Citrus Sinensis ID: 008916

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
MRDVNTDLFDPRTEMDSDISRSASSSDGDFGFAFNDSNFSDRLLRIEIMGDPPESRSDGEGCTSIADWARDRKRRREDIKKDNGLDLSACPEEQILNQPDMDDCVGCENQDEEVEAMIEGSPSGDEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDHDVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERPRQQCVVYLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIRH
ccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHccccccccccEEEEEccEEEEEEHHHHHcccHHHHHHHccccccccccEEEEEEccccHHHHHHHHHHHHccEEEEcccccHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEccccccccEEEEEEEcccEEEEEEcccccccccEEcccccEEEEEEEEccEEEEEEEEEcccccccEEEEEEEEcccccccEEEEEEEEEEEcccccccccccccccEEEcccccccccccccccccEEEEccccEEEccEEEEEEEEEEcc
cccccccccccccccccccccccccccccccEEEccccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEEEccHEEEEcccHHHHHHHcccccHccccEEEEEEccccHHHHHHHHHHHHccEEEEcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHccHcccccccccccEEEccccEEccEEEEEEEcccccEEEEcccccccccEEEEcEEEEEEEEEEcccccEEEEcccccccccccEEEEEEEEcccccEEEEEEEEEEEEccccccEEEcccccEEEccccccccccccccccHHHHcccccHHEccEEEEEEEEEEcc
mrdvntdlfdprtemdsdisrsasssdgdfgfafndsnfsdRLLRIEimgdppesrsdgegctsIADWARDRKRRREdikkdngldlsacpeeqilnqpdmddcvgcenQDEEVEAMiegspsgdeaangnesswsmdcsTVVRVKTLhisspilaakspfFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYsntlsttaaPALLDVLMAADKFEVASCMRYCSRllrnmpmtpeSALLYLelpssvlmgeavqPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAIlssddlqiasEDAVYDFVLKWARAQYPRVEERREVLGSRLARfirfphmtcRKLKKvltcndfdhDVASKLVLEALFFkaeaphrqrtlaaeESVTLNRRFVEraykyrpvkvveferprqqCVVYLDLKreecenlfpsgrvysqafhlggqgfflsahcnmdqqssfhcfglflgmqekgsvSFAVDYefaarskpteefvskykgnytftggkavgyrnlfaipwtsfmaddsLYFINGILHLRAELTIRH
mrdvntdlfdprtemdsdisrsasssdgdfgfAFNDSNFSDRLLRIEIMgdppesrsdgegctsiadwardrkrrredikkdngldlsacpeeqilnqpdMDDCVGCENQDEEVEAMIEGSPSGDEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARaqyprveerrEVLGsrlarfirfphmtCRKLKKVLTCNDFDHDVASKLVLEALFFKAeaphrqrtlaaeesvtlnrrfveraykyrpvkvveferprqQCVVYLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAarskpteefvskyKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIRH
MRDVNTDLFDPRTEMdsdisrsasssdgdfgfafndsnfsdRLLRIEIMGDPPESRSDGEGCTSIADWArdrkrrredikkdNGLDLSACPEEQILNQPDMDDCVGCENQDEEVEAMIEGSPSGDEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDHDVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERPRQQCVVYLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIRH
*******************************FAFN***F*DRLLRI*****************************************************************************************SMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGM*****RHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDHDVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERPRQQCVVYLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELT***
******D*FDPRTE***************FGFAFNDSNFSDRLLRIEIMGD**********************************************************************************SWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDHDVASKLVLEALFF*********************RFVERAYKYRPVKVVEFERPRQQCVVYLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIR*
MRDVNTDLFDPRTE***********SDGDFGFAFNDSNFSDRLLRIEIMGDP*********CTSIADWARDRKRRREDIKKDNGLDLSACPEEQILNQPDMDDCVGCENQDEEVEAMIEG*************SWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDHDVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERPRQQCVVYLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIRH
*******LF*PRTEMDS*******SSDGDFGFAFNDSNFSDRLLRIEIMGDP*****************R*RKRR*EDIK*DN*LDLSACPEEQ**NQPDMDDCVGCENQDEEVEAMIEGSPSGDEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDHDVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERPRQQCVVYLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIRH
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRDVNTDLFDPRTEMDSDISRSASSSDGDFGFAFNDSNFSDRLLRIEIMGDPPESRSDGEGCTSIADWARDRKRRREDIKKDNGLDLSACPEEQILNQPDMDDCVGCENQDEEVEAMIEGSPSGDEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDHDVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERPRQQCVVYLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIRH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query549 2.2.26 [Sep-21-2011]
Q9FPW6561 BTB/POZ domain-containing yes no 0.990 0.969 0.830 0.0
O82343561 BTB/POZ domain-containing no no 0.989 0.967 0.829 0.0
O04615527 BTB/POZ domain-containing no no 0.938 0.977 0.592 1e-173
Q8NFY9 601 Kelch repeat and BTB doma yes no 0.353 0.322 0.278 4e-12
B1H285 575 Kelch repeat and BTB doma yes no 0.338 0.323 0.28 9e-12
Q3UQV5 599 Kelch repeat and BTB doma yes no 0.353 0.323 0.274 1e-11
Q6TDP4 642 Kelch-like protein 17 OS= no no 0.353 0.302 0.287 2e-11
Q8K430 640 Kelch-like protein 17 OS= no no 0.347 0.298 0.291 2e-11
Q6TDP3 640 Kelch-like protein 17 OS= no no 0.347 0.298 0.291 2e-11
O94889 574 Kelch-like protein 18 OS= no no 0.326 0.311 0.288 4e-11
>sp|Q9FPW6|POB1_ARATH BTB/POZ domain-containing protein POB1 OS=Arabidopsis thaliana GN=POB1 PE=2 SV=2 Back     alignment and function desciption
 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/550 (83%), Positives = 500/550 (90%), Gaps = 6/550 (1%)

Query: 5   NTDLFDPRTEMDSDISRSASSSDGDFGFAFNDSNFSDRLLRIEIMGDPPESRSDGEGCTS 64
           NTDLFDP+T+MD D +R  SSSDGDFGFAFNDSNFSDRLLRIEIMG P +SRS+ EGCTS
Sbjct: 7   NTDLFDPKTQMDPDFTRHGSSSDGDFGFAFNDSNFSDRLLRIEIMGGPSDSRSEVEGCTS 66

Query: 65  IADWARDRKRRREDIKKDNGL---DLSACPEEQILN--QPDMDDCVGCENQDEEV-EAMI 118
           IADWAR RKRRREDIKK++G+   D+ ACPEEQIL   QPDMD C G EN D+E  EAM+
Sbjct: 67  IADWARHRKRRREDIKKESGVTISDIVACPEEQILTDEQPDMDGCPGGENPDDEGGEAMV 126

Query: 119 EGSPSGDEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHV 178
           E + SGDE    +E +W MDCSTVVRVK LHISSPILAAKSPFFYKLFSNGM+ESEQRHV
Sbjct: 127 EEALSGDEEETSSEPNWGMDCSTVVRVKELHISSPILAAKSPFFYKLFSNGMRESEQRHV 186

Query: 179 ALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPM 238
            LRINASEEAALMELLNFMYSN +S T APALLDVLMAADKFEVASCMRYCSRLLRNMPM
Sbjct: 187 TLRINASEEAALMELLNFMYSNAVSVTTAPALLDVLMAADKFEVASCMRYCSRLLRNMPM 246

Query: 239 TPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSS 298
           TPESALLYLELPSSVLM +AVQPLTDAA+Q+LA+RYKD+TKF +EVM+LPLAG+EAILSS
Sbjct: 247 TPESALLYLELPSSVLMAKAVQPLTDAAKQFLAARYKDITKFHEEVMSLPLAGIEAILSS 306

Query: 299 DDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDF 358
           D+LQIASEDAVYDF+LKWARAQYP +EERRE+LGSRLA  IRFP MTCRKLKKVLTC+DF
Sbjct: 307 DELQIASEDAVYDFILKWARAQYPCLEERREILGSRLALSIRFPFMTCRKLKKVLTCSDF 366

Query: 359 DHDVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERPRQQC 418
           +H++ASKLVLEALFFKAEAPHRQR+LA+EES +LNRR +ERAYKYRPVKVVEFE PR QC
Sbjct: 367 EHEIASKLVLEALFFKAEAPHRQRSLASEESASLNRRLIERAYKYRPVKVVEFELPRPQC 426

Query: 419 VVYLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGS 478
           VVYLDLKREEC  LFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGS
Sbjct: 427 VVYLDLKREECGGLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGS 486

Query: 479 VSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGI 538
           VSF VDYEF+ARSKP E+F+SKYKGNYTFTGGKAVGYRNLF +PWTSF+A+DS YFINGI
Sbjct: 487 VSFGVDYEFSARSKPAEDFISKYKGNYTFTGGKAVGYRNLFGVPWTSFIAEDSQYFINGI 546

Query: 539 LHLRAELTIR 548
           LHLRAELTI+
Sbjct: 547 LHLRAELTIK 556
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|O82343|Y2626_ARATH BTB/POZ domain-containing protein At2g46260 OS=Arabidopsis thaliana GN=At2g46260 PE=2 SV=2 Back     alignment and function description
>sp|O04615|Y4116_ARATH BTB/POZ domain-containing protein At4g01160 OS=Arabidopsis thaliana GN=At4g01160 PE=3 SV=1 Back     alignment and function description
>sp|Q8NFY9|KBTB8_HUMAN Kelch repeat and BTB domain-containing protein 8 OS=Homo sapiens GN=KBTBD8 PE=2 SV=2 Back     alignment and function description
>sp|B1H285|KBTB8_RAT Kelch repeat and BTB domain-containing protein 8 OS=Rattus norvegicus GN=Kbtbd8 PE=2 SV=1 Back     alignment and function description
>sp|Q3UQV5|KBTB8_MOUSE Kelch repeat and BTB domain-containing protein 8 OS=Mus musculus GN=Kbtbd8 PE=2 SV=1 Back     alignment and function description
>sp|Q6TDP4|KLH17_HUMAN Kelch-like protein 17 OS=Homo sapiens GN=KLHL17 PE=2 SV=1 Back     alignment and function description
>sp|Q8K430|KLH17_RAT Kelch-like protein 17 OS=Rattus norvegicus GN=Klhl17 PE=1 SV=1 Back     alignment and function description
>sp|Q6TDP3|KLH17_MOUSE Kelch-like protein 17 OS=Mus musculus GN=Klhl17 PE=2 SV=1 Back     alignment and function description
>sp|O94889|KLH18_HUMAN Kelch-like protein 18 OS=Homo sapiens GN=KLHL18 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query549
255541774549 atpob1, putative [Ricinus communis] gi|2 1.0 1.0 0.890 0.0
224064139556 predicted protein [Populus trichocarpa] 1.0 0.987 0.884 0.0
224127832547 predicted protein [Populus trichocarpa] 0.990 0.994 0.878 0.0
225454420553 PREDICTED: BTB/POZ domain-containing pro 1.0 0.992 0.860 0.0
449432076553 PREDICTED: BTB/POZ domain-containing pro 0.998 0.990 0.861 0.0
307136357552 ATPOB protein binding [Cucumis melo subs 0.994 0.989 0.858 0.0
356573187553 PREDICTED: BTB/POZ domain-containing pro 0.998 0.990 0.848 0.0
356506034553 PREDICTED: BTB/POZ domain-containing pro 0.998 0.990 0.846 0.0
297817482562 BTB/POZ domain-containing protein [Arabi 0.990 0.967 0.833 0.0
18412063561 POZ/BTB containin G-protein 1 [Arabidops 0.990 0.969 0.830 0.0
>gi|255541774|ref|XP_002511951.1| atpob1, putative [Ricinus communis] gi|223549131|gb|EEF50620.1| atpob1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1031 bits (2666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/549 (89%), Positives = 520/549 (94%)

Query: 1   MRDVNTDLFDPRTEMDSDISRSASSSDGDFGFAFNDSNFSDRLLRIEIMGDPPESRSDGE 60
           MR  N+DLFDPRTEM+S  SR ASSSDGDFGFAFNDSNFSDRLLRIEIM + P++R DGE
Sbjct: 1   MRGSNSDLFDPRTEMESVYSRGASSSDGDFGFAFNDSNFSDRLLRIEIMDESPDNRCDGE 60

Query: 61  GCTSIADWARDRKRRREDIKKDNGLDLSACPEEQILNQPDMDDCVGCENQDEEVEAMIEG 120
           GC SIADWAR RKRRREDIKKDN +++SA  EEQILNQPDM+DCVGCENQDE+  AMIE 
Sbjct: 61  GCNSIADWARHRKRRREDIKKDNAVEVSAGAEEQILNQPDMEDCVGCENQDEDAVAMIEE 120

Query: 121 SPSGDEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVAL 180
            PSGDEA +GNES+WSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGM+ESEQRHV L
Sbjct: 121 PPSGDEAVDGNESTWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMRESEQRHVTL 180

Query: 181 RINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTP 240
           RINASEEAALMELLNFMYSN+LST  AP LLDVLMAADKFEVASCMRYCSR LRNM MTP
Sbjct: 181 RINASEEAALMELLNFMYSNSLSTNTAPGLLDVLMAADKFEVASCMRYCSRQLRNMSMTP 240

Query: 241 ESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDD 300
           ESALLYLELPSSVLM EAVQPLTDAA+QYLASRY+DMTK+Q+EVM+LPLAG+EAILSSDD
Sbjct: 241 ESALLYLELPSSVLMAEAVQPLTDAAKQYLASRYRDMTKYQEEVMSLPLAGIEAILSSDD 300

Query: 301 LQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDH 360
           LQ+ASEDAVYDFVLKWAR QYP++EERREVLG+RLARFIRFP+MTCRKLKKVLTC+DFDH
Sbjct: 301 LQVASEDAVYDFVLKWARTQYPKLEERREVLGARLARFIRFPYMTCRKLKKVLTCSDFDH 360

Query: 361 DVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERPRQQCVV 420
           DVASKLVLEALFFKAEAPHRQR+LAAEES +LNRRFVERAYKYRPVKVVEFE PRQQCVV
Sbjct: 361 DVASKLVLEALFFKAEAPHRQRSLAAEESASLNRRFVERAYKYRPVKVVEFELPRQQCVV 420

Query: 421 YLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVS 480
           YLDLKREEC NLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKG+VS
Sbjct: 421 YLDLKREECANLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGNVS 480

Query: 481 FAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILH 540
           FAVDYEFAAR+KPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFING+LH
Sbjct: 481 FAVDYEFAARAKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGVLH 540

Query: 541 LRAELTIRH 549
           LRAELTIRH
Sbjct: 541 LRAELTIRH 549

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224064139|ref|XP_002301391.1| predicted protein [Populus trichocarpa] gi|222843117|gb|EEE80664.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224127832|ref|XP_002320175.1| predicted protein [Populus trichocarpa] gi|222860948|gb|EEE98490.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225454420|ref|XP_002279915.1| PREDICTED: BTB/POZ domain-containing protein POB1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449432076|ref|XP_004133826.1| PREDICTED: BTB/POZ domain-containing protein At2g46260-like [Cucumis sativus] gi|449480287|ref|XP_004155851.1| PREDICTED: BTB/POZ domain-containing protein At2g46260-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307136357|gb|ADN34171.1| ATPOB protein binding [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|356573187|ref|XP_003554745.1| PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] Back     alignment and taxonomy information
>gi|356506034|ref|XP_003521793.1| PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] Back     alignment and taxonomy information
>gi|297817482|ref|XP_002876624.1| BTB/POZ domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297322462|gb|EFH52883.1| BTB/POZ domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18412063|ref|NP_567115.1| POZ/BTB containin G-protein 1 [Arabidopsis thaliana] gi|12006855|gb|AAG44951.1|AF292397_1 POZ/BTB containing-protein AtPOB1 [Arabidopsis thaliana] gi|133778840|gb|ABO38760.1| At3g61600 [Arabidopsis thaliana] gi|332646709|gb|AEE80230.1| POZ/BTB containin G-protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query549
TAIR|locus:2082827561 POB1 "POZ/BTB containin G-prot 0.990 0.969 0.772 2.1e-226
TAIR|locus:2063026561 LRB1 "light-response BTB 1" [A 0.989 0.967 0.771 7.4e-224
UNIPROTKB|Q6TDP4 642 KLHL17 "Kelch-like protein 17" 0.404 0.345 0.280 4.4e-12
MGI|MGI:2678948 640 Klhl17 "kelch-like 17" [Mus mu 0.404 0.346 0.280 5.7e-12
RGD|708444 640 Klhl17 "kelch-like family memb 0.404 0.346 0.280 5.7e-12
MGI|MGI:2661430 599 Kbtbd8 "kelch repeat and BTB ( 0.353 0.323 0.278 3e-11
ZFIN|ZDB-GENE-050904-1 623 kbtbd12 "kelch repeat and BTB 0.402 0.354 0.270 1.5e-10
UNIPROTKB|O60662 606 KLHL41 "Kelch-like protein 41" 0.426 0.386 0.244 3.8e-10
FB|FBgn0037978 575 KLHL18 [Drosophila melanogaste 0.351 0.335 0.228 4.5e-10
UNIPROTKB|A4FV78 606 KBTBD10 "Uncharacterized prote 0.364 0.330 0.265 6.3e-10
TAIR|locus:2082827 POB1 "POZ/BTB containin G-protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2185 (774.2 bits), Expect = 2.1e-226, P = 2.1e-226
 Identities = 425/550 (77%), Positives = 466/550 (84%)

Query:     5 NTDLFDPRTEMXXXXXXXXXXXXXXXXXXXXXXXXXXRLLRIEIMGDPPESRSDGEGCTS 64
             NTDLFDP+T+M                          RLLRIEIMG P +SRS+ EGCTS
Sbjct:     7 NTDLFDPKTQMDPDFTRHGSSSDGDFGFAFNDSNFSDRLLRIEIMGGPSDSRSEVEGCTS 66

Query:    65 IADWAXXXXXXXXXXXXXNGL---DLSACPEEQILN--QPDMDDCVGCENQDEEV-EAMI 118
             IADWA             +G+   D+ ACPEEQIL   QPDMD C G EN D+E  EAM+
Sbjct:    67 IADWARHRKRRREDIKKESGVTISDIVACPEEQILTDEQPDMDGCPGGENPDDEGGEAMV 126

Query:   119 EGSPSGDEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHV 178
             E + SGDE    +E +W MDCSTVVRVK LHISSPILAAKSPFFYKLFSNGM+ESEQRHV
Sbjct:   127 EEALSGDEEETSSEPNWGMDCSTVVRVKELHISSPILAAKSPFFYKLFSNGMRESEQRHV 186

Query:   179 ALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPM 238
              LRINASEEAALMELLNFMYSN +S T APALLDVLMAADKFEVASCMRYCSRLLRNMPM
Sbjct:   187 TLRINASEEAALMELLNFMYSNAVSVTTAPALLDVLMAADKFEVASCMRYCSRLLRNMPM 246

Query:   239 TPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSS 298
             TPESALLYLELPSSVLM +AVQPLTDAA+Q+LA+RYKD+TKF +EVM+LPLAG+EAILSS
Sbjct:   247 TPESALLYLELPSSVLMAKAVQPLTDAAKQFLAARYKDITKFHEEVMSLPLAGIEAILSS 306

Query:   299 DDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDF 358
             D+LQIASEDAVYDF+LKWARAQYP +EERRE+LGSRLA  IRFP MTCRKLKKVLTC+DF
Sbjct:   307 DELQIASEDAVYDFILKWARAQYPCLEERREILGSRLALSIRFPFMTCRKLKKVLTCSDF 366

Query:   359 DHDVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERPRQQC 418
             +H++ASKLVLEALFFKAEAPHRQR+LA+EES +LNRR +ERAYKYRPVKVVEFE PR QC
Sbjct:   367 EHEIASKLVLEALFFKAEAPHRQRSLASEESASLNRRLIERAYKYRPVKVVEFELPRPQC 426

Query:   419 VVYLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGS 478
             VVYLDLKREEC  LFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGS
Sbjct:   427 VVYLDLKREECGGLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGS 486

Query:   479 VSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGI 538
             VSF VDYEF+ARSKP E+F+SKYKGNYTFTGGKAVGYRNLF +PWTSF+A+DS YFINGI
Sbjct:   487 VSFGVDYEFSARSKPAEDFISKYKGNYTFTGGKAVGYRNLFGVPWTSFIAEDSQYFINGI 546

Query:   539 LHLRAELTIR 548
             LHLRAELTI+
Sbjct:   547 LHLRAELTIK 556
GO:0005737 "cytoplasm" evidence=ISM
GO:0009954 "proximal/distal pattern formation" evidence=RCA
GO:0010227 "floral organ abscission" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=IDA
GO:0010114 "response to red light" evidence=IGI
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0046982 "protein heterodimerization activity" evidence=IPI
TAIR|locus:2063026 LRB1 "light-response BTB 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6TDP4 KLHL17 "Kelch-like protein 17" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2678948 Klhl17 "kelch-like 17" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|708444 Klhl17 "kelch-like family member 17" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2661430 Kbtbd8 "kelch repeat and BTB (POZ) domain containing 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050904-1 kbtbd12 "kelch repeat and BTB (POZ) domain containing 12" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O60662 KLHL41 "Kelch-like protein 41" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0037978 KLHL18 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|A4FV78 KBTBD10 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O82343Y2626_ARATHNo assigned EC number0.82940.98900.9679nono
Q9FPW6POB1_ARATHNo assigned EC number0.83090.99080.9696yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.II.1232.1
hypothetical protein (550 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query549
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 6e-13
smart00875101 smart00875, BACK, BTB And C-terminal Kelch 1e-10
pfam07707101 pfam07707, BACK, BTB And C-terminal Kelch 5e-10
pfam00651101 pfam00651, BTB, BTB/POZ domain 6e-08
PHA03098 534 PHA03098, PHA03098, kelch-like protein; Provisiona 8e-07
cd13342147 cd13342, PH-GRAM_MTMR4, Myotubularian (MTM) relate 4e-04
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information 
 Score = 64.2 bits (157), Expect = 6e-13
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 3/98 (3%)

Query: 138 DCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFM 197
           D + VV  K  H    +LAA SP+F  LFS+  KES++  +   ++         LLNF+
Sbjct: 1   DVTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEI--YLDDVSPEDFRALLNFL 58

Query: 198 YSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRN 235
           Y+  L       + ++L  AD  ++   +  C   L  
Sbjct: 59  YTGKLDLPEEN-VEELLELADYLQIPGLVELCEEFLLK 95

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97
>gnl|CDD|197943 smart00875, BACK, BTB And C-terminal Kelch Back     alignment and domain information
>gnl|CDD|149006 pfam07707, BACK, BTB And C-terminal Kelch Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional Back     alignment and domain information
>gnl|CDD|241496 cd13342, PH-GRAM_MTMR4, Myotubularian (MTM) related 4 protein (MTMR4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 549
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 100.0
PHA02713557 hypothetical protein; Provisional 100.0
PHA02790480 Kelch-like protein; Provisional 100.0
PHA03098534 kelch-like protein; Provisional 100.0
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.97
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.91
KOG4682488 consensus Uncharacterized conserved protein, conta 99.78
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.76
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 99.72
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.67
KOG4591280 consensus Uncharacterized conserved protein, conta 99.64
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 99.63
PHA02713557 hypothetical protein; Provisional 99.61
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.56
PHA03098534 kelch-like protein; Provisional 99.5
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.49
PHA02790480 Kelch-like protein; Provisional 99.34
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 99.2
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 99.11
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 99.1
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 99.09
PLN02153341 epithiospecifier protein 99.05
PLN02153341 epithiospecifier protein 99.02
PLN02193470 nitrile-specifier protein 98.99
KOG4693392 consensus Uncharacterized conserved protein, conta 98.93
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.91
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.83
PLN02193470 nitrile-specifier protein 98.77
KOG0511516 consensus Ankyrin repeat protein [General function 98.24
KOG4693 392 consensus Uncharacterized conserved protein, conta 98.03
KOG2838401 consensus Uncharacterized conserved protein, conta 97.88
KOG0783 1267 consensus Uncharacterized conserved protein, conta 97.85
PF1396450 Kelch_6: Kelch motif 97.67
KOG2838401 consensus Uncharacterized conserved protein, conta 97.57
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 97.56
KOG2716230 consensus Polymerase delta-interacting protein PDI 97.44
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 97.41
KOG1230 521 consensus Protein containing repeated kelch motifs 97.33
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 97.15
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 97.14
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.11
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 96.97
KOG3473112 consensus RNA polymerase II transcription elongati 96.55
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 96.44
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 96.34
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 95.4
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 94.93
KOG1665302 consensus AFH1-interacting protein FIP2, contains 94.12
COG3055 381 Uncharacterized protein conserved in bacteria [Fun 94.09
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 93.55
smart0061247 Kelch Kelch domain. 93.43
KOG2714465 consensus SETA binding protein SB1 and related pro 92.97
KOG1230 521 consensus Protein containing repeated kelch motifs 92.49
PF1385442 Kelch_5: Kelch motif 90.64
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 90.52
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 90.28
KOG3840438 consensus Uncharaterized conserved protein, contai 88.26
smart0061247 Kelch Kelch domain. 87.11
COG3055 381 Uncharacterized protein conserved in bacteria [Fun 86.45
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 86.29
KOG1778319 consensus CREB binding protein/P300 and related TA 86.21
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 86.18
KOG0511516 consensus Ankyrin repeat protein [General function 85.79
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 85.1
PF1396450 Kelch_6: Kelch motif 82.98
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-64  Score=551.94  Aligned_cols=380  Identities=21%  Similarity=0.363  Sum_probs=346.3

Q ss_pred             CCCceeEEEEe--EEEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEecCCCcHHHHHHHhHhHhcCceecCCcchHHH
Q 008916          135 WSMDCSTVVRV--KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLD  212 (549)
Q Consensus       135 ~~~~~dv~l~~--~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~~~~~~~~~f~~lL~fiYtg~l~i~~~~~v~~  212 (549)
                      .+.+|||++.+  ++|+|||.||||+||||++||+++++|+.+++|+|+  ++++.+++.+|+|+||+++.++. +||++
T Consensus        33 ~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~--~v~~~~l~~ll~y~Yt~~i~i~~-~nVq~  109 (571)
T KOG4441|consen   33 EGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLE--GVDPETLELLLDYAYTGKLEISE-DNVQE  109 (571)
T ss_pred             hCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEe--cCCHHHHHHHHHHhhcceEEech-HhHHH
Confidence            44588888887  699999999999999999999999999999999999  89999999999999999999999 79999


Q ss_pred             HHHHHhhccccchHHHHHHHHHcCCCChhhHHHHHHhhhhcccccChHHHHHHHHHHHHhhhhhhhccchhhcCCCHHHH
Q 008916          213 VLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGV  292 (549)
Q Consensus       213 lL~aA~~l~l~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~s~~fl~L~~~~l  292 (549)
                      ||.+|++|||+.+++.|++||++ +++++||+.+..+|+.|    +|.+|.+.+..|+..||.++.+ +++|+.||.+++
T Consensus       110 ll~aA~~lQi~~v~~~C~~fL~~-~l~~~Nclgi~~~a~~~----~~~~L~~~a~~~i~~~F~~v~~-~eefl~L~~~~l  183 (571)
T KOG4441|consen  110 LLEAASLLQIPEVVDACCEFLES-QLDPSNCLGIRRFAELH----SCTELLEVADEYILQHFAEVSK-TEEFLLLSLEEL  183 (571)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhc----CcHHHHHHHHHHHHHHHHHHhc-cHHhhCCCHHHH
Confidence            99999999999999999999999 99999999999999999    9999999999999999999999 999999999999


Q ss_pred             hcccccCccccCChHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccCCCCCCHHHHHhhcccCCCC--ChhHHHHHHHH
Q 008916          293 EAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFD--HDVASKLVLEA  370 (549)
Q Consensus       293 ~~LL~sd~L~v~sE~~V~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~~ls~~~L~~~~~~~~l~--~~~~~~ll~ea  370 (549)
                      ..||++|+|+|.+|.+||+++++|++||   .++|+.++ +.|+++||||+|++.+|.+.+...++.  ++.|..++.+|
T Consensus       184 ~~ll~~d~l~v~~E~~vf~a~~~Wv~~d---~~~R~~~~-~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea  259 (571)
T KOG4441|consen  184 IGLLSSDDLNVDSEEEVFEAAMRWVKHD---FEEREEHL-PALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEA  259 (571)
T ss_pred             HhhccccCCCcCCHHHHHHHHHHHHhcC---HhhHHHHH-HHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHH
Confidence            9999999999999999999999999998   77889999 899999999999999999998887765  68999999999


Q ss_pred             HHhhhcCCcccccccccccccccc-ccccceeeecc-------CceeeeecCcCCeeee---cccccccceeeecCCcee
Q 008916          371 LFFKAEAPHRQRTLAAEESVTLNR-RFVERAYKYRP-------VKVVEFERPRQQCVVY---LDLKREECENLFPSGRVY  439 (549)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~t~~~~r-~~~~~~~~~~~-------~~~v~~~~p~~~~w~~---l~~~r~~~~~~~~~g~iY  439 (549)
                      ++||.. +.+++.+++++++|  | ...+.+++.++       ...+++|||..+.|..   |+.+|..+++++++|+||
T Consensus       260 ~~~~~~-~~~~~~~~~~~t~~--r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lY  336 (571)
T KOG4441|consen  260 KKYHLL-PQRRPVMQSPRTRP--RRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLY  336 (571)
T ss_pred             HHHhhC-cccCccccCCCccc--CcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEE
Confidence            999986 55667788999998  6 56677887554       3679999999999998   888999999999999999


Q ss_pred             eeeeeecCccc--cccc--cc-------c-----ccCCCcceEEEEEeCeec-------CCcceeeeccccceeecC---
Q 008916          440 SQAFHLGGQGF--FLSA--HC-------N-----MDQQSSFHCFGLFLGMQE-------KGSVSFAVDYEFAARSKP---  493 (549)
Q Consensus       440 ~~~~v~GG~g~--~~~~--~~-------~-----m~~~r~~~~~~~~~g~i~-------~g~l~~tV~~~~~E~ydp---  493 (549)
                          ++||+..  ....  .+       |     |+++|+.+++++++|+|+       ...+. +|     |||||   
T Consensus       337 ----v~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~-sv-----E~YDp~~~  406 (571)
T KOG4441|consen  337 ----VVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLN-SV-----ECYDPVTN  406 (571)
T ss_pred             ----EEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccc-cE-----EEecCCCC
Confidence                9999852  2221  12       3     999999999999999993       23455 48     99999   


Q ss_pred             CcceecCCCce------------EEEEcCccCCC---CceEEc-c----Ccee-------------eeCCeeEEEcCccc
Q 008916          494 TEEFVSKYKGN------------YTFTGGKAVGY---RNLFAI-P----WTSF-------------MADDSLYFINGILH  540 (549)
Q Consensus       494 ~W~~v~~l~~~------------iyv~GG~~~~~---~~v~~y-p----W~~~-------------~~~~~iyviGG~~~  540 (549)
                      +|+.++||+.+            ||++||.++..   ++|+|| |    |+.+             +++|+||++||...
T Consensus       407 ~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~  486 (571)
T KOG4441|consen  407 KWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG  486 (571)
T ss_pred             cccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccC
Confidence            99999999986            99999988766   889999 8    9987             99999999999866

>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>PF13854 Kelch_5: Kelch motif Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query549
4ap2_A297 Crystal Structure Of The Human Klhl11-cul3 Complex 2e-05
3hqi_A312 Structures Of Spop-Substrate Complexes: Insights In 4e-05
4eoz_A145 Crystal Structure Of The Spop Btb Domain Complexed 7e-05
3i3n_A279 Crystal Structure Of The Btb-Back Domains Of Human 2e-04
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 297 Back     alignment and structure 
Iteration: 1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 17/224 (7%)
Query: 154 ILAAKSPFFYKLFSNGMKESEQRHVALRINASEEA----ALMELLNFMYSNTLSTTAAPA 209
           +LAA + +F  L S    ES    V +R  +SE       +  ++ +MY+  +  +   +
Sbjct: 71  VLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTG-S 129
Query: 210 LLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQY 269
           + +VL  AD+F +     +C   L+          ++  L     + +      D  R+ 
Sbjct: 130 VHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIH-SLAHMYTLSQLALKAADMIRRN 188
Query: 270 LASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERRE 329
                +D     +E   LP   +   LS  ++ + SE+ +++ VLKW +    R  E RE
Sbjct: 189 FHKVIQD-----EEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQ----RNAEERE 239
Query: 330 VLGSRLARFIRFPHMTCRKLKKVLTCNDF--DHDVASKLVLEAL 371
                L + +R   M    L + +       +++V  KLV +A+
Sbjct: 240 RYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAV 283
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312 Back     alignment and structure
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 145 Back     alignment and structure
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11 Length = 279 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query549
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 2e-27
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 6e-24
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 4e-12
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 6e-12
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 6e-12
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 2e-11
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 1e-10
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
2vpk_A116 Myoneurin; transcription regulation, transcription 7e-10
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 2e-09
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 2e-09
3b84_A119 Zinc finger and BTB domain-containing protein 48; 4e-09
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 5e-09
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 6e-09
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 1e-08
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 2e-08
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 3e-08
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 3e-07
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 4e-07
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 6e-06
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 1e-04
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
 Score =  110 bits (277), Expect = 2e-27
 Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 21/226 (9%)

Query: 154 ILAAKSPFFYKLFSNGMKESEQRHVALRINASEE----AALMELLNFMYSNTLSTTAAPA 209
           +LAA + +F  L S    ES    V +R  +SE       +  ++ +MY+  +  +    
Sbjct: 53  VLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSV 112

Query: 210 LLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEA--VQPLTDAAR 267
             +VL  AD+F +     +C   L+   +   + +    L           +  L   A 
Sbjct: 113 H-EVLELADRFLLIRLKEFCGEFLKKK-LHLSNCVAIHSL------AHMYTLSQLALKAA 164

Query: 268 QYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEER 327
             +   +  + +  +E   LP   +   LS  ++ + SE+ +++ VLKW +      EER
Sbjct: 165 DMIRRNFHKVIQ-DEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRN---AEER 220

Query: 328 REVLGSRLARFIRFPHMTCRKLKKVLTCNDF--DHDVASKLVLEAL 371
                  L + +R   M    L + +       +++V  KLV +A+
Sbjct: 221 ERYF-EELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAV 265
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query549
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 100.0
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 100.0
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.94
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.94
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.89
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.84
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.84
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.83
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.83
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.82
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.82
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.81
2vpk_A116 Myoneurin; transcription regulation, transcription 99.81
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.8
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.79
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.79
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.77
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.77
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.77
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 99.72
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.69
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.47
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.47
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.43
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.39
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.38
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.38
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.38
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.38
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.37
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.35
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.34
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.3
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.3
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 99.23
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.15
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.12
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.06
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 98.88
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.87
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.79
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.63
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.53
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.21
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.14
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.11
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.03
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.51
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 96.78
3kvt_A115 Potassium channel protein SHAW; tetramerization do 94.93
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 94.2
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 93.32
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 93.06
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 91.3
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
Probab=100.00  E-value=1.6e-43  Score=356.30  Aligned_cols=242  Identities=20%  Similarity=0.363  Sum_probs=213.4

Q ss_pred             hHhhhccCCCCCceeEEEE---eEEEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEec----CCCcHHHHHHHhHhHh
Q 008916          126 EAANGNESSWSMDCSTVVR---VKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRI----NASEEAALMELLNFMY  198 (549)
Q Consensus       126 ~~~~~~~~~~~~~~dv~l~---~~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~~----~~~~~~~f~~lL~fiY  198 (549)
                      .+..+..+....|+.+++.   +++|+|||+|||++|+||++||+++|+|+.+..|+|++    +++++++|+.+|+|+|
T Consensus        22 ~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Y  101 (279)
T 3i3n_A           22 RQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMY  101 (279)
T ss_dssp             HHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhC
Confidence            4555665555444444443   45899999999999999999999999999999999972    2789999999999999


Q ss_pred             cCceecCCcchHHHHHHHHhhccccchHHHHHHHHHcCCCChhhHHHHHHhhhhcccccChHHHHHHHHHHHHhhhhhhh
Q 008916          199 SNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMT  278 (549)
Q Consensus       199 tg~l~i~~~~~v~~lL~aA~~l~l~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~  278 (549)
                      ||++.++. +++.+|+.+|++|+++.|++.|+++|.+ .++++||+.++.+|..|    ++..|.+.|.+||.+||.++.
T Consensus       102 tg~~~i~~-~~v~~ll~~A~~l~i~~L~~~c~~~L~~-~l~~~n~~~i~~~A~~~----~~~~L~~~~~~~i~~~f~~v~  175 (279)
T 3i3n_A          102 TGRIRVST-GSVHEVLELADRFLLIRLKEFCGEFLKK-KLHLSNCVAIHSLAHMY----TLSQLALKAADMIRRNFHKVI  175 (279)
T ss_dssp             HSEEEEET-TTHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCTTTHHHHHHHHHHT----TCHHHHHHHHHHHHHTHHHHT
T ss_pred             cCCcccCH-HHHHHHHHHHHHHCcHHHHHHHHHHHHH-cCCcchHHHHHHHHHHc----CcHHHHHHHHHHHHHHHHHHh
Confidence            99999998 7999999999999999999999999999 89999999999999999    899999999999999999999


Q ss_pred             ccchhhcCCCHHHHhcccccCccccCChHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccCCCCCCHHHHHhhcccCCC
Q 008916          279 KFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDF  358 (549)
Q Consensus       279 ~~s~~fl~L~~~~l~~LL~sd~L~v~sE~~V~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~~ls~~~L~~~~~~~~l  358 (549)
                      . +++|++||.+.+..||++|+|+|.+|.+||+++++|++|+   +++|.+++ .+||++||||+|++.+|.+.+..+++
T Consensus       176 ~-~~~f~~L~~~~l~~lL~~d~L~v~sE~~vf~av~~W~~~~---~~~r~~~~-~~ll~~VRf~l~~~~~L~~~v~~~~l  250 (279)
T 3i3n_A          176 Q-DEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRN---AEERERYF-EELFKLLRLSQMKPTYLTRHVKPERL  250 (279)
T ss_dssp             T-SSGGGGSCHHHHHHHHTCSSCCCSCHHHHHHHHHHHHHTT---HHHHTTTH-HHHHTTSCGGGSCHHHHHHTTTTSHH
T ss_pred             c-CcChhcCCHHHHHHHhcCcCCCCCCHHHHHHHHHHHHHcC---HHHHHHHH-HHHHHhcCCCCCCHHHHHHHhhccch
Confidence            9 9999999999999999999999999999999999999998   88899988 89999999999999999999888776


Q ss_pred             C--ChhHHHHHHHHHHhhhcCC
Q 008916          359 D--HDVASKLVLEALFFKAEAP  378 (549)
Q Consensus       359 ~--~~~~~~ll~ea~~~~~~~~  378 (549)
                      .  ++.|.+++.+|++||..+.
T Consensus       251 ~~~~~~c~~~l~ea~~~~~~~~  272 (279)
T 3i3n_A          251 VANNEVCVKLVADAVERHALRA  272 (279)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHTT
T ss_pred             hcCCHHHHHHHHHHHHhccCch
Confidence            5  6889999999999999754
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 549
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 1e-06
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 7e-06
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 138 DCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFM 197
           D   VV  +       +L A S  FY +F++ +K +                   LL+FM
Sbjct: 27  DVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVIN--LDPEINPEGFNILLDFM 84

Query: 198 YSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLR 234
           Y++ L+       + V+  A   ++   +  C + ++
Sbjct: 85  YTSRLNLREGNI-MAVMATAMYLQMEHVVDTCRKFIK 120
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query549
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.82
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.8
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 99.12
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.93
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 98.27
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.92
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.07
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.0
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.6
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.33
d1t1da_100 Shaker potassium channel {California sea hare (Apl 94.98
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 89.13
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 86.11
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.4e-21  Score=165.57  Aligned_cols=104  Identities=17%  Similarity=0.297  Sum_probs=91.1

Q ss_pred             HhhhccCCCCCceeEEEEe--EEEEchHHHhcccCHHHHHhhcCCCCCCCcceEEEecCCCcHHHHHHHhHhHhcCceec
Q 008916          127 AANGNESSWSMDCSTVVRV--KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLST  204 (549)
Q Consensus       127 ~~~~~~~~~~~~~dv~l~~--~~f~aHr~iLaa~S~yF~~mf~~~~~Es~~~~I~L~~~~~~~~~f~~lL~fiYtg~l~i  204 (549)
                      +..+++...  +||+++.+  ++|+|||+|||++|+||++||.+++.|+.+..+.++  ++++++|+.+|+|+|||++.+
T Consensus        16 l~~l~~~~~--~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~--~v~~~~f~~ll~~~Ytg~~~i   91 (122)
T d1r29a_          16 LNRLRSRDI--LTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDP--EINPEGFNILLDFMYTSRLNL   91 (122)
T ss_dssp             HHHHHHTTC--SCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCT--TSCHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHhcCC--CeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeec--ccCHHHHHHHHhhhcCCeecC
Confidence            344555555  55666555  799999999999999999999999998877666665  899999999999999999999


Q ss_pred             CCcchHHHHHHHHhhccccchHHHHHHHHHc
Q 008916          205 TAAPALLDVLMAADKFEVASCMRYCSRLLRN  235 (549)
Q Consensus       205 ~~~~~v~~lL~aA~~l~l~~L~~~C~~~L~~  235 (549)
                      +. +++.+++.+|++|+++.|++.|.+||++
T Consensus        92 ~~-~~v~~ll~~A~~l~i~~L~~~C~~~L~~  121 (122)
T d1r29a_          92 RE-GNIMAVMATAMYLQMEHVVDTCRKFIKA  121 (122)
T ss_dssp             CT-TTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             ch-hhHHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence            98 7999999999999999999999999986
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure