEEEEEEe
Q 008769          160 ENGGVHRCVVASI--TVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDIC  235 (554)
Q Consensus       160 e~~g~~r~V~asI--~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g--~~vrv~q~g~~gil~~~~~~rvvLdv~  235 (554)
                      .|+....++..+|  +|+||+++||+++.||.+++.|.|.++++++ +.++  +.++.... ..+.-.-....+  |+..
T Consensus        44 ~h~p~~~k~~~~V~~~I~ApadkVW~lV~Df~~l~kW~P~V~s~ev-eGdg~vGsVR~vt~-~~G~p~~~vkEr--L~~l  119 (205)
T 3oqu_A           44 QHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRCTV-IGDPEIGSLREVNV-KSGLPATTSTER--LELL  119 (205)
T ss_dssp             CCCCCTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEEC-CSSCCTTCEEEEEE-CTTSSCSEEEEE--EEEE
T ss_pred             hcCCCCcEEEEEEeeEEcCCHHHHHHHHhCcCChhHcCccceEEEe-eCCCCCCcEEEEEE-cCCCccceEEEE--EEEE
Confidence            4677778889999  9999999999999999999999999999975 3332  23444332 122100112222  3444


Q ss_pred             ecCCCeEEEEEEecC--CceeEEEEEEEEcC-CC--eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          236 EQHEQEISFEQVEGD--FDSFQGKWLFEQLG-SH--HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       236 E~~~rrIsf~~veGd--fr~f~G~W~Leplg-dG--~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      +...+.+.|++++|+  ++.|.++++|.|.+ +|  .|.+.+...++|.. + ...--+..++...+...|++|++.+|+
T Consensus       120 Dde~~~~sYsIieG~lpv~~Y~ati~V~p~~~dG~~~T~v~ws~~~D~p~-g-~t~e~~~~~v~~v~~~gL~~L~~~~e~  197 (205)
T 3oqu_A          120 DDEEHILGIKIIGGDHRLKNYSSILTVHPEIIEGRAGTMVIESFVVDVPQ-G-NTKDETCYFVEALIRCNLKSLADVSER  197 (205)
T ss_dssp             ETTTTEEEEEEEEESSSCTTCEEEEEEEEECCCC-CEEEEEEEEEEECCT-T-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCEEEEEEEecCcceeEEEEEEEEEEccCCCCceEEEEEEEeccCCC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556789999999996  45899999999987 34  68888888888643 2 234456677788888899999999998


Q ss_pred             hhCC
Q 008769          311 REGD  314 (554)
Q Consensus       311 ~~~~  314 (554)
                      .+..
T Consensus       198 ~~~~  201 (205)
T 3oqu_A          198 LASQ  201 (205)
T ss_dssp             HHHH
T ss_pred             hhhc
Confidence            7643

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.12  E-value=8.1e-10  Score=103.53  Aligned_cols=143  Identities=13%  Similarity=0.191  Sum_probs=101.3

Q ss_pred             ccCCceEEEEEEEEEcCCHHHHHHH-HhCcCcccccCc-CCcEEEEEEec-CC--EEEEEEEeccceeEEEEEEEEEEEE
Q 008769          160 ENGGVHRCVVASITVKAPVSEVWNV-MTAYETLPEIVP-NLAISKILSRE-NN--KVRILQEGCKGLLYMVLHARVVMDI  234 (554)
Q Consensus       160 e~~g~~r~V~asI~I~APpe~VWaV-LTDyE~yPewiP-~V~sSrVL~r~-g~--~vrv~q~g~~gil~~~~~~rvvLdv  234 (554)
                      ++......+..++.|+||+++||++ +.|+..+|.|+| .|+++++++.+ ++  .++.+.....+.. ..+..+  ++.
T Consensus        11 ~~~~~~~k~~~ev~i~apa~kvw~~~~~d~~~lpk~~P~~i~s~~~~eGd~gg~Gsir~~~~~~gg~~-~~~kEr--l~~   87 (166)
T 2i9y_A           11 EASSLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEA-KVAKER--IEA   87 (166)
T ss_dssp             CCSSSEEEEEEEEEESSCHHHHHGGGSSCSSCCCCSCSSCCSSCCCCSCCSCSTTCCCEEEEEETTEE-EEEEEE--EEE
T ss_pred             cccCCccEEEEEEEecCCHHHHHHHHhcccccccccccccceEEEEEcCCCCCCCeEEEEEEecCCCc-eEEEEE--EEE
Confidence            5667788999999999999999999 569999999999 89999998765 22  3444433223311 123333  334


Q ss_pred             eecCCCeEEEEEEecC----CceeEEEEEEEEcCC-CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769          235 CEQHEQEISFEQVEGD----FDSFQGKWLFEQLGS-HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       235 ~E~~~rrIsf~~veGd----fr~f~G~W~Leplgd-G~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE  309 (554)
                      .+..++.+.|++++|+    ++.+.++|+|.|.++ ++|.|+|.+.|++..+. .|.+  . .+.+.+..++++|.+++-
T Consensus        88 iD~~~~~~~y~iieGd~~~~~~~~~~ti~v~p~~~g~gs~v~wt~~ye~~~~~-~~~p--~-~~~~~~~~~~k~ie~~l~  163 (166)
T 2i9y_A           88 VEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEE-VAHP--E-TLLQFCVEVSKEIDEHLL  163 (166)
T ss_dssp             EETTTTEEEEEECCTTGGGTEEEEEEEEEEEEEEETTEEEEEEEEEEEESSTT-TCCT--H-HHHHHHHHHHHHHHHHHH
T ss_pred             EeccCcEEEEEEEeCCCCCCeeEEEEEEEEEECCCCCCcEEEEEEEEEECCCC-CCCH--H-HHHHHHHHHHHHHHHHHh
Confidence            4567889999999998    468999999999743 37999999999975432 2222  1 223555667777766553

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=99.12  E-value=7.2e-09  Score=100.33  Aligned_cols=166  Identities=11%  Similarity=0.063  Sum_probs=117.6

Q ss_pred             CCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHH--hCcCcccccCcCCcEEEEEEec
Q 008769          130 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVM--TAYETLPEIVPNLAISKILSRE  207 (554)
Q Consensus       130 ~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVL--TDyE~yPewiP~V~sSrVL~r~  207 (554)
                      ++|++.++.+|+       .||.+..+     +.....++++.+|++|+++|+++|  .|.+..++|.+.|.++++++.-
T Consensus        43 ~~W~~~~~~~gv-------~v~~~~~~-----~~~~~~~k~~~~v~~~~~~v~~~l~~~d~~~r~~Wd~~~~~~~vle~i  110 (231)
T 2r55_A           43 AGWKICREGNGV-------SVSWRPSV-----EFPGNLYRGEGIVYGTLEEVWDCVKPAVGGLRVKWDENVTGFEIIQSI  110 (231)
T ss_dssp             SSCEEEECCSSE-------EEEEEECS-----SSSSEEEEEEEEESSCHHHHHHHHCC--CCSHHHHCTTCSEEEEEEEC
T ss_pred             CCCEEEEeCCCE-------EEEEEccC-----CCCCcEEEEEEEECCCHHHHHHHHHhhCcchhhhhccccceeEEEEEc
Confidence            489999999999       99999543     123567888999999999999999  9999999999999999999874


Q ss_pred             CC-EEEEEEEecc---c-eeEEEEEEEEEEEEee-cCCC-e-EEEEEEe--------cCCc--eeEEEEEEEEcC--CCe
Q 008769          208 NN-KVRILQEGCK---G-LLYMVLHARVVMDICE-QHEQ-E-ISFEQVE--------GDFD--SFQGKWLFEQLG--SHH  267 (554)
Q Consensus       208 g~-~vrv~q~g~~---g-il~~~~~~rvvLdv~E-~~~r-r-Isf~~ve--------Gdfr--~f~G~W~Leplg--dG~  267 (554)
                      ++ ...+++....   . +-..-|..   ++... ..+. . |....++        |.++  .+.+.|.++|.+  ++.
T Consensus       111 ~~~~~i~~~~~~~~~~~~v~~RDfv~---~r~~~~~~~g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~  187 (231)
T 2r55_A          111 TDTLCVSRTSTPSAAMKLISPRDFVD---LVLVKRYEDGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTK  187 (231)
T ss_dssp             SSSEEEEEEECCCBTTTTBCCEEEEE---EEEEEECTTSCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC--CCC
T ss_pred             CCCEEEEEEEeccccCCccCCCeEEE---EEEEEEcCCCEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCc
Confidence            43 3333433111   0 11111111   11111 1222 2 2344443        2233  446789999975  568


Q ss_pred             EEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 008769          268 TLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  312 (554)
Q Consensus       268 TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~  312 (554)
                      |.|+|..+++|+  |++|.++++..+...+...+++|+++++++.
T Consensus       188 t~vt~~~~~Dp~--G~iP~~lvn~~~~~~~~~~~~~Lr~~~~~~~  230 (231)
T 2r55_A          188 TNLVTFFHTDLS--GYLPQNVVDSFFPRSMTRFYANLQKAVKQFH  230 (231)
T ss_dssp             EEEEEEECEECC--SSCCHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             EEEEEEEEeCCC--CCccHHHHHHHHhHhHHHHHHHHHHHHHHhc
Confidence            999999999994  6899999999999999999999999998764

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=99.11  E-value=2.2e-09  Score=103.96  Aligned_cols=166  Identities=9%  Similarity=0.059  Sum_probs=115.7

Q ss_pred             CCceeeccc-ccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHH-HHHhCcCcccccCcCCcEEEEEEec
Q 008769          130 SKWGVFGQV-CRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVW-NVMTAYETLPEIVPNLAISKILSRE  207 (554)
Q Consensus       130 ~~W~~~~~~-~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VW-aVLTDyE~yPewiP~V~sSrVL~r~  207 (554)
                      ++|++.+.. +|+       .||.+..+     ..+ ..+++..+|++|+++|+ .++.|.+..++|.+.|.++++++.-
T Consensus        42 ~~W~~~~~~~~g~-------~vy~~~~~-----~~g-~~~k~~~~v~~~~~~v~~~~~~d~~~r~~Wd~~~~~~~vle~~  108 (229)
T 1em2_A           42 ENWKFEKNNEYGD-------TVYTIEVP-----FHG-KTFILKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRV  108 (229)
T ss_dssp             GGCEEEEECTTCC-------EEEEEEET-----TTE-EEEEEEEEESSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEE
T ss_pred             CCCEEEEecCCCC-------EEEEEecC-----CCC-ceEEEEEEecCCHHHHHHHHHhCccchhhcccccceEEEEEec
Confidence            489999987 799       99999432     122 25677888899999999 9999999999999999999999874


Q ss_pred             C-CEEEEEEEecc---c-eeEEEEEEEEEEEEeecCCCe-EEEEEEe--------cCCc--eeEEEEEEEEcC--CCeEE
Q 008769          208 N-NKVRILQEGCK---G-LLYMVLHARVVMDICEQHEQE-ISFEQVE--------GDFD--SFQGKWLFEQLG--SHHTL  269 (554)
Q Consensus       208 g-~~vrv~q~g~~---g-il~~~~~~rvvLdv~E~~~rr-Isf~~ve--------Gdfr--~f~G~W~Leplg--dG~Tr  269 (554)
                      + +...+++....   . +-..-|..-....  ...+.. +....++        |.++  .+.+.|.++|.+  ++.|.
T Consensus       109 ~~~t~I~~~~~~p~~~~~~~~RDfv~~r~~~--~~~~~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~  186 (229)
T 1em2_A          109 EDNTLISYDVSAGAAGGVVSPRDFVNVRRIE--RRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCT  186 (229)
T ss_dssp             TTTEEEEEEEECCBTTTTBCCEEEEEEEEEE--ECSSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEE
T ss_pred             CCCeEEEEEEecCcCCCCcCCCeeEEEEEEE--EcCCEEEEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEE
Confidence            3 33333443211   1 1111111110001  111221 2222332        2233  456789999975  46799


Q ss_pred             EEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 008769          270 LKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  312 (554)
Q Consensus       270 VtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~  312 (554)
                      |+|..+++|+  |++|.++++..+...+...+.+||+++++..
T Consensus       187 vt~~~~~Dp~--G~iP~~l~n~~~~~~~~~~~~~Lr~~~~~~~  227 (229)
T 1em2_A          187 FVWILNTDLK--GRLPRYLIHQSLAATMFEFAFHLRQRISELG  227 (229)
T ss_dssp             EEEEECEECC--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEEECCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999994  6799999999999999999999999998764

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*

Probab=99.04  E-value=1.8e-08  Score=96.94  Aligned_cols=149  Identities=13%  Similarity=0.170  Sum_probs=105.9

Q ss_pred             ccCCceEEEE--EEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC--CEEEEEEEeccceeEEEEEEEEEEEEe
Q 008769          160 ENGGVHRCVV--ASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDIC  235 (554)
Q Consensus       160 e~~g~~r~V~--asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g--~~vrv~q~g~~gil~~~~~~rvvLdv~  235 (554)
                      .|.-+..+..  ...+|+||++.||+++.|+.+.+.|.|.++++++++.++  +.++.+... .+.-.-....  +|+..
T Consensus        27 ~h~~~~~~~~~~~~~~I~Apa~~vW~lv~df~~~~~w~p~I~s~e~~eGdg~vGsVR~~t~~-~G~p~~~vkE--rL~~i  103 (190)
T 3kl1_A           27 QFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTVI-SGLPASTSTE--RLEFV  103 (190)
T ss_dssp             CCCCCTTEEEEEEEEEESSCHHHHHHHHHCTTCGGGTCSSEEEEEEEESSSSTTCEEEEEEC-SSSSCEEEEE--EEEEE
T ss_pred             ccCCCCCceeEEEEEEecCCHHHHHHHHhCCCChhHcccccCEEEEEcCCCCCCeEEEEEec-CCCccceEEE--EEEEE
Confidence            3444433333  444899999999999999999878999999999987654  345554432 2211012222  34444


Q ss_pred             ecCCCeEEEEEEecCC--ceeEEEEEEEEc-----CCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 008769          236 EQHEQEISFEQVEGDF--DSFQGKWLFEQL-----GSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  308 (554)
Q Consensus       236 E~~~rrIsf~~veGdf--r~f~G~W~Lepl-----gdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rA  308 (554)
                      +..++.+.|++++|++  +.+.+.-.+.+.     ++++|.|+|...|+|.. + ....-+..++..-+...|++|++.+
T Consensus       104 D~~~~~~sY~iieG~~~~~~Y~s~~~v~~~~~~~~~~~gt~V~Ws~~f~~p~-g-~~~e~~~~~~~~~~~~gL~~L~~~~  181 (190)
T 3kl1_A          104 DDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPE-G-NTEEDTKMFVDTVVKLNLQKLGVAA  181 (190)
T ss_dssp             ETTTTEEEEEEEEESSSCCSCEEEEEEEEEEC-CCCCEEEEEEEEEEEECCT-T-CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccCCEEEEEEEecCCccccEEEEEEEEecccccCCCCcEEEEEEEEEEcCC-C-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667899999999975  578888888774     56689999999999642 2 2333456777778889999999999


Q ss_pred             HhhhC
Q 008769          309 EKREG  313 (554)
Q Consensus       309 Er~~~  313 (554)
                      |+...
T Consensus       182 e~~~~  186 (190)
T 3kl1_A          182 TSAPM  186 (190)
T ss_dssp             HHSCC
T ss_pred             hcccc
Confidence            98744

>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8

Probab=99.03  E-value=2.8e-09  Score=99.19  Aligned_cols=129  Identities=13%  Similarity=0.149  Sum_probs=84.7

Q ss_pred             ceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecC--CCe
Q 008769          164 VHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH--EQE  241 (554)
Q Consensus       164 ~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~--~rr  241 (554)
                      .+...+.+|+|++|+++||++++|+++||+|++.|+++  +...++...+. .+-.+.    ...+++    ...  .-.
T Consensus        25 ~m~~~~~si~I~ap~eeVy~~~~D~e~lP~W~~~l~~~--~~~~~~~w~a~-~~p~G~----v~v~~~----~~~~~gv~   93 (156)
T 2qpv_A           25 VMQSRIIHLSVEKPWAEVYDFAANPGNMPRWAAGLAGG--LEADGEDWIAK-GGPLGE----VRVNFA----PHNEFGVI   93 (156)
T ss_dssp             CCCEEEEEEEESSCHHHHHHHHHCGGGGGGTCGGGTTC--CEEETTEEEEE-CSSSCE----EEEEEC----CCCSSCBC
T ss_pred             CccceEEEEEEcCCHHHHHHHHHChhhHHHHHHhhhhh--cccCCCcEEEe-ccCCCc----EEEEEe----cCCCceEE
Confidence            35567999999999999999999999999999999986  44555543332 122221    122221    111  112


Q ss_pred             EEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          242 ISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       242 Isf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      ..|....+.. ...+.+++.+.++ +|.|+|++...|  +...+.  + +.-...+...|++||+.+|.
T Consensus        94 d~~~~l~~g~-~~~~~~rv~p~g~-GTeV~~tl~~~p--g~~~~~--~-~~~~~~v~~dL~~LK~l~E~  155 (156)
T 2qpv_A           94 DHVVTLPDGL-KVYNALRVTPNGS-GTEVSFTLLRLE--GMTDED--F-EQDASAITADLEMLKSLLEA  155 (156)
T ss_dssp             CEEEECTTSC-EEEEEEEEEEETT-EEEEEEEEECCT--TCCHHH--H-HHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEecCCCc-EEEEEEEEEeCCC-CEEEEEEEecCC--CCChhh--h-hhhHHHHHHHHHHHHHHHhC
Confidence            3444433222 4567899999876 599999996544  233332  2 44455789999999999984

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*

Probab=99.01  E-value=1.5e-08  Score=93.86  Aligned_cols=136  Identities=10%  Similarity=0.273  Sum_probs=93.7

Q ss_pred             EEEEEEEEEcCCHHHHHHH-HhCcCcc-cccCcCC-cEEEEEEecCC--EEEEEEEeccceeEEEEEEEEEEEEeecCCC
Q 008769          166 RCVVASITVKAPVSEVWNV-MTAYETL-PEIVPNL-AISKILSRENN--KVRILQEGCKGLLYMVLHARVVMDICEQHEQ  240 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaV-LTDyE~y-PewiP~V-~sSrVL~r~g~--~vrv~q~g~~gil~~~~~~rvvLdv~E~~~r  240 (554)
                      ..+..+++|+|||+.||++ +.|+.++ |.|+|.+ +++++++.+++  .++.+... .+...-....+  ++..+..++
T Consensus         3 ~~~~~e~~i~a~a~kvw~~~v~d~~~l~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~-~g~~~~~~kEr--l~~iD~~~~   79 (155)
T 2flh_A            3 KEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFL-PEVSPSYQREE--ITEFDESSH   79 (155)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHTSCTTHHHHHCTTTEEEEEEEECSSSTTCEEEEEEC-TTSSSCEEEEE--EEEEETTTT
T ss_pred             cEEEEEEEecCCHHHHHHHHhcccccccchhccccceEEEEEcCCCCCCeEEEEEee-CCCCCcEEEEE--EEEEeCCCC
Confidence            4688999999999999999 7999999 9999976 56688876542  34444332 22011112222  344456778


Q ss_pred             eEEEEEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHH--hhHHHHHHHHHHHH
Q 008769          241 EISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIY--EDLPSNLCAIRDYV  308 (554)
Q Consensus       241 rIsf~~veGd-----fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vr--e~l~~~L~ALR~rA  308 (554)
                      .+.|++++|+     ++.+.++++|.|.++|+|.+++...|++.++ ..|. +  ....  +.+..++++|.+++
T Consensus        80 ~~~y~iieg~~l~~~~~~~~~~i~v~p~~~ggs~v~wt~~y~~~~~-~~~~-~--~~~~~~~~~~~~~k~ie~yl  150 (155)
T 2flh_A           80 EIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSD-IEEK-V--TPTKTSQSTLMYLRRLERYL  150 (155)
T ss_dssp             EEEEEEEEEGGGGTTCSEEEEEEEEEEEETTEEEEEEEEEEEC---------C--CHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEeccccccCceEEEEEEEEEECCCCCEEEEEEEEEEECCC-CccC-h--hHhhhHHHHHHHHHHHHHHH
Confidence            9999999986     5699999999998888899999999998643 2231 1  2233  55666777776665

>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}

Probab=99.00  E-value=6.6e-09  Score=104.21  Aligned_cols=164  Identities=8%  Similarity=0.127  Sum_probs=116.3

Q ss_pred             CCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEe-c
Q 008769          129 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR-E  207 (554)
Q Consensus       129 ~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r-~  207 (554)
                      .++|.+.++.+||       +||.+      +.++ ...++++.+|++|++.||++|.|.+..++|.+++.+++++++ +
T Consensus        65 ~~gW~~~~~~~gv-------~Vy~~------~~~~-~l~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~~~~~vle~id  130 (258)
T 3fo5_A           65 KDNWVLSSEISQV-------RLYTL------EDDK-FLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVD  130 (258)
T ss_dssp             CSCCEEEEEETTE-------EEEEE------ECSS-CEEEEEEEEESSCHHHHHHHHHCGGGGGGTCTTCCEEEEEEEEE
T ss_pred             cCCCEEEecCCCe-------EEEEE------ECCC-ceEEEEEEEEeCCHHHHHHHHhCchhHhHhhhhccEEEEEEEcC
Confidence            3589999999999       99997      3334 556789999999999999999999999999999999999976 4


Q ss_pred             CCEEEEEEEeccc----eeEEEEEEEEEEEEe---ecCCC--eEEEEEEe--------cCCc--eeEEEEEEEEcCCCeE
Q 008769          208 NNKVRILQEGCKG----LLYMVLHARVVMDIC---EQHEQ--EISFEQVE--------GDFD--SFQGKWLFEQLGSHHT  268 (554)
Q Consensus       208 g~~vrv~q~g~~g----il~~~~~~rvvLdv~---E~~~r--rIsf~~ve--------Gdfr--~f~G~W~LeplgdG~T  268 (554)
                      ++. .+++.....    +-..-|..   +...   ...+.  .|....+.        |.++  .+.+.|.++|.+++.|
T Consensus       131 ~~~-ivY~~~~p~~~~~v~~RDFV~---lr~~r~~~~~G~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~~t  206 (258)
T 3fo5_A          131 EDD-AIYHVTSPALGGHTKPQDFVI---LASRRKPCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLT  206 (258)
T ss_dssp             TTE-EEEEEEECCCTTCSSCEEEEE---EEEEECCSSTTCCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEETTEE
T ss_pred             CCe-EEEEEecCCccCCCCCCEEEE---EEEEEeccCCCCEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEECCCCCE
Confidence            443 333321111    11111211   1111   11222  34445544        2222  6679999999999999


Q ss_pred             EEEEEEEEEeccCccchHHHHHH-HHHhhHHHHHHHHHHHHHhhhC
Q 008769          269 LLKYSVESKMQKNSLLSEAIMEE-VIYEDLPSNLCAIRDYVEKREG  313 (554)
Q Consensus       269 rVtY~v~~eP~~gg~LP~~Lver-~vre~l~~~L~ALR~rAEr~~~  313 (554)
                      +|+|..+++|   +.+|.++.+. .+-..+..++.++++.+++...
T Consensus       207 ~VtY~~q~dp---G~lP~~~~n~~g~s~~~~~t~~~~~~fl~~~~~  249 (258)
T 3fo5_A          207 KVSYYNQATP---GVLNYVTTNVAGLSSEFYTTFKACEQFLLDNRN  249 (258)
T ss_dssp             EEEEEESCCG---GGHHHHHHHHHTSCCHHHHHHHHHHHHHHHTC-
T ss_pred             EEEEEEeeCC---CCCCceEEeccccchHHHHHHHHHHHHHHhccc
Confidence            9999999997   4589988776 3445667888899999887643

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}

Probab=99.00  E-value=1.1e-08  Score=99.86  Aligned_cols=148  Identities=12%  Similarity=0.126  Sum_probs=98.8

Q ss_pred             ccCCceE--EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC---CEEEEEEEeccceeEEEEEEEEEEEE
Q 008769          160 ENGGVHR--CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN---NKVRILQEGCKGLLYMVLHARVVMDI  234 (554)
Q Consensus       160 e~~g~~r--~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g---~~vrv~q~g~~gil~~~~~~rvvLdv  234 (554)
                      .|..+..  ......+|+||+++||+++.||.+++.|.|.++++++++.++   +.++.+... .+.-.-....+  |+.
T Consensus        46 ~h~~~~~~c~~~v~~~I~ApadkVW~lv~Df~~l~~w~p~V~s~e~~eGd~g~vGsVR~lt~~-~G~p~~~vkEr--L~~  122 (208)
T 3jrs_A           46 TYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVI-SGLPANTSRER--LDL  122 (208)
T ss_dssp             CCCCCTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEECCTTCCCSTTCEEEEEEC-TTSSCCEEEEE--EEE
T ss_pred             ccCCCCCeEeEEEEEEEeCCHHHHHHHHhCcCChhHccccceEEEEecCCCCCCCeEEEEEec-CCCccceEEEE--EEE
Confidence            3544433  344455899999999999999999999999999999885532   234444321 22100112222  344


Q ss_pred             eecCCCeEEEEEEecC--CceeEEEEEEEEcC-CCeEEEEEEEEEE-----eccCccchHHHHHHHHHhhHHHHHHHHHH
Q 008769          235 CEQHEQEISFEQVEGD--FDSFQGKWLFEQLG-SHHTLLKYSVESK-----MQKNSLLSEAIMEEVIYEDLPSNLCAIRD  306 (554)
Q Consensus       235 ~E~~~rrIsf~~veGd--fr~f~G~W~Leplg-dG~TrVtY~v~~e-----P~~gg~LP~~Lver~vre~l~~~L~ALR~  306 (554)
                      .+...+.+.|++++|+  ++.+.++.+|.|.+ +++|.|+|...|+     |.. + ....-+..++..-+...|++|++
T Consensus       123 lDde~~~~sYsIieG~lpv~~Y~sti~V~p~~~g~~t~V~Wt~~fes~~~D~p~-g-~~~e~a~~~~~~vy~~gL~~L~~  200 (208)
T 3jrs_A          123 LDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPE-G-NSEEDTRLFADTVIRLNLQKLAS  200 (208)
T ss_dssp             EETTTTEEEEEEEESSSSCTTCEEEEEEEEEEC-----CEEEEEEEEEEEECCT-T-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeccCCEEEEEEeeCCcceeeEEEEEEEEEccCCCccEEEEEEEEEEccCCCCC-C-CCHHHHHHHHHHHHHHHHHHHHH
Confidence            4556789999999996  45899999999963 4589999999887     211 2 22333466666677889999999


Q ss_pred             HHHhhh
Q 008769          307 YVEKRE  312 (554)
Q Consensus       307 rAEr~~  312 (554)
                      .+|+..
T Consensus       201 ~~e~~~  206 (208)
T 3jrs_A          201 ITEAMN  206 (208)
T ss_dssp             HHHHTC
T ss_pred             HHHhhc
Confidence            999864

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2

Probab=98.98  E-value=6.6e-09  Score=102.31  Aligned_cols=170  Identities=13%  Similarity=0.083  Sum_probs=115.5

Q ss_pred             cCCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHH-HHHhCcCcccccCcCCcEEEEEEe
Q 008769          128 LNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVW-NVMTAYETLPEIVPNLAISKILSR  206 (554)
Q Consensus       128 ~~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VW-aVLTDyE~yPewiP~V~sSrVL~r  206 (554)
                      ..++|++.++.+||       +||.+..+    .+...+.++++.+|++++++|+ .+|.|   .++|.+.|.++++++.
T Consensus        48 ~~~gW~~~~~~~gi-------~V~~k~~~----~~~~~~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~~~~~vle~  113 (237)
T 2pso_A           48 KFKGWVTCSSTDNT-------DLAFKKVG----DGNPLKLWKASVEVEAPPSVVLNRVLRE---RHLWDEDFVQWKVVET  113 (237)
T ss_dssp             HCCSCEEECCSSSC-------EEEEECCC----SSCCCCEEEEEEEESSCHHHHHHHHHHC---GGGTCTTBCCCEEEEE
T ss_pred             CCCCCEEEecCCCe-------EEEEEEcC----CCCCcEEEEEEEEEcCChHHHHHHHHhh---hhhHHhhhceEEEEEE
Confidence            34589999999999       99999431    1334678899999999998875 68888   7999999999999987


Q ss_pred             -cCCEEEEEEE-ecc-ceeEEEEEEEEEEEEeecCCC-eEEEEEEe-------cCCc--eeEEEEEEEEcCCCeEEEEEE
Q 008769          207 -ENNKVRILQE-GCK-GLLYMVLHARVVMDICEQHEQ-EISFEQVE-------GDFD--SFQGKWLFEQLGSHHTLLKYS  273 (554)
Q Consensus       207 -~g~~vrv~q~-g~~-gil~~~~~~rvvLdv~E~~~r-rIsf~~ve-------Gdfr--~f~G~W~LeplgdG~TrVtY~  273 (554)
                       +++...++.. ... .+...-|............+. .|....++       |.++  .+.+.|.++|.++++|.|+|.
T Consensus       114 id~~~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~~~~t~vt~~  193 (237)
T 2pso_A          114 LDRQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHI  193 (237)
T ss_dssp             EETTEEEEEEEECCSSSCCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEE
T ss_pred             cCCCcEEEEEEecCCCCcCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCCCCcEEEEEeccEEEEEECCCCCEEEEEE
Confidence             3343333332 111 010011111000000001111 23333332       2233  668999999998889999999


