Citrus Sinensis ID: 008818

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550--
MEREVYPVPVKSESGTAESSTEDISKTGQASKLFILADLNNNPPETDADANTSPLVSAPELSRLTNEDSNHSSSHHDKGSILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSSNL
ccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHHccccccHHHHHccHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHcHHHHHHHHHHHHHccccccccccccHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccc
cccEEEccccccccccEccccccccccccccEEEEEEEcccccccccccccccccccccHHHHHEcccccccccccccccEEEEccccccHHHHHHHHHccccHHHHHHHccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccc
merevypvpvksesgtaesstedisktgQASKLFILADlnnnppetdadantsplvsapelsrltnedsnhssshhdkgsilMSKEMDVAEVEGKKINKLGKCRSRISSKMdsalefgvdadgdqsglgtssssreEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRlgqplkavsSYEKAEEILLRCEADIARPELLSLVQIHHAqcllpessgdnsldkelePEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLlavdpnncdcignlgiayfqsgdmeqSAKCFQDLILKDQNHPAALINYAALLLCKYGsvlagagantgegacldqASAVNVAKECLLAALKADPKAAHIWANLANAYyltgdhrssgkclekaaklepncmsTRYAVAVSRIkdaersqepteqlSWAGNEMASIlregdpvqieppiawaGFAAVQKTHHEVAAAFETEENELSKMEECagagesaflDQASAVNVAKECLLAALKADPKAAHIWANLANAYyltgdhrssgkcLEKVLMVYCSSNL
merevypvpvksesgtaesstediskTGQASKLFILADLNNNPPETDADANTSPLVSAPELSRltnedsnhssshhdkgsilMSKEMDVAEVEgkkinklgkcrsRISSKMDSALEfgvdadgdqsglgtssssreekvSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAklepncmsTRYAVAVSRIKdaersqepteqlsWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSSNL
MEREVYPVPVKSESGTAESSTEDISKTGQASKLFILADLNNNPPETDADANTSPLVSAPELSRLTNEDSNhssshhDKGSILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTssssreekvssLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNsldkelepeeleeilsklkesMQSDTRQAVVWNTLGLILLKsgrlqssisvlssllAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECllaalkadpkaaHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECllaalkadpkaaHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSSNL
*********************************FIL************************************************************************************************************GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL**********************************QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV*************************ILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAF******************SAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC****
*****YP****************************LA******************VSAPELSRLTNEDSNHSSSHHDKGSILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS**
*************************KTGQASKLFILADLNNNPPETDADANTSPLVSAPELSR****************SILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGD******************KTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI*************SWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSSNL
**REVYPVPVKSES*TAE****DISKTGQASKLFILADLNNNPPE******TSPLVSAPELSRLTNED***********SILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS***
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MEREVYPVPVKSESGTAESSTEDISKTGQASKLFILADLNNNPPETDADANTSPLVSAPELSRLTNEDSNHSSSHHDKGSILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSSNL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query552 2.2.26 [Sep-21-2011]
Q9M8Y0 977 Probable UDP-N-acetylgluc no no 0.409 0.231 0.234 2e-05
Q9FNS4662 PsbB mRNA maturation fact N/A no 0.367 0.306 0.195 0.0002
Q3UV71942 Transmembrane and TPR rep no no 0.518 0.303 0.217 0.0004
Q8CGY8 1046 UDP-N-acetylglucosamine-- no no 0.242 0.128 0.245 0.0006
O15294 1046 UDP-N-acetylglucosamine-- yes no 0.242 0.128 0.245 0.0006
Q27HV0 1046 UDP-N-acetylglucosamine-- yes no 0.242 0.128 0.245 0.0006
P81436 1046 UDP-N-acetylglucosamine-- yes no 0.242 0.128 0.245 0.0006
P56558 1036 UDP-N-acetylglucosamine-- no no 0.242 0.129 0.245 0.0007
>sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1 Back     alignment and function desciption
 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 109/264 (41%), Gaps = 38/264 (14%)

Query: 154 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 213
           P    A+  LG +Y+ LG+P +A+  Y+ A +  +R  + +A   + S+           
Sbjct: 254 PAFPDAYLNLGNVYKALGRPTEAIMCYQHALQ--MRPNSAMAFGNIASIY---------- 301

Query: 214 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 273
                       E  +L+  +   K+++  D R    +N LG  L   GR+  ++   + 
Sbjct: 302 -----------YEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGRVDEAVRCYNQ 350

Query: 274 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI-----LKDQNHPAALI-----NYA 323
            LA+ PN+   + NLG  Y +   M  ++  F+  +     L    +  A+I     NY+
Sbjct: 351 CLALQPNHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYS 410

Query: 324 ALLLCKYGSVLA----GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 379
             + C Y  VL      A A    G    +   V  A +  + A+   P  A   ANLA+
Sbjct: 411 DAISC-YNEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHANLAS 469

Query: 380 AYYLTGDHRSSGKCLEKAAKLEPN 403
           AY  +G   ++    ++A  L P+
Sbjct: 470 AYKDSGHVEAAITSYKQALLLRPD 493
O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|Q9FNS4|MBB1_CHLRE PsbB mRNA maturation factor Mbb1, chloroplastic OS=Chlamydomonas reinhardtii GN=MBB1 PE=2 SV=1 Back     alignment and function description
>sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing protein 1 OS=Mus musculus GN=Tmtc1 PE=2 SV=2 Back     alignment and function description
>sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2 Back     alignment and function description
>sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3 Back     alignment and function description
>sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1 Back     alignment and function description
>sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2 Back     alignment and function description
>sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query552
255540413650 o-linked n-acetylglucosamine transferase 0.846 0.718 0.730 0.0
225456798 658 PREDICTED: probable UDP-N-acetylglucosam 0.920 0.772 0.659 0.0
356507317644 PREDICTED: tetratricopeptide repeat prot 0.833 0.714 0.662 1e-171
224119546 665 predicted protein [Populus trichocarpa] 0.842 0.699 0.683 1e-168
356516597629 PREDICTED: probable UDP-N-acetylglucosam 0.802 0.704 0.665 1e-166
297793915650 tetratricopeptide repeat-containing prot 0.949 0.806 0.579 1e-163
449469594647 PREDICTED: probable UDP-N-acetylglucosam 0.847 0.723 0.646 1e-161
51969340649 unknown protein [Arabidopsis thaliana] 0.947 0.805 0.580 1e-161
30697806649 tetratricopeptide repeat (TPR)-containin 0.947 0.805 0.579 1e-159
358348985652 UDP-N-acetylglucosamine-peptide N-acetyl 0.755 0.639 0.690 1e-155
>gi|255540413|ref|XP_002511271.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] gi|223550386|gb|EEF51873.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/478 (73%), Positives = 394/478 (82%), Gaps = 11/478 (2%)

Query: 8   VPVKSESGTAESSTEDISKTGQASKLFILADLNNNPPETDADANTSPLVSAPELSRLTNE 67
            P+K+E    E+S +D SK  Q  KL +LADLN NPPETD   N S  +S P+LSRLTN+
Sbjct: 13  TPIKTELNAMETSLDDSSKAAQPPKLVVLADLNANPPETDT--NDSVNLSVPDLSRLTND 70

Query: 68  DSNHSSSHHDKGSILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSG 127
           +S       DK S+   KE D  E EGKK+NKLGKCRSR +SK+D++L++G D D DQ G
Sbjct: 71  ES------QDKSSV-ACKEGDTVEFEGKKLNKLGKCRSR-NSKLDASLDYGPDIDADQPG 122

Query: 128 LGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEIL 187
            G  SS REEKVSSLKTGLVHVA+KMPKNAHAHF+LGLMYQRLGQP KAV +YEKAEEIL
Sbjct: 123 QGPISS-REEKVSSLKTGLVHVAKKMPKNAHAHFILGLMYQRLGQPQKAVFAYEKAEEIL 181

Query: 188 LRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ 247
           LR EA++ARPE LSLVQIHHAQC+L E+S DNSLDKELE EELEE+LS++KESMQSD RQ
Sbjct: 182 LRSEAEVARPEFLSLVQIHHAQCILLENSSDNSLDKELEAEELEEVLSRMKESMQSDVRQ 241

Query: 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 307
           A VWNTLGLILLKSGRLQS+ISV SSLLA+D +N DC+GNLGIAY QSGD+E SAKCFQ+
Sbjct: 242 AAVWNTLGLILLKSGRLQSAISVWSSLLAMDTSNYDCLGNLGIAYLQSGDLELSAKCFQE 301

Query: 308 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 367
           LILKDQNHPAA +NYAALLLCKYGSV+AG GAN GEGA +  A  V+VA ECLLA LK D
Sbjct: 302 LILKDQNHPAAFVNYAALLLCKYGSVVAGPGANAGEGASVYWAEPVHVAMECLLAGLKVD 361

Query: 368 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE 427
           PKAAH+WANLANAYYLTGD+RSS KCLEK+AKLEPNCM TRYAVAV RIKDAERSQ+P E
Sbjct: 362 PKAAHLWANLANAYYLTGDYRSSSKCLEKSAKLEPNCMCTRYAVAVQRIKDAERSQDPNE 421

Query: 428 QLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 485
           QLSWAGNEMASILREG+ V IE PIAWAG A V K  HE+AAAFETE NEL+ +EE A
Sbjct: 422 QLSWAGNEMASILREGESVPIEFPIAWAGLAMVHKAQHEIAAAFETERNELADVEERA 479

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225456798|ref|XP_002275611.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Vitis vinifera] gi|297733645|emb|CBI14892.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356507317|ref|XP_003522414.1| PREDICTED: tetratricopeptide repeat protein 37-like [Glycine max] Back     alignment and taxonomy information
>gi|224119546|ref|XP_002318101.1| predicted protein [Populus trichocarpa] gi|222858774|gb|EEE96321.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356516597|ref|XP_003526980.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] Back     alignment and taxonomy information
>gi|297793915|ref|XP_002864842.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297310677|gb|EFH41101.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449469594|ref|XP_004152504.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|51969340|dbj|BAD43362.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30697806|ref|NP_201125.2| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] gi|51971054|dbj|BAD44219.1| unknown protein [Arabidopsis thaliana] gi|51971080|dbj|BAD44232.1| unknown protein [Arabidopsis thaliana] gi|332010335|gb|AED97718.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|358348985|ref|XP_003638521.1| UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase 110 kDa subunit [Medicago truncatula] gi|355504456|gb|AES85659.1| UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase 110 kDa subunit [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query552
TAIR|locus:2162027 649 AT5G63200 "AT5G63200" [Arabido 0.835 0.710 0.559 8.4e-136
TAIR|locus:2162027 AT5G63200 "AT5G63200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1311 (466.6 bits), Expect = 8.4e-136, Sum P(2) = 8.4e-136
 Identities = 268/479 (55%), Positives = 326/479 (68%)

Query:     8 VPVKSESGTAESSTEDISKTGQASKLFILADLNNNPPETDADANTS-PLVSAPELSRLTN 66
             + VK E  T +S +  +       KL +LADLN NPPETD D ++S P+ + P ++RL+N
Sbjct:     7 IAVKCEPMTVDSPSRPL-------KLVVLADLNFNPPETD-DLDSSIPIPTPPPITRLSN 58

Query:    67 EDSNXXXXXXDKGSILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQS 126
             E+S+       +G IL  KE++  EVE KKI+K+GKCRSR  SK++S+ + GVDADGD +
Sbjct:    59 EESH------QEGGILTCKEVEPGEVEAKKISKVGKCRSR--SKIESSSDCGVDADGDLA 110

Query:   127 GLGTXXXXXXXXXXXLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 186
               G            LK GL+HVARKMPKNAHAHF+LGLM+QRLGQ  KA+  YEKAEEI
Sbjct:   111 NQGVPASREEKISN-LKMGLIHVARKMPKNAHAHFILGLMFQRLGQSQKAIPEYEKAEEI 169

Query:   187 LLRCEADIARPELLSLVQIHHAQCLLPESSGDNXXXXXXXXXXXXXXXXXXXXXMQSDTR 246
             LL CE +IARPELL LVQIHH QCLL +  GD                      ++ D R
Sbjct:   170 LLGCEPEIARPELLLLVQIHHGQCLLLDGFGDTDSVKELEGEELEEILSKLKDSIKLDVR 229

Query:   247 QAVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 306
             QA VWNTLGL+LLK               A+ P+N DC+ NLG+AY QSGDME SAKCFQ
Sbjct:   230 QAAVWNTLGLMLLKAGCLMSAISVLSSLLALVPDNYDCLANLGVAYLQSGDMELSAKCFQ 289

Query:   307 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECXXXXXXX 366
             DL+LKD NHPAALINYAA LLCK+ S +AGAGAN G  A  DQ + +NVAKEC       
Sbjct:   290 DLVLKDHNHPAALINYAAELLCKHSSTVAGAGANGGADASEDQKAPMNVAKECLLAALRS 349

Query:   367 XXXXXHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPT 426
                  H W NLAN+YY+ GDHRSS KCLEKAAKL+PNCM+TR+AVAV RIKDAERSQ+ +
Sbjct:   350 DPKSAHAWVNLANSYYMMGDHRSSSKCLEKAAKLDPNCMATRFAVAVQRIKDAERSQDAS 409

Query:   427 EQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 485
             +QLSWAGNEMAS++REG+ V I+PPIAWAG A   K  HE+AAAF  + NEL++MEE A
Sbjct:   410 DQLSWAGNEMASVIREGESVPIDPPIAWAGLAMAHKAQHEIAAAFVADRNELTEMEERA 468
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00015910001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (658 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query552
TIGR02917 899 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system 1e-08
cd00189100 cd00189, TPR, Tetratricopeptide repeat domain; typ 2e-08
cd00189100 cd00189, TPR, Tetratricopeptide repeat domain; typ 3e-07
TIGR02917899 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system 8e-07
TIGR02917899 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system 2e-06
TIGR02917 899 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system 5e-06
COG0457291 COG0457, NrfG, FOG: TPR repeat [General function p 9e-06
cd00189100 cd00189, TPR, Tetratricopeptide repeat domain; typ 1e-05
COG5010257 COG5010, TadD, Flp pilus assembly protein TadD, co 1e-05
TIGR02917 899 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system 3e-05
cd00189100 cd00189, TPR, Tetratricopeptide repeat domain; typ 5e-05
pfam1341469 pfam13414, TPR_11, TPR repeat 5e-05
TIGR02917 899 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system 6e-05
TIGR02521234 TIGR02521, type_IV_pilW, type IV pilus biogenesis/ 1e-04
COG0457291 COG0457, NrfG, FOG: TPR repeat [General function p 5e-04
TIGR02917899 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system 0.001
pfam1341469 pfam13414, TPR_11, TPR repeat 0.001
cd00189100 cd00189, TPR, Tetratricopeptide repeat domain; typ 0.002
pfam1341469 pfam13414, TPR_11, TPR repeat 0.003
COG4783484 COG4783, COG4783, Putative Zn-dependent protease, 0.003
PRK11447 1157 PRK11447, PRK11447, cellulose synthase subunit Bcs 0.004
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information 
 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 81/422 (19%), Positives = 146/422 (34%), Gaps = 83/422 (19%)

Query: 154 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 213
           P+NA A   LG+     G P +A++  E A     + + ++ R +LL  + + +      
Sbjct: 394 PENAAARTQLGISKLSQGDPSEAIADLETA----AQLDPELGRADLL--LILSY------ 441

Query: 214 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 273
                      L   + ++ L+  K+  +     A + N LG I L  G L  +      
Sbjct: 442 -----------LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEK 490

Query: 274 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK---- 329
            L+++P+      NL     Q G+ + + + F+ ++  D  +  A++  A L L      
Sbjct: 491 ALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550

Query: 330 --YGSVLAGAGANTGEGACL-----------DQASAVNVAKECLLAALKADPKAAHIWAN 376
                +   A  N  E                   A+ +  E    A  A P +   W  
Sbjct: 551 EAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE----AADAAPDSPEAWLM 606

Query: 377 LANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ-------- 428
           L  A    GD   +    +K   L+P+      A+A+  + DA    +   +        
Sbjct: 607 LGRAQLAAGDLNKAVSSFKKLLALQPD-----SALALLLLADAYAVMKNYAKAITSLKRA 661

Query: 429 LSWAGNEMASILR----EGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC 484
           L    +   + +          + E   A     ++QK H + A  FE E          
Sbjct: 662 LELKPDNTEAQIGLAQLLLAAKRTES--AKKIAKSLQKQHPKAALGFELE---------- 709

Query: 485 AGAGESAFL--DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 542
              G+      D  +A+   ++    ALK  P + +    L  A   +G+   + K LE 
Sbjct: 710 ---GDLYLRQKDYPAAIQAYRK----ALKRAPSSQNA-IKLHRALLASGNTAEAVKTLEA 761

Query: 543 VL 544
            L
Sbjct: 762 WL 763

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat Back     alignment and domain information
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat Back     alignment and domain information
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat Back     alignment and domain information
>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 552
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 100.0
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 100.0
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 100.0
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 100.0
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 100.0
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 100.0
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 100.0
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 100.0
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 99.98
KOG0547606 consensus Translocase of outer mitochondrial membr 99.98
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 99.98
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 99.97
KOG1126638 consensus DNA-binding cell division cycle control 99.97
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 99.96
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 99.96
KOG1126638 consensus DNA-binding cell division cycle control 99.95
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 99.94
PRK11788389 tetratricopeptide repeat protein; Provisional 99.94
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 99.94
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 99.94
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.93
KOG0624 504 consensus dsRNA-activated protein kinase inhibitor 99.93
KOG0547606 consensus Translocase of outer mitochondrial membr 99.93
KOG2076 895 consensus RNA polymerase III transcription factor 99.93
PRK11788389 tetratricopeptide repeat protein; Provisional 99.92
KOG1129478 consensus TPR repeat-containing protein [General f 99.92
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.92
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.92
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 99.91
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.91
PRK14574 822 hmsH outer membrane protein; Provisional 99.9
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.9
KOG0495913 consensus HAT repeat protein [RNA processing and m 99.9
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 99.89
KOG2003 840 consensus TPR repeat-containing protein [General f 99.89
PRK12370553 invasion protein regulator; Provisional 99.89
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.89
KOG4162799 consensus Predicted calmodulin-binding protein [Si 99.88
PRK11189296 lipoprotein NlpI; Provisional 99.87
PRK11189296 lipoprotein NlpI; Provisional 99.87
PRK12370553 invasion protein regulator; Provisional 99.87
KOG2076 895 consensus RNA polymerase III transcription factor 99.87
KOG1125579 consensus TPR repeat-containing protein [General f 99.87
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.86
KOG2003 840 consensus TPR repeat-containing protein [General f 99.86
PRK14574 822 hmsH outer membrane protein; Provisional 99.85
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 99.85
KOG0495913 consensus HAT repeat protein [RNA processing and m 99.85
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.85
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.85
KOG1125579 consensus TPR repeat-containing protein [General f 99.85
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 99.84
KOG0550 486 consensus Molecular chaperone (DnaJ superfamily) [ 99.84
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 99.83
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.83
PLN02789320 farnesyltranstransferase 99.83
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.83
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.83
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.82
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.82
KOG1129478 consensus TPR repeat-containing protein [General f 99.81
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 99.81
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 99.8
PLN03077 857 Protein ECB2; Provisional 99.8
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.79
cd05804355 StaR_like StaR_like; a well-conserved protein foun 99.79
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.79
PLN02789320 farnesyltranstransferase 99.78
PLN03218 1060 maturation of RBCL 1; Provisional 99.78
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.77
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 99.76
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.75
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.75
PLN03218 1060 maturation of RBCL 1; Provisional 99.75
KOG1915 677 consensus Cell cycle control protein (crooked neck 99.74
COG2956 389 Predicted N-acetylglucosaminyl transferase [Carboh 99.73
KOG4162799 consensus Predicted calmodulin-binding protein [Si 99.73
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 99.72
PRK15359144 type III secretion system chaperone protein SscB; 99.71
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 99.7
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 99.69
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 99.69
PRK15359144 type III secretion system chaperone protein SscB; 99.67
PLN03077 857 Protein ECB2; Provisional 99.66
KOG3785 557 consensus Uncharacterized conserved protein [Funct 99.65
PRK10370198 formate-dependent nitrite reductase complex subuni 99.65
cd05804355 StaR_like StaR_like; a well-conserved protein foun 99.64
PRK10370198 formate-dependent nitrite reductase complex subuni 99.64
KOG2376 652 consensus Signal recognition particle, subunit Srp 99.64
PRK14720 906 transcript cleavage factor/unknown domain fusion p 99.62
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 99.62
KOG3060289 consensus Uncharacterized conserved protein [Funct 99.59
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 99.59
KOG3060289 consensus Uncharacterized conserved protein [Funct 99.58
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 99.58
KOG2376 652 consensus Signal recognition particle, subunit Srp 99.57
KOG1915 677 consensus Cell cycle control protein (crooked neck 99.57
PF12569517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 99.57
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 99.55
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 99.53
TIGR02552135 LcrH_SycD type III secretion low calcium response 99.53
TIGR02552135 LcrH_SycD type III secretion low calcium response 99.53
KOG0553304 consensus TPR repeat-containing protein [General f 99.5
KOG0553304 consensus TPR repeat-containing protein [General f 99.49
KOG2047 835 consensus mRNA splicing factor [RNA processing and 99.49
PF12569 517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 99.49
KOG1128777 consensus Uncharacterized conserved protein, conta 99.48
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 99.48
PRK04841 903 transcriptional regulator MalT; Provisional 99.48
KOG4340459 consensus Uncharacterized conserved protein [Funct 99.47
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 99.46
KOG3785557 consensus Uncharacterized conserved protein [Funct 99.45
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 99.45
PRK14720 906 transcript cleavage factor/unknown domain fusion p 99.43
KOG1128 777 consensus Uncharacterized conserved protein, conta 99.42
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 99.39
COG4783484 Putative Zn-dependent protease, contains TPR repea 99.36
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 99.35
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 99.33
KOG1941 518 consensus Acetylcholine receptor-associated protei 99.32
KOG4340459 consensus Uncharacterized conserved protein [Funct 99.3
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 99.28
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 99.27
COG4783484 Putative Zn-dependent protease, contains TPR repea 99.23
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 99.23
CHL00033168 ycf3 photosystem I assembly protein Ycf3 99.23
KOG2047 835 consensus mRNA splicing factor [RNA processing and 99.22
COG4235287 Cytochrome c biogenesis factor [Posttranslational 99.22
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 99.22
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 99.21
COG4235287 Cytochrome c biogenesis factor [Posttranslational 99.19
PRK04841 903 transcriptional regulator MalT; Provisional 99.19
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 99.18
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 99.18
PRK02603172 photosystem I assembly protein Ycf3; Provisional 99.17
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 99.16
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 99.15
PRK11906458 transcriptional regulator; Provisional 99.13
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 99.12
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 99.12
PRK10153517 DNA-binding transcriptional activator CadC; Provis 99.12
cd00189100 TPR Tetratricopeptide repeat domain; typically con 99.11
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 99.1
KOG4648 536 consensus Uncharacterized conserved protein, conta 99.1
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 99.1
cd00189100 TPR Tetratricopeptide repeat domain; typically con 99.1
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.1
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 99.09
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 99.09
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 99.09
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 99.09
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 99.08
PRK02603172 photosystem I assembly protein Ycf3; Provisional 99.05
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.05
CHL00033168 ycf3 photosystem I assembly protein Ycf3 99.05
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 99.04
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 99.03
PRK15331165 chaperone protein SicA; Provisional 99.02
PRK11906458 transcriptional regulator; Provisional 99.01
KOG4648536 consensus Uncharacterized conserved protein, conta 99.01
PRK10803263 tol-pal system protein YbgF; Provisional 98.99
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 98.98
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 98.97
PRK10153517 DNA-binding transcriptional activator CadC; Provis 98.97
KOG1941 518 consensus Acetylcholine receptor-associated protei 98.97
COG0457291 NrfG FOG: TPR repeat [General function prediction 98.96
PRK10803263 tol-pal system protein YbgF; Provisional 98.93
PF12688120 TPR_5: Tetratrico peptide repeat 98.92
PRK15331165 chaperone protein SicA; Provisional 98.9
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.88
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 98.84
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 98.83
KOG4234271 consensus TPR repeat-containing protein [General f 98.83
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 98.82
COG0457291 NrfG FOG: TPR repeat [General function prediction 98.81
COG3898 531 Uncharacterized membrane-bound protein [Function u 98.81
PF1337173 TPR_9: Tetratricopeptide repeat 98.8
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 98.8
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 98.8
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 98.79
PF12688120 TPR_5: Tetratrico peptide repeat 98.79
COG4105254 ComL DNA uptake lipoprotein [General function pred 98.77
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 98.74
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.72
COG1729262 Uncharacterized protein conserved in bacteria [Fun 98.72
KOG4234271 consensus TPR repeat-containing protein [General f 98.71
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 98.7
PF1337173 TPR_9: Tetratricopeptide repeat 98.67
COG4700251 Uncharacterized protein conserved in bacteria cont 98.67
COG1729262 Uncharacterized protein conserved in bacteria [Fun 98.66
KOG2471696 consensus TPR repeat-containing protein [General f 98.62
COG4105254 ComL DNA uptake lipoprotein [General function pred 98.61
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 98.61
PF13512142 TPR_18: Tetratricopeptide repeat 98.6
PLN03098453 LPA1 LOW PSII ACCUMULATION1; Provisional 98.6
PF06552186 TOM20_plant: Plant specific mitochondrial import r 98.57
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 98.56
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 98.56
PLN03098 453 LPA1 LOW PSII ACCUMULATION1; Provisional 98.54
PF06552186 TOM20_plant: Plant specific mitochondrial import r 98.51
COG4700251 Uncharacterized protein conserved in bacteria cont 98.5
KOG4555175 consensus TPR repeat-containing protein [Function 98.47
KOG2796366 consensus Uncharacterized conserved protein [Funct 98.46
KOG1586288 consensus Protein required for fusion of vesicles 98.46
PF13512142 TPR_18: Tetratricopeptide repeat 98.44
KOG1550552 consensus Extracellular protein SEL-1 and related 98.43
KOG4555175 consensus TPR repeat-containing protein [Function 98.4
KOG2610491 consensus Uncharacterized conserved protein [Funct 98.38
KOG2471 696 consensus TPR repeat-containing protein [General f 98.35
COG3898531 Uncharacterized membrane-bound protein [Function u 98.32
PF1342844 TPR_14: Tetratricopeptide repeat 98.28
PF1343134 TPR_17: Tetratricopeptide repeat 98.28
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 98.28
KOG3616 1636 consensus Selective LIM binding factor [Transcript 98.27
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 98.27
KOG0376 476 consensus Serine-threonine phosphatase 2A, catalyt 98.26
KOG1914 656 consensus mRNA cleavage and polyadenylation factor 98.26
KOG2300 629 consensus Uncharacterized conserved protein [Funct 98.24
KOG1550552 consensus Extracellular protein SEL-1 and related 98.24
PF04184539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 98.23
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 98.21
KOG2796366 consensus Uncharacterized conserved protein [Funct 98.2
PF1342844 TPR_14: Tetratricopeptide repeat 98.17
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 98.17
PF04184539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 98.11
PF1343134 TPR_17: Tetratricopeptide repeat 98.09
KOG1586288 consensus Protein required for fusion of vesicles 98.07
KOG1585308 consensus Protein required for fusion of vesicles 98.06
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 98.01
KOG1585308 consensus Protein required for fusion of vesicles 97.98
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 97.92
KOG0376 476 consensus Serine-threonine phosphatase 2A, catalyt 97.91
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 97.9
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 97.89
KOG2610 491 consensus Uncharacterized conserved protein [Funct 97.88
KOG0530318 consensus Protein farnesyltransferase, alpha subun 97.87
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 97.87
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 97.85
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 97.85
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 97.84
KOG4507 886 consensus Uncharacterized conserved protein, conta 97.8
PF07079 549 DUF1347: Protein of unknown function (DUF1347); In 97.79
COG3118304 Thioredoxin domain-containing protein [Posttransla 97.76
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 97.75
PF10345 608 Cohesin_load: Cohesin loading factor; InterPro: IP 97.74
PF13281374 DUF4071: Domain of unknown function (DUF4071) 97.72
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 97.71
PF03704146 BTAD: Bacterial transcriptional activator domain; 97.68
PF13281374 DUF4071: Domain of unknown function (DUF4071) 97.65
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 97.65
KOG1308377 consensus Hsp70-interacting protein Hip/Transient 97.62
COG3118304 Thioredoxin domain-containing protein [Posttransla 97.61
COG5107 660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 97.6
KOG0551390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 97.58
KOG3616 1636 consensus Selective LIM binding factor [Transcript 97.56
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 97.52
KOG0551390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 97.5
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 97.49
KOG2300629 consensus Uncharacterized conserved protein [Funct 97.48
KOG1308377 consensus Hsp70-interacting protein Hip/Transient 97.46
COG2976207 Uncharacterized protein conserved in bacteria [Fun 97.45
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 97.44
COG0790292 FOG: TPR repeat, SEL1 subfamily [General function 97.42
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 97.4
PF03704146 BTAD: Bacterial transcriptional activator domain; 97.39
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 97.39
PF04910360 Tcf25: Transcriptional repressor TCF25; InterPro: 97.37
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 97.34
KOG0530318 consensus Protein farnesyltransferase, alpha subun 97.34
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 97.3
PF04910360 Tcf25: Transcriptional repressor TCF25; InterPro: 97.27
COG2909894 MalT ATP-dependent transcriptional regulator [Tran 97.27
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 97.24
COG0790292 FOG: TPR repeat, SEL1 subfamily [General function 97.24
KOG2041 1189 consensus WD40 repeat protein [General function pr 97.22
COG2976207 Uncharacterized protein conserved in bacteria [Fun 97.15
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 97.14
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 97.12
PF10345 608 Cohesin_load: Cohesin loading factor; InterPro: IP 97.06
KOG0890 2382 consensus Protein kinase of the PI-3 kinase family 97.01
KOG3824472 consensus Huntingtin interacting protein HYPE [Gen 97.0
KOG2041 1189 consensus WD40 repeat protein [General function pr 96.99
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 96.95
KOG0890 2382 consensus Protein kinase of the PI-3 kinase family 96.89
KOG4507886 consensus Uncharacterized conserved protein, conta 96.88
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 96.83
PRK10941269 hypothetical protein; Provisional 96.81
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 96.8
KOG1258 577 consensus mRNA processing protein [RNA processing 96.76
PF1485353 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe 96.64
COG4649221 Uncharacterized protein conserved in bacteria [Fun 96.64
PF07079549 DUF1347: Protein of unknown function (DUF1347); In 96.61
PF1485353 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe 96.58
KOG1914 656 consensus mRNA cleavage and polyadenylation factor 96.55
PF04781111 DUF627: Protein of unknown function (DUF627); Inte 96.54
KOG3824472 consensus Huntingtin interacting protein HYPE [Gen 96.49
PF09986214 DUF2225: Uncharacterized protein conserved in bact 96.45
PF04781111 DUF627: Protein of unknown function (DUF627); Inte 96.4
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 96.4
KOG3783546 consensus Uncharacterized conserved protein [Funct 96.39
KOG1258 577 consensus mRNA processing protein [RNA processing 96.33
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 96.27
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 96.18
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 96.16
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 96.15
KOG2396568 consensus HAT (Half-A-TPR) repeat-containing prote 96.08
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 96.08
PF12968144 DUF3856: Domain of Unknown Function (DUF3856); Int 96.07
COG3914 620 Spy Predicted O-linked N-acetylglucosamine transfe 96.06
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 96.06
PF09986214 DUF2225: Uncharacterized protein conserved in bact 95.9
PRK13184 932 pknD serine/threonine-protein kinase; Reviewed 95.88
PRK10941269 hypothetical protein; Provisional 95.84
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 95.82
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 95.81
PRK13184932 pknD serine/threonine-protein kinase; Reviewed 95.8
PF12968144 DUF3856: Domain of Unknown Function (DUF3856); Int 95.7
KOG2422665 consensus Uncharacterized conserved protein [Funct 95.7
COG4976287 Predicted methyltransferase (contains TPR repeat) 95.68
COG4976287 Predicted methyltransferase (contains TPR repeat) 95.59
COG3914 620 Spy Predicted O-linked N-acetylglucosamine transfe 95.58
KOG0529421 consensus Protein geranylgeranyltransferase type I 95.55
PRK15180 831 Vi polysaccharide biosynthesis protein TviD; Provi 95.49
KOG18391236 consensus Uncharacterized protein CLU1/cluA/TIF31 95.38
PRK15180 831 Vi polysaccharide biosynthesis protein TviD; Provi 95.33
KOG3364149 consensus Membrane protein involved in organellar 95.27
KOG2396 568 consensus HAT (Half-A-TPR) repeat-containing prote 95.19
TIGR02561153 HrpB1_HrpK type III secretion protein HrpB1/HrpK. 95.18
KOG2422665 consensus Uncharacterized conserved protein [Funct 95.13
KOG3783546 consensus Uncharacterized conserved protein [Funct 95.11
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 94.99
KOG3364149 consensus Membrane protein involved in organellar 94.98
KOG0529421 consensus Protein geranylgeranyltransferase type I 94.92
KOG1310 758 consensus WD40 repeat protein [General function pr 94.85
COG5191435 Uncharacterized conserved protein, contains HAT (H 94.77
KOG3807556 consensus Predicted membrane protein ST7 (tumor su 94.77
KOG1310758 consensus WD40 repeat protein [General function pr 94.75
COG5107 660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 94.73
TIGR02561153 HrpB1_HrpK type III secretion protein HrpB1/HrpK. 94.66
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 94.56
COG5191 435 Uncharacterized conserved protein, contains HAT (H 94.41
COG3629280 DnrI DNA-binding transcriptional activator of the 94.36
KOG15381081 consensus Uncharacterized conserved protein WDR10, 94.32
PF1286294 Apc5: Anaphase-promoting complex subunit 5 94.29
KOG4814 872 consensus Uncharacterized conserved protein [Funct 94.05
PF1051638 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat 93.96
COG2912269 Uncharacterized conserved protein [Function unknow 93.86
COG4649221 Uncharacterized protein conserved in bacteria [Fun 93.85
KOG1839 1236 consensus Uncharacterized protein CLU1/cluA/TIF31 93.68
KOG4814 872 consensus Uncharacterized conserved protein [Funct 93.5
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 93.43
PF1051638 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat 93.17
PF0772126 TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 93.05
PF0772126 TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 93.02
PF04190260 DUF410: Protein of unknown function (DUF410) ; Int 92.92
PF1286294 Apc5: Anaphase-promoting complex subunit 5 92.41
COG3629280 DnrI DNA-binding transcriptional activator of the 92.36
PF1057980 Rapsyn_N: Rapsyn N-terminal myristoylation and lin 92.08
PF0772036 TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 91.87
PF15015569 NYD-SP12_N: Spermatogenesis-associated, N-terminal 91.86
PF11207203 DUF2989: Protein of unknown function (DUF2989); In 91.75
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 91.63
PF0772036 TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 91.62
KOG2581493 consensus 26S proteasome regulatory complex, subun 91.45
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 91.42
COG5159421 RPN6 26S proteasome regulatory complex component [ 91.12
COG2912269 Uncharacterized conserved protein [Function unknow 91.02
PF11207203 DUF2989: Protein of unknown function (DUF2989); In 90.92
PF15015569 NYD-SP12_N: Spermatogenesis-associated, N-terminal 90.72
PF1057980 Rapsyn_N: Rapsyn N-terminal myristoylation and lin 90.7
COG3947361 Response regulator containing CheY-like receiver a 90.63
smart00299140 CLH Clathrin heavy chain repeat homology. 90.32
PRK11619 644 lytic murein transglycosylase; Provisional 89.9
KOG0128 881 consensus RNA-binding protein SART3 (RRM superfami 89.79
PF10373278 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP 89.73
COG3947361 Response regulator containing CheY-like receiver a 89.44
KOG3807556 consensus Predicted membrane protein ST7 (tumor su 89.29
COG5159 421 RPN6 26S proteasome regulatory complex component [ 87.6
KOG4279 1226 consensus Serine/threonine protein kinase [Signal 87.49
PF10373278 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP 86.86
COG1747 711 Uncharacterized N-terminal domain of the transcrip 86.52
TIGR0350444 FimV_Cterm FimV C-terminal domain. This protein is 86.27
KOG4014248 consensus Uncharacterized conserved protein (conta 86.01
PF09670379 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 85.93
COG1747 711 Uncharacterized N-terminal domain of the transcrip 85.82
PF00244236 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 85.8
smart0038633 HAT HAT (Half-A-TPR) repeats. Present in several R 85.65
PF04190260 DUF410: Protein of unknown function (DUF410) ; Int 85.42
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 85.22
KOG2581 493 consensus 26S proteasome regulatory complex, subun 85.22
KOG2063877 consensus Vacuolar assembly/sorting proteins VPS39 84.73
smart0038633 HAT HAT (Half-A-TPR) repeats. Present in several R 84.49
TIGR0350444 FimV_Cterm FimV C-terminal domain. This protein is 84.36
PF12753404 Nro1: Nuclear pore complex subunit Nro1; InterPro: 84.12
COG5536328 BET4 Protein prenyltransferase, alpha subunit [Pos 84.12
PF1285434 PPR_1: PPR repeat 83.93
KOG0546372 consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos 83.52
PF10255 404 Paf67: RNA polymerase I-associated factor PAF67; I 83.25
PF12739414 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 82.94
COG4455273 ImpE Protein of avirulence locus involved in tempe 82.81
PF12739414 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 82.55
KOG1463 411 consensus 26S proteasome regulatory complex, subun 82.44
PF11817247 Foie-gras_1: Foie gras liver health family 1; Inte 82.0
PF1285434 PPR_1: PPR repeat 81.94
KOG4014248 consensus Uncharacterized conserved protein (conta 81.68
KOG0687393 consensus 26S proteasome regulatory complex, subun 81.54
PF09205161 DUF1955: Domain of unknown function (DUF1955); Int 81.12
PF1304150 PPR_2: PPR repeat family 80.83
PF10255404 Paf67: RNA polymerase I-associated factor PAF67; I 80.68
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-44  Score=331.58  Aligned_cols=363  Identities=19%  Similarity=0.205  Sum_probs=218.6

Q ss_pred             HHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCc
Q 008818           94 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP  173 (552)
Q Consensus        94 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~  173 (552)
                      +..+...|+...++ ..|..+|++.|+...+|..+|.+ ....++.+.+-+++..+++++|....+...+|.++..+|+.
T Consensus       123 aN~~kerg~~~~al-~~y~~aiel~p~fida~inla~a-l~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl  200 (966)
T KOG4626|consen  123 ANILKERGQLQDAL-ALYRAAIELKPKFIDAYINLAAA-LVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRL  200 (966)
T ss_pred             HHHHHHhchHHHHH-HHHHHHHhcCchhhHHHhhHHHH-HHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhccc
Confidence            33444455555554 55666666666666666666666 56666666666666666666666666666666666666666


Q ss_pred             hHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHH
Q 008818          174 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT  253 (552)
Q Consensus       174 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  253 (552)
                      .+|..+|.+|++..|                   ..+.++..+|-.    ...+|+.-.|+..|++++.++|+..++|.+
T Consensus       201 ~ea~~cYlkAi~~qp-------------------~fAiawsnLg~~----f~~~Gei~~aiq~y~eAvkldP~f~dAYiN  257 (966)
T KOG4626|consen  201 EEAKACYLKAIETQP-------------------CFAIAWSNLGCV----FNAQGEIWLAIQHYEEAVKLDPNFLDAYIN  257 (966)
T ss_pred             chhHHHHHHHHhhCC-------------------ceeeeehhcchH----HhhcchHHHHHHHHHHhhcCCCcchHHHhh
Confidence            666666666666532                   122222333332    344455566666666666666666666666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccc
Q 008818          254 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV  333 (552)
Q Consensus       254 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  333 (552)
                      ||.+|-..+.|++|+.+|.+|+.+.|+++.++-++|.+|..+|..+-|+..|++++++.|+.++++.+++..+.      
T Consensus       258 LGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk------  331 (966)
T KOG4626|consen  258 LGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK------  331 (966)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH------
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666665      


Q ss_pred             ccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 008818          334 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV  413 (552)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  413 (552)
                                     ..|+..+|..+|++++.+.|..+++.++||.+|..+|++++|...|+++++..|....       
T Consensus       332 ---------------d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aa-------  389 (966)
T KOG4626|consen  332 ---------------DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAA-------  389 (966)
T ss_pred             ---------------hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhh-------
Confidence                           5566666666666666666666666666666666666666666666666666666554       


Q ss_pred             HHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc--chhhhhhhhHHH
Q 008818          414 SRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESA  491 (552)
Q Consensus       414 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~  491 (552)
                                                             ++.++|.+|..+|++++|+.+|+.++.  |.-.+++.++|.
T Consensus       390 ---------------------------------------a~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGn  430 (966)
T KOG4626|consen  390 ---------------------------------------AHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGN  430 (966)
T ss_pred             ---------------------------------------hhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcch
Confidence                                                   445555555555555555555555433  333345555555


Q ss_pred             HHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818          492 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC  548 (552)
Q Consensus       492 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~  548 (552)
                      .|...|+.+.|+.+|.+|+.++|..++++.+||.+|...|+..+|+..|+++|.+-|
T Consensus       431 t~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP  487 (966)
T KOG4626|consen  431 TYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP  487 (966)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence            555555555555555555555555555555555555555555555555555555544

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length Back     alignment and domain information
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3783 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT Back     alignment and domain information
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>PRK13184 pknD serine/threonine-protein kinase; Reviewed Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>PRK13184 pknD serine/threonine-protein kinase; Reviewed Back     alignment and domain information
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT Back     alignment and domain information
>KOG2422 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional Back     alignment and domain information
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] Back     alignment and domain information
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional Back     alignment and domain information
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK Back     alignment and domain information
>KOG2422 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3783 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>PF12862 Apc5: Anaphase-promoting complex subunit 5 Back     alignment and domain information
>KOG4814 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>COG2912 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] Back     alignment and domain information
>KOG4814 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models Back     alignment and domain information
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models Back     alignment and domain information
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function Back     alignment and domain information
>PF12862 Apc5: Anaphase-promoting complex subunit 5 Back     alignment and domain information
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] Back     alignment and domain information
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane Back     alignment and domain information
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] Back     alignment and domain information
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal Back     alignment and domain information
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] Back     alignment and domain information
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2912 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed Back     alignment and domain information
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal Back     alignment and domain information
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane Back     alignment and domain information
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] Back     alignment and domain information
>smart00299 CLH Clathrin heavy chain repeat homology Back     alignment and domain information
>PRK11619 lytic murein transglycosylase; Provisional Back     alignment and domain information
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] Back     alignment and domain information
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] Back     alignment and domain information
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] Back     alignment and domain information
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] Back     alignment and domain information
>TIGR03504 FimV_Cterm FimV C-terminal domain Back     alignment and domain information
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] Back     alignment and domain information
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) Back     alignment and domain information
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] Back     alignment and domain information
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] Back     alignment and domain information
>smart00386 HAT HAT (Half-A-TPR) repeats Back     alignment and domain information
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00386 HAT HAT (Half-A-TPR) repeats Back     alignment and domain information
>TIGR03504 FimV_Cterm FimV C-terminal domain Back     alignment and domain information
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth [] Back     alignment and domain information
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12854 PPR_1: PPR repeat Back     alignment and domain information
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] Back     alignment and domain information
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] Back     alignment and domain information
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] Back     alignment and domain information
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] Back     alignment and domain information
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] Back     alignment and domain information
>PF12854 PPR_1: PPR repeat Back     alignment and domain information
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] Back     alignment and domain information
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus Back     alignment and domain information
>PF13041 PPR_2: PPR repeat family Back     alignment and domain information
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query552
1na0_A125 Design Of Stable Alpha-Helical Arrays From An Ideal 1e-04
2fo7_A136 Crystal Structure Of An 8 Repeat Consensus Tpr Supe 1e-04
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 Back     alignment and structure 
Iteration: 1

 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 22/143 (15%)
Query: 276 AVDP-NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 334
           A+DP N+ +   NLG AY++ GD +++ + +Q  +  D N+  A  N            L
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN------------L 49
Query: 335 AGAGANTGEGACLDQASAVNVAKECXXXXXXXXXXXXHIWANLANAYYLTGDHRSSGKCL 394
             A    G+          + A E               W NL NAYY  GD+  + +  
Sbjct: 50  GNAYYKQGD---------YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 100
Query: 395 EKAAKLEPNCMSTRYAVAVSRIK 417
           +KA +L+PN    +  +  ++ K
Sbjct: 101 QKALELDPNNAEAKQNLGNAKQK 123
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query552
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 4e-23
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 4e-15
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 4e-13
3ieg_A 359 DNAJ homolog subfamily C member 3; TPR motif, chap 4e-08
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 2e-22
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 4e-16
2xpi_A 597 Anaphase-promoting complex subunit CUT9; cell cycl 6e-15
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 2e-10
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 8e-10
2xpi_A 597 Anaphase-promoting complex subunit CUT9; cell cycl 6e-09
2xpi_A 597 Anaphase-promoting complex subunit CUT9; cell cycl 2e-07
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 8e-22
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 2e-15
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 1e-10
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 2e-20
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 9e-19
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 3e-17
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 2e-16
1w3b_A 388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 6e-16
4g1t_A472 Interferon-induced protein with tetratricopeptide 1e-19
4g1t_A 472 Interferon-induced protein with tetratricopeptide 2e-17
4g1t_A472 Interferon-induced protein with tetratricopeptide 2e-15
4g1t_A472 Interferon-induced protein with tetratricopeptide 2e-10
4g1t_A472 Interferon-induced protein with tetratricopeptide 8e-06
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 2e-19
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 3e-10
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 5e-07
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 8e-07
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 5e-04
2gw1_A514 Mitochondrial precursor proteins import receptor; 5e-19
2gw1_A514 Mitochondrial precursor proteins import receptor; 4e-15
2gw1_A 514 Mitochondrial precursor proteins import receptor; 4e-13
2gw1_A514 Mitochondrial precursor proteins import receptor; 1e-10
2gw1_A 514 Mitochondrial precursor proteins import receptor; 6e-10
2gw1_A 514 Mitochondrial precursor proteins import receptor; 7e-09
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 6e-19
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 1e-16
3fp2_A 537 TPR repeat-containing protein YHR117W; TOM71, mito 2e-12
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 3e-12
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 3e-08
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 1e-07
3fp2_A 537 TPR repeat-containing protein YHR117W; TOM71, mito 6e-07
3v6t_A499 DHAX3; tandem repeats, DNA specific binding protei 9e-18
3v6t_A499 DHAX3; tandem repeats, DNA specific binding protei 6e-17
3v6t_A 499 DHAX3; tandem repeats, DNA specific binding protei 1e-15
3v6t_A499 DHAX3; tandem repeats, DNA specific binding protei 6e-14
3v6t_A499 DHAX3; tandem repeats, DNA specific binding protei 8e-14
3v6t_A 499 DHAX3; tandem repeats, DNA specific binding protei 4e-05
3u4t_A272 TPR repeat-containing protein; structural genomics 1e-16
3u4t_A272 TPR repeat-containing protein; structural genomics 3e-14
3u4t_A272 TPR repeat-containing protein; structural genomics 7e-11
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 2e-16
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 1e-15
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 8e-11
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 3e-10
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 6e-10
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 1e-09
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 1e-15
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 7e-10
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 3e-09
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 5e-08
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 3e-05
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 2e-15
4abn_A 474 Tetratricopeptide repeat protein 5; P53 cofactor, 6e-10
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 1e-09
3tax_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 3e-15
3tax_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 4e-14
3tax_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 3e-12
3tax_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 2e-08
3tax_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 4e-06
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 1e-14
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 9e-14
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 5e-12
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 8e-08
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 2e-14
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 1e-11
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 7e-07
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 7e-14
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 8e-12
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 5e-11
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 3e-06
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 1e-04
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 8e-14
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 2e-12
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 1e-09
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 5e-07
1fch_A 368 Peroxisomal targeting signal 1 receptor; protein-p 6e-05
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 9e-14
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 2e-11
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 4e-09
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 4e-08
3cv0_A 327 Peroxisome targeting signal 1 receptor PEX5; TPR m 5e-06
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 2e-13
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 1e-08
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 3e-06
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 1e-05
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 2e-12
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 1e-08
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 8e-07
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 4e-12
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 2e-10
3ugm_A 1047 TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan 7e-12
3ugm_A 1047 TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan 7e-11
3ugm_A 1047 TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan 1e-10
3ugm_A 1047 TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan 1e-10
3ugm_A 1047 TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan 4e-10
3ugm_A1047 TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan 6e-09
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 7e-12
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 4e-06
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 8e-06
4eqf_A365 PEX5-related protein; accessory protein, tetratric 7e-12
4eqf_A365 PEX5-related protein; accessory protein, tetratric 5e-11
4eqf_A365 PEX5-related protein; accessory protein, tetratric 8e-11
4eqf_A365 PEX5-related protein; accessory protein, tetratric 2e-10
4eqf_A365 PEX5-related protein; accessory protein, tetratric 2e-10
4eqf_A365 PEX5-related protein; accessory protein, tetratric 2e-09
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 1e-11
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 2e-09
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 2e-11
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 5e-11
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 7e-09
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 2e-08
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 8e-06
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 2e-11
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 4e-06
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 5e-06
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 3e-11
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 1e-10
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 2e-10
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 4e-10
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 9e-10
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 4e-09
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 2e-05
3q15_A378 PSP28, response regulator aspartate phosphatase H; 5e-10
3q15_A378 PSP28, response regulator aspartate phosphatase H; 6e-06
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 2e-09
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 3e-07
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 4e-09
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 1e-08
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 5e-08
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 6e-08
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 8e-08
2kat_A115 Uncharacterized protein; NESG, structure, structur 9e-08
2kat_A115 Uncharacterized protein; NESG, structure, structur 3e-04
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 2e-07
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 3e-07
3k9i_A117 BH0479 protein; putative protein binding protein, 2e-06
3k9i_A117 BH0479 protein; putative protein binding protein, 1e-04
3k9i_A117 BH0479 protein; putative protein binding protein, 5e-04
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 2e-06
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 5e-06
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 4e-06
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 1e-04
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 2e-04
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 8e-04
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 1e-05
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 2e-04
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 2e-05
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 1e-04
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 4e-05
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 6e-05
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 8e-05
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 1e-04
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 4e-04
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 6e-04
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 7e-04
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 Back     alignment and structure
 Score =  100 bits (250), Expect = 4e-23
 Identities = 34/254 (13%), Positives = 80/254 (31%), Gaps = 21/254 (8%)

Query: 154 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 213
                A    G +  + G+  +A   ++K   +         +     LV+    Q L  
Sbjct: 68  MDFTAARLQRGHLLLKQGKLDEAEDDFKKV--LKSNPSEQEEKEAESQLVKADEMQRLR- 124

Query: 214 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 273
                +      +  +    ++ L + ++     A +        +K G  + +IS L +
Sbjct: 125 -----SQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179

Query: 274 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 333
              +  +N +    +   Y+Q GD E S    ++ +  DQ+H     +Y  +        
Sbjct: 180 ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN---- 235

Query: 334 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA----NLANAYYLTGDHRS 389
                        L +      A     + +K +P  A         + + +        
Sbjct: 236 -----KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290

Query: 390 SGKCLEKAAKLEPN 403
           + +   +  ++EP+
Sbjct: 291 AIRICSEVLQMEPD 304
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 Back     alignment and structure
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 Back     alignment and structure
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 Back     alignment and structure
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 Back     alignment and structure
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 Back     alignment and structure
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 Back     alignment and structure
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 Back     alignment and structure
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 Back     alignment and structure
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 Back     alignment and structure
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 Back     alignment and structure
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 Back     alignment and structure
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query552
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 100.0
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 100.0
2gw1_A514 Mitochondrial precursor proteins import receptor; 100.0
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 100.0
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 100.0
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 100.0
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 100.0
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 100.0
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 100.0
4g1t_A472 Interferon-induced protein with tetratricopeptide 100.0
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 100.0
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 100.0
2gw1_A514 Mitochondrial precursor proteins import receptor; 100.0
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.97
4g1t_A472 Interferon-induced protein with tetratricopeptide 99.97
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 99.97
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.97
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.97
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.97
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.97
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.97
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.96
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.96
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.96
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 99.95
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.95
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 99.95
3u4t_A272 TPR repeat-containing protein; structural genomics 99.95
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.95
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.95
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 99.94
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 99.94
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.94
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.94
3u4t_A272 TPR repeat-containing protein; structural genomics 99.94
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.94
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.94
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.93
4abn_A 474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.93
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.93
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 99.93
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.93
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.93
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.93
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.92
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 99.92
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.92
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.92
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.92
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.92
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.91
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.91
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 99.91
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.91
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.91
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.91
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.91
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.91
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.9
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.9
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.9
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 99.9
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.9
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.9
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.89
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.89
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 99.87
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 99.87
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 99.86
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 99.86
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.86
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 99.86
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.86
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 99.86
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 99.86
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 99.85
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.84
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.84
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.84
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.84
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 99.84
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.84
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 99.83
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 99.83
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 99.83
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 99.83
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.82
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.82
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 99.82
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 99.82
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 99.81
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.81
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 99.8
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 99.8
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 99.79
1b89_A449 Protein (clathrin heavy chain); triskelion, coated 99.78
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 99.78
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 99.78
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 99.78
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 99.78
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 99.77
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 99.77
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 99.77
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 99.77
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 99.76
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 99.76
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 99.76
1b89_A 449 Protein (clathrin heavy chain); triskelion, coated 99.76
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 99.74
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 99.73
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 99.73
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.72
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.72
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 99.71
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 99.71
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.71
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 99.7
4e6h_A 679 MRNA 3'-END-processing protein RNA14; HAT domain, 99.7
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 99.69
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 99.69
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 99.69
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 99.69
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 99.68
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 99.68
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 99.67
4e6h_A 679 MRNA 3'-END-processing protein RNA14; HAT domain, 99.67
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 99.66
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 99.66
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 99.65
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 99.65
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 99.64
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 99.64
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 99.64
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 99.64
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 99.63
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 99.63
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 99.63
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.62
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.62
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 99.62
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 99.61
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 99.61
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 99.6
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 99.6
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 99.58
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 99.58
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 99.57
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.57
3q49_B137 STIP1 homology and U box-containing protein 1; E3 99.57
3u3w_A293 Transcriptional activator PLCR protein; ternary co 99.57
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 99.57
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 99.57
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 99.56
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 99.56
3u3w_A293 Transcriptional activator PLCR protein; ternary co 99.55
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 99.55
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 99.55
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 99.55
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 99.55
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 99.54
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 99.52
3q49_B137 STIP1 homology and U box-containing protein 1; E3 99.52
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 99.52
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 99.52
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 99.51
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 99.51
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 99.51
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 99.5
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 99.5
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 99.49
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 99.49
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 99.48
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 99.48
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 99.48
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 99.48
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 99.47
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 99.47
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 99.46
3k9i_A117 BH0479 protein; putative protein binding protein, 99.46
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 99.45
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 99.44
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 99.44
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 99.43
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 99.42
3k9i_A117 BH0479 protein; putative protein binding protein, 99.42
4b4t_Q 434 26S proteasome regulatory subunit RPN6; hydrolase, 99.41
2uy1_A 493 Cleavage stimulation factor 77; RNA-binding protei 99.39
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 99.39
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 99.39
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 99.38
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 99.35
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 99.27
2kat_A115 Uncharacterized protein; NESG, structure, structur 99.25
2l6j_A111 TPR repeat-containing protein associated with HSP; 99.22
2kat_A115 Uncharacterized protein; NESG, structure, structur 99.2
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 99.2
2l6j_A111 TPR repeat-containing protein associated with HSP; 99.18
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 99.13
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 99.11
1klx_A138 Cysteine rich protein B; structural genomics, heli 99.09
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 99.05
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 99.04
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 99.0
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 98.98
1klx_A138 Cysteine rich protein B; structural genomics, heli 98.98
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 98.98
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 98.97
1pc2_A152 Mitochondria fission protein; unknown function; NM 98.9
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 98.86
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 98.85
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 98.84
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 98.81
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 98.69
1pc2_A152 Mitochondria fission protein; unknown function; NM 98.65
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 98.6
3qww_A433 SET and MYND domain-containing protein 2; methyltr 98.57
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 98.41
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 98.4
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 98.39
4g26_A 501 Pentatricopeptide repeat-containing protein AT2G3 98.39
3qww_A433 SET and MYND domain-containing protein 2; methyltr 98.35
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 98.3
4g26_A 501 Pentatricopeptide repeat-containing protein AT2G3 98.25
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 98.07
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 97.89
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 97.88
3o48_A134 Mitochondria fission 1 protein; tetratricopeptide 97.75
1y8m_A144 FIS1; mitochondria, unknown function; NMR {Sacchar 97.74
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 97.53
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 97.45
3o48_A134 Mitochondria fission 1 protein; tetratricopeptide 97.25
1y8m_A144 FIS1; mitochondria, unknown function; NMR {Sacchar 97.16
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 97.07
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 96.57
3txn_A 394 26S proteasome regulatory complex subunit P42B; PC 96.55
1zbp_A273 Hypothetical protein VPA1032; alpha-beta protein, 96.22
3kae_A242 CDC27, possible protein of nuclear scaffold; tetra 96.17
4gns_B 754 Protein CSD3, chitin biosynthesis protein CHS6; FN 96.16
1qsa_A 618 Protein (soluble lytic transglycosylase SLT70); al 96.15
4gns_B 754 Protein CSD3, chitin biosynthesis protein CHS6; FN 96.08
1zbp_A273 Hypothetical protein VPA1032; alpha-beta protein, 95.94
4b4t_P 445 26S proteasome regulatory subunit RPN5; hydrolase, 95.85
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 95.76
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 95.71
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 95.69
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 95.5
1ya0_A497 SMG-7 transcript variant 2; alpha-helical repeat, 95.43
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 94.64
3kae_A242 CDC27, possible protein of nuclear scaffold; tetra 94.63
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 94.35
4fhn_B1139 Nucleoporin NUP120; protein complex,structural pro 94.08
1ya0_A497 SMG-7 transcript variant 2; alpha-helical repeat, 93.98
4b4t_P 445 26S proteasome regulatory subunit RPN5; hydrolase, 93.56
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 93.45
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 92.73
4b4t_S523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 92.71
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 92.34
1qsa_A 618 Protein (soluble lytic transglycosylase SLT70); al 92.3
4b4t_S523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 91.76
4fhn_B1139 Nucleoporin NUP120; protein complex,structural pro 90.07
2wpv_A312 GET4, UPF0363 protein YOR164C; golgi-ER traffickin 89.94
3lpz_A336 GET4 (YOR164C homolog); protein targeting, tail-an 86.69
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 86.56
1wy6_A172 Hypothetical protein ST1625; helical repeat protei 85.47
3lvg_A 624 Clathrin heavy chain 1; SELF assembly, coated PIT, 83.09
2wpv_A312 GET4, UPF0363 protein YOR164C; golgi-ER traffickin 81.0
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
Probab=100.00  E-value=2.6e-40  Score=324.01  Aligned_cols=380  Identities=19%  Similarity=0.183  Sum_probs=256.4

Q ss_pred             HHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCc
Q 008818           94 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP  173 (552)
Q Consensus        94 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~  173 (552)
                      +..+++.|+...++ ..+.++++..|++...+..+|.. ....+.++.+...+..+++.+|.++.+|+.+|.+|...|++
T Consensus         6 a~~~~~~g~~~~A~-~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~   83 (388)
T 1w3b_A            6 AHREYQAGDFEAAE-RHCMQLWRQEPDNTGVLLLLSSI-HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence            55667777777775 77778888888877777777777 67777788888888888888888888888888888888888


Q ss_pred             hHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHH
Q 008818          174 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT  253 (552)
Q Consensus       174 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  253 (552)
                      ++|+..|++++++.|+.            ...+..++.++...|+.           ++|+..|+++++.+|++..++..
T Consensus        84 ~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~g~~-----------~~A~~~~~~al~~~p~~~~~~~~  140 (388)
T 1w3b_A           84 QEAIEHYRHALRLKPDF------------IDGYINLAAALVAAGDM-----------EGAVQAYVSALQYNPDLYCVRSD  140 (388)
T ss_dssp             HHHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHHSCS-----------SHHHHHHHHHHHHCTTCTHHHHH
T ss_pred             HHHHHHHHHHHHcCcch------------HHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHhCCCcHHHHHH
Confidence            88888888888775543            12334445554444443           88888888888888888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccc
Q 008818          254 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV  333 (552)
Q Consensus       254 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  333 (552)
                      +|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++++|++..++..+|.++.      
T Consensus       141 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~------  214 (388)
T 1w3b_A          141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK------  214 (388)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH------
Confidence            88888888888888888888888888888888888888888888888888888888888888888877777776      


Q ss_pred             ccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 008818          334 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV  413 (552)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  413 (552)
                                     ..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.
T Consensus       215 ---------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  279 (388)
T 1w3b_A          215 ---------------EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLAN  279 (388)
T ss_dssp             ---------------TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred             ---------------HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence                           77788888888888888888888888888888888888888888888888887776655544444


Q ss_pred             HHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc--chhhhhhhhHHH
Q 008818          414 SRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESA  491 (552)
Q Consensus       414 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~  491 (552)
                      .....        ..+..+...+...+..    .|.++.++..+|.++...|++++|+..+.+.+.  +....+++.+|.
T Consensus       280 ~~~~~--------g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  347 (388)
T 1w3b_A          280 ALKEK--------GSVAEAEDCYNTALRL----CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS  347 (388)
T ss_dssp             HHHHH--------SCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             HHHHc--------CCHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            32211        0111111111122111    233444555555555555555555555555433  222344445555


Q ss_pred             HHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 008818          492 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG  531 (552)
Q Consensus       492 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  531 (552)
                      ++...|++++|+..|+++++++|+++.+++.+|.++..+|
T Consensus       348 ~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          348 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence            5555555555555555555555555555555555554444
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Back     alignment and structure
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Back     alignment and structure
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Back     alignment and structure
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} Back     alignment and structure
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} Back     alignment and structure
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A Back     alignment and structure
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 Back     alignment and structure
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A Back     alignment and structure
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 552
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 1e-16
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 2e-14
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 3e-14
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 4e-14
d1w3ba_ 388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 2e-09
d1zbpa1264 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V 3e-11
d1zbpa1264 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V 0.001
d1ya0a1 497 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T 4e-11
d1ya0a1497 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T 7e-08
d1ya0a1 497 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T 1e-06
d1ya0a1497 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T 2e-06
d1ya0a1 497 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T 0.001
d1dcea1334 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr 2e-09
d1dcea1334 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr 1e-05
d1fcha_323 a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting 8e-09
d1fcha_323 a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting 9e-06
d1fcha_323 a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting 1e-05
d1fcha_ 323 a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting 0.001
d1xnfa_259 a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli 1e-07
d1xnfa_259 a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli 0.001
d1hz4a_366 a.118.8.2 (A:) Transcription factor MalT domain II 4e-07
d1hz4a_366 a.118.8.2 (A:) Transcription factor MalT domain II 0.002
d1hh8a_192 a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- 2e-06
d2h6fa1315 a.118.6.1 (A:55-369) Protein farnesyltransferase a 6e-06
d2pqrb1124 a.118.8.1 (B:5-128) Mitochondria fission protein F 5e-05
d1qqea_290 a.118.8.1 (A:) Vesicular transport protein sec17 { 4e-04
d1elra_128 a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 8e-04
d1kt1a1168 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M 0.002
d1kt1a1168 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M 0.003
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.7 bits (195), Expect = 1e-16
 Identities = 40/268 (14%), Positives = 86/268 (32%), Gaps = 46/268 (17%)

Query: 153 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 212
            P  A A   LG ++   G+   A+  +EKA  +    + +      ++L  +       
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDA-YINLGNVLKEA--- 216

Query: 213 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLS 272
                             +  ++    ++      AVV   L  +  + G +  +I    
Sbjct: 217 ---------------RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261

Query: 273 SLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 332
             + + P+  D   NL  A  + G + ++  C+   +     H  +L N A +       
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR----- 316

Query: 333 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 392
                           +   +  A      AL+  P+ A   +NLA+     G  + +  
Sbjct: 317 ----------------EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360

Query: 393 CLEKAAKLEPNCMSTRY--AVAVSRIKD 418
             ++A ++ P            +  ++D
Sbjct: 361 HYKEAIRISPTFADAYSNMGNTLKEMQD 388
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query552
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 100.0
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 100.0
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.96
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.95
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.93
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.92
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.89
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.89
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.89
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.86
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.86
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.83
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.71
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.71
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.7
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 99.69
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.69
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.68
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.67
d1ya0a1 497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 99.67
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 99.65
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.65
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.64
d1ya0a1497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 99.64
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 99.61
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 99.6
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.59
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.57
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 99.57
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 99.56
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.56
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.54
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 99.53
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 99.53
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.52
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 99.52
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 99.52
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 99.5
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 99.49
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 99.49
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 99.48
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 99.48
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 99.47
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.41
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 99.21
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 99.18
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 99.15
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 99.12
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 99.11
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 99.03
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 99.02
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 98.9
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 98.49
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 98.26
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 98.26
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 98.24
d1qsaa1450 70 KDa soluble lytic transglycosylase (SLT70), sup 96.19
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 96.18
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 94.27
d1qsaa1450 70 KDa soluble lytic transglycosylase (SLT70), sup 92.9
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=287.97  Aligned_cols=366  Identities=17%  Similarity=0.190  Sum_probs=297.3

Q ss_pred             hHHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 008818           93 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ  172 (552)
Q Consensus        93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~  172 (552)
                      -+...++.|++..++ ..|.++++.+|++...+..+|.+ +...+.++.|...++++++.+|+++.+|..+|.+|..+|+
T Consensus         5 la~~~~~~G~~~~A~-~~~~~~l~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           5 LAHREYQAGDFEAAE-RHCMQLWRQEPDNTGVLLLLSSI-HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence            466788899998887 99999999999999999999999 8899999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccc----------c-ccCCC-----ccccccCchhHHHHHHH
Q 008818          173 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP----------E-SSGDN-----SLDKELEPEELEEILSK  236 (552)
Q Consensus       173 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~g~~-----~~~~~~~~~~~~~A~~~  236 (552)
                      +++|+..+.++++..|......     ..............          . .....     ........+....+...
T Consensus        83 ~~~A~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPDFIDGY-----INLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAC  157 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHH-----HHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             cccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccchhhhhHHH
Confidence            9999999999999865432110     00000000000000          0 00000     00112344555777777


Q ss_pred             HHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008818          237 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP  316 (552)
Q Consensus       237 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  316 (552)
                      +.+.+...|+++.++..+|.++...|++++|+..+++++.++|++..++..+|.++...|++++|+..|++++...|...
T Consensus       158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  237 (388)
T d1w3ba_         158 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA  237 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008818          317 AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK  396 (552)
Q Consensus       317 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  396 (552)
                      ..+..+|.++.                     ..|++++|+..|+++++++|+++.++..+|.++...|++++|+..|++
T Consensus       238 ~~~~~l~~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  296 (388)
T d1w3ba_         238 VVHGNLACVYY---------------------EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT  296 (388)
T ss_dssp             HHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            88888887777                     788888888888888888888888888888888888888888888888


Q ss_pred             HHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHh
Q 008818          397 AAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEEN  476 (552)
Q Consensus       397 al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  476 (552)
                      ++...|.+.                                              ..+..++.++...|++++|+..+++
T Consensus       297 ~~~~~~~~~----------------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~  330 (388)
T d1w3ba_         297 ALRLCPTHA----------------------------------------------DSLNNLANIKREQGNIEEAVRLYRK  330 (388)
T ss_dssp             HHHHCTTCH----------------------------------------------HHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             hhccCCccc----------------------------------------------hhhhHHHHHHHHCCCHHHHHHHHHH
Confidence            888777653                                              4667778889999999999999999


Q ss_pred             hhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 008818          477 ELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD  532 (552)
Q Consensus       477 ~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  532 (552)
                      ++.  |....+++.+|.++...|++++|+.+|+++++++|+++.+|.++|.+|..+||
T Consensus       331 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            765  55667899999999999999999999999999999999999999999999886
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure