Citrus Sinensis ID: 008869

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550
Protein Sequence
MDTEKPSSSKKKKKTIEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEcccccHHHcHHHHHHHHcccccEEEccccccccccccccccccEEEcccccccccccccccccccEEEEEEcccccccEEEcccccccccccccccccccccccccccHHHHHccccccccccccccccEEEEcccccccHHHHHHHHHHHcccccEEEEccccccccccccccccccccccccccEEEEEEccccccccccccEEEEEEEccccccccccEEEEEEEEcccccccEEEcccccccccccHHHHHHcccHHHcccccccEEEEEEccccccccccccEEEEEEEEcccccccccEEEEEEcccccccEEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEEccccccccccccccHHHHHHHcccccEEcccccccccccccccccccccccccccccEEEEEcEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHcHHHHHHHHHHHccHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHccccccEEEEEcccEEEcccccccccEEEEccccccccccccHHHccccEEEEEEEEccccEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccHHHHHcccccccccEEEEccccccEEEccccccccccccccccccEEEEEEEcccccccccccEEEEHEEEcccccccccEEEEEEEEEcccccEEEEEccccccccccHHHHHHHHcHHHHHHccccEEEEEEEccHcccccccccHHHHEEEEccccccccEEEEEccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccEEEEEEEccccccccccccccccHHHHHHcccccEEEEEEccccccccEcccccccccccccccEEEEEEEEEEEEEEccccccc
Coil and Loop (DISEMBL)
mdtekpssskkkkktieisSLADCEDVLHNILsrlpaksfasAACVNKSWncvcnsilsrpriasacsfkasaPIALQEVLDKVllepirphfaianvgrgfnMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFRevkfqdhedigvnrgictcgqqsgivltvgylpglkvdaipllrrkevpvddtyvdvylappvpmidQFVMDIQNyttsvsgcaspvgiimfgkedmdqkpiIEKLDYAMSMNTVFvgdersrfayrsgddlrnvcgnpafISDAVALVFasdkdkphgtgeIQFHLAMSegvsaigprhkaVSVRAnhaegstwltakreghhvilDGEQILRHIDQLENRFPQVELYVGVTkrrkcsigsekSRLITTLAFhgirggdqeylyvdgvgiktgdyfqfyqpDHNAALAACRNASENirnlklnssgkgflgrrdvansidrkeVLGGFIFsccgrgnsffgglnvdsfpffenfpsaplagifcggeigrgklsmtgqesqeespaerrYLHVYSTAYLVISYSAAPSE
Flexible Loop (DISEMBL)
mdtekpssskkkkktieisslaDCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFaianvgrgfnMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLlrrkevpvddtYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLenrfpqvelyvgvtkrrkcsigseksrlITTLafhgirggdQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRnlklnssgkgflgrrDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE
Low Complexity Region (SEG)
MDtekpssskkkkktieissLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE
Disordered region (IsUnstruct)
********************LADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDK****GTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGR******************RYLHVYSTAYLVISY******
Disordered Region (DISOPRED)
*********************ADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERS************VCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQIL**********PQVELYVGVTKR**********RLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGK****************VLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQ*****SPAERRYLHVYSTAYLVI*YS*****
Disordered Region (DISEMBL)
****************EISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKL*************ERRYLHVYSTAYLVISYSAAPSE
Disordered Region (DISPRO)
**************TIEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTEKPSSSKKKKKTIEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	550	2.2.26 [Sep-21-2011]
Q9FMV0	529	F-box/LRR-repeat protein	yes	no	0.92	0.956	0.438	1e-114

>sp|Q9FMV0|FBL91_ARATH F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana GN=At5g63520 PE=2 SV=1

 Score =  411 bits (1056), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 245/559 (43%), Positives = 330/559 (59%), Gaps = 53/559 (9%)

Query: 1   MDTEKPSSSKKKKKT-----IEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCN 55
           M T+  S + KK KT     + I+++   ED+LHNIL RLPAKSFA A+CVN+ W+ VCN
Sbjct: 11  MTTKGKSENSKKMKTDMADMVPIAAMN--EDLLHNILLRLPAKSFAFASCVNRFWSSVCN 68

Query: 56  SILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFLVKHL 115
            ILSRP++ SA S       A +EVLDKVL EPIRP F IAN+  G NM  TL  + + +
Sbjct: 69  RILSRPKMISAFSRNPDQLRAGEEVLDKVLSEPIRPQFVIANITCG-NMEETLTLITERV 127

Query: 116 GLRTPIILSVVHGVMGRDALTDEFREVKFQ---DHEDIGVNRGICTCGQQSGIVLTVGYL 172
           G R PII+SVV G++G++A  D+  EV+     D E   V            I+LT+GYL
Sbjct: 128 GSRVPIIVSVVTGILGKEACNDKAGEVRLHSTSDDELFDV--------ANFAILLTIGYL 179

Query: 173 PGLKVDAIPLLRRKEVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSG-CASPVGIIM 231
           PG+KVD IP+++ K                  M D+FVMDI+NY + VSG  A+P  +I+
Sbjct: 180 PGMKVDIIPVIQAKG------------ESGAEMEDKFVMDIRNYMSMVSGHAAAPACLIL 227

Query: 232 FGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFA 291
           F ++    +P++ KLDYAM   TV VG +   F ++ G++ RNV      I     L+FA
Sbjct: 228 FAEDTHATEPVLHKLDYAMPAETVIVGGQIGEFLHKRGNEPRNVQLQKDDIRVLAGLIFA 287

Query: 292 SDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEG--STWLTAKREGHHVILDG 349
            D+ +P     IQF  A+S G+S++  R+KA +V  +      ST LTAKR G   +LDG
Sbjct: 288 RDRHRPAQAERIQFDTAISNGMSSVDLRYKAANVNVSLGPSCPSTLLTAKRRGEAEVLDG 347

Query: 350 EQILRHIDQ-LENRFPQVELYVGVTKRRKCSIG-SEKSRLITTLAFHGIRGGDQEYLYVD 407
           +QIL  ID  LEN   + + Y+GV KRRK SIG  EK +++++L FH + G D + L VD
Sbjct: 348 DQILDDIDNILENYIWENDSYLGVIKRRKYSIGLEEKPKIMSSLVFHQVNGSDDQDLLVD 407

Query: 408 GVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLG 467
           G GIKTGD FQ Y PD   A AA  + S  +RNLK               +  ++ EV+G
Sbjct: 408 GAGIKTGDQFQVYLPDLKVAEAALNDVSAQLRNLK---------------SKPNKPEVVG 452

Query: 468 GFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPA 527
           GF F    RG+SFFG  N DS PF ENFP  P  GIFC GEIGR  +   G+E +E S  
Sbjct: 453 GFAFVGSCRGDSFFGCPNADSSPFLENFPELPFGGIFCDGEIGRSLILEEGEEKKEVSI- 511

Query: 528 ERRYLHVYSTAYLVISYSA 546
            +R+LHVYS+ YL++SY++
Sbjct: 512 -QRFLHVYSSVYLIVSYTS 529

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	550
224136205	533	f-box family protein [Populus trichocarp	0.947	0.977	0.549	1e-163
359491092	527	PREDICTED: F-box/LRR-repeat protein At5g	0.925	0.965	0.545	1e-158
147863571	527	hypothetical protein VITISV_019403 [Viti	0.925	0.965	0.543	1e-157
224122060	551	predicted protein [Populus trichocarpa]	0.938	0.936	0.526	1e-155
255540189	523	conserved hypothetical protein [Ricinus	0.930	0.978	0.526	1e-150
118488987	533	unknown [Populus trichocarpa x Populus d	0.945	0.975	0.518	1e-146
224118086	530	predicted protein [Populus trichocarpa]	0.945	0.981	0.521	1e-146
224115878	558	predicted protein [Populus trichocarpa]	0.927	0.913	0.502	1e-140
356516535	540	PREDICTED: F-box/LRR-repeat protein At5g	0.907	0.924	0.504	1e-136
224115874	637	predicted protein [Populus trichocarpa]	0.84	0.725	0.525	1e-132

>gi|224136205|ref|XP_002322271.1| f-box family protein [Populus trichocarpa] gi|222869267|gb|EEF06398.1| f-box family protein [Populus trichocarpa]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 301/548 (54%), Positives = 388/548 (70%), Gaps = 27/548 (4%)

Query: 4   EKPSSSKKKKKTIEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRI 63
           EKP    K+ KT   S  +  ED++ NIL RLPA SFASAACV+KSWN +CN IL +P+ 
Sbjct: 7   EKP----KEPKTPMTSFASINEDLILNILKRLPALSFASAACVSKSWNQICNQILYKPKF 62

Query: 64  ASACSFKASAPIALQEVLDKVLLEPIRPHFAIANV-GRGFNMRRTLDFLVKHLGLRTPII 122
           ASA S      +AL+EV++KVL EPIRPHFAIANV G G ++   L+FL   LG +TPII
Sbjct: 63  ASAFSLNPDEKVALEEVVNKVLSEPIRPHFAIANVIGSGVDLSERLNFLATKLGFQTPII 122

Query: 123 LSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPL 182
           +S   G+MGRDA+TDE REV  +++   G +         +GI+LTVG+LPGLKVDAIPL
Sbjct: 123 VSCTSGIMGRDAVTDEHREVMLEEYWVDGESNPC------NGIILTVGFLPGLKVDAIPL 176

Query: 183 LRRKEVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPI 242
            + ++                 M+D FVMDI++Y TS+SGCASPVGIIMFG ED DQKP+
Sbjct: 177 FQPRK------------GCRATMVDNFVMDIKDYATSISGCASPVGIIMFGDEDADQKPV 224

Query: 243 IEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGE 302
           +EKLD+AMS +T+ +GDER++F YR+G + RN   +  + S AVALVFA D+DKP GTGE
Sbjct: 225 MEKLDHAMSSDTIIIGDERAQFLYRNGVESRNDYESSEYFSAAVALVFARDRDKPCGTGE 284

Query: 303 IQFHLAMSEGVSAIGPRHKAVSVR--ANHAEGSTWLTAKREGHHVILDGEQILRHID-QL 359
           IQFH A+S GVSA+GPR+KAVSV+   +    +TWLTA+REG H I DG++IL  I+ +L
Sbjct: 285 IQFHAALSSGVSAVGPRYKAVSVKKIVSGTGHTTWLTARREGEHEIQDGQRILDDINNEL 344

Query: 360 ENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQF 419
            N+    +LY+GVT++R+C IGS+KSR++T L FHG+ GGDQEYL+ DGVGI+TGDYFQF
Sbjct: 345 VNQVGHPDLYIGVTEQRRCFIGSQKSRVMTFLVFHGVMGGDQEYLFADGVGIRTGDYFQF 404

Query: 420 YQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNS 479
           Y PD +AAL++C N S+N RNL L+ S +  L  R V +++  KE++GGF+FSCCGRG S
Sbjct: 405 YHPDPSAALSSCSNVSKNFRNLNLDWSSRNCLHARGVYDNVCNKELVGGFVFSCCGRGES 464

Query: 480 FFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAY 539
           FF   NVDS PF +NFP  P+AGIFC GEIGRG       E QEE  +    LHVYS  Y
Sbjct: 465 FFERCNVDSSPFLDNFPGFPMAGIFCRGEIGRGFSVFNADEGQEERTS-HCCLHVYSAVY 523

Query: 540 LVISYSAA 547
           L++SY+ A
Sbjct: 524 LLVSYTPA 531

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491092|ref|XP_002283895.2| PREDICTED: F-box/LRR-repeat protein At5g63520-like [Vitis vinifera] gi|297734433|emb|CBI15680.3| unnamed protein product [Vitis vinifera]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 289/530 (54%), Positives = 363/530 (68%), Gaps = 21/530 (3%)

Query: 25  EDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKV 84
           ED+L NILSRLPA SFA+A CV++SW      +LSRP++ASA S   S   A++EVLD V
Sbjct: 14  EDLLQNILSRLPALSFANAGCVSRSWRRAAGDVLSRPKLASAISLNPSFQDAVKEVLDSV 73

Query: 85  LLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKF 144
           L  PIRPHFAIA +G  F++ RT   + K LG  TP+I SV  G++G DA+T+EF+EVK+
Sbjct: 74  LSRPIRPHFAIACIGLKFSLERTHKLITKKLGSATPVITSVARGIIGSDAITEEFKEVKW 133

Query: 145 Q-DHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEVPVDDTYVDVYLAPPV 203
             D ED  +        +  GIVL VG++PGLKVDAIPLLR  E             P +
Sbjct: 134 GVDVEDFNL-----PANKDRGIVLIVGFMPGLKVDAIPLLRELE------------EPGI 176

Query: 204 PMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSR 263
            +ID+FVMDI+N++ +VSGC SP GI+MFG +  D KP++EK+DYAMSM TV +G+E   
Sbjct: 177 SLIDKFVMDIRNFSAAVSGCTSPTGIVMFGDKHADMKPVLEKMDYAMSMETVILGEESGH 236

Query: 264 FAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKA- 322
           F YRSGDD RN+ G+     D VALVFA D DKP G GE QFH+A+S GV  +GP HKA 
Sbjct: 237 FMYRSGDDSRNISGSLKNSCDGVALVFARDNDKPQGVGETQFHVALSTGVVPVGPTHKAA 296

Query: 323 -VSVRANHAEGSTWLTAKREGHHVILDGEQILRHI-DQLENRFPQVELYVGVTKRRKCSI 380
            V V+ + +E STWLTA++EG    LDGE++L  I D++EN     +LY+GVTKRRKCSI
Sbjct: 297 SVKVKGDGSERSTWLTARKEGLKEALDGERLLHDIYDEMENENASHDLYIGVTKRRKCSI 356

Query: 381 GSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRN 440
           GSEK R +TTL FH + GGD+EYL+VDGVGIKTGD F+FY+ D + AL++CR+ SE  RN
Sbjct: 357 GSEKVRWVTTLEFHDVLGGDEEYLFVDGVGIKTGDPFRFYRSDSDTALSSCRHVSEEFRN 416

Query: 441 LKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPL 500
           LK   + K     R VA+  D+ EV GG IFSC GRG+SFFG  NVDS PF ENFP  PL
Sbjct: 417 LKQAWTHKNSYHFRGVADGGDKTEVCGGIIFSCYGRGDSFFGQANVDSSPFLENFPGFPL 476

Query: 501 AGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE 550
           AGI CGGEIGR  LS    +  +E  + R YLH YST YLVIS++ +  E
Sbjct: 477 AGIMCGGEIGRVHLSSADHQGGQEESSPRSYLHYYSTVYLVISHTPSSLE 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147863571|emb|CAN79767.1| hypothetical protein VITISV_019403 [Vitis vinifera]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/530 (54%), Positives = 362/530 (68%), Gaps = 21/530 (3%)

Query: 25  EDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKV 84
           ED+L NILSRLPA SFA+A CV++SW      +LSRP++ASA S   S   A++EVLD V
Sbjct: 14  EDLLQNILSRLPALSFANAGCVSRSWRRAAGDVLSRPKLASAISLNPSFQDAVKEVLDSV 73

Query: 85  LLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKF 144
           L  PIRPHFAIA +G  F++ RT   + K LG  TP+I SV  G++G DA+T+EF+EVK+
Sbjct: 74  LSRPIRPHFAIACIGLKFSLERTHKLITKKLGSATPVITSVARGIIGSDAITEEFKEVKW 133

Query: 145 Q-DHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEVPVDDTYVDVYLAPPV 203
             D ED  +        +  GIVL VG++PGLKVDAIPLLR  E             P +
Sbjct: 134 GVDVEDFNL-----PANKDRGIVLIVGFMPGLKVDAIPLLRELE------------EPGI 176

Query: 204 PMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSR 263
            +ID+FVMDI+N++ +VSGC SP GI+MFG +  D KP++EK+DYAMSM TV +G+E   
Sbjct: 177 SLIDKFVMDIRNFSAAVSGCTSPTGIVMFGDKHADMKPVLEKMDYAMSMETVILGEESGH 236

Query: 264 FAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKA- 322
           F YRSGDD RN+ G+     D VALVFA D DKP G GE QFH+A+S GV  +GP  KA 
Sbjct: 237 FMYRSGDDSRNISGSLKNSCDGVALVFARDNDKPQGVGESQFHVALSTGVVPVGPTLKAA 296

Query: 323 -VSVRANHAEGSTWLTAKREGHHVILDGEQILRHI-DQLENRFPQVELYVGVTKRRKCSI 380
            V V+ + +E STWLTA++EG    LDGE++L  I D++EN     +LY+GVTKRRKCSI
Sbjct: 297 SVKVKGDGSERSTWLTARKEGLKEALDGERLLHDIYDEMENENASHDLYIGVTKRRKCSI 356

Query: 381 GSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRN 440
           GSEK R +TTL FH + GGD+EYL+VDGVGIKTGD F+FY+ D + AL++CR+ SE  RN
Sbjct: 357 GSEKVRWVTTLEFHDVLGGDEEYLFVDGVGIKTGDPFRFYRSDSDTALSSCRHVSEEFRN 416

Query: 441 LKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPL 500
           LK   + K     R VA+  D+ EV GG IFSC GRG+SFFG  NVDS PF ENFP  PL
Sbjct: 417 LKQAWTHKNSYHFRGVADGGDKTEVCGGIIFSCYGRGDSFFGQANVDSSPFLENFPGFPL 476

Query: 501 AGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE 550
           AGI CGGEIGR  LS    +  +E  + R YLH YST YLVIS++ +  E
Sbjct: 477 AGIMCGGEIGRVHLSSADHQGGQEESSPRSYLHYYSTVYLVISHTPSSLE 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122060|ref|XP_002318743.1| predicted protein [Populus trichocarpa] gi|222859416|gb|EEE96963.1| predicted protein [Populus trichocarpa]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 301/572 (52%), Positives = 391/572 (68%), Gaps = 56/572 (9%)

Query: 10  KKKKKTIEISSLADC-EDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACS 68
           K K+  + ++S A   ED++ NI+ RLPA SFASAACV+KSWN +CN ILS+P+ ASA S
Sbjct: 4   KPKEPKMPMTSFASINEDLVQNIVKRLPASSFASAACVSKSWNQICNQILSKPKFASAFS 63

Query: 69  FKASAPIALQEVLDKVLLEPIRPHFAIANV-GRGFNMRRTLDFLVKHLGLRTPIILSVVH 127
              +  +AL+EV++KVL EPIRPHFAIANV G G ++R  LDFL   LG +TPII+S   
Sbjct: 64  LNPNEKVALEEVVNKVLSEPIRPHFAIANVIGSGVDLREKLDFLATKLGSQTPIIVSCAS 123

Query: 128 GVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKE 187
           G+MGRDA+T E REV  +++   G +    +C    GI+LTVG+LPGLKVD IPLL+ ++
Sbjct: 124 GIMGRDAVTGEHREVMLEEYWADGES---ISC---FGIILTVGFLPGLKVDVIPLLQPRK 177

Query: 188 V--PVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEK 245
           V  P               ++D FVM+I++Y  SVSG ASP GII+FG E  DQKP++EK
Sbjct: 178 VHRPA--------------LVDYFVMNIRDYAASVSGWASPAGIILFGDEGADQKPVMEK 223

Query: 246 LDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHG------ 299
           LD+AMS +TV VGDER++F YRSG + RN  G+  +   AVALVFA D+DKP G      
Sbjct: 224 LDHAMSRDTVIVGDERAQFLYRSGVESRNDYGSSEYFPAAVALVFARDRDKPCGIGLLIS 283

Query: 300 ---------------TGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEG--STWLTAKREG 342
                          TGEIQFH A+S GVSAIGPR+KAVSVR   +E   +T LTA+REG
Sbjct: 284 VFAISSFATKMDWQCTGEIQFHAALSSGVSAIGPRYKAVSVRKIGSETGCTTLLTARREG 343

Query: 343 HHVILDGEQILRHID-QLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQ 401
              I DG++IL  I+ +L N+  + +LY+GVT++RKC IGSEKSR++T L FHG+ GGDQ
Sbjct: 344 EQEIQDGQRILDDINNELVNQIGRPDLYIGVTEQRKCFIGSEKSRVMTFLVFHGVMGGDQ 403

Query: 402 EYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSID 461
           EYL+ DGVGI+TGDYFQFY  D   AL++C   S+N R LKL+ S +  L +  V++++ 
Sbjct: 404 EYLFADGVGIRTGDYFQFYHSDPTTALSSCNEVSKNFRKLKLDWSSRNCL-QAGVSDNVC 462

Query: 462 RKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQES 521
            KE++GGF+FSCCGRG SFF   NVDS PF +NFP  P+AG+FC GEIGRG   +     
Sbjct: 463 SKELVGGFVFSCCGRGESFFERCNVDSSPFLDNFPGVPMAGVFCRGEIGRGFSVLNA--- 519

Query: 522 QEESPAERRY---LHVYSTAYLVISYSAAPSE 550
            +E P ER     LHVYSTAYL++SY+ AP+E
Sbjct: 520 -DEGPEERTLHCCLHVYSTAYLLVSYTPAPAE 550

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540189|ref|XP_002511159.1| conserved hypothetical protein [Ricinus communis] gi|223550274|gb|EEF51761.1| conserved hypothetical protein [Ricinus communis]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 293/556 (52%), Positives = 374/556 (67%), Gaps = 44/556 (7%)

Query: 1   MDTEKPSSSKKKKKTIEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSR 60
           M+ E    +KK+       S +  ED++  IL +LPA S ASAACV KSW    N ILSR
Sbjct: 1   MEEETKRKAKKEDSRNGFDSFS--EDIVEKILRKLPALSLASAACVCKSWYHNSNRILSR 58

Query: 61  PRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTP 120
           P++ASA S   S  IALQEV+DKVL E IRPHFAIA+   GF  +  L+   +  G RTP
Sbjct: 59  PKLASAISLNPSLDIALQEVVDKVLSESIRPHFAIAS---GFGNKLGLE--KRKFGSRTP 113

Query: 121 IILSVVHGVMGRDALTDE-----FREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGL 175
           +I++  +G+MGRDA+T+E     +      D E + +N         SG +LTVG++PGL
Sbjct: 114 LIVTWANGIMGRDAVTNEDDSSNYDGDGDGDDEHMEIN---------SGFLLTVGFVPGL 164

Query: 176 KVDAIPLLRRKEVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKE 235
           KVD IP LR+                P+ MID FVMDI+NYTTS SGC SPVGIIMF  E
Sbjct: 165 KVDVIPYLRKIR------------PAPMEMIDIFVMDIRNYTTSASGCTSPVGIIMFASE 212

Query: 236 DMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKD 295
           D D KPI+EKLDYAMS  T+ VGDER++F YRS  D      NP   + A+ALVFA D++
Sbjct: 213 DFDLKPIMEKLDYAMSKETIIVGDERTKFLYRSRID----STNP--FAKAIALVFAKDRE 266

Query: 296 KPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRH 355
           KPHG GEIQFH A+S GVSAIGPR+K  S R    + +TWLTA++EG   ILDG++IL  
Sbjct: 267 KPHGLGEIQFHAALSNGVSAIGPRYKTASAREAFHDRNTWLTARQEGQPEILDGQRILND 326

Query: 356 I-DQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTG 414
           I D+LENR    +LY+GVT+ RK  I  EK RL+++L+F+G+ GGD+EYL+V G+GI+T 
Sbjct: 327 INDELENRIGDTDLYIGVTELRKRRIRKEKPRLMSSLSFYGVMGGDEEYLFVHGIGIRTA 386

Query: 415 DYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCC 474
           DYFQFY  D +AAL++CRN S N+RNL+L+ S K +L   D AN   +KE +GGFIFSCC
Sbjct: 387 DYFQFYHSDPSAALSSCRNVSANLRNLRLDWSCKKYLYPTDGANEF-KKECIGGFIFSCC 445

Query: 475 GRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRG-KLSMTGQESQEESPAERRYLH 533
           GRG +FFG  NVDS PF ENFP  PLAGIFCGGEIGR   +S T  + +E +P+  R LH
Sbjct: 446 GRGEAFFGSPNVDSSPFLENFPGVPLAGIFCGGEIGRSFSISNTLDDREESTPS--RCLH 503

Query: 534 VYSTAYLVISYSAAPS 549
           V+S+ YLV+SY+ +P+
Sbjct: 504 VFSSVYLVLSYTPSPA 519

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488987|gb|ABK96301.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 287/553 (51%), Positives = 367/553 (66%), Gaps = 33/553 (5%)

Query: 4   EKPSSSKKKKKTIEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRI 63
           EKP    K+ KT      +  ED+  NIL R+PA SFASAACV+KSWN  CN IL +P++
Sbjct: 7   EKP----KEAKTPMTGFASINEDLFQNILKRIPALSFASAACVSKSWNRNCNQILYKPKL 62

Query: 64  ASACSFKASAPIALQEVLDKVLLEPIRPHFAIANV-GRGFNMRRTLDFLVKHLGLRTPII 122
           AS+ S      +AL+EV++KVL EPIRP FAIANV G G ++   LDFL   LG +TPII
Sbjct: 63  ASSFSLNPVQKVALEEVVNKVLSEPIRPQFAIANVIGSGVHLSGMLDFLAAKLGSKTPII 122

Query: 123 LSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPL 182
           +S   G+MGRDA+TDE++EV  +D    G +          GI+L+VG+LPGLKVDAIPL
Sbjct: 123 VSCAGGIMGRDAVTDEYKEVMIEDFWVDGASN------SSFGIMLSVGFLPGLKVDAIPL 176

Query: 183 LRRKEVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPI 242
           LR ++            A  V M+D+FVMDI+NY   VS   SP  IIMFG E  DQKP+
Sbjct: 177 LRPRK------------ARGVAMVDKFVMDIRNYAALVSDSTSPSLIIMFGSEKTDQKPV 224

Query: 243 IEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPA--FISDAVALVFASDKDKPHGT 300
           +EKLD+AMS  T+ VGDER++F YRSG + RNV       + SDAVALVFA D+++P GT
Sbjct: 225 MEKLDHAMSRETIVVGDERAQFLYRSGIESRNVYYGSVDHYFSDAVALVFARDQNRPSGT 284

Query: 301 GEIQFHLAMSEGVSAIGPRHKAVSVRANHAEG--STWLTAKREGHHVILDGEQILRHIDQ 358
           GEI FH A+S GVSAIGPR KAVS     +E   STWLT +RE    IL G++I   ID 
Sbjct: 285 GEIHFHSALSSGVSAIGPRFKAVSANEIESETGLSTWLTVRREAEQEILGGQRI---IDD 341

Query: 359 LENRF-PQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYF 417
           + N    Q +L++GV+++RKC +G EK R + +LAFH + GGD+E+L+VDGVGIKTGDYF
Sbjct: 342 INNELGNQTKLFIGVSEQRKCFVGPEKPRQMRSLAFHEVMGGDEEHLFVDGVGIKTGDYF 401

Query: 418 QFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRG 477
             Y PD +AAL++C N S+N RNLKL+ S +    +   A  +  KEV+GGF+F+C GRG
Sbjct: 402 HLYHPDPSAALSSCSNISKNFRNLKLDWSFRS--CQLHAARGVGEKEVIGGFVFACWGRG 459

Query: 478 NSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYST 537
            SFFG  NVDS PF +NFP   +AGIF  GEIGRG   +   ES +E       +HVYST
Sbjct: 460 ESFFGHNNVDSSPFLDNFPGVLMAGIFTYGEIGRGFSILNTDESGQEVKTLCFCVHVYST 519

Query: 538 AYLVISYSAAPSE 550
            YL++SY+ AP E
Sbjct: 520 VYLLVSYTPAPIE 532

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118086|ref|XP_002331554.1| predicted protein [Populus trichocarpa] gi|222873778|gb|EEF10909.1| predicted protein [Populus trichocarpa]

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 289/554 (52%), Positives = 368/554 (66%), Gaps = 34/554 (6%)

Query: 4   EKPSSSKKKKKTIEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRI 63
           EKP    K+ KT      +  ED+  NIL R+PA SFASAACV+KSW+  CN IL +P++
Sbjct: 3   EKP----KEAKTPMTGFASINEDLFQNILKRIPALSFASAACVSKSWSRNCNQILYKPKL 58

Query: 64  ASACSFKASAPIALQEVLDKVLLEPIRPHFAIANV-GRGFNMRRTLDFLVKHLGLRTPII 122
           ASA S      +AL+EV++KVL EPIRP FAIANV G G ++   LDFL   LG +TPII
Sbjct: 59  ASAFSLNPVQKVALEEVVNKVLSEPIRPQFAIANVIGSGVDLSGILDFLAAKLGSKTPII 118

Query: 123 LSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPL 182
           +S   G+MGRDA+TDE++EV  +D    G +          GI+L VG+LPGLKVDAIPL
Sbjct: 119 VSCAGGIMGRDAVTDEYKEVMIEDFWVDGASN------SSFGIMLAVGFLPGLKVDAIPL 172

Query: 183 LRRKEVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPI 242
           LR ++            A  V M+D+FVMDI+NY   VS   SP  IIMFG E  DQKP+
Sbjct: 173 LRPRK------------AQGVAMVDKFVMDIRNYAALVSDSTSPSLIIMFGSEKTDQKPV 220

Query: 243 IEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPA--FISDAVALVFASDKDKPHGT 300
           +EKLD+AMS  T+ VGDER++F YRSG + RNV       + SDAVALVFA D+++P GT
Sbjct: 221 MEKLDHAMSRETIVVGDERAQFLYRSGIESRNVYYGSVDQYFSDAVALVFARDQNRPSGT 280

Query: 301 GEIQFHLAMSEGVSAIGPRHKAVSVRANHAEG--STWLTAKREGHHVILDGEQILRHIDQ 358
           GEI FH A+S GVSAIGPR KAVS     +E   STWL+ +REG   IL G++I   ID 
Sbjct: 281 GEIHFHSALSSGVSAIGPRFKAVSANEIESETGLSTWLSVRREGGQEILGGQRI---IDD 337

Query: 359 LENRF-PQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYF 417
           + N    Q +L++GV+++RKC +G EK R + +LAFH + GGD E+L+VDGVGIKTGDYF
Sbjct: 338 INNELGNQTKLFIGVSEQRKCFVGPEKPRQMRSLAFHEVMGGDVEHLFVDGVGIKTGDYF 397

Query: 418 QFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRG 477
             Y PD +AAL++C N S+N RNLKL+ S +    +   A  +  KEV+GGF+F+C GRG
Sbjct: 398 HLYHPDPSAALSSCSNISKNFRNLKLDWSFRSC--QLHAARGVGEKEVIGGFVFACWGRG 455

Query: 478 NSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRG-KLSMTGQESQEESPAERRYLHVYS 536
            SFFG  NVDS PF +NFP  P+AGIF  GEIGRG  +  T  ES +E       +HVYS
Sbjct: 456 ESFFGHSNVDSSPFLDNFPGVPMAGIFTYGEIGRGFSILNTDFESGQEDKTLCFCVHVYS 515

Query: 537 TAYLVISYSAAPSE 550
           T YL++SY+ AP E
Sbjct: 516 TVYLLVSYTPAPIE 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115878|ref|XP_002317147.1| predicted protein [Populus trichocarpa] gi|222860212|gb|EEE97759.1| predicted protein [Populus trichocarpa]

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/547 (50%), Positives = 362/547 (66%), Gaps = 37/547 (6%)

Query: 12  KKKTIEISSLADC-EDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFK 70
           KK+  +++  A   ED++ NIL R PA SFASAACV KSWN  CN ILS+P++ASA S  
Sbjct: 36  KKQERQLAGFASINEDLVQNILKRTPASSFASAACVCKSWNQTCNQILSKPKLASAFSLN 95

Query: 71  ASAPIALQEVLDKVLLEPIRPHFAIANV-GRGFNMRRTLDFLVKHLGLRTPIILSVVHGV 129
               +A QEV++KVL EPIRP FAIANV G G ++  TL+FL   LG +TPII+S  +G+
Sbjct: 96  PDQKVASQEVVNKVLSEPIRPQFAIANVIGSGVDLSETLNFLAAKLGSKTPIIVSCANGI 155

Query: 130 MGRDALTDEFREVKFQDH--EDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKE 187
           +GRDA+TDE +EV  +D   +    N G        G++LTVG+LPGL+V+AIPLLR ++
Sbjct: 156 IGRDAVTDEHQEVMLEDFWADAASKNSGF-------GVLLTVGFLPGLQVEAIPLLRPRK 208

Query: 188 VPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLD 247
                       A  + ++D+FVMDI+NY  +VSG  SP  +IMFG E  +QKP++EKLD
Sbjct: 209 A-----------ASRMALVDKFVMDIRNYAANVSGSTSPALVIMFGGEKAEQKPVMEKLD 257

Query: 248 YAMSMNTVFVGDERSRFAYRSGDDLRNVCGN-PAFISDAVALVFASDKDKPHGTGEIQFH 306
           +AMS  T   GDER++F Y+SG + RNV G+   +ISDAV LVFA D+ +    GEIQFH
Sbjct: 258 HAMSRETFIAGDERAQFLYKSGIESRNVHGSGNEYISDAVVLVFARDRHRASDVGEIQFH 317

Query: 307 LAMSEGVSAIGPRHKAVSVRANHAEG--STWLTAKREGHHVILDGEQILRHIDQLENRF- 363
            A+S GVS IGPR+K VSV+    E   +T L A+REG   IL G++I   ID + N   
Sbjct: 318 SALSSGVSTIGPRYKVVSVKEIQPETDLTTCLKARREGEQEILGGQRI---IDDINNELV 374

Query: 364 PQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPD 423
            + EL++GV+K+R+C IGSE  +L+ +LAFH ++GGD E+L+V G GI +GDYF FY  D
Sbjct: 375 NKTELFIGVSKQRQCVIGSENPKLLRSLAFHEVKGGDGEHLFVSGDGIGSGDYFHFYHSD 434

Query: 424 HNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGG 483
             AAL+A  N S+N RNLKL+ S          A  +  KEV+GG +FSC GRG SFFG 
Sbjct: 435 SKAALSATSNVSKNFRNLKLDWSSSQLH-----AGGVGSKEVVGGLVFSCWGRGESFFGH 489

Query: 484 LNVDSFPFFENFPSAPLAGIFCGGEIGRG--KLSMTGQESQEESPAERRYLHVYSTAYLV 541
            NVDS PF +NFP  P+AGIFC GE+GRG   L+    E QEE  +    LHVYST Y++
Sbjct: 490 SNVDSSPFLDNFPGIPMAGIFCYGEVGRGFTMLNADDHEDQEEKTS-CCCLHVYSTIYVL 548

Query: 542 ISYSAAP 548
           +SY+ AP
Sbjct: 549 VSYTPAP 555

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516535|ref|XP_003526949.1| PREDICTED: F-box/LRR-repeat protein At5g63520-like [Glycine max]

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 269/533 (50%), Positives = 350/533 (65%), Gaps = 34/533 (6%)

Query: 25  EDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKV 84
           ED+L NIL+RLP+  FASAACV+KSWN +C+ ILSRP+++SA S   S P A+ EV+ KV
Sbjct: 34  EDLLQNILARLPSLHFASAACVSKSWNSLCSRILSRPKLSSAISLNPSLPDAVNEVVHKV 93

Query: 85  LLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVK- 143
           L EPIRPHFAIAN+G GFN  +TL  + K LG   P+I++V +G+MGRDA+TDEF+EVK 
Sbjct: 94  LSEPIRPHFAIANIGTGFNTAKTLCLIRKSLGFNIPVIVTVANGIMGRDAVTDEFKEVKW 153

Query: 144 ---FQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEVPVDDTYVDVYLA 200
              F    +    R I       G+VLTVGYLPGLKV+A+P LRR       T+V     
Sbjct: 154 GALFSGFGEESYTRFI-----NEGLVLTVGYLPGLKVEALP-LRRPTKTSQATWV----- 202

Query: 201 PPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDE 260
                 D F+ DI+ Y+ SVS    PVGII+FG+   D K ++EKLD+AM M+ V VGDE
Sbjct: 203 ------DNFIKDIKEYSASVSSSPFPVGIILFGEASSDMKLVLEKLDHAMPMDMVIVGDE 256

Query: 261 RSR--FAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGP 318
           R    F ++SG+D R +C     I +AVALVFA D+D+  GT  I+FH+A+S GVS +GP
Sbjct: 257 RGSFDFVHKSGNDSRIICSKKGNI-EAVALVFAQDRDRSLGT--IRFHVALSNGVSTVGP 313

Query: 319 RHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQ-LENRFPQVELYVGVTKRRK 377
           R+KA SV++N+A+ STWLTA+REG    LDG+ IL  I+  L+N     +LY+GV K RK
Sbjct: 314 RYKAASVKSNNADCSTWLTARREGQQENLDGQSILLDINNLLDNHIESPDLYIGVIKHRK 373

Query: 378 CSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASEN 437
            S G+EK    T +A+HG+ GGD+EYLYVDG+GIKTGD FQFY  D N ALA+     + 
Sbjct: 374 LSTGAEKPMPRTCIAYHGVVGGDEEYLYVDGIGIKTGDIFQFYYSDPNTALASLTKVHDA 433

Query: 438 IRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPS 497
           ++++ L  + K   G  D A +     V GG +F+C GRG SFFG  NVDS PF ENFP 
Sbjct: 434 LKSIHLEKNSKSSKGDGDNATN-----VFGGIVFACYGRGESFFGRHNVDSSPFLENFPG 488

Query: 498 APLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE 550
            P++GIFCGGE+ R   ++ GQ  +  SP     LHVYST YL +SY+    E
Sbjct: 489 VPVSGIFCGGEMVRPCTTVIGQ-CEGASPIS-CCLHVYSTVYLAMSYTPPSVE 539

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115874|ref|XP_002317146.1| predicted protein [Populus trichocarpa] gi|222860211|gb|EEE97758.1| predicted protein [Populus trichocarpa]

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 260/495 (52%), Positives = 335/495 (67%), Gaps = 33/495 (6%)

Query: 25  EDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKV 84
           ED++ NIL R PA SFASAACV+KSWN  CN ILS+P++ASA S      +ALQEV+ KV
Sbjct: 20  EDLVQNILKRTPATSFASAACVSKSWNHNCNQILSKPKLASAFSLNPDPKVALQEVVSKV 79

Query: 85  LLEPIRPHFAIANV---GRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFRE 141
           L EPIRP FAIANV   G  + +  TL  L   LG +TPII+S  +G++GRDA+T E +E
Sbjct: 80  LSEPIRPQFAIANVIESGVEY-LSETLYLLAAKLGSKTPIIVSCTNGIIGRDAVTSEHKE 138

Query: 142 VKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEVPVDDTYVDVYLAP 201
           V     ED  V+      G   G++LTVGYLPGLKV+A+PLLR ++            A 
Sbjct: 139 VML---EDFWVDAASKNSG--FGMLLTVGYLPGLKVEALPLLRPRK------------AG 181

Query: 202 PVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDER 261
           PV MID FVMDI+NY+ SVSG  SP  IIMFG E+ D KP++EKLD+AMS  T+  G  R
Sbjct: 182 PVAMIDNFVMDIKNYSASVSGSTSPALIIMFGGEEADLKPVMEKLDHAMSRETIIAGGMR 241

Query: 262 SRFAYRSGDDLRNVCGNPA-FISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRH 320
           S+F YR G + RN+ G+   + +DAVALVFA D+DKP G G+IQFH A+S GVSAIGPR+
Sbjct: 242 SQFLYRRGIESRNIYGSSTKYFTDAVALVFARDEDKPSGEGKIQFHSAISSGVSAIGPRY 301

Query: 321 KAVSVRANHAEG--STWLTAKREGHHVILDGEQILRHID-QLENRFPQVELYVGVTKRRK 377
           KAVSV+   +E   +TWLT++REG   IL G+ I+  I+ +L N+    EL++GV+K+R+
Sbjct: 302 KAVSVKETQSETGLTTWLTSRREGEQEILGGQMIIDSIESELVNK---TELFIGVSKQRQ 358

Query: 378 CSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASEN 437
             IGSE  +L+ +LA H ++GGD E+L+V G GI +GDYF FY  D  AAL+A  N S+ 
Sbjct: 359 SVIGSENPKLLRSLALHQVKGGDGEHLFVSGDGIGSGDYFHFYHSDPKAALSATSNVSKY 418

Query: 438 IRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPS 497
            RNLKL+     +   +  A  +  KEV+GG +FSC GRG SFFG  NVDS PF +NFP 
Sbjct: 419 FRNLKLD-----WRSCQLHAGDVGSKEVVGGLVFSCWGRGASFFGHSNVDSSPFLDNFPG 473

Query: 498 APLAGIFCGGEIGRG 512
            P+AGIF  GE+GRG
Sbjct: 474 IPMAGIFGCGEVGRG 488

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	550
UNIPROTKB|H3BTR7	78	FBXO22 "F-box only protein 22"	0.090	0.641	0.442	8.2e-05
UNIPROTKB|Q8NEZ5	403	FBXO22 "F-box only protein 22"	0.090	0.124	0.442	0.00014
UNIPROTKB|A5PJX0	404	FBXO22 "Uncharacterized protei	0.114	0.155	0.388	0.00026
UNIPROTKB|E2RAB7	401	FBXO22 "Uncharacterized protei	0.158	0.216	0.333	0.0004

UNIPROTKB|H3BTR7 FBXO22 "F-box only protein 22" [Homo sapiens (taxid:9606)]

 Score = 104 (41.7 bits), Expect = 8.2e-05, P = 8.2e-05
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query:   468 GFIFSCCGRGNSFFGGL-NVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTG 518
             GF+F+C GRG  ++    NV++  F + FPS PL G F  GEIG  ++ +TG
Sbjct:    18 GFMFACVGRGFQYYRAKGNVEADAFRKFFPSVPLFGFFGNGEIGCDRI-VTG 68

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

GO:0010830 "regulation of myotube differentiation" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q8NEZ5 FBXO22 "F-box only protein 22" [Homo sapiens (taxid:9606)]

 Score = 104 (41.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query:   468 GFIFSCCGRGNSFFGGL-NVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTG 518
             GF+F+C GRG  ++    NV++  F + FPS PL G F  GEIG  ++ +TG
Sbjct:   321 GFMFACVGRGFQYYRAKGNVEADAFRKFFPSVPLFGFFGNGEIGCDRI-VTG 371

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

GO:0010830 "regulation of myotube differentiation" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

UNIPROTKB|A5PJX0 FBXO22 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 109 (43.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
 Identities = 26/67 (38%), Positives = 40/67 (59%)

Query:   453 RRDVANSIDRKEVLGGFIFSCCGRGNSFFGGL-NVDSFPFFENFPSAPLAGIFCGGEIGR 511
             R   AN  ++  +  GF+F+C GRG+ ++    NV++  F + FPS PL G F  GEIG 
Sbjct:   309 RLKAANIPEQNTI--GFMFACVGRGSQYYRAKKNVEADAFRKFFPSVPLFGFFGNGEIGC 366

Query:   512 GKLSMTG 518
              ++ +TG
Sbjct:   367 DRI-VTG 372

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0010830 "regulation of myotube differentiation" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

UNIPROTKB|E2RAB7 FBXO22 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 110 (43.8 bits), Expect = 0.00040, Sum P(2) = 0.00040
 Identities = 31/93 (33%), Positives = 49/93 (52%)

Query:   453 RRDVANSIDRKEVLGGFIFSCCGRGNSFFGGL-NVDSFPFFENFPSAPLAGIFCGGEIGR 511
             R   AN  +R  +  GF+F+C GRG  ++    NV++  F + FPS PL G F  GEIG 
Sbjct:   306 RLKAANIPERNTI--GFMFACVGRGFQYYRAKGNVEADAFRKFFPSVPLFGFFGNGEIGC 363

Query:   512 GKLSMTGQESQEE--SPAERRYLHVYSTAYLVI 542
              ++ +TG    ++     +    H Y+T  ++I
Sbjct:   364 DRI-VTGNFVLKKCNEVKDDDLFHSYTTIMVLI 395

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0010830 "regulation of myotube differentiation" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FMV0	FBL91_ARATH	No assigned EC number	0.4382	0.92	0.9565	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017954001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (526 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	550
pfam10442	137	pfam10442, FIST_C, FIST C domain	4e-11
COG4398	389	COG4398, COG4398, Uncharacterized protein conserve	8e-08
pfam00646	48	pfam00646, F-box, F-box domain	2e-05
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	3e-05
pfam12937	47	pfam12937, F-box-like, F-box-like	6e-05

>gnl|CDD|220757 pfam10442, FIST_C, FIST C domain

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 26/102 (25%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 411 IKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFI 470
           +  G+  Q    D    +   R A E  R                       +   G  +
Sbjct: 56  VPEGEELQLMLRDAEDLIEDLRRALEAARE--------------------GGRPPAGALL 95

Query: 471 FSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRG 512
           FSC GRG   FG  + +     E    AP+ G F  GEIG G
Sbjct: 96  FSCIGRGLLLFGEPDEELEAVREVLGDAPVIGFFTYGEIGPG 137

The FIST C domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids. Length = 137

>gnl|CDD|226833 COG4398, COG4398, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 54.4 bits (131), Expect = 8e-08
 Identities = 19/45 (42%), Positives = 24/45 (53%)

Query: 466 LGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIG 510
           +G  +F+C GRG   FG  + D+    E     PLAG F  GEIG
Sbjct: 323 VGALLFTCNGRGRRMFGVPDHDASTIEELLGGIPLAGFFAAGEIG 367

Length = 389

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 18 ISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56
          +  L   +D+L  ILSRL  K     + V+K W  + +S
Sbjct: 3  LLDL--PDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDS 39

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56
           +++L  ILS+L  K       V++ W  + +S
Sbjct: 2  PDEILEEILSKLDPKDLLRLRKVSRKWRSLIDS 34

Length = 41

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 40.2 bits (95), Expect = 6e-05
 Identities = 7/32 (21%), Positives = 14/32 (43%)

Query: 25 EDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56
          +++L  I S L  +     A V + W  + + 
Sbjct: 6  DEILLQIFSYLDPRDLLRLALVCRRWRELASD 37

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	550
COG4398	389	Uncharacterized protein conserved in bacteria [Fun	100.0
COG3287	379	Uncharacterized conserved protein [Function unknow	99.95
PF08495	198	FIST: FIST N domain; InterPro: IPR013702 The FIST	99.82
PF10442	136	FIST_C: FIST C domain; InterPro: IPR019494 This en	99.72
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	96.84
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	96.66
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	96.08
PF10442	136	FIST_C: FIST C domain; InterPro: IPR019494 This en	83.47

>COG4398 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=7.9e-57  Score=448.27  Aligned_cols=370  Identities=21%  Similarity=0.278  Sum_probs=303.2

Q ss_pred             ceeeeecCCCChHHHHHHHHHHHhcCC-CCCCeEEeeccc-Ccc--hHHHHHHHHHhcCCCCceEEeeeccccccchhhh
Q 008869           62 RIASACSFKASAPIALQEVLDKVLLEP-IRPHFAIANVGR-GFN--MRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTD  137 (550)
Q Consensus        62 k~~~a~S~~p~~~~A~~ev~~q~l~~~-~~P~~aia~~~~-gfd--~~~~l~~i~~~~~~~~p~I~~~~~Giig~~~~~~  137 (550)
                      ..+-|.|+.|+.+.|+.|++.|+.++. ...+.+++|+++ .|-  -..+|-.+.+++. -.-+|+|.+.|||+.   ..
T Consensus         6 ~w~nAlstRpsle~A~~ea~~~a~~~l~g~~~l~~v~l~Sra~~~~aa~vlp~v~e~ls-~p~lIGC~~~giia~---~~   81 (389)
T COG4398           6 GWSNALSTRPSLERAAVEAAAQARDELAGEAPLLAVLLGSRAHTDRAADVLPAVQEMLS-PPALIGCIAQGIVAG---RH   81 (389)
T ss_pred             eeecccccchhHHHHHHHHHHHhhhcccCCCCEEEEEecccchhhhHHHHHHHHHHhcC-ccceeeecccceeee---ee
Confidence            345688999999999999999999975 445667778887 443  5566777777665 566788888888831   11


Q ss_pred             HHHhhhccccccccccccccccCceEEEEEeeecCCCCeeeeeeccccCCCCCCCccccccCCCCCccccchhhcccccc
Q 008869          138 EFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEVPVDDTYVDVYLAPPVPMIDQFVMDIQNYT  217 (550)
Q Consensus       138 e~~e~~~~~~~~g~~~~g~~~~g~e~~l~l~vg~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~di~~~~  217 (550)
                      |+                    ..|.++++|+++  |...++|-+     +.+        -.++-+||+-.-     +.
T Consensus        82 El--------------------E~E~A~s~~lA~--Gv~~~~F~l-----~~~--------~t~~~a~i~~~~-----~d  121 (389)
T COG4398          82 EL--------------------EDEPAVSVWLAS--GVAAETFHL-----DFV--------RTGSGALITGYR-----FD  121 (389)
T ss_pred             ee--------------------cCCceEEEEecc--Ccccceeec-----ccc--------cCCCcceEEeee-----cC
Confidence            21                    123599999999  655566641     111        123335554210     00


Q ss_pred             cccCCCCCCeEEEEecC-CCCChhHHHHHHHhhcCCCceEEccccccccccCCCccccccCCCccccCeEEEEEecCCCC
Q 008869          218 TSVSGCASPVGIIMFGK-EDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDK  296 (550)
Q Consensus       218 ~~~s~~~~p~~~lv~~D-~~~d~~~ll~~L~~al~~~~~I~GGla~~~~~~~gd~sr~~~~~~v~~~g~vgv~fa~d~~~  296 (550)
                      .     ++--.-|+++| .++..+.|+++|+.++|. ..++||+++.  .+.+.+.+-|++.+++.+|.|||.+      
T Consensus       122 ~-----t~~~~~ilL~dp~t~~~n~li~~l~~~~Pg-ttvvGG~~Sg--g~~~G~~~Lf~~~~~~~~G~vGv~L------  187 (389)
T COG4398         122 R-----TARDLHLLLPDPYTFPSNLLIEHLNTDLPG-TTVVGGVVSG--GRRRGDTRLFRDHDVLTSGVVGVRL------  187 (389)
T ss_pred             C-----CCCCceEEccCCcccchHHHhhccCcCCCC-ceEEccEeec--CccCCceEEeecCCcccCceeEEee------
Confidence            0     11134488899 999999999999999976 8999999983  3555567778888889999999999      


Q ss_pred             CCCCCCEEEEEEeccCCeecCCCeEEEeeccccccCcceeccccccccccccCchHhHHhhHH-------hccCCCcceE
Q 008869          297 PHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQL-------ENRFPQVELY  369 (550)
Q Consensus       297 ~~~~g~i~~~~~vsqGc~PiGp~~~VT~v~~~~se~Nv~l~~~~~g~l~eLDG~pALd~L~e~-------~~~l~~~~l~  369 (550)
                         .| +++.+.|+|||||||.++.||     ++++|+         +.||+|+|-|..|+++       +++|.+++|+
T Consensus       188 ---~G-i~l~~vVsQGCRPIGeP~iVt-----~a~~ni---------ItEl~gr~PL~~Lr~ii~~lsp~er~L~~~~L~  249 (389)
T COG4398         188 ---PG-IRLVPVVSQGCRPIGEPYIVT-----GADGNI---------ITELGGRPPLQRLREIVEGLSPDERALVSHGLQ  249 (389)
T ss_pred             ---cc-ceecchhccCcccCCCceEee-----ccCcee---------EeecCCCChHHHHHHHhhccChhhHHHHhcCce
Confidence               77 999999999999999999999     999999         9999999999977754       6889999999


Q ss_pred             EEEeeccccccCCCCCceeeeeeeccccccCccc-ceeeccCCCCCCEEEEEccCHHHHHHHHHHHHHHHHHhhhccCCC
Q 008869          370 VGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEY-LYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGK  448 (550)
Q Consensus       370 iGl~~~~~~~~~~~~~~lvR~l~v~~ilG~D~~~-~i~~~~~I~~G~~vqf~~RD~~aA~~dl~~~~~~lr~l~~~~~~~  448 (550)
                      ||+++++......+++|++|.+     +|+||.. .|++++-|++|+++||+.||++++.+||+-..+..   .+++   
T Consensus       250 iGi~~DE~~~~~~qGDFlIR~l-----LG~DPs~GaIaIgd~Vr~G~~lQF~~RD~~as~~dL~~l~er~---~~e~---  318 (389)
T COG4398         250 IGIVVDEHLAAPGQGDFLIRGL-----LGADPSTGAIAIGEVVRVGATLQFQVRDAAAADKDLRLLVERA---AAEL---  318 (389)
T ss_pred             EEEEehhhhcCCCCCceEeeec-----cccCCCCCceeecceeccCcEEEEEEcccccchhHHHHHHHHH---HhhC---
Confidence            9999999988788999999999     9999999 79999999999999999999999999998766544   3333   


Q ss_pred             CcccccccccccCCCceeEEEEEeeCCCCcCCCCCCccchHhHHhhCCCCceeeeccccccCCCCCccCCCCCCCCCCcc
Q 008869          449 GFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAE  528 (550)
Q Consensus       449 ~~~~~~~~~~~~~~~~p~gaL~fSC~GRG~~lfg~~~~E~~~vre~Lg~vPLaGFfa~GEIgp~~~~~~~g~~~~~~~~~  528 (550)
                                   ..++.|||||||+|||..|||.+|+|+++|.+.||++|++||||+|||+|     +++         
T Consensus       319 -------------~~~avGaLmFsC~GRG~~m~G~p~~Ds~~~~~~~~gipl~GFF~~GEIGp-----V~g---------  371 (389)
T COG4398         319 -------------PGRAVGALLFTCNGRGRRMFGVPDHDASTIEELLGGIPLAGFFAAGEIGP-----VAG---------  371 (389)
T ss_pred             -------------CCccceeEEEEecCccccccCCCCccHHHHHHHhCCCcccceeecCcccc-----ccc---------
Confidence                         35689999999999999999999999999999999999999999999999     999         


Q ss_pred             cccccccceeeeeeccC
Q 008869          529 RRYLHVYSTAYLVISYS  545 (550)
Q Consensus       529 ~~~LH~yT~vl~lfse~  545 (550)
                      +|+|||||.++++|.+.
T Consensus       372 r~~LHG~Ts~~ai~~~~  388 (389)
T COG4398         372 RNALHGFTASMALFVDD  388 (389)
T ss_pred             hhhhhccceeeEEEeec
Confidence            89999999999999765

>COG3287 Uncharacterized conserved protein [Function unknown]

Probab=99.95  E-value=3.8e-27  Score=246.66  Aligned_cols=357  Identities=15%  Similarity=0.103  Sum_probs=233.9

Q ss_pred             ecCCCChHHHHHHHHHHHhcCC-CCCCeEEe-ecccCcchHHHHHHHHHhcCCCCceEEeeeccccccchhhhHHHhhhc
Q 008869           67 CSFKASAPIALQEVLDKVLLEP-IRPHFAIA-NVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKF  144 (550)
Q Consensus        67 ~S~~p~~~~A~~ev~~q~l~~~-~~P~~aia-~~~~gfd~~~~l~~i~~~~~~~~p~I~~~~~Giig~~~~~~e~~e~~~  144 (550)
                      +..-++..+|-+++.+..+.-. .++.|++. |.-..++|.++...|+.+++ ++++|||++.|.|..++..+       
T Consensus         6 ~~~v~~~~d~~~v~~e~~~~~~~~~~~~~~ifF~~~~~~~~~l~~~l~~~~p-g~~liGCSTaGeitp~g~~~-------   77 (379)
T COG3287           6 KRGVSDGKDAESVIEEMARQLGSDRSDFVLIFFSPERDEHVQLASALKQAFP-GICLIGCSTAGEITPDGFKN-------   77 (379)
T ss_pred             eccCcCcCCHHHHHHHHHHhhCcCCCCeEEEEeccccccHHHHHHHHHhhCC-CCeEeccccCceEccccccC-------
Confidence            3344444444444443333322 68899986 66666778899999999888 89999999999998443222       


Q ss_pred             cccccccccccccccCceEEEEEeeecCCCC---eeeeeeccccCCCCCCCccccccCCCCCccccchhhcccccccccC
Q 008869          145 QDHEDIGVNRGICTCGQQSGIVLTVGYLPGL---KVDAIPLLRRKEVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVS  221 (550)
Q Consensus       145 ~~~~~g~~~~g~~~~g~e~~l~l~vg~lP~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~di~~~~~~~s  221 (550)
                           |+|.             +|+-..+..   +...+....|..       .|    +-.+++++...|-..   ..+
T Consensus        78 -----~~V~-------------il~~~~~~~a~~s~~~~~~~s~~~-------~~----~i~~~~E~l~~~~~~---~~~  125 (379)
T COG3287          78 -----GSVL-------------LLAFDSSEFAALSTALVDRESPVS-------RD----PIAEAIERLIRDKRD---RLS  125 (379)
T ss_pred             -----CeEE-------------EEEechHHHHHhhhhhccccCccc-------ch----hHHHHHHHHHhcccc---ccc
Confidence                 2222             222221111   101111111100       00    111223332222211   011


Q ss_pred             CCCCCeEEEEecC-CCCChhHHHHHHHhhcCCCceEEccccccccccCCCcccc-----ccCCCccccC-eEEEEEecCC
Q 008869          222 GCASPVGIIMFGK-EDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRN-----VCGNPAFISD-AVALVFASDK  294 (550)
Q Consensus       222 ~~~~p~~~lv~~D-~~~d~~~ll~~L~~al~~~~~I~GGla~~~~~~~gd~sr~-----~~~~~v~~~g-~vgv~fa~d~  294 (550)
                       -..+..+|+|.| ++.-...+++++.......+||+||.|+|       +.+.     ++..+ +.++ ++-++|    
T Consensus       126 -~~r~~~~l~f~dgl~~~ee~l~~~~~~~~~~~iPi~GGsAaD-------~~~~e~t~v~~~g~-v~~~aavi~l~----  192 (379)
T COG3287         126 -PTRPVLALTFIDGLSTSEEVLLDGAVLAALETIPIFGGSAAD-------DLEFERTYVFDEGE-VHEDAAVILLF----  192 (379)
T ss_pred             -ccCceEEEEEeccCCcchhhhhhhhhcccccceeeeccccCC-------CCccceEEEEEccc-cccCceEEEEe----
Confidence             133589999999 77777777774444444679999999994       3322     22556 6666 776777    


Q ss_pred             CCCCCCCCEEEEEEeccCCeecCCCeEEEeeccccccCcceeccccccccccccCchHhHHhhHHh---ccCCCcceE-E
Q 008869          295 DKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLE---NRFPQVELY-V  370 (550)
Q Consensus       295 ~~~~~~g~i~~~~~vsqGc~PiGp~~~VT~v~~~~se~Nv~l~~~~~g~l~eLDG~pALd~L~e~~---~~l~~~~l~-i  370 (550)
                           ++.+.|+++.++||.|++.+++||     ++++|+         ++||||+||.+.+.++-   ++++....+ .
T Consensus       193 -----~t~l~f~~~~~~g~~Pt~~~~~VT-----ka~~~v---------V~EiDgePA~e~Y~e~vg~~e~l~~~~~~~~  253 (379)
T COG3287         193 -----GTQLKFGHGFAHGFVPTDKTGVVT-----KADGDV---------VYEIDGEPAAEEYAEVVGAVEELDPEMFIPN  253 (379)
T ss_pred             -----cceEEeecccccceEEccceEEEE-----eecCcE---------EEEeCCCcHHHHHHHHhCchhhcChhHhccc
Confidence                 899999999999999999999999     888999         99999999999666542   233221111 2


Q ss_pred             EEeeccccccCCCCCceeeeeeeccccccCcccceeecc-CCCCCCEEEEEccCHHHHHHHHHHHHHHHHHhhhccCCCC
Q 008869          371 GVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGV-GIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKG  449 (550)
Q Consensus       371 Gl~~~~~~~~~~~~~~lvR~l~v~~ilG~D~~~~i~~~~-~I~~G~~vqf~~RD~~aA~~dl~~~~~~lr~l~~~~~~~~  449 (550)
                      +|...+.     ...+++|.+     ...|++.++.+.- .|+.|..++++.-..  ....++++..   ...+++    
T Consensus       254 pl~~~~~-----~~~y~vr~p-----~~~~e~~~~~f~~~~i~~~v~lr~~~~~~--~~~~~e~~~~---~a~~~~----  314 (379)
T COG3287         254 PLGVRDL-----GPLYYVRAP-----QFVDEEGGLIFLSAAIPLGVVLRLGETGG--IERVTERALR---RAFEDL----  314 (379)
T ss_pred             ceEEEeC-----CCcEEEeCc-----ceeccccceEEeeccCCCccEEEeecCCc--ccHHHHHHHH---HHHhhc----
Confidence            3322221     344666665     9999998766665 999999999997655  3444444332   223333    


Q ss_pred             cccccccccccCCCceeEEEEEeeCCCCcCCCCCCccchHhHHhhCCCCceeeeccccccCCCCCccCCCCCCCCCCccc
Q 008869          450 FLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAER  529 (550)
Q Consensus       450 ~~~~~~~~~~~~~~~p~gaL~fSC~GRG~~lfg~~~~E~~~vre~Lg~vPLaGFfa~GEIgp~~~~~~~g~~~~~~~~~~  529 (550)
                                  ++++.+.|.|+|.+|  .+|-+.+.+.+.+++.+++=|.+|||||||+++     ..+         .
T Consensus       315 ------------~~~~~~vl~f~C~~R--~l~~~~~~~~~~~~e~l~~~~~vGf~tyGE~~~-----~~g---------~  366 (379)
T COG3287         315 ------------PKAPALVLVFDCALR--RLFLDTDKERQPLKEQLPEDPCVGFNTYGEQGP-----ITG---------E  366 (379)
T ss_pred             ------------cCCCceEEEEehhhh--hhhhhhhhhhhHHHHhcccCceecccccccccc-----ccc---------c
Confidence                        234899999999999  678899999999999999559999999999999     335         5


Q ss_pred             ccccccceeeeee
Q 008869          530 RYLHVYSTAYLVI  542 (550)
Q Consensus       530 ~~LH~yT~vl~lf  542 (550)
                      +..||+|.+-.+|
T Consensus       367 ~~h~Nqtf~~v~f  379 (379)
T COG3287         367 NVHHNQTFVGVAF  379 (379)
T ss_pred             ceeeeeEEEEEeC
Confidence            8999999876554

>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya

Probab=99.82  E-value=9.2e-20  Score=173.79  Aligned_cols=196  Identities=18%  Similarity=0.246  Sum_probs=139.6

Q ss_pred             CCCeEEeecccCcchHH-HHHHHHHhcCCCCceEEeeeccccccchhhhHHHhhhccccccccccccccccCceEEEEEe
Q 008869           90 RPHFAIANVGRGFNMRR-TLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLT  168 (550)
Q Consensus        90 ~P~~aia~~~~gfd~~~-~l~~i~~~~~~~~p~I~~~~~Giig~~~~~~e~~e~~~~~~~~g~~~~g~~~~g~e~~l~l~  168 (550)
                      ||+++|.|.+..||.+. ++..|++.++ .+++|||++.|+|....  .                 +.    .+.+++++
T Consensus         1 ~p~lvi~f~s~~~~~~~~i~~~l~~~~p-~~~iiG~st~g~i~~~~--~-----------------~~----~~~~v~~~   56 (198)
T PF08495_consen    1 RPDLVILFCSPEYDEEAKILEALRERLP-DAPIIGCSTAGEICGGN--E-----------------GY----SDDGVSLL   56 (198)
T ss_pred             CCEEEEEEecchhhhhHHHHHHHHHHCC-CCcEEEEccCchhCCCc--C-----------------CC----CCccEEEE
Confidence            79999999999999999 9999999999 99999999999887400  0                 00    00133333


Q ss_pred             eecCCCCeeeeeeccccCCCCCCCccccccCCCCCccccchhhcccccccccCCCCCCeEEEEecC-CCCChhHHHHHHH
Q 008869          169 VGYLPGLKVDAIPLLRRKEVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGK-EDMDQKPIIEKLD  247 (550)
Q Consensus       169 vg~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~di~~~~~~~s~~~~p~~~lv~~D-~~~d~~~ll~~L~  247 (550)
                        .|+...++++-.......      .|++. ...+++.++..++.        ......+|+|.| .+.+.++++++|.
T Consensus        57 --~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~--------~~~~~~~l~~~d~~~~~~~~~l~~l~  119 (198)
T PF08495_consen   57 --GFSSSEVRVFASLIDPFS------EDPIE-AAREALRDLVKSLD--------SDPSPFLLLFADGLSSSEEELLEGLY  119 (198)
T ss_pred             --EecCCcEEEEEEEccccC------CCcHH-HHHHHHHHHHhhcc--------ccCCcEEEEEeCCCCcCHHHHHHHHH
Confidence              345666655543221110      00000 11222222221111        111478999999 9999999999996


Q ss_pred             hhcCCCceEEccccccccccCCCccccccCCCccccCeEEEEEecCCCCCCCCCCEEEEEEeccCCeecCCCeEEEeecc
Q 008869          248 YAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRA  327 (550)
Q Consensus       248 ~al~~~~~I~GGla~~~~~~~gd~sr~~~~~~v~~~g~vgv~fa~d~~~~~~~g~i~~~~~vsqGc~PiGp~~~VT~v~~  327 (550)
                      .....+++|+||.+++......  ...+.+++++.+|+++++|         .+++++.+.+.|||+|+|++++||    
T Consensus       120 ~~~~~~~~i~GG~a~~~~~~~~--~~v~~~~~~~~~g~v~~~~---------~~~l~~~~~~~~g~~p~g~~~~VT----  184 (198)
T PF08495_consen  120 SSVGPDIPIFGGSAGDNLDFER--TYVFANGQVYSDGAVVVAF---------SGSLKIDSFVSHGWEPIGKPMTVT----  184 (198)
T ss_pred             HhcCCCceEEEEECCCCCcCCc--eEEEEeeeeccCcEEEEEE---------cCCceEEEEEecCeEeCCCCEEEE----
Confidence            6666789999999996432111  2233378877888999999         789999999999999999999999    


Q ss_pred             ccccCcceeccccccccccccCch
Q 008869          328 NHAEGSTWLTAKREGHHVILDGEQ  351 (550)
Q Consensus       328 ~~se~Nv~l~~~~~g~l~eLDG~p  351 (550)
                       ++++|+         |+||||+|
T Consensus       185 -~a~~~~---------I~eld~~P  198 (198)
T PF08495_consen  185 -KAEGNI---------IYELDGRP  198 (198)
T ss_pred             -EecCCE---------EEEECCcC
Confidence             999999         99999998

Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].

>PF10442 FIST_C: FIST C domain; InterPro: IPR019494 This entry represents a novel sensory domain, designated FIST C (short for F-box and intracellular signal transduction, C-terminal), which is present in signal transduction proteins from bacteria, archaea and eukaryotes

Probab=99.72  E-value=2.1e-17  Score=150.29  Aligned_cols=96  Identities=26%  Similarity=0.380  Sum_probs=83.7

Q ss_pred             eeeeeeccccccCc-ccceeeccCCCCCCEEEEEccCHHHHHHHHHHHHHHHHHhhhccCCCCcccccccccccCCCcee
Q 008869          388 ITTLAFHGIRGGDQ-EYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVL  466 (550)
Q Consensus       388 vR~l~v~~ilG~D~-~~~i~~~~~I~~G~~vqf~~RD~~aA~~dl~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~p~  466 (550)
                      +|.+     +++|+ +.+|+++.+|++|+.|+||.+|.+...++++++++++       .               ..+|.
T Consensus        37 ir~~-----~~~~~~~gsl~~~~~v~eG~~v~l~~~~~~~~~~~~~~~~~~~-------~---------------~~~p~   89 (136)
T PF10442_consen   37 IRSP-----LAIDPEDGSLTFAGDVPEGSEVQLMEGDPEDIIESAEEALEKA-------P---------------GPPPE   89 (136)
T ss_pred             Eeee-----eEEcCCCCEEEEeeecCCCCEEEEEcCCHHHHHHHHHHHHHhh-------c---------------CCCce
Confidence            6655     99999 5599999999999999999999999998888766554       1               35799


Q ss_pred             EEEEEeeCCCCcCCCC-CCccchHhHHhhCCC-CceeeeccccccCC
Q 008869          467 GGFIFSCCGRGNSFFG-GLNVDSFPFFENFPS-APLAGIFCGGEIGR  511 (550)
Q Consensus       467 gaL~fSC~GRG~~lfg-~~~~E~~~vre~Lg~-vPLaGFfa~GEIgp  511 (550)
                      ++|+|+|.||. .+++ ..+.|++.+++.+|+ +|++||||||||+|
T Consensus        90 ~~l~f~C~~R~-~~l~~~~~~e~~~~~~~~~~~~p~~Gf~t~GEi~~  135 (136)
T PF10442_consen   90 GALIFSCIGRR-LFLGERFDEELEAFQEILGGDAPFIGFYTYGEIGP  135 (136)
T ss_pred             EEEEEECCCCH-HHhCcchHHHHHHHHHHhCCCCCEEEEcccccccc
Confidence            99999999994 5555 788999999999994 99999999999998

The chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=96.84  E-value=0.00055  Score=51.30  Aligned_cols=36  Identities=28%  Similarity=0.422  Sum_probs=30.5

Q ss_pred             ccHHHHHHHHhhcCccccchhhhhcchhHHHhhhhh
Q 008869           23 DCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSIL   58 (550)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   58 (550)
                      -++|++++|+++||..+....++|||+|++.|.+.-
T Consensus         6 LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~   41 (48)
T PF00646_consen    6 LPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPR   41 (48)
T ss_dssp             S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHH
T ss_pred             CCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCC
Confidence            468999999999999999999999999999998754

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=96.66  E-value=0.00083  Score=50.57  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=29.8

Q ss_pred             ccHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008869           23 DCEDVLHNILSRLPAKSFASAACVNKSWNCVCNS   56 (550)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (550)
                      ..+|++.+|++.||....+.+++|||.|+++|+.
T Consensus         4 LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~   37 (47)
T PF12937_consen    4 LPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAND   37 (47)
T ss_dssp             S-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTC
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCC
Confidence            3589999999999999999999999999999953

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=96.08  E-value=0.003  Score=45.13  Aligned_cols=33  Identities=30%  Similarity=0.624  Sum_probs=30.4

Q ss_pred             cHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008869           24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCNS   56 (550)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (550)
                      .+|++.+|+++||....+.+++|||+|+.+|..
T Consensus         2 P~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        2 PDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            479999999999999999999999999999854

>PF10442 FIST_C: FIST C domain; InterPro: IPR019494 This entry represents a novel sensory domain, designated FIST C (short for F-box and intracellular signal transduction, C-terminal), which is present in signal transduction proteins from bacteria, archaea and eukaryotes

Probab=83.47  E-value=2.5  Score=38.19  Aligned_cols=67  Identities=24%  Similarity=0.282  Sum_probs=44.5

Q ss_pred             ceeeeecCCCChHHHHHHHHHHHhcCCCCCCeEEe--eccc----C--cchHHHHHHHHHhcCCCCceEEeeecccccc
Q 008869           62 RIASACSFKASAPIALQEVLDKVLLEPIRPHFAIA--NVGR----G--FNMRRTLDFLVKHLGLRTPIILSVVHGVMGR  132 (550)
Q Consensus        62 k~~~a~S~~p~~~~A~~ev~~q~l~~~~~P~~aia--~~~~----g--fd~~~~l~~i~~~~~~~~p~I~~~~~Giig~  132 (550)
                      ++-.....--+..+++++++.++  ...+|.+++.  |++.    |  ++.+  ++.+++.++..+|++|+.+.|+|++
T Consensus        61 ~v~l~~~~~~~~~~~~~~~~~~~--~~~~p~~~l~f~C~~R~~~l~~~~~~e--~~~~~~~~~~~~p~~Gf~t~GEi~~  135 (136)
T PF10442_consen   61 EVQLMEGDPEDIIESAEEALEKA--PGPPPEGALIFSCIGRRLFLGERFDEE--LEAFQEILGGDAPFIGFYTYGEIGP  135 (136)
T ss_pred             EEEEEcCCHHHHHHHHHHHHHhh--cCCCceEEEEEECCCCHHHhCcchHHH--HHHHHHHhCCCCCEEEEcccccccc
Confidence            33333333333345555555555  4477888777  6666    2  2333  8889999997899999999999874

The chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	550
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 2e-08
 Identities = 80/600 (13%), Positives = 161/600 (26%), Gaps = 200/600 (33%)

Query: 1   MDTEKPSSSKKKKKTIEISSLA-----DC---EDVLHNILSRLPAKSFASAACVNKSWNC 52
           MD E      + K  + +   A     DC   +D+  +ILS                   
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS-----------------KE 49

Query: 53  VCNSILSRPRIASACSF---------KASAPIALQEVLDK---VLLEPIR---------- 90
             + I+      S             +      ++EVL      L+ PI+          
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 91  --------------PHFAIANVGRGFNMRRTLDFLVKHL-GLRTPIILSVVHGVM---GR 132
                           FA  NV R     +    L + L  LR P    ++ G +   G+
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSR----LQPYLKLRQALLELR-PAKNVLIDG-VLGSGK 163

Query: 133 DALTDE-FREVKFQDHEDIGV---NRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEV 188
             +  +     K Q   D  +   N   C               P   ++ +  L  +  
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-------------PETVLEMLQKLLYQID 210

Query: 189 PVDDTYVDVYLAPPVPM------IDQFVM------------DIQN--------------Y 216
           P   +  D      + +      + + +             ++QN               
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 217 TTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDL-RNV 275
           TT        +         +D   +    D   S+          ++      DL R V
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL---L-----LKYLDCRPQDLPREV 322

Query: 276 C-GNPAFISDAVALVFASDKDKP-------HGTGEIQFHLAMSEGVSAIGP---RH--KA 322
              NP      ++++  S +D         H   + +    +   ++ + P   R     
Sbjct: 323 LTTNPR----RLSIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLEPAEYRKMFDR 377

Query: 323 VSVRANHAEGST------WLTAKREGHHVILDGEQILRHIDQLENRF--------PQVEL 368
           +SV    A   T      W    +       D   ++   ++L              + +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKS------DVMVVV---NKLHKYSLVEKQPKESTISI 428

Query: 369 YVGVTKRRKCSIGSEKS---RLITTLAFHGIRGGDQEYL---YVDGVGIKTGDYFQFYQP 422
              +    K  + +E +    ++    ++  +  D + L   Y+D        YF  +  
Sbjct: 429 P-SIYLELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPYLDQ-------YFYSHIG 478

Query: 423 DHNAALAACRNASE---------NIRNL--KLNSSGKGFLGRRDVANSIDRKEVLGGFIF 471
            H   L    +            + R L  K+      +     + N++ + +    +I 
Sbjct: 479 HH---LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 68/442 (15%), Positives = 113/442 (25%), Gaps = 156/442 (35%)

Query: 1   MDTEKPSSSKKKKKTIEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNC------VC 54
             T +   S   K  I        +  L  +L   P +            NC      V 
Sbjct: 212 NWTSRSDHSSNIKLRIH-----SIQAELRRLLKSKPYE------------NCLLVLLNVQ 254

Query: 55  NSILSRPRIASACSFKASAPIAL----QEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDF 110
           N      +  +A  F  S  I L    ++V D  L      H ++ +             
Sbjct: 255 N-----AKAWNA--FNLSCKILLTTRFKQVTD-FLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 111 LVKHLGLRT-----------PIILSVVHGVMGRD--ALTDEFREVKFQDHEDIGVNRGIC 157
           L+K+L  R            P  LS++     RD  A  D ++ V       I       
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSII-AESIRDGLATWDNWKHVNCDKLTTI------- 358

Query: 158 TCGQQSGIVLTVGYLPGLKVDAIPLLRRKEVPVDDTYVDVYLAP---PVP---------- 204
                  I  ++  L        P   RK       +  + + P    +P          
Sbjct: 359 -------IESSLNVLE-------PAEYRK------MFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 205 MIDQFVMDIQNYTTSVS-----GCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGD 259
           +I   VM + N     S        S + I       +  + +  KL+   +++   V  
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISI-----PSIYLE-LKVKLENEYALHRSIVD- 451

Query: 260 ERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPR 319
                 Y      +    +              D   P+       H+            
Sbjct: 452 -----HYNI---PKTFDSD--------------DLIPPYLDQYFYSHIG----------H 479

Query: 320 HKAVSVRANHAEGST----------WLTAKREGHHVILDGEQILRHIDQLENRFPQVELY 369
           H        H E  T          +L  K     +  D          + N   Q++ Y
Sbjct: 480 HLK---NIEHPERMTLFRMVFLDFRFLEQK-----IRHDSTA-WNASGSILNTLQQLKFY 530

Query: 370 VGVTKRRKCSIGSEKSRLITTL 391
               K   C    +  RL+  +
Sbjct: 531 ----KPYICDNDPKYERLVNAI 548

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 10 KKKKKTIEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56
          ++    +   SL D  ++L  I S L        + V K W  + + 
Sbjct: 1  RENFPGVSWDSLPD--ELLLGIFSCLCLPELLKVSGVCKRWYRLASD 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	550
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	97.09
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	95.27
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	91.5
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	90.69
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	86.54
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	83.71
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	82.04

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=97.09  E-value=0.00023  Score=53.65  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=31.0

Q ss_pred             ccHHHHHHHHhhcCccccchhhhhcchhHHHhh
Q 008869           23 DCEDVLHNILSRLPAKSFASAACVNKSWNCVCN   55 (550)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (550)
                      -.+|++.+||++||....+.++||||.|+.+++
T Consensus        12 LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A           12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             SCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            468999999999999999999999999999886

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=95.27  E-value=0.006  Score=62.31  Aligned_cols=34  Identities=24%  Similarity=0.391  Sum_probs=31.2

Q ss_pred             cccHHHHHHHHhhcCccccc-hhhhhcchhHHHhh
Q 008869           22 ADCEDVLHNILSRLPAKSFA-SAACVNKSWNCVCN   55 (550)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   55 (550)
                      ...+|||..||+|||+.+.+ .++||||.|+.+.+
T Consensus        53 ~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~   87 (297)
T 2e31_A           53 ELPEPLLLRVLAELPATELVQACRLVCLRWKELVD   87 (297)
T ss_dssp             SSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred             hCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence            34789999999999999999 99999999998875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=91.50  E-value=0.065  Score=54.56  Aligned_cols=30  Identities=43%  Similarity=0.555  Sum_probs=28.2

Q ss_pred             HHHHHHHhhcCccccchhhhhcchhHHHhh
Q 008869           26 DVLHNILSRLPAKSFASAACVNKSWNCVCN   55 (550)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (550)
                      +|+..||+.|++.+++.++||||.|+.+++
T Consensus        21 ~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~   50 (435)
T 1p22_A           21 HIAENILSYLDAKSLCAAELVCKEWYRVTS   50 (435)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence            499999999999999999999999998775

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=90.69  E-value=0.083  Score=53.68  Aligned_cols=33  Identities=15%  Similarity=0.276  Sum_probs=31.0

Q ss_pred             cHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008869           24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCNS   56 (550)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (550)
                      .++|+..||+.||+.++..+++|||.||++++.
T Consensus        19 p~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           19 PFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             CHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999998875

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=86.54  E-value=0.23  Score=50.41  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=30.1

Q ss_pred             cHHHHHHHHhhcCccccchhhhhcchhHHHhh
Q 008869           24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCN   55 (550)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (550)
                      .++++..||+.|++.+.+.++||||.|+.+|+
T Consensus        23 p~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~   54 (445)
T 2ovr_B           23 PKELALYVLSFLEPKDLLQAAQTCRYWRILAE   54 (445)
T ss_dssp             CHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcC
Confidence            58999999999999999999999999999876

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=83.71  E-value=0.36  Score=49.46  Aligned_cols=33  Identities=27%  Similarity=0.311  Sum_probs=30.8

Q ss_pred             cHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008869           24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCNS   56 (550)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (550)
                      ..|++++||+-|++...+.++||||.|+.+++.
T Consensus         9 P~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D   41 (312)
T 3l2o_B            9 PIDVQLYILSFLSPHDLCQLGSTNHYWNETVRD   41 (312)
T ss_dssp             CHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTC
T ss_pred             CHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcc
Confidence            479999999999999999999999999999874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=82.04  E-value=0.48  Score=46.44  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=30.8

Q ss_pred             ccHHHHHHHHhhcCccccchhhhhcchhHHHhh
Q 008869           23 DCEDVLHNILSRLPAKSFASAACVNKSWNCVCN   55 (550)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (550)
                      -.+|++..|++.||......++.|||.|+.+|.
T Consensus        12 LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~   44 (336)
T 2ast_B           12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (336)
T ss_dssp             SCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHT
T ss_pred             CCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	550
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	4e-07
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	1e-05
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	5e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-04

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (105), Expect = 4e-07
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 25 EDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56
          +++L  I S L        + V K W  + + 
Sbjct: 6  DELLLGIFSCLCLPELLKVSGVCKRWYRLASD 37

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 18 ISSL--ADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56
          I++L     + +  NILS L AKS  +A  V K W  V + 
Sbjct: 11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSD 51

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 5e-05
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 18 ISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56
          IS L    ++   +LS L  K    AA   + W  +   
Sbjct: 19 ISLLPK--ELALYVLSFLEPKDLLQAAQTCRYWRILAED 55

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 18 ISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56
          I+SL    ++   I + L  +   ++  V+++WN +   
Sbjct: 6  ITSLPF--EISLKIFNYLQFEDIINSLGVSQNWNKIIRK 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	550
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	97.69
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.69
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	96.45
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	96.3

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=7.1e-06  Score=58.02  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=31.6

Q ss_pred             ccHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008869           23 DCEDVLHNILSRLPAKSFASAACVNKSWNCVCNS   56 (550)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (550)
                      ..+|++++||+.||..+.+.++||||.||++|+.
T Consensus         4 LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~   37 (41)
T d1fs1a1           4 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD   37 (41)
T ss_dssp             SCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTC
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence            3689999999999999999999999999999873

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00023  Score=58.28  Aligned_cols=33  Identities=21%  Similarity=0.317  Sum_probs=31.3

Q ss_pred             cHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008869           24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCNS   56 (550)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (550)
                      .+||++.||+.||+.+++.++||||.|+.+|+.
T Consensus        23 P~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~   55 (102)
T d2ovrb1          23 PKELALYVLSFLEPKDLLQAAQTCRYWRILAED   55 (102)
T ss_dssp             CHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTC
T ss_pred             CHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC
Confidence            689999999999999999999999999999864

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.00046  Score=56.67  Aligned_cols=33  Identities=15%  Similarity=0.276  Sum_probs=30.9

Q ss_pred             cHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008869           24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCNS   56 (550)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (550)
                      .++|+..||+.|++.+.+.+++|||+|+++|+.
T Consensus        10 P~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~   42 (100)
T d1nexb1          10 PFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   42 (100)
T ss_dssp             CHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHT
T ss_pred             CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Confidence            579999999999999999999999999999863

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.00065  Score=57.24  Aligned_cols=39  Identities=38%  Similarity=0.536  Sum_probs=33.8

Q ss_pred             eeccc--ccHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008869           18 ISSLA--DCEDVLHNILSRLPAKSFASAACVNKSWNCVCNS   56 (550)
Q Consensus        18 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (550)
                      |+.|-  ..++|+.+||+-|++.+.+.++||||.|+.+|+.
T Consensus        11 i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d   51 (118)
T d1p22a1          11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSD   51 (118)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC
Confidence            45554  3578999999999999999999999999999973