Q ss_pred             EEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 008769          274 VESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD  314 (554)
Q Consensus       274 v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~~  314 (554)
                      .+++|+  |++|.++ +..+...+...+.+||+.+++...+
T Consensus       194 ~~~Dp~--G~iP~~l-n~~~~~~~~~~l~~LR~~~~~~~~~  231 (237)
T 2pso_A          194 CRIDLK--GHSPEWY-SKGFGHLCAAEVARIRNSFQPLIAE  231 (237)
T ss_dssp             EEECCS--SSCTTTT-TTHHHHHHHHHHHHHHHTTSCC---
T ss_pred             EEeCCC--CCchHHH-HHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999995  6899999 9999999999999999998775443

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=98.95  E-value=3.2e-08  Score=92.30  Aligned_cols=141  Identities=11%  Similarity=0.162  Sum_probs=98.5

Q ss_pred             EEEEEEEEEcCCHHHHHHHH-hCcCc-ccccCcC-CcEEEEEEecCC--EEEEEEEeccceeEEEEEEEEEEEEeecCCC
Q 008769          166 RCVVASITVKAPVSEVWNVM-TAYET-LPEIVPN-LAISKILSRENN--KVRILQEGCKGLLYMVLHARVVMDICEQHEQ  240 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVL-TDyE~-yPewiP~-V~sSrVL~r~g~--~vrv~q~g~~gil~~~~~~rvvLdv~E~~~r  240 (554)
                      ..+..++.|+|||+.||+++ .|+.+ .|.|+|. ++++++++.+++  .++.+.....+-. -....+  ++..+..++
T Consensus         3 ~~~~~ei~i~a~a~kvw~~~~~d~~~l~pk~~P~~i~s~e~~eGdgg~Gsir~~~~~~g~~~-~~~kEr--l~~iD~~~~   79 (159)
T 4a8u_A            3 FNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPF-KYVKDR--VDEVDHTNF   79 (159)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSC-SEEEEE--EEEEETTTT
T ss_pred             EEEEEEEEecCCHHHHHHHHhcCccccchhhCchhccEEEEEcCCCCCceEEEEEEecCCCc-cEEEEE--EEEEccccC
Confidence            34788999999999999999 99999 6999996 688898877543  4555543222211 112222  344456678


Q ss_pred             eEEEEEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          241 EISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       241 rIsf~~veGd-----fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      .+.|++++|+     +..+..++++.|.++|+|.+++...|++.++..+++--+ +...+.+..+++++.+.+-+
T Consensus        80 ~~~y~iiegd~l~~~~~~y~~ti~v~p~~~ggs~v~wt~~y~~~~~~~~~~~~~-k~~~~~~~~~~k~ie~yll~  153 (159)
T 4a8u_A           80 KYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQI-KASKEMGETLLRAVESYLLA  153 (159)
T ss_dssp             EEEEEEEEETTCBTTEEEEEEEEEEEECTTSCEEEEEEEEEEESSSCCC-CHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeeCCCCccceEEEEEEEEEEECCCCceEEEEEEEEEECCCCcCCHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence            9999999987     358899999999888899999999999875432332111 22344455667777666544

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*

Probab=98.93  E-value=1.2e-08  Score=99.78  Aligned_cols=141  Identities=11%  Similarity=0.138  Sum_probs=97.7

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC---CEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEE
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN---NKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS  243 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g---~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIs  243 (554)
                      ......+|+||+++||+++.||.+++.|.|.+++|++....+   +.++.+.. ..+.-.-....  +|+..+...+.+.
T Consensus        51 ~~~v~~~I~ApadkVW~lv~dF~~l~~w~p~V~s~e~~eGd~g~vGsVR~lt~-~~G~p~~~vkE--rL~~lDd~~~~~s  127 (211)
T 3k3k_A           51 SSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIV-ISGLPANTSTE--RLDILDDERRVTG  127 (211)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCTTCGGGTCSSEEEEECCTTCCCCTTCEEEEEE-SSSSSCEEEEE--EEEEEETTTTEEE
T ss_pred             eEEEEEEEcCCHHHHHHHHhCcCChhHcCccceEEEEecCCCCCCCcEEEEEe-cCCCccceEEE--EEEEEeccCCEEE
Confidence            344555899999999999999999999999999999986543   33454433 22311011222  2444455678999


Q ss_pred             EEEEecC--CceeEEEEEEEEcCCCeEEEEEEEEEEe-----ccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 008769          244 FEQVEGD--FDSFQGKWLFEQLGSHHTLLKYSVESKM-----QKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD  314 (554)
Q Consensus       244 f~~veGd--fr~f~G~W~LeplgdG~TrVtY~v~~eP-----~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~~  314 (554)
                      |++++|+  ++.|.++++|.|.++|+  |+|...|+.     . .+.- +.-+..++..-+...|++|++.+|+....
T Consensus       128 YsIieg~lpv~~Y~sti~V~p~~~gg--V~Wt~~fes~~~D~P-~g~~-~e~a~~~v~~iy~~gL~~L~~~~e~~~~~  201 (211)
T 3k3k_A          128 FSIIGGEHRLTNYKSVTTVHRFEKEN--RIWTVVLESYVVDMP-EGNS-EDDTRMFADTVVKLNLQKLATVAEAMARN  201 (211)
T ss_dssp             EEEEEETTGGGTCEEEEEEEEEEETT--EEEEEEEEEEEEECC-SSSS-SSCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEeecCcceeEEEEEEEEEECCCCC--EEEEEEEEEecCCCC-CCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999986  45899999999987765  889888872     1 1111 11224455556678999999999988665

>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5

Probab=98.85  E-value=1e-07  Score=88.70  Aligned_cols=144  Identities=13%  Similarity=0.094  Sum_probs=93.2

Q ss_pred             CceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCC----cEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecC
Q 008769          163 GVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH  238 (554)
Q Consensus       163 g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V----~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~  238 (554)
                      .+...+..++.|+||+++||++|+|.+++++|++.-    ..+.+-.+.|+..++...+..+.. +.+..++ +++  .+
T Consensus        19 ~~~~~i~~~r~i~Ap~e~Vw~altdpe~~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~~~v-~e~--~p   94 (178)
T 1xuv_A           19 PGKQEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNE-YAFHGVN-HDV--TE   94 (178)
T ss_dssp             TTCSEEEEEEEESSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCE-EEEEEEE-EEE--ET
T ss_pred             CCCcEEEEEEEECCCHHHHHHHhCCHHHHHhCCCCCCccceEEEEecccCCEEEEEEECCCCCE-EEEEEEE-EEE--eC
Confidence            345568889999999999999999999999998642    222333345665554444333321 2233332 232  47


Q ss_pred             CCeEEEEEEecC----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 008769          239 EQEISFEQVEGD----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  313 (554)
Q Consensus       239 ~rrIsf~~veGd----fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~  313 (554)
                      +++|.|+...++    ......+|+|++.++++|+|++...+.+.   ......+...+..+....|..|++.+|...+
T Consensus        95 ~~rl~~~~~~~~~~~~~~~~~v~~~l~~~~~ggT~lt~~~~~~~~---~~~~~~~~~~~~~Gw~~~L~~Lk~~le~~~~  170 (178)
T 1xuv_A           95 PERIISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSVFQTI---EDRDGMLQSGMEEGINDSYERLDELLEKMKK  170 (178)
T ss_dssp             TTEEEEEEEETTSSSSCCCEEEEEEEEEETTTEEEEEEEEECSSH---HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEecCCCCCCCcEEEEEEEEEcCCCCEEEEEEEEeCCH---HHHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence            899999876422    12467888999987568999998875321   0111122223467888999999999987643

>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5

Probab=98.82  E-value=3e-07  Score=84.18  Aligned_cols=145  Identities=12%  Similarity=0.031  Sum_probs=93.9

Q ss_pred             CceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcC----CcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecC
Q 008769          163 GVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH  238 (554)
Q Consensus       163 g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~----V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~  238 (554)
                      .....+..++.|+||++.||++|+|.+++++|++.    +..+.+-.+.|+..++...+..+.. +.+..++ +++  .+
T Consensus        11 ~~~~~i~~~~~i~ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~~~v-~e~--~p   86 (171)
T 2il5_A           11 NEHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKV-NVIEGIY-ESL--VM   86 (171)
T ss_dssp             CEEEEEEEEEEESSCHHHHHHHTTCHHHHTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCE-EEEEEEE-EEE--ET
T ss_pred             CCCceEEEEEEeCCCHHHHHHHHCCHHHHHhccCCCCccceEEEecccCCCEEEEEEECCCCCE-EEEEEEE-EEE--cC
Confidence            45677999999999999999999999999999854    2233333345665555444333321 2233332 232  47


Q ss_pred             CCeEEEEEEecCC--ceeEEEEEEEEcCCCeEEEEEEEEEEeccC--ccchH-----HHHHHHHHhhHHHHHHHHHHHHH
Q 008769          239 EQEISFEQVEGDF--DSFQGKWLFEQLGSHHTLLKYSVESKMQKN--SLLSE-----AIMEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       239 ~rrIsf~~veGdf--r~f~G~W~LeplgdG~TrVtY~v~~eP~~g--g~LP~-----~Lver~vre~l~~~L~ALR~rAE  309 (554)
                      +++|.|+...++.  .....+|+|++.++|+|+|++....-+..+  .....     ......+..+...+|..|++.+|
T Consensus        87 ~~rl~~~~~~~~~~~~~~~~~~~l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~L~~L~~~le  166 (171)
T 2il5_A           87 DEYVKMTIGMPGLSETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIE  166 (171)
T ss_dssp             TTEEEEEESCC--CCCCEEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEecCCCCCcEEEEEEEEECCCCCEEEEEEEEeccCcccccccchhccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            8999998764322  246788999998775799999875433100  00111     12234567788899999999988


Q ss_pred             hh
Q 008769          310 KR  311 (554)
Q Consensus       310 r~  311 (554)
                      ..
T Consensus       167 ~~  168 (171)
T 2il5_A          167 TS  168 (171)
T ss_dssp             TT
T ss_pred             hc
Confidence            64

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*

Probab=98.81  E-value=2.7e-08  Score=96.50  Aligned_cols=150  Identities=13%  Similarity=0.241  Sum_probs=102.5

Q ss_pred             eccccccCCc-eEEEEEEEEEcCCHHHHHHHH-h-CcCcc-cccCcCC-cEEEEEEecCC--EEEEEEEeccceeEEEEE
Q 008769          155 FDGLLENGGV-HRCVVASITVKAPVSEVWNVM-T-AYETL-PEIVPNL-AISKILSRENN--KVRILQEGCKGLLYMVLH  227 (554)
Q Consensus       155 ~d~~~e~~g~-~r~V~asI~I~APpe~VWaVL-T-DyE~y-PewiP~V-~sSrVL~r~g~--~vrv~q~g~~gil~~~~~  227 (554)
                      .|+++.+.-. ...+..++.|+|||+.||+++ . |+.++ |.|+|.+ ++++++ .+|+  .++.+.-. .+.-.-...
T Consensus        17 ~~~~~~~~~~~~g~~~~eveI~apa~kvW~~~v~~df~~l~pk~~P~~i~s~e~~-GdGg~GsIR~lt~~-~G~~~~~vk   94 (201)
T 2vq5_A           17 HQGIINQVSTVTKVIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII-GDGGVGTILDMTFV-PGEFPHEYK   94 (201)
T ss_dssp             --CTTGGGCCEEEEEEEEEEESSCHHHHHHHHTCGGGGGGHHHHSTTSCSEEEEE-SSSSTTCEEEEECC-TTCSSCEEE
T ss_pred             hhhhhhCccccceEEEEEEEecCCHHHHHhhhhcCCcccchhhhCcccceEEEEe-cCCCCCeEEEEEec-CCCcccEEE
Confidence            3555666444 557899999999999999995 6 99998 9999975 777988 6542  34444322 221001222


Q ss_pred             EEEEEEEeecCCCeEEEEEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCc-cchHHHHHHHHHhhHHHHH
Q 008769          228 ARVVMDICEQHEQEISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNS-LLSEAIMEEVIYEDLPSNL  301 (554)
Q Consensus       228 ~rvvLdv~E~~~rrIsf~~veGd-----fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg-~LP~~Lver~vre~l~~~L  301 (554)
                      .+  ++..++..+.+.|++++|+     ++.+..+.+|.+.++|+|.+++...|++..+. ..|+..   ...+.+..++
T Consensus        95 Er--le~iDde~~~~sYsiieGd~l~~~~~~y~~tikv~p~~dggs~vkWt~~ye~~~~~~~~~e~~---~~~~~~~~~~  169 (201)
T 2vq5_A           95 EK--FILVDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKSSTEYHVKPEFVKIVEPL---ITTGPLAAMA  169 (201)
T ss_dssp             EE--EEEEETTTTEEEEEEEEEGGGGTTEEEEEEEEEEEEEETTEEEEEEEEEEEECGGGHHHHTTT---CCSHHHHHHH
T ss_pred             EE--EEEEchhhCEEEEEEEecCccccceeEEEEEEEEEECCCCCeEEEEEEEEEECCCCCCCChhH---HHHHHHHHHH
Confidence            33  3445567889999999986     44888888999988889999999999986432 122222   3345566777


Q ss_pred             HHHHHHHHhh
Q 008769          302 CAIRDYVEKR  311 (554)
Q Consensus       302 ~ALR~rAEr~  311 (554)
                      ++|.+++.+.
T Consensus       170 KaiE~yLlan  179 (201)
T 2vq5_A          170 DAISKLVLEH  179 (201)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHHHHhC
Confidence            7777776554

>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}

Probab=98.79  E-value=3.3e-07  Score=80.30  Aligned_cols=133  Identities=11%  Similarity=0.162  Sum_probs=88.1

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEE
Q 008769          165 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  244 (554)
Q Consensus       165 ~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf  244 (554)
                      ...++.++.|+||+++||++|+|.+++++|++.. .+..--+.|+..++... ..+. .+.+..++ +++  .++++|.|
T Consensus         4 ~~~i~~~~~i~ap~e~Vw~~ltd~~~~~~W~~~~-~~~~~~~~G~~~~~~~~-~~g~-~~~~~~~v-~~~--~p~~~l~~   77 (146)
T 2leq_A            4 KLIAQVKTVINAPIEKVWEALVNPEIIKEYMFGT-TVVSDWKEGSQIVWKGE-WKGK-AYEDKGTI-LQF--NERSILQY   77 (146)
T ss_dssp             CEEEEEEEEECSCHHHHHHHHSCTTHHHHHSSSC-EEECCCSTTCEEEEEEE-ETTE-EEEEEEEE-EEE--ETTTEEEE
T ss_pred             CceEEEEEEECCCHHHHHHHHcCHHHhceeEcCC-cceeccCCCCEEEEEec-CCCc-eecccEEE-EEE--cCCCEEEE
Confidence            3568999999999999999999999999997422 22222245555444322 1221 12333332 222  47889998


Q ss_pred             EEEec--C-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          245 EQVEG--D-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       245 ~~veG--d-----fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      +...+  .     .......|+|++.++ +|+|++....-+      +. .....+..+....|..|++.+|..
T Consensus        78 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~~------~~-~~~~~~~~gw~~~l~~Lk~~le~~  143 (146)
T 2leq_A           78 SHFSPLTGKPDLPENYHVVTITLTALKK-GVEVELTQDNNE------TE-KEQKHSEDNWNTMLEGLKKFLENK  143 (146)
T ss_dssp             ECBCGGGCCCSCGGGSCEEEEEEEECSS-CEEEEEEEEEES------SH-HHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             EEccCccCCCCCCCCceEEEEEEEEcCC-CeEEEEEEecCC------ch-hhHhhHHhhHHHHHHHHHHHHhcc
Confidence            86532  0     114678899999865 699999876433      11 345667788899999999999864

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A*

Probab=98.76  E-value=2.5e-07  Score=89.04  Aligned_cols=142  Identities=11%  Similarity=0.171  Sum_probs=101.0

Q ss_pred             CceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEE-ecC------CEEEEEEEeccceeEE-EEEEEEEEEE
Q 008769          163 GVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILS-REN------NKVRILQEGCKGLLYM-VLHARVVMDI  234 (554)
Q Consensus       163 g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~-r~g------~~vrv~q~g~~gil~~-~~~~rvvLdv  234 (554)
                      .++=.-....+|+||++.||+++.||.+.+.|.|.++++++.. .++      +.+|.... ..+. +. ..+.  .|+.
T Consensus        27 ~~~c~s~~~~~I~Ap~d~VWalVrdF~~p~~w~p~V~s~~~~e~Gdg~~~~~vGsVR~ltl-~~G~-P~~~i~E--rL~~  102 (189)
T 3oji_A           27 PNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKVGTIREVSV-VSGL-PASTSVE--ILEV  102 (189)
T ss_dssp             -CEEEEEEEEEESSCHHHHHHHHSCTTCGGGTCTTEEEEEECCC----CCCSTTCEEEEEE-CSSS-SBSEEEE--EEEE
T ss_pred             CCccceeEEEEEcCCHHHHHHHHhCCCChhhCccccceEEEEecCCCCccCCCCcEEEEEe-cCCC-cCceEEE--EEEE
Confidence            3344456778899999999999999999999999999999985 433      33444332 1221 11 1222  3555


Q ss_pred             eecCCCeEEEEEEecCC--ceeEEEEEEEEcC---CC-----eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHH
Q 008769          235 CEQHEQEISFEQVEGDF--DSFQGKWLFEQLG---SH-----HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAI  304 (554)
Q Consensus       235 ~E~~~rrIsf~~veGdf--r~f~G~W~Leplg---dG-----~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~AL  304 (554)
                      .++..+.+.|++++|++  ..+...-++.+..   +|     .|.+.+...++|.. + .-.-.+..++..-+...|++|
T Consensus       103 lDde~~~~sY~Iieg~~pv~nY~StitV~~~~~~~~G~~~~~~T~v~es~~~D~P~-g-~t~e~~~~~v~~v~~~gL~~L  180 (189)
T 3oji_A          103 LDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQ-G-NTEEDTRMFVDTVVKSNLQNL  180 (189)
T ss_dssp             EETTTTEEEEEEEECSBSSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCT-T-SCHHHHHHHHHHHHHHHHHHH
T ss_pred             EeccCCEEEEEEEecCCccccEEEEEEEEeccccCCCccccCcEEEEEeEecCCCC-C-CCHHHHHHHHHHHHHHHHHHH
Confidence            66778999999999974  5888888998853   23     68888888888642 2 234456677777888899999


Q ss_pred             HHHHHh
Q 008769          305 RDYVEK  310 (554)
Q Consensus       305 R~rAEr  310 (554)
                      ++.+|+
T Consensus       181 ~~~~e~  186 (189)
T 3oji_A          181 AVISTA  186 (189)
T ss_dssp             HHHHHC
T ss_pred             HHHhhc
Confidence            999986

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0

Probab=98.75  E-value=2.2e-07  Score=87.40  Aligned_cols=143  Identities=10%  Similarity=0.072  Sum_probs=98.6

Q ss_pred             CceEEEEEEEEEcCCHHHHHHH-HhCcCcc-cccCcC-CcEEEEEEecCC--EEEEEEEeccceeEEEEEEEEEEEEeec
Q 008769          163 GVHRCVVASITVKAPVSEVWNV-MTAYETL-PEIVPN-LAISKILSRENN--KVRILQEGCKGLLYMVLHARVVMDICEQ  237 (554)
Q Consensus       163 g~~r~V~asI~I~APpe~VWaV-LTDyE~y-PewiP~-V~sSrVL~r~g~--~vrv~q~g~~gil~~~~~~rvvLdv~E~  237 (554)
                      .+...+..+++|+|||+.||++ +.|+.++ |.|+|. ++++++++.+++  .++.+.-.-.+-. -....+  ++..+.
T Consensus         7 Mg~~~~~~ev~i~a~a~kvw~~~v~d~~~l~pk~~P~~v~s~e~~eGdg~~Gsir~~~~~~g~~~-~~~kEr--l~~iD~   83 (165)
T 3ie5_A            7 MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDGHPL-TYMLHK--FDEIDA   83 (165)
T ss_dssp             CSCEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECTTSSC-CEEEEE--EEEEEG
T ss_pred             eeeEEEEEEEEecCCHHHHHHHhcCCccccchhhCCcccceEEEecCCCCCCeEEEEEecCCCCC-ceEEEE--EEEEch
Confidence            3456789999999999999999 5899999 999996 777788876542  4555443222211 112223  344556


Q ss_pred             CCCeEEEEEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          238 HEQEISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       238 ~~rrIsf~~veGd-----fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      ..+.+.|++++|+     ++.+..+.++. .++|+|.+++...|++.++..+++--+ +...+.+..+++++.+.+-+
T Consensus        84 ~~~~~~Y~iieG~~l~~~~~~y~~~i~v~-~~~ggs~vkwt~~y~~~~~~~~~~e~~-k~~~~~~~~~~K~ie~ylla  159 (165)
T 3ie5_A           84 ANFYCKYTLFEGDVLRDNIEKVVYEVKLE-AVGGGSKGKITVTYHPKPGCTVNEEEV-KIGEKKAYEFYKQVEEYLAA  159 (165)
T ss_dssp             GGTEEEEEEEEEGGGTTTEEEEEEEEEEE-EETTEEEEEEEEEEEECTTCCCCHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCEEEEEEecCCCCccceEEEEEEEEEE-eCCCceEEEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            7889999999987     45888888888 567789999999999875433333221 22344555667777666544

>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5

Probab=98.74  E-value=1.2e-07  Score=83.62  Aligned_cols=133  Identities=14%  Similarity=0.119  Sum_probs=87.7

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCc----EEEEEEecCCEEEEEEE-eccceeEEEEEEEEEEEEeecCCC
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLA----ISKILSRENNKVRILQE-GCKGLLYMVLHARVVMDICEQHEQ  240 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~----sSrVL~r~g~~vrv~q~-g~~gil~~~~~~rvvLdv~E~~~r  240 (554)
                      ..++.++.|+||+++||++|+|.+++++|++.-.    .+.+-.+.|+....... +..+.. ..+..++ +++  .+++
T Consensus         3 ~~~~~~~~i~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~g~~-~~~~~~v-~~~--~p~~   78 (147)
T 1z94_A            3 NTIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQK-HAFGGRY-LEL--VPGE   78 (147)
T ss_dssp             CCEEEEEEESSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCE-EEEEEEE-EEE--ETTT
T ss_pred             cEEEEEEEeCCCHHHHHHHhCCHHHHhhccCCCCEeeeEEEEccCCCcEEEEEEEECCCCCE-EEEEEEE-EEE--cCCC
Confidence            3478888999999999999999999999997521    12222335555544333 122211 2333332 222  4789


Q ss_pred             eEEEEEEec--CCc-eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          241 EISFEQVEG--DFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       241 rIsf~~veG--dfr-~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      +|.|+...+  ++. ....+|+|++.++ +|+|++.....+.  .     .....+..+....|..|++.+|+
T Consensus        79 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~~~--~-----~~~~~~~~gw~~~L~~L~~~le~  143 (147)
T 1z94_A           79 RIRYTDRFDDAGLPGDMITTITLAPLSC-GADLSIVQEGIPD--A-----IPPENCYLGWQQSLKQLAALVEP  143 (147)
T ss_dssp             EEEEEEEESCCC---CEEEEEEEEEETT-EEEEEEEEECCCT--T-----SCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             EEEEEEEEeCCCCCCcEEEEEEEEecCC-CEEEEEEEEcCCc--h-----hhHHHHHHHHHHHHHHHHHHHHh
Confidence            999987653  222 4678899999875 7999998876432  1     12245567888899999999875

>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}

Probab=98.66  E-value=7.1e-07  Score=79.55  Aligned_cols=130  Identities=16%  Similarity=0.168  Sum_probs=86.2

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCccccc-CcC--C--cEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEI-VPN--L--AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  241 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPew-iP~--V--~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr  241 (554)
                      .+..++.|+||+++||++|+|.+++++| ++.  +  ..+.+-.+.|+..++...+..+-....+..++ +++  .++++
T Consensus         2 ~i~~~~~i~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~~~~v-~~~--~p~~~   78 (142)
T 2lcg_A            2 NITVETTVAAPVGKVWRAYTTPEDIKQWNAASDDWHTTAATVDLREGGAFSSRMEAKDGSMGFDFAGTY-TKV--VENKR   78 (142)
T ss_dssp             EEEEEEEESSCHHHHHHHTTCHHHHHHHCCSSTTEEEEEEEECCSTTCEEEEEEEETTSSCEEEEEEEE-EEE--ETTTE
T ss_pred             eEEEEEEeCCCHHHHHHHhCCHHHHhcCCCCCCCccceeeEEccccCCEEEEEEEcCCCCceeeeEEEE-EEE--cCCCE
Confidence            4788999999999999999999999999 653  1  12233234556555444332221112333332 222  47899


Q ss_pred             EEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 008769          242 ISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  313 (554)
Q Consensus       242 Isf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~  313 (554)
                      |.|+. .|    ....|+|++.++ +|+|++......  . ..     ...+..+....|..|++.++....
T Consensus        79 l~~~~-~g----~~~~~~l~~~~~-gT~l~~~~~~~~--~-~~-----~~~~~~Gw~~~L~~L~~~le~~~~  136 (142)
T 2lcg_A           79 IEYAF-GD----RTAKVEFLEAPQ-GVTVRVSFVAET--E-YP-----VEQQQQGWQAILNNFKRHVESHLE  136 (142)
T ss_dssp             EEEEE-TT----EEEEEEEEEETT-EEEEEEEEECCS--S-SC-----HHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             EEEEc-CC----CEEEEEEEEcCC-CEEEEEEEecCC--H-HH-----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99986 23    678899999875 799999866521  1 11     134567888899999999887543

>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens}

Probab=98.65  E-value=9.4e-07  Score=81.26  Aligned_cols=142  Identities=12%  Similarity=0.064  Sum_probs=92.4

Q ss_pred             ceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCC----cEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCC
Q 008769          164 VHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHE  239 (554)
Q Consensus       164 ~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V----~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~  239 (554)
                      ....+..++.|+||+++||++++|.+.+++|++.-    ..+++-.+.|+..++...+.++.. ..+..+ ++++  .++
T Consensus        10 ~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~-~~~~~~-v~e~--~p~   85 (172)
T 2ldk_A           10 EALSFSIVAEFDADVKRVWAIWEDPRQLERWWGPPTWPATFETHEFTVGGKAAYYMTGPDGTK-ARGWWQ-FTTI--EAP   85 (172)
T ss_dssp             TTTEEEEEEEESSCHHHHHHHHHCHHHHHTTSSCTTSCEEEEEECCSTTCEEEEEEECTTSCE-EEEEEE-EEEE--CSS
T ss_pred             CCceEEEEEEeCCCHHHHHHHhCCHHHHHhccCCCCcccceEEEeecCCCEEEEEEECCCCCE-EeeEEE-EEEE--cCC
Confidence            35678999999999999999999999999997631    223333345665555444333321 122222 2232  478


Q ss_pred             CeEEEEEEecC--------CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          240 QEISFEQVEGD--------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       240 rrIsf~~veGd--------fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      ++|.|+...++        +.....+|+|++.++ +|+|++...+.+.   ..-..++...+..+....|..|++.+|..
T Consensus        86 ~rl~~~~~~~~~~g~p~~~~~~~~v~~~l~~~~~-gT~lt~~~~~~~~---~~~~~~~~~~~~~Gw~~~L~~L~~~le~~  161 (172)
T 2ldk_A           86 DHLEFDDGFADEHGAPVDELGVTHATVKLEPLEN-RTRMTIISTFESE---EQMQKMAEMGMEEGMREAIEQIDAVLSEP  161 (172)
T ss_dssp             SEEEEEEEEBCSSCCBCTTTCEEEEEEEEEEETT-EEEEEEEEEESCH---HHHHHHHHHTHHHHHHHHHHHHHHHHTCC
T ss_pred             CEEEEEEeecCCCCCccCCCccEEEEEEEEEcCC-CEEEEEEEEcCCH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            89999875422        124677889999864 7999998876321   01112223345788899999999998764


Q ss_pred             hC
Q 008769          312 EG  313 (554)
Q Consensus       312 ~~  313 (554)
                      ..
T Consensus       162 ~~  163 (172)
T 2ldk_A          162 AN  163 (172)
T ss_dssp             SS
T ss_pred             HH
Confidence            33

>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5

Probab=98.64  E-value=4.6e-07  Score=83.97  Aligned_cols=142  Identities=10%  Similarity=0.070  Sum_probs=89.9

Q ss_pred             CceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcC--C--cEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecC
Q 008769          163 GVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPN--L--AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH  238 (554)
Q Consensus       163 g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~--V--~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~  238 (554)
                      .....+..++.|+||+++||++|+|.+++++|++.  +  ..+.+-.+.|+.......+..+.. +.+..++ +++  .+
T Consensus         7 ~~~~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~~~v-~e~--~p   82 (178)
T 1xfs_A            7 DAELDLMLKRELAVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVDLRPGGEFYTVMQDPEGNK-FPNSGCF-LEV--TD   82 (178)
T ss_dssp             CTTTEEEEEEEESSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEECCSTTCEEEEEEECTTCCE-EEEEEEE-EEE--ET
T ss_pred             CCCceEEEEEEecCCHHHHHHHhCCHHHHhhCCCCCCeeeeEEEEeeECCcEEEEEEECCCCCE-EEEEEEE-EEE--eC
Confidence            34456888899999999999999999999999764  2  123333345666555444323321 2233322 232  47


Q ss_pred             CCeEEEEEEec----CCc------------eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHH
Q 008769          239 EQEISFEQVEG----DFD------------SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLC  302 (554)
Q Consensus       239 ~rrIsf~~veG----dfr------------~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~  302 (554)
                      +++|.|+..-+    +..            ....+|+|++.++ +|+|++...+.+   .......+...+..+....|.
T Consensus        83 ~~rl~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~~---~~~~~~~~~~~~~~Gw~~~l~  158 (178)
T 1xfs_A           83 EKRLIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTSS-GTRYTACAMHNT---PGQRKLHEEMGFHEGWGTTIT  158 (178)
T ss_dssp             TTEEEEESSEEGGGEECCC-----------CCEEEEEEEECSS-SEEEEEEEECSS---HHHHHHHHTTTHHHHHHHHHH
T ss_pred             CCEEEEEEEEcCCCCccccccccccccccccEEEEEEEEECCC-CEEEEEEEEcCC---HHHHHHHHhhhHHHHHHHHHH
Confidence            88998886421    111            3578899999875 699999887531   000111111124678889999


Q ss_pred             HHHHHHHhhh
Q 008769          303 AIRDYVEKRE  312 (554)
Q Consensus       303 ALR~rAEr~~  312 (554)
                      .|++.+|...
T Consensus       159 ~L~~~le~~~  168 (178)
T 1xfs_A          159 QLEELLKQEK  168 (178)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHhhh
Confidence            9999998763

>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}

Probab=98.64  E-value=1.4e-06  Score=78.30  Aligned_cols=129  Identities=9%  Similarity=0.064  Sum_probs=87.2

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCccccc-CcC----CcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEI-VPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  241 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPew-iP~----V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr  241 (554)
                      .+..++.|+||+++||++++|.+.+++| ++.    +..+++-.+.|+..+....+..+...+.+..++ +++  .++++
T Consensus         2 ~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~g~v-~e~--~p~~~   78 (144)
T 2lgh_A            2 KISIEAHIEQEIEAVWWAWNDPDCIARWNAASSDWHTTGSRVDLVVGGRFCHHMAAKDGSAGFDFTGTF-TRV--EAPTR   78 (144)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHHHHTTSSSCSTTEEEEEEEECCSTTCEEEEEEEETTSSCEEEEEEEE-EEE--ETTTE
T ss_pred             EEEEEEEeCCCHHHHHHHhCCHHHHhccCCCCCCcccceEEECCCCCCEEEEEEECCCCCceEEeEEEE-EEE--eCCCE
Confidence            3688999999999999999999999999 753    223333334666655554443332112333332 232  47899


Q ss_pred             EEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          242 ISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       242 Isf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      |.|+.. |   ....+|+|++.+ ++|+|++.... +. .  ..    ...+..+....|..|++.+|..
T Consensus        79 l~~~~~-~---~~~~~~~l~~~~-~gT~l~~~~~~-~~-~--~~----~~~~~~Gw~~~L~~L~~~le~~  135 (144)
T 2lgh_A           79 LSFVMD-D---GREVDVQFASEP-GGTWVQETFDA-ET-S--HT----PAQQQAGWQGILDNFKRYVEAA  135 (144)
T ss_dssp             EEEEET-T---CCEEEEEEEEET-TEEEEEEEEEC-CT-T--SC----HHHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEec-C---CcEEEEEEEEcC-CCEEEEEEEEC-CC-H--HH----HHHHHHHHHHHHHHHHHHHhhC
Confidence            999853 3   357889999986 47999988765 21 1  11    1235678888999999998874

>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii}

Probab=98.61  E-value=1.1e-06  Score=81.60  Aligned_cols=144  Identities=13%  Similarity=0.034  Sum_probs=93.8

Q ss_pred             CceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcC----CcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecC
Q 008769          163 GVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH  238 (554)
Q Consensus       163 g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~----V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~  238 (554)
                      .....+..++.|+||+++||++++|.+.+++|++.    +..+++--+.|+..++...+.++.. +.+..++ +++  .+
T Consensus        13 ~~~~~i~~~~~i~Ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~v-~e~--~p   88 (175)
T 2lf2_A           13 KENKTITIKREFAAVRAIVWEAFTRAEILDQWWAPKPWKAKTKSMDFKEGGTWLYAMVGPNGEE-HWSICEY-AII--KP   88 (175)
T ss_dssp             TTTTEEEEEEEESSCHHHHHHHHTCHHHHHHSSSSSSSEEEEEEECCSTTCEEEEEEECSSSCE-EEEEEEE-CCC--CS
T ss_pred             CCCceEEEEEEEcCCHHHHHHHhCCHHHHhhCcCCCCccceEEEEeccCCCEEEEEEECCCCCE-EEeEEEE-EEE--cC
Confidence            34567899999999999999999999999999753    1223333346666555544434422 2223322 222  47


Q ss_pred             CCeEEEEEEecC--------CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          239 EQEISFEQVEGD--------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       239 ~rrIsf~~veGd--------fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      +++|.|+..-++        +.....+|+|++.++ +|+|++...+.+.   -.-..++...+..+....|..|++.++.
T Consensus        89 ~~rl~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~~-gT~l~~~~~~~~~---~~~~~~~~~~~~~Gw~~~L~~L~~~le~  164 (175)
T 2lf2_A           89 IERFTGKDGFTDASGKLNTEMPRSNWDMRFIDKGE-ITEVQYHISYDDV---AQLEATIQMGFKEGITMAMENLDELLVS  164 (175)
T ss_dssp             SSEEEEEEEEESSTTCCCTTSCCEEEEEEEEEETT-EEEEEEEEECSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEecCCCCCcCCCCCcEEEEEEEEECCC-CEEEEEEEecCCH---HHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            789998865321        124678889999864 7999998765320   0112223334678899999999999987


Q ss_pred             hhCC
Q 008769          311 REGD  314 (554)
Q Consensus       311 ~~~~  314 (554)
                      ....
T Consensus       165 ~~~~  168 (175)
T 2lf2_A          165 GKKL  168 (175)
T ss_dssp             HHSC
T ss_pred             Cchh
Confidence            6543

>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}

Probab=98.60  E-value=1.7e-06  Score=79.64  Aligned_cols=142  Identities=11%  Similarity=0.081  Sum_probs=93.1

Q ss_pred             CCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCC----cEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeec
Q 008769          162 GGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQ  237 (554)
Q Consensus       162 ~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V----~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~  237 (554)
                      ..+...+..++.|+|||++||++++|.+.+++|++.-    ..+.+-.+.|+..++...+.++.. +.+..++ +++  .
T Consensus         9 ~~~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~v-~e~--~   84 (164)
T 3pu2_A            9 PGSATRLEFRRHFAATPEQLWAALTSPALLPAWLFARGWPMTECVFEPHKGGLIRQVWTGPEGRT-RGLTGRV-ILA--E   84 (164)
T ss_dssp             CCBTTEEEEEEEESSCHHHHHHHHHCTTTGGGTSCBTTBCEEEEEECCSTTCEEEEEEECGGGCE-EEEEEEE-EEE--E
T ss_pred             CCCCceEEEEEEECCCHHHHHHHhcCHHHHhhEeCCCCeeeEEEEEeccCCCEEEEEEECCCCCE-EEEEEEE-EEE--c
Confidence            3556678999999999999999999999999999741    223333345666655544434421 2333332 232  4


Q ss_pred             CCCeEEEEEEe-c--CCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          238 HEQEISFEQVE-G--DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       238 ~~rrIsf~~ve-G--dfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      ++++|.|+..- +  .-.....+|+|++.++ +|+|++...+..   .-.....+...+..+-...|..|++.++..
T Consensus        85 p~~rl~~t~~~~~~~~~~~s~vt~~l~~~~~-gT~l~l~~~~~~---~~~~~~~~~~~~~~GW~~~L~~L~~~l~~~  157 (164)
T 3pu2_A           85 PPHRLIHSELYDEDWTGGETLVTLQLLPVEG-GTELAMAVDYAT---PEARDAVAASAMATEMEEAYRHLDVMLAAL  157 (164)
T ss_dssp             TTTEEEEEEBCC---CCSCEEEEEEEEEETT-EEEEEEEEECSS---TTHHHHHHTSTHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEEEeccCCCCCCCEEEEEEEEEcCC-CEEEEEEEEeCC---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            78999988642 1  1123577889999875 699999887531   111222223456788888999999888765

>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}

Probab=98.59  E-value=1.1e-06  Score=78.95  Aligned_cols=130  Identities=12%  Similarity=0.144  Sum_probs=87.3

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCccccc-CcC----CcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEI-VPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  241 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPew-iP~----V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr  241 (554)
                      .+..++.|+||+++||++|+|.+.+++| ++.    +..+.+-.+.|+..++...+..+-..+.+...+ +++  .++++
T Consensus         3 ~i~~~~~i~Ap~e~Vw~altdpe~~~~W~~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~g~v-~e~--~p~~~   79 (144)
T 2l8o_A            3 KITVEVTVYAAIEKVWKYWNEPAHIMKWCQASPEWHVPAAQNDLKAGGTFTTTMAAKDGSMSFDFGGVY-DQV--KTNDL   79 (144)
T ss_dssp             SEEEEEEECSCHHHHHHHHHCHHHHHHHSTTCTTCEEEEEECCCSTTCEEEEEEECTTSSCEEEEEEEE-EEE--ETTTE
T ss_pred             EEEEEEEECCCHHHHHHHHCCHHHHhhccCCCCCcccceeEEccCCCCEEEEEEECCCCCceeeeeEEE-EEE--eCCCE
Confidence            3788999999999999999999999999 753    222333334666655554443332112333332 232  47899


Q ss_pred             EEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 008769          242 ISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  312 (554)
Q Consensus       242 Isf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~  312 (554)
                      |.|+.. |   ....+|+|++.+ ++|+|++.... +..  ..     ...+..+....|..|++.++...
T Consensus        80 l~~~~~-g---~~~v~~~l~~~~-~gT~l~~~~~~-~~~--~~-----~~~~~~Gw~~~L~~L~~~le~~~  137 (144)
T 2l8o_A           80 IEYTIG-D---GRKVRIVFTHTG-DTTNIVESFDP-EET--NP-----RELQQSGWQAILNSFKSYTENNL  137 (144)
T ss_dssp             EEEEET-T---CCEEEEEEEECS-SSEEEEEEECC-CSS--SC-----HHHHHHHHHHHHHHHHHHHGGGT
T ss_pred             EEEEeC-C---CeEEEEEEEEcC-CCEEEEEEEeC-CCH--HH-----HHHHHHHHHHHHHHHHHHHHhHh
Confidence            999853 3   357889999976 47999998765 311  11     23356788889999999988753

>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5

Probab=98.59  E-value=1.6e-07  Score=83.57  Aligned_cols=131  Identities=14%  Similarity=0.228  Sum_probs=86.6

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEE
Q 008769          165 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  244 (554)
Q Consensus       165 ~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf  244 (554)
                      +..++.++.|+||+++||++|+|.+++++|+|.+.   +-.+.|+...+.. . .+.    +..++ +++  .++++|.|
T Consensus         7 ~~~i~~~~~i~ap~e~Vw~~ltd~~~~~~W~~~~~---~~~~~G~~~~~~~-~-~g~----~~~~v-~e~--~p~~~l~~   74 (143)
T 1xn6_A            7 LNDIKQTIVFNASIQKVWSVVSTAEGIASWFMPND---FVLEVGHEFHVQS-P-FGP----SPCKV-LEI--DEPNHLSF   74 (143)
T ss_dssp             CCCEEEEEEESSCHHHHHHTTSCSHHHHTTSCCBC---CCCCTTCEECBCC-T-TCC----CCEEE-EEE--ETTTEEEE
T ss_pred             CCEEEEEEEEcCCHHHHHHHHhCHhHHHHhcCCCC---cCcCCCCEEEEEE-c-CCC----ceEEE-EEE--eCCCEEEE
Confidence            45689999999999999999999999999999832   2223445433222 1 121    22222 222  47889998


Q ss_pred             EEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccch-----HHHHHHHHHhhHHHHH-HHHHHHHHh
Q 008769          245 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLS-----EAIMEEVIYEDLPSNL-CAIRDYVEK  310 (554)
Q Consensus       245 ~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP-----~~Lver~vre~l~~~L-~ALR~rAEr  310 (554)
                      +...+   ....+|+|++.++|+|+|++....-+..+...|     ..-....+..+....| ..|++.+|+
T Consensus        75 ~~~~~---~~~~~~~l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~~L~~~le~  143 (143)
T 1xn6_A           75 SWDTD---GWVVSFDLKDLGDNKTEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVVEG  143 (143)
T ss_dssp             EETTT---TEEEEEEEEEEETTEEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHHHC
T ss_pred             EEeCC---CEEEEEEEEECCCCcEEEEEEEEccCccccccccccchhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence            86544   457789999988768999998764331000111     1123346778889999 999998873

>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}

Probab=98.59  E-value=8.6e-07  Score=78.35  Aligned_cols=126  Identities=13%  Similarity=0.093  Sum_probs=83.4

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV  247 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~v  247 (554)
                      |+.++.|+|||++||++++|.+++++|++.  .+..-.+.|+...+...+..    .....++ +++  .++++|.|+..
T Consensus         3 i~~~~~i~ap~e~Vw~altd~~~~~~W~~~--~~~~~~~~Gg~~~~~~~~~~----~~~~~~v-~~~--~p~~~l~~~~~   73 (135)
T 3q6a_A            3 IITKMQVDVPRETVFEAFVDPEKIGGFWFS--SSSERWEQGKTITLRYEEYD----AELNINI-ERV--EDNQLIAFTWG   73 (135)
T ss_dssp             EEEEEEESSCHHHHHHHHHCTTTGGGTSSS--EESSCCCTTCEEEEECGGGT----C-CEEEE-EEE--ETTTEEEEEET
T ss_pred             EEEEEEeCCCHHHHHHHHcCHHHhcccCCC--CCcccccCCCEEEEEEcCcC----ceEEEEE-EEE--cCCCEEEEEEc
Confidence            788999999999999999999999999764  22222234555443322111    1122222 222  47899998876


Q ss_pred             ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 008769          248 EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  313 (554)
Q Consensus       248 eGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~  313 (554)
                      .|     ..+|+|++.+ ++|+|++....-+. .  ...  ....+..+...+|..|++.+|....
T Consensus        74 ~g-----~~~~~l~~~~-~gT~l~~~~~~~~~-~--~~~--~~~~~~~GW~~~l~~L~~~le~g~~  128 (135)
T 3q6a_A           74 AH-----PITIQFEESE-AGTVVTTTEKDFDT-Q--DVK--QLLGQKEGWVYMLSCLKVYLEHGVT  128 (135)
T ss_dssp             TE-----EEEEEEEEET-TEEEEEEEECCCCS-S--CHH--HHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CC-----eEEEEEEECC-CCEEEEEEEcCCCc-c--hHH--HHhhchhCHHHHHHHHHHHHhcCcc
Confidence            42     7789999976 57999998653221 1  111  1246778888999999999997543

>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis}

Probab=98.52  E-value=9.3e-07  Score=80.95  Aligned_cols=137  Identities=10%  Similarity=0.123  Sum_probs=87.8

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCC----cEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  241 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V----~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr  241 (554)
                      ..|..++.|+||++.||++++|.+.+++|++.-    ..+++--+.|+..++...+.++-. + +...+ ++  ..++++
T Consensus         8 ~~i~~~~~i~Ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~-~~g~v-~e--~~p~~r   82 (164)
T 2l9p_A            8 NKIIFTRTFSAPINKVFDAYTKRELFEQWFHPQDASVTVYDFNATKGGSAFYAIQAPQMIS-Y-TIAEY-LQ--VDAPYY   82 (164)
T ss_dssp             SEEEECCEESSCHHHHHHHHHCHHHHTTTCCCTTCEEEEEECCCSTTEEEEEEEEETTEEE-E-EEEEE-SC--CBTTTE
T ss_pred             ceEEEEEEeCCCHHHHHHHhCCHHHHHhccCCCCceeeEEEEeccCCCEEEEEEECCCCCE-E-EEEEE-EE--EcCCCE
Confidence            568899999999999999999999999997641    122222234554444433333321 2 23322 22  247889


Q ss_pred             EEEEEEecC--------CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          242 ISFEQVEGD--------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       242 Isf~~veGd--------fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      |.|+...++        +.....+|+|++.++ +|+|++...+.+.  . ....++...+..+....|..|++.+++.
T Consensus        83 l~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~~-gT~l~~~~~~~~~--~-~~~~~~~~~~~~Gw~~~L~~L~~~le~~  156 (164)
T 2l9p_A           83 IEYLDYFATSKGEKDTSMPGMHITLNFEEVKG-KTTVTSTSTFPTE--S-AAQQAIDMGVETGMNSTLNQLEKLLNQK  156 (164)
T ss_dssp             EEEEEEEEBTTBSCCSSSCCEEEEEEECCCSS-SEEEEEEEECSST--T-HHHHHHHHTHHHHHHHHHHHHHHHHHSS
T ss_pred             EEEEEEecCCCCCccCCCCceEEEEEEEECCC-CEEEEEEEEcCCH--H-HHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            998865321        124577888988764 7999998765321  1 1122333356788899999999998875

>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli}

Probab=98.49  E-value=4.1e-07  Score=82.72  Aligned_cols=131  Identities=14%  Similarity=0.062  Sum_probs=87.4

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEE
Q 008769          165 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  244 (554)
Q Consensus       165 ~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf  244 (554)
                      ...|..+++|+||+++||++|+|.+++++|++.+....  .+.|+..++...|..     .+..++ +++  .++++|.|
T Consensus         8 ~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~--~~~Gg~~~~~~~g~~-----~~~~~v-~e~--~p~~~l~~   77 (160)
T 2lak_A            8 SFVVRREAHLAAPPAAVFALMTDPEKILRWMGTEAEVE--PEPGGLYLVNVTGAR-----FARGSF-REV--VPVHRLAY   77 (160)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHHCHHHHHHTSCSSEEES--CSTTCCEEECSSTTC-----CSSCCE-EEE--ETTTEEEE
T ss_pred             CceEEEEEEeCCCHHHHHHHhcChHHHhhhCCCcceee--ccCCCEEEEEEeCCc-----eEEEEE-EEE--cCCCEEEE
Confidence            45789999999999999999999999999998754332  245554433222211     111121 222  47889998


Q ss_pred             EEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 008769          245 EQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  313 (554)
Q Consensus       245 ~~veGd-----fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~  313 (554)
                      +...+.     ......+|+|++.++ +|+|++....-+       .......+..+....|..|++.+|+...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~~-------~~~~~~~~~~gw~~~L~~Lk~~le~~~~  143 (160)
T 2lak_A           78 SFGWDGSEVVPPGSSLVEIDLIEQGG-GTLLRLTHSGLP-------SAEQCAGHEEGWAHYLGRLTEVAAGRDP  143 (160)
T ss_dssp             CCCCCSSSCCCTTSCEEEEEEEECSS-SEEEEEEEECCC-------SHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             EEEecCCCCCCCCcEEEEEEEEECCC-CEEEEEEEeCCC-------CHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            765332     125688999999875 699999775212       1112345677888999999999987543

>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5

Probab=98.46  E-value=1.7e-06  Score=81.90  Aligned_cols=125  Identities=15%  Similarity=0.142  Sum_probs=83.7

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEE
Q 008769          165 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  244 (554)
Q Consensus       165 ~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf  244 (554)
                      ...+..++.|+|||+.||++|+|.+.+++|+|.+....  .+.|+..++...+ .     ....+ ++++  .++++|.|
T Consensus        35 ~~~i~~~~~i~Ap~e~VW~altdp~~l~~W~~~~~~~d--~~~Gg~~~~~~~~-~-----~~~~~-v~e~--~p~~rl~~  103 (184)
T 2nn5_A           35 TIYFGTERAISASPQTIWRYLTETDKLKQWFPELEIGE--LGVNGFWRFILPD-F-----EETMP-FTDY--AEEKYLGV  103 (184)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHCHHHHHHHCTTEEEEE--CSTTCEEEEEETT-E-----EEEEE-EEEE--ETTTEEEE
T ss_pred             CcEEEEEEEeCCCHHHHHHHHcCHHHHHHhCCCccccc--cCCCCEEEEEEeC-C-----CceEE-EEEe--cCCCEEEE
Confidence            37799999999999999999999999999998654322  2455655444322 1     11222 2222  47888988


Q ss_pred             EEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          245 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       245 ~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      +.. +    ...+|+|++..+++|+|++...+. .  + ++..  ......+....|..|++.+|..
T Consensus       104 ~~~-~----~~v~~~l~~~~~~gT~l~~~~~~~-~--g-~~~~--~~~~~~GW~~~L~~Lk~~le~g  159 (184)
T 2nn5_A          104 TWD-T----GIIYFDLKEQAPHQTLLVFSESLP-E--N-FTTP--RHKDIAGWSIVLNRLKQVVETP  159 (184)
T ss_dssp             EET-T----EEEEEEEEEEETTEEEEEEEEEEC-T--T-CSSC--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred             EEc-C----eEEEEEEEECCCCCEEEEEEEecc-C--C-ccch--hhHHHHHHHHHHHHHHHHHhcC
Confidence            763 2    477899999334579999984432 1  1 2221  1126678888999999998854

>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*

Probab=98.41  E-value=9.9e-06  Score=74.78  Aligned_cols=138  Identities=14%  Similarity=0.129  Sum_probs=91.7

Q ss_pred             ceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcC-----CcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecC
Q 008769          164 VHRCVVASITVKAPVSEVWNVMTAYETLPEIVPN-----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH  238 (554)
Q Consensus       164 ~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~-----V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~  238 (554)
                      .+..+..++.|+||+++||++++|.+.+.+|++.     +..+++--+.|+..++...+.++.. +.+..++ +++  .+
T Consensus         7 ~~~~i~~~r~i~Ap~e~Vw~a~Tdpe~l~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~G~~-~~~~g~v-~ev--~p   82 (166)
T 3put_A            7 EHTTFVIERRLTAPVARVFRAWSTPESKRQWFACHGEWVPLEYALDFRPGGTERNYTADTDGLL-HAYDARY-IDI--VP   82 (166)
T ss_dssp             EEEEEEEEEEESSCHHHHHHHHHCHHHHHHHHTCC---CCSEEEECCSTTCEEEEEEECTTSCE-EEEEEEE-EEE--ET
T ss_pred             CcceEEEEEEECCCHHHHHHHhCCHHHHHhcCCCCCCceeeEEEeCcccCCEEEEEEECCCCCE-EEEEEEE-EEE--cC
Confidence            3567899999999999999999999999999843     2334444456676655444334421 2333332 233  47


Q ss_pred             CCeEEEEEEe---c-CCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          239 EQEISFEQVE---G-DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       239 ~rrIsf~~ve---G-dfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      +++|.|+..-   | +......+|+|++.+ ++|+|++....-+. ++.  .  ....+..+-...|..|++.+|..
T Consensus        83 ~~rlv~t~~~~~~~~~~~~s~vt~~l~~~~-~gT~ltl~~~~~~~-~~~--~--~~~~~~~GW~~~L~~L~~~le~~  153 (166)
T 3put_A           83 DTRIIYAYEMKLGQTRISASLVTVAFDVEP-SGTRMVFTEQVVFL-DGY--G--DNGARLQGTEIGLDNLELFLVRE  153 (166)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEEEEEEECS-SSEEEEEEEEEEEE-TTC--C--CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEEecCCCCCCCceEEEEEEEECC-CCEEEEEEEEecCc-cch--h--hHHHHHHHHHHHHHHHHHHHhcC
Confidence            8899888652   2 112346788899987 46999998765421 110  0  11356678888999999999875

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=98.41  E-value=8.9e-06  Score=75.56  Aligned_cols=139  Identities=12%  Similarity=0.169  Sum_probs=93.6

Q ss_pred             EEEEEEEEEcCCHHHHHHH-HhCcCcc-cccCcCCcEEEEEEecC--CEEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769          166 RCVVASITVKAPVSEVWNV-MTAYETL-PEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  241 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaV-LTDyE~y-PewiP~V~sSrVL~r~g--~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr  241 (554)
                      ..++.++++++||+.+|++ +.|+.++ |.|+|.+.++.-++.++  +.++.+.....+-. -....  +++..+.....
T Consensus         4 ~~~~~E~~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~veGdg~~Gsir~~t~~~g~~~-~~~kE--rle~iD~~~~~   80 (154)
T 2wql_A            4 QSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEVKGDGGAGTVRIITLPEGSPI-TTMTV--RTDAVNKEALS   80 (154)
T ss_dssp             CEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEEEESSSSTTCEEEEECCTTCSC-CEEEE--EEEEEETTTTE
T ss_pred             eEEEEEEEecCCHHHHHHHHhhcccccchhhcccceeEEEEECCCCCCeEEEEEEcCCCCc-eEEEE--EEEEEehhhCE
Confidence            3578899999999999975 5899985 99999876664455443  24555443222211 11222  34445567889


Q ss_pred             EEEEEEecCC-----ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 008769          242 ISFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  308 (554)
Q Consensus       242 Isf~~veGdf-----r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rA  308 (554)
                      +.|++++|+.     ..+..+..+.|.++|+|.+.+...+++.++...|+-.+. ...+....+++++.+++
T Consensus        81 ~~y~iieGd~l~~~~~~~~~~ikv~p~~~ggsvvk~t~~Y~~~~~~~~~ee~~~-~~~~~~~~~~KaiEayL  151 (154)
T 2wql_A           81 YDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAIFHTKGDAVVPEENIK-FADAQNTALFKAIEAYL  151 (154)
T ss_dssp             EEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeccccccceEEEEEEEEEeeCCCCcEEEEEEEEEEECCCCCCCHHHHH-HHHHHHHhHHHHHHHHH
Confidence            9999999973     477888899999888999999999998755444443332 22333455666665554

>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti}

Probab=98.41  E-value=3.2e-06  Score=77.35  Aligned_cols=138  Identities=16%  Similarity=0.070  Sum_probs=87.5

Q ss_pred             ceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCC-----cEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecC
Q 008769          164 VHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNL-----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH  238 (554)
Q Consensus       164 ~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V-----~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~  238 (554)
                      ....+..++.|+||+++||++++|.+.+++|++..     ..+++-.+.|+..++.....++.. +.+..++ +++  .+
T Consensus         6 ~~~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~v-~e~--~p   81 (161)
T 3rd6_A            6 IHSTFTIERTYPQSPDRVFHAFADKATVRRWRVDGDGFTVAEFSFDFRVGGGEVSRFSYGGGPE-VRLDAQF-QDI--VP   81 (161)
T ss_dssp             EEEEEEEEEEESSCHHHHHHHHHCHHHHHHHTCCCCC---CEEEECCSTTCEEEEEECSTTSCC-EEEEEEE-EEE--ET
T ss_pred             cCceEEEEEEECCCHHHHHHHhcCHHHHhhccCCCCCceeeEEEEccCcCCEEEEEEECCCCCE-EEEEEEE-EEE--cC
Confidence            35678889999999999999999999999999543     223333345666555443323321 2333332 233  47


Q ss_pred             CCeEEEEEEe---cC-CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          239 EQEISFEQVE---GD-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       239 ~rrIsf~~ve---Gd-fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      +++|.|+..-   |. ......+|+|++.++ +|+|++....-+. ++.  ..  ...+..+-...|..|++.++..
T Consensus        82 ~~rl~~~~~~~~~~~~~~~s~v~~~l~~~~~-gT~lt~~~~~~~~-~~~--~~--~~~~~~GW~~~L~~L~~~le~~  152 (161)
T 3rd6_A           82 DQRIVFSYRMAIGPQPMSASLTTVELTPSGD-GTRLTYTEQGAFF-DGV--DS--AKGREEGTRGLLEALAAELQKW  152 (161)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEEEEEEEETT-EEEEEEEEEEEEE-TTC--CC--HHHHHHHHHHHHHHHHHHC---
T ss_pred             CCEEEEEEEecCCCCCCCceEEEEEEEECCC-CEEEEEEEEecCc-chh--hh--HHHHHHHHHHHHHHHHHHHhhc
Confidence            8899888652   21 223567788999875 6999998875321 110  11  1356788888999999887754

>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti}

Probab=98.39  E-value=1.1e-05  Score=73.88  Aligned_cols=140  Identities=14%  Similarity=0.070  Sum_probs=92.3

Q ss_pred             ceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCC-----cEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecC
Q 008769          164 VHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNL-----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH  238 (554)
Q Consensus       164 ~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V-----~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~  238 (554)
                      ....+..++.|+|||+.||++++|.+.+++|++..     ..+++-.+.|+..++...+.++.. +.+..++ +++  .+
T Consensus         7 ~~~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~g~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~v-~e~--~p   82 (162)
T 3q64_A            7 VHSTFIIERLYPAPPSKVFFALGNADAKRRWFTDPDNPMPGRFEMDFRVGGKEVNAGGPKDGPI-HVYTATY-QDI--VP   82 (162)
T ss_dssp             EEEEEEEEEEESSCHHHHHHHHHCHHHHHHHSSCTTSCCGGGCEECCSTTCEEEEEECCTTSCC-EEEEEEE-EEE--ET
T ss_pred             ccceEEEEEEeCCCHHHHHHHHCCHHHHhhcCCCCCCccceEEEECCccCCEEEEEEECCCCCE-EEEEEEE-EEE--cC
Confidence            35668899999999999999999999999999653     223443456666555443323321 2333332 233  47


Q ss_pred             CCeEEEEEEe---cC-CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 008769          239 EQEISFEQVE---GD-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  313 (554)
Q Consensus       239 ~rrIsf~~ve---Gd-fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~  313 (554)
                      +++|.|+...   |. ......+|+|++.++ +|+|++....-+. ++  ...  ...+..+-...|..|++.++...-
T Consensus        83 ~~rl~~~~~~~~~~~~~~~s~v~~~l~~~~~-gT~lt~~~~~~~~-~~--~~~--~~~~~~GW~~~L~~L~~~le~~~~  155 (162)
T 3q64_A           83 DQRIVYSYDMLFGETRISVSLATIQLFAEGE-GTRLVLTEQGAFL-DG--HDT--PSTREHGTGVLLDLLDAFLDKTTL  155 (162)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEEEEEEEETT-EEEEEEEEEEEEE-TT--SSC--HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEEEecCCCCCCCceEEEEEEEEcCC-CEEEEEEEEecCc-cc--hhH--HHHHHHHHHHHHHHHHHHHhhchh
Confidence            8899988752   21 124567888999875 6999998875321 11  011  145678888999999999987643

>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5

Probab=98.36  E-value=3.2e-06  Score=76.25  Aligned_cols=133  Identities=10%  Similarity=-0.052  Sum_probs=83.4

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCC----c--EEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCC
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNL----A--ISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHE  239 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V----~--sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~  239 (554)
                      ..+..++.|+|||++||++++|.+.+++|++.-    .  .+.+-.+.|+..++...+.++. .+.+..++ +++  .++
T Consensus         2 ~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~-~~~~~g~v-~e~--~p~   77 (152)
T 3eli_A            2 ADLRLEREFAVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQ-RYKVSGQV-THV--KPP   77 (152)
T ss_dssp             CEEEEEEEESSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCC-EEEEEEEE-EEE--ETT
T ss_pred             ceEEEEEEECCCHHHHHHHHcCHHHHhhccCCCCcccccceeEEcccCCcEEEEEEECCCCC-EEEEEEEE-EEE--cCC
Confidence            457889999999999999999999999998741    1  2222223455544443333332 12333332 232  478


Q ss_pred             CeEEEEEEecCC-----ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          240 QEISFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       240 rrIsf~~veGdf-----r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      ++|.|+....+.     .....+|+|++.++ +|+|++...--+     -..  ....+..+-...|..|++.++-
T Consensus        78 ~~l~~~~~~~~~~~~~~~~~~v~~~l~~~~~-gT~l~l~~~~~~-----~~~--~~~~~~~GW~~~L~~L~~~l~~  145 (152)
T 3eli_A           78 QSVGFTWGWHDDDDRRGAESHVMFIVEPCAK-GARLILDHRELG-----DDE--MSLRHEEGWTSSLRKLAAELAL  145 (152)
T ss_dssp             TEEEEEEEEECTTSCEEEEEEEEEECCBC---CEEEEEEEESCS-----CHH--HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEEEeecCCCCCCCCcEEEEEEEEECCC-CEEEEEEEccCC-----CHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence            999988654221     24566778888775 599988654111     112  2345677888999999988774

>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0

Probab=98.28  E-value=1.2e-05  Score=74.67  Aligned_cols=141  Identities=12%  Similarity=0.115  Sum_probs=91.0

Q ss_pred             CceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcC----CcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecC
Q 008769          163 GVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH  238 (554)
Q Consensus       163 g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~----V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~  238 (554)
                      .....+..++.|+||++.||++++|.+.+.+|+..    +..+++--+.|+..++...+.++-. +.+..++ +++  .+
T Consensus        10 ~~~~~i~~~r~i~Ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~G~~-~~~~g~~-~ev--~p   85 (168)
T 3uid_A           10 LDTLTLTITAEFAAPVTRIWQIYADPRQLEKVWGPPSHPATVVDHDLRPGGRVTYFMTGPDGEK-YAGYWEI-TAV--DE   85 (168)
T ss_dssp             TTTTEEEEEEEESSCHHHHHHHHHSHHHHHHHHCCTTSCCEEEEECCSTTCEEEEEEECTTSCE-EEEEEEE-EEE--ET
T ss_pred             CCCCEEEEEEEEcCCHHHHHHHhCCHHHHhhEeCCCCeeeeEEEEcccCCcEEEEEEECCCCCE-EeeEEEE-EEE--eC
Confidence            44556888999999999999999999999999653    2224443456676665544444421 2233332 233  47


Q ss_pred             CCeEEEEEEe----cC----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          239 EQEISFEQVE----GD----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       239 ~rrIsf~~ve----Gd----fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      +++|.|+..-    |.    ......+|+|++.+ ++|+|++...+..   .-....++...+..+....|..|++.++.
T Consensus        86 ~~rlv~t~~~~~~~g~p~~~~~~s~vt~~l~~~~-~gT~lt~~~~~~~---~~~~~~~~~~g~~~GW~~~L~~L~~~l~~  161 (168)
T 3uid_A           86 PHSFSFLDGFADEDFNPNTDLPVSTNVYTFTEHD-GGTRATYVGTYAS---AEALQQVLDMGVIEGASSAINQIDALLTA  161 (168)
T ss_dssp             TTEEEEEEEEECTTSCBCSSCCCEEEEEEEEEET-TEEEEEEEEECSC---HHHHHHHHHTTHHHHHHHHHHHHHHHTCS
T ss_pred             CcEEEEEEeeccCCCCcCCCCCcEEEEEEEEECC-CCEEEEEEEecCC---HHHHHHHHHhcHHHHHHHHHHHHHHHHHh
Confidence            8899888642    21    12457889999986 5799999854321   00111122224678888999999988765


Q ss_pred             h
Q 008769          311 R  311 (554)
Q Consensus       311 ~  311 (554)
                      .
T Consensus       162 ~  162 (168)
T 3uid_A          162 T  162 (168)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti}

Probab=98.26  E-value=1.1e-05  Score=73.20  Aligned_cols=132  Identities=12%  Similarity=0.137  Sum_probs=84.2

Q ss_pred             CceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeE
Q 008769          163 GVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI  242 (554)
Q Consensus       163 g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrI  242 (554)
                      .....|..++.|+|||++||++|+|.+.+++|++.   +.+-.+.|+...+.  +..+.   .+..++ +++  .++++|
T Consensus         6 ~~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~---~~~~~~~Gg~~~~~--~~~g~---~~~g~v-~e~--~p~~~l   74 (151)
T 3q63_A            6 TENRTVVVERQISHPPEKLWRALTQPHLIEEWLMK---NDFKPAVGHRFNIS--ADWGG---VLDCEV-LAV--EPNKTL   74 (151)
T ss_dssp             ---CEEEEEEEESSCHHHHHHHHHCHHHHHHHSCE---ECCCSSTTCEEEEE--CTTSC---EEEEEE-EEE--ETTTEE
T ss_pred             CCCCeEEEEEEeCCCHHHHHHHHcCHHHHHhhcCc---CCCccCCCCEEEEE--CCCCC---EEEEEE-EEE--eCCCEE
Confidence            34567899999999999999999999999999984   22223355554443  32221   223332 232  478999


Q ss_pred             EEEEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          243 SFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       243 sf~~veGd-----fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      .|+...++     ......+|+|++.++ +|+|++....-+. ..  ..  ....+..+-...|..|++.+|..
T Consensus        75 ~~~~~~~~~~~~~~~~s~v~~~l~~~~~-gT~l~l~~~g~~~-~~--~~--~~~~~~~GW~~~L~~L~~~le~~  142 (151)
T 3q63_A           75 SYTWNLAHQDPAFDLRSVVTFTLTPTPT-GTHLRMEQSGFRP-DQ--RR--AYGGAKMGWPQFFEKLEQLLDRT  142 (151)
T ss_dssp             EEECBBCCSSTTTCBCCEEEEEEEECSS-SEEEEEEEECCCT-TC--HH--HHHHHHHHHHHHHHHHHHHHC--
T ss_pred             EEEEecCCCCCCCCCCeEEEEEEEEcCC-CEEEEEEEeCCCc-ch--HH--HHHhhhhCHHHHHHHHHHHHhcc
Confidence            99875421     124467789999876 5999998763221 11  11  12345678888999999988764

>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5

Probab=98.25  E-value=5.4e-06  Score=78.47  Aligned_cols=131  Identities=6%  Similarity=0.079  Sum_probs=86.6

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEecc-------------ceeEEEEEEEEEE
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCK-------------GLLYMVLHARVVM  232 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~-------------gil~~~~~~rvvL  232 (554)
                      ..++.++.|+||+++||++|+|.+.+++|++.+   .+-.+.|+..++......             +. ...+..++ +
T Consensus        19 ~~i~~~~~i~Ap~e~Vw~altdpe~~~~W~~~~---~~d~~~Gg~~~~~~~~~~~~~~~~p~~~~~~g~-~~~~~g~v-~   93 (191)
T 2k5g_A           19 QSIRFERLLPGPIERVWAWLADADKRARWLAGG---ELPRQPGQTFELHFNHAALTAETAPARYAQYDR-PIVARHTL-L   93 (191)
T ss_dssp             SSEEEEEEESSSSHHHHHHHHCHHHHTTTSCCC---CCCSSTTCEEEEEECGGGSCCSSCCSSCSGGGS-CEEEEEEE-E
T ss_pred             CeEEEEEEeCCCHHHHHHHHcCHHHHhhcCCCC---CCCccCCCEEEEEEcCCccccccCcccccccCC-CceeEEEE-E
Confidence            347889999999999999999999999999985   222345565555443211             00 12333332 2


Q ss_pred             EEeecCCCeEEEEEEecCC-ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          233 DICEQHEQEISFEQVEGDF-DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       233 dv~E~~~rrIsf~~veGdf-r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      ++  .++++|.|+...++. .....+|+|++.++ +|+|++....-+  +   +.  ....+..+...+|..|++.+|..
T Consensus        94 e~--~pp~rl~~~~~~~~~~~~~~v~~~l~~~~~-gT~l~~~~~~~~--~---~~--~~~~~~~GW~~~L~~L~~~le~~  163 (191)
T 2k5g_A           94 RC--EPPRVLALTWGGGAGEAPSEVLFELSEAGE-QVRLVLTHTRLA--D---RA--AMLDVAGGWHAHLAVLAGKLAGQ  163 (191)
T ss_dssp             EE--ETTTEEEEECCCCSSSSCCEEEEEEEECSS-SEEEEEEEECCC--S---HH--HHHHHTTTTTTHHHHHHHHHHTS
T ss_pred             Ee--cCCCEEEEEeecCCCCCCEEEEEEEEEcCC-CEEEEEEEecCC--C---HH--HHHHHHHhHHHHHHHHHHHHCCC
Confidence            32  478999887654322 14577899999875 599998876212  1   12  22456677788999999998754

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A

Probab=98.23  E-value=3.6e-05  Score=68.52  Aligned_cols=108  Identities=8%  Similarity=0.229  Sum_probs=79.2

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEE
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE  245 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~  245 (554)
                      ..+..++.|++||+.||+++.|+..+| |-+.                      |-   .     +++..+..+..+.|+
T Consensus         5 g~~~~e~~i~~~a~k~w~~~~~~~~~p-~g~~----------------------G~---~-----~ie~iD~~~~~~~y~   53 (122)
T 1vjh_A            5 GALSVKFDVKCPADKFFSAFVEDTNRP-FEKN----------------------GK---T-----EIEAVDLVKKTMTIQ   53 (122)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHHHTTSC-SSTT----------------------CE---E-----EEEEEETTTTEEEEE
T ss_pred             cEEEEEEEecCCHHHHHHHHhhcccCC-ccCC----------------------Cc---c-----EEEEEecccCEEEEE
Confidence            468899999999999999999998888 5332                      10   0     234445678899999


Q ss_pred             EEecCC----ceeEEEEEEEEcC-CCeEEEEEEEEEEeccCccc-hHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769          246 QVEGDF----DSFQGKWLFEQLG-SHHTLLKYSVESKMQKNSLL-SEAIMEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       246 ~veGdf----r~f~G~W~Leplg-dG~TrVtY~v~~eP~~gg~L-P~~Lver~vre~l~~~L~ALR~rAE  309 (554)
                      +++|++    +.+.++|+|.+.+ +++|.+++...|+..++... |.-+     .+.+..+++++.+++-
T Consensus        54 iieGd~~~~~~~~~~~~~v~~~~~~~gs~vkwt~~ye~~~~~~~~p~~~-----~~~~~~~~k~ie~yll  118 (122)
T 1vjh_A           54 MSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSI-----IDESVKYFKKLDEAIL  118 (122)
T ss_dssp             EECTTGGGTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHHH-----HHHHHHHHHHHHHHHH
T ss_pred             EEEccccccEEEEEEEEEEEEecCCCCeEEEEEEEEEECCCCCCCHHHH-----HHHHHHHHHHHHHHHh
Confidence            999997    6999999999973 56799999999997644333 3323     3344556666666543

>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5

Probab=98.19  E-value=7e-06  Score=73.66  Aligned_cols=131  Identities=15%  Similarity=0.205  Sum_probs=82.5

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEE
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE  245 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~  245 (554)
                      ..++.++.|+||+++||++|+|.+++++|++.+   .+-.+.|+...+.. . .+.    +..++ +++  .++++|.|+
T Consensus         5 ~~i~~~~~i~Ap~e~Vw~altd~~~~~~W~~~~---~~~~~~Gg~~~~~~-~-~g~----~~~~v-~e~--~p~~~l~~~   72 (146)
T 1xn5_A            5 PDIKKEVRFNAPIEKVWEAVSTSEGLAFWFMEN---DLKAETGHHFHLQS-P-FGP----SPCQV-TDV--ERPIKLSFT   72 (146)
T ss_dssp             CCEEEEEEESSCHHHHHHHTTSHHHHHTTSCCB---CCCSCTTCEEEEEC-S-SCE----EEEEE-EEE--ETTTEEEEE
T ss_pred             cEEEEEEEEcCCHHHHHHHHhChhHHHHhcCCC---CCCccCCCEEEEEe-c-CCc----eEEEE-EEE--eCCcEEEEE
Confidence            458899999999999999999999999999864   22123445443332 1 121    22222 222  478899888


Q ss_pred             EEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCc-----cchHHHHHHHHHhhHHHHH-HHHHHHHHhhh
Q 008769          246 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNS-----LLSEAIMEEVIYEDLPSNL-CAIRDYVEKRE  312 (554)
Q Consensus       246 ~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg-----~LP~~Lver~vre~l~~~L-~ALR~rAEr~~  312 (554)
                      ...   ......|+|++.++ +|+|++....-+..+-     ..........+..+-...| ..|++.++...
T Consensus        73 ~~~---~~~~~~~~l~~~~~-gT~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GW~~~l~~~L~~~l~~~~  141 (146)
T 1xn5_A           73 WDT---DGWSVTFHLKEEEN-GTIFTIVHSGWKQGDTKVEKAGAESAVVHERMDRGWHDLVNERLRQIVELEH  141 (146)
T ss_dssp             ETT---TTEEEEEEEEECSS-SEEEEEEEECCCSTTCBCSSSSSBHHHHHHHHHHHHHHHTTTTTHHHHC---
T ss_pred             EeC---CCEEEEEEEEEcCC-CEEEEEEEEEecCCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence            652   23568899999875 5999988753221100     0001223455677888889 99988877543

>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A

Probab=97.99  E-value=3.3e-06  Score=76.47  Aligned_cols=131  Identities=18%  Similarity=0.267  Sum_probs=82.9

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEE
Q 008769          165 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  244 (554)
Q Consensus       165 ~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf  244 (554)
                      ...+..++.|+|||++||++|+|.+++++|++.+   ..-.+.|+...+.. . .+.    +..++ +++  .++++|.|
T Consensus         9 ~~~i~~~~~i~Ap~e~Vw~altd~~~~~~W~~~~---~~~~~~Gg~~~~~~-~-~g~----~~~~v-~e~--~p~~~l~~   76 (152)
T 2kew_A            9 LPDITKSITLEAPIQKVWETVSTSEGIAKWFMPN---DFQLKEGQEFHLQS-P-FGP----SPCKV-LAV--QAPTELSF   76 (152)
T ss_dssp             SCCEEEEEEECSCHHHHHHHSSSSHHHHHHHCSC---CCCSCSSCCBCSSS-S-CCS----CCBEE-EEE--ETTTEEEE
T ss_pred             ccEEEEEEEECCCHHHHHHHHhCHHHHHHhcCCC---CCCCCCCCEEEEEe-c-CCc----eEEEE-EEE--eCCcEEEE
Confidence            4568999999999999999999999999999873   11112344322211 1 111    12221 222  47889988


Q ss_pred             EEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccch-----HHHHHHHHHhhHHHHH-HHHHHHHHhh
Q 008769          245 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLS-----EAIMEEVIYEDLPSNL-CAIRDYVEKR  311 (554)
Q Consensus       245 ~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP-----~~Lver~vre~l~~~L-~ALR~rAEr~  311 (554)
                      +...+   ....+|+|++.++ +|+|++....-+......|     .......+..+-..+| ..|++.++..
T Consensus        77 ~~~~~---~~~~~~~l~~~~~-gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~L~~~le~g  145 (152)
T 2kew_A           77 EWDTE---GWVVTFQLEDLGE-KTGFTLIHSGWKEPNQVIGKANEKSSVVRGKMDGGWTGIVNERLRKAVEEL  145 (152)
T ss_dssp             ECTTS---CCEEEEEEECCSS-CEEEEEEECCSSCCSBCSSSSSSBHHHHHHHHHHHHHHHTTTHHHHHHTCS
T ss_pred             EEccC---CEEEEEEEEECCC-CEEEEEEEEeccCcccccccccchhHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            75433   4577899999876 5999987652221000011     1122346778889999 9999998764

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=97.96  E-value=9e-06  Score=72.72  Aligned_cols=65  Identities=14%  Similarity=0.304  Sum_probs=58.5

Q ss_pred             CCCCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHhcc
Q 008769            1 MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFG   67 (554)
Q Consensus         1 mv~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~~~   67 (554)
                      +++|+|+.++|.|+++|.+++  |.|+|++++.++-.++..++...+.+.....|.|..+||+++++
T Consensus        83 ~~~G~f~~~~g~w~f~~~~~g--t~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~f~~r~~~~~~  147 (148)
T 1t17_A           83 LLYGPFKRLNNGWRFMPEGDA--TRVEFVIEFAFKSALLDAMLAANVDRAAGKLIACFEARAQQLHG  147 (148)
T ss_dssp             ESSTTSSCEEEEEEEEEETTE--EEEEEEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ECCCChhccEEEEEEEECCCC--eEEEEEEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            468999999999999997654  99999999999887888999999999999999999999998764

>4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A

Probab=97.93  E-value=5.4e-05  Score=71.73  Aligned_cols=125  Identities=15%  Similarity=0.172  Sum_probs=84.3

Q ss_pred             CCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769          162 GGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  241 (554)
Q Consensus       162 ~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr  241 (554)
                      .+..+.+..++.|+||+++||++|+|.+.+++|++.+   .+-.+.|+...+.  +.       .... ++++  .++++
T Consensus        17 ~~~~~~i~~~r~i~Appe~Vw~alTdpe~l~~W~~p~---~~d~~~Gg~~~~~--~~-------~~g~-v~e~--~pp~r   81 (181)
T 4fpw_A           17 AGEARSIIIRQRYDAPVDEVWSACTDPNRINRWFIEP---KGDLREGGNFALQ--GN-------ASGD-ILRC--EPPRR   81 (181)
T ss_dssp             TEEEEEEEEEEEESSCHHHHHHHHHCHHHHHHHSCCE---ESCCSTTCEEEES--SS-------CEEE-CCEE--ETTTE
T ss_pred             CCCCceEEEEEEECCCHHHHHHHHcChHHHhhccCCC---ccCCCCCCEEEEE--ec-------CCEE-EEEE--cCCcE
Confidence            3457789999999999999999999999999998753   2222344443221  11       0111 1222  47899


Q ss_pred             EEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          242 ISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       242 Isf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      |.|+...++-.....+|+|++.+ ++|+|++.....+      +. . ...+..+-...|..|++.++.
T Consensus        82 l~~tw~~~~~~~s~vt~~l~~~~-~gT~Ltl~~~~~~------~e-~-~~~~~~GW~~~L~~L~~~L~G  141 (181)
T 4fpw_A           82 LTISWVYEGKPDSEVELRLSEEG-DGTLLELEHATTS------EQ-M-LVEVGVGWEMALDFLGMFIRG  141 (181)
T ss_dssp             EEEEEBCTTSCCEEEEEEEEEET-TEEEEEEEEEESC------HH-H-HHHHHHHHHHHHHHHHHHC--
T ss_pred             EEEEEEcCCCCcEEEEEEEEECC-CcEEEEEEEEcCC------HH-H-HHHHHHhHHHHHHHHHHHhCC
Confidence            99987654433457889999975 6899999876421      22 2 245677888899999988754

>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5

Probab=97.85  E-value=4e-05  Score=68.51  Aligned_cols=124  Identities=15%  Similarity=0.091  Sum_probs=81.5

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEE
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE  245 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~  245 (554)
                      ..+..++.|+||+++||++|+|.+.+++|++....  +-.+.|+..++.    .+-    +..++ +++  .++++|.|+
T Consensus        11 ~~i~~~~~i~ap~e~Vw~altdp~~~~~W~~~~~~--~d~~~Gg~~~~~----~G~----~~g~v-~e~--~p~~~l~~~   77 (145)
T 1x53_A           11 CKITLKETFLTSPEELYRVFTTQELVQAFTHAPAT--LEADRGGKFHMV----DGN----VSGEF-TDL--VPEKHIVMK   77 (145)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTCHHHHHHHSCSCCB--CCCSTTCCCBBT----TTT----EECCE-EEE--ETTTEEEEE
T ss_pred             cEEEEEEEECCCHHHHHHHhCCHHHHHHhcCCCce--EECCCCCEEEEE----CCe----eEEEE-EEE--eCCCEEEEE
Confidence            56889999999999999999999999999865432  222344433221    121    12222 232  478899887


Q ss_pred             EEecCC---ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHH-HHHHHHHHHHhh
Q 008769          246 QVEGDF---DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDYVEKR  311 (554)
Q Consensus       246 ~veGdf---r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~-~L~ALR~rAEr~  311 (554)
                      ....+.   ....-+|+|++.+ ++|+|++....-+.     ..   ...+..+... +|..|++.+|..
T Consensus        78 ~~~~~~~~~~~~~v~~~l~~~~-~gT~l~~~~~~~~~-----~~---~~~~~~Gw~~~~l~~L~~~le~g  138 (145)
T 1x53_A           78 WRFKSWPEGHFATITLTFIDKN-GETELCMEGRGIPA-----PE---EERTRQGWQRYYFEGIKQTFGYG  138 (145)
T ss_dssp             EEETTSCTTCCEEEEEECCBCS-SCEEEEEEEEEEEH-----HH---HHHHHHTTHHHHHHHHHHHTCCC
T ss_pred             EecCCCCCCCcEEEEEEEEECC-CCEEEEEEEECCCH-----HH---HHHHHhchhHHHHHHHHHHHhcC
Confidence            654322   1356788898865 57999998543331     11   3567778887 799999987654

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=97.68  E-value=0.00014  Score=78.11  Aligned_cols=104  Identities=14%  Similarity=0.194  Sum_probs=81.5

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCC---EEEEEEEeccceeEEEEEEEEEEEEee-cCCCeEE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN---KVRILQEGCKGLLYMVLHARVVMDICE-QHEQEIS  243 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~---~vrv~q~g~~gil~~~~~~rvvLdv~E-~~~rrIs  243 (554)
                      ++.+++|+||+++||+..+|.+++++|+|.....+++...+.   +..++..  .+  ++.|++++  +.++ .+++++.
T Consensus         3 ~~~~~~i~~p~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~~~~--~~--~~~w~~~~--~~t~~~~~~~F~   76 (516)
T 3oh8_A            3 LTTSHFIPFPREMVWDWHTRKGAVARLTPPFIPLNPITQAERLADGTTIFSL--PA--GLKWVARH--DLSGFLNGSRFT   76 (516)
T ss_dssp             EEEEEEESSCHHHHHHHHHSTTHHHHHSCTTSSCEECSCCSCSSSCEEEEEC--ST--TCEEEEEE--CGGGCBTTTEEE
T ss_pred             EEEEEEccCCHHHHHHHhcCcchHHHhCCCCCceEEecCCCCCcCCeEEEec--CC--CcEEEEEE--ccccccCCCeEE
Confidence            577899999999999999999999999999999999865332   2223222  11  25676663  1133 5678999


Q ss_pred             EEEEecC---CceeEEEEEEEEcCCCeEEEEEEEEEEe
Q 008769          244 FEQVEGD---FDSFQGKWLFEQLGSHHTLLKYSVESKM  278 (554)
Q Consensus       244 f~~veGd---fr~f~G~W~LeplgdG~TrVtY~v~~eP  278 (554)
                      ..++.|+   |..+.-++.|++.++ +|+++..+++.+
T Consensus        77 d~~~~gp~~~~~~w~h~h~f~~~~~-gt~~~d~~~~~~  113 (516)
T 3oh8_A           77 DVCLTAPVKALANWRHVHNFVDQDG-GTLITDSVSTRL  113 (516)
T ss_dssp             EECCSCSSGGGSSCEEEEEEEEETT-EEEEEEEEECSS
T ss_pred             EEeccCcccceeeeEEEEEEEEcCC-CcEEEEEEEeeC
Confidence            9999999   889999999999875 699999999874

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=97.63  E-value=6e-05  Score=64.68  Aligned_cols=62  Identities=18%  Similarity=0.361  Sum_probs=52.9

Q ss_pred             CCCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHH----HHHhcchhHHHHHHHHHHHHh
Q 008769            2 VDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLE----RIIRSDLPVNLQALACRAERS   65 (554)
Q Consensus         2 v~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve----~~~~~dlp~nL~Ai~~~ae~~   65 (554)
                      ++|+|+.|.|.|+++|.++  +|.++|++++.|...+|..++.    ..+++.+...|.+++++||+.
T Consensus        80 ~~g~~~~~~~~~~~~~~~~--gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~~  145 (147)
T 2d4r_A           80 PEGDFDRYEGTWVFLPEGE--GTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAA  145 (147)
T ss_dssp             EEESCSEEEEEEEEEECSS--SEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCChhheEEEEEEEECCC--CcEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4689998999999999754  4999999999998777766666    666699999999999999973

>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A*

Probab=97.62  E-value=0.00045  Score=62.91  Aligned_cols=135  Identities=15%  Similarity=0.117  Sum_probs=85.6

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCcccccCcC-C------cEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCC
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEIVPN-L------AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHE  239 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~-V------~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~  239 (554)
                      .|..++.|+||++.||++++|  .+.+|++. .      ..+++- +.|+.. .. .+-++..+ . .. .++++  .++
T Consensus         5 ~i~~~r~~~Ap~e~Vw~A~Td--~l~~W~~p~~~~~~~~~~~~~d-r~GG~~-~~-~~~~G~~~-~-~g-~v~ev--~pp   74 (155)
T 1zxf_A            5 FVRHSVTVKADRKTAFKTFLE--GFPEWWPNNFRTTKVGAPLGVD-KKGGRW-YE-IDEQGEEH-T-FG-LIRKV--DEP   74 (155)
T ss_dssp             CEEEEEEESSHHHHHHHHHTT--CSSSSSSGGGSTTTTCSSCEEE-TTTTEE-EC-CCTTTSCC-C-CE-EEEEE--ETT
T ss_pred             eEEEEEEEeCCHHHHHHHHHh--hHHhhcCCCccccCCCceEEEE-CCCCEE-EE-ECCCCCeE-e-EE-EEEEE--CCC
Confidence            478899999999999999999  48888742 1      245555 666654 22 22233211 1 11 22333  488


Q ss_pred             CeEEEEEEe-cCC-----ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccch--HHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          240 QEISFEQVE-GDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLS--EAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       240 rrIsf~~ve-Gdf-----r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP--~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      ++|.|+-.- ++.     ....-+|+|++.++|+|+|+.....-+   ..-+  ...+...+..+-...|..|++.+++.
T Consensus        75 ~rl~~tw~~~~~~~~~~~~~s~vt~~l~~~~~g~T~ltl~~~~~~---~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~~~  151 (155)
T 1zxf_A           75 DTLVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFD---RMGTKHAKRVRNGMDKGWPTILQSFQDKIDEE  151 (155)
T ss_dssp             TEEEEECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEEECSST---TSCHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEecCCCCCCCCCCcEEEEEEEEECCCCcEEEEEEEeccc---ccccchhHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence            999888432 211     235678999998877799988764211   1112  22344566678899999999998876


Q ss_pred             hCC
Q 008769          312 EGD  314 (554)
Q Consensus       312 ~~~  314 (554)
                      .+.
T Consensus       152 ~a~  154 (155)
T 1zxf_A          152 GAK  154 (155)
T ss_dssp             HTT
T ss_pred             hcc
Confidence            543

>2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora}

Probab=97.62  E-value=0.0018  Score=61.93  Aligned_cols=126  Identities=17%  Similarity=0.204  Sum_probs=86.5

Q ss_pred             CCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769          162 GGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  241 (554)
Q Consensus       162 ~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr  241 (554)
                      .+..+.+..+-+++|||++||+.|||.+.+.+|++.   +.+-.+.|+..++.     +    ....+ ++++  .++++
T Consensus        28 ~~~~~~l~i~R~f~Ap~e~VW~AlTdpe~l~~W~~~---~~~d~r~GG~~~~~-----~----~~~g~-v~ev--~pp~r   92 (192)
T 2luz_A           28 AGEARSIIIRQRYDAPVDEVWSACTDPNRINRWFIE---PKGDLREGGNFALQ-----G----NASGD-ILRC--EPPRR   92 (192)
T ss_dssp             TEEEEEEEEEEEESSCHHHHHHHHHCHHHHTTTSCC---EEECCSTTSEEEET-----T----SEEEE-EEEE--ETTTE
T ss_pred             CCCceEEEEEEEeCCCHHHHHHHHcCHHHHheeeCC---CcccCccCcEEEee-----c----cccce-EEEE--ecCee
Confidence            455778899999999999999999999999999975   33434455544331     1    11112 2333  47899


Q ss_pred             EEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          242 ISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       242 Isf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      |.|+....+-....-+|+|++.++ +|+|++.....       |.... ..+..+-...|..|...++..
T Consensus        93 L~~tw~~~~~~~~~vt~~L~~~g~-gT~Ltl~h~~~-------~~~~~-~~~~~GW~~~Ld~L~~~L~g~  153 (192)
T 2luz_A           93 LTISWVYEGKPDSEVELRLSEEGD-GTLLELEHATT-------SEQML-VEVGVGWEMALDFLGMFIRGD  153 (192)
T ss_dssp             EEEEEEESSSCEEEEEEEEEEETT-EEEEEEEEEES-------CHHHH-HHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEeecCCCCceEEEEEEEcCC-cEEEEEEEECC-------CHHHH-HHHhccHHHHHHHHHHHhCCC
Confidence            998865544345567899999875 69999877542       22222 234557788999999998754

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A

Probab=97.62  E-value=0.00011  Score=68.64  Aligned_cols=62  Identities=15%  Similarity=0.305  Sum_probs=53.8

Q ss_pred             CCCCCcceeeeEEeeecCCCCceEEEE--EEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769            2 VDGDFKKFEGKWSIKSGTRSSTTTLSY--EVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS   65 (554)
Q Consensus         2 v~GDF~~f~G~W~l~~~~~~~~t~L~Y--~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~   65 (554)
                      ++|+|+.|.|.|+++|.+++  |.++|  +.++.|..-+|...+..++..+++..|.+||++||+.
T Consensus        84 ~~gPf~~~~g~W~f~p~~~g--t~V~~~~df~~~~~~p~~~~~~~~av~~~~~~~L~~LK~~aE~~  147 (169)
T 3tvq_A           84 ETGPFAYMNLHWTYRAVAGG--TEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDR  147 (169)
T ss_dssp             SCTTEEEEEEEEEEEEETTE--EEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChhheeeEEEEEECCCC--EEEEEEEEEEecCCCcccHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence            46899999999999998655  77766  5667777778888899999999999999999999974

>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum}

Probab=97.58  E-value=0.00045  Score=63.63  Aligned_cols=132  Identities=15%  Similarity=0.105  Sum_probs=82.6

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEE
Q 008769          165 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  244 (554)
Q Consensus       165 ~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf  244 (554)
                      ...+..++.|+|||++||++++|.+.+..|++. ..+++-.+.|+...+.    .+.    +..+ ++++  .++++|.|
T Consensus        18 ~~~i~~~r~~~ap~e~Vw~A~Tdpe~l~~W~~g-~~~~~d~~~GG~~~~~----~G~----~~g~-v~ev--~p~~rlv~   85 (158)
T 3ni8_A           18 GMSFEITEEYYVPPEVLFNAFTDAYTLTRLSRG-SLAEVDLKVGGKFSLF----SGS----ILGE-FTEI--TKPHKIVE   85 (158)
T ss_dssp             CCCEEEEEEESSCHHHHHHHHHCHHHHHHHTTT-SCCEECCSTTCEEEET----TTT----EEEE-EEEE--ETTTEEEE
T ss_pred             CceEEEEEEECCCHHHHHHHhcCHHHHHhhcCC-CccEEEccCCCEEEEe----cCC----EEEE-EEEE--eCCcEEEE
Confidence            456888999999999999999999999999983 2234434556654332    121    1222 2233  47889887


Q ss_pred             EEEecCC---ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHH-HHHHHHHHHH
Q 008769          245 EQVEGDF---DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDYVE  309 (554)
Q Consensus       245 ~~veGdf---r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~-~L~ALR~rAE  309 (554)
                      +..-.+.   ....-+|+|++.++++|+|++....-|........ ........+-.. +|..|++.++
T Consensus        86 tw~~~~~~~~~~s~vt~~l~~~~~~~T~ltl~~~g~~~~~~~~~~-~~~~~~~~GW~~~~L~~Lk~~Le  153 (158)
T 3ni8_A           86 KWKFRDWNECDYSTVTVEFISVKENHTKLKLTHNNIPASNKYNEG-GVLERCKNGWTQNFLHNIEVILG  153 (158)
T ss_dssp             EEEETTSCSSCCEEEEEEEEEEETTEEEEEEEEECCCSSCTTCCC-CHHHHHHHHHHHTHHHHHHHTSC
T ss_pred             EEEecCCCCCCcEEEEEEEEecCCCCEEEEEEEEccCchhhhccc-hhHHHHHhChhHHHHHHHHHHhC
Confidence            6543222   13577899999655689999977633321100000 012355677777 5888887755

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A

Probab=97.47  E-value=0.00022  Score=66.07  Aligned_cols=62  Identities=13%  Similarity=0.263  Sum_probs=51.7

Q ss_pred             CCCCCcceeeeEEeeecCCCCceEEEEE--EEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769            2 VDGDFKKFEGKWSIKSGTRSSTTTLSYE--VNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS   65 (554)
Q Consensus         2 v~GDF~~f~G~W~l~~~~~~~~t~L~Y~--~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~   65 (554)
                      ++|+|+.++|.|+++|.++  +|.++|.  .+++|..-++...+..++.++++..|.+||+.||+.
T Consensus        84 ~~gPf~~l~g~W~f~p~~~--gt~V~~~~df~~~~~~p~~~~~~~~~~~~~~~~~L~~lK~~~E~~  147 (159)
T 3tl1_A           84 ETGPFQYMNIVWEYAETAE--GTVMRWTQDFAMKPDAPVDDAWMTDNINRNSRTQMALIRDRIEQA  147 (159)
T ss_dssp             SCTTEEEEEEEEEEEEETT--EEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCChhhccCEEEEEECCC--CEEEEEEEEEEecCCCCCCHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence            3799999999999999865  5777766  456666556666699999999999999999999975

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}

Probab=97.30  E-value=0.00033  Score=64.67  Aligned_cols=62  Identities=19%  Similarity=0.258  Sum_probs=51.3

Q ss_pred             CCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCC-------------CHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769            3 DGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF-------------PAIFLERIIRSDLPVNLQALACRAERS   65 (554)
Q Consensus         3 ~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~-------------P~~lve~~~~~dlp~nL~Ai~~~ae~~   65 (554)
                      +|+|+.+.|.|++++.+ ..+|+++|.+++.++-.+             +...+++.+.+++..+|.++|++||+.
T Consensus        86 ~gpf~~~~g~w~f~~~~-~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~l~~~~~~~L~~lk~~aE~~  160 (172)
T 3tfz_A           86 APIVGHMSGEWRAFTLD-AERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVVERNSVADLNAVLGEAERR  160 (172)
T ss_dssp             CTTEEEEEEEEEEEEEE-TTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCChhhcEEEEEEEECC-CCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            58999999999999975 357888888777654333             346799999999999999999999974

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=97.05  E-value=0.00087  Score=62.34  Aligned_cols=58  Identities=14%  Similarity=0.353  Sum_probs=53.1

Q ss_pred             CcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769            6 FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS   65 (554)
Q Consensus         6 F~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~   65 (554)
                      ++.+.|.|.|+|  +..+|.++|.+.+-|+-++|..|+...+++.++..|.++|++|++.
T Consensus       123 ~~~~~~~~~i~p--~~~~t~vt~~~~~dp~G~iP~~lvn~~~~~~~~~~l~~L~k~~~~~  180 (189)
T 3qsz_A          123 IPRAKGQWTLVP--DADGVDVTYQMHASPGGSIPSWLANQTVVETPFGTLKALRSHLRQA  180 (189)
T ss_dssp             CCCEEEEEEEEE--CSSSEEEEEEEEECSCSSSCHHHHHHTTTHHHHHHHHHHHHHHTC-
T ss_pred             eeEeeEEEEEEE--CCCeEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            567899999999  4457999999999999999999999999999999999999999864

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=96.63  E-value=0.0046  Score=56.51  Aligned_cols=67  Identities=10%  Similarity=0.335  Sum_probs=54.8

Q ss_pred             CCCCC-cceeeeEEeeecCCCCceEEEEEEEeecCCCCC---HHHHHHHHhcchhHHHHHHHHHHHHhcccc
Q 008769            2 VDGDF-KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFP---AIFLERIIRSDLPVNLQALACRAERSFGWN   69 (554)
Q Consensus         2 v~GDF-~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P---~~lve~~~~~dlp~nL~Ai~~~ae~~~~~~   69 (554)
                      ++|+| +..+|.|+++|.++ .+|.++|.++..++..+|   ..++...+.+-.-..+.|..+||..+|...
T Consensus        86 ~~g~~~~~l~g~w~f~p~~~-g~t~V~~~~~~e~~~pl~~ll~~~~~~~~~~~~~~~v~af~~ra~~~~~~~  156 (161)
T 3p9v_A           86 IKGEGNGVVSGSWTLSAKGD-NATAVKFQTSAELTVPLPSLLKLAISPVIKHEFNSLVDTYMANLKKAFLEH  156 (161)
T ss_dssp             CTTSTTEEEEEEEEEEESSS-SCEEEEEEEEEEEEECSCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred             ecCccceeEEEEEEEEECCC-CeEEEEEEEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            68999 89999999999864 358999999999986666   346677777788888899999999876543

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=95.99  E-value=0.018  Score=54.19  Aligned_cols=58  Identities=14%  Similarity=0.192  Sum_probs=52.7

Q ss_pred             cceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769            7 KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS   65 (554)
Q Consensus         7 ~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~   65 (554)
                      +.+.|.|.|+|.. ..+|.++|.+.+-|+-++|..|+...+.+.++.-|..++++|+++
T Consensus       153 ~~~~~~~~i~p~~-~~~t~v~~~~~~Dp~G~iP~~l~n~~~~~~~~~~l~~l~k~~~~y  210 (214)
T 1ln1_A          153 KQYKQSLAIESDG-KKGSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNY  210 (214)
T ss_dssp             CCEEEEEEEEECS-SSSEEEEEEEEECCSSCCCHHHHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred             EEEEEEEEEecCC-CCceEEEEEEEECCCCcccHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence            4588999999974 457999999999999999999999999999999999999999854

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A

Probab=95.76  E-value=0.017  Score=52.31  Aligned_cols=63  Identities=14%  Similarity=0.177  Sum_probs=52.8

Q ss_pred             CCCC--CcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769            2 VDGD--FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS   65 (554)
Q Consensus         2 v~GD--F~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~   65 (554)
                      ++|+  |+.|.|.|+|.|...+.+|.++|...+.| -++.-..+...+..=+-.+|.+|++++|.+
T Consensus        75 v~g~~~~~~~~~~~~v~p~~~~~gt~v~w~~~~~p-~g~~~~~~~~~~~~~~~~~L~~Lk~~~e~~  139 (146)
T 3f08_A           75 MNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTP-VAVSDEEAINLVHGIYSDGLKALQHAFLDL  139 (146)
T ss_dssp             EECSSSEEEEEEEEEEEECSSTTCEEEEEEEEEEE-SSSCHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             ecCCCceeEEEEEEEEEEecCCCcEEEEEEEEEEe-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5676  58899999999954567899999999998 566666778888889999999999999865

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}

Probab=95.57  E-value=0.018  Score=53.20  Aligned_cols=69  Identities=12%  Similarity=0.029  Sum_probs=50.7

Q ss_pred             CcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHhccccccccccccC
Q 008769            6 FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNS   78 (554)
Q Consensus         6 F~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~~~~~~~~~~~~~~   78 (554)
                      ++.|.|.|+|.|.+++.+|.++|...+.|.-    .++...++.-+..+|.+|++++|+.-....++.++|.|
T Consensus        88 ~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~----~~~~~~~~~~~~~~L~~Lk~~~e~~~~~~~~~~~~~~~  156 (160)
T 3p51_A           88 IYNYVGNLHLLPVTIDDTTFVEWSGSWESAS----TEAVEYMNTVYRSLLADLAAEFTSESRRSEWIDQLEHH  156 (160)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEEEEEEESC----SHHHHHHHHHHHHHHHHHHHHSCTTTCC----------
T ss_pred             eeEEEEEEEEEEecCCCCEEEEEEEEEEeCH----HHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHhhhc
Confidence            4589999999998756789999999999973    27788888999999999999999875666666666653

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}

Probab=95.54  E-value=0.005  Score=54.88  Aligned_cols=62  Identities=16%  Similarity=0.033  Sum_probs=49.4

Q ss_pred             CCCC--CcceeeeEEeeecCCCCceEEEEEEEeec-CCCCCHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769            2 VDGD--FKKFEGKWSIKSGTRSSTTTLSYEVNVIP-RLNFPAIFLERIIRSDLPVNLQALACRAERS   65 (554)
Q Consensus         2 v~GD--F~~f~G~W~l~~~~~~~~t~L~Y~~~v~P-~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~   65 (554)
                      ++|+  |+.|.+.|+|+|. ++.+|.++|..++.| +..++...+. .++.++...|.++++.+|+.
T Consensus        80 ~~g~~~~~~~~~~~~l~~~-~~~gt~v~w~~~f~~~p~~~~~~~~~-~~~~~~~~~L~~Lk~~~e~~  144 (151)
T 2le1_A           80 PDPPFPITNHRAVLEVVPR-DDRHCTVVWTAMFDCSPETARELESV-IGDGVFAVGLNALAERYGRL  144 (151)
T ss_dssp             EECSSSEEEEEEEEEEEES-SSSCEEEEEEEEEEECHHHHHHHHHH-TTTTHHHHHHHHHHHHTTTT
T ss_pred             ecCCCCceeEEEEEEEEEC-CCCcEEEEEEEEEEecCCCCCHHHHH-HHHHHHHHHHHHHHHHhhcc
Confidence            3454  7889999999994 345799999999988 4555555566 77899999999999998864

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=95.34  E-value=0.03  Score=50.43  Aligned_cols=64  Identities=11%  Similarity=0.078  Sum_probs=43.7

Q ss_pred             CCCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHH----HHHHHhcchhHHHHHHHHHHHHh
Q 008769            2 VDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIF----LERIIRSDLPVNLQALACRAERS   65 (554)
Q Consensus         2 v~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~l----ve~~~~~dlp~nL~Ai~~~ae~~   65 (554)
                      ++|.|..++|.|++++.+++.+|.++|.++..|+-++.-.+    ......+-+-..|..+++.+|.-
T Consensus        80 ~~g~~~~~~g~~~F~~~~~~~gT~V~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~l~r~k~~~e~~  147 (155)
T 3ggn_A           80 LPGARIENSGEVLFRPAPGARGTEVVVRLTYRPPGGSAGAVIARMFNQEPSQQLRDDLMRFKREQELG  147 (155)
T ss_dssp             CTTCSSCEEEEEEEEECSSSSCEEEEEEEEEC----------------CHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCcceEEEEEEEECCCCCceEEEEEEEEECCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence            57889999999999998666789999999999976543322    23346677777788888888753

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*

Probab=94.06  E-value=0.047  Score=53.25  Aligned_cols=54  Identities=20%  Similarity=0.281  Sum_probs=48.8

Q ss_pred             eeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHhc
Q 008769           11 GKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSF   66 (554)
Q Consensus        11 G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~~   66 (554)
                      |.|.|++  +..+|.++|.+.+-|+-++|..++.....+.+|.-|..+++++++.+
T Consensus       195 g~~~l~~--~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~l~~L~k~v~~~~  248 (255)
T 2e3n_A          195 GNQEISR--DNILCKITYVANVNPGGWAPASVLRAVAKREYPKFLKRFTSYVQEKT  248 (255)
T ss_dssp             CCCCCCG--GGEEEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccc--CCCcEEEEEEEEeCCCCccCHHHHHHHHhccccHHHHHHHHHHHHhc
Confidence            7788888  44679999999999999999999999999999999999999998653

>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.02  E-value=1  Score=40.78  Aligned_cols=122  Identities=9%  Similarity=0.098  Sum_probs=71.1

Q ss_pred             EEEEEEEEcCCH-HHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEE
Q 008769          167 CVVASITVKAPV-SEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE  245 (554)
Q Consensus       167 ~V~asI~I~APp-e~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~  245 (554)
                      .|..++.|+||+ +.||++|++.+.+.+|+..-..     ..|+...+..-+ .+    ...+++ ++  ..++++|+|+
T Consensus         5 ~i~~e~~i~A~~~~~VW~~IStPegL~~Wfad~v~-----~~g~~~~F~w~~-~~----~~~~~v-~~--~~~~~~i~Fr   71 (136)
T 2lio_A            5 KIHLEYLLNATSKNILWSAISTPTGLEDWFADKVV-----SDDKTVTFCWGK-TE----QRQAGI-VA--IRAYSFIRFH   71 (136)
T ss_dssp             EEEEEEEECTTSCTHHHHGGGSHHHHTTTSSSEEE-----EETTEEEEESSS-SS----EEEEEE-EE--EETTTEEEEE
T ss_pred             cEEEEEEecCChHHHHHHHhCChhhhhcccCCCCc-----ccCceEEEEeCC-CC----cEeEEE-EE--EcCCCEEEEE
Confidence            578899999999 9999999999999999987421     234433332111 11    223332 22  2578999999


Q ss_pred             EEecCCceeEEEEEEEEcC-CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          246 QVEGDFDSFQGKWLFEQLG-SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       246 ~veGdfr~f~G~W~Leplg-dG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      -..-.-....-..+++..+ .++|.|+.. .|.      -+.. .+. +...=...|..||+.++.
T Consensus        72 W~~~~~~~~~~e~~l~~~~~t~~~~L~vt-dFa------~~~~-~e~-~~~gW~~~l~~Lk~~lg~  128 (136)
T 2lio_A           72 WLDDENERDYFEIKMSYNELTGDYVLEIT-DFS------EADE-ADD-LKELWDSQVSKLRRTCGF  128 (136)
T ss_dssp             ESSSSSSSCEEEEEEEECTTTSCEEEEEE-EEE------CHHH-HHH-HHHHHHHHHHHHHHHTSC
T ss_pred             ccCCCCCceEEEEEEEecCCCCcEEEEEe-cCC------Cccc-hhH-HHhhHHHHHHHHHHHhhh
Confidence            7653222222233344432 135777665 332      1222 222 556666777777776544

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=92.94  E-value=0.22  Score=47.55  Aligned_cols=57  Identities=11%  Similarity=0.066  Sum_probs=51.5

Q ss_pred             eeeeEEeeecCC-CCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769            9 FEGKWSIKSGTR-SSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS   65 (554)
Q Consensus         9 f~G~W~l~~~~~-~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~   65 (554)
                      +.|.|.|+|.++ ...|.++|.+.+-|+-++|..|+...+.+-++.-|..+|+.++++
T Consensus       169 ~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~l~n~~~~~~~~~~~~~Lr~~~~~~  226 (229)
T 1em2_A          169 GPGGMIVLKSASNPRVCTFVWILNTDLKGRLPRYLIHQSLAATMFEFAFHLRQRISEL  226 (229)
T ss_dssp             CSEEEEEEECSSCTTCEEEEEEECEECCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccEEEEEecCCCCCcEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567899999764 467899999999999999999999999999999999999999865

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=92.46  E-value=0.27  Score=46.89  Aligned_cols=57  Identities=7%  Similarity=-0.060  Sum_probs=51.3

Q ss_pred             eeeeEEeeecCC-CCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769            9 FEGKWSIKSGTR-SSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS   65 (554)
Q Consensus         9 f~G~W~l~~~~~-~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~   65 (554)
                      +.|.|.|+|.++ ...|.++|...+-|+-++|..++...+.+-++.-+..+|+.++++
T Consensus       172 ~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr~~~~~~  229 (231)
T 2r55_A          172 HPCGCFCEPLPGEPTKTNLVTFFHTDLSGYLPQNVVDSFFPRSMTRFYANLQKAVKQF  229 (231)
T ss_dssp             CSEEEEEEECC--CCCEEEEEEECEECCSSCCHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             EeeEEEEEEeCCCCCcEEEEEEEEeCCCCCccHHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence            568899999864 467899999999999999999999999999999999999999865

>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A

Probab=92.39  E-value=0.31  Score=44.50  Aligned_cols=59  Identities=17%  Similarity=0.133  Sum_probs=45.8

Q ss_pred             CcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHH-HHHHHhcchhHHHHHHHHHHHHh
Q 008769            6 FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIF-LERIIRSDLPVNLQALACRAERS   65 (554)
Q Consensus         6 F~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~l-ve~~~~~dlp~nL~Ai~~~ae~~   65 (554)
                      |..|.+.|+|++.+ +.+|++++...+.+....|..+ ....++.|++..|.+|++.||++
T Consensus        96 ~~~~~~~h~l~p~~-~ggTrvt~~~~~~G~~~~~~~~~~~~~i~~~~~~~l~~LK~~aE~~  155 (155)
T 3ijt_A           96 FGNVLFEHEILENP-DGTISLRHSVSLTDSDTTEEALAFLKQIFADVPESVGKLKQILETV  155 (155)
T ss_dssp             TEEEEEEEEEEECT-TSCEEEEEEEEESCCSCCHHHHHHHHHHHTTHHHHHHHHHHHHTC-
T ss_pred             CeEEEEEEEEEEcC-CCcEEEEEEEEEECCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            44678889999874 4579999999998776323322 45799999999999999999863

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=92.05  E-value=0.33  Score=43.14  Aligned_cols=59  Identities=12%  Similarity=0.103  Sum_probs=45.6

Q ss_pred             CCcceeeeEEeeecCCCCceEEEEEEEeecCC---CCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769            5 DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRL---NFPAIFLERIIRSDLPVNLQALACRAER   64 (554)
Q Consensus         5 DF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~---~~P~~lve~~~~~dlp~nL~Ai~~~ae~   64 (554)
                      .|..+.|.|+|++.. +.+|+|+|++++.+.-   .++..|+....++-+...+.++++.+|+
T Consensus        87 ~~~~~~~~~~l~~~~-~~gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e~  148 (162)
T 2pcs_A           87 GFVNAEGVIDLTPIN-DECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAK  148 (162)
T ss_dssp             EEEEEEEEEEEEESS-SSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccEEEEEEEEEEecC-CCcEEEEEEEEEEECCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            456789999999954 3579999977776532   2466788888888889999999998885

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=91.99  E-value=0.15  Score=48.58  Aligned_cols=56  Identities=14%  Similarity=0.079  Sum_probs=50.7

Q ss_pred             ceeeeEEeeecCCC-CceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHH
Q 008769            8 KFEGKWSIKSGTRS-STTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE   63 (554)
Q Consensus         8 ~f~G~W~l~~~~~~-~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae   63 (554)
                      .+.|.|.|+|.+++ .+|.++|.+.+-|+-++|..++...+.+-++.-|.++|++++
T Consensus       157 ~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr~~~~  213 (221)
T 3p0l_A          157 HGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRKRLE  213 (221)
T ss_dssp             ECSCEEEEEEETTEEEEEEEEEEECEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccceEEEEEECCCCCCcEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35689999998754 378999999999999999999999999999999999999986

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=91.62  E-value=0.19  Score=48.09  Aligned_cols=56  Identities=16%  Similarity=0.075  Sum_probs=49.3

Q ss_pred             eeeeEEeeecCCC-CceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769            9 FEGKWSIKSGTRS-STTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER   64 (554)
Q Consensus         9 f~G~W~l~~~~~~-~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~   64 (554)
                      +.|.|.|+|.+++ ..|.|+|.+.+-|+-++|..++...+.+-+..-+..+|+.+++
T Consensus       167 ~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr~~~~~  223 (224)
T 1jss_A          167 HPCGWFCVPLKDSPSQSLLTGYIQTDLRGMIPQSAVDTAMASTLANFYSDLRKGLRK  223 (224)
T ss_dssp             CSEEEEEEEETTEEEEEEEEEEECEECCSCCCHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             cccEEEEEEcCCCCCceEEEEEEEeCCCCCccHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence            4688999998654 5799999999999999999999999999999999999988753

>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7

Probab=90.58  E-value=11  Score=35.06  Aligned_cols=124  Identities=12%  Similarity=0.154  Sum_probs=75.0

Q ss_pred             HHHHHHHHhC-cCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEEe-cCCceeE
Q 008769          178 VSEVWNVMTA-YETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVE-GDFDSFQ  255 (554)
Q Consensus       178 pe~VWaVLTD-yE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~ve-Gdfr~f~  255 (554)
                      .++||+-|.- .++=-.|+|.|.+|+|+++.++.+. +..-+.+.   ..+.++    +..++.++.|.+.. |....-.
T Consensus        22 r~QlW~GL~~kar~p~~Fvp~i~~c~Vlse~~~~~~-R~l~fg~~---~i~e~v----tl~~~~~v~f~~~~t~~~~gs~   93 (157)
T 2ffs_A           22 RLQLWEGLVCRAREPQYFVVGLERFEILVDDGDRLH-RRLYLPGL---VVEDEV----VLKAPDSAHYSIKPSAEVAGGS   93 (157)
T ss_dssp             HHHHHHHHHHHHHCGGGTCTTCCEEEEEEECSSEEE-EEEEETTE---EEEEEE----EEETTTEEEEEECCCSSSBEEE
T ss_pred             HHHHHHHHHHHhcChhhcccccCeEEEEecCCCeEE-EEEEECCC---ccceEE----EEcCCcEEEEEcccccCCCCce
Confidence            4899986654 4555569999999999998876432 22222332   334443    34588999999866 2222212


Q ss_pred             EEEEEEEcCCCeEEEEEEEEEEeccCc----cchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          256 GKWLFEQLGSHHTLLKYSVESKMQKNS----LLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       256 G~W~LeplgdG~TrVtY~v~~eP~~gg----~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      =+-.++...+|.=.|+|..+.... +.    ---..+.+...+.....+++.||+.+..
T Consensus        94 ltn~Iee~~~g~L~lrF~ye~~~p-~~s~e~~~~~~~~~~ay~~ad~~Tv~~iRel~~~  151 (157)
T 2ffs_A           94 LDMTIEEPEPGSLFVRFAYCTRYL-QPLGDELPYDAFVKQAYIAMDVETIATIRDRFGA  151 (157)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECS-CC--CCCCCBHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             EEEEEeeCCCCcEEEEEEEEccCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            223455444454555665554432 11    0011356788888888999999998754

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=88.51  E-value=0.64  Score=40.63  Aligned_cols=56  Identities=7%  Similarity=0.121  Sum_probs=42.6

Q ss_pred             CCcceeeeEEeeecCCCCceEEEEEEEeec--CC-CCCHHHHHHHHhcchhHHHHHHHHHHH
Q 008769            5 DFKKFEGKWSIKSGTRSSTTTLSYEVNVIP--RL-NFPAIFLERIIRSDLPVNLQALACRAE   63 (554)
Q Consensus         5 DF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P--~~-~~P~~lve~~~~~dlp~nL~Ai~~~ae   63 (554)
                      +|+ +.+.|++++.+  .+|.|+|..++..  ++ .+...++....++.+-.-+.++++.+|
T Consensus        97 ~~~-~~~~~~l~~~~--~gT~v~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~lk~~~e  155 (157)
T 2ns9_A           97 TLD-FTLRFAVEPSG--GGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELG  155 (157)
T ss_dssp             EEE-EEEEEEEEEET--TEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cEE-EEEEEEEEeCC--CcEEEEEEEEEEECcCHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455 78999999965  5799999977543  32 245568888888888888888888776

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C

Probab=88.26  E-value=0.9  Score=43.09  Aligned_cols=65  Identities=23%  Similarity=0.121  Sum_probs=53.8

Q ss_pred             CCCC--CcceeeeEEeeecC-CCC-ceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHhc
Q 008769            2 VDGD--FKKFEGKWSIKSGT-RSS-TTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSF   66 (554)
Q Consensus         2 v~GD--F~~f~G~W~l~~~~-~~~-~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~~   66 (554)
                      ++||  ++-|.+..+|.|.. ++. +|.+.+..++.|+-+....-...-+..=+..||.+|++.+|++.
T Consensus       107 ieg~lp~~~y~ati~v~p~~~dG~~gt~V~Ws~~fd~~~g~~~e~~~~~~~~i~~~~L~~L~~~~e~~~  175 (183)
T 3rt2_A          107 VGGDHRLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVTERLQ  175 (183)
T ss_dssp             EEESCSCTTCEEEEEEEEEEETTEEEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCcceeEEEEEEEEEEecCCCCCCEEEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5675  77899999999976 555 89999999999887877766666777778899999999999873

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2

Probab=84.82  E-value=0.62  Score=45.32  Aligned_cols=56  Identities=7%  Similarity=0.062  Sum_probs=49.3

Q ss_pred             ceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769            8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS   65 (554)
Q Consensus         8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~   65 (554)
                      .+.|.|.|+|.+ ..+|.|+|.+.+-|+-++|..| ...+.+-++..|..||+.++.+
T Consensus       173 ~~~~g~~i~P~~-~~~t~vt~~~~~Dp~G~iP~~l-n~~~~~~~~~~l~~LR~~~~~~  228 (237)
T 2pso_A          173 VMDSQYLIEPCG-SGKSRLTHICRIDLKGHSPEWY-SKGFGHLCAAEVARIRNSFQPL  228 (237)
T ss_dssp             EEEEEEEEEECS-TTCEEEEEEEEECCSSSCTTTT-TTHHHHHHHHHHHHHHHTTSCC
T ss_pred             EeccEEEEEECC-CCCEEEEEEEEeCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence            467999999985 4568999999999999999999 8888888899999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	554
d2d4ra1	146	d.129.3.6 (A:2-147) Hypothetical protein TTHA0849	2e-17
d2d4ra1	146	d.129.3.6 (A:2-147) Hypothetical protein TTHA0849	5e-06
d2rera1	155	d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, c	2e-16
d2b79a1	137	d.129.3.9 (A:1-137) Hypothetical protein SMU440 {S	8e-07
d2pcsa1	147	d.129.3.10 (A:1-147) Hypothetical protein GKP20 {G	0.001
d3cnwa1	138	d.129.3.8 (A:3-140) Uncharacterized protein XoxI {	0.002
d2qpva1	133	d.129.3.8 (A:1-133) Uncharacterized protein Atu153	0.002

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} Length = 146

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

 Score = 77.2 bits (189), Expect = 2e-17
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 227
           V A   + AP   V+ +    E L   +  +   ++++RE  + R           +   
Sbjct: 3   VRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGKKVRWL 62

Query: 228 ARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSL--LS 285
                D          F   EGDFD ++G W+F   G   T +  ++  ++       L 
Sbjct: 63  EEEEWDDENLR---NRFFSPEGDFDRYEGTWVFLPEG-EGTRVVLTLTYELTIPIFGGLL 118

Query: 286 EAIMEEVIYEDLPSNLCAIRDYVEK 310
             ++++++ E++ S L  + + V  
Sbjct: 119 RKLVQKLMQENVESLLKGLEERVLA 143

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} Length = 146

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

 Score = 44.5 bits (104), Expect = 5e-06
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 1   MVDGDFKKFEGKWSIKSGTRSS--TTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQAL 58
             +GDF ++EG W        +    TL+YE+ +          ++++++ ++   L+ L
Sbjct: 78  SPEGDFDRYEGTWVFLPEGEGTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGL 137

Query: 59  ACRAE 63
             R  
Sbjct: 138 EERVL 142

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]} Length = 155

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

 Score = 74.2 bits (181), Expect = 2e-16
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 1/148 (0%)

Query: 171 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARV 230
           SI V AP   VW+V    E  PE+    A ++IL ++ +      +        V     
Sbjct: 8   SIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGRVWEWVS 67

Query: 231 VMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIME 290
                +      +     G F      W +  +      +++  E  M+  +    A M 
Sbjct: 68  HRVPDKGSRTVRAHRVETGPFAYMNLHWTYRAVAGGTE-MRWVQEFDMKPGAPFDNAHMT 126

Query: 291 EVIYEDLPSNLCAIRDYVEKREGDNSLA 318
             +     +N+  I+  +E R  +    
Sbjct: 127 AHLNTTTRANMERIKKIIEDRHREGQRT 154

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]} Length = 137

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

 Score = 46.3 bits (108), Expect = 8e-07
 Identities = 16/139 (11%), Positives = 42/139 (30%), Gaps = 8/139 (5%)

Query: 171 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARV 230
            + V     + W   +          +         + +       G KG + M     +
Sbjct: 6   ELAVNTKKEDAWTYYSQVNQWFVWEGD-------LEQISLEGEFTTGQKGKMKMEDMPEL 58

Query: 231 VMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIME 290
              + E  E +   +     F +   +    +       L++SV      ++        
Sbjct: 59  AFTLVEVRENQCFSDLTATPFGNVLFEHEILENPDGTISLRHSVSLTD-SDTTEEALAFL 117

Query: 291 EVIYEDLPSNLCAIRDYVE 309
           + I+ D+P ++  ++  +E
Sbjct: 118 KQIFADVPESVGKLKQILE 136

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]} Length = 147

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 16/108 (14%), Positives = 36/108 (33%)

Query: 171 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARV 230
           SI +K  V EVW+ +     L + +      +++  +  K  +                V
Sbjct: 6   SIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDKYKADLQIGIAAVKGKYDAIIEV 65

Query: 231 VMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKM 278
                  H + +   +    F + +G      +    T L Y+  +++
Sbjct: 66  TDIKPPYHYKLLVNGEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEV 113

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Length = 138

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 17/132 (12%), Positives = 48/132 (36%), Gaps = 11/132 (8%)

Query: 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 227
              S+ +     +VW ++  + +LP+ +P +  SK+      +     +         + 
Sbjct: 4   TTTSMEIFGSPEQVWQLIGGFNSLPDWLPYIPSSKLTEGGRVRHLANPD------GDTII 57

Query: 228 ARVVMDICEQHEQEISFEQVEGDF--DSFQGKWLFEQLGS-HHTLLKYSVESKMQKNSLL 284
            R+ +      E+  ++  +   F   ++      ++    + +L+++S      + S  
Sbjct: 58  ERLEV--FNDKERYYTYSIMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPVEVSDE 115

Query: 285 SEAIMEEVIYED 296
               +   IY D
Sbjct: 116 EAINLFHGIYSD 127

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]} Length = 133

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 13/98 (13%), Positives = 27/98 (27%), Gaps = 14/98 (14%)

Query: 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 227
            +  ++V+ P +EV++       +P     LA       E+   +    G          
Sbjct: 7   RIIHLSVEKPWAEVYDFAANPGNMPRWAAGLAGGLEADGEDWIAKGGPLG---------- 56

Query: 228 ARVVMDICEQHEQE-ISFEQVEGDFDSFQGKWLFEQLG 264
             V ++    +E   I         D  +         
Sbjct: 57  -EVRVNFAPHNEFGVIDHVVTLP--DGLKVYNALRVTP 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	554
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	99.86
d1t17a_	148	Hypothetical protein CC1736 {Caulobacter crescentu	99.78
d2rera1	155	Multifunctional enzyme TcmN, cyclase/aromatase dom	99.76
d2b79a1	137	Hypothetical protein SMU440 {Streptococcus mutans	99.62
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	99.6
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	99.57
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	99.43
d1jssa_	199	Cholesterol-regulated Start protein 4 (Stard4). {M	99.35
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	99.3
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	99.13
d2qpva1	133	Uncharacterized protein Atu1531 {Agrobacterium tum	98.95
d2psoa1	197	Star-related lipid transfer protein 13 {Human (Hom	98.87
d1xuva_	163	Hypothetical protein MM0500 {Methanosarcina mazei	98.78
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	98.57
d2il5a1	164	Hypothetical protein SA2116 {Staphylococcus aureus	98.49
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	98.37
d1xfsa_	165	Hypothetical protein NE0264 {Nitrosomonas europaea	98.35
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	98.27
d1fm4a_	159	Major tree pollen allergen {European white birch (	98.27
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	98.27
d2rera1	155	Multifunctional enzyme TcmN, cyclase/aromatase dom	98.25
d1z94a1	143	Hypothetical protein CV1439 {Chromobacterium viola	98.23
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	98.22
d1xn5a_	138	Hypothetical protein BH1534 {Bacillus halodurans [	98.05
d1xn6a_	143	Hypothetical protein BC4709 {Bacillus cereus [TaxI	98.02
d1zxfa1	155	Calicheamicin gene cluster protein CalC {Micromono	97.98
d2nn5a1	160	Hypothetical protein EF2215 {Enterococcus faecalis	97.92
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	97.91
d3elia1	143	Uncharacterized protein SPO3351 {Silicibacter pome	97.69
d2k5ga1	183	Uncharacterized protein BPP1335 {Bordetella parape	97.43
d1t17a_	148	Hypothetical protein CC1736 {Caulobacter crescentu	97.02
d1x53a1	132	Activator of 90 kda heat shock protein ATPase homo	96.53
d1vjha_	120	Hypothetical protein At1G24000 {Thale cress (Arabi	96.49
d2b79a1	137	Hypothetical protein SMU440 {Streptococcus mutans	96.49
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	95.81
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	94.96
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	94.13
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	92.45
d1jssa_	199	Cholesterol-regulated Start protein 4 (Stard4). {M	90.7
d2ffsa1	151	Hypothetical protein PA1206 {Pseudomonas aeruginos	87.11

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=2.4e-20  Score=164.18  Aligned_cols=141  Identities=18%  Similarity=0.246  Sum_probs=115.7

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEE
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ  246 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~  246 (554)
                      +|+++++|+|||++||++|+||++||+|+|+|.+++++++.++...+..........+.++.+++.   ..+++.|.|.+
T Consensus         2 ~v~~~~~I~ap~~~V~~~l~D~~~~~~w~p~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~   78 (146)
T d2d4ra1           2 EVRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGKKVRWLEEEEW---DDENLRNRFFS   78 (146)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEE---ETTTTEEEEEE
T ss_pred             EEEEEEEECCCHHHHHHHHHChhhHHhhccccEEEEEEEecCCcceEEEEEEeeeeeEEEEEEEEE---cCCCCEEEEEE
Confidence            489999999999999999999999999999999999999988876554432222223455554432   35678999999


Q ss_pred             EecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccC--ccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          247 VEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKN--SLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       247 veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~g--g~LP~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      ..|+|..+.|.|+|++.++ +|+|+|.+++++..+  ..++..++++.+++.+..+|++|+++++..
T Consensus        79 ~~g~~~~~~g~w~l~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  144 (146)
T d2d4ra1          79 PEGDFDRYEGTWVFLPEGE-GTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAA  144 (146)
T ss_dssp             EEESCSEEEEEEEEEECSS-SEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCcceEEEEEEEEecCC-ceEEEEEEEEEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999886 599999999986422  235778899999999999999999999864

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein CC1736
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.78  E-value=3.4e-18  Score=153.12  Aligned_cols=141  Identities=14%  Similarity=0.225  Sum_probs=113.0

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC--CEE--EEEE-EeccceeEEEEEEEEEEEEeecCCC
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN--NKV--RILQ-EGCKGLLYMVLHARVVMDICEQHEQ  240 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g--~~v--rv~q-~g~~gil~~~~~~rvvLdv~E~~~r  240 (554)
                      +++..+.+|++||++||+++.|+|+||+|+|+|.+++|+++.+  +..  .... .+..+. ...+...+.   ...+..
T Consensus         2 ~~~~~~~vi~~~~e~vf~vV~Dve~Yp~FlP~c~~~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~   77 (148)
T d1t17a_           2 HRHVVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFL-REKFATRVR---RDKDAR   77 (148)
T ss_dssp             CEEEEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTSS-CCEEEEEEE---EETTTC
T ss_pred             CcceEEEEeCCCHHHHHHHHHHHHhhhhhccccCccEEEecccccccceeeEEEEEEeeee-EEEEEEEee---ecCCce
Confidence            4456788999999999999999999999999999999998743  322  2222 233332 234444332   224566


Q ss_pred             eEEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 008769          241 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  313 (554)
Q Consensus       241 rIsf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~  313 (554)
                      .+.+.+..|+|+.+.|.|+|++.++ +|+|+|.++++++  .+++..+++.++.+.+..++++|++||++.|+
T Consensus        78 ~~~~~~~~g~f~~l~~~W~f~~~~~-~T~V~~~l~fe~~--~~l~~~~~~~~~~~~~~~~i~aF~~Ra~~lyg  147 (148)
T d1t17a_          78 SIDVSLLYGPFKRLNNGWRFMPEGD-ATRVEFVIEFAFK--SALLDAMLAANVDRAAGKLIACFEARAQQLHG  147 (148)
T ss_dssp             EEEEEESSTTSSCEEEEEEEEEETT-EEEEEEEEEECCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEeccCchhhhcccceeeccCCC-ceEEEEEEEEEEC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            7888888899999999999999876 6999999999984  56889999999999999999999999999987

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

Probab=99.76  E-value=5.5e-18  Score=149.66  Aligned_cols=145  Identities=21%  Similarity=0.350  Sum_probs=111.7

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEE---eccceeEEEEEEEEEEEEeecCCCeEE
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE---GCKGLLYMVLHARVVMDICEQHEQEIS  243 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~---g~~gil~~~~~~rvvLdv~E~~~rrIs  243 (554)
                      +++.+|+|+|||++||++|+|+++||+|+|+|.+++++.+.++++.....   +.... ...+...++   .+.+...+.
T Consensus         4 ~~e~si~I~Ap~~~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~   79 (155)
T d2rera1           4 RTDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGR-VWEWVSHRV---PDKGSRTVR   79 (155)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEECCSSCEEEEEEECCCTTSC-CCEEEEEEE---EEGGGTEEE
T ss_pred             EEEEEEEECCCHHHHHHHHHChhhHhhhhhhceEEEEeecCCCceEEEEEEEEeeeee-eEEEEEEEE---EcCCccEEE
Confidence            57899999999999999999999999999999999999887665433221   12221 123333322   223456777


Q ss_pred             EEEEe-cCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCC
Q 008769          244 FEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNS  316 (554)
Q Consensus       244 f~~ve-Gdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~~~~  316 (554)
                      |.... +++..+.|.|+|++.++ +|+|++..++++.++.+++..++.+.++..+..+|++||+++|++..+.+
T Consensus        80 ~~~~~~~~~~~~~~~w~~~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~~E~~~~~~~  152 (155)
T d2rera1          80 AHRVETGPFAYMNLHWTYRAVAG-GTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDRHREGQ  152 (155)
T ss_dssp             EEESSCTTEEEEEEEEEEEEETT-EEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEeecCccceeeEEEEEEeecCC-ccEEEEEEEEEECCCccccHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc
Confidence            77654 67778999999999875 69998888887655566777788999999999999999999998876644

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

Probab=99.62  E-value=5.1e-15  Score=128.22  Aligned_cols=134  Identities=11%  Similarity=0.097  Sum_probs=103.7

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEec--CCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEE
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRE--NNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  244 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~--g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf  244 (554)
                      +++.+|.|+||++.||++++|+++||+|+|.+..++.....  |....+...+...   +.+  ++   ....+++++.|
T Consensus         2 ~~s~si~I~Ap~e~Vw~~~~d~~~~~~W~~~~~~~~~~~~~~~G~~~~~~~~~~~~---~~~--~v---~~~~p~~~~~~   73 (137)
T d2b79a1           2 KFSFELAVNTKKEDAWTYYSQVNQWFVWEGDLEQISLEGEFTTGQKGKMKMEDMPE---LAF--TL---VEVRENQCFSD   73 (137)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEESSSSSTTCEEEEEETTSCC---EEE--EE---CCCBTTTEEEE
T ss_pred             ceEEEEEEcCCHHHHHHHHhhhhhCccccCcccceeecccccceEEEEEEEcCCcc---eee--ee---ecccCCcEEEE
Confidence            37899999999999999999999999999999999976542  2333443322221   222  21   12246789999


Q ss_pred             EEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          245 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       245 ~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      .. .+++....+.|.+++.++|+|+|+|++.+.+. ..++...++...+..+++..|++||+.+|.
T Consensus        74 ~~-~~~~~~~~~~~~~~~~~~g~t~vt~~~~~~g~-~~~~~~~~~~~~v~~~~~~~l~~LK~~~Ea  137 (137)
T d2b79a1          74 LT-ATPFGNVLFEHEILENPDGTISLRHSVSLTDS-DTTEEALAFLKQIFADVPESVGKLKQILET  137 (137)
T ss_dssp             EE-EETTEEEEEEEEEEECTTSCEEEEEEEEECSC-SCCTTHHHHHHHHHTTHHHHHHHHHHHHTC
T ss_pred             Ee-cccceeeeeEEEEccCCCCcEEEEEEEecccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            76 56677889999999999989999999999743 345667788899999999999999999984

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=99.60  E-value=3e-14  Score=125.80  Aligned_cols=133  Identities=15%  Similarity=0.285  Sum_probs=100.3

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEE
Q 008769          165 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  244 (554)
Q Consensus       165 ~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf  244 (554)
                      |-+++.+|.|+|||++||++|+||+++|+|+|.+.+++....  +.++... ...+.   .+..++  ...+.+++++.|
T Consensus         1 m~~~~~si~I~A~pe~VW~~v~df~~~~~W~p~v~~~~~~~~--G~~R~~~-~~~g~---~~~E~l--~~~d~~~~~~~y   72 (138)
T d3cnwa1           1 MAHTTTSMEIFGSPEQVWQLIGGFNSLPDWLPYIPSSKLTEG--GRVRHLA-NPDGD---TIIERL--EVFNDKERYYTY   72 (138)
T ss_dssp             CEEEEEEEEESSCHHHHHHHHCCTTCGGGTCTTCSEEEEEGG--GTEEEEE-CTTCC---EEEEEE--EEEETTTTEEEE
T ss_pred             CCcEEEEEEEeCCHHHHHHHHhCccchHHHhcccceeEeecC--ceeEEEE-ecCCc---eeEEEE--EEEeCCCcEEEE
Confidence            346899999999999999999999999999999999987632  3233322 22221   123332  223356789999


Q ss_pred             EEEecCC--ceeEEEEEEEEcCCC-eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 008769          245 EQVEGDF--DSFQGKWLFEQLGSH-HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  308 (554)
Q Consensus       245 ~~veGdf--r~f~G~W~LeplgdG-~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rA  308 (554)
                      ++++|++  ..+.|+|+|+|.++| +|+|+|...|+|.  + +++..+...++..+...|++|+++.
T Consensus        73 ~~~~~~~p~~~~~~~~~l~p~~~g~~t~v~w~~~f~p~--~-~~~~~~~~~~~~~~~~~l~~L~~~f  136 (138)
T d3cnwa1          73 SIMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPV--E-VSDEEAINLFHGIYSDGLKALQQAF  136 (138)
T ss_dssp             EEEECSSSEEEEEEEEEEEECSSTTCEEEEEEEEEEES--S-SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCcceeeEEEEEEEECCCCCeEEEEEEEEEecC--C-CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999876  588999999998764 6999999999984  2 3444556778888889999998875

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.57  E-value=9.2e-14  Score=119.14  Aligned_cols=139  Identities=9%  Similarity=0.127  Sum_probs=92.8

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEE-
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE-  245 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~-  245 (554)
                      +++.+|+|+|||++||++|+|+++||+|+|+|+++++.....+.. ....  .+.....+......... .......+. 
T Consensus         4 k~e~si~I~ap~e~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~   79 (147)
T d2ns9a1           4 RYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGSFTIE-LRLS--LGPLRGDARVRASFEDL-EKPSKATVKG   79 (147)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEEEETTEEEEE-EEEE--SSSSEEEEEEEEEEEEE-ETTTEEEEEE
T ss_pred             EEEEEEEEcCCHHHHHHHHhCHhhhhhcccchhheeeccccccee-EEEE--EEEEeeEeeeeeeeeee-cCCcceeEEE
Confidence            589999999999999999999999999999999988743322211 1111  11111222222222222 233333332 


Q ss_pred             -EEec-CCceeEEEEEEEEcCCCeEEEEEEEEEEecc-CccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          246 -QVEG-DFDSFQGKWLFEQLGSHHTLLKYSVESKMQK-NSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       246 -~veG-dfr~f~G~W~LeplgdG~TrVtY~v~~eP~~-gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                       ...+ ....+.+.|+|++.++ +|+|+|..++.+.+ ...++..++.+.+++.+...|++|+++++.
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~~-gt~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~~~l~~lk~~~~~  146 (147)
T d2ns9a1          80 SGRGAGSTLDFTLRFAVEPSGG-GSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGE  146 (147)
T ss_dssp             EEECSSEEEEEEEEEEEEEETT-EEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             eeeccccceeeEEEEEEEecCC-CcEEEEEEEEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             2222 2347788999999765 69999999998741 123456688999999999999999998764

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=99.43  E-value=6.4e-13  Score=115.83  Aligned_cols=139  Identities=13%  Similarity=0.137  Sum_probs=90.8

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEE--E
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF--E  245 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf--~  245 (554)
                      ++.++.|+||+++||++|+|+++||+|+|+|.+++++........+. .....+ ...+..+..+.... .+.....  .
T Consensus         3 ~s~~~~i~~~~e~v~~~l~D~~~~~~~~Pg~~~~~~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~-~~~~~~~~~~   79 (147)
T d2pcsa1           3 GNGSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDKYKADLQ-IGIAAV-KGKYDAIIEVTDIK-PPYHYKLLVN   79 (147)
T ss_dssp             EEEEEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETTEEEEEEE-ECCGGG-CEEEEEEEEEEEEE-TTTEEEEEEE
T ss_pred             CCceEEeCCCHHHHHHHHcCHHHHHhhCcchhhceecCCCEEEEEEE-Eeecce-eeeeEEEEEEeccC-cccceeEeec
Confidence            57899999999999999999999999999999999886422222222 222222 23444443332222 2333222  2


Q ss_pred             EEe-cCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 008769          246 QVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  312 (554)
Q Consensus       246 ~ve-Gdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~  312 (554)
                      ... +.+..+.+.|.+.+.++++|+|+|.+++++.  ++++. ++.+++...+..+++++.++++++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~--g~l~~-l~~~li~~~~~~~~~~f~~~~~~~l  144 (147)
T d2pcsa1          80 GEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEVG--GKVAA-IGQRMLGGVAKLLISDFFKKIQKEI  144 (147)
T ss_dssp             EEETTEEEEEEEEEEEEESSSSEEEEEEEEEEEEE--SGGGG-GCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhcceeEEeeecccCCcEEEEEEEEEEEC--cHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            222 3344677888888888889999999999974  34433 4556666666667777777666654

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=1.6e-11  Score=113.58  Aligned_cols=164  Identities=10%  Similarity=0.055  Sum_probs=115.6

Q ss_pred             CCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEec-
Q 008769          129 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRE-  207 (554)
Q Consensus       129 ~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~-  207 (554)
                      ..+|+..++.+|+       +||.|..+     +-+...++++.+|++|++.|+++|.|.+.+++|.|.|.++++++.- 
T Consensus        19 ~~~W~~~~~~~~v-------~v~~~~~~-----~~~~~~~r~~~~i~~~~~~v~~~l~d~~~~~~Wd~~~~~~~~le~~~   86 (199)
T d1jssa_          19 EDEWRVAKKAKDV-------TVWRKPSE-----EFNGYLYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFE   86 (199)
T ss_dssp             GGGCEEEEEETTE-------EEEEEECS-----SSSSEEEEEEEEESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECS
T ss_pred             cCCCeEEEecCCE-------EEEEEEcC-----CCCcEEEEEEEEeCCCHHHHHHHHhChhhhhhcccchheEEEEEEcC
Confidence            3489999999999       99999433     2245679999999999999999999999999999999999999884 


Q ss_pred             CCEEEEEE-Ee-cc-cee-EEEEEEEEEEEEeecCCCeEEEEE-------EecCCc--eeEEEEEEEEcCCC--eEEEEE
Q 008769          208 NNKVRILQ-EG-CK-GLL-YMVLHARVVMDICEQHEQEISFEQ-------VEGDFD--SFQGKWLFEQLGSH--HTLLKY  272 (554)
Q Consensus       208 g~~vrv~q-~g-~~-gil-~~~~~~rvvLdv~E~~~rrIsf~~-------veGdfr--~f~G~W~LeplgdG--~TrVtY  272 (554)
                      .+...+++ .. .. .++ ..-|.....  .....+..+....       .+|.++  .+.+.|.|+|.+++  +|+|+|
T Consensus        87 ~~~~i~~~~~~~~~~~~v~~RD~v~~~~--~~~~~~~~~~~~~~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~~~t~vt~  164 (199)
T d1jssa_          87 ENCCVMRYTTAGQLLNIISPREFVDFSY--TVGYEEGLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTG  164 (199)
T ss_dssp             TTEEEEEEEECCBTTTTBCCEEEEEEEE--EEEETTEEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEE
T ss_pred             CCcEEEEEEEcccCCCCcCCcEEEEEEE--EEEcCCcEEEEEEecCCCCCCCceEEEEEeeeeEEEEEcCCCCCcEEEEE
Confidence            34333332 21 11 111 011111000  0111222221111       112222  45689999998765  799999


Q ss_pred             EEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 008769          273 SVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  308 (554)
Q Consensus       273 ~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rA  308 (554)
                      .+.++|+  |.+|.++++.++...+...+++||+++
T Consensus       165 ~~~~Dp~--G~iP~~lvn~~~~~~~~~~~~~Lr~~l  198 (199)
T d1jssa_         165 YIQTDLR--GMIPQSAVDTAMASTLANFYSDLRKGL  198 (199)
T ss_dssp             EECEECC--SCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEcCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999994  679999999999999999999999874

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.3e-10  Score=107.56  Aligned_cols=167  Identities=5%  Similarity=-0.070  Sum_probs=115.4

Q ss_pred             CCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEc-CCHHHHHHHHhCcCcccccCcCCcEEEEEEec
Q 008769          129 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSRE  207 (554)
Q Consensus       129 ~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~-APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~  207 (554)
                      ..+|+..++.+|+       .||.+..+     +.+.+.++++.+|+ +|++++++++.|.+.+++|.|.|.++.... +
T Consensus        20 ~~~W~~~~~~~gv-------~vy~~~~~-----~~~~~~~k~~~~i~~~~~~~~~~~l~d~~~~~~Wd~~~~~~~~~~-~   86 (203)
T d1ln1a_          20 GADWQLLVETSGI-------SIYRLLDK-----KTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQE-C   86 (203)
T ss_dssp             TTTCEEEEEETTE-------EEEEEEET-----TTTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEE-E
T ss_pred             CCCCEEEEecCCE-------EEEEEecC-----CCCcEEEEEEEEEcCCCHHHHHHHHcCHhHhhhhcccceEEEEEc-c
Confidence            4599999999999       99999433     35577899999995 999999999999999999999998753332 4


Q ss_pred             CCEEEEEEEeccc--eeEEEEEEEEEEEEeecCCCeEE---EEEEe--------cCCc--eeEEEEEEEEcCCCeEEEEE
Q 008769          208 NNKVRILQEGCKG--LLYMVLHARVVMDICEQHEQEIS---FEQVE--------GDFD--SFQGKWLFEQLGSHHTLLKY  272 (554)
Q Consensus       208 g~~vrv~q~g~~g--il~~~~~~rvvLdv~E~~~rrIs---f~~ve--------Gdfr--~f~G~W~LeplgdG~TrVtY  272 (554)
                      ++...+++.-...  +-..-+............+..+.   ...+.        |..+  .+.+.|.|++.++++|+|+|
T Consensus        87 ~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~~~~~t~v~~  166 (203)
T d1ln1a_          87 NGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFM  166 (203)
T ss_dssp             TTEEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEE
T ss_pred             CCcEEEEEEcccccccCCceEEEEEEEEEccCCCCeEEEEEeecccCCcCcccCCccccceeeEEEEEEecCCCcEEEEE
Confidence            4433333321111  10011111000011111121111   11111        2222  56789999999988999999


Q ss_pred             EEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          273 SVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       273 ~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      ....+|+  |.+|.++++.+.+..++.++++|++.+.+
T Consensus       167 ~~~~Dp~--G~iP~~lvn~~~~~~~~~~~~~l~k~~~~  202 (203)
T d1ln1a_         167 YYFDNPG--GQIPSWLINWAAKNGVPNFLKDMARACQN  202 (203)
T ss_dssp             EEEECCS--SCCCHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred             EEEcCCC--CcCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999994  67999999999999999999999998865

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=9.8e-10  Score=102.33  Aligned_cols=167  Identities=11%  Similarity=0.077  Sum_probs=113.9

Q ss_pred             CCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHH-HHhCcCcccccCcCCcEEEEEEe-c
Q 008769          130 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWN-VMTAYETLPEIVPNLAISKILSR-E  207 (554)
Q Consensus       130 ~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWa-VLTDyE~yPewiP~V~sSrVL~r-~  207 (554)
                      ++|+..+...+.      +.+|.+      ...+..+.++++.+|++|++.|++ ++.|.+.+++|.|.|.++++++. +
T Consensus        28 ~~W~~~~~~~~~------~~~~~~------~~~~~~~~~k~~~~i~~~~~~v~~~~~~d~e~~~~Wd~~~~~~~ile~~~   95 (214)
T d1em2a_          28 ENWKFEKNNEYG------DTVYTI------EVPFHGKTFILKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVE   95 (214)
T ss_dssp             GGCEEEEECTTC------CEEEEE------EETTTEEEEEEEEEESSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEET
T ss_pred             CCCeEEEEcCCE------EEEEEE------ecCCCcEEEEEEEEEeCCHHHHHHHHHhChHHHHHHHHHHhheEEEEEcC
Confidence            489988766555      155555      334455778999999999999985 78899999999999999999987 4


Q ss_pred             CCEEEEEEE-e--cccee-EEEEEEEEEEEEeecCCC-eEEEEEEe--------cCCc--eeEEEEEEEEcCC--CeEEE
Q 008769          208 NNKVRILQE-G--CKGLL-YMVLHARVVMDICEQHEQ-EISFEQVE--------GDFD--SFQGKWLFEQLGS--HHTLL  270 (554)
Q Consensus       208 g~~vrv~q~-g--~~gil-~~~~~~rvvLdv~E~~~r-rIsf~~ve--------Gdfr--~f~G~W~Leplgd--G~TrV  270 (554)
                      ++...++.. .  ...++ ..-|......  ...++. .+....+.        |..+  .+.+.|.|++.++  +.|+|
T Consensus        96 ~~~~i~~~~~~~~~~~~vs~RD~v~~~~~--~~~~~~~~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~v  173 (214)
T d1em2a_          96 DNTLISYDVSAGAAGGVVSPRDFVNVRRI--ERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTF  173 (214)
T ss_dssp             TTEEEEEEEECCBTTTTBCCEEEEEEEEE--EECSSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEE
T ss_pred             CCceEEEEEecccCCCCCCCcEEEEEEEE--EEcCCcEEEEEEeeccccccCCCCeEEEEEEeeeEEEEECCCCCCeEEE
Confidence            444333322 1  11111 1112111111  111222 22222222        2222  4568899999654  57999


Q ss_pred             EEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 008769          271 KYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  312 (554)
Q Consensus       271 tY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~  312 (554)
                      +|...++|+  |.+|.++++.++...+...+.+||+++.+..
T Consensus       174 t~~~~~Dp~--G~iP~~lvn~~~~~~~~~~~~~Lrk~~~k~~  213 (214)
T d1em2a_         174 VWILNTDLK--GRLPRYLIHQSLAATMFEFAFHLRQRISELG  213 (214)
T ss_dssp             EEEECEECC--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEeCCC--CCCCHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence            999999994  6799999999999999999999999998764

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.95  E-value=4.7e-09  Score=92.29  Aligned_cols=127  Identities=12%  Similarity=0.133  Sum_probs=84.7

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEE
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ  246 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~  246 (554)
                      .+..+|+|++|+++||++++|++++|+|+|++.+++.+  +++..+.. .+..+    .+..+++   .+.+++.|.|+.
T Consensus         6 ~~~~~i~I~~p~~~v~~~~~d~~~~p~w~~~l~~~~~~--~~~~~~~~-~~~~G----~~~~~i~---~~~p~~~i~w~~   75 (133)
T d2qpva1           6 SRIIHLSVEKPWAEVYDFAANPGNMPRWAAGLAGGLEA--DGEDWIAK-GGPLG----EVRVNFA---PHNEFGVIDHVV   75 (133)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCGGGGGGTCGGGTTCCEE--ETTEEEEE-CSSSC----EEEEEEC---CCCSSCBCCEEE
T ss_pred             EEEEEEEECCCHHHHHHHHhChhhcchhhhccceeEEe--cCCcEEEE-ecCCC----cEEEEEE---EcCCCCEEEEEE
Confidence            45678999999999999999999999999999988765  34443322 12222    2333322   234678999998


Q ss_pred             EecCCceeEEEEEEEEcCC-CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          247 VEGDFDSFQGKWLFEQLGS-HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       247 veGdfr~f~G~W~Leplgd-G~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      ..|+-  ..|.+.|++.++ ++|.+.+... .|.  + +....+.. ..+.+...|..||+.+|.
T Consensus        76 ~~~~~--~~g~v~fr~~~~g~gt~v~~~~~-~pp--g-~~~~~~~~-~~~~v~~dL~rlK~l~Ea  133 (133)
T d2qpva1          76 TLPDG--LKVYNALRVTPNGSGTEVSFTLL-RLE--G-MTDEDFEQ-DASAITADLEMLKSLLEA  133 (133)
T ss_dssp             ECTTS--CEEEEEEEEEEETTEEEEEEEEE-CCT--T-CCHHHHHH-HHHHHHHHHHHHHHHHHC
T ss_pred             ecCCC--CEEEEEEEEccCCCeEEEEEEEE-eCC--C-CchHHHHH-HHHHHHHHHHHHHHHhcC
Confidence            87763  356666666533 3677777764 442  2 23333333 455678889999999884

>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Star-related lipid transfer protein 13
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.1e-08  Score=92.78  Aligned_cols=160  Identities=13%  Similarity=0.098  Sum_probs=102.2

Q ss_pred             CCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC
Q 008769          129 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN  208 (554)
Q Consensus       129 ~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g  208 (554)
                      ..+|...++.+|+       +|+.|+..    .+...+.++++..|+|+|++|+..+.+  .-+.|.|.|.++++++.-+
T Consensus        18 ~~GW~~~~~~~gi-------~V~~kk~~----~gs~~~~~k~~~~i~a~~~~vl~~~l~--~r~~Wd~~~~~~~~le~~~   84 (197)
T d2psoa1          18 FKGWVTCSSTDNT-------DLAFKKVG----DGNPLKLWKASVEVEAPPSVVLNRVLR--ERHLWDEDFVQWKVVETLD   84 (197)
T ss_dssp             CCSCEEECCSSSC-------EEEEECCC----SSCCCCEEEEEEEESSCHHHHHHHHHH--CGGGTCTTBCCCEEEEEEE
T ss_pred             CCCceEEecCCCe-------EEEEEecC----CCCCeEEEEEEEEEcCCHHHHHHHHHH--hHHHHhhhhheEEEEEEcC
Confidence            3489999999999       99998432    123367889999999999999854433  2578999999999998743


Q ss_pred             -CEEEEEEEeccceeE---EEEEEEEEEEEeecCCC--eEEEEEEecC-------Cc--eeEEEEEEEEcCCCeEEEEEE
Q 008769          209 -NKVRILQEGCKGLLY---MVLHARVVMDICEQHEQ--EISFEQVEGD-------FD--SFQGKWLFEQLGSHHTLLKYS  273 (554)
Q Consensus       209 -~~vrv~q~g~~gil~---~~~~~rvvLdv~E~~~r--rIsf~~veGd-------fr--~f~G~W~LeplgdG~TrVtY~  273 (554)
                       +...++.. .....+   .-|........ ..++.  .+....++.+       ++  .+.+.|.++|.+++.|+|+|.
T Consensus        85 ~~~~i~y~~-~~~p~pvs~RD~v~~~~~~~-~~~~~~~~i~~~Sv~~~~~p~~~~VR~~~~~~~~~i~p~~~~~t~vt~~  162 (197)
T d2psoa1          85 RQTEIYQYV-LNSMAPHPSRDFVVLRTWKT-DLPKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHI  162 (197)
T ss_dssp             TTEEEEEEE-ECCSSSCCCEEEEEEEEEES-CCGGGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEE
T ss_pred             CCCEEEEEE-ccCCCcccceeEEEEEEEEE-eCCCCEEEEEEEeccccCCCCCCcEEEEEEeccEEEEECCCCcEEEEEE
Confidence             33233332 111100   00111000000 01111  2333333322       22  678889999999999999999


Q ss_pred             EEEEeccCccchHHHHHHHHHhhHHHHHHHHHH
Q 008769          274 VESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD  306 (554)
Q Consensus       274 v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~  306 (554)
                      ++++|+  |.+|.|+++.+ ...+...+..||+
T Consensus       163 ~~~Dp~--G~iP~W~~n~~-~~~~~~~~~~lr~  192 (197)
T d2psoa1         163 CRIDLK--GHSPEWYSKGF-GHLCAAEVARIRN  192 (197)
T ss_dssp             EEECCS--SSCTTTTTTHH-HHHHHHHHHHHHH
T ss_pred             EEECCC--CcCchhHHhhh-HHHHHHHHHHHHH
Confidence            999994  77999998875 4444455555655

>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein MM0500
species: Methanosarcina mazei [TaxId: 2209]

Probab=98.78  E-value=1.4e-07  Score=83.80  Aligned_cols=144  Identities=13%  Similarity=0.094  Sum_probs=94.1

Q ss_pred             CCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCC----cEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeec
Q 008769          162 GGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQ  237 (554)
Q Consensus       162 ~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V----~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~  237 (554)
                      ..+...+..+.+|+||++.||++++|.+++++|++.-    .....-.+.++...+......+.. +.+...+ +++  .
T Consensus         8 ~~~~~~i~i~r~i~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d~~~gg~~~~~~~~~~g~~-~~~~g~v-~~i--~   83 (163)
T d1xuva_           8 EPGKQEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNE-YAFHGVN-HDV--T   83 (163)
T ss_dssp             CTTCSEEEEEEEESSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCE-EEEEEEE-EEE--E
T ss_pred             CCCCceEEEEEEeCCCHHHHHHHHcChHHhhhccCCCCccceeeeeeceeCceEEEEEEecCCCc-eEEEEEE-EEe--c
Confidence            4666788999999999999999999999999998641    122222234555555444434421 2233332 222  4


Q ss_pred             CCCeEEEEEEecC----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 008769          238 HEQEISFEQVEGD----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  312 (554)
Q Consensus       238 ~~rrIsf~~veGd----fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~  312 (554)
                      ++++|.|...-+.    -....-.|+|++.++++|+++.+..+...   ......+...+..+...+|..|++.+|+..
T Consensus        84 ~~~rl~~tw~~~~~~~~~~~~~v~~~~e~~~~g~t~~~~~~~~~~~---~~~~~~~~~g~~~GW~~~L~~L~~~le~~~  159 (163)
T d1xuva_          84 EPERIISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSVFQTI---EDRDGMLQSGMEEGINDSYERLDELLEKMK  159 (163)
T ss_dssp             TTTEEEEEEEETTSSSSCCCEEEEEEEEEETTTEEEEEEEEECSSH---HHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEeccCCCCCCCcEEEEEEEEEeCCCcEEEEEEEcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            7889988765322    12456788999998888888876654321   112233445567788899999999999864

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=98.57  E-value=1.9e-06  Score=77.35  Aligned_cols=135  Identities=7%  Similarity=0.109  Sum_probs=92.4

Q ss_pred             EEEEEEEEEcCCHHHHHH-HHhCcCcccccCcC-CcEEEEEEecC--CEEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769          166 RCVVASITVKAPVSEVWN-VMTAYETLPEIVPN-LAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  241 (554)
Q Consensus       166 r~V~asI~I~APpe~VWa-VLTDyE~yPewiP~-V~sSrVL~r~g--~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr  241 (554)
                      ..+..++.+++||+.+|. ++.|+.++|.|+|. ++++++++.++  +.++.+.-+..+-. -....+  ++..+...+.
T Consensus         3 ~~~~~E~~~~v~a~k~~ka~~~d~~~l~~~~p~~i~s~e~~eGdg~~GsIr~~~~~~g~~~-~~~kEr--l~~iD~~~~~   79 (147)
T d1txca1           3 FVFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKT-SFVLQK--VDAIDEANLG   79 (147)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHTTHHHHHHHTTSSEEEEEEEESSSSTTCEEEEEEEETTEE-EEEEEE--EEEEEGGGTE
T ss_pred             eEEEEEEeccCCHHHHHHhhhcccccCccccccccccceeecCCCCcceEEEEEEcCCCcc-eEEEEE--EEEEccCCcE
Confidence            347889999999999995 77799999999999 56667776644  34555543323211 122222  4445566789


Q ss_pred             EEEEEEecCC-----ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHH
Q 008769          242 ISFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAI  304 (554)
Q Consensus       242 Isf~~veGdf-----r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~AL  304 (554)
                      +.|+.++|+.     ..+..+-.+.+.++|+|.+++...|++.++..+|+-.++. ..+....+++++
T Consensus        80 ~~y~iiEGd~l~~~~~s~~~~~~~~~~~~ggs~vkw~~~y~~~~~~~~~ee~~k~-~k~~~~~~~Kav  146 (147)
T d1txca1          80 YDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDD-ALAKGAGFFKAI  146 (147)
T ss_dssp             EEEEEEESTTSCTTEEEEEEEEEEEECSTTCEEEEEEEEEEETTSCCCCHHHHHH-HHHHHHHHHHHH
T ss_pred             EEEEEEccCccccceEEEEEEEEEecCCCCCcEEEEEEEEEECCCCCCCHHHHHH-HHHHHhhhheec
Confidence            9999999973     2556667788888889999999999987666666644333 344444455543

>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein SA2116
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.49  E-value=5.2e-06  Score=73.63  Aligned_cols=147  Identities=13%  Similarity=0.048  Sum_probs=93.0

Q ss_pred             CCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcC----CcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeec
Q 008769          162 GGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQ  237 (554)
Q Consensus       162 ~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~----V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~  237 (554)
                      .+.+..|+.+..|+|||++||++++|.+.+++|++.    +..++.-.+.|+..+.......+.. +.+...+ +++  .
T Consensus         3 ~~~~~~i~ier~i~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~-~~~~g~v-~e~--~   78 (164)
T d2il5a1           3 ENEHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKV-NVIEGIY-ESL--V   78 (164)
T ss_dssp             TCEEEEEEEEEEESSCHHHHHHHTTCHHHHTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCE-EEEEEEE-EEE--E
T ss_pred             CCCcEEEEEEEEECCCHHHHHHHHcCHHHHhCcccCCCccceEEEeecccCceEEEEEecCCcce-EEEEEEE-EEE--c
Confidence            355778999999999999999999999999999864    2233333345665555444433321 2333332 233  4


Q ss_pred             CCCeEEEEEEe-c-CCceeEEEEEEEEcCCCeEEEEEEEEEEeccCc-cc-hHH-----HHHHHHHhhHHHHHHHHHHHH
Q 008769          238 HEQEISFEQVE-G-DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNS-LL-SEA-----IMEEVIYEDLPSNLCAIRDYV  308 (554)
Q Consensus       238 ~~rrIsf~~ve-G-dfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg-~L-P~~-----Lver~vre~l~~~L~ALR~rA  308 (554)
                      ++++|.|+..- + +.......+.+.+.++|+|+|++....-+.... .. ...     -....+..+...+|+.|++.+
T Consensus        79 p~~~i~~t~~~~~~~~~~~~~~~~~~e~~~ggT~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l  158 (164)
T d2il5a1          79 MDEYVKMTIGMPGLSETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVI  158 (164)
T ss_dssp             TTTEEEEEESCC--CCCCEEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEeccCCCCCceEEEEEEEEcCCCCEEEEEEEeecChhHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899887532 1 112334556666667788999998876543211 11 111     123456788999999999999


Q ss_pred             Hhhh
Q 008769          309 EKRE  312 (554)
Q Consensus       309 Er~~  312 (554)
                      |...
T Consensus       159 E~g~  162 (164)
T d2il5a1         159 ETST  162 (164)
T ss_dssp             HTTS
T ss_pred             hccC
Confidence            8753

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=98.37  E-value=6.4e-06  Score=74.42  Aligned_cols=138  Identities=13%  Similarity=0.250  Sum_probs=95.9

Q ss_pred             EEEEEEEEEcCCHHHHHHHH-hCcCc-ccccCcC-CcEEEEEEecC--CEEEEEEEeccceeEEEEEEEEEEEEeecCCC
Q 008769          166 RCVVASITVKAPVSEVWNVM-TAYET-LPEIVPN-LAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQ  240 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVL-TDyE~-yPewiP~-V~sSrVL~r~g--~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~r  240 (554)
                      ..+..++.+++|++.+|+++ .|..+ +|.++|. +.+++ ++.+|  +.++.+.-...+-. ..+..+  ++..+...+
T Consensus         3 ~t~e~E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~sve-veGdG~~GsIr~~~~~~~~~~-~~~Ker--ve~iD~~~~   78 (153)
T d2bk0a1           3 QTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVE-IKGDGGPGTLKIITLPDGGPI-TTMTLR--IDGVNKEAL   78 (153)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEE-EESSSSTTCEEEEECCTTSSC-CEEEEE--EEEEETTTT
T ss_pred             eEEEEEEeccCCHHHHHHHHhhcccccccccccceeeEEE-EECCCCCCeEEEEEEecCccc-eeeEEE--EEEEecCcc
Confidence            45788999999999999986 68887 5999997 56667 45543  34566554333321 123333  344456788


Q ss_pred             eEEEEEEecCC-----ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 008769          241 EISFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  308 (554)
Q Consensus       241 rIsf~~veGdf-----r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rA  308 (554)
                      .+.|+.++|+.     +.+...+.+.+.++|+|.+++.+++++.++...++ ---+...+.+..+++++.+++
T Consensus        79 ~~~y~viEGd~l~~~y~s~~~~~~~~~~~~ggsv~k~t~eYe~~~~~~~~~-e~~k~~~e~~~~~~K~iE~YL  150 (153)
T d2bk0a1          79 TFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPE-ENIKYANEQNTALFKALEAYL  150 (153)
T ss_dssp             EEEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCCCCCCH-HHHHHHHHHHHHHHHHHHHHH
Confidence            99999999972     47899999999998899999999999975443333 222344455666677776654

>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein NE0264
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.35  E-value=4e-06  Score=74.41  Aligned_cols=138  Identities=10%  Similarity=0.090  Sum_probs=87.6

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCcccccCcC----CcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeE
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI  242 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~----V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrI  242 (554)
                      .+..+.+|+||+++||++++|.+.+.+|+..    +..+++-.+.|+...+.....++-. +.+... ++++  .++++|
T Consensus         6 ~l~i~r~i~ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~-v~ei--~p~~rl   81 (165)
T d1xfsa_           6 DLMLKRELAVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVDLRPGGEFYTVMQDPEGNK-FPNSGC-FLEV--TDEKRL   81 (165)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEECCSTTCEEEEEEECTTCCE-EEEEEE-EEEE--ETTTEE
T ss_pred             EEEEEEEEcCCHHHHHHHHcCHHHHhhcCCCCCccceeecccceeCceEEEEEECCCCce-eeEEEE-EEEe--cCCcEE
Confidence            4788889999999999999999999999753    2334444456666555444333321 233333 2333  478899


Q ss_pred             EEEEEe----------------cCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHH
Q 008769          243 SFEQVE----------------GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD  306 (554)
Q Consensus       243 sf~~ve----------------Gdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~  306 (554)
                      .|+..-                .........|+|++.++ +|+|+........   .-........+..+-..+|..|++
T Consensus        82 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-gT~lt~~~~~~~~---~~~~~~~~~g~~~GW~~~l~~L~~  157 (165)
T d1xfsa_          82 IWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTSS-GTRYTACAMHNTP---GQRKLHEEMGFHEGWGTTITQLEE  157 (165)
T ss_dssp             EEESSEEGGGEECCC-----------CCEEEEEEEECSS-SEEEEEEEECSSH---HHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             EEEEeecccccccccccccccCCCCccEEEEEEEEEcCC-cEEEEEEEEcCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            886321                01124467899998765 5999887643210   011222333367788899999999


Q ss_pred             HHHhhh
Q 008769          307 YVEKRE  312 (554)
Q Consensus       307 rAEr~~  312 (554)
                      .+|+..
T Consensus       158 ~le~~~  163 (165)
T d1xfsa_         158 LLKQEK  163 (165)
T ss_dssp             HHHHHS
T ss_pred             HHHhcC
Confidence            998764

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=98.27  E-value=1.9e-05  Score=71.64  Aligned_cols=140  Identities=9%  Similarity=0.074  Sum_probs=97.4

Q ss_pred             EEEEEEEEEcCCHHHHHHHH-hCcCcc-cccCcCCcEEEEEEecCC--EEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769          166 RCVVASITVKAPVSEVWNVM-TAYETL-PEIVPNLAISKILSRENN--KVRILQEGCKGLLYMVLHARVVMDICEQHEQE  241 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVL-TDyE~y-PewiP~V~sSrVL~r~g~--~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr  241 (554)
                      ..+..++.+++|++.+|.++ .|..++ |.+.+.++++++++.+|+  .++.+.-+..+-. -....  +++..+...+.
T Consensus         3 ~t~~~E~~~~v~a~k~fka~~~d~~~l~pk~p~~i~s~e~~eGdG~~GsIr~~~~~~g~~~-~~~Ke--rie~vD~e~~~   79 (157)
T d1xdfa1           3 FTFEDESTSTIAPARLYKALVKDADAIIPKAVEAIQSIETVEGNGGPGTIKKLTLIEGGET-KYVLH--KIEAVDEANLR   79 (157)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHHSHHHHHHHHCTTEEEEEEEESSSSTTCEEEEEEEETTEE-EEEEE--EEEEEEGGGTE
T ss_pred             eEEEEEEeccCCHHHHHHHHhhchhhccccchhheecceeecCCCCCCcEEEEEEcCCCcc-EEEEE--EEEEEechhcE
Confidence            34788999999999999865 699886 888888899999987543  4565554333321 12222  34445566789


Q ss_pred             EEEEEEecCC-----ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769          242 ISFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       242 Isf~~veGdf-----r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE  309 (554)
                      +.|+.++|+.     +.+..+-.|.+.++|+|.+++.+.+++.++.-+++--+ +...+.+..+++++.+++-
T Consensus        80 ~~y~viEGd~l~~~~~s~~~~~k~~~~~~ggsv~k~t~eYe~~~~~~~~~e~i-k~~~e~~~~~~K~iEaYLl  151 (157)
T d1xdfa1          80 YNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEG-KAAKARGDAFFKAIENYLS  151 (157)
T ss_dssp             EEEEEESSTTSCTTEEEEEEEEEEEECTTSSEEEEEEEEEEESSSSCCCHHHH-HHHHHHHHTTTHHHHHHHH
T ss_pred             EEEEEEecccccccEEEEEEEEEEEcCCCCceEEEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHHHHHHh
Confidence            9999999973     47777888999888899999999999876544443322 2334445556666665543

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=98.27  E-value=1.3e-05  Score=72.72  Aligned_cols=141  Identities=11%  Similarity=0.131  Sum_probs=97.9

Q ss_pred             EEEEEEEEEcCCHHHHHHHH-hCcCc-ccccCcCC-cEEEEEEecCC--EEEEEEEeccceeEEEEEEEEEEEEeecCCC
Q 008769          166 RCVVASITVKAPVSEVWNVM-TAYET-LPEIVPNL-AISKILSRENN--KVRILQEGCKGLLYMVLHARVVMDICEQHEQ  240 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVL-TDyE~-yPewiP~V-~sSrVL~r~g~--~vrv~q~g~~gil~~~~~~rvvLdv~E~~~r  240 (554)
                      ..+..++.+++|++.+|.++ .|..+ +|.++|.+ +++++++.+++  .++.+.-+..+-. -....+  ++..+...+
T Consensus         3 ~~~e~E~~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~-~~~Ker--ve~iD~~~~   79 (159)
T d1fm4a_           3 FNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPF-KYVKDR--VDEVDHTNF   79 (159)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSS-SEEEEE--EEEEETTTT
T ss_pred             eEEEEEeeccCCHHHHHHHHHhCcccccccccCcceEEEEEECCCCCCCCEEEEEecCCCCc-eEEEEE--EEEEccccc
Confidence            34678899999999999975 69888 59999995 56677876543  4555543322211 122233  344556788


Q ss_pred             eEEEEEEecCC-----ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          241 EISFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       241 rIsf~~veGdf-----r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      .+.|+.++|+.     +.+..+-.|.+.++|+|.+++++++++.++.-+++--+ +...+.+..++++|.+++-+
T Consensus        80 ~~~y~viEGd~l~~~~~s~~~~~k~~~~~~gg~v~kwt~eYe~~~~~~~~~e~~-k~~ke~~~~~~K~iE~YLla  153 (159)
T d1fm4a_          80 KYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQV-KASKEMGETLLRAVESYLLA  153 (159)
T ss_dssp             EEEEEEEEBTTBTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCTTTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEeccccccceEEEEEEEEEecCCCCceEEEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence            99999999973     37788889999988999999999999875443333222 33455566677777776544

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=98.27  E-value=1.5e-05  Score=72.18  Aligned_cols=141  Identities=16%  Similarity=0.206  Sum_probs=96.5

Q ss_pred             EEEEEEEEEcCCHHHHHHHH-hCcCcc-cccCcC-CcEEEEEEecC--CEEEEEEEeccceeEEEEEEEEEEEEeecCCC
Q 008769          166 RCVVASITVKAPVSEVWNVM-TAYETL-PEIVPN-LAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQ  240 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVL-TDyE~y-PewiP~-V~sSrVL~r~g--~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~r  240 (554)
                      ..+..++.+++||+.+|.++ .|+.++ |.++|. ++++++++.++  +.++.+.-+..+-. .....+  ++..+...+
T Consensus         3 ~~~~~E~~~~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~-~~~KEr--ie~iD~~~~   79 (159)
T d1e09a_           3 FTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQY-GYVKHK--IDSIDKENY   79 (159)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCSSSC-EEEEEE--EEEEETTTT
T ss_pred             eEEEEEEeecCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCCCCcCcEEEEEEcCCCCc-EEEEEE--EEEEccccc
Confidence            45788899999999999985 799875 999999 56668887654  34666654433321 222333  344456688


Q ss_pred             eEEEEEEecCCc-----eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          241 EISFEQVEGDFD-----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       241 rIsf~~veGdfr-----~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      .+.|+.++|++.     .+...-.+.+.++++|.+++++++++..+..+|+-- -....+.+..++++|.+.+-+
T Consensus        80 ~~~y~viEGd~l~~~~~s~~~~~~~~~~~~~g~vvkwt~eYe~~~~~~~~~e~-~~~~~e~~~~~~K~iEayLla  153 (159)
T d1e09a_          80 SYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEH-VKAGKEKASNLFKLIETYLKG  153 (159)
T ss_dssp             EEEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecccccccEEEEEEEEEEccCCCCCcEEEEEEEEEECCCCCCCHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence            999999999852     445555666777788999999999987554343322 234455666677777776544

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

Probab=98.25  E-value=8e-07  Score=76.82  Aligned_cols=70  Identities=13%  Similarity=0.216  Sum_probs=61.1

Q ss_pred             CCCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHhcccccc
Q 008769            2 VDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQK   71 (554)
Q Consensus         2 v~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~~~~~~~   71 (554)
                      ..|+|..+.|.|++++.+++..++++|++++.|.+.+|...+.++++++++.+|.+||+++|+.-+..++
T Consensus        84 ~~~~~~~~~~~w~~~~~~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~~E~~~~~~~~  153 (155)
T d2rera1          84 ETGPFAYMNLHWTYRAVAGGTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDRHREGQR  153 (155)
T ss_dssp             SCTTEEEEEEEEEEEEETTEEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             cCccceeeEEEEEEeecCCccEEEEEEEEEECCCccccHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccC
Confidence            3588999999999999877666678899999999999999999999999999999999999976444443

>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein CV1439
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.23  E-value=9e-06  Score=70.15  Aligned_cols=131  Identities=15%  Similarity=0.155  Sum_probs=81.1

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcCC----cEEEEEEecCCEEEEEEEe-ccceeEEEEEEEEEEEEeecCCCeE
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRILQEG-CKGLLYMVLHARVVMDICEQHEQEI  242 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V----~sSrVL~r~g~~vrv~q~g-~~gil~~~~~~rvvLdv~E~~~rrI  242 (554)
                      |+.+.+|+||+++||++++|.+.+.+|++.-    ..+.+-.+.|+..+..... -.+.. ......+ +++  .++++|
T Consensus         4 i~~~r~i~ap~e~Vw~a~Tdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~~g~~-~~~~g~v-~~~--~p~~~i   79 (143)
T d1z94a1           4 IRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQK-HAFGGRY-LEL--VPGERI   79 (143)
T ss_dssp             EEEEEEESSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCE-EEEEEEE-EEE--ETTTEE
T ss_pred             EEEEEEECCCHHHHHHHhcCHHHHhhhhCCCCccceeEeeccccceeEEEEEeeCCCCcE-EEEEEEE-EEe--cCCeEE
Confidence            5666789999999999999999999998642    1222223355555443332 22221 2223332 232  478889


Q ss_pred             EEEEEecC--C-ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769          243 SFEQVEGD--F-DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  310 (554)
Q Consensus       243 sf~~veGd--f-r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr  310 (554)
                      .|+....+  . ....-+|+|++.++ +|+|++....-+       .......+..+....|..|++.+|+
T Consensus        80 ~~t~~~~~~~~~~~~~v~~~l~~~~~-gT~lt~~~~~~~-------~~~~~~~~~~GW~~~l~~L~~~lE~  142 (143)
T d1z94a1          80 RYTDRFDDAGLPGDMITTITLAPLSC-GADLSIVQEGIP-------DAIPPENCYLGWQQSLKQLAALVEP  142 (143)
T ss_dssp             EEEEEESCCC---CEEEEEEEEEETT-EEEEEEEEECCC-------TTSCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             EEEEeccCCCCCCcEEEEEEEEEcCC-CEEEEEEEEcCC-------ChhHHHHHHHHHHHHHHHHHHHHcC
Confidence            88765322  1 24467899999876 699988764322       1111234567788889999988774

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=98.22  E-value=2.3e-05  Score=70.83  Aligned_cols=138  Identities=10%  Similarity=0.149  Sum_probs=99.2

Q ss_pred             EEEEEEEEcCCHHHHHHHH-hCcCcc-cccCcCCcEEEEEEecCC--EEEEEEEeccceeEEEEEEEEEEEEeecCCCeE
Q 008769          167 CVVASITVKAPVSEVWNVM-TAYETL-PEIVPNLAISKILSRENN--KVRILQEGCKGLLYMVLHARVVMDICEQHEQEI  242 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVL-TDyE~y-PewiP~V~sSrVL~r~g~--~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrI  242 (554)
                      .+..++..++||+.+|.++ .|..++ |.++|.++++++++.+|+  .++.+.-+..+-. .....+  ++..+..++.+
T Consensus         4 t~~~E~~~~v~a~klfka~~~d~~~l~pk~~~~i~s~e~~eGdGg~GsIk~~~~~~~~~~-~~~Ker--ie~iD~en~~~   80 (155)
T d1icxa_           4 AFENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHT-SFVLHK--LDAIDEANLTY   80 (155)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESSSSTTCEEEEEEESSSSE-EEEEEE--EEEEEGGGTEE
T ss_pred             EEEEeEEecCCHHHHhhhheeccchhchhhhhheeeeeEecCCCccceEEEEEeccCCce-EEEEEE--EEEEcccccEE
Confidence            4678899999999999985 588887 899999999999987653  4555544333321 222223  34455678999


Q ss_pred             EEEEEecCC-----ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769          243 SFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  309 (554)
Q Consensus       243 sf~~veGdf-----r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE  309 (554)
                      .|++++|+.     ..+...-.+.+.++++|.+++.+++++.++ .+|+.-. +...+.+..+++++.+++-
T Consensus        81 ~y~viEGd~l~~~~~~~~~~~k~~~~~~~g~i~k~t~eYe~~g~-~~~e~~~-~~~ke~~~~~fK~iE~YLl  150 (155)
T d1icxa_          81 NYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGD-VLSETVR-DQAKFKGLGLFKAIEGYVL  150 (155)
T ss_dssp             EEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSS-SCCHHHH-TTHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCC-CCChhhH-HHHHHHHHHHHHHHHHHHh
Confidence            999999984     356777788898888899999999999754 4665432 2234556667777766654

>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BH1534
species: Bacillus halodurans [TaxId: 86665]

Probab=98.05  E-value=2.2e-05  Score=67.48  Aligned_cols=127  Identities=14%  Similarity=0.206  Sum_probs=77.3

Q ss_pred             EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEE
Q 008769          167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ  246 (554)
Q Consensus       167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~  246 (554)
                      .|+.++.|+|||+.||++|+|.+.+..|++....   ..+.+..  +...+..+.    +... ++++  .++++|.|+.
T Consensus         6 ~i~~~~~i~ap~e~Vw~alt~p~~~~~W~~~~~~---~~~~g~~--~~~~~~~~~----~~g~-v~~~--~~~~~l~~~~   73 (138)
T d1xn5a_           6 DIKKEVRFNAPIEKVWEAVSTSEGLAFWFMENDL---KAETGHH--FHLQSPFGP----SPCQ-VTDV--ERPIKLSFTW   73 (138)
T ss_dssp             CEEEEEEESSCHHHHHHHTTSHHHHHTTSCCBCC---CSCTTCE--EEEECSSCE----EEEE-EEEE--ETTTEEEEEE
T ss_pred             eEEEEEEECCCHHHHHHHHcCHHHhceEccCCcc---cccceee--EEecCCccc----eeEE-EEEE--eCCcEEEEEe
Confidence            4889999999999999999999999999986421   1122332  222222221    1222 2232  4789999986


Q ss_pred             EecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccc-----hHHHHHHHHHhhHHHHH-HHHHHHHH
Q 008769          247 VEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLL-----SEAIMEEVIYEDLPSNL-CAIRDYVE  309 (554)
Q Consensus       247 veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~L-----P~~Lver~vre~l~~~L-~ALR~rAE  309 (554)
                      ..+   ....+|+|++.++ +|+|++....-+.....+     ....+...++.+-...| +.||+.+|
T Consensus        74 ~~~---~~~v~~~l~~~~~-gT~lt~~~~g~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~Lk~~vE  138 (138)
T d1xn5a_          74 DTD---GWSVTFHLKEEEN-GTIFTIVHSGWKQGDTKVEKAGAESAVVHERMDRGWHDLVNERLRQIVE  138 (138)
T ss_dssp             TTT---TEEEEEEEEECSS-SEEEEEEEECCCSTTCBCSSSSSBHHHHHHHHHHHHHHHTTTTTHHHHC
T ss_pred             cCC---CeEEEEEEEEcCC-cEEEEEEEecCCCchhhhhhhcccchHHHHHHHHhHHHHHHHHHHHHhC
Confidence            332   4577899999775 699998765322111111     12233445555655555 46777654

>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BC4709
species: Bacillus cereus [TaxId: 1396]

Probab=98.02  E-value=1e-05  Score=70.79  Aligned_cols=132  Identities=14%  Similarity=0.235  Sum_probs=83.3

Q ss_pred             CceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeE
Q 008769          163 GVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI  242 (554)
Q Consensus       163 g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrI  242 (554)
                      +.+-.|..++.|+||+++||++|+|.+.+..|++.+.   +-.+.|+...+  .+..+..    ..++ +++  .++++|
T Consensus         5 ~~~~~i~~~~~i~ap~e~Vw~alTdp~~l~~W~~~~~---~~~~~G~~~~~--~~~~g~~----~g~v-~~~--~p~~~l   72 (143)
T d1xn6a_           5 NTLNDIKQTIVFNASIQKVWSVVSTAEGIASWFMPND---FVLEVGHEFHV--QSPFGPS----PCKV-LEI--DEPNHL   72 (143)
T ss_dssp             CSCCCEEEEEEESSCHHHHHHTTSCSHHHHTTSCCBC---CCCCTTCEECB--CCTTCCC----CEEE-EEE--ETTTEE
T ss_pred             CCCCeEEEEEEECCCHHHHHHHhcChHHhceEeeccC---cccccCceEEE--eccccce----eEEE-EEE--eCCcEE
Confidence            4455689999999999999999999999999998652   21234443322  2222221    1222 232  478899


Q ss_pred             EEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccch-----HHHHHHHHHhhHHHHH-HHHHHHHH
Q 008769          243 SFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLS-----EAIMEEVIYEDLPSNL-CAIRDYVE  309 (554)
Q Consensus       243 sf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP-----~~Lver~vre~l~~~L-~ALR~rAE  309 (554)
                      .|+.-.+   ...-+|+|++.++|+|+|++...--+..+..++     ...+...+..+-...| +.||+.+|
T Consensus        73 ~~tw~~~---~~~v~~~l~~~~~G~T~l~l~h~g~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~Lk~~lE  142 (143)
T d1xn6a_          73 SFSWDTD---GWVVSFDLKDLGDNKTEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVVE  142 (143)
T ss_dssp             EEEETTT---TEEEEEEEEEEETTEEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             EEEEcCC---CcEEEEEEEEcCCCcEEEEEEEeCCCCchhhhhhcchhhHHHHHHHhhCHHHHHHHHHHHHhC
Confidence            9885322   346789999988889999987642111111111     2233455666666676 57998887

>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Calicheamicin gene cluster protein CalC
species: Micromonospora echinospora [TaxId: 1877]

Probab=97.98  E-value=2.2e-05  Score=68.73  Aligned_cols=135  Identities=14%  Similarity=0.146  Sum_probs=84.7

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcC------CcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPN------LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  241 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~------V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr  241 (554)
                      |+.+++|+||++.||++++|  .+++|.|.      +....+..+.++....  ...++-.+  ... .++++  .++++
T Consensus         6 v~~~~~i~Ap~e~Vf~a~te--~~~~Ww~~~~~~~~~~~~~~~~~~gG~~~~--~~~dG~~~--~~g-~v~ei--~p~~r   76 (155)
T d1zxfa1           6 VRHSVTVKADRKTAFKTFLE--GFPEWWPNNFRTTKVGAPLGVDKKGGRWYE--IDEQGEEH--TFG-LIRKV--DEPDT   76 (155)
T ss_dssp             EEEEEEESSHHHHHHHHHTT--CSSSSSSGGGSTTTTCSSCEEETTTTEEEC--CCTTTSCC--CCE-EEEEE--ETTTE
T ss_pred             EEEEEEEeCCHHHHHHHHHh--hhHhhcCCCCCCceEEEEEEeeCCCceEEE--Ecccccee--eeE-EEEEE--ecCcE
Confidence            78899999999999999996  68888754      2233344444454322  22222111  111 22333  47889


Q ss_pred             EEEEEEecCC------ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchH--HHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 008769          242 ISFEQVEGDF------DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSE--AIMEEVIYEDLPSNLCAIRDYVEKREG  313 (554)
Q Consensus       242 Isf~~veGdf------r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~--~Lver~vre~l~~~L~ALR~rAEr~~~  313 (554)
                      |.|+...++.      ....-+|.|++.++++|+|++....-+.   .-+.  .-+...+..+-..+|..|++.+|+..+
T Consensus        77 l~~tw~~~~~~~~~~~~~s~v~~~~~~~~~~~T~ltl~h~g~~~---~~~~~~~~~~~~~~~GW~~~L~~L~~~le~~~~  153 (155)
T d1zxfa1          77 LVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFDR---MGTKHAKRVRNGMDKGWPTILQSFQDKIDEEGA  153 (155)
T ss_dssp             EEEECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEEECSSTT---SCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEecCCccccccccceEEEEEEEecCCCCEEEEEEEeccCc---ccchhHHHHHhhhhhhHHHHHHHHHHHhhhhcc
Confidence            9887543321      1346789999988888999887642111   0111  123445667899999999999998766


Q ss_pred             C
Q 008769          314 D  314 (554)
Q Consensus       314 ~  314 (554)
                      .
T Consensus       154 ~  154 (155)
T d1zxfa1         154 K  154 (155)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein EF2215
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.92  E-value=5.9e-05  Score=67.97  Aligned_cols=129  Identities=15%  Similarity=0.093  Sum_probs=86.3

Q ss_pred             CCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769          162 GGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  241 (554)
Q Consensus       162 ~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr  241 (554)
                      .+....+..+..|+|||+.||+.|||.+.++.|++....  .--+.|+.+.+...+  +    ....+ ++++  .++++
T Consensus         8 ~~~~~~f~~er~i~ap~e~Vw~AlTdpe~l~~W~~~~~~--~d~~~GG~~~~~~~~--~----~~~~~-v~~~--epp~r   76 (160)
T d2nn5a1           8 ENQTIYFGTERAISASPQTIWRYLTETDKLKQWFPELEI--GELGVNGFWRFILPD--F----EETMP-FTDY--AEEKY   76 (160)
T ss_dssp             ETTEEEEEEEEEESSCHHHHHHHHHCHHHHHHHCTTEEE--EECSTTCEEEEEETT--E----EEEEE-EEEE--ETTTE
T ss_pred             cCCcEEEEEEEEecCCHHHHHHHHcCHHHHHhhCCCCCc--ccccCCCeeEEEcCC--C----CcceE-EEEE--ecCCE
Confidence            366778899999999999999999999999999986432  223456665543221  1    11222 2232  47899


Q ss_pred             EEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 008769          242 ISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  312 (554)
Q Consensus       242 Isf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~  312 (554)
                      |.|+.-.     -.-+|+|++.++++|+|+++..+.+.    .+....  ....+=...|..|++.+|...
T Consensus        77 L~~tW~~-----~~v~~eL~~~~~~~t~l~l~~~~~~~----~~~~~~--~~~~GW~~~Ld~L~~~leg~~  136 (160)
T d2nn5a1          77 LGVTWDT-----GIIYFDLKEQAPHQTLLVFSESLPEN----FTTPRH--KDIAGWSIVLNRLKQVVETPD  136 (160)
T ss_dssp             EEEEETT-----EEEEEEEEEEETTEEEEEEEEEECTT----CSSCHH--HHHHHHHHHHHHHHHHHHCTT
T ss_pred             EEEEecC-----ceEEEEEecCCCCeEEEEEEEecCcc----ccchhh--hhHHHHHHHHHHHHHHHcCCC
Confidence            9887622     25688999887889999998875431    111111  122466788999999987543

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=97.91  E-value=1.1e-05  Score=68.95  Aligned_cols=63  Identities=16%  Similarity=0.316  Sum_probs=52.5

Q ss_pred             CCCCCCcceeeeEEeeecCCCCceEEEEEEEeec----CCCCCHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769            1 MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIP----RLNFPAIFLERIIRSDLPVNLQALACRAERS   65 (554)
Q Consensus         1 mv~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P----~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~   65 (554)
                      ++.|+|..|+|.|+++|.++  +|.++|++++.+    ...++..++++.+++++...|.+++++|+..
T Consensus        78 ~~~g~~~~~~g~w~l~~~~~--gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  144 (146)
T d2d4ra1          78 SPEGDFDRYEGTWVFLPEGE--GTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAA  144 (146)
T ss_dssp             EEEESCSEEEEEEEEEECSS--SEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EccCCcceEEEEEEEEecCC--ceEEEEEEEEEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35799999999999999754  588888877654    3456778999999999999999999999853

>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein SPO3351
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=97.69  E-value=0.00022  Score=60.91  Aligned_cols=129  Identities=10%  Similarity=0.009  Sum_probs=75.8

Q ss_pred             EEEEEEEcCCHHHHHHHHhCcCcccccCcC------CcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769          168 VVASITVKAPVSEVWNVMTAYETLPEIVPN------LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  241 (554)
Q Consensus       168 V~asI~I~APpe~VWaVLTDyE~yPewiP~------V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr  241 (554)
                      +..+..|+|||+.||++++|.+.+.+|++.      .....+-.+.++..........+-. +....++ +++  .++++
T Consensus         3 l~i~r~i~a~~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~g~~-~~~~g~v-~~~--~p~~r   78 (143)
T d3elia1           3 LRLEREFAVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQR-YKVSGQV-THV--KPPQS   78 (143)
T ss_dssp             EEEEEEESSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCCE-EEEEEEE-EEE--ETTTE
T ss_pred             EEEEEEECCCHHHHHHHhcCHHHHhhhcCCCCceeeeeeEEEeeccCccEEEEEECCCCcE-EEEEEEE-EEc--CCCCE
Confidence            677789999999999999999999999852      1122222223333334333333321 2222222 232  47888


Q ss_pred             EEEEEE--ecCCc---eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 008769          242 ISFEQV--EGDFD---SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  308 (554)
Q Consensus       242 Isf~~v--eGdfr---~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rA  308 (554)
                      |.|...  ..+-.   ...-+|.|++.++ +|+|++...-       +|..-.......+....|..|++.+
T Consensus        79 l~~t~~~~~~~~~~~~~~~vt~~l~~~~~-gT~l~~~~~~-------~~~~~~~~~~~~GW~~~L~~L~~~l  142 (143)
T d3elia1          79 VGFTWGWHDDDDRRGAESHVMFIVEPCAK-GARLILDHRE-------LGDDEMSLRHEEGWTSSLRKLAAEL  142 (143)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEECCBC---CEEEEEEEES-------CSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeecCCCCCCCCcEEEEEEEEEcCC-CEEEEEEEEc-------CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            877642  22211   2345567777765 5999887531       2333334566778888888888764

>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein BPP1335
species: Bordetella parapertussis [TaxId: 519]

Probab=97.43  E-value=0.00039  Score=62.74  Aligned_cols=132  Identities=6%  Similarity=0.064  Sum_probs=82.3

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccce------------eEEEEEEEEEEE
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGL------------LYMVLHARVVMD  233 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gi------------l~~~~~~rvvLd  233 (554)
                      +.++-+..|+||+++||++|+|.+.+.+|+....   +-.+.|+...+...+..+.            ..+.+..++ ++
T Consensus        19 ~~l~~er~~~Ap~e~VW~AlTdpe~l~~W~~p~~---~d~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v-~~   94 (183)
T d2k5ga1          19 QSIRFERLLPGPIERVWAWLADADKRARWLAGGE---LPRQPGQTFELHFNHAALTAETAPARYAQYDRPIVARHTL-LR   94 (183)
T ss_dssp             SSEEEEEEESSSSHHHHHHHHCHHHHTTTSCCCC---CCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCEEEEEEE-EE
T ss_pred             ceEEEEEEeCCCHHHHHHHHhChHHHhhhcCCCC---ccccCCCEEEEEecCCCCcccccccccccCCCceeEEEEE-EE
Confidence            3467788999999999999999999999986431   1123344444433211110            011223332 23


Q ss_pred             EeecCCCeEEEEEEecCC-ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769          234 ICEQHEQEISFEQVEGDF-DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  311 (554)
Q Consensus       234 v~E~~~rrIsf~~veGdf-r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~  311 (554)
                      +  .++++|.|+...+.- ..-.-+|+|++.++ +|+|++...--       ++.-.-.....+-...|..|++.++..
T Consensus        95 ~--~p~~rl~~tw~~~~~~~~s~v~~~l~~~g~-gT~ltl~~~~~-------~~~~~~~~~~~GW~~~L~~L~~~leg~  163 (183)
T d2k5ga1          95 C--EPPRVLALTWGGGAGEAPSEVLFELSEAGE-QVRLVLTHTRL-------ADRAAMLDVAGGWHAHLAVLAGKLAGQ  163 (183)
T ss_dssp             E--ETTTEEEEECCCCSSSSCCEEEEEEEECSS-SEEEEEEEECC-------CSHHHHHHHTTTTTTHHHHHHHHHHTS
T ss_pred             E--eCCeEEEEEeccCCCCCcEEEEEEEEEcCC-cEEEEEEEecC-------CChhhHHHHhhhHHHHHHHHHHHHCCC
Confidence            3  478899988655432 24466789998775 69998776421       222222345667788999999998854

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein CC1736
species: Caulobacter crescentus [TaxId: 155892]

Probab=97.02  E-value=0.00047  Score=59.69  Aligned_cols=65  Identities=14%  Similarity=0.272  Sum_probs=58.9

Q ss_pred             CCCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHhccc
Q 008769            2 VDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGW   68 (554)
Q Consensus         2 v~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~~~~   68 (554)
                      .+|.|+.+.|.|++++.+  .+|.++|.++...+..++-.+++..+.+=+...+.|..+||+.+|+.
T Consensus        84 ~~g~f~~l~~~W~f~~~~--~~T~V~~~l~fe~~~~l~~~~~~~~~~~~~~~~i~aF~~Ra~~lyg~  148 (148)
T d1t17a_          84 LYGPFKRLNNGWRFMPEG--DATRVEFVIEFAFKSALLDAMLAANVDRAAGKLIACFEARAQQLHGA  148 (148)
T ss_dssp             SSTTSSCEEEEEEEEEET--TEEEEEEEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             cCchhhhcccceeeccCC--CceEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            578999999999999965  46999999999999999999999999888999999999999998763

>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0026  Score=54.61  Aligned_cols=120  Identities=13%  Similarity=0.067  Sum_probs=72.8

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEE
Q 008769          166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE  245 (554)
Q Consensus       166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~  245 (554)
                      ..|..+.+++|||++||++++|.+.+..|+..  .+++-.+.|+..++    ..+-    ...+ ++++  .++++|.|.
T Consensus         4 ~~i~~~r~~~ap~e~Vw~a~tdpe~l~~W~~~--~~~~d~~~Gg~f~~----~~g~----~~G~-~~ev--~p~~rlv~t   70 (132)
T d1x53a1           4 CKITLKETFLTSPEELYRVFTTQELVQAFTHA--PATLEADRGGKFHM----VDGN----VSGE-FTDL--VPEKHIVMK   70 (132)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTCHHHHHHHSCS--CCBCCCSTTCCCBB----TTTT----EECC-EEEE--ETTTEEEEE
T ss_pred             eEEEEEEEECCCHHHHHHHHcCHHHHHhhhCC--ccccccccCCEEEE----Eecc----eeEE-EEEE--eCCCEEEEE
Confidence            34778889999999999999999999999843  23333344443222    1111    1112 1233  477787765


Q ss_pred             E--EecCC-ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHH-HHHHHHHH
Q 008769          246 Q--VEGDF-DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDY  307 (554)
Q Consensus       246 ~--veGdf-r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~-~L~ALR~r  307 (554)
                      -  .+.+- ....-+|+|++.+ ++|+|++...--       |..- ...++.+-.. .++.||+.
T Consensus        71 w~~~~~~~~~~s~vt~~l~~~~-~~T~l~l~~~g~-------p~~~-~e~~~~GW~~~~~~~lk~~  127 (132)
T d1x53a1          71 WRFKSWPEGHFATITLTFIDKN-GETELCMEGRGI-------PAPE-EERTRQGWQRYYFEGIKQT  127 (132)
T ss_dssp             EEETTSCTTCCEEEEEECCBCS-SCEEEEEEEEEE-------EHHH-HHHHHHTTHHHHHHHHHHH
T ss_pred             EecCCCCCCCcEEEEEEEEECC-CcEEEEEEEECC-------Ccch-HHHHHhhHHHHHHHHHHHH
Confidence            3  22222 1346788999876 579999987643       3322 2345555544 57777764

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.49  E-value=0.064  Score=45.77  Aligned_cols=107  Identities=7%  Similarity=0.209  Sum_probs=73.2

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEE
Q 008769          165 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  244 (554)
Q Consensus       165 ~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf  244 (554)
                      ...+.+++.|++|++..|.++.|....| |...   +                         ..+  ++..+..++.+.|
T Consensus         4 ~gkl~~eveik~~a~kf~~~~~~~~~~~-~~~~---~-------------------------Ker--Ve~vD~en~sity   52 (120)
T d1vjha_           4 KGALSVKFDVKCPADKFFSAFVEDTNRP-FEKN---G-------------------------KTE--IEAVDLVKKTMTI   52 (120)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHHHTTSC-SSTT---C-------------------------EEE--EEEEETTTTEEEE
T ss_pred             ceEEEEEEEecCCHHHHHHHhhhccCCC-CCcc---c-------------------------EEE--EEEEcCCCCEEEE
Confidence            4568899999999999999997665532 2100   0                         111  2334456789999


Q ss_pred             EEEecCC----ceeEEEEEEEEcCCC-eEEEEEEEEEEeccCc-cchHHHHHHHHHhhHHHHHHHHHHH
Q 008769          245 EQVEGDF----DSFQGKWLFEQLGSH-HTLLKYSVESKMQKNS-LLSEAIMEEVIYEDLPSNLCAIRDY  307 (554)
Q Consensus       245 ~~veGdf----r~f~G~W~LeplgdG-~TrVtY~v~~eP~~gg-~LP~~Lver~vre~l~~~L~ALR~r  307 (554)
                      +.++|++    +.|.++..+.|.++| +|.+++.+.+++.++. +-|..++     +.+..++++|-+.
T Consensus        53 ~vieGdvl~~yksf~~~i~~~p~~~g~gsi~kwt~eYek~~~~~p~p~~~~-----e~~~~~~K~id~y  116 (120)
T d1vjha_          53 QMSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSII-----DESVKYFKKLDEA  116 (120)
T ss_dssp             EEECTTGGGTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHHHH-----HHHHHHHHHHHHH
T ss_pred             EEEeeccccceeEEEEEEEEEecCCCCceEEEEEEEEEeCCCCCCCHHHHH-----HHHHHHHHHHHHH
Confidence            9999995    489999999998765 7999999999986432 2344343     3333455555444

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

Probab=96.49  E-value=0.0039  Score=51.89  Aligned_cols=60  Identities=18%  Similarity=0.136  Sum_probs=50.4

Q ss_pred             CCCCcceeeeEEeeecCCCCceEEEEEEEeecC-CCCCHHHHHHHHhcchhHHHHHHHHHHH
Q 008769            3 DGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPR-LNFPAIFLERIIRSDLPVNLQALACRAE   63 (554)
Q Consensus         3 ~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~-~~~P~~lve~~~~~dlp~nL~Ai~~~ae   63 (554)
                      .|+|....|.|.+++.+++ +|+|+|++++.+. ..++..++...++++++..|..||+.||
T Consensus        76 ~~~~~~~~~~~~~~~~~~g-~t~vt~~~~~~g~~~~~~~~~~~~~v~~~~~~~l~~LK~~~E  136 (137)
T d2b79a1          76 ATPFGNVLFEHEILENPDG-TISLRHSVSLTDSDTTEEALAFLKQIFADVPESVGKLKQILE  136 (137)
T ss_dssp             EETTEEEEEEEEEEECTTS-CEEEEEEEEECSCSCCTTHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred             cccceeeeeEEEEccCCCC-cEEEEEEEecccccchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4678889999999987654 7899999999964 4444557888899999999999999997

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=95.81  E-value=0.0097  Score=50.51  Aligned_cols=60  Identities=17%  Similarity=0.226  Sum_probs=48.5

Q ss_pred             CCCCCC--cceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHH
Q 008769            1 MVDGDF--KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACR   61 (554)
Q Consensus         1 mv~GDF--~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~   61 (554)
                      |++|+|  +.|.|.|+|+|..++.+|.++|..++.|.- ++...+...++......|.+++++
T Consensus        74 ~~~~~~p~~~~~~~~~l~p~~~g~~t~v~w~~~f~p~~-~~~~~~~~~~~~~~~~~l~~L~~~  135 (138)
T d3cnwa1          74 IMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPVE-VSDEEAINLFHGIYSDGLKALQQA  135 (138)
T ss_dssp             EEECSSSEEEEEEEEEEEECSSTTCEEEEEEEEEEESS-SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCcceeeEEEEEEEECCCCCeEEEEEEEEEecCC-CCHHHHHHHHHHHHHHHHHHHHHh
Confidence            356775  889999999998888889999999999964 555555566777788888888875

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.033  Score=49.72  Aligned_cols=56  Identities=13%  Similarity=0.191  Sum_probs=50.7

Q ss_pred             ceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769            8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER   64 (554)
Q Consensus         8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~   64 (554)
                      .+.|.|.|+|.. ..+|.++|.+.+-|+-++|..|+....++-+|.-|.+|++.|.+
T Consensus       147 ~~~~~~~l~~~~-~~~t~v~~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~l~k~~~~  202 (203)
T d1ln1a_         147 QYKQSLAIESDG-KKGSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQN  202 (203)
T ss_dssp             CEEEEEEEEECS-SSSEEEEEEEEECCSSCCCHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred             eeeEEEEEEecC-CCcEEEEEEEEcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            577999999975 45799999999999999999999999999999999999999864

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.13  E-value=0.02  Score=46.88  Aligned_cols=58  Identities=9%  Similarity=0.118  Sum_probs=46.3

Q ss_pred             CCCcceeeeEEeeecCCCCceEEEEEEEeecCC---CCCHHHHHHHHhcchhHHHHHHHHHHH
Q 008769            4 GDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRL---NFPAIFLERIIRSDLPVNLQALACRAE   63 (554)
Q Consensus         4 GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~---~~P~~lve~~~~~dlp~nL~Ai~~~ae   63 (554)
                      +....+++.|.+++.  +.+|.++|..++.+..   .++-.+|+..+++++...|.+++++++
T Consensus        85 ~~~~~~~~~~~l~~~--~~gt~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~~~l~~lk~~~~  145 (147)
T d2ns9a1          85 GSTLDFTLRFAVEPS--GGGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELG  145 (147)
T ss_dssp             SEEEEEEEEEEEEEE--TTEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccceeeEEEEEEEec--CCCcEEEEEEEEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            335567888999985  4667888888887764   344568999999999999999999875

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.45  E-value=0.13  Score=45.86  Aligned_cols=58  Identities=10%  Similarity=0.072  Sum_probs=51.9

Q ss_pred             ceeeeEEeeecCCC-CceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769            8 KFEGKWSIKSGTRS-STTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS   65 (554)
Q Consensus         8 ~f~G~W~l~~~~~~-~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~   65 (554)
                      .+-|.|.++|.+.+ ..|.++|.+.+-|+-++|..|+...+.+-++.-+..+|++..++
T Consensus       154 ~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lrk~~~k~  212 (214)
T d1em2a_         154 NGPGGMIVLKSASNPRVCTFVWILNTDLKGRLPRYLIHQSLAATMFEFAFHLRQRISEL  212 (214)
T ss_dssp             ECSEEEEEEECSSCTTCEEEEEEECEECCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEeeeEEEEECCCCCCeEEEEEEEEeCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            45689999997654 56999999999999999999999999999999999999998765

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.70  E-value=0.16  Score=44.88  Aligned_cols=54  Identities=17%  Similarity=0.071  Sum_probs=48.1

Q ss_pred             ceeeeEEeeecCCC-CceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHH
Q 008769            8 KFEGKWSIKSGTRS-STTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACR   61 (554)
Q Consensus         8 ~f~G~W~l~~~~~~-~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~   61 (554)
                      .+.|.|.++|.+++ .+|.++|.+.+=|+-++|..+|...+.+-++.-+..+|++
T Consensus       143 ~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr~~  197 (199)
T d1jssa_         143 NHPCGWFCVPLKDSPSQSLLTGYIQTDLRGMIPQSAVDTAMASTLANFYSDLRKG  197 (199)
T ss_dssp             ECSEEEEEEEETTEEEEEEEEEEECEECCSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeeeEEEEEcCCCCCcEEEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            35688999997654 4699999999999999999999999999999999999876

>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: PA1206-like
domain: Hypothetical protein PA1206
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.11  E-value=8.7  Score=33.31  Aligned_cols=125  Identities=12%  Similarity=0.146  Sum_probs=75.1

Q ss_pred             CCHHHHHHHHhC-cCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEEe-cCCce
Q 008769          176 APVSEVWNVMTA-YETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVE-GDFDS  253 (554)
Q Consensus       176 APpe~VWaVLTD-yE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~ve-Gdfr~  253 (554)
                      -+.+++|+-|.- .++=-.|+|.+.+|+|+++.++.+.-. .-+..   ..+..+++    ..++.++.|.... |+...
T Consensus        20 LTr~QlW~GL~lrar~p~~Fv~~l~~c~v~~~~~~~~~Re-l~fg~---~~v~e~Vt----l~~~~~v~f~~~a~~~~~g   91 (151)
T d2ffsa1          20 LDRLQLWEGLVCRAREPQYFVVGLERFEILVDDGDRLHRR-LYLPG---LVVEDEVV----LKAPDSAHYSIKPSAEVAG   91 (151)
T ss_dssp             CCHHHHHHHHHHHHHCGGGTCTTCCEEEEEEECSSEEEEE-EEETT---EEEEEEEE----EETTTEEEEEECCCSSSBE
T ss_pred             cCHHHHHHHHHHhhcCHhhcccccceEEEEEecCCeEEEE-EEECC---ceeEEEEE----EcCCcEEEEEcccccCCCC
Confidence            346799996654 455556999999999999988865221 21222   23444443    3588899997554 44333


Q ss_pred             eEEEEEEEEcCCCeEEEEEEEEEEeccC---ccchHHHHHHHHHhhHHHHHHHHHHHH
Q 008769          254 FQGKWLFEQLGSHHTLLKYSVESKMQKN---SLLSEAIMEEVIYEDLPSNLCAIRDYV  308 (554)
Q Consensus       254 f~G~W~LeplgdG~TrVtY~v~~eP~~g---g~LP~~Lver~vre~l~~~L~ALR~rA  308 (554)
                      -.-+-+++..++|.=-|+|..+......   ...-.-+++...++....+++-||++.
T Consensus        92 ~~l~~~Ieep~~g~L~lrf~Ye~~~p~~~~~~~~~~e~~ksaY~~ad~dTvr~IRe~~  149 (151)
T d2ffsa1          92 GSLDMTIEEPEPGSLFVRFAYCTRYLQPLGDELPYDAFVKQAYIAMDVETIATIRDRF  149 (151)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEECSCC--CCCCCBHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEccCCCCeEEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHhHHHHHHHHHHh
Confidence            2333356555566566677665432110   000122466666777778999999875