Citrus Sinensis ID: 008925
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 548 | 2.2.26 [Sep-21-2011] | |||||||
| Q8S9D1 | 831 | Pentatricopeptide repeat- | yes | no | 0.786 | 0.518 | 0.674 | 0.0 | |
| Q8GZ63 | 574 | Pentatricopeptide repeat- | no | no | 0.932 | 0.890 | 0.504 | 1e-155 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.779 | 0.576 | 0.290 | 7e-58 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.751 | 0.655 | 0.297 | 1e-56 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.766 | 0.530 | 0.266 | 1e-55 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.793 | 0.475 | 0.283 | 1e-55 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.755 | 0.652 | 0.296 | 4e-55 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.755 | 0.655 | 0.284 | 8e-55 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.757 | 0.555 | 0.294 | 1e-54 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.755 | 0.740 | 0.291 | 3e-54 |
| >sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 292/433 (67%), Positives = 367/433 (84%), Gaps = 2/433 (0%)
Query: 1 MNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGM 60
MN L+ +G+P EAH IFN LIEEGH+P+LITYTTLV ALTRQK F S+LSLISKVEK+G+
Sbjct: 326 MNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGL 385
Query: 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK 120
KPD+ILFNA+INA SESGN+D+AMKIF+KMK+SGCKPT ST+NTLIKGYG +GK EES +
Sbjct: 386 KPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSR 445
Query: 121 LLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAY 180
LL +M +D+ ++PNDRT NILV+AWC++ IEEAWN+VYKM + G++PD VT+NTLA+AY
Sbjct: 446 LLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAY 505
Query: 181 AQYGETYRAEQMLF-EMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPN 239
A+ G T AE M+ M +N+V+PN RTCG IV+GYC+EG ME+A+RF YRMKEL VHPN
Sbjct: 506 ARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPN 565
Query: 240 LVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFD 299
L VFNSLIKGFL+I D DGV + + LMEEFGVKPDVVTFST+M+AWSS G M +C+EI+
Sbjct: 566 LFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYT 625
Query: 300 DMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAV 359
DM++ GI+PDIH FSILAKGY RAGEP+KAE IL MRK+GV PNVV++T +ISGWC+A
Sbjct: 626 DMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAG 685
Query: 360 KMQRAMSIYEKMCEI-GINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTI 418
+M++AM +Y+KMC I G++PNL TYETL+WG+GEAKQPW+AEELL+ ME K V P + T+
Sbjct: 686 EMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTM 745
Query: 419 QLVADSWRAIGLA 431
QL+AD W++IG++
Sbjct: 746 QLIADGWKSIGVS 758
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 548 bits (1413), Expect = e-155, Method: Compositional matrix adjust.
Identities = 276/547 (50%), Positives = 380/547 (69%), Gaps = 36/547 (6%)
Query: 1 MNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGM 60
MN+L+ +G+PHEA +F L E GHRP+LI+YTTL+AA+T QK++ SI S++S+VE+ G
Sbjct: 52 MNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGT 111
Query: 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK 120
K DSI FNA+INA SESGN+++A++ KMK+ G PTTSTYNTLIKGYG GKPE S +
Sbjct: 112 KLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSE 171
Query: 121 LLQLMSQDKNVK--PNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLAR 178
LL LM ++ NV PN RT+N+LV+AWC K +EEAW VV KM G++PD VTYNT+A
Sbjct: 172 LLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIAT 231
Query: 179 AYAQYGETYRAEQMLFE--MQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEV 236
Y Q GET RAE + E + + +PN RTCGI+V GYC+EG + D +RF+ RMKE+ V
Sbjct: 232 CYVQKGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRV 291
Query: 237 HPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQE 296
NLVVFNSLI GF+++ D DG+D+ LTLM+E VK DV+T+ST+M+AWSSAG M K +
Sbjct: 292 EANLVVFNSLINGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQ 351
Query: 297 IFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWC 356
+F +MVKAG++PD H +SILAKGYVRA EP+KAE +L ++ PNVV+FTTVISGWC
Sbjct: 352 VFKEMVKAGVKPDAHAYSILAKGYVRAKEPKKAEELLETLIVES-RPNVVIFTTVISGWC 410
Query: 357 NAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS 416
+ M AM ++ KMC+ G++PN+KT+ETL+WGY E KQPW+AEE+LQ+M GV+P+ S
Sbjct: 411 SNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPWKAEEVLQMMRGCGVKPENS 470
Query: 417 TIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIA-VESIHRKQNLSASNSTFLQ 475
T L+A++WR GL E+ + + ++ K EIA +E +++KQ+ S S+ LQ
Sbjct: 471 TFLLLAEAWRVAGLTDESNKAI-------NALKCKDIEIAKLEKLYQKQS-SGSSFNLLQ 522
Query: 476 IPGVVSSEHNGSSAAKIRSQIVLRSDTVWTATKSLFVNTYGSGVQPMVVCRKQC-SQVGT 534
IP + + TA K++ ++ G + ++C+KQ +Q G
Sbjct: 523 IP--------------------VGKRELPTA-KAMNLSACKLGARVPIICQKQSQAQFGI 561
Query: 535 CGQFVNA 541
GQFV++
Sbjct: 562 SGQFVHS 568
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 225 bits (574), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 126/434 (29%), Positives = 223/434 (51%), Gaps = 7/434 (1%)
Query: 8 GKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILF 67
G+ EAH++ + +G+ P +I+Y+T+V R + LI +++ G+KP+S ++
Sbjct: 260 GRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIY 319
Query: 68 NAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQ 127
++I + EA + F +M G P T Y TLI G+ G + K M
Sbjct: 320 GSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEM-H 378
Query: 128 DKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETY 187
+++ P+ TY ++ +C + EA + ++M G++PD+VT+ L Y + G
Sbjct: 379 SRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMK 438
Query: 188 RAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLI 247
A ++ M PN T ++ G CKEG+++ A L+ M ++ + PN+ +NS++
Sbjct: 439 DAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIV 498
Query: 248 KGFLDIKDSDGVDKALTLMEEF---GVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKA 304
G + S +++A+ L+ EF G+ D VT++T+MDA+ +G M K QEI +M+
Sbjct: 499 NG---LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK 555
Query: 305 GIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRA 364
G++P I F++L G+ G + E +L M G+ PN F +++ +C ++ A
Sbjct: 556 GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAA 615
Query: 365 MSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADS 424
+IY+ MC G+ P+ KTYE L+ G+ +A+ A L Q M+ KG ST ++
Sbjct: 616 TAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKG 675
Query: 425 WRAIGLAREAKRVL 438
+ EA+ V
Sbjct: 676 FLKRKKFLEAREVF 689
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 221 bits (563), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/413 (29%), Positives = 216/413 (52%), Gaps = 1/413 (0%)
Query: 9 KPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFN 68
K EA + + ++ G +P L TY T+V L ++ LSL+ K+EK ++ D +++
Sbjct: 200 KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYT 259
Query: 69 AMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQD 128
+I+A NV++A+ +F +M + G +P TYN+LI+ N G+ ++ +LL M +
Sbjct: 260 TIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER 319
Query: 129 KNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYR 188
K + PN T++ L+ A+ + + EA + +M+ I PD TY++L + +
Sbjct: 320 K-INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 378
Query: 189 AEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIK 248
A+ M M + PN T ++ G+CK +E+ M M + + N V +N+LI+
Sbjct: 379 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 438
Query: 249 GFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEP 308
G D D K M GV PD++T+S ++D G + K +F+ + K+ +EP
Sbjct: 439 GLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP 498
Query: 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIY 368
DI+ ++I+ +G +AG+ + + S+ GV PNV+++TT+ISG+C + A +++
Sbjct: 499 DIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALF 558
Query: 369 EKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLV 421
+M E G PN TY TL+ + EL++ M G STI +V
Sbjct: 559 REMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMV 611
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/421 (26%), Positives = 237/421 (56%), Gaps = 1/421 (0%)
Query: 1 MNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGM 60
+N +G +A+ ++ +++ G P ++TY +++AAL + + + +++ + K+G+
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGV 262
Query: 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK 120
PD + +N++++ SG EA+ +KM+ G +P TY+ L+ G+ E+ K
Sbjct: 263 MPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARK 322
Query: 121 LLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAY 180
+ M++ + +KP TY L++ + +K ++ E ++ MV +GI PD ++ L AY
Sbjct: 323 IFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAY 381
Query: 181 AQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240
A+ G+ +A + +M+ + PN T G ++ CK G +EDAM + +M + + P
Sbjct: 382 AKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441
Query: 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDD 300
+V+NSLI G + ++ + M + G+ + + F++I+D+ G + + +++F+
Sbjct: 442 IVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFEL 501
Query: 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVK 360
MV+ G++P++ ++ L GY AG+ +A +L+ M G+ PN V ++T+I+G+C +
Sbjct: 502 MVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISR 561
Query: 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQL 420
M+ A+ ++++M G++P++ TY +L G + ++ A+EL + E G + + ST +
Sbjct: 562 MEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNI 621
Query: 421 V 421
+
Sbjct: 622 I 622
|
Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/437 (28%), Positives = 225/437 (51%), Gaps = 2/437 (0%)
Query: 8 GKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILF 67
G EA+ + ++E G P TYT+L+ ++K S + +++ G + + + +
Sbjct: 232 GNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAY 291
Query: 68 NAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQ 127
+I+ + +DEAM +F KMKD C PT TY LIK + E+L L++ M +
Sbjct: 292 THLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEM-E 350
Query: 128 DKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETY 187
+ +KPN TY +L+ + CS+ E+A ++ +M+ G+ P+ +TYN L Y + G
Sbjct: 351 ETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIE 410
Query: 188 RAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLI 247
A ++ M++ ++ PN RT ++ GYCK N+ AM L +M E +V P++V +NSLI
Sbjct: 411 DAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLI 469
Query: 248 KGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIE 307
G + D + L+LM + G+ PD T+++++D+ + + + ++FD + + G+
Sbjct: 470 DGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVN 529
Query: 308 PDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSI 367
P++ +++ L GY +AG+ +A +L M PN + F +I G C K++ A +
Sbjct: 530 PNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLL 589
Query: 368 YEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRA 427
EKM +IG+ P + T L+ + A Q M G +P T ++
Sbjct: 590 EEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCR 649
Query: 428 IGLAREAKRVLKSAEED 444
G +A+ ++ E+
Sbjct: 650 EGRLLDAEDMMAKMREN 666
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (550), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 123/415 (29%), Positives = 217/415 (52%), Gaps = 1/415 (0%)
Query: 9 KPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFN 68
K EA + + +++ G +P L+TY +V L ++ L+L++K+E ++ D ++FN
Sbjct: 205 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFN 264
Query: 69 AMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQD 128
+I++ + +VD+A+ +F++M+ G +P TY++LI + G+ ++ +LL M +
Sbjct: 265 TIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE- 323
Query: 129 KNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYR 188
K + PN T+N L+ A+ + EA + M+ I PD TYN+L + + +
Sbjct: 324 KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDK 383
Query: 189 AEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIK 248
A+QM M + P+ T ++ G+CK +ED M + + V + +LI+
Sbjct: 384 AKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 443
Query: 249 GFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEP 308
G D D K M GV PD++T+S ++D + G + K E+FD M K+ I+
Sbjct: 444 GLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 503
Query: 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIY 368
DI++++ + +G +AG+ + S+ GV PNVV + T+ISG C+ +Q A ++
Sbjct: 504 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALL 563
Query: 369 EKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVAD 423
+KM E G PN TY TL+ + + EL++ M STI LVA+
Sbjct: 564 KKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVAN 618
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 215 bits (547), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 118/415 (28%), Positives = 216/415 (52%), Gaps = 1/415 (0%)
Query: 9 KPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFN 68
K EA + + +++ G +P L+TY T+V L ++ LSL+ K+EK ++ D +++N
Sbjct: 203 KASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYN 262
Query: 69 AMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQD 128
+I+ + ++D+A+ +F +M + G +P TY++LI N G+ ++ +LL M +
Sbjct: 263 TIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIER 322
Query: 129 KNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYR 188
K + PN T++ L+ A+ + + EA + +M+ I PD TY++L + +
Sbjct: 323 K-INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 381
Query: 189 AEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIK 248
A+ M M + PN T ++ G+CK +E+ M M + + N V + +LI
Sbjct: 382 AKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIH 441
Query: 249 GFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEP 308
GF +D D M GV P+++T++ ++D G + K +F+ + ++ +EP
Sbjct: 442 GFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEP 501
Query: 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIY 368
DI+ ++I+ +G +AG+ + + ++ GV PNV+ + T+ISG+C + A S+
Sbjct: 502 DIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLL 561
Query: 369 EKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVAD 423
+KM E G PN TY TL+ + EL++ M G STI LV +
Sbjct: 562 KKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTN 616
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (546), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 123/417 (29%), Positives = 216/417 (51%), Gaps = 2/417 (0%)
Query: 23 EGHRPTLITYTTLVAALTRQKRFKSIL-SLISKVEKDGMKPDSILFNAMINACSESGNVD 81
G P +++Y ++ A R KR S ++ ++ + + P+ +N +I +GN+D
Sbjct: 163 HGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNID 222
Query: 82 EAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNIL 141
A+ +F KM+ GC P TYNTLI GY + K ++ KLL+ M+ K ++PN +YN++
Sbjct: 223 VALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMAL-KGLEPNLISYNVV 281
Query: 142 VRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQV 201
+ C + ++E V+ +M G D VTYNTL + Y + G ++A M EM + +
Sbjct: 282 INGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGL 341
Query: 202 RPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDK 261
P+ T ++ CK GNM AM FL +M+ + PN + +L+ GF + +
Sbjct: 342 TPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYR 401
Query: 262 ALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYV 321
L M + G P VVT++ +++ G M + +DM + G+ PD+ +S + G+
Sbjct: 402 VLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFC 461
Query: 322 RAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLK 381
R+ + +A + M + G+ P+ + ++++I G+C + + A +YE+M +G+ P+
Sbjct: 462 RSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEF 521
Query: 382 TYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVL 438
TY L+ Y +A +L M EKGV P T ++ + REAKR+L
Sbjct: 522 TYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLL 578
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 213 bits (542), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/415 (29%), Positives = 216/415 (52%), Gaps = 1/415 (0%)
Query: 9 KPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFN 68
K EA + + +++ G +P L+TY +V L ++ +L++K+E ++ D ++FN
Sbjct: 130 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFN 189
Query: 69 AMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQD 128
+I++ + +VD+A+ +F++M+ G +P TY++LI + G+ ++ +LL M +
Sbjct: 190 TIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE- 248
Query: 129 KNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYR 188
K + PN T+N L+ A+ + EA + M+ I PD TYN+L + + +
Sbjct: 249 KKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDK 308
Query: 189 AEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIK 248
A+QM M + P+ T ++ G+CK +ED M + + V + +LI+
Sbjct: 309 AKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 368
Query: 249 GFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEP 308
G D D K M GV PD++T+S ++D + G + K E+FD M K+ I+
Sbjct: 369 GLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 428
Query: 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIY 368
DI++++ + +G +AG+ + S+ GV PNVV + T+ISG C+ +Q A ++
Sbjct: 429 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALL 488
Query: 369 EKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVAD 423
+KM E G P+ TY TL+ + + EL++ M STI LVA+
Sbjct: 489 KKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVAN 543
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 548 | ||||||
| 225445222 | 636 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.860 | 0.716 | 0.0 | |
| 255546465 | 608 | pentatricopeptide repeat-containing prot | 0.981 | 0.884 | 0.702 | 0.0 | |
| 356527777 | 583 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.936 | 0.680 | 0.0 | |
| 356513139 | 621 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.879 | 0.678 | 0.0 | |
| 224142151 | 453 | predicted protein [Populus trichocarpa] | 0.791 | 0.958 | 0.783 | 0.0 | |
| 147812173 | 635 | hypothetical protein VITISV_033966 [Viti | 1.0 | 0.862 | 0.610 | 0.0 | |
| 225430029 | 635 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.862 | 0.608 | 0.0 | |
| 449467169 | 609 | PREDICTED: pentatricopeptide repeat-cont | 0.945 | 0.850 | 0.627 | 0.0 | |
| 224143015 | 552 | predicted protein [Populus trichocarpa] | 0.956 | 0.949 | 0.608 | 0.0 | |
| 296081889 | 608 | unnamed protein product [Vitis vinifera] | 0.959 | 0.865 | 0.599 | 0.0 |
| >gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222 [Vitis vinifera] gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/558 (71%), Positives = 467/558 (83%), Gaps = 11/558 (1%)
Query: 1 MNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGM 60
MNIL+ KGKP EA IFN L EEGHRPTLITYTTL+AALTRQKRFKSI SLISK+EK+G+
Sbjct: 78 MNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGL 137
Query: 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK 120
KPDS+ FNAMINA SESGNV EAMKIF+KMKD GCKPTTST+NTLIKGYGN G PEE LK
Sbjct: 138 KPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLK 197
Query: 121 LLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAY 180
LL LMSQ++NVKPNDRT+N L+RAWC+K I EAWNVVYKM ASG+QPD VTYNTLARAY
Sbjct: 198 LLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARAY 257
Query: 181 AQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240
AQ GET RAE M+ EMQNN+V PNERTCGII++GYCKEG M+DA+RFLYRM+ VHPNL
Sbjct: 258 AQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNL 317
Query: 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDD 300
V+FNSLIKGFLDI D+DGVD+ALTLMEEFGVKPDVVTFSTIM+AWSS GLM KCQEIFDD
Sbjct: 318 VIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDD 377
Query: 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVK 360
MVKAGIEPDIH FSILAKGYVRAGEP+KAES+LT+M K GV PNVV+FTT+ISGWC+A K
Sbjct: 378 MVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISGWCSAGK 437
Query: 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQL 420
M+ A +YEKMCE+GI PNLKT+ETL+WGYGEAK+P +AEELLQ+ME+KGV P KSTIQL
Sbjct: 438 MEYASRVYEKMCEMGICPNLKTFETLIWGYGEAKEPQKAEELLQIMEQKGVAPVKSTIQL 497
Query: 421 VADSWRAIGLAREAKRVLKSAEEDRQSM-PNKKDEIAVESIHR---KQNLSASNSTFLQI 476
VAD+W A+GLA EAKR+ EE + M K+D++A ES+ R KQNL AS S +Q+
Sbjct: 498 VADAWHALGLANEAKRIKNDVEEAPKVMISTKEDDVAAESLERIYQKQNLKASYSDIVQV 557
Query: 477 PGVVSSEHNGSSAAKIRSQIVLRS-----DTVWTATKSLFV-NTYGSGVQPMVVCRKQC- 529
PG+V ++ NGS+AA IRS+++++ + +WTATKS+F+ G V+P +CR Q
Sbjct: 558 PGIVMTDQNGSTAANIRSRMIMKGPGSPPENLWTATKSMFLAQASGFRVRPSFICRTQFQ 617
Query: 530 SQVGTCGQFVNAYRLVFI 547
QVG CGQ VN+ RLVF+
Sbjct: 618 GQVGVCGQCVNSCRLVFL 635
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/554 (70%), Positives = 457/554 (82%), Gaps = 16/554 (2%)
Query: 1 MNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGM 60
MNIL+GKGKPHEA+ IF+ L+E+GHRPTLITYTTLVAALT+ K F+SI LISKVE++GM
Sbjct: 65 MNILIGKGKPHEANLIFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLISKVEENGM 124
Query: 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK 120
KPDSIL+NAMINA SESGNV EAMKIFQKMKD+GCKPTTST+NTLIKGYGN GKPEE LK
Sbjct: 125 KPDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLK 184
Query: 121 LLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAY 180
+L LMS D +VKPNDRTYNILVRAWCSK +IEEAWNV++KMVASGIQPD VTYN LARAY
Sbjct: 185 MLHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAY 244
Query: 181 AQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240
AQ GET RAE ++ EMQ +V PNERTCGIIV+GYCKEGNM +A+RF+YRMKEL VHPNL
Sbjct: 245 AQKGETLRAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNL 304
Query: 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDD 300
V+FNSLIKGFLDI D+DGVD+ALTLMEE+GVKPDV+TFSTIM+AWSSAGLM KCQEIF+D
Sbjct: 305 VIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFND 364
Query: 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVK 360
M KAGIEPDIH FSILAKGYVRAGE + AES+LTSM K GV PNVV+ TT+ISGWC+A K
Sbjct: 365 MAKAGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGK 424
Query: 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQL 420
M+ A +YEKMCEIGI+PNLKT+ETL+WGY EA+QP +AEELLQ+MEEKGV P+KSTIQL
Sbjct: 425 MENAKMVYEKMCEIGISPNLKTFETLIWGYAEARQPGKAEELLQLMEEKGVFPEKSTIQL 484
Query: 421 VADSWRAIGLAREAKRVLKSAEEDRQSMPN-KKDEIAVES---IHRKQNLSASNSTFLQI 476
VAD+WR IGL EAKR+ K EED + + K+ EI VES I+R QN SAS LQI
Sbjct: 485 VADAWRNIGLLCEAKRITKIEEEDEELYADCKRGEIPVESLERIYRDQNGSASYLKTLQI 544
Query: 477 PGVVSSEHNGS-SAAKIRSQIVLRSDTVWTATKSLFVNTYGSGVQPMVVCRKQCSQ-VGT 534
G V ++ NGS SA IRSQ+VLR + ++ + QP+++CR+ C V
Sbjct: 545 SGEVMTKQNGSTSAVNIRSQLVLRR----------YRSSCQNRKQPLIICRQHCRHCVRM 594
Query: 535 CGQFVNAYRLVFIN 548
CG+ +N+ ++ I+
Sbjct: 595 CGKLINSCGMIAIS 608
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/554 (68%), Positives = 454/554 (81%), Gaps = 8/554 (1%)
Query: 1 MNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGM 60
MN L+GKGKPHEA +FN L EEGH+PTLITYTTLVAALTRQKRFKSI +L+SKV +GM
Sbjct: 29 MNTLIGKGKPHEAQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGM 88
Query: 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK 120
KPDSIL NAMINA SESG VDEAMKIFQKMK+ GCKPTTSTYNTLIKG+G G+P ES+K
Sbjct: 89 KPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMK 148
Query: 121 LLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAY 180
LL++M QD+NVKPNDRTYNIL++AWC+K +EEAWNV++KMVASGIQPD VTYNT+ARAY
Sbjct: 149 LLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAY 208
Query: 181 AQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240
AQ GET RAE+++ +M N V+PNERTCGII+SGYCKEGNM +A+RFLYRMKEL V PN
Sbjct: 209 AQNGETERAERLILKMPYNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNP 268
Query: 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDD 300
VVFNSLIKG+LD D++GVD+ALTLMEEFG+KPDVVTFSTIM+AWSSAGLM C+EIF+D
Sbjct: 269 VVFNSLIKGYLDTTDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFND 328
Query: 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVK 360
MVKAGIEPDIH +SILAKGYVRAG+P+KAE++LTSM KYGV PNVV+FTT+ISGWC A K
Sbjct: 329 MVKAGIEPDIHAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGK 388
Query: 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQL 420
M RA + EKM E+G +PNLKTYETL+WGYGEAKQPW+AEELL MEE+GV P+ ST+QL
Sbjct: 389 MDRAFRLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEELLTTMEERGVVPEMSTMQL 448
Query: 421 VADSWRAIGLAREAKRVLKSAEE----DRQSMPNKKDEIAVESIHRKQNLSASNSTFLQI 476
VAD+WRAIGL +EA R+L +EE D++ +K ++ESI++KQ LSAS S LQI
Sbjct: 449 VADAWRAIGLFKEANRILNGSEEESELDQEFDSDKIQVQSLESIYKKQKLSASPSNLLQI 508
Query: 477 PGVVSSEHNGSSAAKIRSQIVLR-SDTVWTATKSL-FVNTYGS-GVQPMVVCRKQCSQVG 533
P VV + ++ IR ++V++ SD + T S+ FV T S GVQP++V R+Q Q
Sbjct: 509 PDVVVTHPTRTTNGNIRCRMVVKLSDNMRNVTTSMFFVRTRSSYGVQPLIVSRQQI-QNQ 567
Query: 534 TCGQFVNAYRLVFI 547
F++ R+V I
Sbjct: 568 VVRPFLDCCRVVSI 581
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/554 (67%), Positives = 457/554 (82%), Gaps = 8/554 (1%)
Query: 1 MNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGM 60
MN L+GKGKPHEA +F+ L EEGH+PTLITYTTLVAALTRQKRFKSI +L+SKV +GM
Sbjct: 67 MNALIGKGKPHEAQAVFHNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGM 126
Query: 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK 120
KPDSIL NAMINA S+SG VDEAMKIFQKMK+ GCKPTTSTYNTLIKG+G VG+P ES+K
Sbjct: 127 KPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMK 186
Query: 121 LLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAY 180
LL++M QD+NVKPNDRTYNIL++AWC+K +EEAWNV++KMVASGIQPD VTYNT+ARAY
Sbjct: 187 LLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAY 246
Query: 181 AQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240
AQ GET +AE+++ +MQ N+V+PNERTCGII+SGYCKEGNM +A+RFLYRMKEL VHPN
Sbjct: 247 AQNGETEKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNP 306
Query: 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDD 300
VVFNSLIKG+LD D++GVD+ALTLMEEFG+KPDVVTFSTIM+AWSSAGLM C+EIF+D
Sbjct: 307 VVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFND 366
Query: 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVK 360
MVKAGIEPDIH +SILAKGYVRAG+P+KAES+LTSM KYGV NVV+FTT+ISGWC A K
Sbjct: 367 MVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGK 426
Query: 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQL 420
M RA S+ EKM E+G +PNLKTYETL+WGYGEAKQPW+AEE+L MEE+GV P+ ST+QL
Sbjct: 427 MDRAFSLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEILSTMEERGVVPEMSTMQL 486
Query: 421 VADSWRAIGLAREAKRVLKSAEE----DRQSMPNKKDEIAVESIHRKQNLSASNSTFLQI 476
VAD+WRAIGL +EA R+L +EE D++ +K ++ESI++KQ LSAS S LQI
Sbjct: 487 VADAWRAIGLFKEANRILNGSEEESELDQEFDSDKMPVQSLESIYKKQKLSASPSNLLQI 546
Query: 477 PGVVSSEHNGSSAAKIRSQIVLR-SDTVWTATKSL-FVNTYGS-GVQPMVVCRKQCSQVG 533
VV + ++ IRS++V++ SD + T S+ FV T S GVQP++V +Q Q
Sbjct: 547 RDVVVAHPERTTNGNIRSRMVVKLSDNMRNVTTSMFFVRTRSSYGVQPLIVSSQQI-QNQ 605
Query: 534 TCGQFVNAYRLVFI 547
F++ R+V I
Sbjct: 606 VVRPFLDCCRVVSI 619
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa] gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/435 (78%), Positives = 391/435 (89%), Gaps = 1/435 (0%)
Query: 1 MNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGM 60
MN+L+GKGKP EAH IFN L++EGH+PTLITYTTLVAALTRQK FKSIL LISKVE++GM
Sbjct: 20 MNVLIGKGKPREAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEENGM 79
Query: 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK 120
KPDSILFN++INA SESGN+ EAMK+F+KMK+SGCKPTTST+NTLIKGYGN GK EE+LK
Sbjct: 80 KPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALK 139
Query: 121 LLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAY 180
LL+ + QD VKPN RTYNILVRAWC+K ++EEAWN+VYKMVASG+QPDAVTYNTLARAY
Sbjct: 140 LLEFL-QDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAY 198
Query: 181 AQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240
A+ GET RAE+M+ EM N +V PNERTC IIV+GYCKEGNM DA RF++RMKEL V PNL
Sbjct: 199 AEKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPNL 258
Query: 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDD 300
VFNSLIKGFLD D++GVD+ LTLMEE GV+PDVVTFSTIM+AWSSAG M KC+EIF+D
Sbjct: 259 FVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFND 318
Query: 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVK 360
MVKA IEPDIH FSILAKGYVRAGEP+KAESILTSMRKYGVHPNVV+ TTVISGWC+A K
Sbjct: 319 MVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKYGVHPNVVICTTVISGWCSAGK 378
Query: 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQL 420
M+ AM +YEKMCEIG++PNLKTYETL+WGYGEAKQP +AEELLQVMEEKGV PKK T+QL
Sbjct: 379 MEHAMKVYEKMCEIGVSPNLKTYETLIWGYGEAKQPLKAEELLQVMEEKGVFPKKGTMQL 438
Query: 421 VADSWRAIGLAREAK 435
+AD+WRAIGL E++
Sbjct: 439 IADAWRAIGLLSESE 453
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/557 (61%), Positives = 442/557 (79%), Gaps = 9/557 (1%)
Query: 1 MNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGM 60
MNI++ KG+P E I + +IE GH+P+L+TYTTL+AALT QK F SI S+IS+VE++GM
Sbjct: 79 MNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGM 138
Query: 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK 120
+PDSI FNA+INA SESGN+ EAMK F KMK+SG KPTTST+NTLIKGYG G+PEES K
Sbjct: 139 EPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQK 198
Query: 121 LLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAY 180
LLZLMSQD+NV+PN RTYN+LVRAWC+K +I +AWNVVYKMVASG+QPDAVTYNT+A AY
Sbjct: 199 LLZLMSQDENVRPNLRTYNVLVRAWCNKXNIMKAWNVVYKMVASGLQPDAVTYNTIATAY 258
Query: 181 AQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240
AQ GE +AE ++ EMQN+ V+PNERTC II+ GYCKEG +++A++F+YRMK+L + PNL
Sbjct: 259 AQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNL 318
Query: 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDD 300
VVFNSLIKGF+D D DGV++ LTLMEEFGVKPDV+TFSTIM+AWS+AG M KC+EIFDD
Sbjct: 319 VVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDD 378
Query: 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVK 360
MVKA I+PD HV+SILAKGYVRAGEP+KAE IL +M K G HPNVVMFTT+I+GWC+A +
Sbjct: 379 MVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVMFTTIINGWCSAGR 438
Query: 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQL 420
M+ A+ I+EKMCE GI PNLKT+ETL+WGYGEA+QPW++EE+LQ+MEE V+P+K+T+ L
Sbjct: 439 MEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLL 498
Query: 421 VADSWRAIGLAREAKRVLKSAE-EDRQSMPNKKDEIAVESIHRK-QNLSASNSTFLQIPG 478
VA++WRA GL +EA R+L + + E+ +++D+I V S + Q SAS LQ+P
Sbjct: 499 VAEAWRATGLKKEANRILSAVKNEETTHETDREDKIPVGSSEKHYQKPSASFPNQLQLPN 558
Query: 479 VVSSEHNGSSAAKIRSQIVLRS-----DTVWTATKSL-FVNTYGSGVQPMVVCRKQC-SQ 531
+V S+ GS +A RS++VL ++ WTAT+SL ++ G + ++C+KQ Q
Sbjct: 559 LVISDQKGSGSATKRSRMVLGDTDFSLESSWTATRSLSLTHSCTFGARSPIICQKQSHGQ 618
Query: 532 VGTCGQFVNAYRLVFIN 548
+ Q ++ LVF+N
Sbjct: 619 LCMYSQLAHSCPLVFLN 635
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein At5g25630-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/557 (60%), Positives = 443/557 (79%), Gaps = 9/557 (1%)
Query: 1 MNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGM 60
MNI++ KG+P E I + +IE GH+P+L+TYTTL+AALT QK F SI S+IS+VE++GM
Sbjct: 79 MNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGM 138
Query: 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK 120
+PDSI FNA+INA SESGN+ EAMK F KMK+SG KPTTST+NTLIKGYG G+PEES K
Sbjct: 139 EPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQK 198
Query: 121 LLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAY 180
LL+LMSQD+NV+PN RTYN+LVRAWC+K +I +AWNVVYKMVASG+QPDAVTYNT+A AY
Sbjct: 199 LLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAY 258
Query: 181 AQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240
AQ GE +AE ++ EMQN+ V+PNERTC II+ GYCKEG +++A++F+YRMK+L + PNL
Sbjct: 259 AQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNL 318
Query: 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDD 300
VVFNSLIKGF+D D DGV++ LTLMEEFGVKPDV+TFSTIM+AWS+AG M KC+EIFDD
Sbjct: 319 VVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDD 378
Query: 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVK 360
MVKA I+PD HV+SILAKGYVRAGEP+KAE IL +M K G HPNVV+FTT+I+GWC+A +
Sbjct: 379 MVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGR 438
Query: 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQL 420
M+ A+ I+EKMCE GI PNLKT+ETL+WGYGEA+QPW++EE+LQ+MEE V+P+K+T+ L
Sbjct: 439 MEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLL 498
Query: 421 VADSWRAIGLAREAKRVLKSAE-EDRQSMPNKKDEIAVESIHRK-QNLSASNSTFLQIPG 478
VA++WRA GL +EA R+L + + E+ +++D+I V S+ + Q SAS LQ+P
Sbjct: 499 VAEAWRATGLKKEANRILSAVKNEEMTHETDREDKIPVGSLEKHYQKPSASFPNQLQLPN 558
Query: 479 VVSSEHNGSSAAKIRSQIVLRS-----DTVWTATKSL-FVNTYGSGVQPMVVCRKQC-SQ 531
+V S+ GS +A RS++VL ++ WTAT+SL ++ G + ++C+KQ Q
Sbjct: 559 LVISDQKGSGSATKRSRMVLGDTDFSLESSWTATRSLSLTHSCTFGARSPIICQKQSHGQ 618
Query: 532 VGTCGQFVNAYRLVFIN 548
+ Q ++ LVF+N
Sbjct: 619 LCMYSQLAHSCPLVFLN 635
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Cucumis sativus] gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/534 (62%), Positives = 424/534 (79%), Gaps = 16/534 (2%)
Query: 1 MNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGM 60
MNILV +GKP EA +IFN L+E+GHRPT +TYT LVAALTRQKRFK+I L+S++E+ G+
Sbjct: 64 MNILVERGKPQEAQFIFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLLSEMEETGI 123
Query: 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK 120
KPDSIL NA+INA SESGNV EAM+IFQKM++SGCKPTTST+NTLIKGYG + KPEES+K
Sbjct: 124 KPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGYGIIRKPEESMK 183
Query: 121 LLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAY 180
LL+LM++ N+KPN+RTYNILV A C K SI+EAWNVV++M+ASG+QPD VTYNTLARAY
Sbjct: 184 LLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAY 243
Query: 181 AQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240
AQ GET +AE ++ +M N +V PNERTCGIIV GYC++GN+ +A+R +YRM++L +HPNL
Sbjct: 244 AQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNL 303
Query: 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDD 300
V+FNSLIKGFLDI DSDGVDKALT+MEE GVKPDV+TFSTIM+ WSSAG M KCQEIFDD
Sbjct: 304 VIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDD 363
Query: 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVK 360
M+K+GIEPDIHVFSILAKG+VRAGEP KAES+L M KYGV PNVV+FTT+ISGWC A K
Sbjct: 364 MLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGK 423
Query: 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQL 420
M++A ++E MC++ ++PNLKT+ETL+WGYGEAKQPWRAEE+LQ+MEE V P+ ST++L
Sbjct: 424 MEKAWKVFEHMCDMDVSPNLKTFETLIWGYGEAKQPWRAEEILQMMEEMNVVPENSTLKL 483
Query: 421 VADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVV 480
V+++WR+IG+ +AK + EE+ N E IH ++ AS S L+ V+
Sbjct: 484 VSEAWRSIGMVNDAK--AERTEENEIPWRNS------ERIHEEEGPHASYSNLLKSEIVI 535
Query: 481 SSEHNGSSAAKIRSQIVLRSDTV------WTATKSLFVNTYGSGVQPMVVCRKQ 528
S NGSS ++ RS+ + + V T+T L T S +P+++C Q
Sbjct: 536 VSNGNGSSYSQTRSRTLPKGVEVPSGRPRSTSTSMLLRQTRPS--RPLILCHIQ 587
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa] gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/557 (60%), Positives = 422/557 (75%), Gaps = 33/557 (5%)
Query: 1 MNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGM 60
MN LV KGKP EA IF LIE GH+P+LI+YTTL+AALT QKRF SI S+IS+VE++GM
Sbjct: 20 MNFLVEKGKPQEAESIFYSLIEGGHKPSLISYTTLLAALTMQKRFDSIYSIISQVEENGM 79
Query: 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK 120
PDSI FNA+INA SESGN++ AM+ F KM+++G KPTTSTYNTLIKGYG GKPEES+K
Sbjct: 80 NPDSIFFNAVINAFSESGNMESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEESVK 139
Query: 121 LLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAY 180
LL+LMSQ+ NVKPN RTYN+LVRAWC+K I EAWNVVYKM+ASGIQPD VTYNT+A AY
Sbjct: 140 LLELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYNTIATAY 199
Query: 181 AQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240
AQ G +AE ++ EMQNN V+PNERTCGII+SGYCKEG + +A+RF YRMKEL +HPNL
Sbjct: 200 AQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELGIHPNL 259
Query: 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDD 300
V+FNSLIKGF+ I D DGVD+ L LMEEFGVKPDV+TFSTIM+AWS+AG M KC+EIFDD
Sbjct: 260 VIFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDD 319
Query: 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVK 360
MVKAGIEPD H +SILAKGYVRA EP+KAE +LT+M K G PNVV+FTTVISGWC+A K
Sbjct: 320 MVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTMIKSGFQPNVVIFTTVISGWCSAGK 379
Query: 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQL 420
M A+ +++KMC+ GI+PNLKT+ETL+WG+ EA+QPW+AEE+LQ+M E V+P+KST+ L
Sbjct: 380 MDYAVRVFDKMCQRGISPNLKTFETLIWGFAEARQPWKAEEILQIMTEFEVQPEKSTMLL 439
Query: 421 VADSWRAIGLAREAKRVLKSAEEDRQSMPNKKD----EIAV---ESIHRKQNLSASNSTF 473
VA++WRA G+ +EA R+L + +R+ M N+K+ EI V E +++KQ S
Sbjct: 440 VAEAWRATGMTKEANRLLGT--RNRKEMTNRKEALEKEIPVGNLEKLYQKQTEGVLYSNI 497
Query: 474 LQIPGVVSSEHNGSSAAKIRSQIVLRSDTVWTATKSL-FVNTYGSGVQPMVVCRKQC-SQ 531
LQIP S W AT S+ ++ G++ ++CRKQ +Q
Sbjct: 498 LQIPSTCS----------------------WLATGSMSLSHSCKFGLRLPIICRKQSQAQ 535
Query: 532 VGTCGQFVNAYRLVFIN 548
G GQ + VF+N
Sbjct: 536 HGMYGQLAQSCTAVFLN 552
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/552 (59%), Positives = 429/552 (77%), Gaps = 26/552 (4%)
Query: 1 MNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGM 60
MNI++ KG+P E I + +IE GH+P+L+TYTTL+AALT QK F SI S+IS+VE++GM
Sbjct: 79 MNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGM 138
Query: 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK 120
+PDSI FNA+INA SESGN+ EAMK F KMK+SG KPTTST+NTLIKGYG G+PEES K
Sbjct: 139 EPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQK 198
Query: 121 LLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAY 180
LL+LMSQD+NV+PN RTYN+LVRAWC+K +I +AWNVVYKMVASG+QPDAVTYNT+A AY
Sbjct: 199 LLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAY 258
Query: 181 AQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240
AQ GE +AE ++ EMQN+ V+PNERTC II+ GYCKEG +++A++F+YRMK+L + PNL
Sbjct: 259 AQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNL 318
Query: 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDD 300
VVFNSLIKGF+D D DGV++ LTLMEEFGVKPDV+TFSTIM+AWS+AG M KC+EIFDD
Sbjct: 319 VVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDD 378
Query: 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVK 360
MVKA I+PD HV+SILAKGYVRAGEP+KAE IL +M K G HPNVV+FTT+I+GWC+A +
Sbjct: 379 MVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGR 438
Query: 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQL 420
M+ A+ I+EKMCE GI PNLKT+ETL+WGYGEA+QPW++EE+LQ+MEE V+P+K+T+ L
Sbjct: 439 MEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLL 498
Query: 421 VADSWRAIGLAREAKRVLKSAE-EDRQSMPNKKDEIAVESIHRK-QNLSASNSTFLQIPG 478
VA++WRA GL +EA R+L + + E+ +++D+I V S+ + Q SAS LQ+P
Sbjct: 499 VAEAWRATGLKKEANRILSAVKNEEMTHETDREDKIPVGSLEKHYQKPSASFPNQLQLPN 558
Query: 479 VVSSEHNGSSAAKIRSQIVLRSDTVWTATKSL-FVNTYGSGVQPMVVCRKQC-SQVGTCG 536
+ S WTAT+SL ++ G + ++C+KQ Q+
Sbjct: 559 LSS----------------------WTATRSLSLTHSCTFGARSPIICQKQSHGQLCMYS 596
Query: 537 QFVNAYRLVFIN 548
Q ++ LVF+N
Sbjct: 597 QLAHSCPLVFLN 608
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 548 | ||||||
| TAIR|locus:1005716169 | 831 | AT5G21222 [Arabidopsis thalian | 0.821 | 0.541 | 0.650 | 1.6e-164 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.751 | 0.655 | 0.297 | 1.1e-53 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.793 | 0.475 | 0.283 | 1.2e-52 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.755 | 0.554 | 0.298 | 3.5e-52 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.755 | 0.652 | 0.296 | 9.2e-52 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.808 | 0.721 | 0.256 | 2.8e-50 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.784 | 0.589 | 0.260 | 5.8e-50 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.760 | 0.697 | 0.292 | 9.5e-50 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.75 | 0.652 | 0.279 | 1.5e-49 | |
| TAIR|locus:2044430 | 822 | AT2G18940 [Arabidopsis thalian | 0.782 | 0.521 | 0.274 | 5.6e-49 |
| TAIR|locus:1005716169 AT5G21222 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1601 (568.6 bits), Expect = 1.6e-164, P = 1.6e-164
Identities = 296/455 (65%), Positives = 377/455 (82%)
Query: 1 MNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGM 60
MN L+ +G+P EAH IFN LIEEGH+P+LITYTTLV ALTRQK F S+LSLISKVEK+G+
Sbjct: 326 MNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGL 385
Query: 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK 120
KPD+ILFNA+INA SESGN+D+AMKIF+KMK+SGCKPT ST+NTLIKGYG +GK EES +
Sbjct: 386 KPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSR 445
Query: 121 LLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAY 180
LL +M +D+ ++PNDRT NILV+AWC++ IEEAWN+VYKM + G++PD VT+NTLA+AY
Sbjct: 446 LLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAY 505
Query: 181 AQYGETYRAEQMLF-EMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPN 239
A+ G T AE M+ M +N+V+PN RTCG IV+GYC+EG ME+A+RF YRMKEL VHPN
Sbjct: 506 ARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPN 565
Query: 240 LVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFD 299
L VFNSLIKGFL+I D DGV + + LMEEFGVKPDVVTFST+M+AWSS G M +C+EI+
Sbjct: 566 LFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYT 625
Query: 300 DMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAV 359
DM++ GI+PDIH FSILAKGY RAGEP+KAE IL MRK+GV PNVV++T +ISGWC+A
Sbjct: 626 DMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAG 685
Query: 360 KMQRAMSIYEKMCEI-GINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTI 418
+M++AM +Y+KMC I G++PNL TYETL+WG+GEAKQPW+AEELL+ ME K V P + T+
Sbjct: 686 EMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTM 745
Query: 419 QLVADSWRAIGLAR--EAKRVLKS-AEEDRQSMPN 450
QL+AD W++IG++ +A + S + + ++PN
Sbjct: 746 QLIADGWKSIGVSNSNDANTLGSSFSTSSKLNIPN 780
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 123/413 (29%), Positives = 216/413 (52%)
Query: 9 KPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFN 68
K EA + + ++ G +P L TY T+V L ++ LSL+ K+EK ++ D +++
Sbjct: 200 KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYT 259
Query: 69 AMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQD 128
+I+A NV++A+ +F +M + G +P TYN+LI+ N G+ ++ +LL M +
Sbjct: 260 TIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER 319
Query: 129 KNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYR 188
K + PN T++ L+ A+ + + EA + +M+ I PD TY++L + +
Sbjct: 320 K-INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 378
Query: 189 AEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIK 248
A+ M M + PN T ++ G+CK +E+ M M + + N V +N+LI+
Sbjct: 379 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 438
Query: 249 GFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEP 308
G D D K M GV PD++T+S ++D G + K +F+ + K+ +EP
Sbjct: 439 GLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP 498
Query: 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIY 368
DI+ ++I+ +G +AG+ + + S+ GV PNV+++TT+ISG+C + A +++
Sbjct: 499 DIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALF 558
Query: 369 EKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLV 421
+M E G PN TY TL+ + EL++ M G STI +V
Sbjct: 559 REMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMV 611
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 552 (199.4 bits), Expect = 1.2e-52, P = 1.2e-52
Identities = 124/437 (28%), Positives = 225/437 (51%)
Query: 8 GKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILF 67
G EA+ + ++E G P TYT+L+ ++K S + +++ G + + + +
Sbjct: 232 GNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAY 291
Query: 68 NAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQ 127
+I+ + +DEAM +F KMKD C PT TY LIK + E+L L++ M +
Sbjct: 292 THLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEM-E 350
Query: 128 DKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETY 187
+ +KPN TY +L+ + CS+ E+A ++ +M+ G+ P+ +TYN L Y + G
Sbjct: 351 ETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIE 410
Query: 188 RAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLI 247
A ++ M++ ++ PN RT ++ GYCK N+ AM L +M E +V P++V +NSLI
Sbjct: 411 DAVDVVELMESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERKVLPDVVTYNSLI 469
Query: 248 KGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIE 307
G + D + L+LM + G+ PD T+++++D+ + + + ++FD + + G+
Sbjct: 470 DGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVN 529
Query: 308 PDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSI 367
P++ +++ L GY +AG+ +A +L M PN + F +I G C K++ A +
Sbjct: 530 PNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLL 589
Query: 368 YEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRA 427
EKM +IG+ P + T L+ + A Q M G +P T ++
Sbjct: 590 EEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCR 649
Query: 428 IGLAREAKRVLKSAEED 444
G +A+ ++ E+
Sbjct: 650 EGRLLDAEDMMAKMREN 666
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 124/416 (29%), Positives = 215/416 (51%)
Query: 24 GHRPTLITYTTLVAALTRQKRFKSILSLISK-VEKDGMKPDSILFNAMINACSESGNVDE 82
G P +++Y ++ A R KR S + K + + + P+ +N +I +GN+D
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDV 223
Query: 83 AMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILV 142
A+ +F KM+ GC P TYNTLI GY + K ++ KLL+ M+ K ++PN +YN+++
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMAL-KGLEPNLISYNVVI 282
Query: 143 RAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR 202
C + ++E V+ +M G D VTYNTL + Y + G ++A M EM + +
Sbjct: 283 NGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLT 342
Query: 203 PNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKA 262
P+ T ++ CK GNM AM FL +M+ + PN + +L+ GF + +
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402
Query: 263 LTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR 322
L M + G P VVT++ +++ G M + +DM + G+ PD+ +S + G+ R
Sbjct: 403 LREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCR 462
Query: 323 AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKT 382
+ + +A + M + G+ P+ + ++++I G+C + + A +YE+M +G+ P+ T
Sbjct: 463 SYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFT 522
Query: 383 YETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVL 438
Y L+ Y +A +L M EKGV P T ++ + REAKR+L
Sbjct: 523 YTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLL 578
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 123/415 (29%), Positives = 217/415 (52%)
Query: 9 KPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFN 68
K EA + + +++ G +P L+TY +V L ++ L+L++K+E ++ D ++FN
Sbjct: 205 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFN 264
Query: 69 AMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQD 128
+I++ + +VD+A+ +F++M+ G +P TY++LI + G+ ++ +LL M +
Sbjct: 265 TIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE- 323
Query: 129 KNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYR 188
K + PN T+N L+ A+ + EA + M+ I PD TYN+L + + +
Sbjct: 324 KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDK 383
Query: 189 AEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIK 248
A+QM M + P+ T ++ G+CK +ED M + + V + +LI+
Sbjct: 384 AKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 443
Query: 249 GFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEP 308
G D D K M GV PD++T+S ++D + G + K E+FD M K+ I+
Sbjct: 444 GLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 503
Query: 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIY 368
DI++++ + +G +AG+ + S+ GV PNVV + T+ISG C+ +Q A ++
Sbjct: 504 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALL 563
Query: 369 EKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVAD 423
+KM E G PN TY TL+ + + EL++ M STI LVA+
Sbjct: 564 KKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVAN 618
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 114/444 (25%), Positives = 223/444 (50%)
Query: 1 MNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGM 60
+N L + + A I +++ G+ P+++T +L+ R ++L+ ++ + G
Sbjct: 107 INCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGY 166
Query: 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK 120
+PD++ F +++ + EA+ + ++M GC+P TY +I G G+P+ +L
Sbjct: 167 QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALN 226
Query: 121 LLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAY 180
LL M + K ++ + Y+ ++ + C +++A N+ +M GI+PD TY++L
Sbjct: 227 LLNKMEKGK-IEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCL 285
Query: 181 AQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240
YG A ++L +M ++ PN T ++ + KEG + +A + M + + PN+
Sbjct: 286 CNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNI 345
Query: 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDD 300
V +NSLI GF D + TLM PDVVT++T+++ + A + E+F D
Sbjct: 346 VTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRD 405
Query: 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVK 360
M + G+ + ++ L G+ +A + A+ + M GVHPN++ + T++ G C K
Sbjct: 406 MSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGK 465
Query: 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQL 420
+++AM ++E + + + P++ TY + G +A + +L + KGV+P
Sbjct: 466 LEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNT 525
Query: 421 VADSWRAIGLAREAKRVLKSAEED 444
+ + GL EA + +ED
Sbjct: 526 MISGFCKKGLKEEAYTLFIKMKED 549
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 113/433 (26%), Positives = 222/433 (51%)
Query: 7 KGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSIL 66
KG EA + N + +G P + TY T++ L + +++ + +++ + G+ PDS
Sbjct: 283 KGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTT 342
Query: 67 FNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMS 126
+ +++ + G+V E K+F M+ P +++++ + G +++L +
Sbjct: 343 YRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSV- 401
Query: 127 QDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGET 186
++ + P++ Y IL++ +C K I A N+ +M+ G D VTYNT+ +
Sbjct: 402 KEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKML 461
Query: 187 YRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSL 246
A+++ EM + P+ T I++ G+CK GN+++AM +MKE + ++V +N+L
Sbjct: 462 GEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTL 521
Query: 247 IKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI 306
+ GF + D D + M + P +++S +++A S G + + ++D+M+ I
Sbjct: 522 LDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNI 581
Query: 307 EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMS 366
+P + + + + KGY R+G ES L M G P+ + + T+I G+ M +A
Sbjct: 582 KPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFG 641
Query: 367 IYEKMCEI--GINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADS 424
+ +KM E G+ P++ TY ++L G+ Q AE +L+ M E+GV P +ST + +
Sbjct: 642 LVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMING 701
Query: 425 WRAIGLAREAKRV 437
+ + EA R+
Sbjct: 702 FVSQDNLTEAFRI 714
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 124/424 (29%), Positives = 212/424 (50%)
Query: 2 NILV-GKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGM 60
N+++ G K E + + L P ++TY T++ +L + K + ++ ++ +
Sbjct: 176 NVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDC 235
Query: 61 KPDSILFNAMINA-CSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESL 119
PD I + +I A C +SG V AMK+ +M+D GC P TYN L+ G G+ +E++
Sbjct: 236 YPDVITYTILIEATCRDSG-VGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAI 294
Query: 120 KLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARA 179
K L M +PN T+NI++R+ CS +A ++ M+ G P VT+N L
Sbjct: 295 KFLNDMPSS-GCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINF 353
Query: 180 YAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPN 239
+ G RA +L +M + +PN + ++ G+CKE M+ A+ +L RM +P+
Sbjct: 354 LCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPD 413
Query: 240 LVVFNSLIKGFL-DIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIF 298
+V +N+++ D K D V+ L + G P ++T++T++D + AG GK ++
Sbjct: 414 IVTYNTMLTALCKDGKVEDAVE-ILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLL 472
Query: 299 DDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA 358
D+M ++PD +S L G R G+ +A + G+ PN V F +++ G C +
Sbjct: 473 DEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKS 532
Query: 359 VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTI 418
+ RA+ M G PN +Y L+ G A ELL + KG+ KKS+
Sbjct: 533 RQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLM-KKSSA 591
Query: 419 QLVA 422
+ VA
Sbjct: 592 EQVA 595
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 115/412 (27%), Positives = 216/412 (52%)
Query: 12 EAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMI 71
EA + + ++ +G +P L+TY +V L ++ LSL+ K+E+ ++P +++N +I
Sbjct: 204 EAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTII 263
Query: 72 NACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNV 131
+A NV++A+ +F +M + G +P TYN+LI+ N G+ ++ +LL M + K +
Sbjct: 264 DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK-I 322
Query: 132 KPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQ 191
PN T++ L+ A+ + + EA + +M+ I PD TY++L + + A+
Sbjct: 323 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 382
Query: 192 MLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFL 251
M M + PN T ++ G+CK +++ M M + + N V + +LI GF
Sbjct: 383 MFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFF 442
Query: 252 DIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIH 311
++ D M GV PD++T+S ++D + G + +F+ + ++ +EPDI+
Sbjct: 443 QARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIY 502
Query: 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKM 371
++I+ +G +AG+ + + S+ GV PNVV +TT++SG+C + A +++ +M
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREM 562
Query: 372 CEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVAD 423
E G P+ TY TL+ + + EL++ M STI LV +
Sbjct: 563 KEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVTN 614
|
|
| TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 516 (186.7 bits), Expect = 5.6e-49, P = 5.6e-49
Identities = 118/430 (27%), Positives = 221/430 (51%)
Query: 5 VGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDS 64
V G EA + + ++G P ITYTT++ A + + L L +++ G P++
Sbjct: 362 VRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNT 421
Query: 65 ILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQL 124
+NA+++ + +E +K+ MK +GC P +T+NT++ GN G + ++ +
Sbjct: 422 CTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFRE 481
Query: 125 MSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYG 184
M + +P+ T+N L+ A+ S +A + +M +G TYN L A A+ G
Sbjct: 482 M-KSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKG 540
Query: 185 ETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFN 244
+ E ++ +M++ +P E + +++ Y K GN R R+KE ++ P+ ++
Sbjct: 541 DWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLR 600
Query: 245 SLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKA 304
+L+ + G ++A TL ++ G KPD+V F++++ ++ + + + I + + +
Sbjct: 601 TLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIRED 660
Query: 305 GIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRA 364
G+ PD+ ++ L YVR GE KAE IL ++ K + P++V + TVI G+C MQ A
Sbjct: 661 GLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEA 720
Query: 365 MSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADS 424
+ + +M E GI P + TY T + GY E++++ M + RP + T ++V D
Sbjct: 721 VRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDG 780
Query: 425 WRAIGLAREA 434
+ G EA
Sbjct: 781 YCRAGKYSEA 790
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00016733001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (636 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 548 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-39 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-25 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-21 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-20 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-15 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-07 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 7e-39
Identities = 92/363 (25%), Positives = 163/363 (44%), Gaps = 38/363 (10%)
Query: 27 PTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKI 86
PTL T+ L++ + L ++ V++ G+K D L+ +I+ C++SG VD ++
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 87 FQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWC 146
F +M ++G + T+ LI G G+ ++ +M KNVKP+ +N L+ A
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS-KNVKPDRVVFNALISACG 553
Query: 147 SKNSIEEAWNVVYKMVASG--IQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPN 204
+++ A++V+ +M A I PD +T L +A A G+ RA+++ + ++
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613
Query: 205 ERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALT 264
I V+ ++G+ + A L I D
Sbjct: 614 PEVYTIAVNSCSQKGDWDFA--------------------------LSIYDD-------- 639
Query: 265 LMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAG 324
M++ GVKPD V FS ++D AG + K EI D K GI+ +S L A
Sbjct: 640 -MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698
Query: 325 EPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYE 384
+KA + ++ + P V +I+ C ++ +A+ + +M +G+ PN TY
Sbjct: 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758
Query: 385 TLL 387
LL
Sbjct: 759 ILL 761
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 4e-25
Identities = 86/369 (23%), Positives = 160/369 (43%), Gaps = 61/369 (16%)
Query: 16 IFNCLIEEGHRPTLITYTTLVAALTRQ----KRFKSILSLISKVEKDGMKPDSILFNAMI 71
+F+ ++ G + T+ L+ R K F + + SK +KPD ++FNA+I
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK----NVKPDRVVFNALI 549
Query: 72 NACSESGNVDEAMKIFQKMKDSG--CKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDK 129
+AC +SG VD A + +MK P T L+K N G+ + + ++ Q++ +
Sbjct: 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI-HEY 608
Query: 130 NVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRA 189
N+K Y I V + K + A ++ M G++PD V ++ L
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL------------- 655
Query: 190 EQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKG 249
+ V+G+ G+++ A L ++ + V ++SL+
Sbjct: 656 --------------------VDVAGHA--GDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693
Query: 250 FLDIKDSDGVDKALTLMEEF---GVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI 306
+ K+ KAL L E+ ++P V T + ++ A + K E+ +M + G+
Sbjct: 694 CSNAKNWK---KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750
Query: 307 EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMS 366
P+ +SIL R + +L+ ++ G+ PN+VM I+G C ++R
Sbjct: 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC-ITGLC----LRR--- 802
Query: 367 IYEKMCEIG 375
+EK C +G
Sbjct: 803 -FEKACALG 810
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 8e-21
Identities = 64/214 (29%), Positives = 108/214 (50%), Gaps = 9/214 (4%)
Query: 216 CK-EGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPD 274
CK + +++A RF ++ P L FN L+ +D DG + L L++E G+K D
Sbjct: 416 CKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKAD 471
Query: 275 VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILT 334
++T++ + +G + E+F +MV AG+E ++H F L G RAG+ KA
Sbjct: 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531
Query: 335 SMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKM-CEIG-INPNLKTYETLLWGYGE 392
MR V P+ V+F +IS + + RA + +M E I+P+ T L+
Sbjct: 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591
Query: 393 AKQPWRAEELLQVMEEKGVR--PKKSTIQLVADS 424
A Q RA+E+ Q++ E ++ P+ TI + + S
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 9e-20
Identities = 99/420 (23%), Positives = 178/420 (42%), Gaps = 63/420 (15%)
Query: 1 MNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGM 60
+ LV G EA +F + E+G T+ ++ A ++ L V K G+
Sbjct: 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV 255
Query: 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK 120
D+ + A+I+ S+ G++++A +F M + TT +N+++ GY G EE+L
Sbjct: 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALC 311
Query: 121 LLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAY 180
L M +D V + T++I++R + +E A ++ +G D V NT
Sbjct: 312 LYYEM-RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA-NT----- 364
Query: 181 AQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240
+V Y K G MEDA RM NL
Sbjct: 365 -----------------------------ALVDLYSKWGRMEDARNVFDRMP----RKNL 391
Query: 241 VVFNSLIKGFLDIKDSDGV-DKALTLMEEF---GVKPDVVTFSTIMDAWSSAGLMGKCQE 296
+ +N+LI G+ + G KA+ + E GV P+ VTF ++ A +GL + E
Sbjct: 392 ISWNALIAGY----GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447
Query: 297 IFDDMVKA-GIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGW 355
IF M + I+P ++ + + R G +A +++ R+ P V M+ ++
Sbjct: 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI---RRAPFKPTVNMWAALL--- 501
Query: 356 CNAVKMQRAMSIYEKMCE--IGINP-NLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVR 412
A ++ + + + E G+ P L Y LL Y + + A ++++ ++ KG+
Sbjct: 502 -TACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 7e-19
Identities = 94/419 (22%), Positives = 180/419 (42%), Gaps = 62/419 (14%)
Query: 4 LVGKGKPHEAHYIFNCLIEEGHRPTL--ITYTTLVAALTRQKRFKSILSLISKVEKDGMK 61
LV G+ EA +F ++E G TL TY LV A K + + ++ VE G +
Sbjct: 97 LVACGRHREALELFE-ILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE 155
Query: 62 PDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKL 121
PD + N ++ + G + +A ++F +M + +++ T+I G + G E+ L
Sbjct: 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFAL 211
Query: 122 LQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYA 181
+ M +D + RT+ +++RA S + ++ +G+
Sbjct: 212 FREMWEDGS-DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV--------------- 255
Query: 182 QYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLV 241
G+T+ + C +I Y K G++EDA M E V
Sbjct: 256 -VGDTFVS------------------CALI-DMYSKCGDIEDARCVFDGMPEKTT----V 291
Query: 242 VFNSLIKGFLDIKDSDGVDKALTL---MEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIF 298
+NS++ G+ S ++AL L M + GV D TFS ++ +S L+ ++
Sbjct: 292 AWNSMLAGYALHGYS---EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348
Query: 299 DDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA 358
+++ G DI + L Y + G + A ++ M N++ + +I+G+ N
Sbjct: 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNH 404
Query: 359 VKMQRAMSIYEKMCEIGINPNLKTYETLLWG---YGEAKQPWRAEELLQVMEEKGVRPK 414
+ +A+ ++E+M G+ PN T+ +L G ++Q W + + E ++P+
Sbjct: 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS--ENHRIKPR 461
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 2e-18
Identities = 53/211 (25%), Positives = 107/211 (50%), Gaps = 2/211 (0%)
Query: 8 GKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILF 67
G+ A ++ + E + T YT V + +++ + LS+ ++K G+KPD + F
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652
Query: 68 NAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQ 127
+A+++ +G++D+A +I Q + G K T +Y++L+ N +++L+L + +
Sbjct: 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712
Query: 128 DKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETY 187
K ++P T N L+ A C N + +A V+ +M G+ P+ +TY+ L A + +
Sbjct: 713 IK-LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771
Query: 188 RAEQMLFEMQNNQVRPNERTCGIIVSGYCKE 218
+L + + + ++PN C I G C
Sbjct: 772 VGLDLLSQAKEDGIKPNLVMCRCIT-GLCLR 801
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 88.8 bits (220), Expect = 2e-18
Identities = 69/321 (21%), Positives = 142/321 (44%), Gaps = 40/321 (12%)
Query: 26 RPTLITYTTLVAALTR----QKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVD 81
+P + + L++A + + F + + K E + PD I A++ AC+ +G VD
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDVLAEM--KAETHPIDPDHITVGALMKACANAGQVD 596
Query: 82 EAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNIL 141
A +++Q + + K T Y + G + +L + M + K VKP++ ++ L
Sbjct: 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSAL 655
Query: 142 VRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQV 201
V +++A+ ++ GI+ V+Y++L A + +A ++ ++++ ++
Sbjct: 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715
Query: 202 RPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDK 261
RP T +++ C+ + A+ L MK L + PN + ++ L+ D+D
Sbjct: 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775
Query: 262 ALTLMEEFGVKPD------------------------VVTFST----IMDAWSSAGLMGK 293
L+ +E G+KP+ VV+F + I + W+S LM
Sbjct: 776 LLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM-- 833
Query: 294 CQEIFDDMVKAGIEPDIHVFS 314
++ + + AG P + V S
Sbjct: 834 ---VYRETISAGTLPTMEVLS 851
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 7e-16
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 62 PDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGN 111
PD + +N +I+ + G V+EA+K+F +MK G KP TY+ LI G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 3e-15
Identities = 105/451 (23%), Positives = 183/451 (40%), Gaps = 66/451 (14%)
Query: 8 GKPHEAHYIFNCLIEEGHRPTLITYTTLVAA--LTRQKRFKSILSLISKVEKDGMKPDSI 65
G+ E +F + E P L+T T++++A L +R + V K G D
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR--EMHGYVVKTGFAVDVS 324
Query: 66 LFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLM 125
+ N++I G+ EA K+F +M+ K S + +I GY G P+++L+ LM
Sbjct: 325 VCNSLIQMYLSLGSWGEAEKVFSRME---TKDAVS-WTAMISGYEKNGLPDKALETYALM 380
Query: 126 SQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGE 185
QD NV P++ T ++ A ++ V K+ + ++Y +A A
Sbjct: 381 EQD-NVSPDEITIASVLSACACLGDLD----VGVKLHELAERKGLISYVVVANA------ 429
Query: 186 TYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNS 245
L EM Y K ++ A+ + + E +++ + S
Sbjct: 430 -------LIEM------------------YSKCKCIDKALEVFHNIPE----KDVISWTS 460
Query: 246 LIKGFLDIKDSDGVDKALTLMEEF--GVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVK 303
+I G + ++ +AL + +KP+ VT + A + G + +EI +++
Sbjct: 461 IIAGL---RLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517
Query: 304 AGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQR 363
GI D + + L YVR G A + S K +VV + +++G+ K
Sbjct: 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSM 572
Query: 364 AMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK-GVRPKKSTIQLVA 422
A+ ++ +M E G+NP+ T+ +LL + + E MEEK + P V
Sbjct: 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632
Query: 423 DSWRAIGLAREAKRVLKSAEEDRQSMPNKKD 453
D L R K L A MP D
Sbjct: 633 DL-----LGRAGK--LTEAYNFINKMPITPD 656
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 3e-13
Identities = 72/371 (19%), Positives = 148/371 (39%), Gaps = 45/371 (12%)
Query: 113 GKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVT 172
G+ E+L+L +++ TY+ LV A + SI V + + +SG +PD
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 173 YNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMK 232
N + + + G A ++ EM N + G I+ G GN +A M
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 233 ELEVHPNLVVFNSLIK-------------------------------GFLDIKDSDG-VD 260
E F +++ +D+ G ++
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276
Query: 261 KALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGY 320
A + + K V +++++ ++ G + ++ +M +G+ D FSI+ + +
Sbjct: 277 DARCVFDGMPEK-TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335
Query: 321 VRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINP-- 378
R + A+ + + G ++V T ++ + +M+ A +++++M P
Sbjct: 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM------PRK 389
Query: 379 NLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVL 438
NL ++ L+ GYG + +A E+ + M +GV P T V + R GL+ + +
Sbjct: 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449
Query: 439 KSAEEDRQSMP 449
+S E+ + P
Sbjct: 450 QSMSENHRIKP 460
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 1e-12
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 97 PTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWC 146
P TYNTLI GY GK EE+LKL M + + +KPN TY+IL+ C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEM-KKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 3e-12
Identities = 18/50 (36%), Positives = 35/50 (70%)
Query: 273 PDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR 322
PDVVT++T++D + G + + ++F++M K GI+P+++ +SIL G +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 4e-11
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 133 PNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQ 182
P+ TYN L+ +C K +EEA + +M GI+P+ TY+ L +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 70/360 (19%), Positives = 154/360 (42%), Gaps = 33/360 (9%)
Query: 38 ALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKP 97
AL + + L L+ +++ + D + A+ C V+E ++ + S
Sbjct: 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL 119
Query: 98 TTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNV 157
N ++ + G+ + + M + +++ ++N+LV + +EA +
Sbjct: 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPE-RDL----FSWNVLVGGYAKAGYFDEALCL 174
Query: 158 VYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQML-------FEMQNNQVRPNERTCGI 210
++M+ +G++PD T+ + R + R ++ FE+ + V
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA------- 227
Query: 211 IVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTL---ME 267
+++ Y K G++ A RM + + +N++I G+ + + + L L M
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFE---NGECLEGLELFFTMR 280
Query: 268 EFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQ 327
E V PD++T ++++ A G +E+ +VK G D+ V + L + Y+ G
Sbjct: 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340
Query: 328 KAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLL 387
+AE + + M + V +T +ISG+ +A+ Y M + ++P+ T ++L
Sbjct: 341 EAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 2e-10
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 343 PNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390
P+VV + T+I G+C K++ A+ ++ +M + GI PN+ TY L+ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 3e-10
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 203 PNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGF 250
P+ T ++ GYCK+G +E+A++ MK+ + PN+ ++ LI G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 78/421 (18%), Positives = 153/421 (36%), Gaps = 83/421 (19%)
Query: 68 NAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK------- 120
N+ + A G +++A+K+ + M++ Y L + EE +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 121 ------------LLQLMSQDKNV--------KPNDR---TYNILVRAWCSKNSIEEAWNV 157
+L + + + K +R ++N+LV + +EA +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 158 VYKMVASGIQPDAVTY-----------------------------------NTLARAYAQ 182
++M+ +G++PD T+ N L Y +
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 183 YGETYRAEQMLFEM-QNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLV 241
G+ A + M + + + N G +G C EG + + M+EL V P+L+
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG-----LELFFTMRELSVDPDLM 289
Query: 242 VFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDM 301
S+I + D + + + G DV ++++ + S G G+ +++F M
Sbjct: 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349
Query: 302 VKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKM 361
D ++ + GY + G P KA M + V P+ + +V+S +
Sbjct: 350 ETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405
Query: 362 QRAMSIYEKMCEIGINPNLKTY----ETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKST 417
+ K+ E+ L +Y L+ Y + K +A E+ + EK V S
Sbjct: 406 DVGV----KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSI 461
Query: 418 I 418
I
Sbjct: 462 I 462
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 69/320 (21%), Positives = 135/320 (42%), Gaps = 29/320 (9%)
Query: 8 GKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILF 67
G P +A + + ++ P IT ++++A + L E+ G+ ++
Sbjct: 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427
Query: 68 NAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQ 127
NA+I S+ +D+A+++F + + K S + ++I G + E+L + M
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIPE---KDVIS-WTSIIAGLRLNNRCFEALIFFRQMLL 483
Query: 128 DKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETY 187
+KPN T + A ++ + ++ +GI D N L Y + G
Sbjct: 484 T--LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541
Query: 188 RAEQMLFEMQNNQVRPNERTCG---IIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFN 244
A NQ +E+ I+++GY G A+ RM E V+P+ V F
Sbjct: 542 YAW--------NQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593
Query: 245 SLI-----KGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFD 299
SL+ G + + G++ ++ E++ + P++ ++ ++D A GK E ++
Sbjct: 594 SLLCACSRSGMV----TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA---GKLTEAYN 646
Query: 300 DMVKAGIEPDIHVFSILAKG 319
+ K I PD V+ L
Sbjct: 647 FINKMPITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 4e-09
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 308 PDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN 357
PD+ ++ L GY + G+ ++A + M+K G+ PNV ++ +I G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 7e-09
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 168 PDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCK 217
PD VTYNTL Y + G+ A ++ EM+ ++PN T I++ G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 3e-08
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 6/50 (12%)
Query: 238 PNLVVFNSLIKGFLDIKDSDGVDKALTL---MEEFGVKPDVVTFSTIMDA 284
P++V +N+LI G+ V++AL L M++ G+KP+V T+S ++D
Sbjct: 1 PDVVTYNTLIDGYCKKGK---VEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 10/146 (6%)
Query: 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK 120
+ D + +N ++ G A+++F +M +SG P T+ +L+ G + L+
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610
Query: 121 LLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARA- 179
M + ++ PN + Y +V + EA+N + KM I PD + L A
Sbjct: 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNAC 667
Query: 180 ----YAQYGETYRAEQMLFEMQNNQV 201
+ + GE A Q +FE+ N V
Sbjct: 668 RIHRHVELGEL--AAQHIFELDPNSV 691
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 7e-08
Identities = 11/35 (31%), Positives = 25/35 (71%)
Query: 65 ILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTT 99
+ +N +I+ ++G V+EA+++F++MK+ G +P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 7e-07
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 201 VRPNERTCGIIVSGYCKEGNMEDAMRFLYRMK 232
++P+ T ++ G C+ G +++A+ L M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 7e-07
Identities = 9/31 (29%), Positives = 24/31 (77%)
Query: 65 ILFNAMINACSESGNVDEAMKIFQKMKDSGC 95
+ +N++I+ ++G ++EA+++F++MK+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 66 LFNAMINACSESGNVDEAMKIFQKMKDSGCKP 97
+NA++ A +++G+ D A+ + ++MK SG KP
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 4e-06
Identities = 12/48 (25%), Positives = 29/48 (60%)
Query: 27 PTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINAC 74
P ++TY TL+ ++ + + L L ++++K G+KP+ ++ +I+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 9e-06
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 58 DGMKPDSILFNAMINACSESGNVDEAMKIFQKMK 91
G+KPD + +N +I+ +G VDEA+++ +M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 1e-05
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 93 SGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMS 126
G KP TYNTLI G G+ +E+++LL M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 136 RTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDA 170
TYN L+ C +EEA + +M GI+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 206 RTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPN 239
T ++ G CK G +E+A+ MKE + P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 3e-05
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 129 KNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMV 162
K +KP+ TYN L+ C ++EA ++ +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 3e-05
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 340 GVHPNVVMFTTVISGWCNAVKMQRAMSIYEKM 371
G+ P+VV + T+I G C A ++ A+ + ++M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 101 TYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPND 135
TYNTLI G G+ EE+L+L + M +++ ++P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEM-KERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 1e-04
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 269 FGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMV 302
G+KPDVVT++T++D AG + + E+ D+M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 311 HVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNV 345
++ L G +AG ++A + M++ G+ P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 380 LKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP 413
L+TY LL +A P A +L+ M+ G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 3e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 136 RTYNILVRAWCSKNSIEEAWNVVYKMVASGIQP 168
TYN L+ A + A V+ +M ASG++P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 100 STYNTLIKGYGNVGKPEESLKLLQLM 125
TYN+LI GY GK EE+L+L + M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 7e-04
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 310 IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHP 343
+ ++ L +AG+P A ++L M+ G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 8e-04
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 207 TCGIIVSGYCKEGNMEDAMRFLYRMKELEV 236
T ++SGYCK G +E+A+ MKE V
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDI 310
VT++T++D AG + + E+F +M + GIEPD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 378 PNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP 413
P++ TY TL+ GY + + A +L M+++G++P
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKP 36
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI 306
VT+++++ + AG + + E+F +M + G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 170 AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRP 203
TYN L A A+ G+ A +L EM+ + ++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 240 LVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKP 273
L +N+L+ D D L M+ G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.2 bits (92), Expect = 0.002
Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 4/164 (2%)
Query: 32 YTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKM- 90
L L +++ L L+ K PD + A E G+ +EA+++++K
Sbjct: 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKAL 157
Query: 91 -KDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKN 149
D L +G+ EE+L+LL+ N + L +
Sbjct: 158 ELDPELNELAEALLALGALLEALGRYEEALELLEKA-LKLNPDDDAEALLNLGLLYLKLG 216
Query: 150 SIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQML 193
EEA Y+ +A LA + G A + L
Sbjct: 217 KYEEA-LEYYEKALELDPDNAEALYNLALLLLELGRYEEALEAL 259
|
Length = 291 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 1 MNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAAL 39
++ KGK EA +FN + + G +P + TY+ L+ L
Sbjct: 10 IDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 548 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.93 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.9 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.89 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.83 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.83 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.8 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.8 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.8 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.77 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.77 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.75 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.74 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.72 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.72 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.72 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.71 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.7 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.7 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.68 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.67 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.66 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.66 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.65 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.65 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.63 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.62 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.61 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.6 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.59 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.58 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.53 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.52 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.52 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.52 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.51 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.5 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.5 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.5 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.49 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.46 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.45 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.45 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.44 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.42 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.42 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.41 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.39 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.39 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.38 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.38 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.37 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.35 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.34 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.34 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.31 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.29 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.24 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.23 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.22 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.2 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.2 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.18 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.18 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.18 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.18 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.18 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.16 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.16 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.14 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.12 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.1 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.1 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.1 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.1 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.06 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.04 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.98 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.95 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.92 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.9 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.86 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.86 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.85 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.85 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.83 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.82 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.81 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.8 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.74 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.74 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.73 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.71 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.7 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.7 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.69 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.68 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.67 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.62 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.62 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.6 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.52 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.51 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.51 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.49 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.49 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.46 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.43 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.4 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.35 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.3 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.29 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.25 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.22 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.21 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.19 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.16 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.1 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.09 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.08 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.07 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.03 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.01 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.0 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.99 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.98 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.97 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.96 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.94 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.91 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.9 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.9 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.9 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.89 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.89 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.87 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.87 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.87 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.86 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.85 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.85 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.82 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.82 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.81 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.81 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.8 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.77 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.77 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.76 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.76 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.75 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.74 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.73 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.72 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.71 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.69 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.68 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.66 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.65 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.65 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.64 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.63 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.61 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.57 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.48 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.46 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.44 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.42 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.41 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.36 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.36 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.34 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.34 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.33 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.32 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.3 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.28 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.27 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.25 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.23 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.13 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.12 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.1 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.07 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.05 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.05 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.04 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.02 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.89 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.86 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.82 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.8 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.77 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.76 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.75 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.74 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.74 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.72 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.64 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.64 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.64 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.61 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.6 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.6 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.57 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.54 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.53 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.51 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.51 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.49 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.47 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.45 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.43 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.43 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.38 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.18 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.18 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.15 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.15 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.02 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.63 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.61 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.61 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.58 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.53 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.53 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.5 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.46 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.45 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.42 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.35 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.34 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.34 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.24 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.19 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.14 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.11 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.1 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.1 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 94.91 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.89 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.89 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.88 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.81 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.48 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.44 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.41 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.34 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.25 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.23 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 94.22 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.2 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.05 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.97 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.92 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.92 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.91 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.79 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.75 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.7 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.54 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.39 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.97 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.8 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.69 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.49 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.46 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 92.33 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.27 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.2 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.94 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.69 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.31 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.12 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.96 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.59 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.55 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.41 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.32 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.25 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.16 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.06 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.87 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.83 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.34 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.26 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.12 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.02 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 88.91 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 88.88 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 88.87 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.84 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.68 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 88.3 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.14 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.07 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.06 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 87.97 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.94 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.83 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.77 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.74 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.63 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 87.42 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 87.39 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 87.35 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.84 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 85.99 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.94 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.42 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 85.3 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 84.94 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 84.65 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 84.42 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.27 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 83.46 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.09 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.63 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 81.94 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 81.92 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 81.65 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.62 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.39 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 81.28 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 81.07 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-70 Score=574.93 Aligned_cols=503 Identities=18% Similarity=0.250 Sum_probs=473.8
Q ss_pred CccccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008925 1 MNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV 80 (548)
Q Consensus 1 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 80 (548)
|+.|.+.|++++|..+|+.|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|.+.|+.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 356889999999999999984 4788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008925 81 DEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYK 160 (548)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 160 (548)
+.|.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999995 47899999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008925 161 MVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240 (548)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 240 (548)
|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|++|.+ +|.
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 455 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDV 455 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864 688
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGY 320 (548)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (548)
.+|+.++.+|.+.|+.++|..+|++|.. +++||..+|+.++.+|++.|+++.+.+++..+.+.|+.++..+++.|+.+|
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 9999999999999999999999999986 589999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 321 VRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAE 400 (548)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (548)
+++|++++|..+|+.+ .||..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.
T Consensus 535 ~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~ 609 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609 (857)
T ss_pred HHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence 9999999999999987 48999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hccCCCCC------------cchhHHHHHHHhhccc
Q 008925 401 ELLQVME-EKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE-EDRQSMPN------------KKDEIAVESIHRKQNL 466 (548)
Q Consensus 401 ~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~------------~~~~~~~~~l~~~~~~ 466 (548)
++|+.|. +.|+.|+..+|.+++++|.+.|++++|.+++++|+ +++...|+ +..+.+++.+.++.
T Consensus 610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~-- 687 (857)
T PLN03077 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELD-- 687 (857)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--
Confidence 9999999 78999999999999999999999999999999986 55544441 12344456666654
Q ss_pred cccccccccccccccccCCCChhhhhhhhhhccc-----ccccchhhhhHHh-hccCCCCCchh
Q 008925 467 SASNSTFLQIPGVVSSEHNGSSAAKIRSQIVLRS-----DTVWTATKSLFVN-TYGSGVQPMVV 524 (548)
Q Consensus 467 ~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~-----g~~w~~~~~~~~~-~~~~~~~~~~~ 524 (548)
|.+.+.|..|+++|...|+|++|.++|+.|.+++ |+||+++++++|. ..||.+||...
T Consensus 688 p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~ 751 (857)
T PLN03077 688 PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIK 751 (857)
T ss_pred CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchH
Confidence 4577889999999999999999999999999988 9999999999999 99999999874
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=533.69 Aligned_cols=483 Identities=20% Similarity=0.296 Sum_probs=284.4
Q ss_pred ccccCChhhHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEG-HRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
+.+.|++++|+++|+.|...+ ..|+..+|+.++.++.+.++++.+.+++..|.+.|+.||..+|+.|+.+|++.|++++
T Consensus 97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~ 176 (697)
T PLN03081 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID 176 (697)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHH
Confidence 444555555555555555432 3455555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMV 162 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 162 (548)
|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+. +..|+..+|+.++.+++..|..+.+.+++..+.
T Consensus 177 A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~ 251 (697)
T PLN03081 177 ARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251 (697)
T ss_pred HHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 555555553 245555555555555555555555555555432 345555555555555555555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008925 163 ASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVV 242 (548)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 242 (548)
+.|+.||..+|+.|+.+|++.|++++|.++|+.|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 252 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 555555555555555555555555555555555532 3555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008925 243 FNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR 322 (548)
Q Consensus 243 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (548)
|+.++.+|++.|+++.|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|. .||..+|+.|+.+|++
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555553 3455555555555555
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 323 AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCE-IGINPNLKTYETLLWGYGEAKQPWRAEE 401 (548)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (548)
.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 555555555555555555555555555555555555555555555555543 3555555555555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhcccccccccccccccccc
Q 008925 402 LLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVS 481 (548)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~ 481 (548)
++++| ++.|+..+|..++.+|...|+++.|..+++++. ...|.+...|..|+++|.
T Consensus 484 ~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~---------------------~~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 484 MIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY---------------------GMGPEKLNNYVVLLNLYN 539 (697)
T ss_pred HHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh---------------------CCCCCCCcchHHHHHHHH
Confidence 54433 344555555555555555555555555555432 223446678999999999
Q ss_pred ccCCCChhhhhhhhhhccc-----ccccchhhhhHHh-hccCCCCCch
Q 008925 482 SEHNGSSAAKIRSQIVLRS-----DTVWTATKSLFVN-TYGSGVQPMV 523 (548)
Q Consensus 482 ~~~~~~~a~~~~~~~~~~~-----g~~w~~~~~~~~~-~~~~~~~~~~ 523 (548)
+.|+|++|.++++.|.+++ |+||+++++++|. ..||..||..
T Consensus 540 ~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~ 587 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQS 587 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccH
Confidence 9999999999999999888 9999999999999 9999999975
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-63 Score=508.19 Aligned_cols=491 Identities=20% Similarity=0.298 Sum_probs=409.1
Q ss_pred ccccccCChhhHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008925 2 NILVGKGKPHEAHYIFNCLIEEGH-RPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV 80 (548)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 80 (548)
+.+.+.|++++|+++|++|.+.|. .++...++.++..|.+.|.+++|..+|+.|.. ||..+|+.++.+|++.|++
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~ 453 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDI 453 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCH
Confidence 356788999999999999999885 45667778888888888899999988888753 7888999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008925 81 DEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYK 160 (548)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 160 (548)
+.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. ++.||..+|+.++.+|++.|++++|.++|++
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 999999999998888899999999999999999999999999998764 5788999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008925 161 MVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQN--NQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHP 238 (548)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 238 (548)
|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.+++|
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99888889999999999999999999999999999876 5678898999999999999999999999999999888888
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 239 NLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAK 318 (548)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (548)
+..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999888889999999999999999999999999999998888899999999999
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWR 398 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (548)
+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999988888899999999999999999999999999999888888999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHHHhccCCCCC-----
Q 008925 399 AEELLQVMEEKGVRPKKSTIQLVADSWRA----I-------------------GLAREAKRVLKSAEEDRQSMPN----- 450 (548)
Q Consensus 399 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~~~----- 450 (548)
|.+++++|.+.|+.||..++..++..|.+ + +..++|..+|++|.+..-....
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~ 852 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQ 852 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 99999999988899998888888765432 1 2347899999988865422110
Q ss_pred -------cchhHHHHHHHh-h--ccccccccccccccccccccCCC-Chhhhhhhhhhccc
Q 008925 451 -------KKDEIAVESIHR-K--QNLSASNSTFLQIPGVVSSEHNG-SSAAKIRSQIVLRS 500 (548)
Q Consensus 451 -------~~~~~~~~~l~~-~--~~~~~~~~~~~~l~~~y~~~~~~-~~a~~~~~~~~~~~ 500 (548)
.........+.. + .+.+++...|..|-+-+ |++ ++|..+.+.|...|
T Consensus 853 vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~G 910 (1060)
T PLN03218 853 VLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcC
Confidence 011111222222 2 23334444555554433 444 47999999998888
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-61 Score=493.42 Aligned_cols=435 Identities=22% Similarity=0.353 Sum_probs=340.5
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.+.+.|..++|+.+|+.|.. |+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.|+.+|++.|++++
T Consensus 415 ~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~ 490 (1060)
T PLN03218 415 ACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490 (1060)
T ss_pred HHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHH
Confidence 45667778888887777642 77788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMV 162 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 162 (548)
|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|... ++.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 491 A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888887777788888888888888888888888888887653 577888888888888888888888888888886
Q ss_pred H--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008925 163 A--SGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240 (548)
Q Consensus 163 ~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 240 (548)
. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~ 649 (1060)
T PLN03218 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649 (1060)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Confidence 5 46777888888888888888888888888888888877778888888888888888888888888888887777888
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGY 320 (548)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (548)
.+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.|+.+|
T Consensus 650 ~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy 729 (1060)
T PLN03218 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 88888888888888888888888888887777888888888888888888888888888887777778888888888888
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--------
Q 008925 321 VRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE-------- 392 (548)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------- 392 (548)
++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.|+..|.+
T Consensus 730 ~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l 809 (1060)
T PLN03218 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACAL 809 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 888888888888888887777888888888888888888888888888888887888888888777755431
Q ss_pred ---------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 393 ---------------AKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 393 ---------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
.+..++|..+|++|.+.|+.||..+|..++.+++..+..+.+..+++.+.
T Consensus 810 ~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 810 GEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred hhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 12246788888888888888887777777766666666776666666554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-58 Score=484.97 Aligned_cols=481 Identities=18% Similarity=0.287 Sum_probs=330.1
Q ss_pred ccccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 008925 2 NILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVD 81 (548)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 81 (548)
+.|.+.|+++.|.++|++|. .||..+|+.++.+|++.|++++|+++|++|...|+.||..+|+.++.+|...+++.
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 34667777777777777763 35677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 008925 82 EAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKM 161 (548)
Q Consensus 82 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 161 (548)
.+.+++..+.+.|+.|+..+++.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777764 356677777777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 008925 162 VASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLV 241 (548)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 241 (548)
.+.|+.||..||+.++.+|.+.|+.+.|.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~ 355 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAV 355 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCee
Confidence 77777777777777777777777777777777777777777777777777777777777777777777764 35666
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 242 VFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYV 321 (548)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (548)
+|+.++.+|.+.|++++|.++|++|.+.++.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+.+|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------
Q 008925 322 RAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCE---------------------------- 373 (548)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------------------- 373 (548)
+.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+|++|..
T Consensus 436 k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred HcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 77777777776666643 3455555555555555555555555555543
Q ss_pred ------cCC------------------------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008925 374 ------IGI------------------------------NPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKST 417 (548)
Q Consensus 374 ------~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 417 (548)
.|+ .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..|
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 111 34556677777777888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC--------------cchhHHHHHHHhhcccccccccccccccccccc
Q 008925 418 IQLVADSWRAIGLAREAKRVLKSAEEDRQSMPN--------------KKDEIAVESIHRKQNLSASNSTFLQIPGVVSSE 483 (548)
Q Consensus 418 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~ 483 (548)
|..++.+|.+.|++++|.++|++|.+..+..|. ...+.+.+.+.++. ..++...|..|-+.|...
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITPDPAVWGALLNACRIH 670 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHc
Confidence 888888888888888888888888754444332 11122222222222 233444555555556566
Q ss_pred CCCChhhhhhhhhhccc
Q 008925 484 HNGSSAAKIRSQIVLRS 500 (548)
Q Consensus 484 ~~~~~a~~~~~~~~~~~ 500 (548)
|+.+.++.+-+++.+.+
T Consensus 671 ~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 671 RHVELGELAAQHIFELD 687 (857)
T ss_pred CChHHHHHHHHHHHhhC
Confidence 66666665555554433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-57 Score=466.28 Aligned_cols=438 Identities=18% Similarity=0.269 Sum_probs=412.5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 008925 27 PTLITYTTLVAALTRQKRFKSILSLISKVEKDG-MKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTL 105 (548)
Q Consensus 27 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 105 (548)
++..+|+.++..+.+.|++++|+++|+.|...+ +.||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 355689999999999999999999999998764 6899999999999999999999999999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008925 106 IKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGE 185 (548)
Q Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 185 (548)
+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++...|.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 999999999999999999995 479999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 008925 186 TYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTL 265 (548)
Q Consensus 186 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 265 (548)
.+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|. ++|..+|+.++.+|++.|++++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999996 47899999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH
Q 008925 266 MEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNV 345 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 345 (548)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|++||..+++.|+.+|+++|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999964 799
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE-KGVRPKKSTIQLVADS 424 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~ 424 (548)
.+|+.|+.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|.+++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999985 6999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhccccccccccccccccccccCCCChhhhhhhhhhccc
Q 008925 425 WRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEHNGSSAAKIRSQIVLRS 500 (548)
Q Consensus 425 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~ 500 (548)
|.+.|++++|.+++++++ . .++...|..|.+.+...|+.+.|.++.+++.+.+
T Consensus 472 l~r~G~~~eA~~~~~~~~-------~----------------~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~ 524 (697)
T PLN03081 472 LGREGLLDEAYAMIRRAP-------F----------------KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG 524 (697)
T ss_pred HHhcCCHHHHHHHHHHCC-------C----------------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC
Confidence 999999999999998752 1 1123345556677888889999999888886655
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=292.33 Aligned_cols=483 Identities=12% Similarity=0.039 Sum_probs=380.1
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.+...|++++|...|+.+.+..+. +...+..++..+...|++++|.+.++.+.+.. +........++..+.+.|++++
T Consensus 372 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 449 (899)
T TIGR02917 372 AYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDK 449 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHH
Confidence 467789999999999999886543 66778888888999999999999999988764 2334456667788888999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMV 162 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 162 (548)
|..+++.+... .+.+..++..+...+...|++++|.+.|+++.... +.+...+..++..+...|++++|.+.++++.
T Consensus 450 A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 450 ALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999988775 35567788888889999999999999998887642 4556777888888888999999999999888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008925 163 ASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVV 242 (548)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 242 (548)
+.+ +.+..++..+...+...|++++|...++++...... +...+..++..+...|++++|..+++++.+.. +.+...
T Consensus 527 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 603 (899)
T TIGR02917 527 TID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEA 603 (899)
T ss_pred HhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 765 556778888888888899999999998888776443 66677778888888899999999988887754 567788
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008925 243 FNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR 322 (548)
Q Consensus 243 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (548)
|..++..+...|++++|...++.+.+.. +.+...+..+..++...|++++|..+++++.+.. +.+..++..++..+..
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 8888888888899999999888887764 3356777788888888899999999988888765 5667788888888888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008925 323 AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEEL 402 (548)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 402 (548)
.|++++|..+++.+.+.. +++...+..++..+...|++++|.+.|+++...+ |+..++..++.++.+.|++++|.+.
T Consensus 682 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHH
Confidence 888999988888888764 3466677788888888888888988888888763 5557777888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC------------cchhHHHHHHHh-hcccccc
Q 008925 403 LQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPN------------KKDEIAVESIHR-KQNLSAS 469 (548)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~-~~~~~~~ 469 (548)
++++.+.. +.+...+..++.++...|++++|+..++++.+..|..+. .. ..+.+.+.+ +...|.+
T Consensus 759 ~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~ 836 (899)
T TIGR02917 759 LEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNI 836 (899)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCC
Confidence 88888653 345567778888888888888888888888877665431 11 223333333 2334455
Q ss_pred ccccccccccccccCCCChhhhhhhhhhccc
Q 008925 470 NSTFLQIPGVVSSEHNGSSAAKIRSQIVLRS 500 (548)
Q Consensus 470 ~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~ 500 (548)
+..+..+|.+|...|++++|.+..+++...+
T Consensus 837 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 837 PAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5566678888888899999999888888766
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=288.15 Aligned_cols=483 Identities=14% Similarity=0.076 Sum_probs=376.7
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.+...|++++|+..++.+.+..+ .+...+..++..+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHH
Confidence 45678888889888888887643 366778888888888889999998888887763 4466677788888888888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMV 162 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 162 (548)
|.+.|+.+.+.. +........++..+.+.|++++|+.+++.+... .+++...+..++..+...|++++|...|+++.
T Consensus 416 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 416 AIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred HHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 988888887764 223455666778888888899998888888764 35667788888888888889999999888888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008925 163 ASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVV 242 (548)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 242 (548)
+.. +.+...+..++..+...|++++|.+.++.+.+..+. +..++..+...+.+.|++++|..+++++...+ +.+...
T Consensus 493 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 569 (899)
T TIGR02917 493 SIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEP 569 (899)
T ss_pred hhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhH
Confidence 764 445667778888888888998898888888776543 67778888888888888999988888887754 556677
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008925 243 FNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR 322 (548)
Q Consensus 243 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (548)
+..++..+...|++++|..+++.+.+.. +.+...+..++.++...|++++|...++.+.+.. +.+...+..++.++..
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAV 647 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 7888888888888888888888887754 4467788888888888889999998888888765 5567778888888888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008925 323 AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEEL 402 (548)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 402 (548)
.|++++|..+++++.+.. +.+..++..++..+...|++++|.++++.+.+.. +++...+..++..+...|++++|...
T Consensus 648 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 648 MKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 889999998888888753 3356778888888888889999999888888765 66777888888888888999999998
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC------------CcchhHHHHHHHh-hcccccc
Q 008925 403 LQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP------------NKKDEIAVESIHR-KQNLSAS 469 (548)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~-~~~~~~~ 469 (548)
++++.+. .|+..++..++.++.+.|++++|.+.++++.+..|..+ ......+...+.+ +...|.+
T Consensus 726 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 803 (899)
T TIGR02917 726 YRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN 803 (899)
T ss_pred HHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 8888874 45557777788888888999999888888887666543 1122223322222 2344556
Q ss_pred ccccccccccccccCCCChhhhhhhhhhccc
Q 008925 470 NSTFLQIPGVVSSEHNGSSAAKIRSQIVLRS 500 (548)
Q Consensus 470 ~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~ 500 (548)
+..+..++.+|...|+ ++|.+..++.....
T Consensus 804 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 804 AVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 6677778888888888 77888888776654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=212.49 Aligned_cols=428 Identities=14% Similarity=0.116 Sum_probs=350.8
Q ss_pred cccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 5 VGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAM 84 (548)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 84 (548)
.+.|++.+|.+.-...-+.++. +......+...+.+..+++....--....+. .+.-..+|..+...+-..|+++.|+
T Consensus 59 yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al 136 (966)
T KOG4626|consen 59 YQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDAL 136 (966)
T ss_pred HhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHH
Confidence 4667777777776665554332 3334444555566666666655544444443 2445678999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHH
Q 008925 85 KIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTY-NILVRAWCSKNSIEEAWNVVYKMVA 163 (548)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~ 163 (548)
.+++.+++.. +.....|..+..++...|+.+.|.+.|.+..+. .|+.... ..+....-..|++++|...|.+.++
T Consensus 137 ~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 137 ALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 9999999863 336788999999999999999999999988874 5665443 4445555668999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008925 164 SGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVF 243 (548)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 243 (548)
.. +--...|+.|.-.+-..|+...|+..|++..+.++. =...|-.|+..|...+.+++|+..+.++.... +.....+
T Consensus 213 ~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~ 289 (966)
T KOG4626|consen 213 TQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAH 289 (966)
T ss_pred hC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhhc
Confidence 63 223678999999999999999999999999876443 35678889999999999999999999988754 4556888
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 008925 244 NSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRA 323 (548)
Q Consensus 244 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (548)
..+...|..+|+.+-|+..+++.++..+. -+..|+.+..++...|++.+|...|...+... +....+.+.|...|...
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQ 367 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 89999999999999999999999987532 46789999999999999999999999999875 55677899999999999
Q ss_pred CCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 008925 324 GEPQKAESILTSMRKYGVHPNV-VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPN-LKTYETLLWGYGEAKQPWRAEE 401 (548)
Q Consensus 324 g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 401 (548)
|.+++|..+|....+- .|.. ...+.|...|-++|++++|+..|++++.. .|+ ...|+.++..|-..|+.+.|+.
T Consensus 368 ~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred ccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHH
Confidence 9999999999999884 5554 47899999999999999999999999985 565 4789999999999999999999
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 402 LLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 402 ~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
.+.+++. +.|... ....++.++..+|+..+|+.-++.++..+|.+|
T Consensus 444 ~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 444 CYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 9999988 467755 888999999999999999999999999999888
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-24 Score=234.67 Aligned_cols=482 Identities=11% Similarity=0.037 Sum_probs=288.3
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLI-TYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVD 81 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 81 (548)
.+...|++++|+..|+.+.+.+++ +.. ............|+.++|++.++++.+.. |.+...+..+...+...|+.+
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHH
Confidence 356789999999999999876433 332 22222222335689999999999998874 556778888889999999999
Q ss_pred HHHHHHHHHHhcCC----------------C----------------CCHHHH---------------------HHHHHH
Q 008925 82 EAMKIFQKMKDSGC----------------K----------------PTTSTY---------------------NTLIKG 108 (548)
Q Consensus 82 ~A~~~~~~~~~~~~----------------~----------------~~~~~~---------------------~~l~~~ 108 (548)
+|++.++++..... . |+.... ......
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 99999998754310 0 100000 012344
Q ss_pred HhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHH------------HH
Q 008925 109 YGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQP-DAVTY------------NT 175 (548)
Q Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~------------~~ 175 (548)
+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++.++..... ....+ ..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 566788888988888887752 4567788888888888899999999888888753211 11111 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----
Q 008925 176 LARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFL---- 251 (548)
Q Consensus 176 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 251 (548)
+...+.+.|++++|+..|+++.+..+. +...+..+..++...|++++|++.|+++++.. +.+...+..+...+.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCH
Confidence 345667888888999988888877543 56677778888888899999999888888754 334444444444432
Q ss_pred --------------------------------------cCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhH
Q 008925 252 --------------------------------------DIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGK 293 (548)
Q Consensus 252 --------------------------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 293 (548)
..|++++|.+.+++..+..+. ++..+..+...+...|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 334444444444444443211 23333444444444444444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHhccCChHHH
Q 008925 294 CQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVV---------MFTTVISGWCNAVKMQRA 364 (548)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---------~~~~l~~~~~~~g~~~~A 364 (548)
|...++++++.. +.+...+..+...+...+++++|+..++.+......++.. .+..+...+...|+.++|
T Consensus 514 A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 444444444332 2233333333333333344444443333322110000000 011223334445555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008925 365 MSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEED 444 (548)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (548)
+++++ . .+++...+..+...+.+.|++++|+..|+++++.. +.+...+..++.++...|++++|++.++++++.
T Consensus 593 ~~~l~----~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLR----Q-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHH----h-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 55554 1 24556666777777778888888888888777642 223457777777777788888888888877765
Q ss_pred cCCCCC------------cchhHHHHHHHhhc-ccccc------ccccccccccccccCCCChhhhhhhhhhc
Q 008925 445 RQSMPN------------KKDEIAVESIHRKQ-NLSAS------NSTFLQIPGVVSSEHNGSSAAKIRSQIVL 498 (548)
Q Consensus 445 ~~~~~~------------~~~~~~~~~l~~~~-~~~~~------~~~~~~l~~~y~~~~~~~~a~~~~~~~~~ 498 (548)
.|..+. .....+.+.+.+.. ..+.+ ...+..++.+|...|++++|.+.+++...
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 544331 11222222222221 11111 12344578999999999999998887753
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-24 Score=229.91 Aligned_cols=486 Identities=11% Similarity=0.055 Sum_probs=270.8
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH----------------
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILF---------------- 67 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---------------- 67 (548)
+...++.+.|.+.++++....+. ++.++..++..+.+.|+.++|.+.++++.+.. |.+....
T Consensus 38 ~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~ 115 (1157)
T PRK11447 38 GEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQA 115 (1157)
T ss_pred HHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhH
Confidence 34556666777777766665433 55666666666667777777777777766653 2222221
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 008925 68 NAMINACSESGNVDEAMKIFQKMKDSGCKPTTS-TYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWC 146 (548)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (548)
..+...+...|++++|++.|+++.+.. +|+.. ............|+.++|++.++++.+.. |.+...+..+...+.
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLF 192 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 222334566677777777777766542 22321 11111111223466667777776666542 344555666666666
Q ss_pred hCCCHHHHHHHHHHHHHCCC----------------C----------------CCHHH---------------------H
Q 008925 147 SKNSIEEAWNVVYKMVASGI----------------Q----------------PDAVT---------------------Y 173 (548)
Q Consensus 147 ~~g~~~~a~~~~~~~~~~~~----------------~----------------~~~~~---------------------~ 173 (548)
..|+.++|+..++++.+... . |+... .
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 66676666666666543210 0 00000 0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHH---------
Q 008925 174 NTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHP-NLVVF--------- 243 (548)
Q Consensus 174 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~--------- 243 (548)
......+...|++++|+..|++.++..+. +..++..+..++.+.|++++|+..|+++.+..... ....|
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 01133445566777777777766665332 55666666677777777777777777766543111 11111
Q ss_pred ---HHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH-----
Q 008925 244 ---NSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSI----- 315 (548)
Q Consensus 244 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 315 (548)
......+...|++++|...++++.+..+ .+...+..+..++...|++++|++.|+++++.. +.+...+..
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 1123345566677777777776666542 244555566666677777777777777666553 233333322
Q ss_pred -------------------------------------HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 008925 316 -------------------------------------LAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA 358 (548)
Q Consensus 316 -------------------------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 358 (548)
+...+...|++++|+..|+++++.. +-+...+..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 2334455677777777777777653 12344566677777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----------------------------
Q 008925 359 VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK----------------------------- 409 (548)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------------- 409 (548)
|++++|...++++++.. +.+...+..+...+...|+.++|+..++.+...
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 77777777777777643 334444333333334444444444443332100
Q ss_pred ----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC------------CcchhHHHHHHHhh-ccc
Q 008925 410 ----------GVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP------------NKKDEIAVESIHRK-QNL 466 (548)
Q Consensus 410 ----------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~-~~~ 466 (548)
..+++...+..++..+.+.|++++|+..++++.+.+|..+ ......+...+..+ ...
T Consensus 588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 0123344556677777788888888888888877666544 11222222333332 233
Q ss_pred cccccccccccccccccCCCChhhhhhhhhhcc
Q 008925 467 SASNSTFLQIPGVVSSEHNGSSAAKIRSQIVLR 499 (548)
Q Consensus 467 ~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~ 499 (548)
|.+...+..++.++...|++++|.++.+++...
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 345555666777787888888888877777654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-25 Score=201.42 Aligned_cols=406 Identities=12% Similarity=0.090 Sum_probs=339.7
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEA 83 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 83 (548)
+.+..+.+.....-...++..+. -..+|..+...+-..|++++|+.+++.+.+.. +..+..|..+..++...|+.+.|
T Consensus 92 ~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a 169 (966)
T KOG4626|consen 92 FFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELA 169 (966)
T ss_pred hhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCccc
Confidence 34445555555555555554333 55789999999999999999999999999863 33577999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008925 84 MKIFQKMKDSGCKPTTST-YNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMV 162 (548)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 162 (548)
.+.|.+.++. .|+... ...+...+...|++++|...|.+..... +--...|..|...+-.+|+...|++.|++.+
T Consensus 170 ~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 170 VQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred HHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 9999999986 465544 3456666677899999999998887642 2335789999999999999999999999999
Q ss_pred HCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 008925 163 ASGIQPD-AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLV 241 (548)
Q Consensus 163 ~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 241 (548)
+.. |+ ...|..|...|...+.+++|...|.......+. ...++..+...|...|+.+.|+..+++.++.. |.=+.
T Consensus 246 kld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~ 321 (966)
T KOG4626|consen 246 KLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPD 321 (966)
T ss_pred cCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchH
Confidence 874 44 788999999999999999999999988776433 57778888889999999999999999999864 33368
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 242 VFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYV 321 (548)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (548)
.|+.+..++-..|+..+|...+.......+. ...+.+.|..++...|.++.|..+|....+.. +.-....+.|...|-
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYK 399 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHH
Confidence 9999999999999999999999999987533 46778899999999999999999999999873 334568899999999
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 322 RAGEPQKAESILTSMRKYGVHPNV-VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAE 400 (548)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (548)
++|++++|+..++++++ +.|+. .+|+.++..|-..|+.+.|++.+.+++..+ |.-....+.|...|-..|+..+|+
T Consensus 400 qqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred hcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHH
Confidence 99999999999999998 56775 489999999999999999999999999864 334578999999999999999999
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 008925 401 ELLQVMEEKGVRPKKS-TIQLVADSWR 426 (548)
Q Consensus 401 ~~~~~~~~~~~~p~~~-~~~~l~~~~~ 426 (548)
.-+++.++ ++||.. .+..++.++.
T Consensus 477 ~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 477 QSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 99999987 567754 6666666554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-22 Score=200.53 Aligned_cols=259 Identities=12% Similarity=0.049 Sum_probs=198.7
Q ss_pred cCCHHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHH
Q 008925 183 YGETYRAEQMLFEMQNNQ-V-RPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVD 260 (548)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 260 (548)
.+.+++|.+.|+...+.+ . +.....+..+...+...|++++|+..|++.++.. +.....|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 467888999998888754 1 2245667778888888999999999999988754 344668888888888899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 008925 261 KALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYG 340 (548)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 340 (548)
..++.+.+..+ .+...+..+...+...|++++|...|++.++.. +.+...+..+..++.+.|++++|+..|++.++..
T Consensus 386 ~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 386 EDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99998887653 357788888888899999999999999988875 5567778888888899999999999999888752
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-----H-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 008925 341 VHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL-----K-TYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK 414 (548)
Q Consensus 341 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 414 (548)
+.+...++.++..+...|++++|++.|+++++..-..+. . .+...+..+...|++++|..++++.++. .|+
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~ 540 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPE 540 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 334667888888899999999999999998875311111 1 1222223344468899999999988774 354
Q ss_pred HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 415 KS-TIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 415 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
.. .+..++.++.+.|++++|+++++++.+..+.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 43 6778889999999999999999998866543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-21 Score=197.12 Aligned_cols=256 Identities=12% Similarity=0.002 Sum_probs=197.6
Q ss_pred CCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008925 149 NSIEEAWNVVYKMVASG--IQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMR 226 (548)
Q Consensus 149 g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 226 (548)
+++++|.+.|++.++.+ .+.....+..+...+...|++++|+..+++.++..+. +...+..+..++...|++++|+.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 45778888888888764 1234566788888888899999999999988876432 46677788888888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 008925 227 FLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI 306 (548)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (548)
.|+++++.. +.+...|..+...+...|++++|...++...+..+ .+...+..+..++.+.|++++|+..++++++..
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 999888764 55678888888889999999999999998888753 356677778888889999999999999888764
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 008925 307 EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVV------MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL 380 (548)
Q Consensus 307 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (548)
+.+...++.++.++...|++++|+..|++........+.. .++..+..+...|++++|..+++++++.. +.+.
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~ 542 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECD 542 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcH
Confidence 5567788888889999999999999999888753211111 12222233444688999999999988765 4455
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 381 KTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
..+..++..+...|++++|+.+|++..+.
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 67888889999999999999999888764
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-21 Score=201.50 Aligned_cols=476 Identities=13% Similarity=0.042 Sum_probs=299.7
Q ss_pred cccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 5 VGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAM 84 (548)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 84 (548)
...|++++|+..|+.+++..+. +..++..|+..+...|++++|+..+++..+. .|+...+..++..+ +++++|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHH
Confidence 3459999999999999998765 5788999999999999999999999999986 34433333333222 8889999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHH--------HhccCChHHHHHHHHHhhhCCCCCCCHHHHHHH-HHHHHhCCCHHHHH
Q 008925 85 KIFQKMKDSGCKPTTSTYNTLIKG--------YGNVGKPEESLKLLQLMSQDKNVKPNDRTYNIL-VRAWCSKNSIEEAW 155 (548)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~ 155 (548)
.+++++.... +-+..++..+... |.+.++..++++ .... ...|+....... ...|...+++++|+
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~-~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATF-AASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----Hhhh-CCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 9999998763 2334555555444 544433333333 2111 122334333333 67777777777777
Q ss_pred HHHHHHHHCCC------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC
Q 008925 156 NVVYKMVASGI------------------------------QPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR-PN 204 (548)
Q Consensus 156 ~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~ 204 (548)
+.+.++.+.+. ..+...+..++..|.+.|+.++|.++++++...... |.
T Consensus 203 ~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 203 TLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 77777766641 123333445555566666666666666665332111 11
Q ss_pred HHHH------------------------------HHHHHH----------------------------------------
Q 008925 205 ERTC------------------------------GIIVSG---------------------------------------- 214 (548)
Q Consensus 205 ~~~~------------------------------~~l~~~---------------------------------------- 214 (548)
..++ ..++..
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 362 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL 362 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence 0000 000111
Q ss_pred -----------------------HHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCC---hhhHHHH----
Q 008925 215 -----------------------YCKEGNMEDAMRFLYRMKELE--VHPNLVVFNSLIKGFLDIKD---SDGVDKA---- 262 (548)
Q Consensus 215 -----------------------~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~---~~~a~~~---- 262 (548)
..+.|+.++|.++|++..... ...+......++..|...+. ...+..+
T Consensus 363 ~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 442 (987)
T PRK09782 363 RLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL 442 (987)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence 122334444444444443310 01122233344455544433 1112111
Q ss_pred ------------------HHHHHHc-CC-CC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 263 ------------------LTLMEEF-GV-KP--DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGY 320 (548)
Q Consensus 263 ------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (548)
....... +. ++ +...+..+..++.. ++.++|...+.+.... .|+......+...+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al 519 (987)
T PRK09782 443 PLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQA 519 (987)
T ss_pred ccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHH
Confidence 1111111 11 23 56677777777766 7888899888888766 35554444555566
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 321 VRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAE 400 (548)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (548)
...|++++|...|+++... +|+...+..++..+.+.|+.++|..+++++++.. +++...+..+...+...|++++|.
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 7889999999999887664 4555566677778888899999999999988764 444444445555556679999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC------------cchhHHHHHHHh-hcccc
Q 008925 401 ELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPN------------KKDEIAVESIHR-KQNLS 467 (548)
Q Consensus 401 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~-~~~~~ 467 (548)
..+++.++. .|+...+..++.++.+.|++++|+..++++.+.+|..+. ...+.+...+.+ +...|
T Consensus 597 ~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 597 NDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999988874 567778888888899999999999999999888877651 122333333333 44566
Q ss_pred ccccccccccccccccCCCChhhhhhhhhhccc
Q 008925 468 ASNSTFLQIPGVVSSEHNGSSAAKIRSQIVLRS 500 (548)
Q Consensus 468 ~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~ 500 (548)
.++..+..+|.+|...|++++|+...++.+...
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 777888889999999999999999888887666
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-21 Score=192.77 Aligned_cols=360 Identities=7% Similarity=0.028 Sum_probs=275.1
Q ss_pred HHccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChH
Q 008925 39 LTRQKRFKSILSLISKVEKDG--MKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPE 116 (548)
Q Consensus 39 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 116 (548)
+.++.+++..--.|+...+.- -..+..-...++..+.+.|++++|+.+++..+... +-+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence 445667776655555543220 01122334455667788999999999999988763 334566667777778899999
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008925 117 ESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEM 196 (548)
Q Consensus 117 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 196 (548)
+|+..++++.... |.+...+..+...+...|++++|+..++++.+.. +.+...+..++..+...|++++|...++.+
T Consensus 94 ~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 94 AVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 9999999998753 5566788888889999999999999999998864 445778888899999999999999999888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHH
Q 008925 197 QNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVV 276 (548)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 276 (548)
....+. +...+..+ ..+...|++++|...++.+......++...+..++..+...|++++|...++.+.+..+ .+..
T Consensus 171 ~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~ 247 (656)
T PRK15174 171 AQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAA 247 (656)
T ss_pred HHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHH
Confidence 766443 33333333 34778899999999999987764334445555667788889999999999999888753 3577
Q ss_pred HHHHHHHHHHhCCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008925 277 TFSTIMDAWSSAGLMGK----CQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVI 352 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 352 (548)
.+..+..++...|++++ |...++++++.. |.+..++..++..+...|++++|...++++.... +.+...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 78888889999999885 788999998875 5667788899999999999999999999988864 22455677788
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 353 SGWCNAVKMQRAMSIYEKMCEIGINPNL-KTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
.++...|++++|+..|+++.+.. |+. ..+..+..++...|++++|...|+++.+.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88999999999999999998763 443 44445677888999999999999998864
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-20 Score=189.20 Aligned_cols=391 Identities=11% Similarity=0.038 Sum_probs=297.4
Q ss_pred cccccCChhhHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEG--HRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV 80 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 80 (548)
++.++.+++.---+|....+.- ...+..-...++..+.+.|+++.|+.+++...... +.+...+..++.++...|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCH
Confidence 3556666766666666554321 11122334556777888999999999999998873 44566677777888889999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008925 81 DEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYK 160 (548)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 160 (548)
++|+..|+++.... +.+...+..+...+...|++++|+..++++... .+.+...+..++..+...|++++|...++.
T Consensus 93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 99999999998863 446778888999999999999999999999875 245677888899999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008925 161 MVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240 (548)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 240 (548)
+.... +.+...+..+ ..+...|++++|...++.+.+....++......++..+.+.|++++|+..++++.... +.+.
T Consensus 170 ~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~ 246 (656)
T PRK15174 170 QAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGA 246 (656)
T ss_pred HHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 87764 2333444333 3478899999999999998876544455555666778889999999999999998865 5567
Q ss_pred HHHHHHHHHHHcCCChhh----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 008925 241 VVFNSLIKGFLDIKDSDG----VDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSIL 316 (548)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (548)
..+..+...+...|++++ |...++.+.+..+ .+...+..+...+...|++++|...++++++.. +.+...+..+
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~L 324 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 888889999999999986 7889998888753 367788899999999999999999999999875 5567788889
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC--HH----HHHHHHHH
Q 008925 317 AKGYVRAGEPQKAESILTSMRKYGVHPNVV-MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPN--LK----TYETLLWG 389 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~----~~~~l~~~ 389 (548)
..++.+.|++++|...++++... .|+.. .+..+..++...|+.++|...|+++++.. |+ .. ....+-.+
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~--P~~~~~~~~ea~~~~~~~ 400 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR--ASHLPQSFEEGLLALDGQ 400 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--hhhchhhHHHHHHHHHHH
Confidence 99999999999999999999875 35543 34456778889999999999999998753 22 12 23333444
Q ss_pred HHhcCChHHHHHHHHHH
Q 008925 390 YGEAKQPWRAEELLQVM 406 (548)
Q Consensus 390 ~~~~g~~~~A~~~~~~~ 406 (548)
+...+...+....+.+.
T Consensus 401 ~~~~~~~~~~~~W~~~~ 417 (656)
T PRK15174 401 ISAVNLPPERLDWAWEV 417 (656)
T ss_pred HHhcCCccchhhHHHHH
Confidence 44455554443444444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-22 Score=190.35 Aligned_cols=296 Identities=13% Similarity=0.121 Sum_probs=148.2
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHhCCC
Q 008925 73 ACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPN--DRTYNILVRAWCSKNS 150 (548)
Q Consensus 73 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 150 (548)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+.......+. ...+..++..+...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4456666677777777766653 234456666666666667777777666666543211111 1345556666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 008925 151 IEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNE----RTCGIIVSGYCKEGNMEDAMR 226 (548)
Q Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~ 226 (548)
+++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 666666666666542 334555666666666666666666666666554332211 123334445555556666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 008925 227 FLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI 306 (548)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (548)
.|+++.+.. +.+...+..++..+...|++++|.+.++++.+.++.....++..++.+|...|++++|...++++.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 655555432 22233444444444555555555555554444322211233344444444444444444444444443
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc---cCChHHHHHHHHHHHHcC
Q 008925 307 EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN---AVKMQRAMSIYEKMCEIG 375 (548)
Q Consensus 307 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~ 375 (548)
.|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.+++++.+.+
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 233333344444444444444444444444432 2444444444433332 234444444444444433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-20 Score=189.08 Aligned_cols=408 Identities=10% Similarity=0.015 Sum_probs=286.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIK 107 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 107 (548)
+.....-.+.+....|+.++|++++.++.... +.+...+..+...+...|++++|..+|++.++.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44445556667777888888888888887632 4456668888888888888888888888887752 345667778888
Q ss_pred HHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 008925 108 GYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETY 187 (548)
Q Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 187 (548)
++...|++++|+..++++... .+.+.. +..+..++...|+.++|+..++++.+.. +.+...+..++.++...+..+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 888888888888888888765 244555 7778888888888888888888888874 345566666777788888888
Q ss_pred HHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCHH-HH----HHHH
Q 008925 188 RAEQMLFEMQNNQVRPNE------RTCGIIVSGYC-----KEGNM---EDAMRFLYRMKEL-EVHPNLV-VF----NSLI 247 (548)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~l~ 247 (548)
+|++.++.+.. .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+ ...+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 88888876553 1221 01111222221 12234 6778888887753 1122221 11 1113
Q ss_pred HHHHcCCChhhHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHH
Q 008925 248 KGFLDIKDSDGVDKALTLMEEFGVK-PDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPD----IHVFSILAKGYVR 322 (548)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 322 (548)
..+...+++++|+..|+.+.+.+.+ |+. ....+..++...|++++|+..|+++.+.. +.+ ......+..++..
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHh
Confidence 3445668888999999888876532 322 22235678888899999999998887653 111 3455666777888
Q ss_pred cCCHhHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 323 AGEPQKAESILTSMRKYGV-----------HPN---VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLW 388 (548)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 388 (548)
.|++++|..+++.+..... .|+ ...+..++..+...|+.++|+++++++.... |.+...+..++.
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 8999999999888876421 122 1244566777888899999999999988764 667788888888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 389 GYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
.+...|++++|+..++++++. .|+ ...+...+..+...|++++|+.+++++.+..|..+
T Consensus 402 l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 898999999999999988874 465 44666777788888999999999999887776655
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-21 Score=186.98 Aligned_cols=302 Identities=14% Similarity=0.109 Sum_probs=167.1
Q ss_pred HHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 008925 107 KGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD---AVTYNTLARAYAQY 183 (548)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 183 (548)
..+...|++++|+..|+++.+.. +.+..++..++..+...|++++|..+++.+...+..++ ..++..++..|...
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34456677777777777776542 33455666677777777777777777777665421111 23455666666677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCChhhH
Q 008925 184 GETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPN----LVVFNSLIKGFLDIKDSDGV 259 (548)
Q Consensus 184 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 259 (548)
|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..++..+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 77777777777666542 22455666666666667777777777666665432111 11233444555555666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 008925 260 DKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKY 339 (548)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (548)
...++++.+..+ .+...+..++..+...|++++|..+++++.+.+......+++.++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666665555431 2334445555555556666666666665554421111234455555555556666666665555553
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHH
Q 008925 340 GVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE---AKQPWRAEELLQVMEEKGVRPKKS 416 (548)
Q Consensus 340 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 416 (548)
.|+...+..++..+.+.|++++|..+++++++. .|+..++..++..+.. .|+.++++..+++|.+.++.|++.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 244444455555555556666666666555553 3555555555544442 335555555555555544444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-19 Score=186.81 Aligned_cols=409 Identities=12% Similarity=0.066 Sum_probs=312.6
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
+..-.|+.++|+++|..+.... +.+...+..++..+...|++++|.+++++.++.. |.+...+..+...+...|++++
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 4567899999999999998743 3355678999999999999999999999998863 5567778888899999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMV 162 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 162 (548)
|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.... |.+...+..+..++...+..++|++.+++..
T Consensus 102 A~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 102 ALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 999999998873 44566 8889999999999999999999998852 4566677778888889999999999998765
Q ss_pred HCCCCCCH------HHHHHHHHHHHh-----cCCH---HHHHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHhcCCHH
Q 008925 163 ASGIQPDA------VTYNTLARAYAQ-----YGET---YRAEQMLFEMQNN-QVRPNER-TC----GIIVSGYCKEGNME 222 (548)
Q Consensus 163 ~~~~~~~~------~~~~~l~~~~~~-----~g~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~ 222 (548)
. .|+. .....+++.... .+++ ++|++.++.+.+. ...|+.. .+ ...+..+...|+++
T Consensus 178 ~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 178 L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 4 2221 112222333221 2234 6788888888754 1222221 11 11133456779999
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCCChhHHHHHH
Q 008925 223 DAMRFLYRMKELEVH-PNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKP---DVVTFSTIMDAWSSAGLMGKCQEIF 298 (548)
Q Consensus 223 ~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (548)
+|+..|+++.+.+.+ |+ .....+...|...|++++|...++.+.+..+.. .......+..++...|++++|..++
T Consensus 255 eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999886522 22 222335778999999999999999987754221 1345566777889999999999999
Q ss_pred HHHHHcCC-----------CCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 008925 299 DDMVKAGI-----------EPD---IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRA 364 (548)
Q Consensus 299 ~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 364 (548)
+.+..... .|+ ...+..++..+...|++++|+.+++++.... +.+...+..++..+...|++++|
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 99987631 122 2356677889999999999999999998863 44567889999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008925 365 MSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSW 425 (548)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 425 (548)
++.++++++.. |.+...+..++..+...|++++|...++++++. .|+......+-..+
T Consensus 413 ~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 413 ENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999975 556778888888999999999999999999984 67777555544433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.9e-19 Score=177.13 Aligned_cols=435 Identities=12% Similarity=0.030 Sum_probs=325.1
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEA 83 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 83 (548)
..++|+++.|++.|+++++..+.-....+ .++..+...|+.++|+..+++.... .+........+...+...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 56899999999999999987544212334 7888888889999999999999832 233344555556788899999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008925 84 MKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVA 163 (548)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 163 (548)
+++|+++.+.. +.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999874 345677788889999999999999999999765 56666665555555556677679999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH------HHHHHHH---H--hcCC---HHHHHHHHH
Q 008925 164 SGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTC------GIIVSGY---C--KEGN---MEDAMRFLY 229 (548)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~g~---~~~A~~~~~ 229 (548)
.. |.+...+..+.....+.|-...|.++.++-.+. +.+....+ ...+..- . ...+ .+.|+.-++
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 85 556778888899999999999998877653321 11111100 0111100 0 1122 344555555
Q ss_pred HHHhCC--CCCCHH----HHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 008925 230 RMKELE--VHPNLV----VFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVK 303 (548)
Q Consensus 230 ~~~~~~--~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (548)
.+...- .|+... ...-.+.++...+++.++++.++.+...+.+....+-..+.++|...+++++|..+++.+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 555421 122212 22234567788899999999999999887665567888999999999999999999999976
Q ss_pred cC-----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-------------CCCHH-HHHHHHHHHhccCChHHH
Q 008925 304 AG-----IEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGV-------------HPNVV-MFTTVISGWCNAVKMQRA 364 (548)
Q Consensus 304 ~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~p~~~-~~~~l~~~~~~~g~~~~A 364 (548)
.. .+++......|.-+|...+++++|..+++.+.+... .||-. .+..++..+...|+..+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 43 123444467889999999999999999999987321 12222 334456778889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 365 MSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
++.++++.... |-|......+...+...|.+.+|...++.+... .|+.. +....+.+....|++++|..+.++..+
T Consensus 436 e~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 436 QKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999998876 789999999999999999999999999777653 56644 677788899999999999999999988
Q ss_pred ccCCCC
Q 008925 444 DRQSMP 449 (548)
Q Consensus 444 ~~~~~~ 449 (548)
..|..+
T Consensus 513 ~~Pe~~ 518 (822)
T PRK14574 513 RSPEDI 518 (822)
T ss_pred hCCCch
Confidence 877665
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-18 Score=179.85 Aligned_cols=235 Identities=11% Similarity=0.066 Sum_probs=155.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 204 NERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMD 283 (548)
Q Consensus 204 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (548)
+...+..+..++.. +++++|+..+.+..... |+......+...+...|++++|...++.+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 34455555555554 66667777666665542 44433333444445777777777777776554 233334555666
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 008925 284 AWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQR 363 (548)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 363 (548)
++...|++++|...++.+++.+ +++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHH
Confidence 6777777777777777777664 333334444444444557788888888777764 4566677777777777888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 364 AMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
|+..|+++++.. |.+...+..+..++...|++++|+..+++..+. .|+ ...+..++.++...|++++|+..++++.
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888888877765 556667777777777778888888888777764 343 4467777777788888888888888777
Q ss_pred hccCCCC
Q 008925 443 EDRQSMP 449 (548)
Q Consensus 443 ~~~~~~~ 449 (548)
+..|...
T Consensus 705 ~l~P~~a 711 (987)
T PRK09782 705 DDIDNQA 711 (987)
T ss_pred hcCCCCc
Confidence 6665543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-19 Score=174.45 Aligned_cols=437 Identities=13% Similarity=0.079 Sum_probs=304.5
Q ss_pred ccccCChhhHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRP--TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVD 81 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 81 (548)
+.-.|+++.+..+...+....... -..+|..+++++...|++++|...|.+..+.....-...+..|...|++.|+++
T Consensus 280 fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle 359 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLE 359 (1018)
T ss_pred HhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHH
Confidence 345677777777777776653221 124577777777777777777777777766531111334556677777777777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC----ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 008925 82 EAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVG----KPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNV 157 (548)
Q Consensus 82 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 157 (548)
.+...|+...... +.+..+...|...|...+ ..++|..++.+.... .+.|...|..+...+....-+.. +.+
T Consensus 360 ~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d~~~s-L~~ 435 (1018)
T KOG2002|consen 360 ESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTDPWAS-LDA 435 (1018)
T ss_pred HHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcChHHH-HHH
Confidence 7777777776652 334556666666666554 456666666666554 35566677777766655444333 666
Q ss_pred HHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHhcCCHHHH
Q 008925 158 VYKMV----ASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNN---QVRPNE------RTCGIIVSGYCKEGNMEDA 224 (548)
Q Consensus 158 ~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A 224 (548)
|..+. ..+.++.+...|.++..+...|++.+|...|+..... ...++. .+-..+..++-..++++.|
T Consensus 436 ~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A 515 (1018)
T KOG2002|consen 436 YGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVA 515 (1018)
T ss_pred HHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHH
Confidence 65543 3444567777888888888888888888888776654 122222 2334455566666788888
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 008925 225 MRFLYRMKELEVHPN-LVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVK 303 (548)
Q Consensus 225 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (548)
.+.|..+... .|+ +..|..++......+...+|...++.....+ ..++..++.+...+.....+..|..-|..+.+
T Consensus 516 ~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 516 EEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred HHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHh
Confidence 8888887764 244 3445455444445567777888888777654 34566677777788888888888887766664
Q ss_pred cC-CCCCHHHHHHHHHHHHH------------cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 008925 304 AG-IEPDIHVFSILAKGYVR------------AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEK 370 (548)
Q Consensus 304 ~~-~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 370 (548)
.- ..+|+.+...|+..|.. .+..++|+++|.++++.. +.|...-|.++-.++..|++.+|..+|.+
T Consensus 593 ~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 593 KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred hhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHH
Confidence 31 23577777777776553 234678999999998864 34677788899999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 371 MCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK-GVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
..+.. ..+..+|..++.+|...|++..|++.|+...+. .-..+..++..|+.++.+.|.+.+|.+.+..+....|..+
T Consensus 672 VrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 672 VREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT 750 (1018)
T ss_pred HHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc
Confidence 99875 346678999999999999999999999998754 3344677999999999999999999999999987776655
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-18 Score=171.29 Aligned_cols=439 Identities=15% Similarity=0.097 Sum_probs=320.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDS--ILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIK 107 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 107 (548)
.+...-+-...+.|+++.|++.|+++.+.. |+. ..+ .++..+...|+.++|+..+++..... +........++.
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ 110 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAAR 110 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHH
Confidence 333444555678999999999999999863 442 334 88888889999999999999998321 223444445577
Q ss_pred HHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 008925 108 GYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETY 187 (548)
Q Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 187 (548)
.+...|++++|+++|+++.+.. |.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 8999999999999999998863 455677778888999999999999999999886 566666655555555567776
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH------HHHHHHH-----HcCCCh
Q 008925 188 RAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVF------NSLIKGF-----LDIKDS 256 (548)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~l~~~~-----~~~~~~ 256 (548)
+|++.++++.+..+. +...+..+..++.+.|-...|.++..+-...- .+....+ ..++..- ....++
T Consensus 187 ~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 187 DALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 799999999998544 77888888899999999999998877644321 1111111 1111100 112334
Q ss_pred hhHHHHHHHH---HHc-CCCCC-H----HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 008925 257 DGVDKALTLM---EEF-GVKPD-V----VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQ 327 (548)
Q Consensus 257 ~~a~~~~~~~---~~~-~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (548)
..+.+.+..+ ... +..|. . ....-.+-++...++..++++.|+.+...+.+....+-..++.+|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 4444444443 331 11132 1 1222345577899999999999999998875556668889999999999999
Q ss_pred HHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-----------CCC--H-HHHHHHHH
Q 008925 328 KAESILTSMRKYG-----VHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGI-----------NPN--L-KTYETLLW 388 (548)
Q Consensus 328 ~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~--~-~~~~~l~~ 388 (548)
+|+.+++.+.... ..++......|..++...+++++|..+++++.+... .|| - ..+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 9999999997642 122333457889999999999999999999997310 122 2 23445677
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhccccc
Q 008925 389 GYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSA 468 (548)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 468 (548)
.+...|+..+|++.++++.... +-|......+++++...|.+.+|++.++.+... .|.
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l---------------------~P~ 482 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL---------------------APR 482 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh---------------------CCc
Confidence 8889999999999999998642 345668889999999999999999999875433 344
Q ss_pred cccccccccccccccCCCChhhhhhhhhhccc
Q 008925 469 SNSTFLQIPGVVSSEHNGSSAAKIRSQIVLRS 500 (548)
Q Consensus 469 ~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~ 500 (548)
+....+.++.++...++|.+|.++.+.+.+..
T Consensus 483 ~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 483 SLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 55666778888888899999988887775555
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-18 Score=168.14 Aligned_cols=405 Identities=13% Similarity=0.122 Sum_probs=262.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMK--PDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT--TSTYN 103 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~ 103 (548)
++++.+.|...+.-.|+++.++.+...+...... .-+..|..+..+|-..|++++|...|.+..+.. ++ ...+-
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~ 346 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLV 346 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcccccc
Confidence 4455566666666666666666666666544211 112245566666666666666666666665542 22 23334
Q ss_pred HHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008925 104 TLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKN----SIEEAWNVVYKMVASGIQPDAVTYNTLARA 179 (548)
Q Consensus 104 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 179 (548)
.+.+.+.+.|+++.+...|+.+... .|.+..+...|+..|...+ ..+.|..++.+..+.- +.|...|..+...
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 4566666666666666666666554 2344455555555555553 3455666666555543 4456666666555
Q ss_pred HHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC------CCHHHHHHH
Q 008925 180 YAQYGETYRAEQMLFEMQ----NNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKEL---EVH------PNLVVFNSL 246 (548)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~------~~~~~~~~l 246 (548)
+.... ...++.+|..+. ..+..+.+...|.+...+...|++.+|...|...... ... +++.+-..+
T Consensus 424 ~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 54433 333355555432 3344456677777777777888888888887777654 111 222234445
Q ss_pred HHHHHcCCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 008925 247 IKGFLDIKDSDGVDKALTLMEEFGVKPD-VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGE 325 (548)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (548)
...+-..++++.|.+.+..+.+.. |. ...|..++......+...+|...+..++..+ ..++.+++.++..+.+...
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 555566677777888888777653 32 3334444433344567778888888887765 6677788888888888888
Q ss_pred HhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhc------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 326 PQKAESILTSMRKYG-VHPNVVMFTTVISGWCN------------AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 326 ~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
+..|.+-|+.+.+.- ..+|+.+..+|+..|.. .+..++|+++|.++++.. |-|...-+.++-.++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 888888777666531 23577777777775542 345788999999998875 6778888889899999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 393 AKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 393 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
.|++.+|..+|.+..+.. .-...+|.+++.+|..+|++..|+++|+....
T Consensus 659 kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred ccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988753 23456888999999999999999999998763
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-17 Score=147.34 Aligned_cols=417 Identities=12% Similarity=0.119 Sum_probs=251.3
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPT----LITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESG 78 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 78 (548)
+++++..+.+|+++|+-++..-+..+ ....+.++..+.+.|.++.|+..|+.+.+. .|+-.+-..|+-++...|
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~ 323 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIG 323 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecC
Confidence 45555666666666666555422111 123444455555666666666666666553 455444444444555556
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHH--------HHHHHHHhcc-----------CChHHHHHHHHHhhhCCCCCCCHH---
Q 008925 79 NVDEAMKIFQKMKDSGCKPTTSTY--------NTLIKGYGNV-----------GKPEESLKLLQLMSQDKNVKPNDR--- 136 (548)
Q Consensus 79 ~~~~A~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~--- 136 (548)
+.++..+.|.+|+.....||..-| ..|+.--.+. .+.++++-.-.++.. .-+.|+-.
T Consensus 324 d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia-pvi~~~fa~g~ 402 (840)
T KOG2003|consen 324 DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA-PVIAPDFAAGC 402 (840)
T ss_pred cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc-cccccchhccc
Confidence 666666666666554334443311 1111111110 011111111111111 00111110
Q ss_pred HH------------------HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHH
Q 008925 137 TY------------------NILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQ--YGETYRAEQMLFEM 196 (548)
Q Consensus 137 ~~------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~ 196 (548)
.| ..-...+.+.|+++.|+++++-+.+..-..-...-+.|...+.. -.++..|.++-+..
T Consensus 403 dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a 482 (840)
T KOG2003|consen 403 DWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA 482 (840)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence 00 01112345566666666666655543222222222333222222 23455555555544
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHH
Q 008925 197 QNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVV 276 (548)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 276 (548)
+... .-++.....-.......|++++|.+.+++.+..+.. -......+...+-..|+.++|+..|-.+... +..+..
T Consensus 483 ln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~e 559 (840)
T KOG2003|consen 483 LNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAE 559 (840)
T ss_pred hccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHH
Confidence 4321 113333333334445578999999999998875422 2233334445567788999999888776554 234677
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008925 277 TFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWC 356 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 356 (548)
.+..+...|....+..+|++++.+.... ++.|+.+.+.|...|-+.|+-..|.+.+-.--+. ++-+..+...|...|.
T Consensus 560 vl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHH
Confidence 7888888999999999999999888766 4778999999999999999999998877655443 4567788888888899
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008925 357 NAVKMQRAMSIYEKMCEIGINPNLKTYETLLW-GYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGL 430 (548)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 430 (548)
...-+++|+.+|+++.- +.|+..-|..++. ++.+.|++++|.++++...+. ++-+...+..+++.+...|.
T Consensus 638 dtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 98999999999999876 4899999988765 456789999999999998764 56677788888888888874
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-15 Score=138.44 Aligned_cols=417 Identities=12% Similarity=0.053 Sum_probs=244.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHH
Q 008925 59 GMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT--TSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDR 136 (548)
Q Consensus 59 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 136 (548)
|+..+...|..=...|-..|..-.+..+....+..|+... ..+|..-...|.+.+.++-|..+|....+. ++.+..
T Consensus 474 gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~s 551 (913)
T KOG0495|consen 474 GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKS 551 (913)
T ss_pred ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhH
Confidence 3333333343333344444444444444444433333221 234555555555555566666666665553 344445
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008925 137 TYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYC 216 (548)
Q Consensus 137 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 216 (548)
.|......--..|..++...+|++++..- +-....|......+...|+...|..++..+.+..+. +...|..-+..-.
T Consensus 552 lWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~ 629 (913)
T KOG0495|consen 552 LWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEF 629 (913)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhh
Confidence 55555555555566666666666666542 333444555556666667777777776666665444 5566666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 008925 217 KEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQE 296 (548)
Q Consensus 217 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 296 (548)
...+++.|..+|.+.... .|+...|.--+....-.+..++|.++++..++.- +.-...|..+.+.+-+.++.+.|..
T Consensus 630 en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred ccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHH
Confidence 666777777777666653 3555555555555555666667777766666542 2223455566666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 008925 297 IFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGI 376 (548)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 376 (548)
.|..-.+. +|-.+..|..|...--+.|.+-+|..+++.....+ +.+...|...+..=.+.|+.+.|..+..++++. +
T Consensus 707 aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-c 783 (913)
T KOG0495|consen 707 AYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-C 783 (913)
T ss_pred HHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 66655544 23344455666666666667777777777666553 235556666677667777777777777766654 3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHH
Q 008925 377 NPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIA 456 (548)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 456 (548)
|.+...|..-+....+.++-.++...+++. ..|+..+..++..+....+++.|.+.|+++...++
T Consensus 784 p~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~---------- 848 (913)
T KOG0495|consen 784 PSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP---------- 848 (913)
T ss_pred CccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC----------
Confidence 555556666666666655544444444332 34566677778888888888888888888764443
Q ss_pred HHHHHhhccccccccccccccccccccCCCChhhhhhhhhhccc---ccccchhhhhH
Q 008925 457 VESIHRKQNLSASNSTFLQIPGVVSSEHNGSSAAKIRSQIVLRS---DTVWTATKSLF 511 (548)
Q Consensus 457 ~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~---g~~w~~~~~~~ 511 (548)
..+.++.-+-.++...|.-++-.+++.+...-. |..|..+-..+
T Consensus 849 -----------d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 849 -----------DNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDI 895 (913)
T ss_pred -----------ccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhH
Confidence 333334444455666777777778877776555 99998776543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-14 Score=130.60 Aligned_cols=430 Identities=13% Similarity=0.072 Sum_probs=333.1
Q ss_pred ccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 6 GKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMK 85 (548)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 85 (548)
.++++..|..+|+.++.... .+...|...+..-.+......|..+++..... +|.-...|...+..=-..|+...|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 46788999999999998764 47788998999999999999999999999875 33334577777777778999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 008925 86 IFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASG 165 (548)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 165 (548)
+|++-.+. .|+..+|.+.+..-.+...++.|..+|++..- +.|++.+|.-.++.-.+.|....+..+|+.+++.-
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 99999885 79999999999999999999999999999876 57999999999999999999999999999987641
Q ss_pred C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH--------HHHHHhC
Q 008925 166 I--QPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPN-ERTCGIIVSGYCKEGNMEDAMRF--------LYRMKEL 234 (548)
Q Consensus 166 ~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~--------~~~~~~~ 234 (548)
- ..+...+.++...-.++..++.|.-+|+-.++.-+... ...|......--+-|+....... +++.++.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 0 11234455566666677889999999999888643322 33444444333445554333322 4455554
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHH--HHHHHH-----HHH---HhCCChhHHHHHHHHHHHc
Q 008925 235 EVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVV--TFSTIM-----DAW---SSAGLMGKCQEIFDDMVKA 304 (548)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~-----~~~---~~~~~~~~a~~~~~~~~~~ 304 (548)
+ +-|-.+|--.+..-...|+.+...++++..+.. ++|-.. .|...+ -++ ....+.+.+.++|+..++.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3 667788888888888899999999999999876 344321 111111 111 3568999999999999985
Q ss_pred CCCCCHHHHHH----HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 008925 305 GIEPDIHVFSI----LAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL 380 (548)
Q Consensus 305 ~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (548)
+|-...|+.- ......++.++..|.+++..++. .-|...+|...|..=.+.++++.+..+|++.++.+ |-|-
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c 471 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENC 471 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhh
Confidence 3444445443 34445678899999999998875 56888999999999999999999999999999987 6678
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 381 KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
.+|...+..-...|+.+.|..+|+-+++.+..-- ...|...++.-...|.++.|..++++.++..+..
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV 540 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence 8999999888999999999999999987432212 2367777777788999999999999999766554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.2e-16 Score=137.45 Aligned_cols=391 Identities=15% Similarity=0.175 Sum_probs=276.1
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC------------CCCHHHHHHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGM------------KPDSILFNAM 70 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------~~~~~~~~~l 70 (548)
++.+.|+++.|+..|+.+.+. .|+..+-..|+-++...|+-++..+.|.+|..... .|+....+..
T Consensus 285 tfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred eEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 478899999999999999986 47776656666677778999999999999975321 2333333332
Q ss_pred HH-----HHHhcC--ChHHHHHHHHHHHhcCCCCCHH-----H--------H--------HHHHHHHhccCChHHHHHHH
Q 008925 71 IN-----ACSESG--NVDEAMKIFQKMKDSGCKPTTS-----T--------Y--------NTLIKGYGNVGKPEESLKLL 122 (548)
Q Consensus 71 ~~-----~~~~~g--~~~~A~~~~~~~~~~~~~~~~~-----~--------~--------~~l~~~~~~~g~~~~A~~~~ 122 (548)
+. -.-+.+ +.++++-.--+++..-+.|+-. + + ..-..-|.+.|+++.|++++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 21 111111 2223332222222222222211 0 0 11123467889999999999
Q ss_pred HHhhhCCCCCCCHHHHHHHHHH-HH-hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008925 123 QLMSQDKNVKPNDRTYNILVRA-WC-SKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQ 200 (548)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~-~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 200 (548)
+-+.+......+ ..-+.|... |. .-.++..|.++-+..+... .-+......-.......|++++|.+.|++.+...
T Consensus 443 kv~~~kdnk~~s-aaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 443 KVFEKKDNKTAS-AAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHhccchhhH-HHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 888654322222 222233222 22 2347888888887776543 3345555555555667899999999999998763
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHH
Q 008925 201 VRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFST 280 (548)
Q Consensus 201 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (548)
.. -...+..+.-.+-..|+.++|+.+|-++... ...+..+...+...|-...+...|++++.+.... ++.|+..+..
T Consensus 521 as-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilsk 597 (840)
T KOG2003|consen 521 AS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSK 597 (840)
T ss_pred hH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHH
Confidence 22 2233334455677889999999999887653 2356778888889999999999999999888776 4668999999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccC
Q 008925 281 IMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGW-CNAV 359 (548)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g 359 (548)
|...|-+.|+-.+|.+.+-.-.+. ++.+..+...|...|....-+++|+.+|++..- +.|+..-|..++..| .+.|
T Consensus 598 l~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcc
Confidence 999999999999999987766554 478899999999999999999999999998876 579999998777655 5789
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008925 360 KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQV 405 (548)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (548)
++.+|..+|+..... +|.|...+..|++.+...|.. ++.++-++
T Consensus 675 nyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~-d~key~~k 718 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK-DAKEYADK 718 (840)
T ss_pred cHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch-hHHHHHHH
Confidence 999999999999875 588999999999999888853 34444433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-14 Score=139.50 Aligned_cols=434 Identities=13% Similarity=0.125 Sum_probs=288.5
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEA 83 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 83 (548)
+...|++++|..++.++++..+. +...|..|+.+|-++|+.+++...+-.+-... |-|...|..+.....+.|++++|
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 44569999999999999998755 77899999999999999999999877665553 55778999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCC-HH----HHHHHHHHHHhCCCHHHHHHHH
Q 008925 84 MKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPN-DR----TYNILVRAWCSKNSIEEAWNVV 158 (548)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~----~~~~l~~~~~~~g~~~~a~~~~ 158 (548)
.-+|.++++.. +++...+-.-+..|-+.|+...|...|.++.+.. +|. .. .--..++.+...++.+.|++.+
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999975 4566666667788999999999999999998753 222 22 2233456677778889999999
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---------------------------CCHHHHHH
Q 008925 159 YKMVASG-IQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR---------------------------PNERTCGI 210 (548)
Q Consensus 159 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------------------------~~~~~~~~ 210 (548)
+.....+ -..+...++.++..+.+...++.+............. ++..++ .
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-R 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-h
Confidence 8887732 1345567788888888888888888877766552111 111221 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 008925 211 IVSGYCKEGNMEDAMRFLYRMKELE--VHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSA 288 (548)
Q Consensus 211 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 288 (548)
+.-++......+....+........ +..+...+.-+..++.+.|++.+|..++..+......-+...|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 1222333333333333333343333 22344667777788888888888888888777765444566777788888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHhccCC
Q 008925 289 GLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRK--------YGVHPNVVMFTTVISGWCNAVK 360 (548)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~p~~~~~~~l~~~~~~~g~ 360 (548)
|..+.|.+.|..++... |.+..+-..|...+.+.|+.++|.+.++.+.. .+..|+..........+...|+
T Consensus 463 ~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 88888888888887764 55566667777778888888888888777542 1223333333334444555555
Q ss_pred hHHHHHHHHHHHHcC-----C---------------------------------------------CC-----------C
Q 008925 361 MQRAMSIYEKMCEIG-----I---------------------------------------------NP-----------N 379 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~-----~---------------------------------------------~~-----------~ 379 (548)
.++-+.+-..|+... + .+ +
T Consensus 542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls 621 (895)
T KOG2076|consen 542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS 621 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence 554333333332210 0 00 0
Q ss_pred H----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHH---HHH-HHHHHHHHcCCHHHHHHHHHHHHhc
Q 008925 380 L----KTYETLLWGYGEAKQPWRAEELLQVMEEKGVR-PKKS---TIQ-LVADSWRAIGLAREAKRVLKSAEED 444 (548)
Q Consensus 380 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~---~~~-~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (548)
. ..+..++..+.+.+++++|+.+...+.+..+- -+.. .+. ..+.+....+++.+|...++.+...
T Consensus 622 iddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 622 IDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 0 12344556667777777777777777654322 2222 222 2345556777777887777777766
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-14 Score=132.48 Aligned_cols=474 Identities=12% Similarity=0.025 Sum_probs=360.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 008925 15 YIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSG 94 (548)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 94 (548)
++++.+++. ++.++..|... ....+.+.|+-++.+..+. ++.+...|. +|++..-++.|.+++++..+.
T Consensus 367 RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~- 435 (913)
T KOG0495|consen 367 RVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI- 435 (913)
T ss_pred HHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-
Confidence 445555554 22244444433 3344566677777777765 344444443 455666778888888888876
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhh---hCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--
Q 008925 95 CKPTTSTYNTLIKGYGNVGKPEESLKLLQLMS---QDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD-- 169 (548)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 169 (548)
++.+...|.+....--..|..+...+++.+-. +..|+.-+...|..-...|-..|..-.+..+....+..|+...
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 66778888887777778888888888877653 2356677777888888888888888888888888887776533
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 170 AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKG 249 (548)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (548)
..||..-...|.+.+.++-|..+|...++-.+ -+...|......--..|..+.-..+|+++... .+.....|......
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 56788888899999999999999998887633 36667777776666788999999999999875 35667888888888
Q ss_pred HHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 008925 250 FLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKA 329 (548)
Q Consensus 250 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 329 (548)
+-..|+...|..++..+.+..+. +...|..-+........++.|..+|.+.... .|+..+|.--+....-.++.++|
T Consensus 594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence 88999999999999998887644 6678888888888999999999999998875 57788887777777788999999
Q ss_pred HHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 330 ESILTSMRKYGVHPNV-VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 330 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
++++++.++. -|+. ..|..++..+-+.++.+.|...|..-.+. +|.....|..|.+.--+.|.+-+|..++++..-
T Consensus 671 ~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 671 LRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 9999999885 4554 47888999999999999999998887765 466678888888888899999999999999986
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC---C------cchhHHHHHHHhhcccccccccccccccc
Q 008925 409 KGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP---N------KKDEIAVESIHRKQNLSASNSTFLQIPGV 479 (548)
Q Consensus 409 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~------~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 479 (548)
.+ +-+...|...+..-.+.|+.++|..++.++++..|+.- . ..+..-...+-.+.....++-..+..+.+
T Consensus 748 kN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~l 826 (913)
T KOG0495|consen 748 KN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKL 826 (913)
T ss_pred cC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHH
Confidence 54 33455888888999999999999999999998777542 1 11111223444444444466556668888
Q ss_pred ccccCCCChhhhhhhhhhccc---ccccchhh
Q 008925 480 VSSEHNGSSAAKIRSQIVLRS---DTVWTATK 508 (548)
Q Consensus 480 y~~~~~~~~a~~~~~~~~~~~---g~~w~~~~ 508 (548)
+-+..+++.|.+-..+....+ |..|.-+-
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDPDNGDAWAWFY 858 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccchHHHHHH
Confidence 989999999999888887776 88887543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-15 Score=134.16 Aligned_cols=413 Identities=14% Similarity=0.064 Sum_probs=254.6
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCh
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPT-LITYTTLVAALTRQKRFKSILSLISKVEKDGMKPD-SILFNAMINACSESGNV 80 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 80 (548)
-+.++|++++|++.|.++++. .|+ +.-|.....+|...|+|++..+--.+.++. .|+ +..+..-..++-..|++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccH
Confidence 466788888888888888875 455 666778888888888888888877777764 444 44666666777777777
Q ss_pred HHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 008925 81 DEAMKIFQKMKDS-GCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVY 159 (548)
Q Consensus 81 ~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 159 (548)
++|+.-..-..-. |+. +..+--.+=+.+-+.+. .++.+-+.. ....+-|+.....+....+...- . .
T Consensus 200 ~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a~-~ka~e~~k~--nr~p~lPS~~fi~syf~sF~~~~--~------~ 267 (606)
T KOG0547|consen 200 DEALFDVTVLCILEGFQ-NASIEPMAERVLKKQAM-KKAKEKLKE--NRPPVLPSATFIASYFGSFHADP--K------P 267 (606)
T ss_pred HHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHHHH-HHHHHhhcc--cCCCCCCcHHHHHHHHhhccccc--c------c
Confidence 7775432222111 111 11111111111111111 111111110 12223344443333333221100 0 0
Q ss_pred HHHHCCCCCCHHHHHHHHHHH----Hh-cCCHHHHHHHHHHHHhC---CCCCC---------HHHHHHHHHHHHhcCCHH
Q 008925 160 KMVASGIQPDAVTYNTLARAY----AQ-YGETYRAEQMLFEMQNN---QVRPN---------ERTCGIIVSGYCKEGNME 222 (548)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~----~~-~g~~~~a~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~~~g~~~ 222 (548)
.+. .+.......+..++ .. ...+..|.+.+.+-... ....+ ..++...+.-+.-.|+..
T Consensus 268 ~~~----~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 268 LFD----NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred ccc----CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 000 00000111111111 00 01223333322221110 00001 223333334455678889
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 008925 223 DAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMV 302 (548)
Q Consensus 223 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (548)
.|..-|+..++.. +.+...|--+...|....+..+..+.|....+.++. ++.+|..-.....-.+++++|..=|++.+
T Consensus 344 ~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 344 GAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred hhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998865 233334777888899999999999999999888643 66778888888888899999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC-----CC
Q 008925 303 KAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIG-----IN 377 (548)
Q Consensus 303 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~ 377 (548)
... +.+...|-.+..+..+.+.++++...|++.++. ++.-+..|+-....+..++++++|.+.|+.+++.. +.
T Consensus 422 ~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~ 499 (606)
T KOG0547|consen 422 SLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII 499 (606)
T ss_pred hcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence 876 566778888888888899999999999999876 44456788999999999999999999999998752 11
Q ss_pred CCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 378 PNLKTYE--TLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 378 ~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
.+...+. .++..- -.+++..|..++.++.+. .|..+ .+..|+....+.|+.++|+++|+++.
T Consensus 500 v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1222222 222211 248889999999999874 56655 88899999999999999999999864
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-14 Score=126.23 Aligned_cols=367 Identities=12% Similarity=0.043 Sum_probs=261.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHH
Q 008925 60 MKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYN 139 (548)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 139 (548)
...|...+-.....+.+.|..+.|+..|...... .+-.-.+|..|.... .+.+.+..+...+.. ......--
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~l~~~l~~----~~h~M~~~ 231 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSILVVGLPS----DMHWMKKF 231 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHHHHhcCcc----cchHHHHH
Confidence 3445555555556667788888888888887654 233444555554433 223333222221111 01111112
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHh
Q 008925 140 ILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR--PNERTCGIIVSGYCK 217 (548)
Q Consensus 140 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 217 (548)
-+..++....+.+++++-.+.....|++-+...-+....+.....++++|+.+|+++.+..+- .|..+|+.++-. +
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--K 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--H
Confidence 344566667788888888888888887766666666667778888999999999999887421 245666665533 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 008925 218 EGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEI 297 (548)
Q Consensus 218 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 297 (548)
..+- .+.++-+-...-..-.+.|...+.+-|.-.++.++|...|++..+.++. ....|+.+..-|....+...|.+-
T Consensus 310 ~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 2211 1222222111111344567777888888889999999999999998744 567899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 008925 298 FDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGIN 377 (548)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 377 (548)
++.+++.+ |.|-..|-.|+++|.-.+.+.-|+-+|+++.... +.|...|.+|+.+|.+.++.++|++.|.++...| .
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 99999987 7788899999999999999999999999999863 4478899999999999999999999999999887 5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 378 PNLKTYETLLWGYGEAKQPWRAEELLQVMEEK----G-VRPK-KSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
.+...+..|+..|-+.++..+|..+|++-++. | +.|. .....-++.-+.+.+++++|..+.....
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 56788999999999999999999999887642 2 2231 2233345677788999999988877754
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-14 Score=136.05 Aligned_cols=388 Identities=12% Similarity=0.121 Sum_probs=231.1
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHH
Q 008925 39 LTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEES 118 (548)
Q Consensus 39 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 118 (548)
+...|++++|..++.++++.. +.....|..|...|-..|+.+++...+-.+-... +.|...|..+.....+.|.++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 334466666666666666553 4445566666666666666666665555444332 33445566666666666666666
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHH
Q 008925 119 LKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNT----LARAYAQYGETYRAEQMLF 194 (548)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~ 194 (548)
.-.|.+.++.. |++...+---...|-+.|+...|..-|.++.....+.|..-... .+..+...++-+.|.+.++
T Consensus 227 ~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 227 RYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66666665542 34444444445555666666666666666655532222222222 2333444455555555555
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH--cCC
Q 008925 195 EMQNN-QVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEE--FGV 271 (548)
Q Consensus 195 ~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~ 271 (548)
..... +-..+...++.++..+.+...++.|.............+|..-|-+-=. ++ . -..-+.. .+.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~-----~~-~----~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER-----RR-E----EPNALCEVGKEL 374 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh-----cc-c----cccccccCCCCC
Confidence 54431 1222344455555666666666666555555544333333322211000 00 0 0000000 012
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHH
Q 008925 272 KPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIE--PDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFT 349 (548)
Q Consensus 272 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 349 (548)
.++... ..+.-++.+....+....+.......++. .+...|.-+..+|...|.+.+|+.+|..+......-+...|-
T Consensus 375 s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 375 SYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred Cccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 222222 12333455666666666666666666533 345678889999999999999999999998865445677899
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH--------HCCCCCCHHHHHHH
Q 008925 350 TVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME--------EKGVRPKKSTIQLV 421 (548)
Q Consensus 350 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~~l 421 (548)
.++.+|...|.+++|++.|++++... |.+...-..|...+.+.|+.++|.+.++.+. ..+..|+..+....
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHH
Confidence 99999999999999999999999875 5666777888889999999999999998864 22344666677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 008925 422 ADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~ 442 (548)
.+.+...|+.++=+.....+.
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 888899999888666555554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-13 Score=119.98 Aligned_cols=305 Identities=18% Similarity=0.239 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChHHH-HHHHHHHHhcC------------
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACS--ESGNVDEA-MKIFQKMKDSG------------ 94 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A-~~~~~~~~~~~------------ 94 (548)
.+=+.|+.. ..+|....+.-+|+.|...|++.+...-..|+..-+ ...++.-| .+.|-.|...|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 445666654 457888889999999998888877766665554322 22222211 11222222221
Q ss_pred -------CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 008925 95 -------CKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQ 167 (548)
Q Consensus 95 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 167 (548)
.+.+..++..+|.++++.-..+.|.+++++..... .+.+..+||.++.+-.-. ...+++.+|....+.
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 12344555566666666555666666665554332 344555555555543222 124555555555556
Q ss_pred CCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhC----C---
Q 008925 168 PDAVTYNTLARAYAQYGETYR----AEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMED-AMRFLYRMKEL----E--- 235 (548)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~----~--- 235 (548)
||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..++..+++.++..+ |..++.++... .
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 666666666666666665543 33444555555666666666666655555555433 33333333221 1
Q ss_pred -CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 008925 236 -VHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFG----VKPD---VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIE 307 (548)
Q Consensus 236 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (548)
.+.+..-|...+..|....+.+-|.++...+.... +.|+ ..-|..+..+.+.....+.-...|+.|+-.-+-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 11223344444555555555555555544433221 1111 122333444445555555555555555544444
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 008925 308 PDIHVFSILAKGYVRAGEPQKAESILTSMRKYG 340 (548)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 340 (548)
|+..+...++++....+.++-.-+++..+...|
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 555555555555555555555555555554443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.7e-14 Score=124.77 Aligned_cols=368 Identities=11% Similarity=0.018 Sum_probs=264.1
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH--
Q 008925 95 CKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVT-- 172 (548)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-- 172 (548)
...|...+-.....+.+.|....|++.|...... .|..-..|..|.... .+.+.+ ..+. .+.+.|...
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~li---t~~e~~----~~l~-~~l~~~~h~M~ 229 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELI---TDIEIL----SILV-VGLPSDMHWMK 229 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhh---chHHHH----HHHH-hcCcccchHHH
Confidence 3445555555556667788888899888887653 233334444443332 222222 2222 122322211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 008925 173 YNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEV--HPNLVVFNSLIKGF 250 (548)
Q Consensus 173 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~ 250 (548)
=-.+..++......+++.+-.+.....|++-+...-+....+.....|+++|+.+|+++.+.+. -.|..+|+.++-.-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 1234566777778888988888888888887777777777788889999999999999988641 12556777766433
Q ss_pred HcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 008925 251 LDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAE 330 (548)
Q Consensus 251 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 330 (548)
... .....+.+-...-.+--+.|...+..-|+-.++.++|..+|+++++.+ +....+|+.++.-|...++...|+
T Consensus 310 ~~~----skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 310 NDK----SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhh----HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHH
Confidence 221 122222222211123345677788888999999999999999999997 667789999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008925 331 SILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKG 410 (548)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 410 (548)
+.++.+.+.+ +.|-..|-.|+.+|.-.+-..-|+-+|+++.+.. |.|...|.+|+.+|.+.++.++|++.|++....|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9999999864 4478899999999999999999999999999975 7789999999999999999999999999999865
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhccccccccccccccccccccCCCChhh
Q 008925 411 VRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEHNGSSAA 490 (548)
Q Consensus 411 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~ 490 (548)
..+...+..+++++-+.++.++|..++++-.+.. ..-+...+... ....-|++.+.+.++|++|.
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~-------------ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETI-------------KARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHH-------------HHHHHHHHHHHhhcchHHHH
Confidence 3466789999999999999999999999865422 11111111111 11222777788888888888
Q ss_pred hhhh
Q 008925 491 KIRS 494 (548)
Q Consensus 491 ~~~~ 494 (548)
.---
T Consensus 528 ~Ya~ 531 (559)
T KOG1155|consen 528 YYAT 531 (559)
T ss_pred HHHH
Confidence 7433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-13 Score=118.25 Aligned_cols=379 Identities=17% Similarity=0.171 Sum_probs=276.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh--ccCCh-------------------------HH
Q 008925 65 ILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYG--NVGKP-------------------------EE 117 (548)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~-------------------------~~ 117 (548)
.+=+.|+. ....|.+..+.-+|+.|.+.|++.+...-..|.+.-+ ...++ +-
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 34555554 4577899999999999999998888776555554322 21111 11
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 118 SLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQ 197 (548)
Q Consensus 118 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 197 (548)
|.-+|+. .+.+..++..++.+.|+--..+.|.+++++......+.+..+||.+|.+-.-. ...+++.+|.
T Consensus 196 AdL~~E~------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMi 265 (625)
T KOG4422|consen 196 ADLLFET------LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMI 265 (625)
T ss_pred HHHHHhh------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHH
Confidence 2222222 24567899999999999999999999999998887889999999998765433 2378899999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhh-HHHHHHHHHHc---
Q 008925 198 NNQVRPNERTCGIIVSGYCKEGNMEDA----MRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDG-VDKALTLMEEF--- 269 (548)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~--- 269 (548)
.....||..|+|+++.+..+.|+++.| .+++.+|++.|+.|+..+|..++..+.+.++..+ +..++..+...
T Consensus 266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 266 SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 999999999999999999999988764 5678889999999999999999999998888755 33334443321
Q ss_pred -CCC----CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 008925 270 -GVK----PDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKA----GIEPDI---HVFSILAKGYVRAGEPQKAESILTSMR 337 (548)
Q Consensus 270 -~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 337 (548)
.++ .|...|...+..|.+..+.+.|.++..-+... -++|+. .-|..+..+.+.....+.-...++.|.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 122 24566777888899999999999887766532 123442 235667777888888999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-Ch--H---H--------HHHHH
Q 008925 338 KYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK-QP--W---R--------AEELL 403 (548)
Q Consensus 338 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--~---~--------A~~~~ 403 (548)
-.-.-|+..+...++++....|.++-.-++|..+...|..-+......++..+++.. .+ . + |..++
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~ 505 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIK 505 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 766678888888899999999999999999999998875555555555555555543 11 0 0 11111
Q ss_pred -------HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHH
Q 008925 404 -------QVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIA 456 (548)
Q Consensus 404 -------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 456 (548)
.++.+ ..-....+.+++-++.+.|..++|.+++.-........|+-+--.+
T Consensus 506 e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnA 563 (625)
T KOG4422|consen 506 EAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNA 563 (625)
T ss_pred HHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhh
Confidence 12222 2344567888888999999999999999988766666665544443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-14 Score=137.34 Aligned_cols=290 Identities=13% Similarity=0.032 Sum_probs=197.5
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008925 146 CSKNSIEEAWNVVYKMVASGIQPD-AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDA 224 (548)
Q Consensus 146 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 224 (548)
...|+++.|.+.+.+..+.. |+ ...+-....+....|+++.|.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35677777777777766652 33 3344445566777788888888887776543322222333346667777888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HhCCChhHHHHHHHH
Q 008925 225 MRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFS-TIMDAW---SSAGLMGKCQEIFDD 300 (548)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~ 300 (548)
...++.+.+.. |.++.++..+...+...|+++++.+.+..+.+.++. +...+. .-..++ ...+..+.+.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888877764 556667777778888888888888888887776543 222221 111111 222222333334444
Q ss_pred HHHcC---CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHhccCChHHHHHHHHHHHHc
Q 008925 301 MVKAG---IEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVM---FTTVISGWCNAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 301 ~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 374 (548)
+.+.. .+.++..+..++..+...|+.++|.+++++..+.. ||... ...........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 44432 12478888899999999999999999999998853 44432 122222234457888999999998876
Q ss_pred CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 375 GINPNL--KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 375 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
. |.|+ ....++++.|.+.|++++|.++|+........|+...+..++.++.+.|+.++|.+++++..
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 5555 66779999999999999999999964443357999888899999999999999999999864
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-14 Score=134.41 Aligned_cols=285 Identities=11% Similarity=0.046 Sum_probs=182.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008925 148 KNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRF 227 (548)
Q Consensus 148 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 227 (548)
.|+++.|.+.+....+.. +-....|..........|+++.|...+.++.+....+...........+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 466666666665544431 1112222222344466666666666666665542221111111224556666777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhCCChhHHHHHHHH
Q 008925 228 LYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDV-------VTFSTIMDAWSSAGLMGKCQEIFDD 300 (548)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (548)
++++.+.. |.++.....+...|...|+++++.+++..+.+....++. .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 66666654 445566666666666667777777777666665433221 1222233333334455556666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 008925 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL 380 (548)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (548)
+.+.- +.++.....+...+...|+.++|..++++..+. +|+.... ++.+....++.+++++..++..+.. |.|.
T Consensus 255 lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~ 328 (398)
T PRK10747 255 QSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTP 328 (398)
T ss_pred CCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCH
Confidence 54432 567778888888888899999999888888874 4554322 2333345588888888888888764 5666
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 381 KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
..+..++..|.+.|++++|.+.|+.+.+. .|+...+..++.++.+.|+.++|.+++++..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77888888899999999999999888874 6888888888888899999999988888865
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-17 Score=149.54 Aligned_cols=262 Identities=17% Similarity=0.210 Sum_probs=100.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc
Q 008925 34 TLVAALTRQKRFKSILSLISKVEKDG-MKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNV 112 (548)
Q Consensus 34 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (548)
.+...+.+.|++++|++++++..... .+.+...|..+...+...++++.|+..++++...+ +-++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45777778888888888886544332 23344555556666677888888888888887764 2245566666666 677
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008925 113 GKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASG-IQPDAVTYNTLARAYAQYGETYRAEQ 191 (548)
Q Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~ 191 (548)
+++++|.++++...+. .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|+.
T Consensus 91 ~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888887766543 3556667777777888888888888888876532 24566777778888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCC
Q 008925 192 MLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGV 271 (548)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 271 (548)
.+++..+..+. |......++..+...|+.+++..++....... +.|+..+..+..++...|++++|...++...+..
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 88888776443 56777778888888888888777777776643 4566677788888888888888888888877764
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 008925 272 KPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVK 303 (548)
Q Consensus 272 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (548)
+.|+.....+..++...|+.++|..+.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 33777777888888888888888888776653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-17 Score=150.90 Aligned_cols=259 Identities=15% Similarity=0.129 Sum_probs=82.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 008925 175 TLARAYAQYGETYRAEQMLFEMQNNQ-VRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDI 253 (548)
Q Consensus 175 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (548)
.+...+...|++++|+++++...... .+.+...|..+...+...++++.|+..++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44666667777777777775443333 23344444555556666677777777777776644 2244455555555 566
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 008925 254 KDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG-IEPDIHVFSILAKGYVRAGEPQKAESI 332 (548)
Q Consensus 254 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (548)
+++++|.+++...-+.. +++..+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|++++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666665544432 344455556666666677777777766655422 234555666666666677777777777
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008925 333 LTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGV 411 (548)
Q Consensus 333 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 411 (548)
++++++. .| |......++..+...|+.+++.++++...+.. +.|+..+..++.+|...|++++|+.+|++..+..
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 7776664 24 34556666666666677766666666666543 4455556666667777777777777777666532
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 412 RPKKSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 412 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
+.|+.+...+++++...|+.++|.++.+++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp TT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 234556666667777777777777666654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-15 Score=139.33 Aligned_cols=287 Identities=15% Similarity=0.087 Sum_probs=230.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008925 150 SIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQV--RPNERTCGIIVSGYCKEGNMEDAMRF 227 (548)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 227 (548)
+.++|+..|.++... +.-+..+...++++|...+++++|+++|+.+.+..+ ..+...|...+..+-+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 567899999996554 333456777889999999999999999999987632 2256777777765422 223333
Q ss_pred H-HHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 008925 228 L-YRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI 306 (548)
Q Consensus 228 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (548)
+ +.+.+. .+..+.+|-.+..+|.-+++++.|++.|++..+.++. ...+|+.+..-+.....+|.|...|+.++..+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 3 333333 3667899999999999999999999999999986532 67888888888888999999999999998654
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008925 307 EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETL 386 (548)
Q Consensus 307 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 386 (548)
+.+-.+|.-|+..|.+.++++.|+-.|+++.+.+ +-+.+....++..+.+.|+.++|+++++++...+ +.|+..-..-
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 3445577778899999999999999999999864 2356677788888999999999999999999876 6677766677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 387 LWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
+..+...+++++|+..++++++ +.|+.. .+..++..|.+.|+.+.|+.-|.-|.+.+|.-
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 7888889999999999999998 467765 78888999999999999999999988777654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-13 Score=131.34 Aligned_cols=283 Identities=13% Similarity=0.086 Sum_probs=198.9
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHH
Q 008925 112 VGKPEESLKLLQLMSQDKNVKPNDRT-YNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYN--TLARAYAQYGETYR 188 (548)
Q Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~ 188 (548)
.|+++.|++.+...... .+++.. +.....+....|+++.|.+++.++.+. .|+..... .....+...|++++
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 57888888777765443 122232 333344457788888888888888765 45543322 33567778888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHcCCChhhHHH
Q 008925 189 AEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL-------VVFNSLIKGFLDIKDSDGVDK 261 (548)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 261 (548)
|...++.+.+..+. +......+...|.+.|++++|.+++..+.+....++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888777544 6777777888888888888888888888776533222 122233333333444555566
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC
Q 008925 262 ALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGV 341 (548)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 341 (548)
+++.+.+. .+.++.....+...+...|+.++|..++++..+. +++..... +.+....++++++++..+...+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhC-
Confidence 66655433 2446777888888999999999999999888874 56664322 233345588899999998888763
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 342 HPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 342 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
+-|...+..++..|.+.+++++|.+.|+++.+. .|+..++..+..++.+.|+.++|.+++++...
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 234556788889999999999999999999885 68888888899999999999999999988754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.5e-12 Score=113.66 Aligned_cols=444 Identities=11% Similarity=0.077 Sum_probs=326.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHh
Q 008925 32 YTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT-TSTYNTLIKGYG 110 (548)
Q Consensus 32 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 110 (548)
|-..+.--..++++..|..+|+.++... ..+...|...+.+=.++..+..|..+++++... -|. ...|--.+-.--
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHH
Confidence 3333333445778889999999998875 567888999999999999999999999999875 333 345555555555
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAE 190 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 190 (548)
..|++.-|.++|++-.. ..|+...|++.+..-.+.+.++.|..+|++.+-. .|+..+|.-..+.-.+.|....+.
T Consensus 153 ~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 67999999999999876 5899999999999999999999999999999875 699999999999999999999999
Q ss_pred HHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChhhHHHHH---
Q 008925 191 QMLFEMQNNQVR--PNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPN--LVVFNSLIKGFLDIKDSDGVDKAL--- 263 (548)
Q Consensus 191 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~--- 263 (548)
.+|+...+.--. .+...+.+...--.++..++.|.-+|+-+++.- |.+ ...|......--+-|+......+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 999987764111 122334444444446778899999999888752 333 345555555445556665554443
Q ss_pred -----HHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH--HHHHHH-----HH---HHHcCCHhH
Q 008925 264 -----TLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIH--VFSILA-----KG---YVRAGEPQK 328 (548)
Q Consensus 264 -----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~-----~~---~~~~g~~~~ 328 (548)
+...+.+ +.|-.+|-..++.-...|+.+...++|++++..- ||-.. .|...| -+ -....+.+.
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 2334433 3466778888888888999999999999999763 55321 121111 11 134678999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH----hccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008925 329 AESILTSMRKYGVHPNVVMFTTVISGW----CNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQ 404 (548)
Q Consensus 329 A~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (548)
+.++++..++. ++....||..+--.| .++.+...|.+++..++. .-|...+|...+..-.+.++++....+++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999984 444455665544444 468899999999998875 47899999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhccccccccccccccccccccC
Q 008925 405 VMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEH 484 (548)
Q Consensus 405 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~ 484 (548)
+.++.+ +-+..+|...+..-...|+.+.|..+|+-+..... .+-++..++. -.+.-.+.|
T Consensus 462 kfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~---ldmpellwka----------------YIdFEi~~~ 521 (677)
T KOG1915|consen 462 KFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPA---LDMPELLWKA----------------YIDFEIEEG 521 (677)
T ss_pred HHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc---cccHHHHHHH----------------hhhhhhhcc
Confidence 999864 23455899999999999999999999998763211 0111111221 234455677
Q ss_pred CCChhhhhhhhhhccc--ccccchhhh
Q 008925 485 NGSSAAKIRSQIVLRS--DTVWTATKS 509 (548)
Q Consensus 485 ~~~~a~~~~~~~~~~~--g~~w~~~~~ 509 (548)
.++.|..++++++.+. -..|++.-.
T Consensus 522 E~ekaR~LYerlL~rt~h~kvWisFA~ 548 (677)
T KOG1915|consen 522 EFEKARALYERLLDRTQHVKVWISFAK 548 (677)
T ss_pred hHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 7788888888888877 567887665
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-13 Score=131.71 Aligned_cols=288 Identities=11% Similarity=0.019 Sum_probs=189.5
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPN-DRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDA--VTYNTLARAYAQYGETY 187 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 187 (548)
..|+++.|.+.+.+..+. .|+ ...+-....+....|+.+.|.+++.+..+.. |+. .........+...|+++
T Consensus 96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 467788888777776553 333 3344455566777788888888887776652 333 23334567777788888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHcCCChhhHHHHHH
Q 008925 188 RAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIK---GFLDIKDSDGVDKALT 264 (548)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~ 264 (548)
.|...++.+.+..+. +..++..+...+...|++++|.+.+..+.+.+..+.......... .....+..+.....+.
T Consensus 171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 888888887776544 566777777888888888888888888877653322211111111 1122222232333444
Q ss_pred HHHHcCC---CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHhHHHHHHHHHHhC
Q 008925 265 LMEEFGV---KPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVF--SILAKGYVRAGEPQKAESILTSMRKY 339 (548)
Q Consensus 265 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (548)
.+.+..+ +.++..+..+...+...|+.++|..++++..+.. +++.... ..........++.+.+.+.++...+.
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 4433322 1367778888888899999999999999988874 2222211 11112223457788888888888775
Q ss_pred CCCCC-H--HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008925 340 GVHPN-V--VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 340 ~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (548)
.|+ . ....+++..+.+.|++++|.+.|+++......|+...+..++..+.+.|+.++|.+++++..
T Consensus 329 --~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 --VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred --CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 343 3 45678888999999999999999954443347888888899999999999999999998864
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-14 Score=136.03 Aligned_cols=289 Identities=15% Similarity=0.100 Sum_probs=218.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHhccCChHHHHHH
Q 008925 44 RFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGC--KPTTSTYNTLIKGYGNVGKPEESLKL 121 (548)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 121 (548)
+.++|+.+|+++... +.....+...+..+|...+++++|.++|+.+.+... -.+...|.+.+-.+.+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 567888888885544 344556777888899999999999999999877520 1245667766654432 223333
Q ss_pred H-HHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008925 122 L-QLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQ 200 (548)
Q Consensus 122 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 200 (548)
+ +.+... .+..+.+|.+++.+|.-+++.+.|++.|++.++.+ +....+|+.++.-+.....++.|...|+..+...
T Consensus 409 Laq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 3 222222 24567889999999999999999999999988864 3368888888888888899999999998887653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHH
Q 008925 201 VRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFST 280 (548)
Q Consensus 201 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (548)
.. +-.+|.-++..|.+.++++.|.-.|+++.+.+ |.+.+....+...+-+.|+.++|+.+++++....++ |+-.--.
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 33 44556667888999999999999999998865 566777788888888899999999999998887654 5555555
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 008925 281 IMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN 344 (548)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 344 (548)
.+..+...++.++|+..++++.+.- +.+..++..++..|.+.|+.+.|+.-|.-+.+.+.++.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 6677788899999999999988773 55566888888999999999999999988887654433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.7e-13 Score=113.77 Aligned_cols=290 Identities=12% Similarity=0.102 Sum_probs=171.0
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHhCCCHHHH
Q 008925 77 SGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPN--DRTYNILVRAWCSKNSIEEA 154 (548)
Q Consensus 77 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a 154 (548)
..+.++|.++|-+|.+.. +.+..+.-+|...|.+.|..+.|+++...+....+..-+ ......|.+-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 456677777777776642 223445556777777777777777777777654322221 12344556667777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008925 155 WNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPN----ERTCGIIVSGYCKEGNMEDAMRFLYR 230 (548)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 230 (548)
+.+|..+.+.+ ..-......|+..|-...+|++|++.-+++.+.+..+. ...|.-+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 77777776643 23345566677777777777777777776666544322 12233344444555667777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 008925 231 MKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDI 310 (548)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 310 (548)
..+.+ +..+..--.+.......|++..|.+.++.+.+.++.--+.+...|..+|...|+.++....+..+.+.. +..
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 76643 334444455566666777777777777777776544445666667777777777777777777776653 233
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc---cCChHHHHHHHHHHHH
Q 008925 311 HVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN---AVKMQRAMSIYEKMCE 373 (548)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 373 (548)
..-..+........-.+.|..++.+-+.. +|+...+..++..-.. .|...+....++.|+.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33333433333344455555554443332 4676666666665432 3345555555666553
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-13 Score=123.19 Aligned_cols=420 Identities=10% Similarity=0.042 Sum_probs=263.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 008925 31 TYTTLVAALTRQKRFKSILSLISKVEKDGMKPD-SILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT-TSTYNTLIKG 108 (548)
Q Consensus 31 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 108 (548)
.+...+.-+.+.|++++|++.|.+.+.. .|+ +..|.....+|...|+|++..+.-.+.++. .|+ +..+..-..+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 3556677788889999999999998875 566 778888888889999999988888888775 343 4456666677
Q ss_pred HhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHhcCC
Q 008925 109 YGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVA-SG--IQPDAVTYNTLARAYAQYGE 185 (548)
Q Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~g~ 185 (548)
+-..|++++|+.=..-..-.+++. +..+--.+=+.+- ..|....++-.+ .+ +-|......+....+...
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~-- 264 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD-- 264 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--
Confidence 777788777764322221111111 1111000111111 112222222222 22 123332222222222110
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCC---CCCC---------HHHHHHHHHHHHc
Q 008925 186 TYRAEQMLFEMQNNQVRPNERTCGIIVSGYCK-EGNMEDAMRFLYRMKELE---VHPN---------LVVFNSLIKGFLD 252 (548)
Q Consensus 186 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~---~~~~---------~~~~~~l~~~~~~ 252 (548)
+. ..+...+...|...-..+-..+.. ...+.+|...+.+-.... ...+ ..+.......+.-
T Consensus 265 ~~------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL 338 (606)
T KOG0547|consen 265 PK------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFL 338 (606)
T ss_pred cc------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhh
Confidence 00 000000000111111111111111 113444444433322110 0111 1233333334556
Q ss_pred CCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 008925 253 IKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESI 332 (548)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (548)
.|+.-.+..-++..+.....++ ..|..+..+|....+.++....|..+.+.+ +.++.+|..-.+++.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 7888899999999998765433 347778888999999999999999999987 77888999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 008925 333 LTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVR 412 (548)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (548)
|++.++.+ +-+...|..+.-+.-+.+.+++++..|++..+. +|..+..|+.....+...+++++|.+.|+..++. .
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E 492 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--E 492 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--c
Confidence 99999864 224557777777777889999999999999886 5778899999999999999999999999999863 3
Q ss_pred CC-------HHHHH--HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhcccccccccccccccccccc
Q 008925 413 PK-------KSTIQ--LVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSE 483 (548)
Q Consensus 413 p~-------~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~ 483 (548)
|+ ...+. .++..-. .+++.+|+++++++.+.+|. ..-+|..||.+-..+
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk---------------------ce~A~~tlaq~~lQ~ 550 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPK---------------------CEQAYETLAQFELQR 550 (606)
T ss_pred cccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCch---------------------HHHHHHHHHHHHHHH
Confidence 43 22221 2221212 28999999999998766543 344566688888888
Q ss_pred CCCChhhhhhhhh
Q 008925 484 HNGSSAAKIRSQI 496 (548)
Q Consensus 484 ~~~~~a~~~~~~~ 496 (548)
|+.++|.++.+.-
T Consensus 551 ~~i~eAielFEks 563 (606)
T KOG0547|consen 551 GKIDEAIELFEKS 563 (606)
T ss_pred hhHHHHHHHHHHH
Confidence 8888888877654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-12 Score=112.72 Aligned_cols=285 Identities=15% Similarity=0.112 Sum_probs=162.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008925 148 KNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRF 227 (548)
Q Consensus 148 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 227 (548)
.|++.+|++...+..+.+ +.....|..-+.+--..|+.+.+-.++.++.+....++....-.........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555544433 2223334444444445555555555555554443333344444444445555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhCCChhHHHHHHHH
Q 008925 228 LYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDV-------VTFSTIMDAWSSAGLMGKCQEIFDD 300 (548)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (548)
++++.+.+ +..+........+|.+.|++.....++..+.+.+.-.+. .++..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 55555443 334445555555555555555555555555555433332 2455555555555555554555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 008925 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL 380 (548)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (548)
....- ..++..-..++.-+..+|+.++|.++..+..+.+..|+ -...-.+.+-++.+.-++..++..+.- +.++
T Consensus 255 ~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 54331 44556666677777777777777777777777654444 122223455666666666666666542 4455
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 381 KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
..+..|+..|.+.+.+.+|..+|+...+. .|+..++..+++++.+.|+..+|.+..++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 66777777777777777777777766653 5777777777777777777777777777755
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-12 Score=111.40 Aligned_cols=288 Identities=12% Similarity=0.096 Sum_probs=171.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHH
Q 008925 148 KNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRP---NERTCGIIVSGYCKEGNMEDA 224 (548)
Q Consensus 148 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A 224 (548)
+.+.++|.+.|-+|.+.. +.+..+-.+|.+.|.+.|..+.|+.+.+.+.++.--+ ...+...|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 344555555555555432 2233334455555555555555555555555431110 012233445556666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCChhHHHHHHHH
Q 008925 225 MRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDV----VTFSTIMDAWSSAGLMGKCQEIFDD 300 (548)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (548)
..+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+++.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 66666666533 233455666666666667777777776666665544332 2344555555666778888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 008925 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL 380 (548)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (548)
+.+.+ +..+.+-..+++.+...|++++|.+.++.+.+.+..--..+...|..+|.+.|+.++....+.++.+.. ++.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 87765 444555666777788888888888888888776433334466777888888888888888888887753 344
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 008925 381 KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRA---IGLAREAKRVLKSAE 442 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 442 (548)
..-..+...-....-.+.|..++.+-+.. .|+...+..+++.-.. .|...+....+++|.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 44444444433344445566655555443 5777777777665543 345666666666665
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-12 Score=116.86 Aligned_cols=275 Identities=9% Similarity=-0.010 Sum_probs=178.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008925 167 QPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSL 246 (548)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (548)
..+......-..-+...+++.+..++.+.+.+..+ +....+..-|.++...|+..+-..+=.++.+.- |..+.+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 34555566666667777777777777777776533 345555555557777777766666666666643 5556777777
Q ss_pred HHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 008925 247 IKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEP 326 (548)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (548)
+--|...|+.++|.+.+.+....+.. -...|..+..++.-.|..++|...+..+.+.- +-....+.-+.--|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 77777777777777777776665422 23456677777777777777777777666541 21222233344456667777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 327 QKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEI------GINPNLKTYETLLWGYGEAKQPWRAE 400 (548)
Q Consensus 327 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (548)
+.|.+.|.++.... +.|+...+-++...-..+.+.+|..+|+..+.. ..+--..+++.|+.+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 77777777777642 335556666666666677777777777776631 00112345677777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 401 ELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 401 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
..+++.+... +-+..++..++-++...|+++.|+..|.+++-..|.
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 7777777642 345567777777777777777777777777755543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.4e-12 Score=110.87 Aligned_cols=291 Identities=14% Similarity=0.123 Sum_probs=197.7
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008925 112 VGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQ 191 (548)
Q Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 191 (548)
.|++.+|+++..+..+.. +.....|..-+.+.-..|+.+.+-+++.+..+..-.++....-+..+.....|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 477777777776654431 222344555555666677777777777777665324455556666677777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHcCCChhhHHHHHH
Q 008925 192 MLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL-------VVFNSLIKGFLDIKDSDGVDKALT 264 (548)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 264 (548)
-+.++.+.++. ++........+|.+.|++.....++..+.+.+.-.++ .+|..++.-....+..+.....|+
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 77777766554 5666777777777777777777777777776654443 356666666666666666556666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 008925 265 LMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN 344 (548)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 344 (548)
...+. .+.++..-..++.-+..+|+.++|.++..+..+.+..|. . ...-.+.+-+++..-++..++..+.. +-+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 55443 344566666777778888888888888888888765554 1 11223456677777777776666542 234
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 008925 345 VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP 413 (548)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 413 (548)
+-.+.+|+..|.+.+.+.+|...|+.+++. .|+..+|..+..++.+.|++.+|.+..++....-.+|
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 467778888888888888888888887775 6788888888888888888888888888776433333
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-11 Score=104.83 Aligned_cols=420 Identities=12% Similarity=0.064 Sum_probs=257.6
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEA 83 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 83 (548)
++...++..|+.+++.....+-.....+-..+..++...|++++|+..+..+.... .++...+..|.-++.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 45677888999998887755433333445566778889999999999999887754 56677777787777788889999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008925 84 MKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVA 163 (548)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 163 (548)
..+-.+..+ ++-.-..+...-.+.++-++-..+...+.. ....-.+|.......-.+.+|++++...+.
T Consensus 111 ~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 111 KSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888776543 333444445555566666666655555432 223344555555555567788888888776
Q ss_pred CCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCH-------------------
Q 008925 164 SGIQPDAVTYNT-LARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCK--EGNM------------------- 221 (548)
Q Consensus 164 ~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~------------------- 221 (548)
.+ |+-...|. +.-+|.+..-++-+.++++--++. ++.++.+.|.......+ .|+.
T Consensus 180 dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 180 DN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred cC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 52 44444443 334566666677777776665554 22234444433322222 1221
Q ss_pred --------------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 222 --------------EDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSS 287 (548)
Q Consensus 222 --------------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 287 (548)
+.|++++-.+.+ .-+.....++--|.+.++..+|..+.+.+.- .++.-|..-.-....
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~----~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aa 328 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMK----HIPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAA 328 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHh----hChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHH
Confidence 112222211111 1123444566677888888888877665442 123333222223333
Q ss_pred CC-------ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 008925 288 AG-------LMGKCQEIFDDMVKAGIEPD-IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAV 359 (548)
Q Consensus 288 ~~-------~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 359 (548)
.| ...-|.+.|+-.-+.+..-| ..-..++...+.-..++++.+.+++.+...-.. |...-..+..+++..|
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atg 407 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATG 407 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhc
Confidence 33 34455555554443333322 223445566666667899999999888875333 3333345888999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHH
Q 008925 360 KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVL 438 (548)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~ 438 (548)
++.+|.++|-++....+..+......|.++|.+.+.++-|..++-++ +-+.+.- .+..++.-|.+.|.+=-|-+.|
T Consensus 408 ny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 408 NYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred ChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998886655544444556778999999999887765443 2122222 4556678899999999999999
Q ss_pred HHHHhcc--CCCCC
Q 008925 439 KSAEEDR--QSMPN 450 (548)
Q Consensus 439 ~~~~~~~--~~~~~ 450 (548)
......+ |..|.
T Consensus 485 d~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 485 DELEILDPTPENWE 498 (557)
T ss_pred hHHHccCCCccccC
Confidence 8887444 45553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-10 Score=109.68 Aligned_cols=388 Identities=14% Similarity=0.118 Sum_probs=271.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHH
Q 008925 59 GMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTY 138 (548)
Q Consensus 59 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 138 (548)
.+..|...|..|.-++...|+++.+.+.|++....- -.....|..+...|...|.-..|+.+++.......-++++..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 355678899999999999999999999999987542 3356788999999999999999999998776543224444555
Q ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCC
Q 008925 139 NILVRAWCS-KNSIEEAWNVVYKMVAS--GI--QPDAVTYNTLARAYAQYG-----------ETYRAEQMLFEMQNNQVR 202 (548)
Q Consensus 139 ~~l~~~~~~-~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~ 202 (548)
....+.|.+ .+..++++++-.+++.. +. ......|..++-+|...- ...++++.+++..+.+..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 444444443 46788888887777662 11 223455555555554321 234677788888776554
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHc-CCC---------
Q 008925 203 PNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEF-GVK--------- 272 (548)
Q Consensus 203 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~--------- 272 (548)
|+.+...+.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+..... +..
T Consensus 477 -dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 -DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred -CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 445555555667788999999999999999866788899999999999999999999998865543 210
Q ss_pred ---------CCHHHHHHHHHHHHh-----------------------CCChhHHHHHHHHHH--------HcCC------
Q 008925 273 ---------PDVVTFSTIMDAWSS-----------------------AGLMGKCQEIFDDMV--------KAGI------ 306 (548)
Q Consensus 273 ---------~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~--------~~~~------ 306 (548)
....|...++..+.. .++..++......+. ..+.
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 001122222222220 011111111111111 0010
Q ss_pred -----CCC------HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 008925 307 -----EPD------IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIG 375 (548)
Q Consensus 307 -----~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 375 (548)
.|+ ...|......+.+.+..++|...+.++.+.. +-....|...+..+...|...+|.+.|..++..+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 011 1234455567778888888888888877652 3345577777788888999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCc
Q 008925 376 INPNLKTYETLLWGYGEAKQPWRAEE--LLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNK 451 (548)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 451 (548)
|.++....+++.++.+.|+..-|.. ++..+.+.+ +.+...|..++..+...|+.++|...|..+.+..++.|-.
T Consensus 715 -P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 715 -PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred -CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 6667889999999999999888888 999999864 3457799999999999999999999999998777766644
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.5e-12 Score=115.89 Aligned_cols=439 Identities=12% Similarity=0.046 Sum_probs=290.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIK 107 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 107 (548)
+..-+..+.+-+..+.++..|+-+-+++...+..|+ .---+.+++.-.|+++.|..++..-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~--d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPA--DIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChH--HHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 334455555555566667777777776665543333 3334566666666777776666554322 345666666667
Q ss_pred HHhccCChHHHHHHHHHhhhC------------CCCCCC-----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008925 108 GYGNVGKPEESLKLLQLMSQD------------KNVKPN-----------DRTYNILVRAWCSKNSIEEAWNVVYKMVAS 164 (548)
Q Consensus 108 ~~~~~g~~~~A~~~~~~~~~~------------~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 164 (548)
++.+..+++.|..++...... ....+| ...+-.-...|....+.++|...|.+.+..
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 777777777777666521100 000000 011111223444555677777777776643
Q ss_pred CCCCCHHHHHHHHHHHHh--------------------cC-CHHHHHHHHHHHHh----------------CCCCCCHHH
Q 008925 165 GIQPDAVTYNTLARAYAQ--------------------YG-ETYRAEQMLFEMQN----------------NQVRPNERT 207 (548)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~--------------------~g-~~~~a~~~~~~~~~----------------~~~~~~~~~ 207 (548)
|..++..+...-.. .+ +.+.-..+|+.... .+...+...
T Consensus 171 ----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 171 ----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred ----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence 44333322211100 01 11111122221100 011223444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 208 CGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSS 287 (548)
Q Consensus 208 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 287 (548)
......-+...+++.+..++++...+.. |+....+-.-|.++...|+..+...+-..+.+.- +..+.+|-++..-|..
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence 4555666778899999999999998875 6777777777778889999888777777777764 3357889999988989
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 008925 288 AGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSI 367 (548)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 367 (548)
.|+.++|+++|.+....+ +.-...|..++..|.-.|..+.|+..+..+-+. ++-...-+.-++--|.+.++.+-|.++
T Consensus 325 i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred hcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 999999999999998765 444668999999999999999999999887764 111222334455568888999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 368 YEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK--GVR---P-KKSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
|.++.... |.|+..++.++......+.+.+|..+|+..+.. .+. + -..++..++.++.+.+++++|+..++++
T Consensus 403 f~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 99999875 778888999988888899999999999988721 111 1 3457899999999999999999999997
Q ss_pred HhccCCCCCcchhHHHHHHHhhccccccccccccccccccccCCCChhhhhhhhhhccc
Q 008925 442 EEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEHNGSSAAKIRSQIVLRS 500 (548)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~ 500 (548)
+... |.+...|-.+|-+|.-.|+.+.|.+-..+.+...
T Consensus 482 L~l~---------------------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 482 LLLS---------------------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHcC---------------------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 6443 4456666677777888888888777776665555
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-10 Score=107.44 Aligned_cols=428 Identities=12% Similarity=0.105 Sum_probs=218.5
Q ss_pred ccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 6 GKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMK 85 (548)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 85 (548)
..+++...+.+.+.+++. .+....+....+-.+...|+.++|.+..+...+.. ..+.+.|+.+.-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 344555555555555553 22233344444444445555555555555554432 2244455555555555555555555
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 008925 86 IFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASG 165 (548)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 165 (548)
.|..+...+ +.|...|..+.-.-++.++++-....-.+..+. .+.....|..++.++.-.|+...|..+++...+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555542 223444444444444445554444444444332 12223444455555555555555555555544432
Q ss_pred -CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008925 166 -IQPDAVTYNTLA------RAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHP 238 (548)
Q Consensus 166 -~~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 238 (548)
-.|+...+.... ......|.+++|.+.+..-... +......-..-...+.+.+++++|..++..++... |
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--P 250 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--P 250 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--c
Confidence 123333322111 1223344444444444333222 11011112223344445555555555555554432 3
Q ss_pred CHHHHHHHHHHHH-cC-C----------------------------------ChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 008925 239 NLVVFNSLIKGFL-DI-K----------------------------------DSDGVDKALTLMEEFGVKPDVVTFSTIM 282 (548)
Q Consensus 239 ~~~~~~~l~~~~~-~~-~----------------------------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 282 (548)
|...|...+..+. +- + -.+...+++....+.|+++ ++..+.
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~ 327 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLR 327 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhH
Confidence 3333322222111 11 1 1122233334444444332 233333
Q ss_pred HHHHhCCChhHHHHHHHHHHH----cC----------CCCCHHH--HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH
Q 008925 283 DAWSSAGLMGKCQEIFDDMVK----AG----------IEPDIHV--FSILAKGYVRAGEPQKAESILTSMRKYGVHPNVV 346 (548)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 346 (548)
..|-.-...+-..++...+.. .| -+|.... +..++..+-+.|+++.|..+++.+..+ .|+..
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTli 405 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLI 405 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHH
Confidence 333222211111111111111 10 1455443 446678889999999999999999986 46644
Q ss_pred -HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CC----HHHHH
Q 008925 347 -MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVR--PK----KSTIQ 419 (548)
Q Consensus 347 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~ 419 (548)
.|..-.+.+...|++++|...++++.+.+ .+|...-..-+.-..+.++.++|.++.....+.|.. .+ .-.|.
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf 484 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWF 484 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHH
Confidence 56677788999999999999999999876 566655445666677889999999999888766531 11 11333
Q ss_pred HH--HHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 420 LV--ADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 420 ~l--~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
.+ +.+|.++|++.+|++-+..+......
T Consensus 485 ~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~ 514 (700)
T KOG1156|consen 485 QLEDGEAYLRQNKLGLALKKFHEIEKHYKT 514 (700)
T ss_pred hHhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33 57888999999998888777655443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.2e-11 Score=110.48 Aligned_cols=432 Identities=15% Similarity=0.118 Sum_probs=283.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 008925 31 TYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYG 110 (548)
Q Consensus 31 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (548)
.|..++.+| ..+++...+++.+.+++. .+-...+.....-.+...|+.++|........... ..+.++|..+.-.+.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence 444555544 568899999999998874 45556677666677788999999999999888754 347789999999999
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAE 190 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 190 (548)
...++++|++.|+...... +.|...+.-+.-.-.+.++++.....-..+.+.. +.....|..++.++.-.|++..|.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998753 5677888888777888899998888888887763 345677888999999999999999
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHH
Q 008925 191 QMLFEMQNNQ-VRPNERTCGIIV------SGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKAL 263 (548)
Q Consensus 191 ~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 263 (548)
.++++..+.. ..|+...+.-.. ....+.|..++|.+.+..-... +......-..-...+.+.++.++|..++
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 9999987765 345655554332 3456788889998887665332 2223334445667788999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHH-HHHhCCChhHHH-HHHHHHHHc----------------------------------CCC
Q 008925 264 TLMEEFGVKPDVVTFSTIMD-AWSSAGLMGKCQ-EIFDDMVKA----------------------------------GIE 307 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~-~~~~~~~~~----------------------------------~~~ 307 (548)
..++..+ ||...|...+. ++....+.-++. .+|....+. |++
T Consensus 243 ~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 243 RRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 9999864 56555544443 333222222333 444444322 211
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh--------CC----------CCCCHHHH--HHHHHHHhccCChHHHHHH
Q 008925 308 PDIHVFSILAKGYVRAGEPQKAESILTSMRK--------YG----------VHPNVVMF--TTVISGWCNAVKMQRAMSI 367 (548)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~----------~~p~~~~~--~~l~~~~~~~g~~~~A~~~ 367 (548)
+ ++..+...|- ++.++- +++++.. .| -+|....| ..++..+-..|+++.|..+
T Consensus 321 ~---vf~dl~SLyk---~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~y 393 (700)
T KOG1156|consen 321 S---VFKDLRSLYK---DPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEY 393 (700)
T ss_pred c---hhhhhHHHHh---chhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 1 1112222111 111111 2222211 00 13444444 3456667778888888888
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 368 YEKMCEIGINPNL-KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 368 ~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
++.+++. .|+. ..|..-.+.+.+.|+.++|..++++..+.+ .||..+-..-+.-..++.+.++|.++....-..+
T Consensus 394 Id~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~- 469 (700)
T KOG1156|consen 394 IDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG- 469 (700)
T ss_pred HHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc-
Confidence 8888875 4554 445566678888888888888888887754 4565555566777778888888888877643222
Q ss_pred CCCCcchhHHHHHHHhhccccccccccccccccccccCCCChhhhhh
Q 008925 447 SMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEHNGSSAAKIR 493 (548)
Q Consensus 447 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~~~~ 493 (548)
..++..+......|-. +.=|..|.++++|-.|.+-.
T Consensus 470 -------~~~~~~L~~mqcmWf~----~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 470 -------FGAVNNLAEMQCMWFQ----LEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred -------cchhhhHHHhhhHHHh----HhhhHHHHHHHHHHHHHHHH
Confidence 1333444443333221 11244566666665555533
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-11 Score=109.46 Aligned_cols=198 Identities=13% Similarity=0.080 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGY 109 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (548)
..+..++..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 445555555666666666666666655442 3334455555555566666666666666555542 23344555555555
Q ss_pred hccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008925 110 GNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRA 189 (548)
Q Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 189 (548)
...|++++|...+++.......+.....+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 55666666666665554432112223344445555555555555555555555442 22344444555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008925 190 EQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRM 231 (548)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 231 (548)
...+++.... .+.+...+..++..+...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555443 1223344444444455555555555554444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-09 Score=96.16 Aligned_cols=294 Identities=10% Similarity=0.001 Sum_probs=222.3
Q ss_pred HHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008925 145 WCSKNSIEEAWNVVYKMVAS-GIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMED 223 (548)
Q Consensus 145 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 223 (548)
.+..++...|...+-.+... -++-|......+..++...|+.++|+..|++.+..++- +........-.+.+.|+++.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhh
Confidence 33445555555554444333 24556778889999999999999999999998765322 33344444556678899998
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 008925 224 AMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVK 303 (548)
Q Consensus 224 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (548)
...+...+.... .-....|..-+......+++..|..+-++.++.+.. +...+..-..++...+++++|.-.|+.+..
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 888888876642 223344555555666778889999988888887533 556676677788899999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHh-ccCChHHHHHHHHHHHHcCCCCC-H
Q 008925 304 AGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVI-SGWC-NAVKMQRAMSIYEKMCEIGINPN-L 380 (548)
Q Consensus 304 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~ 380 (548)
.. |.+...|.-|+.+|...|.+.+|.-+-+...+. ++.+..+..-++ ..+. .-.--++|.+++++.+.. .|+ .
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~ 438 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYT 438 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccH
Confidence 74 567889999999999999999999888777654 334555655553 2232 223358899999999885 455 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 381 KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
...+.+...|...|.++.++.++++.+. ..||......+++.+...+.+.+|...|..++..+|.
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 6778888999999999999999999886 4789999999999999999999999999999987765
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6e-12 Score=108.07 Aligned_cols=234 Identities=12% Similarity=0.086 Sum_probs=132.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 008925 209 GIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSA 288 (548)
Q Consensus 209 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 288 (548)
+.+..+|.+.|.+.+|.+.|+..+.. .|-+.||..+-+.|.+..++..|..++.+-.+. .+.++.....+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34555555566666666555555543 344455555555565555565665555555543 122333333445555556
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 008925 289 GLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIY 368 (548)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 368 (548)
++.++|.++|+...+.. +.++....++...|.-.++++.|+.++++++..|+. +...|+.+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 66666666666666553 445555555555666666666666666666666643 5556666666666666666666666
Q ss_pred HHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 369 EKMCEIGINPNL--KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 369 ~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
++++..--.|+. ..|..|.......|++.-|.+.|+-.+..+ .-..+.+++++-+-.+.|++++|..++..+....|
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 666543322332 345566666666666666666666665432 22234666666666666666666666666665555
Q ss_pred CC
Q 008925 447 SM 448 (548)
Q Consensus 447 ~~ 448 (548)
.+
T Consensus 461 ~m 462 (478)
T KOG1129|consen 461 DM 462 (478)
T ss_pred cc
Confidence 44
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-11 Score=108.71 Aligned_cols=199 Identities=14% Similarity=0.089 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 240 LVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKG 319 (548)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (548)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3455555666666666666666666665543 2244556666667777777777777777777654 4455666777777
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 320 YVRAGEPQKAESILTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWR 398 (548)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (548)
+...|++++|...++++......+ ....+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776532112 23456667777777888888888888877754 4456677777788888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 399 AEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 399 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
|...+++..+. .+.+...+..++.++...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88888887765 23345566666777777888888887777654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-11 Score=122.70 Aligned_cols=268 Identities=9% Similarity=-0.034 Sum_probs=189.4
Q ss_pred CCHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHh
Q 008925 27 PTLITYTTLVAALT-----RQKRFKSILSLISKVEKDGMKPDSILFNAMINACSE---------SGNVDEAMKIFQKMKD 92 (548)
Q Consensus 27 ~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~ 92 (548)
.+..+|...+++.. ..+++++|+++|++..+.. |.+...|..+..++.. .+++++|...++++.+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45555555544431 2356899999999998863 3345566666655442 3457899999999988
Q ss_pred cCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 008925 93 SGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVT 172 (548)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 172 (548)
.. +.+..++..+...+...|++++|+..|++..+.. |.+...+..+...+...|++++|+..++++++.. +.+...
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~ 408 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAA 408 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhh
Confidence 74 4467888888889999999999999999998753 4556788888999999999999999999999875 223334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 008925 173 YNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLD 252 (548)
Q Consensus 173 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (548)
+..++..+...|++++|...++++.....+.+...+..+..++...|++++|...+.++.... +.+....+.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 444555677789999999999998766433355667778888999999999999998876542 3344566667777777
Q ss_pred CCChhhHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 008925 253 IKDSDGVDKALTLMEEFG-VKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG 305 (548)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (548)
.|+ .+...++.+.+.. ..+....+ +...+.-.|+.+.+..+ +++.+.+
T Consensus 488 ~g~--~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NSE--RALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cHH--HHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 774 7777776665531 11221222 33445566777777666 7777653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.7e-11 Score=118.88 Aligned_cols=149 Identities=10% Similarity=-0.092 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 008925 221 MEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDD 300 (548)
Q Consensus 221 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (548)
+++|...++++.+.+ |.+...+..+...+...|++++|...++++.+.++ .+...+..+..++...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455555555555543 33444555555555555555555555555555432 1334444455555555555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
+++.+ |.+...+..++..+...|++++|...++++.+.. +| +...+..+..++...|+.++|...++++..
T Consensus 398 Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 398 CLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 55543 2222222223333444555555555555544331 12 222344444455555555555555555443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-12 Score=108.86 Aligned_cols=264 Identities=10% Similarity=0.061 Sum_probs=214.6
Q ss_pred HHHhCCCHHHHHHHHHHHHHC---C------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 144 AWCSKNSIEEAWNVVYKMVAS---G------IQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSG 214 (548)
Q Consensus 144 ~~~~~g~~~~a~~~~~~~~~~---~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (548)
.+...+|+..|........+. + ...|-..-+.+.++|.+.|.+.+|.+.++..++. .|-+.||..|...
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskv 265 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKV 265 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHH
Confidence 344566777766544443221 1 1112223367899999999999999999998876 4566788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHH
Q 008925 215 YCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKC 294 (548)
Q Consensus 215 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 294 (548)
|.+..++..|+.+|.+-++. .|-++....-+...+-..++.+++.++++...+.. +.++....++...|.-.++++.|
T Consensus 266 Y~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~A 343 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMA 343 (478)
T ss_pred HHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHH
Confidence 99999999999999998875 35566666677888888899999999999998875 44677777888888999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHH
Q 008925 295 QEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNV--VMFTTVISGWCNAVKMQRAMSIYEKMC 372 (548)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 372 (548)
+.+|+++++.| ..++..|+.+.-+|...++++-++..|++++..-..|+. ..|-.+.......|++.-|.+.|+-++
T Consensus 344 lryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 344 LRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred HHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence 99999999998 578899999999999999999999999999876544553 478889988999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008925 373 EIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK 415 (548)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 415 (548)
..+ +.+...++.|...-.+.|+.++|..+++.+... .|+.
T Consensus 423 ~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~--~P~m 462 (478)
T KOG1129|consen 423 TSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV--MPDM 462 (478)
T ss_pred ccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh--Cccc
Confidence 875 567789999999999999999999999988763 4553
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-09 Score=99.95 Aligned_cols=428 Identities=11% Similarity=0.155 Sum_probs=267.2
Q ss_pred cccccCChhhHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHHCCCCCC--HHHHHHHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEG------HRPTLITYTTLVAALTRQKRFKS---ILSLISKVEKDGMKPD--SILFNAMI 71 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~l~ 71 (548)
.+...+++++|-+.+...+... .+.+-..|..+....++.-+.-. ...+++.+... -+| ...|.+|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 3566777788877777776531 12244566666666665543332 33344444433 234 35899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC----------------------ChHHHHHHHHHhhhCC
Q 008925 72 NACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVG----------------------KPEESLKLLQLMSQDK 129 (548)
Q Consensus 72 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~~~~~~~~ 129 (548)
..|.+.|.+++|..+|++..+. ..++.-|..+..+|+... +++-...-|+.+....
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 9999999999999999998875 234444555555554321 1222333344443321
Q ss_pred C----------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 008925 130 N----------VKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD------AVTYNTLARAYAQYGETYRAEQML 193 (548)
Q Consensus 130 ~----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~ 193 (548)
. .+.++..|..-+.. ..|+..+-...|.++++. +.|. ...|..+.+.|-..|+.+.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 12223333333322 356777788888888765 2232 356888999999999999999999
Q ss_pred HHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----------------CCHHHHHHHHHHHHcC
Q 008925 194 FEMQNNQVRPN---ERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVH-----------------PNLVVFNSLIKGFLDI 253 (548)
Q Consensus 194 ~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~ 253 (548)
++..+-.++.- ..+|.....+=.+..+++.|+++.+++...... .+...|...+..--..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99887654322 345555556666778899999999887653211 1334566666666677
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHH---cCCHhHH
Q 008925 254 KDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIH-VFSILAKGYVR---AGEPQKA 329 (548)
Q Consensus 254 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~---~g~~~~A 329 (548)
|-++....+++.+.+..+- ++.........+....-++++.++|++-+..--.|+.. .|+..+.-+.+ ...++.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 8888889999999887654 44444444555667778889999998877664455543 66666555443 2368899
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH--HHHhccCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHH
Q 008925 330 ESILTSMRKYGVHPNVVMFTTVI--SGWCNAVKMQRAMSIYEKMCEIGINPNL--KTYETLLWGYGEAKQPWRAEELLQV 405 (548)
Q Consensus 330 ~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (548)
..+|+++++ |++|...-+.-|+ ..=-..|-...|+++++++... +++.. ..|+..+.--...=-+.....+|++
T Consensus 570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 999999998 5666544222222 2223568889999999998764 23332 3466555433333234456677777
Q ss_pred HHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 406 MEEKGVRPKKST---IQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 406 ~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
+++. -|+... ....++.=.+.|..+.|..++.-..
T Consensus 648 aIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 648 AIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred HHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 7764 455432 3334556677788888888876655
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.1e-09 Score=98.50 Aligned_cols=479 Identities=13% Similarity=0.089 Sum_probs=254.8
Q ss_pred ccccCChhhHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGH-RPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
+..+|+......+|+.++..-+ ......|...+......+-++.+..++++.++. . +..-...+..+.+.+++++
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~--P~~~eeyie~L~~~d~~~e 187 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--A--PEAREEYIEYLAKSDRLDE 187 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--C--HHHHHHHHHHHHhccchHH
Confidence 3456666666666666655421 112234555555555666666666666666543 2 2234555666666666666
Q ss_pred HHHHHHHHHhc------CCCCCHHHHHHHHHHHhccCChH---HHHHHHHHhhhCCCCCCCH--HHHHHHHHHHHhCCCH
Q 008925 83 AMKIFQKMKDS------GCKPTTSTYNTLIKGYGNVGKPE---ESLKLLQLMSQDKNVKPND--RTYNILVRAWCSKNSI 151 (548)
Q Consensus 83 A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 151 (548)
|.+.+...+.. ..+.+...|.-+-...++.-+.- ....+++.+... -+|. ..|++|...|.+.|.+
T Consensus 188 aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 188 AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHHHHHHHHhhhh
Confidence 66666665432 01223344444444444332221 122333333322 2332 4677888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------C------CHHHHHHHHHHHHhCCC--------
Q 008925 152 EEAWNVVYKMVASGIQPDAVTYNTLARAYAQY----------------G------ETYRAEQMLFEMQNNQV-------- 201 (548)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g------~~~~a~~~~~~~~~~~~-------- 201 (548)
++|.++|++.+..- .+..-|+.+.++|+.- + +++-...-|+.+.+...
T Consensus 265 ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 265 EKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred HHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 88888888876642 2333333333333221 1 11122223333322211
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCC
Q 008925 202 ---RPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPN------LVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVK 272 (548)
Q Consensus 202 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 272 (548)
+.+...|..-+.. ..|+..+-...+.+++.. +.|. -..|..+...|-..|+.+.|..+|++..+...+
T Consensus 343 RQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 1122233322222 245666666777766553 1221 246777788888888888888888887775433
Q ss_pred CC---HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-----------C------CHHHHHHHHHHHHHcCCHhHHHHH
Q 008925 273 PD---VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIE-----------P------DIHVFSILAKGYVRAGEPQKAESI 332 (548)
Q Consensus 273 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~g~~~~A~~~ 332 (548)
.- ..+|..-...-.+..+++.|+.+.+.+...--. + +...|..++...-..|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 11 234444445555677788888877776532111 1 223455555555567778888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 008925 333 LTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL-KTYETLLWGYGE---AKQPWRAEELLQVMEE 408 (548)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 408 (548)
++.+.+..+. ++....+..-.+-.+.-++++.++|++-+..-..|+. ..|+..+.-+.+ .-..+.|..+|+++++
T Consensus 500 YdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 500 YDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 8888765432 3333333344445566677788777776654334554 345555444332 2357889999999888
Q ss_pred CCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-----CC-----------Ccc-hhHHHHHHHhhcccccc
Q 008925 409 KGVRPKKS--TIQLVADSWRAIGLAREAKRVLKSAEEDRQS-----MP-----------NKK-DEIAVESIHRKQNLSAS 469 (548)
Q Consensus 409 ~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~-----------~~~-~~~~~~~l~~~~~~~~~ 469 (548)
|.+|... +|...+..=-+.|....|+.+++++-..-+. ++ |-. ....-++..+..++...
T Consensus 579 -~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~ 657 (835)
T KOG2047|consen 579 -GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKA 657 (835)
T ss_pred -cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHH
Confidence 5556544 3334444555668888888888886421110 00 110 11111222222222223
Q ss_pred ccccccccccccccCCCChhhhhhhhh
Q 008925 470 NSTFLQIPGVVSSEHNGSSAAKIRSQI 496 (548)
Q Consensus 470 ~~~~~~l~~~y~~~~~~~~a~~~~~~~ 496 (548)
-...++.+++-.+.|..|.|..|+.--
T Consensus 658 r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 658 REMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 334555677777777777777776443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-09 Score=93.95 Aligned_cols=388 Identities=9% Similarity=0.019 Sum_probs=247.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCh
Q 008925 36 VAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKP 115 (548)
Q Consensus 36 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 115 (548)
+.-+....|+..|+.+++.-...+-.....+-.-+..++...|++++|+..+..+.... .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44556678999999999887654322222334445677789999999999999988754 56777788888888888999
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008925 116 EESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFE 195 (548)
Q Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 195 (548)
.+|..+-.... .++.....+.....+.++-++-..+.+.+.+ ...--.+|.......-.+.+|+++++.
T Consensus 108 ~eA~~~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99998877653 3455556667777788888877777666643 234445667777777889999999999
Q ss_pred HHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHH--------
Q 008925 196 MQNNQVRPNERTCGI-IVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLM-------- 266 (548)
Q Consensus 196 ~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------- 266 (548)
++... |+-...|. +.-+|.+..-++-+.+++.--+.. ++.++...|..+....+.-.-..|+.-.+.+
T Consensus 177 vL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 177 VLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred HHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 98753 34445554 345677787788888887776653 3445555555544433322111222211111
Q ss_pred ------HHcC------------CCC-----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 008925 267 ------EEFG------------VKP-----DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRA 323 (548)
Q Consensus 267 ------~~~~------------~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (548)
.+++ +-| -+..-..++--|.+.+++.+|..+.+.+. |.++.-|..-.-.+...
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAAL 329 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHh
Confidence 1111 001 12233345556778888888888877654 33444343333333444
Q ss_pred CC-------HhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008925 324 GE-------PQKAESILTSMRKYGVHPNV-VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQ 395 (548)
Q Consensus 324 g~-------~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (548)
|+ ..-|.+.|+-.-..+..-|. .--.++...+.-..++++.+.++..+...- ..|..-...+..+++..|.
T Consensus 330 GQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgn 408 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGN 408 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcC
Confidence 33 34455555544333322222 223445555555567888888888887653 3444444568899999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 396 PWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 396 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
+.+|.++|-++....++.+..-...+++++.+.++.+-|..++-++..
T Consensus 409 y~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t 456 (557)
T KOG3785|consen 409 YVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT 456 (557)
T ss_pred hHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC
Confidence 999999998776544433333444567889999999999988877543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.1e-09 Score=96.02 Aligned_cols=418 Identities=14% Similarity=0.111 Sum_probs=221.3
Q ss_pred ccccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 008925 2 NILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVD 81 (548)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 81 (548)
+.+..+|++++|......++..+ +.+..++..=+-++.+.++|++|+.+.+.-.... .-+...|. =..+..+.+..+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~fE-KAYc~Yrlnk~D 96 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFFE-KAYCEYRLNKLD 96 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhHH-HHHHHHHcccHH
Confidence 45667899999999999999876 3366777888888899999999997666532110 11111111 123345789999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 008925 82 EAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKM 161 (548)
Q Consensus 82 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 161 (548)
+|+..++-.. +.+..+...-...+.+.|++++|+++|+.+.+...-.-+...-..++.+-. ...+ ++.+..
T Consensus 97 ealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~-~~~q~v 167 (652)
T KOG2376|consen 97 EALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQV-QLLQSV 167 (652)
T ss_pred HHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhH-HHHHhc
Confidence 9999988332 124446777778888999999999999999764311111111122221110 0011 112221
Q ss_pred HHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCCH-------HHHHHHHHHHHhcCCHHHH
Q 008925 162 VASGIQPDAVTYN---TLARAYAQYGETYRAEQMLFEMQNNQ-------VRPNE-------RTCGIIVSGYCKEGNMEDA 224 (548)
Q Consensus 162 ~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~l~~~~~~~g~~~~A 224 (548)
.. .| ..+|. ...-.+...|++.+|+++++...+.+ -.-+. ..-..+...+-..|+.++|
T Consensus 168 ~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 168 PE---VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred cC---CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 11 22 22333 23345667888999988888773211 00011 1122344556678889999
Q ss_pred HHHHHHHHhCCCCCCHH----HHHHHHHHHHcCCChhh-HHHHH------------HHH---------------------
Q 008925 225 MRFLYRMKELEVHPNLV----VFNSLIKGFLDIKDSDG-VDKAL------------TLM--------------------- 266 (548)
Q Consensus 225 ~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~-a~~~~------------~~~--------------------- 266 (548)
..++...+... ++|.. .-|.++..-....-++. +...+ ..+
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99888887765 33331 22222221111111110 00000 000
Q ss_pred --------HHc-CCCCCHHHHHHHHHHHH--hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH-
Q 008925 267 --------EEF-GVKPDVVTFSTIMDAWS--SAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILT- 334 (548)
Q Consensus 267 --------~~~-~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~- 334 (548)
... +..|. ..+..++..+. +......+..++...-+........+...+++.....|+++.|++++.
T Consensus 323 ~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 000 01111 22233333222 111344555555554444211123455566667777788888877777
Q ss_pred -------HHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc--CCCCCHH----HHHHHHHHHHhcCChHHHHH
Q 008925 335 -------SMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEI--GINPNLK----TYETLLWGYGEAKQPWRAEE 401 (548)
Q Consensus 335 -------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~g~~~~A~~ 401 (548)
.+.+.+..| .+...+...+.+.++.+.|..++.+++.. .-.+... ++.-++..-.+.|+-++|..
T Consensus 402 ~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 402 FLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 444433333 34444555566666666666666666541 0011112 23333333445677788888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 402 LLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
.++++.+.. ++|..++..++.+|++.. .+.|+.+-+..
T Consensus 480 ~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 480 LLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred HHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 888877643 456667777777776553 55555555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-08 Score=99.08 Aligned_cols=93 Identities=13% Similarity=0.149 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 008925 210 IIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAG 289 (548)
Q Consensus 210 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 289 (548)
.+...|...|++++|++++++.++.. |..+..|..-...+-..|++.+|.+.++....... .|...-+-....+.+.|
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCC
Confidence 33444555555555555555555532 22234455555555555555555555555555432 24444444444445555
Q ss_pred ChhHHHHHHHHHHHc
Q 008925 290 LMGKCQEIFDDMVKA 304 (548)
Q Consensus 290 ~~~~a~~~~~~~~~~ 304 (548)
++++|..++....+.
T Consensus 277 ~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 277 RIEEAEKTASLFTRE 291 (517)
T ss_pred CHHHHHHHHHhhcCC
Confidence 555555555555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-09 Score=103.10 Aligned_cols=129 Identities=12% Similarity=0.043 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 008925 277 TFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN-VVMFTTVISGW 355 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 355 (548)
.|......+...+..++|...+.++.+.. +.....|...+..+...|.+.+|.+.|...... .|+ +.+..++..++
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence 34456667788888899988888887764 566778888888999999999999999999885 454 55789999999
Q ss_pred hccCChHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 356 CNAVKMQRAMS--IYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 356 ~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
...|+..-|.. ++..+++.+ +.+...|..|+..+.+.|+.++|.+.|+...+.
T Consensus 729 le~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99999888888 999999988 789999999999999999999999999998763
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9e-10 Score=93.77 Aligned_cols=322 Identities=12% Similarity=0.063 Sum_probs=217.4
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNA-MINACSESGNVD 81 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~ 81 (548)
.+++..+++.|++++..-.+..++ +......|+.+|....++..|...++++... .|...-|.. -...+.+.+.+.
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccH
Confidence 356778899999999988887544 7788899999999999999999999999875 454443332 235566889999
Q ss_pred HHHHHHHHHHhcCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 008925 82 EAMKIFQKMKDSGCKPTT--STYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVY 159 (548)
Q Consensus 82 ~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 159 (548)
.|+.+...|... ++. .+...-.......+++..+..++++.... .+..+.+...-...+.|+++.|.+-|+
T Consensus 96 DALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 96 DALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC----CccchhccchheeeccccHHHHHHHHH
Confidence 999999888652 221 22222223344678888899999888642 345566666667778999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------------CH---------------HHHHHH
Q 008925 160 KMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRP-------------NE---------------RTCGII 211 (548)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~~l 211 (548)
...+.+--.....|+. .-+..+.|++..|++...++.++|++. |. ..+|.-
T Consensus 169 aAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 9988754445566664 446778899999999999998876532 11 122333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 008925 212 VSGYCKEGNMEDAMRFLYRMKEL-EVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGL 290 (548)
Q Consensus 212 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 290 (548)
...+.+.|+++.|.+.+..|.-+ ....|++|...+.-.-.. +++.....-+..+.+.++ ....||..++-.||+..-
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHH
Confidence 34456788888888888877432 234577777776654433 445555555666666654 346788888889999988
Q ss_pred hhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 008925 291 MGKCQEIFDDMVKAGI-EPDIHVFSILAKGYVRAGEPQKAESILTSMR 337 (548)
Q Consensus 291 ~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 337 (548)
++.|-.++.+-....+ -.+...|+.|=......-.+++|++-++.+.
T Consensus 326 f~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 326 FDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8888887765332211 1233334433333334456677766665543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.1e-11 Score=111.74 Aligned_cols=167 Identities=20% Similarity=0.253 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHc-----C-CCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhC---CCCCC-
Q 008925 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKA-----G-IEPDIH-VFSILAKGYVRAGEPQKAESILTSMRKY---GVHPN- 344 (548)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~- 344 (548)
.+++.|..+|.+.|++++|..+++++.+. + ..|... .++.++..+...+++++|..+++...+. -+.++
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 34445555555555555555555544421 1 112222 3444555566666666666666554431 01112
Q ss_pred ---HHHHHHHHHHHhccCChHHHHHHHHHHHHc-----C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CC
Q 008925 345 ---VVMFTTVISGWCNAVKMQRAMSIYEKMCEI-----G-INP-NLKTYETLLWGYGEAKQPWRAEELLQVMEE----KG 410 (548)
Q Consensus 345 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 410 (548)
..+++.|...|...|++++|.++|++++.. + ..+ ....++.|...|.+.+.+++|.++|.+... .|
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 235667777777777777777777776642 1 111 134566677777777777777777666532 22
Q ss_pred C-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 411 V-RPKKS-TIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 411 ~-~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
. .|+.. +|.+|+.+|.+.|++++|+++.+.+.
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 23433 67777777777777777777777766
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-10 Score=93.67 Aligned_cols=201 Identities=12% Similarity=0.020 Sum_probs=153.2
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 242 VFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYV 321 (548)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (548)
+...+.-.|...|+...|.+-+++.+++.+ .+..++..+...|.+.|..+.|.+.|+.+++.. +.+-.+.|..+..+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 445566778888888888888888887753 256677778888888888888888888888775 566678888888888
Q ss_pred HcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 322 RAGEPQKAESILTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAE 400 (548)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (548)
..|++++|...|+++...-.-+ -..+|..++.+..+.|+.+.|..+|++.++.. +....+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 8888888888888887642111 24578888888888888888888888888875 555677778888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 401 ELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 401 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
.+++.....+. ++.+++...+.+-.+.|+.+.|-++=.......|
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 88888776653 7788777777888888888887777666554444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.6e-10 Score=91.77 Aligned_cols=199 Identities=13% Similarity=0.057 Sum_probs=137.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 008925 31 TYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYG 110 (548)
Q Consensus 31 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (548)
+...|+-.|.+.|++..|..-+++.++.. |.+..+|..+...|.+.|+.+.|.+.|++.++.. +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45566667777777777777777777753 3345577777777777777777777777777653 335566777777777
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAE 190 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 190 (548)
..|++++|...|++.........-..+|..++-+..+.|+++.|...|++.++.. +-...+...+.+.....|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 7777777777777777665555555677777777777777777777777777664 334556666777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 191 QMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKE 233 (548)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 233 (548)
.+++.....+. ++..++...|..-...|+.+.+-++=.++..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77777766655 5777777777777777777776666555544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-08 Score=91.49 Aligned_cols=302 Identities=10% Similarity=0.056 Sum_probs=222.2
Q ss_pred HhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008925 109 YGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYR 188 (548)
Q Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 188 (548)
.+..++...|...+-.+.....++.|......+..++...|+.++|+..|++....+ +-+........-.+...|++++
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhh
Confidence 334556666666555554444467788888999999999999999999999987653 2233334444555677888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 008925 189 AEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEE 268 (548)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 268 (548)
...+...+....- .+...|..-+......+++..|+.+-++.+..+ +.+...+-.-...+...+++++|.-.|+....
T Consensus 285 ~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 8888887765421 133444444555566788999999999988764 44556666667778889999999999998887
Q ss_pred cCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHH-cCCHhHHHHHHHHHHhCCCCCC-H
Q 008925 269 FGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILA-KGYVR-AGEPQKAESILTSMRKYGVHPN-V 345 (548)
Q Consensus 269 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~-~ 345 (548)
.. +.+..+|..++.+|...|++.+|...-....+. ++.+..+.+.++ ..+.- ...-++|.++++..++. .|+ .
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~ 438 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYT 438 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccH
Confidence 64 346788999999999999999999888877765 255666766664 33332 23356899999888874 565 3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLV 421 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l 421 (548)
...+.+...+...|..++++.++++.+.. .||....+.|+..+...+.+++|++.|..++.. .|... +...+
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~~~sl~Gl 511 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CccchHHHHHH
Confidence 46677888889999999999999998874 688888999999999999999999999998874 46544 55443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-09 Score=99.49 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=85.9
Q ss_pred ccccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCh
Q 008925 2 NILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPD-SILFNAMINACSESGNV 80 (548)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 80 (548)
++.+..|+++.|+.+|.+++...+. |-+.|..-..++...|++++|++=-.+..+. .|+ +..|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 4567899999999999999998655 8889999999999999999999888877775 455 56899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008925 81 DEAMKIFQKMKDSGCKPTTSTYNTLIKGY 109 (548)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (548)
++|+..|.+-++.. +.+...++.+..++
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 99999999988763 33445566666555
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-09 Score=102.49 Aligned_cols=135 Identities=18% Similarity=0.144 Sum_probs=110.6
Q ss_pred CCCH--HHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 008925 237 HPNL--VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFS 314 (548)
Q Consensus 237 ~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 314 (548)
+|+. .++..+.+.|...|++++|.+.++..+++.+. .+..|..-...+-+.|++.+|...++.+...+ ..|...-+
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNs 266 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINS 266 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHH
Confidence 3444 45567788899999999999999999997533 47888899999999999999999999999887 67788888
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH--H----HH--HHHHHHHhccCChHHHHHHHHHHHH
Q 008925 315 ILAKGYVRAGEPQKAESILTSMRKYGVHPNV--V----MF--TTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 315 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~----~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
-.+..+.+.|++++|.+++....+.+..|-. . +| ...+.+|.+.|++..|++.|..+.+
T Consensus 267 K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 267 KCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8889999999999999999999876543322 1 22 4567788999999999988887775
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-09 Score=104.46 Aligned_cols=414 Identities=14% Similarity=0.144 Sum_probs=220.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC------------------------CCHHHHHHH
Q 008925 15 YIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMK------------------------PDSILFNAM 70 (548)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------------------~~~~~~~~l 70 (548)
.++-.+...|+.|+.++|..++..|+..|+.+.|- +|.-|.-.+.+ |.+.+|..|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 45566677899999999999999999999999998 78777643333 445566666
Q ss_pred HHHHHhcCChHH---HHHHHHHHHh----cCCC-CCH-------------HHHHHHHHHHhccCChHHHHHHHHHhhhCC
Q 008925 71 INACSESGNVDE---AMKIFQKMKD----SGCK-PTT-------------STYNTLIKGYGNVGKPEESLKLLQLMSQDK 129 (548)
Q Consensus 71 ~~~~~~~g~~~~---A~~~~~~~~~----~~~~-~~~-------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 129 (548)
..+|...||... +.+.++.+.. .|+- |.. ..-...+......|.++.+++++..++...
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 666666666433 2221211111 1110 000 001122223333444555555554443322
Q ss_pred CCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008925 130 NVKPNDRTYNILVRAWCSKN-SIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTC 208 (548)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 208 (548)
...|... +++-+.... .+++-........+ .|+..+|..++.+-...|+.+.|..++.+|.+.|++.+..-|
T Consensus 170 ~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 170 WNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred ccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 1111111 122222222 22333333333322 478888888888888889999999999999988888888777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhh------------------------HHHHHH
Q 008925 209 GIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDG------------------------VDKALT 264 (548)
Q Consensus 209 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------------a~~~~~ 264 (548)
..++-+ .++...+..+++-|.+.|+.|+..|+...+..+.++|.... |.+.++
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~ 319 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLR 319 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHH
Confidence 777654 77888888888888888888888887776666555333211 111111
Q ss_pred HH------------HHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHHcCC----
Q 008925 265 LM------------EEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG--I-EPDIHVFSILAKGYVRAGE---- 325 (548)
Q Consensus 265 ~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~---- 325 (548)
.- .-.|.......|.... -....|.-+...++-..+..-. . +.++..+..++.-|.+.-+
T Consensus 320 ~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~ 398 (1088)
T KOG4318|consen 320 QNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHIC 398 (1088)
T ss_pred HHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHH
Confidence 00 0001111122222111 1223455555555554443210 0 1122333333333322111
Q ss_pred ------------------HhHHHHHHHHHHhC----------------CCC-------CCHHHHHHHHHHHhccCChHHH
Q 008925 326 ------------------PQKAESILTSMRKY----------------GVH-------PNVVMFTTVISGWCNAVKMQRA 364 (548)
Q Consensus 326 ------------------~~~A~~~~~~~~~~----------------~~~-------p~~~~~~~l~~~~~~~g~~~~A 364 (548)
..+..+.+...... ... +-...-+.++-.|+..-+..++
T Consensus 399 ~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~ 478 (1088)
T KOG4318|consen 399 SRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKI 478 (1088)
T ss_pred HHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111000 000 0011223344444444444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 365 MSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK--GVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
+..-++....-+ ...|..|+..+.+....+.|..+.++.... .+..+..-+..+.+.+.+.+....|.++++.+.
T Consensus 479 l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~k 555 (1088)
T KOG4318|consen 479 LCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDK 555 (1088)
T ss_pred HHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhh
Confidence 443333332211 155778888888888888888888887632 223445556778888889999888888888876
Q ss_pred h
Q 008925 443 E 443 (548)
Q Consensus 443 ~ 443 (548)
+
T Consensus 556 s 556 (1088)
T KOG4318|consen 556 S 556 (1088)
T ss_pred H
Confidence 4
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-10 Score=108.22 Aligned_cols=238 Identities=17% Similarity=0.193 Sum_probs=180.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-
Q 008925 169 DAVTYNTLARAYAQYGETYRAEQMLFEMQNN-----Q-VRPNER-TCGIIVSGYCKEGNMEDAMRFLYRMKEL-----E- 235 (548)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~- 235 (548)
-..+...|...|...|++++|+.+++..++. | ..|... ..+.+...|...+++.+|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3566777999999999999999999987654 2 122333 3344778899999999999999998653 1
Q ss_pred CCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHc---
Q 008925 236 VHPN-LVVFNSLIKGFLDIKDSDGVDKALTLMEEF-----GV-KPD-VVTFSTIMDAWSSAGLMGKCQEIFDDMVKA--- 304 (548)
Q Consensus 236 ~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 304 (548)
..|. ..+++.|..+|.+.|++++|...++...+. +. .|. ...++.+...+...+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1222 367888999999999999999999876543 11 122 235667778899999999999999988752
Q ss_pred CCCC-C---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 305 GIEP-D---IHVFSILAKGYVRAGEPQKAESILTSMRKY----GV--HPN-VVMFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 305 ~~~~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
-+.+ + ..+++.|...|...|++++|.+++++++.. +. .+. ...++.+...|.+.+++.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 1122 2 357899999999999999999999998752 11 222 34678899999999999999999998764
Q ss_pred ----cCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008925 374 ----IGI-NPN-LKTYETLLWGYGEAKQPWRAEELLQVM 406 (548)
Q Consensus 374 ----~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (548)
.|. .|+ ..+|..|+.+|...|+++.|.++.+..
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 221 233 367999999999999999999877653
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-09 Score=100.20 Aligned_cols=218 Identities=11% Similarity=-0.010 Sum_probs=108.2
Q ss_pred CChhhHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 8 GKPHEAHYIFNCLIEEGH---RPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAM 84 (548)
Q Consensus 8 g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 84 (548)
++.+.++..+.+++.... ......|..++..+...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445556666666664321 1112345556666666666666666666666553 334556666666666666666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008925 85 KIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVAS 164 (548)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 164 (548)
..|++.++.. +-+..+|..+..++...|++++|++.|++..+. .|+..............++.++|...|.+....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 6666666542 223455566666666666666666666666553 232221112222233445566666666554432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008925 165 GIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNN---QV---RPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELE 235 (548)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 235 (548)
. +++...+ . ......|+...+ +.+..+.+. .+ +....+|..++..+.+.|++++|+..|+++.+.+
T Consensus 195 ~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 2221111 1 122223333322 222222211 00 0122345555666666666666666666665543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-09 Score=99.29 Aligned_cols=95 Identities=13% Similarity=-0.102 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 208 CGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSS 287 (548)
Q Consensus 208 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 287 (548)
+..++..+...|++++|...|++.++.. +.+...|+.+...+...|++++|...++...+..+. +..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4444444555555555555555554433 333445555555555555555555555555544322 23444445555555
Q ss_pred CCChhHHHHHHHHHHHc
Q 008925 288 AGLMGKCQEIFDDMVKA 304 (548)
Q Consensus 288 ~~~~~~a~~~~~~~~~~ 304 (548)
.|++++|...++...+.
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55555555555555544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-09 Score=105.35 Aligned_cols=275 Identities=16% Similarity=0.265 Sum_probs=180.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCC
Q 008925 50 SLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDK 129 (548)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 129 (548)
.++-.+...|+.|+.++|..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45566777889999999999999999999999998 9998887777778888999999888888876654
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHH
Q 008925 130 NVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQN-NQVRPNERTC 208 (548)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~ 208 (548)
.|...+|..|..+|...||+.. ++..++ -...+...+...|.-.....++..+.- .+..||...
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n- 144 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN- 144 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH-
Confidence 5788899999999999998765 222222 111233334444444444444433221 123333332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 008925 209 GIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSA 288 (548)
Q Consensus 209 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 288 (548)
.+....-.|-++.+++++..+...... .+... .+.-+.. +.....++........-.|++.+|..++.+-...
T Consensus 145 --~illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 145 --AILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAA 217 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhc
Confidence 233334456666666666555322110 11111 1222222 2233344444333322247888888888888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 008925 289 GLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVK 360 (548)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 360 (548)
|+.+.|..++.+|.+.|++.+..-|..|+-+ .++..-+..++..|...|+.|+..|+...+..+...|.
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888888888888888888888777777655 67777888888888888888888888766666655444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-08 Score=93.82 Aligned_cols=390 Identities=13% Similarity=0.094 Sum_probs=234.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCC
Q 008925 36 VAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT-TSTYNTLIKGYGNVGK 114 (548)
Q Consensus 36 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 114 (548)
..+.+..|+++.|+.+|-+.+... +++...|..-..+|++.|++++|++--.+-++. .|+ +..|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 456678899999999999999885 568899999999999999999999887777765 454 5679999999999999
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHC---CCCCCHHHHHHHHHHHHhc-----
Q 008925 115 PEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEE---AWNVVYKMVAS---GIQPDAVTYNTLARAYAQY----- 183 (548)
Q Consensus 115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~----- 183 (548)
+++|+..|.+-.... +.+...++.+..++.......+ --.++..+... .......+|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999999887752 4556667777776611100000 00011111000 0000111222222222110
Q ss_pred -----CCHHHHHHHHHHHH-----hC-------CCCC------------C----------HHHHHHHHHHHHhcCCHHHH
Q 008925 184 -----GETYRAEQMLFEMQ-----NN-------QVRP------------N----------ERTCGIIVSGYCKEGNMEDA 224 (548)
Q Consensus 184 -----g~~~~a~~~~~~~~-----~~-------~~~~------------~----------~~~~~~l~~~~~~~g~~~~A 224 (548)
.....+.-.+.... .. ...| | ..-...++++..+..++..|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 01111111111000 00 0011 0 11234466666677778888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhCCChhHHHHH
Q 008925 225 MRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFST-------IMDAWSSAGLMGKCQEI 297 (548)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~ 297 (548)
++.+....+.. .+..-++....+|...|.+...........+.|-. ....++. +..++.+.++++.++..
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 88887777754 45556666667777777777666665555554421 1222222 33355556677777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 008925 298 FDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVV-MFTTVISGWCNAVKMQRAMSIYEKMCEIGI 376 (548)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 376 (548)
|.+.+.....|+. ..+....+++....+...-. .|... -...-+..+.+.|++..|++.|.++++..
T Consensus 321 ~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~- 388 (539)
T KOG0548|consen 321 YQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD- 388 (539)
T ss_pred HHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-
Confidence 7776654323222 12223334444433333322 23221 12223556667788888888888888876
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 377 NPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
|.|...|....-+|.+.|.+..|+.-.+..++. .|+.. .|..=+.++....++++|.+.|++..+.+|.
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 667778888888888888888888877777764 44433 5555566777777888888888887776643
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.8e-07 Score=83.88 Aligned_cols=395 Identities=13% Similarity=0.081 Sum_probs=232.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 008925 32 YTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGN 111 (548)
Q Consensus 32 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (548)
+.+=+..+...|++++|.+...+++..+ +.+...+..=+.++++.+++++|+.+.+.-... ..+...+.--+-+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHH
Confidence 3334556678899999999999999875 666778888888999999999999776654321 1111111122334457
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHH
Q 008925 112 VGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAV--TYNTLARAYAQYGETYRA 189 (548)
Q Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a 189 (548)
.+..++|+..++-.. +.+..+...-...+.+.|++++|+++|+.+.+.+. ++.. .-..++..-. -..+
T Consensus 92 lnk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a----~l~~ 161 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAA----ALQV 161 (652)
T ss_pred cccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHH----hhhH
Confidence 899999999998432 23445777778889999999999999999988753 2322 1122221111 1111
Q ss_pred HHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhCC-------CCCC------H-HHHHHHHHHHHc
Q 008925 190 EQMLFEMQNNQVRPNERTCGI---IVSGYCKEGNMEDAMRFLYRMKELE-------VHPN------L-VVFNSLIKGFLD 252 (548)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~------~-~~~~~l~~~~~~ 252 (548)
. + +......| ..+|.. ....+...|++.+|+++++.....+ -..+ . ....-+.-.+..
T Consensus 162 ~-~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 Q-L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred H-H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 1 1 11212222 233433 4455678999999999999883221 0111 1 122334455677
Q ss_pred CCChhhHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhCCChh-------------HHHHHHHHHH-------------
Q 008925 253 IKDSDGVDKALTLMEEFGVKPDVVT----FSTIMDAWSSAGLMG-------------KCQEIFDDMV------------- 302 (548)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~-------------~a~~~~~~~~------------- 302 (548)
.|+..+|.+++..+++..+ +|... -|.++.+-....-++ .+......+.
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888753 33211 122221110000000 0000000000
Q ss_pred ------------H--cCCCCC--HHHHHHHHHHHHH--cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 008925 303 ------------K--AGIEPD--IHVFSILAKGYVR--AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRA 364 (548)
Q Consensus 303 ------------~--~~~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 364 (548)
+ ...++. ...+..++..+.+ ...+.+|..++...-+....-...+...++......|+++.|
T Consensus 316 L~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 316 LALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 0 011222 1233334333222 224667777777776653222234556677778889999999
Q ss_pred HHHHH--------HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CC--CCC-HHHHHHHHHHHHHcCC
Q 008925 365 MSIYE--------KMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK---GV--RPK-KSTIQLVADSWRAIGL 430 (548)
Q Consensus 365 ~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~p~-~~~~~~l~~~~~~~g~ 430 (548)
++++. .+.+.+..| .+...+...+.+.++.+-|..++.+.+.. .. .+. ..++...+..-.+.|+
T Consensus 396 ~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 99999 555554334 45556667777877777777777776531 11 111 2244555566678899
Q ss_pred HHHHHHHHHHHHhccCC
Q 008925 431 AREAKRVLKSAEEDRQS 447 (548)
Q Consensus 431 ~~~A~~~~~~~~~~~~~ 447 (548)
-++|..+++++.+-.+.
T Consensus 474 ~~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 474 EEEASSLLEELVKFNPN 490 (652)
T ss_pred hHHHHHHHHHHHHhCCc
Confidence 99999999999865443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-07 Score=88.37 Aligned_cols=201 Identities=8% Similarity=-0.003 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHH--
Q 008925 29 LITYTTLVAALTRQKRFKSILSLISKVEKDGM-KPDSI-LFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNT-- 104 (548)
Q Consensus 29 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-- 104 (548)
...|..+...+...|+.+.+...+....+... .++.. ........+...|++++|.+.+++..+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 35666677777777778877766666554321 12221 22223345567888999999888887752 334434432
Q ss_pred -HHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008925 105 -LIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQY 183 (548)
Q Consensus 105 -l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (548)
........+..+.+.+.+..... ..+........+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAP--ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCc--CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 11112224455555555544211 122333455566677888888888888888888875 44566777788888888
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 184 GETYRAEQMLFEMQNNQVR-PNE--RTCGIIVSGYCKEGNMEDAMRFLYRMKE 233 (548)
Q Consensus 184 g~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 233 (548)
|++++|...+++....... ++. ..+..+...+...|++++|..++++...
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8888888888887765322 222 2344677778888888888888888754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-07 Score=89.41 Aligned_cols=89 Identities=10% Similarity=-0.022 Sum_probs=36.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCC-CCH--HHHHHHHHHHHhC
Q 008925 212 VSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVK-PDV--VTFSTIMDAWSSA 288 (548)
Q Consensus 212 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~ 288 (548)
...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++........ ++. ..+..+...+...
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 334444444444444444444432 223333444444444444444444444443332111 111 1222334444444
Q ss_pred CChhHHHHHHHHH
Q 008925 289 GLMGKCQEIFDDM 301 (548)
Q Consensus 289 ~~~~~a~~~~~~~ 301 (548)
|++++|..+++++
T Consensus 200 G~~~~A~~~~~~~ 212 (355)
T cd05804 200 GDYEAALAIYDTH 212 (355)
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444444
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.2e-08 Score=93.90 Aligned_cols=297 Identities=12% Similarity=0.101 Sum_probs=155.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhh
Q 008925 179 AYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDG 258 (548)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 258 (548)
+......|.+|+.+++.+++... -..-|..+...|...|+++.|.++|.+.- .++-.+..|.+.|+|..
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 33445556666666666555422 22334455566666666666666664431 23344556666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 008925 259 VDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRK 338 (548)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (548)
|.++-.+.. ++......|..-..-+-..|++.+|.++|-.+- .|+. .+.+|-+.|..+..+++.++-.-
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 655544332 233334445444555556666666666553322 3443 25566666666666555544321
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--
Q 008925 339 YGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-- 416 (548)
Q Consensus 339 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-- 416 (548)
. .-..+...+..-+-..|+.+.|...|-++-+ |.+-+..|..++.+++|.++-+. .|- .+..
T Consensus 879 d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt---egg-~n~~k~ 942 (1636)
T KOG3616|consen 879 D---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EGG-ANAEKH 942 (1636)
T ss_pred h---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---ccc-ccHHHH
Confidence 1 1123445556666667777777766655443 33445556666666666554332 111 1111
Q ss_pred H---H------HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhccccccccccccccccccccCCCC
Q 008925 417 T---I------QLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEHNGS 487 (548)
Q Consensus 417 ~---~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~ 487 (548)
. | ...+.++.+.|.+++|+...-. ...-.-+-.+.+++....-+..|++++......|+++
T Consensus 943 v~flwaksiggdaavkllnk~gll~~~id~a~d----------~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~e 1012 (1636)
T KOG3616|consen 943 VAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAAD----------NCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFE 1012 (1636)
T ss_pred HHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhc----------ccchhhHHHHHHHhhhccCccchhHHhhhhhhccchh
Confidence 0 0 0112333444444444433221 0011112223333333445667899999999999999
Q ss_pred hhhhhhhhhhccc--ccccchhhhhHHh----hccCCCCCch
Q 008925 488 SAAKIRSQIVLRS--DTVWTATKSLFVN----TYGSGVQPMV 523 (548)
Q Consensus 488 ~a~~~~~~~~~~~--g~~w~~~~~~~~~----~~~~~~~~~~ 523 (548)
+|.+-+-..+..+ ..+|...-..... +.|..|.-++
T Consensus 1013 daskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av 1054 (1636)
T KOG3616|consen 1013 DASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAV 1054 (1636)
T ss_pred hhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHH
Confidence 9999888777777 6777655433222 6666665543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-07 Score=81.44 Aligned_cols=316 Identities=12% Similarity=0.066 Sum_probs=156.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 008925 100 STYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTY-NTLAR 178 (548)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 178 (548)
.-..-+...+...|++..|+.-|...... -+.+-.++.--...|...|+..-|+.-+.+.++. +||-..- ..-..
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 33444555555566666666666555432 1112223333334555556655565555555554 3442221 12223
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhh
Q 008925 179 AYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDG 258 (548)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 258 (548)
.+.+.|.+++|..-|+.+++........ ..++.+.-..++ .......+..+...|+...
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~-----~eaqskl~~~~e----------------~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLV-----LEAQSKLALIQE----------------HWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchh-----HHHHHHHHhHHH----------------HHHHHHHHHHHhcCCchhh
Confidence 4455566666666666555543211000 000000000000 0111223334445566666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 008925 259 VDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRK 338 (548)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (548)
++.....+++.. +.|...+..-..+|...|.+..|+.=++.+.+.. ..+...+.-+-..+...|+.+.++...++.++
T Consensus 174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 666666666543 2355555555566666666666666555555543 33444555555555666666666666666655
Q ss_pred CCCCCCHHH----HHHH---------HHHHhccCChHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHhcCChHHHH
Q 008925 339 YGVHPNVVM----FTTV---------ISGWCNAVKMQRAMSIYEKMCEIGINPN--LK---TYETLLWGYGEAKQPWRAE 400 (548)
Q Consensus 339 ~~~~p~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~---~~~~l~~~~~~~g~~~~A~ 400 (548)
. .||... |..+ +......+++.++++..++.++.. |. .. .+..+-.++...|++.+|+
T Consensus 252 l--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e--p~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 252 L--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE--PEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred c--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC--CcccceeeeeeheeeecccccCCHHHHH
Confidence 3 344321 1111 111234556666666666666542 22 11 2333445555666777777
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 401 ELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 401 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
....+.++. .|+ ..++.--+.+|.-...+++|+.-++++.+.+++.
T Consensus 328 qqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 328 QQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 777766653 454 4466666666666667777777777776655543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-09 Score=99.06 Aligned_cols=97 Identities=16% Similarity=0.073 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 008925 168 PDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPN-LVVFNSL 246 (548)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l 246 (548)
+|..+...|.-.|...|++++|.+.|+.++...+. |...||.|+..++...+.++|+..|+++++. .|. +.++..|
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNl 504 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNL 504 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhh
Confidence 55566666666666666666666666666655433 5566666666666666666666666666664 333 3455566
Q ss_pred HHHHHcCCChhhHHHHHHHHH
Q 008925 247 IKGFLDIKDSDGVDKALTLME 267 (548)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~~ 267 (548)
..+|...|.+++|.+.|-..+
T Consensus 505 gIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHHH
Confidence 666666666666666655433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-09 Score=98.84 Aligned_cols=232 Identities=11% Similarity=0.117 Sum_probs=182.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 008925 212 VSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLM 291 (548)
Q Consensus 212 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 291 (548)
+.-+.+.|++.+|.-.|+..+..+ |-+...|..|.......++-..|+..+++..+..+. +...+..|...|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 445678999999999999998865 667899999999999999999999999999998643 678888899999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHH-------HHHHHcCCHhHHHHHH-HHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 008925 292 GKCQEIFDDMVKAGIEPDIHVFSILA-------KGYVRAGEPQKAESIL-TSMRKYGVHPNVVMFTTVISGWCNAVKMQR 363 (548)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~g~~~~A~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 363 (548)
.+|+..++..+... +|-...-..-. ..+.....+....++| +.....+..+|......|+..|--.|++++
T Consensus 370 ~~Al~~L~~Wi~~~-p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 370 NQALKMLDKWIRNK-PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHhC-ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 99999999987653 22111000000 0111111122333444 334445545788888999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 364 AMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
|+..|+.++... |.|...|+.|+-.+....+..+|+..|+++++ +.|+.. ....|+-+|...|.++||.+.|-.++
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999875 66778899999999999999999999999998 589876 88899999999999999999999999
Q ss_pred hccCCCC
Q 008925 443 EDRQSMP 449 (548)
Q Consensus 443 ~~~~~~~ 449 (548)
.+.+...
T Consensus 526 ~mq~ks~ 532 (579)
T KOG1125|consen 526 SMQRKSR 532 (579)
T ss_pred Hhhhccc
Confidence 7766543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9e-08 Score=94.81 Aligned_cols=423 Identities=10% Similarity=-0.046 Sum_probs=255.7
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008925 9 KPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQ 88 (548)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 88 (548)
+...|+..|-+.++..+. =...|..|+..|....+...|.+.|+++-+.+ +.+..........|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 356677777777765422 23678999999988889999999999988764 4467788889999999999999998843
Q ss_pred HHHhcC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 008925 89 KMKDSG-CKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQ 167 (548)
Q Consensus 89 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 167 (548)
..-+.. ...-...|....-.|.+.++...|+.-|+...+. -|.|...|..++.+|...|++..|+++|.++....
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 332221 0001223444556677888999999999888775 36678899999999999999999999999887753
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------Hh
Q 008925 168 PDA-VTYNTLARAYAQYGETYRAEQMLFEMQNNQ------VRPNERTCGIIVSGYCKEGNMEDAMRFLYRM-------KE 233 (548)
Q Consensus 168 ~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~ 233 (548)
|+. ..--...-.-+..|.+.+|+..+..+.... ...-..++-.+...+.-.|-..+|..++++. ..
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 332 222223334567889999988888765421 1111222222222333333333344433332 22
Q ss_pred CCCCCCHHHHHHHHHHHHcCCC--hhhH----HHH-HHHHHHcCC--------------------CCCHHHHHHHHHHHH
Q 008925 234 LEVHPNLVVFNSLIKGFLDIKD--SDGV----DKA-LTLMEEFGV--------------------KPDVVTFSTIMDAWS 286 (548)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~~~--~~~a----~~~-~~~~~~~~~--------------------~~~~~~~~~l~~~~~ 286 (548)
.....+...|-.+..+|.-.-. ++.. ..+ +.++...+. ..+..+|..++..|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 2212222233222222210000 0000 000 011111111 112233444443333
Q ss_pred h----C----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 008925 287 S----A----GLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA 358 (548)
Q Consensus 287 ~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 358 (548)
+ + .+...|...+...++.. ..+...|+.|.-. ...|++.-|...|-+..... +....+|..+...+...
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEec
Confidence 2 1 12335667777777653 3455566666554 55577777777776655542 33556788888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH--H--HCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008925 359 VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVM--E--EKGVRPKKSTIQLVADSWRAIGLAREA 434 (548)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~--~~~~~p~~~~~~~l~~~~~~~g~~~~A 434 (548)
.+++.|...|.+..... |.|...|..........|+.-++..+|..- . ..|-.|+..-|.+........|+.++-
T Consensus 864 ~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred ccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 99999999999888765 566777877777777788888888887762 2 233446666666666667777776665
Q ss_pred HHHHHHH
Q 008925 435 KRVLKSA 441 (548)
Q Consensus 435 ~~~~~~~ 441 (548)
+...+++
T Consensus 943 I~t~~ki 949 (1238)
T KOG1127|consen 943 INTARKI 949 (1238)
T ss_pred HHHhhhh
Confidence 5555543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.9e-07 Score=78.55 Aligned_cols=304 Identities=12% Similarity=0.074 Sum_probs=183.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH-HHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTS-TYNTLI 106 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~ 106 (548)
++.-...++..+...|++..|+.-|....+.+ +.+-.++..-...|...|+...|+.-|.+.++. +||-. ...--.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34445556666667777777777776665532 212223333445666677777777777776664 45532 122234
Q ss_pred HHHhccCChHHHHHHHHHhhhCCCCCCC-------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008925 107 KGYGNVGKPEESLKLLQLMSQDKNVKPN-------------DRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTY 173 (548)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 173 (548)
..+.+.|.+++|..=|+.+.+....... .......+..+...|+...|+.....+++.. +-|...+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 4566677777777777766654210000 0112334555666778888888888877763 4466666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHH---
Q 008925 174 NTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVF----NSL--- 246 (548)
Q Consensus 174 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l--- 246 (548)
..-..+|...|++..|+.-++...+.... +..++.-+...+...|+.+.++...++.++.+ ||-... ..+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHH
Confidence 67777788888888877777666554332 55666666777777788888887777777643 443211 111
Q ss_pred ------HHHHHcCCChhhHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008925 247 ------IKGFLDIKDSDGVDKALTLMEEFGVKPDVV---TFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILA 317 (548)
Q Consensus 247 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 317 (548)
+......++|.++.+..+...+..+..... .+..+-.++...+++.+|++...+.+... +.|..++.--.
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRA 348 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHH
Confidence 112234456666666666665554332222 23334445566777888888777777664 44577777777
Q ss_pred HHHHHcCCHhHHHHHHHHHHhC
Q 008925 318 KGYVRAGEPQKAESILTSMRKY 339 (548)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~~ 339 (548)
.+|.-...++.|+.-|+.+.+.
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhc
Confidence 7887777888888888877764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.4e-11 Score=75.00 Aligned_cols=49 Identities=39% Similarity=0.765 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 343 PNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYG 391 (548)
Q Consensus 343 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (548)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-07 Score=81.26 Aligned_cols=327 Identities=11% Similarity=0.089 Sum_probs=216.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHh
Q 008925 32 YTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYN-TLIKGYG 110 (548)
Q Consensus 32 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 110 (548)
+...+..+.+..+++.|++++..-.++. +.+......|..+|....++..|-..++++-.. .|...-|. .-...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4556666778889999999999888774 447778888899999999999999999999875 45554443 2456677
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPNDRTYNILVR--AWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYR 188 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 188 (548)
+.+.+..|+.+...|... |+...-..-+. .....+++..+..++++....| +..+.+...-...+.|+++.
T Consensus 90 ~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 889999999999888542 33322222222 3345788888888888876433 56666667667789999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-------------CCH---------------
Q 008925 189 AEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVH-------------PNL--------------- 240 (548)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~--------------- 240 (548)
|.+-|+...+-+--.....|+..+ +..+.|+++.|++...+++++|+. +|+
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999987754332455666544 556789999999999999887642 121
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEF-GVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKG 319 (548)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (548)
..+|.-...+.+.++++.|.+.+..|.-. ....|++|+..+.-.- ..+++.....-+.-++..+ |-...|+..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 12233333456778888888777766422 2345677776664322 2345666666666666664 4556788888888
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHh-ccCChHHHHHHHHHHH
Q 008925 320 YVRAGEPQKAESILTSMRKYGVH-PNVVMFTTVISGWC-NAVKMQRAMSIYEKMC 372 (548)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 372 (548)
|++..-++.|-+++.+-...... .+...|+ ++.++. ..-..++|.+-++.+.
T Consensus 320 yCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 99988888888877653221110 1222232 333332 2345566665555443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-10 Score=74.19 Aligned_cols=49 Identities=41% Similarity=0.803 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 008925 62 PDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYG 110 (548)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (548)
||..+|+.++.+|++.|++++|.++|++|.+.|++||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555556666665555555555555555555554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.8e-07 Score=96.63 Aligned_cols=338 Identities=12% Similarity=0.025 Sum_probs=216.4
Q ss_pred HHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHH
Q 008925 107 KGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGI------QPD--AVTYNTLAR 178 (548)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~ 178 (548)
..+...|+++.+...++.+.... ...+..........+...|+++++..++......-- .+. ......+..
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 34455677777777776653210 111222233445556678999999999988754310 111 122233445
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHH
Q 008925 179 AYAQYGETYRAEQMLFEMQNNQVRPNE----RTCGIIVSGYCKEGNMEDAMRFLYRMKELEV---HP--NLVVFNSLIKG 249 (548)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~ 249 (548)
.+...|++++|...++.........+. ...+.+...+...|++++|...+++...... .+ ...++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 667899999999999988764222221 2345566777889999999999988864311 11 12355666778
Q ss_pred HHcCCChhhHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCC--CHHHHHHHHH
Q 008925 250 FLDIKDSDGVDKALTLMEEF----GVK--P-DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG--IEP--DIHVFSILAK 318 (548)
Q Consensus 250 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~ 318 (548)
+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88999999999988876543 211 1 12334455666778899999999998876531 112 2334555677
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCC-CCHHHH-----HHHHHHHhccCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHH
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVH-PNVVMF-----TTVISGWCNAVKMQRAMSIYEKMCEIGINPNL---KTYETLLWG 389 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~ 389 (548)
.+...|+++.|...++++...... .....+ ...+..+...|+.+.|...+............ ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 888999999999999887542100 111111 11223445688999999988776542211111 124567788
Q ss_pred HHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008925 390 YGEAKQPWRAEELLQVMEEK----GVRPKK-STIQLVADSWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
+...|++++|...++++... |..++. .+...++.++.+.|+.++|...++++.+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 89999999999999988642 333322 356677889999999999999999998544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.2e-07 Score=96.93 Aligned_cols=372 Identities=11% Similarity=-0.024 Sum_probs=231.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 008925 33 TTLVAALTRQKRFKSILSLISKVEKDGMKPDSIL----FNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKG 108 (548)
Q Consensus 33 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (548)
......+...|++.+|....... ++... ...........|+++.+...++.+.......++.........
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a------~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~ 418 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAA------GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHC------CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHH
Confidence 34444555566666655543332 12221 222233445678888877777765321111222233444555
Q ss_pred HhccCChHHHHHHHHHhhhCCCC-----CCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 008925 109 YGNVGKPEESLKLLQLMSQDKNV-----KPN--DRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD----AVTYNTLA 177 (548)
Q Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~-----~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~ 177 (548)
+...|++++|...+......... .+. ......+...+...|++++|...+++....-...+ ....+.+.
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 66789999999988876542110 111 12223344566789999999999999876421112 13456677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHH
Q 008925 178 RAYAQYGETYRAEQMLFEMQNNQV-----RPNERTCGIIVSGYCKEGNMEDAMRFLYRMKEL----EVH--P-NLVVFNS 245 (548)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ 245 (548)
..+...|++++|...+.+...... .....++..+...+...|+++.|...+++.... +.. + ....+..
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 778889999999999988764311 111234556677888999999999998887552 211 1 2234555
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHcC--CCC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHH--HH--HH
Q 008925 246 LIKGFLDIKDSDGVDKALTLMEEFG--VKP--DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG--IEPDIH--VF--SI 315 (548)
Q Consensus 246 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~ 315 (548)
+...+...|++++|...+....... ..+ ....+..+.......|+.+.|...+..+.... ...... .. ..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 6667778899999999988765531 112 23345556667889999999999998886421 111111 10 11
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCCC-HHHHHHHH
Q 008925 316 LAKGYVRAGEPQKAESILTSMRKYGVHPN---VVMFTTVISGWCNAVKMQRAMSIYEKMCEI----GINPN-LKTYETLL 387 (548)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~ 387 (548)
.+..+...|+.+.|...+........... ...+..+..++...|+.++|...++++... |..++ ..+...+.
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 22445568999999999877654211111 112345677788899999999999998763 32222 24567778
Q ss_pred HHHHhcCChHHHHHHHHHHHHCC
Q 008925 388 WGYGEAKQPWRAEELLQVMEEKG 410 (548)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~ 410 (548)
.++.+.|+.++|...+.++.+..
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 88999999999999999998643
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.8e-09 Score=94.00 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=68.3
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCC
Q 008925 285 WSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN----AVK 360 (548)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 360 (548)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++.. ...
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 34445555555544321 234444445555555555555555555555431 12 222223333221 123
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 008925 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLA-REAKRVLK 439 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 439 (548)
+.+|.-+|+++.+. .++++.+++.++.++...|++++|.+.+++..+.+ +-++.++.+++-+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 55555555555443 24455555555555555555555555555554322 11233555555555555554 44445555
Q ss_pred HHHhccC
Q 008925 440 SAEEDRQ 446 (548)
Q Consensus 440 ~~~~~~~ 446 (548)
++....|
T Consensus 261 qL~~~~p 267 (290)
T PF04733_consen 261 QLKQSNP 267 (290)
T ss_dssp HCHHHTT
T ss_pred HHHHhCC
Confidence 5444333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-06 Score=87.66 Aligned_cols=391 Identities=14% Similarity=0.165 Sum_probs=221.5
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHH---HHH------HHHH-----------CC------
Q 008925 7 KGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKR-FKSILS---LIS------KVEK-----------DG------ 59 (548)
Q Consensus 7 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~---~~~------~~~~-----------~~------ 59 (548)
.++..--...++..++.|.. +..++|.|...|..+++ ++.-++ .|+ -..+ +|
T Consensus 851 RNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~el 929 (1666)
T KOG0985|consen 851 RNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLEL 929 (1666)
T ss_pred hhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHH
Confidence 34455556667777777765 88899999998876543 332211 011 1111 11
Q ss_pred --CCCCHHHHHHHHHHHHhcCChH---HH--------HHHHHHHHhcCCC--CCHHHHHHHHHHHhccCChHHHHHHHHH
Q 008925 60 --MKPDSILFNAMINACSESGNVD---EA--------MKIFQKMKDSGCK--PTTSTYNTLIKGYGNVGKPEESLKLLQL 124 (548)
Q Consensus 60 --~~~~~~~~~~l~~~~~~~g~~~---~A--------~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 124 (548)
+......|..+.+.+.+..+.+ +. ++++++..+.+++ .|+......+.++...+-+.+-++++++
T Consensus 930 I~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEK 1009 (1666)
T KOG0985|consen 930 INVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEK 1009 (1666)
T ss_pred HHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 1112234555555555555533 22 3566777665543 3667777888999999999999999999
Q ss_pred hhhCCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 008925 125 MSQDKNVKPNDRT-YNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNN---- 199 (548)
Q Consensus 125 ~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 199 (548)
+.-++..-..... -|.|+-.. -.-+.....++.+++-.-. .|+ +...+...+-+++|..+|+...-.
T Consensus 1010 IvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~ 1081 (1666)
T KOG0985|consen 1010 IVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAI 1081 (1666)
T ss_pred HhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHH
Confidence 8754332222222 23333222 2334445555555554332 111 222333344445555555433110
Q ss_pred ------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHH
Q 008925 200 ------------------QVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDK 261 (548)
Q Consensus 200 ------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 261 (548)
.+ -.+.+|..+..+-.+.|...+|++-|-+ ..|+..|..++....+.|.+++..+
T Consensus 1082 ~VLie~i~~ldRA~efAe~~-n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1082 QVLIENIGSLDRAYEFAERC-NEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred HHHHHHhhhHHHHHHHHHhh-CChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHH
Confidence 00 1345566666666666666666555433 2355566666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC
Q 008925 262 ALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGV 341 (548)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 341 (548)
.+....+..-.|... +.++-+|++.+++.+.+++.. .|+......++.-|...|.++.|.-++...
T Consensus 1155 yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----- 1220 (1666)
T KOG0985|consen 1155 YLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV----- 1220 (1666)
T ss_pred HHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh-----
Confidence 666555554334332 345556666666655444432 455555556666666666666665555432
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008925 342 HPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLV 421 (548)
Q Consensus 342 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 421 (548)
.-|..|...+...|++..|...-+++ .+..||..+-.+|...+.+.-| +|--.++....+-+..+
T Consensus 1221 ----SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeel 1285 (1666)
T KOG0985|consen 1221 ----SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEEL 1285 (1666)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHH
Confidence 33555666666667766666544433 3556777777777776655433 23333344566778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 008925 422 ADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~ 442 (548)
+..|...|-++|-+.+++..+
T Consensus 1286 i~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1286 IEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHhhh
Confidence 889999999999999998865
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-06 Score=83.87 Aligned_cols=384 Identities=15% Similarity=0.142 Sum_probs=219.9
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-C--------CCCCHHHHHHHHHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKD-G--------MKPDSILFNAMINA 73 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~~~ 73 (548)
.|..-|+.+.|.+-.+.+. +...|..+.+.|.+..+++-|.-.+-.|... | -.|+ ..=......
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 4667788888888777653 4567899999998888877776655555321 0 0121 122223334
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 008925 74 CSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEE 153 (548)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (548)
....|-+++|+.+|.+-++ |..|=..|...|.+++|.++-+.-.+ + .=-.||......+-..++.+.
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DR---i-HLr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDR---I-HLRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccc---e-ehhhhHHHHHHHHHhhccHHH
Confidence 4577889999999988765 34455667788999999888765322 1 122466666777777888888
Q ss_pred HHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 154 AWNVVYKM----------VASG---------IQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSG 214 (548)
Q Consensus 154 a~~~~~~~----------~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (548)
|+++|++. +... -..|...|.-.....-..|+.+.|+.+|....+ |..++..
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI 947 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRI 947 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheee
Confidence 88888763 1111 011233344444444556666666666655432 3345555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCC------CCCHHHHHHHHHHHH--
Q 008925 215 YCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGV------KPDVVTFSTIMDAWS-- 286 (548)
Q Consensus 215 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~-- 286 (548)
.|-.|+.++|-++-++ .-|......+...|-..|++.+|...|.+...... ..|. -..|...+.
T Consensus 948 ~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L~nlal~s 1019 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRLANLALMS 1019 (1416)
T ss_pred EeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHhhc
Confidence 5566777776665544 23556666777777777777777777765443210 0000 001111111
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH--------H--hCCCCCCHHHHHHHHHHHh
Q 008925 287 SAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSM--------R--KYGVHPNVVMFTTVISGWC 356 (548)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~--~~~~~p~~~~~~~l~~~~~ 356 (548)
...+.-.|-.+|++.- . -....+..|-+.|.+.+|+++--+- + +.+...|+...+.....++
T Consensus 1020 ~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~ 1091 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFE 1091 (1416)
T ss_pred CchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 1112223333333321 0 1122344566777777766543211 1 1223346677777888888
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCC----HHHHHHHHHHHHHcCCH
Q 008925 357 NAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME-EKGVRPK----KSTIQLVADSWRAIGLA 431 (548)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~----~~~~~~l~~~~~~~g~~ 431 (548)
...++++|..++-.+.+. ..-+..|.. .+..-..++-+.|. .++-.|+ ...+..++++|.++|.+
T Consensus 1092 ~~~qyekAV~lL~~ar~~---------~~AlqlC~~-~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Y 1161 (1416)
T KOG3617|consen 1092 NNQQYEKAVNLLCLAREF---------SGALQLCKN-RNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAY 1161 (1416)
T ss_pred hHHHHHHHHHHHHHHHHH---------HHHHHHHhc-CCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccch
Confidence 888888888887776652 223333333 33343444444443 2212233 23677888999999999
Q ss_pred HHHHHHHHHH
Q 008925 432 REAKRVLKSA 441 (548)
Q Consensus 432 ~~A~~~~~~~ 441 (548)
..|.+-|.++
T Consensus 1162 h~AtKKfTQA 1171 (1416)
T KOG3617|consen 1162 HAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHhhh
Confidence 9888877764
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.3e-06 Score=75.70 Aligned_cols=421 Identities=13% Similarity=0.088 Sum_probs=254.9
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 008925 19 CLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT 98 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 98 (548)
+-++.++ -|+.+|+.|++-+..+ -.+++++.++++... ++..+..|..-+..-...++++...++|.+.+.. ..+
T Consensus 11 ~rie~nP-~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLn 85 (656)
T KOG1914|consen 11 ERIEENP-YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLN 85 (656)
T ss_pred HHHhcCC-ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--Hhh
Confidence 3344444 4889999999987666 999999999999876 5667789999999999999999999999998775 345
Q ss_pred HHHHHHHHHHHhc-cCCh----HHHHHHHHHhhhCCCCCCC-HHHHHHHHHH---------HHhCCCHHHHHHHHHHHHH
Q 008925 99 TSTYNTLIKGYGN-VGKP----EESLKLLQLMSQDKNVKPN-DRTYNILVRA---------WCSKNSIEEAWNVVYKMVA 163 (548)
Q Consensus 99 ~~~~~~l~~~~~~-~g~~----~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~---------~~~~g~~~~a~~~~~~~~~ 163 (548)
...|...+.--.+ .|+. +...+.|+-.....|+.+- ...|+..+.. |....+++...++|++++.
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 6667666653322 2222 2233444444444443332 2334444433 2333456677788888876
Q ss_pred CCCCC------CHHHHHHHHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHH---------------HHHHHHH
Q 008925 164 SGIQP------DAVTYNTLARAY-------AQYGETYRAEQMLFEMQN--NQVRPNER---------------TCGIIVS 213 (548)
Q Consensus 164 ~~~~~------~~~~~~~l~~~~-------~~~g~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~l~~ 213 (548)
.-+.- |-..|..=++.. -+...+..|..+++++.. .|...... .|..+|.
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 42211 111222111111 123456677777777643 12211111 1222222
Q ss_pred HHHhc------CCH--HHHHHHHHHH-HhCCCCCCHHHHH-H----HHHHHHcCCC-------hhhHHHHHHHHHHcCCC
Q 008925 214 GYCKE------GNM--EDAMRFLYRM-KELEVHPNLVVFN-S----LIKGFLDIKD-------SDGVDKALTLMEEFGVK 272 (548)
Q Consensus 214 ~~~~~------g~~--~~A~~~~~~~-~~~~~~~~~~~~~-~----l~~~~~~~~~-------~~~a~~~~~~~~~~~~~ 272 (548)
.=... |.. ....-.+++. .-.+..|+..-.. . ....+...|+ .+++.++++.....-..
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~ 325 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK 325 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 11111 111 1111122222 2222333332111 1 1112223333 34455566655543323
Q ss_pred CCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-CHHHH
Q 008925 273 PDVVTFSTIMDAWSSAG---LMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHP-NVVMF 348 (548)
Q Consensus 273 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~ 348 (548)
-+..+|..+.+.-...- ..+....++.++...-...-..+|..++..-.+..-++.|..+|.++.+.+..+ ++...
T Consensus 326 ~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa 405 (656)
T KOG1914|consen 326 ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVA 405 (656)
T ss_pred HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHH
Confidence 33344444333222222 255666677776654222223468888888888888999999999999877666 66778
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHH
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK--STIQLVADSWR 426 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~ 426 (548)
++++.-+|. ++..-|.++|+-=++. +..++......+.-+.+.++-..|..+|++.+..++.|+. .+|..+++-=.
T Consensus 406 ~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES 483 (656)
T KOG1914|consen 406 AALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYES 483 (656)
T ss_pred HHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHH
Confidence 888888775 7889999999987764 2445555667788888999999999999999988777664 59999999999
Q ss_pred HcCCHHHHHHHHHHHHhccC
Q 008925 427 AIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~~ 446 (548)
.-|++..+.++-++.....+
T Consensus 484 ~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 484 NVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hcccHHHHHHHHHHHHHhcc
Confidence 99999999999888775444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-08 Score=92.10 Aligned_cols=252 Identities=13% Similarity=0.092 Sum_probs=138.8
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008925 147 SKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMR 226 (548)
Q Consensus 147 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 226 (548)
-.|++..++.-.+ .....-+.+......+.+++...|+++.++ .++.... .|.......+...+...++-+.++.
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 3455555554444 111111112233344556666666655433 2332222 4444444444444433344445544
Q ss_pred HHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 008925 227 FLYRMKELEVH-PNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG 305 (548)
Q Consensus 227 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (548)
-+++....... .+..........+...|++++|.+++... .+.......+.++.+.++++.|.+.++.|.+.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44444332222 12233333334455667777776665432 345666667777888888888888888877642
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHH
Q 008925 306 IEPDIHVFSILAKGYVR----AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLK 381 (548)
Q Consensus 306 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 381 (548)
.| .+...+..++.. ...+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.++++++.+.+ +.++.
T Consensus 162 --eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d 236 (290)
T PF04733_consen 162 --ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPD 236 (290)
T ss_dssp --CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHH
T ss_pred --Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHH
Confidence 33 233334443332 23578888888887654 45677778888888888888888888888877654 55667
Q ss_pred HHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHH
Q 008925 382 TYETLLWGYGEAKQP-WRAEELLQVMEEKGVRPKKS 416 (548)
Q Consensus 382 ~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~ 416 (548)
++..++.+....|+. +.+.+++.++... .|+..
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h~ 270 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNHP 270 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTSH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCCh
Confidence 777888877788877 5566777777653 45544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.7e-07 Score=88.89 Aligned_cols=385 Identities=12% Similarity=-0.016 Sum_probs=244.5
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 008925 44 RFKSILSLISKVEKDGMKPD-SILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLL 122 (548)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 122 (548)
+...|...|=+..+. .++ ...|..|...|....+...|.+.|+++.+.+ ..+...+......|++..+++.|..+.
T Consensus 473 ~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 455666666555554 333 5689999999988889999999999998764 346678889999999999999999885
Q ss_pred HHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008925 123 QLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR 202 (548)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 202 (548)
-...+......-...|....-.|.+.++...|+..|+...+.. |.|...|..++.+|...|.+..|.++|.++....+.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 4443321111112334445557788899999999999998875 567889999999999999999999999988765332
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCC-HHHHHHHHHHHHcCCChhhHHHHHHH-------HHHc
Q 008925 203 PNERTCGIIVSGYCKEGNMEDAMRFLYRMKELE-----VHPN-LVVFNSLIKGFLDIKDSDGVDKALTL-------MEEF 269 (548)
Q Consensus 203 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~~ 269 (548)
+...-.-....-+..|.+.+|+..+...+... ...+ ..++..+...+...|-..++...++. ....
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 22222333445677899999998888775421 0111 12222222222222222222222222 2222
Q ss_pred CCCCCHHHHHHHHHHHH-----------------------hCCCh---h---HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 270 GVKPDVVTFSTIMDAWS-----------------------SAGLM---G---KCQEIFDDMVKAGIEPDIHVFSILAKGY 320 (548)
Q Consensus 270 ~~~~~~~~~~~l~~~~~-----------------------~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (548)
....+...|..+.++|. ..+.. + .+.+.+-..++. ..++.+|..|+..|
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMYPWYNLGINY 785 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccchHHHHhHHH
Confidence 11112222322222221 11111 1 111111111111 22344555555554
Q ss_pred HH----cC----CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 321 VR----AG----EPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 321 ~~----~g----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
.+ .| +...|+..+.+..+.. ..+...|+.|... ...|++.-|...|-+..... +.+..+|..+...+..
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEe
Confidence 43 22 3346778888777653 2356678877766 67788988888888887764 6678889999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008925 393 AKQPWRAEELLQVMEEKGVRPKK-STIQLVADSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 393 ~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (548)
..+++.|...|...... .|+. ..|...+.+....|+.-++..+|.-
T Consensus 863 n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999999988763 4543 3665555666677888888888776
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.7e-07 Score=82.82 Aligned_cols=204 Identities=9% Similarity=-0.055 Sum_probs=103.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh--hHH
Q 008925 218 EGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIK-DSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLM--GKC 294 (548)
Q Consensus 218 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a 294 (548)
.+..++|+.+..+++... +.+..+|+.....+...+ ++++++..++.+.+.+++ +..+|+....++.+.|+. +.+
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence 344455555555555432 233344444444444444 345555555555554432 333444444444444432 445
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---CC----hHHHHHH
Q 008925 295 QEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA---VK----MQRAMSI 367 (548)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~ 367 (548)
..+++.+++.+ +.+..+|+....++...|+++++++.++++++.++ -|..+|+.....+.+. |. .++++.+
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 55665666554 44555666666666666666666666666666542 2444555444444332 11 2345555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008925 368 YEKMCEIGINPNLKTYETLLWGYGEA----KQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRA 427 (548)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 427 (548)
..+++... |-|...|+.+...+... +...+|.+++.+..+.+ ..+...+..+++.++.
T Consensus 206 ~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 65666554 45556666666666552 23345666666655432 1233355666666654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-06 Score=80.37 Aligned_cols=203 Identities=9% Similarity=-0.033 Sum_probs=112.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh--hhHH
Q 008925 184 GETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEG-NMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDS--DGVD 260 (548)
Q Consensus 184 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~ 260 (548)
+..++|+.+..++++..+. +..+|+....++...| ++++++..++++...+ +.+..+|+.....+.+.++. +++.
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHH
Confidence 4445555555555544222 3334444444444444 4566666666665543 34444555444444444432 4455
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CC----HhHHHHHH
Q 008925 261 KALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRA---GE----PQKAESIL 333 (548)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~ 333 (548)
..++.+.+..++ +..+|+....++...|+++++++.+.++++.+ +.+..+|+....++.+. |. .++++.+.
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 566566655433 55666666666666667777777777776665 44555565555544443 22 23566666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 334 TSMRKYGVHPNVVMFTTVISGWCNA----VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 334 ~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
.+++... +-|...|+.+...+... +...+|.+.+.+....+ +.+...+..|+..|+.
T Consensus 207 ~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 6666543 23455677777666652 34456777777766654 4566677777777765
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.4e-07 Score=90.87 Aligned_cols=199 Identities=15% Similarity=0.198 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPD-----SILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNT 104 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 104 (548)
..|-..+....+.++.+.|++++++++.. +.+. ...|.++++.-..-|.-+...++|+++.+.. ..-..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 44445555555555555555555554432 1111 1244444444444444455555555554431 11223444
Q ss_pred HHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 008925 105 LIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD---AVTYNTLARAYA 181 (548)
Q Consensus 105 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 181 (548)
|...|.+.+..++|.++++.|.+.. ......|...+..+.+.++-+.|..++.++++. -|. .......+..-.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF--~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKF--GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHh--cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 5555555555555555555554432 233444555555555555555555555554443 121 112222333334
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008925 182 QYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEV 236 (548)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 236 (548)
+.|+.+.+..+|+..+...++ ....|+..+.+-.+.|+.+.+..+|++++..++
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 445555555555544443222 334445555554555555555555555544443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.4e-07 Score=88.09 Aligned_cols=215 Identities=10% Similarity=0.041 Sum_probs=153.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008925 172 TYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFL 251 (548)
Q Consensus 172 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (548)
.-..+...+...|-...|..+++++ ..|..++.+|+..|+..+|..+..+-.+ .+|++..|..++....
T Consensus 400 ~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence 3345667777788888888887765 3456677788888888888888877776 3677777777777766
Q ss_pred cCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 008925 252 DIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAES 331 (548)
Q Consensus 252 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 331 (548)
+..-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|..+..+..+.++++.|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 666666666666543322 11112222234677888888888777765 5667788888888888888888888
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 332 ILTSMRKYGVHPN-VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 332 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
.|...... .|| ...||++-.+|.+.|+-.+|...+.++.+.+ .-+...|.+........|.+++|++.++++.+
T Consensus 541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 88877764 454 4478888888888888888888888888776 55566676667777788888888888888764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-06 Score=84.41 Aligned_cols=222 Identities=15% Similarity=0.130 Sum_probs=180.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008925 132 KPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGII 211 (548)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 211 (548)
+|--..-..+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+..++ +||+..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 4444455677888889999999999998764 4667888999999999999999888873 6788888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 008925 212 VSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLM 291 (548)
Q Consensus 212 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 291 (548)
+......--+++|.+++++... .+-..+.....+.+++.++.+.++.-.+.+ +.-..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 8877777778888888876543 233333344455789999999999887765 33567888888888999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 008925 292 GKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKM 371 (548)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 371 (548)
+.|.+.|...+... |.+...||.+-.+|.+.++..+|...+.+..+.+ .-+...|.+.+....+.|.+++|++.+.++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999999999874 5567799999999999999999999999999987 446678888888889999999999999999
Q ss_pred HHc
Q 008925 372 CEI 374 (548)
Q Consensus 372 ~~~ 374 (548)
.+.
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 864
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.5e-06 Score=78.32 Aligned_cols=383 Identities=15% Similarity=0.125 Sum_probs=184.2
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008925 7 KGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKI 86 (548)
Q Consensus 7 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 86 (548)
..++.+|+.+++.+..... ..--|..+...|...|+++.|.++|-+. ..++-.|..|.+.|+++.|.++
T Consensus 745 akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHH
Confidence 3344444444444433211 1122444455555555555555555432 1233445555555555555555
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 008925 87 FQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGI 166 (548)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 166 (548)
-++... .......|..-..-+-+.|++.+|+++|-.+. .|+ ..+..|-+.|..+..+++..+-...
T Consensus 814 a~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h~d-- 879 (1636)
T KOG3616|consen 814 AEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD-- 879 (1636)
T ss_pred HHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhChh--
Confidence 444322 12233344444444445555555555554331 222 2344455555555555555443211
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--------------H
Q 008925 167 QPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRM--------------K 232 (548)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------------~ 232 (548)
.-..|...+..-+-..|+...|...|-+.. -|...+++|...+-|++|-++-+.- .
T Consensus 880 -~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwak 949 (1636)
T KOG3616|consen 880 -HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAK 949 (1636)
T ss_pred -hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHH
Confidence 113455556667777788777777664432 2444556666666666665543321 1
Q ss_pred hCCCCCCHHHH------HHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 008925 233 ELEVHPNLVVF------NSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI 306 (548)
Q Consensus 233 ~~~~~~~~~~~------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (548)
+.|-..-+... ..-+...+..+.++-|..+-+...+.. .|. ....+...+...|++++|-+.|-+.++.+.
T Consensus 950 siggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 950 SIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred hhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 11100000111 111222233344444444444333321 111 222344456678899999888887776531
Q ss_pred C--------CCHHHH---------HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCChHHHHHH
Q 008925 307 E--------PDIHVF---------SILAKGYVRAGEPQKAESILTSMRKYGVHPN--VVMFTTVISGWCNAVKMQRAMSI 367 (548)
Q Consensus 307 ~--------~~~~~~---------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 367 (548)
- |+..-. ...+.++.+..+|..|.++-+.-. |+ ...+..-.+.....|++.+|..+
T Consensus 1027 ynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~-----~~~l~dv~tgqar~aiee~d~~kae~f 1101 (1636)
T KOG3616|consen 1027 YNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHC-----EDLLADVLTGQARGAIEEGDFLKAEGF 1101 (1636)
T ss_pred ccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhC-----hhhhHHHHhhhhhccccccchhhhhhh
Confidence 0 111000 011234455555555555543321 22 22344445555667777777776
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----------------HHCCCCCCHHHHHHHHHHHHHcCCH
Q 008925 368 YEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVM----------------EEKGVRPKKSTIQLVADSWRAIGLA 431 (548)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------~~~~~~p~~~~~~~l~~~~~~~g~~ 431 (548)
+-++. .|+.. ++-|...+.+..|+++.+.. .+.| .-....+..-+.-+-++|++
T Consensus 1102 llran----kp~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~g-argvd~fvaqak~weq~gd~ 1171 (1636)
T KOG3616|consen 1102 LLRAN----KPDIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKG-ARGVDGFVAQAKEWEQAGDW 1171 (1636)
T ss_pred eeecC----CCchH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHhcccH
Confidence 65543 45532 33444555555555554322 1222 22334555556778888999
Q ss_pred HHHHHHHHHHH
Q 008925 432 REAKRVLKSAE 442 (548)
Q Consensus 432 ~~A~~~~~~~~ 442 (548)
.+|...+-+..
T Consensus 1172 rkav~~~lkin 1182 (1636)
T KOG3616|consen 1172 RKAVDALLKIN 1182 (1636)
T ss_pred HHHHHHHhhhc
Confidence 99988887764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-06 Score=83.25 Aligned_cols=336 Identities=15% Similarity=0.106 Sum_probs=177.4
Q ss_pred CHHHHHHHHH--HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCC--------C
Q 008925 63 DSILFNAMIN--ACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNV--------K 132 (548)
Q Consensus 63 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~ 132 (548)
|..+...+++ .|...|+.+.|.+-.+-++ +...|..+.+.+.+..+++-|.-.+-.|....|. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4455555553 3455666666666665554 2346666666666666666555544444321110 1
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008925 133 PNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIV 212 (548)
Q Consensus 133 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 212 (548)
|+ .+-....-.....|.+++|..+|++..+ |..|=..|...|.+++|.++-+.-..... ..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 11 1111122223455667777777666543 23344456666777777666543222111 23444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHh----------CC---------CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCC
Q 008925 213 SGYCKEGNMEDAMRFLYRMKE----------LE---------VHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKP 273 (548)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~~~~----------~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 273 (548)
.-+-..+|.+.|++.|++.-. .. ...|...|.-....+-..|+.+.|+.++.....
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 555556666666666654311 00 012334444455555566666666666655443
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC------CCCCHHH
Q 008925 274 DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYG------VHPNVVM 347 (548)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~ 347 (548)
|-.+.+..|-.|+.++|-++-++ .-|..+...|.+.|-..|++.+|...|.++.... ...| .
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd--~ 1008 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND--M 1008 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC--H
Confidence 33455556667777777766553 3466677778888888888888888887765310 0000 0
Q ss_pred HHHHHHHH--hccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------HHHHCCC--CCCH
Q 008925 348 FTTVISGW--CNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQ--------VMEEKGV--RPKK 415 (548)
Q Consensus 348 ~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~--~p~~ 415 (548)
-..|...+ ....+.-.|-++|++.- . .+..-+..|-+.|.+.+|+++-= +++..++ ..|+
T Consensus 1009 ~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1009 KDRLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred HHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 01111111 12223334444444321 0 11223445667777777766421 1222223 3457
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 416 STIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 416 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
..++.-++.+....++++|..++-.+.
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 788888888888888888888876654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.6e-07 Score=74.79 Aligned_cols=158 Identities=15% Similarity=0.058 Sum_probs=116.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 008925 279 STIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA 358 (548)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 358 (548)
..+-..+...|+-+....+........ +.|......++....+.|++..|...|+++.... ++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 455566667777777777766655432 5566666677788888888888888888877653 56777888888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008925 359 VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVL 438 (548)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 438 (548)
|+.++|..-|.++.+.. +.++..++.|...+.-.|+.+.|..++......+ .-+..+-.+++.+....|++++|+++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888888888888764 4566777788888888888888888888777643 235567777788888888888888776
Q ss_pred HH
Q 008925 439 KS 440 (548)
Q Consensus 439 ~~ 440 (548)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 65
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-06 Score=78.48 Aligned_cols=186 Identities=11% Similarity=-0.001 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH---H
Q 008925 238 PNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVK-PD-VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIH---V 312 (548)
Q Consensus 238 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~ 312 (548)
.....+..++..+...|+++.|...++.+....+. |. ...+..+..++...|++++|...++.+++.. +.+.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 34456666666677777777777777766664321 11 1345556666677777777777777776553 21221 3
Q ss_pred HHHHHHHHHHc--------CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHH
Q 008925 313 FSILAKGYVRA--------GEPQKAESILTSMRKYGVHPNVV-MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTY 383 (548)
Q Consensus 313 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 383 (548)
+..+..++... |++++|.+.++.+.+. .|+.. .+..+..... ... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~-------~~-------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN-------RL-------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH-------HH-------HHHH
Confidence 44445555443 5566666666666654 23322 2111111000 000 00 0011
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008925 384 ETLLWGYGEAKQPWRAEELLQVMEEKGV-RP-KKSTIQLVADSWRAIGLAREAKRVLKSAEED 444 (548)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (548)
..+...+.+.|++++|+..+++..+... .| ....+..++.++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2466778899999999999999986421 23 2457888999999999999999998886544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-06 Score=74.74 Aligned_cols=119 Identities=11% Similarity=0.072 Sum_probs=85.9
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCC--hHHH
Q 008925 288 AGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGW-CNAVK--MQRA 364 (548)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 364 (548)
.++.+++...++..++.+ +.+...|..++..|...|++++|...|+++.+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455667777777777665 6677778888888888888888888888777754 23555666666653 55565 4788
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 365 MSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
.++++++++.+ +.+...+..++..+...|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888888765 556677777777888888888888888887764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.7e-06 Score=85.95 Aligned_cols=207 Identities=13% Similarity=0.039 Sum_probs=117.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCH
Q 008925 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT-----TSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPND 135 (548)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 135 (548)
|.+...|...|......++.++|++++++++.. +.+. ...|.+++..-...|.-+...++|+++.+- ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~ 1530 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAY 1530 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchH
Confidence 334556666666667777777777777766653 2111 234555555555556666666666666552 2223
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Q 008925 136 RTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR-PNERTCGIIVSG 214 (548)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 214 (548)
..|..|...|.+.+..++|.++++.|.+.- ......|...+..+.+..+-+.|..++.+.++.-++ .........+..
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 455666666666666666666666666542 234556666666666666666666666665554221 012223333444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCC
Q 008925 215 YCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKP 273 (548)
Q Consensus 215 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 273 (548)
-.+.|+.+.+..+|+..+... |.-...|+..+..-.++|+.+.+..+|+++...++.|
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 455666666666666655432 3444556666666666666666666666665555443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.4e-06 Score=72.43 Aligned_cols=163 Identities=10% Similarity=0.044 Sum_probs=122.6
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 239 NLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAK 318 (548)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (548)
|... ..+...+...|+-+....+........ +.|.......+....+.|++..|...++++.... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3344 566667777777777777766654432 3355666667888888888888888888888776 788888888888
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWR 398 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (548)
+|.+.|+.+.|..-|.+..+.. .-+....+.+.-.+.-.|+.+.|..++......+ +-|...-..|..+....|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 8888888888888888888752 2245567888888888888888888888888764 4467777788888888888888
Q ss_pred HHHHHHHH
Q 008925 399 AEELLQVM 406 (548)
Q Consensus 399 A~~~~~~~ 406 (548)
|..+...-
T Consensus 221 A~~i~~~e 228 (257)
T COG5010 221 AEDIAVQE 228 (257)
T ss_pred HHhhcccc
Confidence 88766543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.5e-05 Score=75.37 Aligned_cols=358 Identities=15% Similarity=0.188 Sum_probs=194.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDG--MKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTL 105 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 105 (548)
|+......+.++...+-..+.+++++++.-.+ +..+...-+.|+-...+ -+.....+..+++.... .| .+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~------~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP------DI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch------hH
Confidence 33444555666666666666666666664321 11122233333333333 23344455555544321 11 12
Q ss_pred HHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008925 106 IKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGE 185 (548)
Q Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 185 (548)
.......+-+++|..+|++.. .+....+.|+.- .+..+.|.++-++. ..+..|..+..+-.+.|.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~------~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD------MNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCc
Confidence 333444555677777766542 244444444432 34555555544442 245678888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 008925 186 TYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTL 265 (548)
Q Consensus 186 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 265 (548)
..+|.+-|-+. .|+..|..++....+.|.+++-.+++..+.+....|.. =+.++-+|++.++..+.++.+
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh--
Confidence 88887766543 26778888888888888888888888777765544443 346777788777765544332
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh-------
Q 008925 266 MEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRK------- 338 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 338 (548)
.-|+......+.+-|...+.++.|.-+|... ..|..|...+...|+++.|.+.-+++..
T Consensus 1190 -----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~V 1255 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEV 1255 (1666)
T ss_pred -----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 2356666677777777777777777666533 3355566666666666666544433321
Q ss_pred -----------------CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 339 -----------------YGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEE 401 (548)
Q Consensus 339 -----------------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (548)
.++-....-...++..|...|-+++-+.+++..+... ....-.|+.|.-.|++- ++++..+
T Consensus 1256 cfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~E 1333 (1666)
T KOG0985|consen 1256 CFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMME 1333 (1666)
T ss_pred HHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHH
Confidence 1111122334445555556666666666665554321 22233455555555443 3455555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008925 402 LLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (548)
.++-...+ .+ .-.+++++-.+..|.|..=++.+
T Consensus 1334 Hl~LFwsR---vN---ipKviRA~eqahlW~ElvfLY~~ 1366 (1666)
T KOG0985|consen 1334 HLKLFWSR---VN---IPKVIRAAEQAHLWSELVFLYDK 1366 (1666)
T ss_pred HHHHHHHh---cc---hHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444321 11 11244555555555555554444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.4e-07 Score=71.14 Aligned_cols=92 Identities=10% Similarity=-0.007 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008925 315 ILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK 394 (548)
Q Consensus 315 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 394 (548)
.+...+...|++++|...|+.+.... +.+...|..++.++...|++++|+..|+++.+.. +.+...+..++.++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34444455555555555555554432 2234444555555555555555555555555443 344455555555555555
Q ss_pred ChHHHHHHHHHHHH
Q 008925 395 QPWRAEELLQVMEE 408 (548)
Q Consensus 395 ~~~~A~~~~~~~~~ 408 (548)
++++|+..|+..++
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-06 Score=74.91 Aligned_cols=185 Identities=13% Similarity=0.016 Sum_probs=119.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH---HH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDS---ILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTT---ST 101 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~ 101 (548)
....+..++..+...|+++.|...|+++.... +.+. ..+..+..++...|++++|+..++++.+... .+. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchHHH
Confidence 45667777788888888888888888887653 2222 3566777788888888888888888876521 111 24
Q ss_pred HHHHHHHHhcc--------CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008925 102 YNTLIKGYGNV--------GKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTY 173 (548)
Q Consensus 102 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 173 (548)
+..+..++... |+.++|.+.|+.+.... +.+...+..+..... ... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~-------~~-------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN-------RL-------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH-------HH-------HHHH
Confidence 45555555543 66777888888776642 222222222211100 000 00 0111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 174 NTLARAYAQYGETYRAEQMLFEMQNNQVR--PNERTCGIIVSGYCKEGNMEDAMRFLYRMKEL 234 (548)
Q Consensus 174 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 234 (548)
..+...+...|++.+|...++...+.... .....+..++.++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 24667788999999999999998876432 23567888899999999999999988887664
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=4e-06 Score=71.47 Aligned_cols=123 Identities=9% Similarity=0.156 Sum_probs=71.4
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCC--HhHHH
Q 008925 254 KDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGY-VRAGE--PQKAE 330 (548)
Q Consensus 254 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~ 330 (548)
++.+++...++...+.+ +.+...|..+...|...|+++.|...|+++.+.. +.+...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34445555555555543 2355666666666666666666666666666654 44555666666543 45555 36666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 008925 331 SILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL 380 (548)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (548)
.++++..+.+ +.+...+..+...+...|++++|+..|+++++.. +|+.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~ 178 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRV 178 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 6666666653 2244556666666666666666666666666654 4443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.6e-05 Score=65.40 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=91.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--
Q 008925 280 TIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN-- 357 (548)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 357 (548)
.-+..|.+.+++++|++..... .+......=+..+.+..+.+-|.+.+++|.+. .+..+.+.|..+|.+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la 183 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLA 183 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHh
Confidence 3344566667777776665541 12222222234455566666777777777653 244555555555543
Q ss_pred --cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-H
Q 008925 358 --AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLARE-A 434 (548)
Q Consensus 358 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A 434 (548)
.+.+.+|.-+|++|.+.- +|+..+.+..+.++...|++++|..+++.++.+. ..+++++.+++-+-...|...+ -
T Consensus 184 ~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred ccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHH
Confidence 344667777777776642 6677777777777777777777777777776543 3345566666665556665433 3
Q ss_pred HHHHHHHHhccCCCC
Q 008925 435 KRVLKSAEEDRQSMP 449 (548)
Q Consensus 435 ~~~~~~~~~~~~~~~ 449 (548)
.+.+.+.....|..+
T Consensus 262 ~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 262 ERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHhcCCcch
Confidence 445555555544444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-05 Score=81.77 Aligned_cols=146 Identities=7% Similarity=-0.005 Sum_probs=95.4
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 008925 237 HPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSIL 316 (548)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (548)
+.+...+..|.......|.+++|..+++...+..+. +......++..+.+.+++++|+..++++.... +.+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 455666777777777777777777777777765422 34555666667777777777777777777664 4555666667
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008925 317 AKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETL 386 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 386 (548)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+++.+.. .|....|+.+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 777777777777777777777632 1235566777777777777777777777777653 3444444444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-06 Score=70.43 Aligned_cols=124 Identities=11% Similarity=-0.065 Sum_probs=94.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 008925 260 DKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKY 339 (548)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (548)
..+++...+.. |+ .+.....++...|++++|...|+.++... +.+...+..++.++...|++++|...|+.+...
T Consensus 13 ~~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34555555542 33 34456778888999999999999988876 667888889999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 340 GVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390 (548)
Q Consensus 340 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (548)
+ +.+...+..++.++...|++++|+..|+++++.. +.+...+.....++
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQNAQ 136 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 4 3467788888889999999999999999998864 44555554444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.4e-05 Score=64.91 Aligned_cols=239 Identities=13% Similarity=0.093 Sum_probs=119.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCh
Q 008925 36 VAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKP 115 (548)
Q Consensus 36 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 115 (548)
++-+.-.|++..++..-+..... +.+...-..+.++|...|++.....-... .. .|....+..+...+..-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~eI~~---~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISEIKE---GK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccccccc---cc-CChHHHHHHHHHHhhCcchh
Confidence 45555567777766655554332 13333444455666666655433322221 11 22333333333333333333
Q ss_pred HHHH-HHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008925 116 EESL-KLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLF 194 (548)
Q Consensus 116 ~~A~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 194 (548)
++-+ ++.+.+... ....+......-+..|+..+++++|++...... +......=...+.+..+++-|.+.++
T Consensus 89 ~~~~~~l~E~~a~~-~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 89 KSILASLYELVADS-TDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred HHHHHHHHHHHHhh-ccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 223333221 122222333333445666777777776665511 22222222344555666666777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcC
Q 008925 195 EMQNNQVRPNERTCGIIVSGYCK----EGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFG 270 (548)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 270 (548)
.|.+. .+..+.+.|..+|.+ .+.+.+|.-+|+++.+. .+|++.+.+-.+.++...+++++|..+++......
T Consensus 162 ~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 76653 144555555555443 34566666666666553 35666666666666666666666666666666554
Q ss_pred CCCCHHHHHHHHHHHHhCCChh
Q 008925 271 VKPDVVTFSTIMDAWSSAGLMG 292 (548)
Q Consensus 271 ~~~~~~~~~~l~~~~~~~~~~~ 292 (548)
.+ ++.++..++.+-...|...
T Consensus 238 ~~-dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 238 AK-DPETLANLIVLALHLGKDA 258 (299)
T ss_pred CC-CHHHHHHHHHHHHHhCCCh
Confidence 22 4555555555555555443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-05 Score=80.52 Aligned_cols=132 Identities=12% Similarity=0.167 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 008925 63 DSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILV 142 (548)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 142 (548)
++..+..|.....+.|++++|..+++...+.. +-+...+..++.++.+.+++++|+..+++..... +.+......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHH
Confidence 34444444455555555555555555554431 1223344444455555555555555555544431 23334444444
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 143 RAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQN 198 (548)
Q Consensus 143 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 198 (548)
.++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|+...+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555554421 22344444555555555555555555554443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-05 Score=81.22 Aligned_cols=239 Identities=8% Similarity=0.084 Sum_probs=131.2
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008925 132 KPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD-AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGI 210 (548)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 210 (548)
+.+...+..|+..+...+++++|.++.+...+. .|+ ...|..++..+.+.++..++.-+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 334566677777777777777777777766554 333 33333344445555554333322 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 008925 211 IVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGL 290 (548)
Q Consensus 211 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 290 (548)
++.......++.....+...+.+. ..+..++..++.+|-+.|+.+++..+++++.+.. +.++.+.|.+...|+.. +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 233333334443333333344432 2334466666666666777777777777666665 33566666666666666 6
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 008925 291 MGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEK 370 (548)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 370 (548)
+++|..++.+++.. +...+++..+.++|.++.... |+. ++.-..+.++
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d---------------~d~f~~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDD---------------FDFFLRIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--ccc---------------chHHHHHHHH
Confidence 66666666666543 445556666666666666542 221 1222222222
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008925 371 MCEI-GINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWR 426 (548)
Q Consensus 371 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (548)
+... +..--..++.-+-..|...+++++++.+++.+++.. +-+......++.+|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 2221 222233445556667777788888888888888753 223345666666665
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.7e-05 Score=79.71 Aligned_cols=237 Identities=9% Similarity=0.055 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPD-SILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLI 106 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 106 (548)
+...+..|+..+...+++++|.++.+...+. .|+ ...|..+...+.+.++.+++..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 4467788888887888888888888866664 333 33444444456666665554444 2 22
Q ss_pred HHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008925 107 KGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGET 186 (548)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 186 (548)
.......++.-...+...+.. ...+...+..++.+|-+.|+.++|..+++++++.. +-|+.+.|.++..|... +.
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 223333333223333333332 23344577778888888888888888888888876 55778888888888888 88
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHH
Q 008925 187 YRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLM 266 (548)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 266 (548)
++|++++.++... +...+++..+.+++.++.... +.+... -..+.+.+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~----------------f~~i~~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDF----------------FLRIERKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchH----------------HHHHHHHH
Confidence 8888887776553 444556666777666666543 111111 11122222
Q ss_pred HHc-CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 267 EEF-GVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYV 321 (548)
Q Consensus 267 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (548)
... +..--..++--+-..|...++++++..+++.+++.. +.+..+..-++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 211 111122333344445555556666666666666554 334444555555443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=7e-05 Score=63.24 Aligned_cols=188 Identities=17% Similarity=0.170 Sum_probs=113.5
Q ss_pred CCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHH
Q 008925 43 KRFKSILSLISKVEKD---G-MKPDSI-LFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEE 117 (548)
Q Consensus 43 g~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 117 (548)
.+.++.++++.++... | ..++.. .+..++-+....|+.+.|..+++++... ++-+..+-..-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 4555666666555422 2 334433 4455555666677777777777777655 23333333333333445677777
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 118 SLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQ 197 (548)
Q Consensus 118 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 197 (548)
|+++++.+..++ |.|..++---+...-..|+.-+|++-+.+.++. +..|...|.-|...|...|++++|.-.++++.
T Consensus 105 A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 777777777653 445556655555555666666777777666665 35577777777777777777777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Q 008925 198 NNQVRPNERTCGIIVSGYCKEG---NMEDAMRFLYRMKELE 235 (548)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 235 (548)
-..+. ++..+..+...+.-.| +...|.++|.+.++..
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 55332 4455555555443333 4566777777777654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.9e-05 Score=64.71 Aligned_cols=164 Identities=13% Similarity=0.010 Sum_probs=94.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 008925 278 FSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN 357 (548)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 357 (548)
|..++-+....|+.+.|...++.+...- |.+..+-..-...+-..|++++|+++++.+++.+ +.|.+++..-+...-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 4444455556666666666666665542 3333333333333445666777777777666654 3344555555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC---CHHH
Q 008925 358 AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIG---LARE 433 (548)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~ 433 (548)
.|+..+|++-+.+.++. +..|...|..|...|...|++++|.-++++++-. .|. +..+..+++.+.-.| +..-
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 66666666666666654 3556677777777777777777777777766642 343 335555666555444 4556
Q ss_pred HHHHHHHHHhccC
Q 008925 434 AKRVLKSAEEDRQ 446 (548)
Q Consensus 434 A~~~~~~~~~~~~ 446 (548)
|.+++.++.+..+
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 6666666665544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.7e-06 Score=68.23 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 311 HVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390 (548)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (548)
.....++..+...|++++|...|+.+...+ +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 344444455555555555555555554432 2234445555555555555555555555555443 33445555555555
Q ss_pred HhcCChHHHHHHHHHHHH
Q 008925 391 GEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~ 408 (548)
...|++++|...|++..+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.9e-05 Score=71.94 Aligned_cols=156 Identities=13% Similarity=0.039 Sum_probs=111.0
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008925 316 LAKGYVRAGEPQKAESILTSMRKYGVHPN-VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK 394 (548)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 394 (548)
....+...|++++|+..++.+.+. .|+ +..+......+...++.++|.+.+++++... |........+..+|.+.|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g 388 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcC
Confidence 334455678888888888888775 344 4445666777888888888888888888763 333566777888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhccccccccccc
Q 008925 395 QPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFL 474 (548)
Q Consensus 395 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 474 (548)
++.+|+.+++..... .+-++..|..++.+|...|+..+|....-+.
T Consensus 389 ~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~--------------------------------- 434 (484)
T COG4783 389 KPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG--------------------------------- 434 (484)
T ss_pred ChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH---------------------------------
Confidence 888888888887754 2455668888888888888888877666542
Q ss_pred cccccccccCCCChhhhhhhhhhccc---ccccchhhhhHHh
Q 008925 475 QIPGVVSSEHNGSSAAKIRSQIVLRS---DTVWTATKSLFVN 513 (548)
Q Consensus 475 ~l~~~y~~~~~~~~a~~~~~~~~~~~---g~~w~~~~~~~~~ 513 (548)
|.-.|+|++|..-..+...+. -..|..+...++.
T Consensus 435 -----~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~ 471 (484)
T COG4783 435 -----YALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQ 471 (484)
T ss_pred -----HHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 555677777776555554433 5777777776665
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.3e-06 Score=67.03 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=94.0
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008925 332 ILTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKG 410 (548)
Q Consensus 332 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 410 (548)
.++++... .| +......++..+...|++++|...|+++...+ +.+...+..+...+...|++++|...+++..+.+
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566654 34 34556778888899999999999999999876 6688899999999999999999999999998753
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 411 VRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 411 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
+.+...+..++.++...|++++|.+.++++.+.+|..
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 4456688889999999999999999999998776543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-07 Score=53.37 Aligned_cols=32 Identities=34% Similarity=0.889 Sum_probs=15.5
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 008925 340 GVHPNVVMFTTVISGWCNAVKMQRAMSIYEKM 371 (548)
Q Consensus 340 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 371 (548)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0019 Score=64.64 Aligned_cols=224 Identities=13% Similarity=0.124 Sum_probs=146.0
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHH--HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLV--AALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVD 81 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 81 (548)
.+..+++.+|+.-...+++.. |+.. |...+ -.+.+.|+.++|..+++.....+ +.|..+...+-.+|...|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhh
Confidence 456788999999999998863 4442 33333 34568999999999888877664 337789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCC-C---------H
Q 008925 82 EAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKN-S---------I 151 (548)
Q Consensus 82 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~ 151 (548)
+|..+|+...+. .|+......+..+|.+.+.+.+-.+.--++.+. ++.+...+=++++.....- . .
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 999999999886 567777778888888887765543333333332 2333333333333333221 1 2
Q ss_pred HHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008925 152 EEAWNVVYKMVASG-IQPDAVTYNTLARAYAQYGETYRAEQMLF-EMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLY 229 (548)
Q Consensus 152 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 229 (548)
.-|.+.++++++.+ --.+..-...-.......|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 34556666666654 11111112222334566788999999884 34443334445555566677778888888888888
Q ss_pred HHHhCC
Q 008925 230 RMKELE 235 (548)
Q Consensus 230 ~~~~~~ 235 (548)
++...+
T Consensus 251 ~Ll~k~ 256 (932)
T KOG2053|consen 251 RLLEKG 256 (932)
T ss_pred HHHHhC
Confidence 877765
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.3e-07 Score=52.85 Aligned_cols=31 Identities=35% Similarity=0.799 Sum_probs=14.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008925 60 MKPDSILFNAMINACSESGNVDEAMKIFQKM 90 (548)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 90 (548)
+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0015 Score=61.65 Aligned_cols=414 Identities=11% Similarity=0.070 Sum_probs=246.4
Q ss_pred ccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHH--
Q 008925 6 GKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSE-SGNVDE-- 82 (548)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~-- 82 (548)
+...++++..+++++... .+-....|..-+..-.+.++++....+|.+++.. ..+...|...++.-.+ .|+...
T Consensus 31 qt~~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r 107 (656)
T KOG1914|consen 31 QTQPIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSYVRETKGKLFGYR 107 (656)
T ss_pred ccCCHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHHHHHHccCcchHH
Confidence 445789999999999874 3335578999999999999999999999999876 3456778777765433 333333
Q ss_pred --HHHHHHHHHh-cCCCC-CHHHHHHHHHHHh---------ccCChHHHHHHHHHhhhCCCCCCCH-HHHHH------HH
Q 008925 83 --AMKIFQKMKD-SGCKP-TTSTYNTLIKGYG---------NVGKPEESLKLLQLMSQDKNVKPND-RTYNI------LV 142 (548)
Q Consensus 83 --A~~~~~~~~~-~~~~~-~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~------l~ 142 (548)
..+.|+-... .|..+ +-..|+..+..+- ...+++...++|.++.... -.+. ..|+- -+
T Consensus 108 ~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP--m~nlEkLW~DY~~fE~~I 185 (656)
T KOG1914|consen 108 EKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP--MHNLEKLWKDYEAFEQEI 185 (656)
T ss_pred HHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc--cccHHHHHHHHHHHHHHH
Confidence 3344444433 34333 2345665555442 2345667777888876531 1111 12211 11
Q ss_pred H-----H--HHhCCCHHHHHHHHHHHHH--CCCCCCHH---------------HHHHHHHHHHhcC------CH--HHHH
Q 008925 143 R-----A--WCSKNSIEEAWNVVYKMVA--SGIQPDAV---------------TYNTLARAYAQYG------ET--YRAE 190 (548)
Q Consensus 143 ~-----~--~~~~g~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~l~~~~~~~g------~~--~~a~ 190 (548)
. - --+...+..|.++++++.. .|+..... .|..+|.-=...+ .. ....
T Consensus 186 N~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~ 265 (656)
T KOG1914|consen 186 NIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVM 265 (656)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHH
Confidence 1 1 1123356677777777643 23221111 1333332211111 00 1122
Q ss_pred HHHHHHHh-CCCCCCHHHHHH-------HHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC--
Q 008925 191 QMLFEMQN-NQVRPNERTCGI-------IVSGYCKEGN-------MEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDI-- 253 (548)
Q Consensus 191 ~~~~~~~~-~~~~~~~~~~~~-------l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 253 (548)
-.+++.+. -+..|+ .|.. ....+...|+ .+++..+++..++.-...+..+|..+...--..
T Consensus 266 yayeQ~ll~l~~~pe--iWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~ 343 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPE--IWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYD 343 (656)
T ss_pred HHHHHHHHHHhcCHH--HHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcc
Confidence 22333221 122222 2211 1223334444 456666676665532223333343333221111
Q ss_pred -CChhhHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHhHHH
Q 008925 254 -KDSDGVDKALTLMEEFG-VKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEP-DIHVFSILAKGYVRAGEPQKAE 330 (548)
Q Consensus 254 -~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 330 (548)
...+.....++.+.... ..|+ .+|..++..-.+..-++.|..+|.++.+.+..+ ++.+.++++.-|+ .++.+-|.
T Consensus 344 ~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~Af 421 (656)
T KOG1914|consen 344 DNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAF 421 (656)
T ss_pred cchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHH
Confidence 12455556666655442 2333 467788888888899999999999999887666 6778888888776 57899999
Q ss_pred HHHHHHHhCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008925 331 SILTSMRKYGVHPNVVMF-TTVISGWCNAVKMQRAMSIYEKMCEIGINPNL--KTYETLLWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (548)
++|+--++. .+|...| ...+.-+...++-..|..+|++.+..+++|+. ..|..++.--..-|+..-+.++-+++.
T Consensus 422 rIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 422 RIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 999987664 3454444 67788888899999999999999998666654 679999999999999999999988876
Q ss_pred HC-C--CCCCHHHHHHHHHHHHHcCC
Q 008925 408 EK-G--VRPKKSTIQLVADSWRAIGL 430 (548)
Q Consensus 408 ~~-~--~~p~~~~~~~l~~~~~~~g~ 430 (548)
.. . ..+....-..+++-|.-.+.
T Consensus 500 ~af~~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 500 TAFPADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred HhcchhhcCCCChHHHHHHHHhhccc
Confidence 42 1 23333334445555554444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00016 Score=67.10 Aligned_cols=116 Identities=13% Similarity=0.025 Sum_probs=59.4
Q ss_pred HHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 008925 248 KGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQ 327 (548)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (548)
..+...|++++|+..+..+.... +-|+.......+.+...++.++|.+.+++++... +........+..+|.+.|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChH
Confidence 33444555555555555555442 2244444455555555555555555555555542 222344445555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 008925 328 KAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMS 366 (548)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 366 (548)
+|+.+++...... +-|+..|..|..+|...|+..++..
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 5555555555442 3345555555555555555554443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00056 Score=62.14 Aligned_cols=277 Identities=12% Similarity=0.027 Sum_probs=133.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhcc
Q 008925 34 TLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKP-TTSTYNTLIKGYGNV 112 (548)
Q Consensus 34 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 112 (548)
.....+.+..++..|+..+...++.. +.++.-|..-...+...|++++|.--.+.-.+. +| .........+++...
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLAL 130 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhh
Confidence 33445566677777888888777763 334556666666777777777777666555443 12 122333344444444
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHH-HHHHhcCCHHHHH
Q 008925 113 GKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGI-QPDAVTYNTLA-RAYAQYGETYRAE 190 (548)
Q Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~a~ 190 (548)
++..+|...++.- ..+ ....++..++....... +|...++..|- .++...|++++|.
T Consensus 131 ~~~i~A~~~~~~~----------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 131 SDLIEAEEKLKSK----------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred HHHHHHHHHhhhh----------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 5555555544411 001 11223333333333321 13333443332 4556667777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------------HHHHHHHHHHcCCChh
Q 008925 191 QMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLV-------------VFNSLIKGFLDIKDSD 257 (548)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~~~~~ 257 (548)
+.--.+++.... +......-..++.-.++.+.|...|++.+..+ |+-. .+..-..-..+.|.+.
T Consensus 190 ~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 190 SEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 766666554322 33333333344555667777777777776644 3321 1111222233444444
Q ss_pred hHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 008925 258 GVDKALTLMEEFG---VKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILT 334 (548)
Q Consensus 258 ~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 334 (548)
.|.+.+.+.+... .+++...|.....+..+.|+.++|+.--..+++.+ +.-+..|..-..++...++|++|.+-++
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554444444332 12233334444444445555555555444444332 1112233333334444445555555554
Q ss_pred HHHh
Q 008925 335 SMRK 338 (548)
Q Consensus 335 ~~~~ 338 (548)
+..+
T Consensus 346 ~a~q 349 (486)
T KOG0550|consen 346 KAMQ 349 (486)
T ss_pred HHHh
Confidence 4443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.35 E-value=3e-05 Score=62.70 Aligned_cols=125 Identities=20% Similarity=0.150 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC--HHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNV----VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPN--LKTYET 385 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ 385 (548)
.|..++..+ ..++...+...++.+.+.. |+. .....+...+...|++++|...|+.+......|+ ......
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 344444444 4777888888888887753 222 2334455677788888888888888887642222 124455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 386 LLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
|...+...|++++|+..++..... ......+...++++.+.|++++|+..|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677888888888888888664322 233446667788888899999998888875
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.3e-05 Score=61.29 Aligned_cols=126 Identities=14% Similarity=0.052 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH--HHHHHH
Q 008925 277 TFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPD---IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNV--VMFTTV 351 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l 351 (548)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......|+. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3667777777777777653 333 223344556777778888888888777775422222 234456
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008925 352 ISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVM 406 (548)
Q Consensus 352 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (548)
...+...|++++|+..++..... ......+..++.+|.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66777778888888877664322 233445666777778888888888777654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.6e-05 Score=72.04 Aligned_cols=124 Identities=15% Similarity=0.069 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYG 391 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (548)
....|+..+...++++.|+.+|+++.+.. |+. ...++..+...++..+|++++++.++.. +.+...+...+..|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455666667778888888888888753 443 3346666767777888888888888653 556677777777788
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 392 EAKQPWRAEELLQVMEEKGVRPKK-STIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
..++++.|+.+.+++.+. .|+. .+|..++.+|...|++++|+..++.++
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888888874 4554 488888888888888888888888776
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0038 Score=60.73 Aligned_cols=205 Identities=9% Similarity=0.067 Sum_probs=120.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----------HHHhcCChHHHHHHHHHHHhcCC
Q 008925 26 RPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMIN----------ACSESGNVDEAMKIFQKMKDSGC 95 (548)
Q Consensus 26 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~g~~~~A~~~~~~~~~~~~ 95 (548)
.|.+..|..|.......-+++.|...|-+.... +.......|-. .-+--|++++|.+++-++.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr-- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR-- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh--
Confidence 466777888888777777777777777665321 11111111111 112247788888887776544
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008925 96 KPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNT 175 (548)
Q Consensus 96 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (548)
...+..+.+.|++-...++++.--.+..-..-...|+.+...+.....|++|.++|..-.. . ..
T Consensus 764 -------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~ 827 (1189)
T KOG2041|consen 764 -------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---EN 827 (1189)
T ss_pred -------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---Hh
Confidence 2345566677777777766654322111111235677788888877888888887766432 1 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 008925 176 LARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKD 255 (548)
Q Consensus 176 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 255 (548)
.+.++.+..++++-+.+.+.+. .+...+-.+..++.+.|.-++|.+.|-+... |. ..+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHHHH
Confidence 4566666666666555554443 3556667777888888888888777644321 21 23445566666
Q ss_pred hhhHHHHHHH
Q 008925 256 SDGVDKALTL 265 (548)
Q Consensus 256 ~~~a~~~~~~ 265 (548)
+.+|.++-+.
T Consensus 894 W~~avelaq~ 903 (1189)
T KOG2041|consen 894 WGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHh
Confidence 6666665543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.9e-05 Score=70.20 Aligned_cols=124 Identities=18% Similarity=0.158 Sum_probs=63.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008925 102 YNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYA 181 (548)
Q Consensus 102 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 181 (548)
...|+..+...++++.|+.+|+++.+. .|+ ....+++.+...++-.+|++++.+.++.. +.+...+......+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 334444444455555555555555443 233 22234455555555555555555555432 334444444455555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 182 QYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMK 232 (548)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 232 (548)
+.++++.|+++.+++....+. +..+|..|..+|.+.|+++.|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 555555666555555554222 34455555566666666666665555543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0015 Score=59.53 Aligned_cols=279 Identities=14% Similarity=0.059 Sum_probs=173.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhC
Q 008925 69 AMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSK 148 (548)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (548)
.....+.+..++..|+..+..+++.. +-+..-|..-+..+...|++++|.--.++-.+.. +.......-..+++...
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCHLAL 130 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhhhhh
Confidence 34445667778888999999888874 3456667777777888888888876665554432 11223344445555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH-HHHHhcCCHHHHHH
Q 008925 149 NSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQV-RPNERTCGIIV-SGYCKEGNMEDAMR 226 (548)
Q Consensus 149 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~A~~ 226 (548)
++..+|.+.++. ...+ ....++..++.+..... +|.-..+..+- .++.-.|++++|.+
T Consensus 131 ~~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 131 SDLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 666666655551 1111 11223333333333222 23334444443 56677899999998
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHH-------------HHHHHHHHHhCCChhH
Q 008925 227 FLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVT-------------FSTIMDAWSSAGLMGK 293 (548)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~ 293 (548)
.--..++.+ ..+......-..++....+.+.+...+++.+..+ |+... +..-..-..+.|++..
T Consensus 191 ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 191 EAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 887777754 3344444444445556778888999998888765 33221 1112233457888999
Q ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHH
Q 008925 294 CQEIFDDMVKAG---IEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN-VVMFTTVISGWCNAVKMQRAMSIYE 369 (548)
Q Consensus 294 a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 369 (548)
|.+.|.+.+..+ ..++...|.....+..+.|+..+|+.--+...+.+ |. +..+..-..++...+++++|.+-|+
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888653 34455667777778888999999998888887642 21 2234444556667788999999999
Q ss_pred HHHHcC
Q 008925 370 KMCEIG 375 (548)
Q Consensus 370 ~~~~~~ 375 (548)
++.+..
T Consensus 346 ~a~q~~ 351 (486)
T KOG0550|consen 346 KAMQLE 351 (486)
T ss_pred HHHhhc
Confidence 888754
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0097 Score=59.87 Aligned_cols=194 Identities=10% Similarity=0.028 Sum_probs=127.0
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEA 83 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 83 (548)
+.+.|+.++|..+++.....+.. |..+...+-.+|...++.++|..+|++.... -|+......+..+|.+.+++.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999888877655444 7788999999999999999999999999875 56677778888899998887665
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccC----------ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 008925 84 MKIFQKMKDSGCKPTTSTYNTLIKGYGNVG----------KPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEE 153 (548)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (548)
.++--++-+. ++.++..+-++++.+...- -..-|.+.++.+...+|.-.+..-.......+...|.+++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 5444444332 2334555555555554321 1234566677776655422222223333445566788999
Q ss_pred HHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008925 154 AWNVVYK-MVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQV 201 (548)
Q Consensus 154 a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 201 (548)
|+.++.- ..+.-...+...-+.-+..+...+++.+..++-.++...+.
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 9988843 33332223333444555666777777777777777766654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.2e-05 Score=56.72 Aligned_cols=93 Identities=18% Similarity=0.109 Sum_probs=51.8
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAI 428 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 428 (548)
..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.++...+.. +.+...+..++.++...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 344445555566666666666665543 3333455555666666666666666666655432 22223555566666666
Q ss_pred CCHHHHHHHHHHHHh
Q 008925 429 GLAREAKRVLKSAEE 443 (548)
Q Consensus 429 g~~~~A~~~~~~~~~ 443 (548)
|++++|...++++.+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666665543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00013 Score=57.83 Aligned_cols=97 Identities=9% Similarity=-0.095 Sum_probs=67.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWR 426 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (548)
..-.+..-+...|++++|.++|+-+.... +-+...|..|.-++...|++++|+..|..+.... +-++..+..++.++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 33445555667777777777777777765 4566667777777777777777777777777643 234556777777777
Q ss_pred HcCCHHHHHHHHHHHHhcc
Q 008925 427 AIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~ 445 (548)
..|+.+.|++.|+.+...-
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 7777777777777766443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00011 Score=57.33 Aligned_cols=95 Identities=13% Similarity=0.016 Sum_probs=43.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHH
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEIGINPN---LKTYETLLWGYGEAKQPWRAEELLQVMEEKGVR-P-KKSTIQLVAD 423 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~ 423 (548)
..++..+...|++++|.+.|+++.... +.+ ...+..++.++...|++++|...++.+...... | ....+..++.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444444555555555555554432 111 223444555555555555555555555432100 1 1234444455
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q 008925 424 SWRAIGLAREAKRVLKSAEED 444 (548)
Q Consensus 424 ~~~~~g~~~~A~~~~~~~~~~ 444 (548)
++...|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555554433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00029 Score=55.87 Aligned_cols=97 Identities=10% Similarity=0.000 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 310 IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWG 389 (548)
Q Consensus 310 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (548)
....-.+...+...|++++|..+|+.+...+ +-+..-|..|..++...|++++|+..|..+.... +.|+..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3444555666777888888888888887754 2345567778888888888888888888888776 5677788888888
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 008925 390 YGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~ 408 (548)
+...|+.+.|.+.|+..+.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887764
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.2e-05 Score=65.01 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=59.4
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 008925 317 AKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQP 396 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (548)
+.-+.+.+++++|+..|.++++.. +-|.+-|..-..+|++.|.++.|++-.+.++..+ +....+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 344555666666666666666642 2244455556666666666666666666666643 23345666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH
Q 008925 397 WRAEELLQVMEEKGVRPKKSTI 418 (548)
Q Consensus 397 ~~A~~~~~~~~~~~~~p~~~~~ 418 (548)
++|++.|++.++ +.|+.++|
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHH
Confidence 666666666665 45665544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.3e-05 Score=57.75 Aligned_cols=81 Identities=27% Similarity=0.249 Sum_probs=57.3
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 008925 358 AVKMQRAMSIYEKMCEIGIN-PNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAK 435 (548)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 435 (548)
.|+++.|+.+++++.+.... ++...+..++.+|.+.|++++|+.++++ .+. .|+ ......++.++...|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 57888889999888876421 2445566688888899999999998887 322 233 345556688888999999999
Q ss_pred HHHHHH
Q 008925 436 RVLKSA 441 (548)
Q Consensus 436 ~~~~~~ 441 (548)
++++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 888763
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0003 Score=54.77 Aligned_cols=93 Identities=14% Similarity=-0.014 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--CCCHHHHHHHH
Q 008925 314 SILAKGYVRAGEPQKAESILTSMRKYGVHPN----VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGI--NPNLKTYETLL 387 (548)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~ 387 (548)
..++..+.+.|++++|...|+.+.... |+ ...+..++.++...|+++.|...|+.+....- +.....+..++
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 334444444555555555555444321 11 12333444445555555555555555444210 00123344444
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 008925 388 WGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~ 408 (548)
.++.+.|++++|...++++.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHH
Confidence 445555555555555555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.3e-05 Score=57.80 Aligned_cols=81 Identities=19% Similarity=0.262 Sum_probs=48.0
Q ss_pred cCChhhHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 7 KGKPHEAHYIFNCLIEEGHR-PTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMK 85 (548)
Q Consensus 7 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 85 (548)
+|+++.|+.+|+.+++..+. ++...+..++.++.+.|++++|..++++ .+.+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 56777777777777775432 1344455567777777777777777766 2221 1122333444666777777777777
Q ss_pred HHHH
Q 008925 86 IFQK 89 (548)
Q Consensus 86 ~~~~ 89 (548)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7664
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.4e-05 Score=67.89 Aligned_cols=261 Identities=16% Similarity=0.122 Sum_probs=129.3
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHH--HC--CC-CCCHHHHHHHHHHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTL----ITYTTLVAALTRQKRFKSILSLISKVE--KD--GM-KPDSILFNAMINAC 74 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~--~~-~~~~~~~~~l~~~~ 74 (548)
+++.|+....+.+|+.+++.|.. |. ..|..|+.+|.-.+++++|++....=+ .+ |- .-...+-..|...+
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 57889999999999999988754 44 357777888888889999988664311 11 10 11233444566666
Q ss_pred HhcCChHHHHHHHHHH----HhcCCC-CCHHHHHHHHHHHhccCC--------------------hHHHHHHHHHhhhC-
Q 008925 75 SESGNVDEAMKIFQKM----KDSGCK-PTTSTYNTLIKGYGNVGK--------------------PEESLKLLQLMSQD- 128 (548)
Q Consensus 75 ~~~g~~~~A~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~~- 128 (548)
--.|.+++|+....+- .+.|-. .....+-.+...|...|+ ++.|.++|..-.+.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888877654332 222211 122345556666665543 22233333221110
Q ss_pred ---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 008925 129 ---KNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVA----SGIQ-PDAVTYNTLARAYAQYGETYRAEQMLFEMQN-- 198 (548)
Q Consensus 129 ---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 198 (548)
+..-.-...|..|...|.-.|+++.|+...+.-+. .|-. .....+..|..++.-.|+++.|.+.|+....
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 00000112334444444445556666554443221 1100 1123445555566666666666665554321
Q ss_pred --CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 008925 199 --NQ-VRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKEL----E-VHPNLVVFNSLIKGFLDIKDSDGVDKALTL 265 (548)
Q Consensus 199 --~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 265 (548)
.| -.....+...|...|.-..++++|+.++.+-+.. + ..-...++-+|..+|...|..++|....+.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 11 1112334445555555555556665555443221 0 111223444555555555555555544443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00014 Score=53.74 Aligned_cols=94 Identities=20% Similarity=0.184 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 313 FSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
+..++..+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445555666666666766666666542 2233455556666666667777777776666653 3444566666666666
Q ss_pred cCChHHHHHHHHHHHH
Q 008925 393 AKQPWRAEELLQVMEE 408 (548)
Q Consensus 393 ~g~~~~A~~~~~~~~~ 408 (548)
.|++++|...++...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777776666554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00029 Score=66.40 Aligned_cols=90 Identities=8% Similarity=0.048 Sum_probs=46.0
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 008925 283 DAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQ 362 (548)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 362 (548)
..+...|+++.|+..|.++++.+ +.+...|..+..+|...|++++|+..+++++... +.+...|..++.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 33444555555555555555543 3444455555555555555555555555555432 123334555555555555555
Q ss_pred HHHHHHHHHHHc
Q 008925 363 RAMSIYEKMCEI 374 (548)
Q Consensus 363 ~A~~~~~~~~~~ 374 (548)
+|+..|+++++.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 555555555553
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00012 Score=66.14 Aligned_cols=132 Identities=10% Similarity=0.044 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh----CCC-CCCHH
Q 008925 277 TFSTIMDAWSSAGLMGKCQEIFDDMVK----AGI-EPDIHVFSILAKGYVRAGEPQKAESILTSMRK----YGV-HPNVV 346 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~ 346 (548)
.|..+...|.-.|+++.|+...+.-+. .|- .....++..|..++.-.|+++.|.+.++.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344555555566778888776654432 111 11234667777888888888888877765532 221 11234
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEI----G-INPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
+.-+|...|.-..++++|+.++.+-+.. + ..-....+++|..++...|..++|+.+.+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5566777777777788888877764421 1 112345677888888888888888887776553
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0041 Score=50.20 Aligned_cols=131 Identities=15% Similarity=0.066 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC---CHHHH
Q 008925 307 EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINP---NLKTY 383 (548)
Q Consensus 307 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~ 383 (548)
.|+...-..|..++...|+..+|...|++...--+..|......+..+....+++..|...++++.+.. | ++.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 466666666777777777777777777777654444566666677777777777777777777776642 2 12334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 384 ETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
..+.+.+...|.+.+|...|+..... .|+...-......+.++|+.++|..-+...
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 45667777777777777777777663 466665555666677777766666555443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.019 Score=53.26 Aligned_cols=425 Identities=13% Similarity=0.141 Sum_probs=215.5
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHH------HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLI------TYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINA--CS 75 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 75 (548)
+-+++++.+|..+|.++.+.- ..+.. .-+.++.+|.. .+.+.....+....+. .|. ..|-.|..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~~-s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FGK-SAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cCC-chHHHHHHHHHHH
Confidence 446788888888888887652 22322 23445555543 3555555555555543 221 223333332 34
Q ss_pred hcCChHHHHHHHHHHHhc--CCCCC---HHH---------HHHHHHHHhccCChHHHHHHHHHhhhCC---CCCCCHHHH
Q 008925 76 ESGNVDEAMKIFQKMKDS--GCKPT---TST---------YNTLIKGYGNVGKPEESLKLLQLMSQDK---NVKPNDRTY 138 (548)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~--~~~~~---~~~---------~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~ 138 (548)
+.+.+++|++.+...... +..+. ... =+..+.++...|++.++..+++++...- ....+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678888888887776554 22221 111 1345666777888888888887776531 122466677
Q ss_pred HHHHHHHHhCC--------C-------HHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcC--CHHHHHHHHHH
Q 008925 139 NILVRAWCSKN--------S-------IEEAWNVVYKMVASG------IQPDAVTYNTLARAYAQYG--ETYRAEQMLFE 195 (548)
Q Consensus 139 ~~l~~~~~~~g--------~-------~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~ 195 (548)
+.++-.+.++= . ++.+.-+.+++.... +.|.......++.-..-.- ...--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 76544443211 0 111111112221110 1111111111111111100 00111122222
Q ss_pred HHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHcCCChhhHHHHHHHHHHcC
Q 008925 196 MQNNQVRPNER-TCGIIVSGYCKEGNMEDAMRFLYRMKELEVHP----NLVVFNSLIKGFLDIKDSDGVDKALTLMEEFG 270 (548)
Q Consensus 196 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 270 (548)
-...-+.|+.. +...+...+.. +.+++..+-+.+....+.+ -..++..++....+.++...|.+.+..+....
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 22222333322 22233333333 5566666655554432111 12467777777778888888888888777654
Q ss_pred CCCCHHHHHHH-------HHHHH----hCCChhHHHHHHHHHHHcCCCCCHH-HHHHHH---HHHHHcCC-HhHHHHHHH
Q 008925 271 VKPDVVTFSTI-------MDAWS----SAGLMGKCQEIFDDMVKAGIEPDIH-VFSILA---KGYVRAGE-PQKAESILT 334 (548)
Q Consensus 271 ~~~~~~~~~~l-------~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~---~~~~~~g~-~~~A~~~~~ 334 (548)
|+...-.-+ -+..+ ...+...-+.+|+.....+ .|.. ....|+ .-+.+.|. -++|+.+++
T Consensus 329 --p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 329 --PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred --CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 333221111 12222 1112333344555555443 2222 222222 33455565 788999999
Q ss_pred HHHhCCCCCCHHHHHHHHH----HHhc---cCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHH--HHhcCChHHHHH
Q 008925 335 SMRKYGVHPNVVMFTTVIS----GWCN---AVKMQRAMSIYEKMCEIGINPNL----KTYETLLWG--YGEAKQPWRAEE 401 (548)
Q Consensus 335 ~~~~~~~~p~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~--~~~~g~~~~A~~ 401 (548)
.+++-. +-|...-|.+.. .|.+ ...+..-..+-+-+.+.|++|-. ..-+.|.+| +...|++.++.-
T Consensus 405 ~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ 483 (549)
T PF07079_consen 405 LILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYL 483 (549)
T ss_pred HHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 988742 224433333322 2221 12233334444444466776643 334444443 457899998876
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 402 LLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
+-.=..+ +.|++.+++.++-++....++++|..++.+.+
T Consensus 484 ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 484 YSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 5544444 78999999999999999999999999999864
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0048 Score=56.31 Aligned_cols=92 Identities=18% Similarity=0.123 Sum_probs=44.7
Q ss_pred HHHHHhC-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----H-HHH
Q 008925 142 VRAWCSK-NSIEEAWNVVYKMVAS----GIQPD--AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPN-----E-RTC 208 (548)
Q Consensus 142 ~~~~~~~-g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~-~~~ 208 (548)
...|... |++++|++.|++..+. + .+. ..++..++..+.+.|++++|.++|+++.......+ . ..+
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 3344455 6666666666665432 1 111 23344556666666777777777766654322111 1 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 209 GIIVSGYCKEGNMEDAMRFLYRMKEL 234 (548)
Q Consensus 209 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 234 (548)
...+-++...||+..|...|++....
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22333455566666666666666543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00056 Score=64.49 Aligned_cols=92 Identities=10% Similarity=-0.016 Sum_probs=66.1
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 008925 246 LIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGE 325 (548)
Q Consensus 246 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (548)
....+...|+++.|+..++++++..+. +...+..+..++...|++++|+..++++++.. +.+...|..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 345556677777777777777776532 56667777777777777888877777777765 4566677777777777778
Q ss_pred HhHHHHHHHHHHhC
Q 008925 326 PQKAESILTSMRKY 339 (548)
Q Consensus 326 ~~~A~~~~~~~~~~ 339 (548)
+++|+..|+++++.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 87787777777764
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00093 Score=55.89 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPN--VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWG 389 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (548)
.+..++..+...|++++|...|+++.+....+. ...+..++..+...|++++|...++++++.. +.+...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 445555555556666666666665554321111 2345555566666666666666666666542 3334445555555
Q ss_pred HHhcCC
Q 008925 390 YGEAKQ 395 (548)
Q Consensus 390 ~~~~g~ 395 (548)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 555554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0011 Score=65.41 Aligned_cols=69 Identities=14% Similarity=-0.019 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 379 NLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
+...+..+.-.....|++++|...++++.+. .|+...|..++.++...|+.++|...++++...+|..|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 3444555544444455566666666655553 24545555555555566666666666666555555544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0013 Score=64.96 Aligned_cols=145 Identities=11% Similarity=0.057 Sum_probs=106.1
Q ss_pred CCCCCHHHHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHH
Q 008925 270 GVKPDVVTFSTIMDAWSSA-----GLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAG--------EPQKAESILTSM 336 (548)
Q Consensus 270 ~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~ 336 (548)
..+.+...|...+.+.... ++...|..+|+++++.. |.....+..+..++.... +...+.+..++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4556788899988876533 23779999999999985 445566666655554322 233444444444
Q ss_pred HhC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008925 337 RKY-GVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK 415 (548)
Q Consensus 337 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 415 (548)
... ....+...+..+.......|++++|...++++++.+ |+...|..++..+...|+.++|.+.++++... .|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 332 123455677777777777899999999999999975 68899999999999999999999999999874 5766
Q ss_pred HHHH
Q 008925 416 STIQ 419 (548)
Q Consensus 416 ~~~~ 419 (548)
.+|.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 6653
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0004 Score=57.92 Aligned_cols=79 Identities=9% Similarity=-0.023 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHP--NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWG 389 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (548)
.+..++..+...|++++|+..|++.......| ...++..+...+...|++++|+..+++++... +....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 34445555555566666666666555432111 12345555556666666666666666665542 2233444444444
Q ss_pred HH
Q 008925 390 YG 391 (548)
Q Consensus 390 ~~ 391 (548)
+.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 44
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00029 Score=61.41 Aligned_cols=97 Identities=14% Similarity=0.225 Sum_probs=71.9
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChH
Q 008925 284 AWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN-VVMFTTVISGWCNAVKMQ 362 (548)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 362 (548)
-..+.+++.+|+..|.++++.. +-|..-|..-..+|.+.|.++.|++-.+..+..+ |. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHH
Confidence 3456678888888888888775 5667777777888888888888888888777743 33 457888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH
Q 008925 363 RAMSIYEKMCEIGINPNLKTYET 385 (548)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~ 385 (548)
+|++.|+++++. .|+-.+|..
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHH
Confidence 888888888875 455555443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.002 Score=58.76 Aligned_cols=179 Identities=14% Similarity=0.161 Sum_probs=103.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHh----CCCCCC--HHHHH
Q 008925 281 IMDAWSSAGLMGKCQEIFDDMVKA----GIEPD-IHVFSILAKGYVRAGEPQKAESILTSMRK----YGVHPN--VVMFT 349 (548)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~ 349 (548)
....|...+++++|...|.++... +-+.+ ...|.....+|.+. ++++|...++++.. .| .|+ ...+.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~ 118 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLK 118 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence 334444555555555555544321 10000 11233333333333 66666666665543 22 122 22556
Q ss_pred HHHHHHhcc-CChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHH-
Q 008925 350 TVISGWCNA-VKMQRAMSIYEKMCEI----GINPN--LKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP-----KKS- 416 (548)
Q Consensus 350 ~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~- 416 (548)
.+...|... |++++|++.|+++.+. + .+. ..++..++..+.+.|++++|+++|++........ +..
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 677778888 8999999999998863 2 111 2356778888999999999999999987643221 122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHh
Q 008925 417 TIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHR 462 (548)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (548)
.+...+-++...|+.-.|.+.+++..+.+|.+..-..-.....|.+
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 3344455677889999999999999888877765433334444444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0013 Score=54.93 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 137 TYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD--AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSG 214 (548)
Q Consensus 137 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (548)
.+..++..+...|++++|...|++..+....+. ...+..++.++...|++++|...+++..+.... +...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 344444444444555555555554443321111 234444445555555555555555554443221 33334444444
Q ss_pred HHhcCC
Q 008925 215 YCKEGN 220 (548)
Q Consensus 215 ~~~~g~ 220 (548)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 444444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0083 Score=48.51 Aligned_cols=130 Identities=14% Similarity=0.060 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHH
Q 008925 96 KPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQ-PDAVTYN 174 (548)
Q Consensus 96 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~ 174 (548)
.|++...-.|..++.+.|+..+|...|++.... -+-.|......+.++....+++..|...++++.+.+.. .++.+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 466666667778888888888888888877653 35566777777777888888888888888887765310 1234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008925 175 TLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFL 228 (548)
Q Consensus 175 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 228 (548)
.+.+.+...|.+.+|+.-|+...+.-+ +...--.....+.+.|+.+++..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~yp--g~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYP--GPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcchhHHHHHH
Confidence 667788888888888888888777543 3333333444556667665554433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.2e-05 Score=44.76 Aligned_cols=32 Identities=34% Similarity=0.824 Sum_probs=15.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 008925 348 FTTVISGWCNAVKMQRAMSIYEKMCEIGINPN 379 (548)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 379 (548)
|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0013 Score=57.73 Aligned_cols=101 Identities=12% Similarity=0.141 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc---cCChHHHHHHHHHHHHcCCCCCHHHH
Q 008925 307 EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN---AVKMQRAMSIYEKMCEIGINPNLKTY 383 (548)
Q Consensus 307 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~ 383 (548)
|.|...|..|...|...|+.+.|..-|.+..+.. .++...+..+..++.. .....++..+|++++..+ +.|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 6667777777777777777777777777776642 3345555555555432 223566777777777765 5566666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 384 ETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 66777777777777777777777764
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00029 Score=63.91 Aligned_cols=129 Identities=12% Similarity=0.100 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008925 277 TFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR-AGEPQKAESILTSMRKYGVHPNVVMFTTVISGW 355 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 355 (548)
+|..++....+.+..+.|..+|.++.+.+ ..+..+|...+..-.. .++.+.|..+|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444444444445555555555554322 2223333333333222 33344455555555443 233344444455555
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 356 CNAVKMQRAMSIYEKMCEIGINPNL---KTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
...++.+.|..+|++.+.. ++++. ..|...+..-.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555443 12211 2444444444455555555555554444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.1e-05 Score=44.28 Aligned_cols=33 Identities=39% Similarity=0.536 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 008925 382 TYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK 414 (548)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 414 (548)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999999997
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.4e-05 Score=43.78 Aligned_cols=32 Identities=41% Similarity=0.637 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 008925 382 TYETLLWGYGEAKQPWRAEELLQVMEEKGVRP 413 (548)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 413 (548)
+|+.++.+|.+.|+++.|..+|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00055 Score=62.14 Aligned_cols=133 Identities=8% Similarity=0.087 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINA-CSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKG 108 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (548)
.+|..+++..-+.+..+.|+.+|.++.+.+ ..+..+|...... +...++.+.|.++|+...+. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666777777777777777777776442 2233344443333 22345556677777777665 45566667777777
Q ss_pred HhccCChHHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008925 109 YGNVGKPEESLKLLQLMSQDKNVKP-NDRTYNILVRAWCSKNSIEEAWNVVYKMVAS 164 (548)
Q Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 164 (548)
+...++.+.|..+|++....-.... ....|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777765411111 1236666666666667777777766666654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.024 Score=50.12 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=29.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HH---HHHHHHHHhccCChHHHHHHHHHhhhCC
Q 008925 70 MINACSESGNVDEAMKIFQKMKDSGCKPTT-ST---YNTLIKGYGNVGKPEESLKLLQLMSQDK 129 (548)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 129 (548)
....+...|++++|.+.|+++... .|+. .. .-.++.++.+.+++++|...+++..+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 334444556666666666666553 1221 11 1234455556666666666666665543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.03 Score=51.00 Aligned_cols=306 Identities=17% Similarity=0.165 Sum_probs=200.8
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChHHHHH
Q 008925 10 PHEAHYIFNCLIEEGHRPTLITYTTLVAALT--RQKRFKSILSLISKVEKDGMKPDSILFNAMINAC--SESGNVDEAMK 85 (548)
Q Consensus 10 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~ 85 (548)
+..+...|..-.+. ..|..|-..+. -.||-..|.++-.+..+. +..|...+..|+.+. .-.|+++.|.+
T Consensus 69 P~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~ 141 (531)
T COG3898 69 PYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARK 141 (531)
T ss_pred cHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHH
Confidence 34455666654432 23445544443 568888888888776543 345666666666544 45799999999
Q ss_pred HHHHHHhcCCCCCHHHHH----HHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 008925 86 IFQKMKDSGCKPTTSTYN----TLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKM 161 (548)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 161 (548)
-|+.|.. |+.+-. .|.-.-.+.|..+.|.++-+..... -+.-...+...+...+..|+++.|+++++.-
T Consensus 142 kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 142 KFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 9999986 333332 2333334679999999988887654 2344578899999999999999999999987
Q ss_pred HHCC-CCCCHHH--HHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 162 VASG-IQPDAVT--YNTLARAY---AQYGETYRAEQMLFEMQNNQVRPNERT-CGIIVSGYCKEGNMEDAMRFLYRMKEL 234 (548)
Q Consensus 162 ~~~~-~~~~~~~--~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~ 234 (548)
.... +.++..- -..|+.+- .-..+...|...-.+..+. .||..- -..-..++.+.|+..++-.+++.+-+.
T Consensus 215 ~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 215 RAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 6543 2334321 12232221 1223566676666655543 444322 223347788999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 008925 235 EVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEF-GVKP-DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHV 312 (548)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 312 (548)
..+|++. .. ..+.+.|+ .+..-++..... ..+| +..+...+..+-...|++..|..--+..... .|....
T Consensus 293 ePHP~ia--~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~ 364 (531)
T COG3898 293 EPHPDIA--LL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESA 364 (531)
T ss_pred CCChHHH--HH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhH
Confidence 6555542 21 12334443 444444443322 1333 4566777888888999999998888877765 688888
Q ss_pred HHHHHHHHHHc-CCHhHHHHHHHHHHhC
Q 008925 313 FSILAKGYVRA-GEPQKAESILTSMRKY 339 (548)
Q Consensus 313 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 339 (548)
|..|...-... |+-.++...+.+..+.
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 88888766554 9999999999998874
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.1e-05 Score=43.20 Aligned_cols=32 Identities=41% Similarity=0.950 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 008925 66 LFNAMINACSESGNVDEAMKIFQKMKDSGCKP 97 (548)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 97 (548)
+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00015 Score=49.95 Aligned_cols=64 Identities=16% Similarity=0.026 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcc
Q 008925 380 LKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIG-LAREAKRVLKSAEEDR 445 (548)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 445 (548)
..+|..++..+...|++++|+..|++.++. .|+ ...+..++.++...| ++++|++.++++.+.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 445555555566666666666666665553 233 335555556666665 4666666666555443
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00067 Score=64.01 Aligned_cols=124 Identities=17% Similarity=0.166 Sum_probs=89.6
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008925 95 CKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNV-KPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTY 173 (548)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 173 (548)
.+.+......++..+....+.+.+..++.+....... .--..+..++++.|.+.|..++++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3456666777777777777788888887777654211 112345568888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008925 174 NTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKE 218 (548)
Q Consensus 174 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (548)
+.|+..+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888777666555666666655555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00015 Score=49.12 Aligned_cols=60 Identities=15% Similarity=0.002 Sum_probs=38.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 386 LLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
++..+...|++++|+..|+++++.. |+ ...+..++.++...|++++|+.+++++.+.+|.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4455666777777777777776643 43 336666677777777777777777776655543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0055 Score=54.17 Aligned_cols=184 Identities=9% Similarity=0.068 Sum_probs=114.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSIL---FNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNT 104 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 104 (548)
+...+...+..+...|++++|.+.|+++.... |-+... .-.++.++.+.+++++|...+++..+.........+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 45555556777788999999999999998863 323332 24567888999999999999999988632111223333
Q ss_pred HHHHHhc--cC---------------C---hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008925 105 LIKGYGN--VG---------------K---PEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVAS 164 (548)
Q Consensus 105 l~~~~~~--~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 164 (548)
.+.+.+. .+ + ..+|+..|+++.+. -|+. .-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~S-------------~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPNS-------------QYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcCC-------------hhHHHHHHHHHHHHHH
Confidence 3333221 11 1 23566666666654 2332 2233444433333221
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 165 GIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQ--VRPNERTCGIIVSGYCKEGNMEDAMRFLYRMK 232 (548)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 232 (548)
=...-..+.+.|.+.|.+..|..-++.+.+.- .+........++.+|...|..++|..+...+.
T Consensus 174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 01111246677888888888888888888752 23345667778888888899888888776554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0013 Score=54.81 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 137 TYNILVRAWCSKNSIEEAWNVVYKMVASGIQP--DAVTYNTLARAYAQYGETYRAEQMLFEMQN 198 (548)
Q Consensus 137 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 198 (548)
.+..++..+...|++++|+..|++.+.....+ ...++..+..++...|++++|+..++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444555555555555544332111 122444455555555555555555555444
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00065 Score=64.09 Aligned_cols=124 Identities=15% Similarity=0.147 Sum_probs=85.1
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 008925 235 EVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEF--GVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHV 312 (548)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 312 (548)
+.+.+......++..+....+.+.+..++..+... ....-+.|..++++.|...|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556666777777777777777777777776654 2222234556778888888888888888887777788888888
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 008925 313 FSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA 358 (548)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 358 (548)
++.|+..+.+.|++..|.++...|...+...+..++.-.+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888877776655555555554444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00019 Score=49.40 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 008925 345 VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK-QPWRAEELLQVMEE 408 (548)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 408 (548)
...|..++..+...|++++|+..|+++++.. +.+...|..+..+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4456666666666666666666666666654 445556666666666666 56666666666554
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.066 Score=52.57 Aligned_cols=337 Identities=13% Similarity=0.093 Sum_probs=190.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCC--------CHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCC
Q 008925 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDS-GCKP--------TTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNV 131 (548)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 131 (548)
.|.+..|..|.......-.++.|...|-+.... |++. +...-.+=+.+ --|++++|+++|-.+.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh---
Confidence 577888998888877777888888877765442 2211 00011111222 248899999999887543
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008925 132 KPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD----AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERT 207 (548)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 207 (548)
| ..+..+.+.|++-...++++.- |-..| ...++.+...+.....|++|.+.|..-...
T Consensus 764 --D-----LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------- 825 (1189)
T KOG2041|consen 764 --D-----LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------- 825 (1189)
T ss_pred --h-----hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------
Confidence 2 3456677788887776665431 11111 457888888899999999999988765321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 208 CGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSS 287 (548)
Q Consensus 208 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 287 (548)
...+.++.+..++++-..+.+.+ +.+....-.+..++.+.|.-++|.+.+-+... |. ..+..|..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHH
Confidence 23566677777777665555443 45566777788888888888888776643221 11 34567778
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHH--------------HHHHHHHHcCCHhHHHHHHHHHHh----CCCCCCHH---
Q 008925 288 AGLMGKCQEIFDDMVKAGIEPDIHVFS--------------ILAKGYVRAGEPQKAESILTSMRK----YGVHPNVV--- 346 (548)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~--------------~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~--- 346 (548)
.+++.+|.++.++.. -|...+.. --|..+.+.|+.-.|-+++.+|-+ .+.+|-..
T Consensus 891 LnQW~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~Kkl 966 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKL 966 (1189)
T ss_pred HHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHH
Confidence 888888887766543 22222211 123445566665556666655543 23322211
Q ss_pred -HHHHHH-HHH----------hccCChHHHHHHHHHHHHc-------CCCCCHHHHH--HHHHHHHhcCChHHHHHHHHH
Q 008925 347 -MFTTVI-SGW----------CNAVKMQRAMSIYEKMCEI-------GINPNLKTYE--TLLWGYGEAKQPWRAEELLQV 405 (548)
Q Consensus 347 -~~~~l~-~~~----------~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~ 405 (548)
.+.+++ .-+ -.+|..++|..+++.-.-. +.-.....|. .|..--...|..+.|+..--.
T Consensus 967 YVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~ 1046 (1189)
T KOG2041|consen 967 YVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALI 1046 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhh
Confidence 111111 111 1356666777655543321 0111222333 333344456777777765544
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHHc---CCHHHHHHHHH
Q 008925 406 MEEK-GVRPKKSTIQLVADSWRAI---GLAREAKRVLK 439 (548)
Q Consensus 406 ~~~~-~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~ 439 (548)
+.+. .+-|...+|..++-+-+.. |--.+|.--++
T Consensus 1047 L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1047 LSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred hccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 4432 2445566776665554444 44444444333
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00014 Score=49.86 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=28.5
Q ss_pred cccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008925 5 VGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKD 58 (548)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 58 (548)
++.|++++|+..|+.+.+..+. +...+..++.++.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555555555555554333 4455555555555555555555555555543
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.001 Score=48.90 Aligned_cols=81 Identities=16% Similarity=0.363 Sum_probs=63.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHhcCCCCCHHH
Q 008925 31 TYTTLVAALTRQKRFKSILSLISKVEKDGM-KPDSILFNAMINACSESG--------NVDEAMKIFQKMKDSGCKPTTST 101 (548)
Q Consensus 31 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~ 101 (548)
+....+..+...+++...-.+|+.+.+.|+ -|+..+|+.++...++.. ++-+.+.+++.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556667777999999999999999998 889999999998776542 34567788888888888888888
Q ss_pred HHHHHHHHhc
Q 008925 102 YNTLIKGYGN 111 (548)
Q Consensus 102 ~~~l~~~~~~ 111 (548)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.004 Score=47.70 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=51.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHH
Q 008925 34 TLVAALTRQKRFKSILSLISKVEKDGMKPD--SILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT----TSTYNTLIK 107 (548)
Q Consensus 34 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~ 107 (548)
.+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|+.+|++..... |+ ......+..
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHH
Confidence 344555566677777777777666654433 2245555566666677777777776665531 22 222223344
Q ss_pred HHhccCChHHHHHHHHHh
Q 008925 108 GYGNVGKPEESLKLLQLM 125 (548)
Q Consensus 108 ~~~~~g~~~~A~~~~~~~ 125 (548)
++...|+.++|++.+-..
T Consensus 84 ~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 555666666666665544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0044 Score=47.48 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=22.6
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVHPN--VVMFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+|++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444333222 11333344444444444444444444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.049 Score=49.67 Aligned_cols=277 Identities=16% Similarity=0.099 Sum_probs=169.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCH
Q 008925 148 KNSIEEAWNVVYKMVASGIQPDAVTYNTLAR--AYAQYGETYRAEQMLFEMQNNQVRPNERTC----GIIVSGYCKEGNM 221 (548)
Q Consensus 148 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~ 221 (548)
.|+-..|.+.-.+..+. +..|......|+. .-.-.|+++.|.+-|+.|.. |+.+- ..|.-..-+.|+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 45666666555544322 2234443333433 23346777777777777765 22222 2222223456777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcC-CCCCHH--HHHHHHHHH---HhCCChhHHH
Q 008925 222 EDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFG-VKPDVV--TFSTIMDAW---SSAGLMGKCQ 295 (548)
Q Consensus 222 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~---~~~~~~~~a~ 295 (548)
+.|..+-++.-..- +--...+...+...+..|+++.|+++++.-.... +.++.. .-..|+.+- .-..+...|.
T Consensus 171 eaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 77777777665532 2334677777777788888888888777544332 223321 111222211 1223566777
Q ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH--
Q 008925 296 EIFDDMVKAGIEPDIH-VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMC-- 372 (548)
Q Consensus 296 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 372 (548)
..-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+...+|++. . +....+.|+ .++.-++++.
T Consensus 250 ~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~--lY~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--L--LYVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--H--HHHHhcCCC--cHHHHHHHHHHH
Confidence 777777665 55543 33444578889999999999999998876555542 2 222344454 3444344433
Q ss_pred -HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 008925 373 -EIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAI-GLAREAKRVLKSAE 442 (548)
Q Consensus 373 -~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 442 (548)
... +.+..+...+..+-...|++..|..--+...+ ..|....|..+.+.-... |+-.++..++-+..
T Consensus 322 ~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 322 ESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 222 44567777888888889999888887776665 478888888888887655 99999999998877
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0039 Score=54.93 Aligned_cols=101 Identities=10% Similarity=0.117 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHhHHHHHHHHHHhCCCCCCHHHHH
Q 008925 273 PDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAG---EPQKAESILTSMRKYGVHPNVVMFT 349 (548)
Q Consensus 273 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~ 349 (548)
-|...|..|..+|...|+++.|..-|....+.. ++++..+..+..++.... .-.++..+|+++++.+ +-|+.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 366777777777777888888877777777765 566667777766655433 2346777777777754 33555666
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcC
Q 008925 350 TVISGWCNAVKMQRAMSIYEKMCEIG 375 (548)
Q Consensus 350 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 375 (548)
-|...+...|++.+|...|+.|++..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 66777777788888888888887764
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00031 Score=47.62 Aligned_cols=55 Identities=11% Similarity=-0.026 Sum_probs=26.8
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 353 SGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
..+...|++++|++.|+++++.. |-+...+..++.++...|++++|...|+++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555443 33444455555555555555555555555543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00057 Score=46.80 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=32.4
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 008925 41 RQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDS 93 (548)
Q Consensus 41 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (548)
+.|++++|+++|+++.... |.+...+..+..+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666666666553 335556666666666666666666666666654
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00094 Score=49.05 Aligned_cols=75 Identities=12% Similarity=0.342 Sum_probs=65.0
Q ss_pred ccccccCChhhHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008925 2 NILVGKGKPHEAHYIFNCLIEEGH-RPTLITYTTLVAALTRQK--------RFKSILSLISKVEKDGMKPDSILFNAMIN 72 (548)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 72 (548)
..+...+++..-..+|+.+.+.|+ -|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+.++.
T Consensus 33 ~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~ 112 (120)
T PF08579_consen 33 NSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLG 112 (120)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 345677999999999999999998 899999999999988643 34578999999999999999999999998
Q ss_pred HHHh
Q 008925 73 ACSE 76 (548)
Q Consensus 73 ~~~~ 76 (548)
.+.+
T Consensus 113 ~Llk 116 (120)
T PF08579_consen 113 SLLK 116 (120)
T ss_pred HHHH
Confidence 7754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00018 Score=40.11 Aligned_cols=26 Identities=27% Similarity=0.801 Sum_probs=10.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 348 FTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
|+.++.+|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0041 Score=55.40 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=51.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC-CHHHHHHH
Q 008925 348 FTTVISGWCNAVKMQRAMSIYEKMCEIGINPN----LKTYETLLWGYGEAKQPWRAEELLQVMEEK-GVRP-KKSTIQLV 421 (548)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l 421 (548)
|......+.+.|++++|+..|+.+++.. |+ ...+..++.+|...|++++|...|+.+.+. .-.| ....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333344466666666666666542 22 234555666666666666666666666542 1111 13345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 422 ADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
+.++...|+.++|.+.+++..+..|
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5666666666666666666655544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00019 Score=40.06 Aligned_cols=28 Identities=25% Similarity=0.692 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 008925 66 LFNAMINACSESGNVDEAMKIFQKMKDS 93 (548)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (548)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444455555444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.025 Score=48.63 Aligned_cols=173 Identities=14% Similarity=0.128 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH--HHHHHH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGM--KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTT--STYNTL 105 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l 105 (548)
..+-..+..+...|++.+|.+.|+.+...-. +--....-.++.++.+.|+++.|...+++.++.- |+. ..+...
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y 83 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHH
Confidence 3344455556666777777777777665421 1112344555666667777777777777766541 211 111111
Q ss_pred HHHHh--c-----------cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 008925 106 IKGYG--N-----------VGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVT 172 (548)
Q Consensus 106 ~~~~~--~-----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 172 (548)
+.+.+ . .+...+|...|+.+... |-.+.-..+|...+..+.+. =...
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~~~----la~~ 143 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELRNR----LAEH 143 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHH----HHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHHHH----HHHH
Confidence 11111 1 11223444444444432 22233334444443333221 0111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 008925 173 YNTLARAYAQYGETYRAEQMLFEMQNNQVRP--NERTCGIIVSGYCKEGNMEDA 224 (548)
Q Consensus 173 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 224 (548)
-..+++.|.+.|.+..|..-++.+++.-+.. .......++.+|.+.|..+.+
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 1224566667777777777666666552211 123445566666666666643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.016 Score=46.47 Aligned_cols=87 Identities=11% Similarity=0.076 Sum_probs=42.9
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 320 YVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRA 399 (548)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 399 (548)
+...|++++|..+|.-+.-.++ -+..-|..|..++-..+++++|+..|..+...+ ..|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 3345555555555555544331 233344455555555555555555555554433 23333344445555555555555
Q ss_pred HHHHHHHHH
Q 008925 400 EELLQVMEE 408 (548)
Q Consensus 400 ~~~~~~~~~ 408 (548)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 555555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.026 Score=48.58 Aligned_cols=173 Identities=16% Similarity=0.153 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCH-HHHHHHHH
Q 008925 67 FNAMINACSESGNVDEAMKIFQKMKDSGC--KPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPND-RTYNILVR 143 (548)
Q Consensus 67 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~ 143 (548)
+-.....+...|++.+|.+.|+.+...-. +-.....-.++.++.+.|++++|...++++.+..+-.|.. ..+-.++.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33444556677777777777777765411 1123445556667777777777777777766643222222 11111111
Q ss_pred HHHh-----------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008925 144 AWCS-----------KNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIV 212 (548)
Q Consensus 144 ~~~~-----------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 212 (548)
++.. .+...+|...|+.+++ -|-...-..+|...+..+.+. =...-..+.
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~---------------~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia 148 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIK---------------RYPNSEYAEEAKKRLAELRNR----LAEHELYIA 148 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHH---------------H-TTSTTHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHH---------------HCcCchHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 1111 1112233333433333 333333334444444333221 011112245
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhhH
Q 008925 213 SGYCKEGNMEDAMRFLYRMKELEVHPN---LVVFNSLIKGFLDIKDSDGV 259 (548)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 259 (548)
..|.+.|.+..|..-++.+++.- |.+ ......++.+|.+.|..+.+
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y-p~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY-PDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhCChHHH
Confidence 66777777777777777776642 211 23556666777777766643
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.012 Score=50.36 Aligned_cols=150 Identities=13% Similarity=0.031 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 008925 44 RFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQ 123 (548)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 123 (548)
..+..++++++-. ..+.+.++.++.-.|.+.-...++.+.++...+.++.....|++.-.+.|+.+.|...|+
T Consensus 164 ~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 164 AEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred chhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3366666666533 234556677777777888888888888776556677777778888888888888888888
Q ss_pred HhhhCCC----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 124 LMSQDKN----VKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNN 199 (548)
Q Consensus 124 ~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 199 (548)
+..+..+ ..-+..........+.-.+++..|...+.+.+... +.|+..-|.-.-+..-.|+..+|.+.++.+...
T Consensus 237 ~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 237 DVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6654332 22222233333445666778888888888877764 345555555555555577888888888888776
Q ss_pred CC
Q 008925 200 QV 201 (548)
Q Consensus 200 ~~ 201 (548)
.+
T Consensus 316 ~P 317 (366)
T KOG2796|consen 316 DP 317 (366)
T ss_pred CC
Confidence 43
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.14 Score=47.78 Aligned_cols=412 Identities=12% Similarity=0.087 Sum_probs=224.8
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH
Q 008925 21 IEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTS 100 (548)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 100 (548)
++.++ .|..+|..|+.-+..++..++..+++++|..- ++--..+|...+++-...+++.....+|.+.+... .+..
T Consensus 35 IkdNP-tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ld 110 (660)
T COG5107 35 IKDNP-TNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLD 110 (660)
T ss_pred hhcCc-hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHh
Confidence 33443 48899999999999999999999999999764 45556688888888888899999999999988763 3566
Q ss_pred HHHHHHHHHhccC-----Ch-HHHHHHHHHhhhCCCCCCC-HHHHHHHHH---HHHhCC------CHHHHHHHHHHHHHC
Q 008925 101 TYNTLIKGYGNVG-----KP-EESLKLLQLMSQDKNVKPN-DRTYNILVR---AWCSKN------SIEEAWNVVYKMVAS 164 (548)
Q Consensus 101 ~~~~l~~~~~~~g-----~~-~~A~~~~~~~~~~~~~~~~-~~~~~~l~~---~~~~~g------~~~~a~~~~~~~~~~ 164 (548)
.|...+.--.+.+ +- -.-.+.|+-...-.++.|- ...|+..+. ..-..| +++...+.+.+++..
T Consensus 111 LW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t 190 (660)
T COG5107 111 LWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT 190 (660)
T ss_pred HHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC
Confidence 6666655433332 11 1112333333332233332 233443333 222233 345556666666654
Q ss_pred CCCCCHHHHH------HHHHHHHh-------cCCHHHHHHHHHHHHhC--CCC----CCHHHHHH-----------HHHH
Q 008925 165 GIQPDAVTYN------TLARAYAQ-------YGETYRAEQMLFEMQNN--QVR----PNERTCGI-----------IVSG 214 (548)
Q Consensus 165 ~~~~~~~~~~------~l~~~~~~-------~g~~~~a~~~~~~~~~~--~~~----~~~~~~~~-----------l~~~ 214 (548)
.+..=...|+ .=+..... .--+..|.+.++++... |.. .+..+++. .|..
T Consensus 191 P~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkw 270 (660)
T COG5107 191 PMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKW 270 (660)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhH
Confidence 2111111111 11111100 11234566666655421 211 11122221 2211
Q ss_pred HHh-----cCCH-H-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHH-HHHHHH
Q 008925 215 YCK-----EGNM-E-DAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFST-IMDAWS 286 (548)
Q Consensus 215 ~~~-----~g~~-~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 286 (548)
-.. .|++ . ..--++++.... +.-.+..|----.-+...++-..|.+......... |+ ++. +...|.
T Consensus 271 E~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~s--ps---L~~~lse~ye 344 (660)
T COG5107 271 EMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMS--PS---LTMFLSEYYE 344 (660)
T ss_pred hhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCC--Cc---hheeHHHHHh
Confidence 111 1111 1 111223333321 23334445444444555566666666655444332 22 111 111122
Q ss_pred hCCChhHHHHHHHHHHH--------------cCC---------------CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 008925 287 SAGLMGKCQEIFDDMVK--------------AGI---------------EPDIHVFSILAKGYVRAGEPQKAESILTSMR 337 (548)
Q Consensus 287 ~~~~~~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 337 (548)
-..+.+.....|+.... .+. ..-..+|..++..-.+....+.|..+|-++.
T Consensus 345 l~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 345 LVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLR 424 (660)
T ss_pred hcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 22222222222221110 000 1123355666776677777889999999998
Q ss_pred hCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--
Q 008925 338 KYG-VHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-- 414 (548)
Q Consensus 338 ~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-- 414 (548)
+.+ +.+++..+++++.-++. |+...|-.+|+--+.. ++.+.......+.-+.+-++-+.|..+|+..++. +..+
T Consensus 425 k~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~ 501 (660)
T COG5107 425 KEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQL 501 (660)
T ss_pred ccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhh
Confidence 887 56677788888887664 7888899999876654 2333333445566677888888899999876643 2333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008925 415 KSTIQLVADSWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 415 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
..+|..+++--..-|+...|..+-+++.+..
T Consensus 502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 502 KRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred hHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 4578888888888898888877777765543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.13 Score=47.35 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=12.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHH
Q 008925 32 YTTLVAALTRQKRFKSILSLIS 53 (548)
Q Consensus 32 ~~~l~~~~~~~g~~~~a~~~~~ 53 (548)
|..+.......|+.+-|..+++
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~ 24 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLE 24 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHH
Confidence 4445555555566666665554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.013 Score=47.53 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=53.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCCHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME-----EKGVRPKKSTIQL 420 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~ 420 (548)
+...++..+...|++++|..+.++++... |-+...|..++.+|...|+..+|.+.|+++. +.|+.|+..+-..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 45556677778899999999999999876 6778889999999999999999999998874 4688888776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0091 Score=49.96 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 362 QRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
+-|++++++|...|+-||..++..|+..+++
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 3344444444444444444444444444433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0093 Score=49.92 Aligned_cols=88 Identities=16% Similarity=0.349 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CChHHHH
Q 008925 26 RPTLITYTTLVAALTR-----QKRFKSILSLISKVEKDGMKPDSILFNAMINACSES----------------GNVDEAM 84 (548)
Q Consensus 26 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~A~ 84 (548)
..+-.+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3467778888887764 466777777888888888888888888888876542 1234566
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 008925 85 KIFQKMKDSGCKPTTSTYNTLIKGYGNVG 113 (548)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (548)
+++++|...|+-||..++..++..+.+.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 66666666666666666666666665544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.058 Score=50.14 Aligned_cols=181 Identities=15% Similarity=0.131 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 008925 242 VFNSLIKGFLDIKDSDGVDKALTLMEEFG---VKPDVVTFSTIMDAWSS---AGLMGKCQEIFDDMVKAGIEPDIHVFSI 315 (548)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 315 (548)
+...++-+|....+++..+++.+.+.... +......-...+.++.+ .|+.++|+.++..++...-.+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33455556777777777777777776641 11112222233444555 6777777777777554444666666666
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008925 316 LAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQ 395 (548)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (548)
++..|-.. |. +.+.. |. ...++|+..|.+.-+. .|+..+=..++..+...|.
T Consensus 223 ~GRIyKD~---------~~---~s~~~-d~-------------~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 223 LGRIYKDL---------FL---ESNFT-DR-------------ESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHH---------HH---HcCcc-ch-------------HHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCC
Confidence 66554221 00 00000 11 1145555555555543 2333322222222222222
Q ss_pred hH----HHHHHH---HH-HHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q 008925 396 PW----RAEELL---QV-MEEKGV---RPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPN 450 (548)
Q Consensus 396 ~~----~A~~~~---~~-~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 450 (548)
.. +..++- .. ..+.|. ..+.-.+..++.+..-.|+.++|.+..+++....+..|-
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 11 111111 11 112222 233445556777888888888888888888877766664
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.013 Score=46.88 Aligned_cols=91 Identities=14% Similarity=0.053 Sum_probs=76.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008925 351 VISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGL 430 (548)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 430 (548)
...-+-..|++++|..+|+-+.-.+ +-+..-|..|..++-..+++++|+..|......+ .-|+......+.++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 3444567899999999999998876 5678888999999999999999999999887543 2344456668899999999
Q ss_pred HHHHHHHHHHHHh
Q 008925 431 AREAKRVLKSAEE 443 (548)
Q Consensus 431 ~~~A~~~~~~~~~ 443 (548)
.+.|+..|+.+.+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999876
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0033 Score=43.65 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=23.6
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 355 WCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
|.+.+++++|.++++.++..+ |.+...+...+.++...|++++|...|++..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444432 33334444444444444444444444444443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.019 Score=51.18 Aligned_cols=94 Identities=9% Similarity=-0.086 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHcC--CCCCHHHHHHH
Q 008925 313 FSILAKGYVRAGEPQKAESILTSMRKYGVHPNV----VMFTTVISGWCNAVKMQRAMSIYEKMCEIG--INPNLKTYETL 386 (548)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l 386 (548)
|......+.+.|++++|...|+.+.+. .|+. ..+..++..|...|++++|...|+.+++.. -+.....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 333333334445566666666555553 2322 244455555555666666666666665431 01123334444
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 008925 387 LWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
+..+...|++++|..+|++.++
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555566666666666666554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.021 Score=51.38 Aligned_cols=166 Identities=11% Similarity=0.053 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC---C--CCHH
Q 008925 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEF-GVKP---DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI---E--PDIH 311 (548)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~ 311 (548)
..|..+..++.+..++.+++.+-+.-... |..| .......+..++...+.++++++.|+.+.+... . ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34555555555555555565555443332 1111 112334466777788889999999988875311 1 1245
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHh----CCCCCCH------HHHHHHHHHHhccCChHHHHHHHHHHHH----cCCC
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRK----YGVHPNV------VMFTTVISGWCNAVKMQRAMSIYEKMCE----IGIN 377 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~ 377 (548)
++..|...|.+..|+++|.-+..++.+ .++. |. .+.-.|..++...|+.-+|.+.-+++.+ .|-.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 788899999999999999877766643 2221 21 1233455667788888888888877664 3422
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008925 378 PN-LKTYETLLWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 378 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (548)
+- ......+.+.|...|+.+.|..-|+++.
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 21 2345678889999999999888887764
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.04 Score=52.02 Aligned_cols=145 Identities=10% Similarity=0.017 Sum_probs=101.7
Q ss_pred ChhHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHc---------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 008925 290 LMGKCQEIFDDMV---KAGIEPDIHVFSILAKGYVRA---------GEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN 357 (548)
Q Consensus 290 ~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 357 (548)
..+.|..+|.+++ ..+ |.....|..+..++... .+..+|.+..+...+.+ +-|......++.+...
T Consensus 273 ~~~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 3567888888888 332 22345666555544322 23456777888888875 4477788888887788
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHH
Q 008925 358 AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK---STIQLVADSWRAIGLAREA 434 (548)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A 434 (548)
.++.+.|...|+++...+ |....+|......+...|+.++|.+.+++..+. .|.. .+....++.|+.. .+++|
T Consensus 351 ~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred hcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhh
Confidence 888999999999999875 555677888888888899999999999997763 4543 2444444555544 47888
Q ss_pred HHHHHH
Q 008925 435 KRVLKS 440 (548)
Q Consensus 435 ~~~~~~ 440 (548)
++++-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 888755
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0015 Score=46.19 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 381 KTYETLLWGYGEAKQPWRAEELLQVMEEK--GVR---PK-KSTIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
.++..+...|...|++++|+..|++.++. ... |+ ..++..++.++...|++++|+++++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777777777777777766532 011 22 33566777778888888888888877654
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.28 Score=45.97 Aligned_cols=376 Identities=14% Similarity=0.174 Sum_probs=202.9
Q ss_pred HHHHHHH--HHccCCHHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--
Q 008925 32 YTTLVAA--LTRQKRFKSILSLISKVEKD--GMKP------------DSILFNAMINACSESGNVDEAMKIFQKMKDS-- 93 (548)
Q Consensus 32 ~~~l~~~--~~~~g~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 93 (548)
|..+..+ +.+.+.+.+|++.+..-... +..+ |-..=+..+..+...|++.+++.+++++...
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 4444443 45789999999999887654 2221 1122245567788999999999999998765
Q ss_pred --CCCCCHHHHHHHHHHHhccCC---------------hHHHHHHHHHhhhCC-----CCCCCHHHHHHHHHHHHhC--C
Q 008925 94 --GCKPTTSTYNTLIKGYGNVGK---------------PEESLKLLQLMSQDK-----NVKPNDRTYNILVRAWCSK--N 149 (548)
Q Consensus 94 --~~~~~~~~~~~l~~~~~~~g~---------------~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~--g 149 (548)
...-+..+|+.++-.+.++=- ++.+.-...++.... .+.|.......++....-. .
T Consensus 160 krE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e 239 (549)
T PF07079_consen 160 KRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKE 239 (549)
T ss_pred hhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHh
Confidence 333688899987776654310 111111111111100 0111111111111111110 0
Q ss_pred CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHH
Q 008925 150 SIEEAWNVVYKMVASGIQPDA-VTYNTLARAYAQYGETYRAEQMLFEMQNNQVRP----NERTCGIIVSGYCKEGNMEDA 224 (548)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A 224 (548)
+..--.++++.-...-+.|+. .....|...+.. +.+++..+-+.+....+.+ =..++..++....+.++...|
T Consensus 240 ~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a 317 (549)
T PF07079_consen 240 RLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEA 317 (549)
T ss_pred hccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 111111122222122223332 222333333333 6666766666665442211 135677778888899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHH-------HHHHHHH-cCCChhhH---HHHHHHHHHcCCCCCHHHHHHHH---HHHHhCCC
Q 008925 225 MRFLYRMKELEVHPNLVVFN-------SLIKGFL-DIKDSDGV---DKALTLMEEFGVKPDVVTFSTIM---DAWSSAGL 290 (548)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~-------~l~~~~~-~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~ 290 (548)
.+.+.-+...+ |+...-. .+....+ ...++... ..+|+.....++. .......++ .-+.+.|.
T Consensus 318 ~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~ 394 (549)
T PF07079_consen 318 KQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQ 394 (549)
T ss_pred HHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCC
Confidence 99998877653 4433211 1222222 11222222 3334444443322 112222222 33455565
Q ss_pred -hhHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHH---cCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHH--Hh
Q 008925 291 -MGKCQEIFDDMVKAGIEPDIHVFSILA----KGYVR---AGEPQKAESILTSMRKYGVHPNV----VMFTTVISG--WC 356 (548)
Q Consensus 291 -~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~--~~ 356 (548)
-++|+.+++.+++.. +-|...-+... ..|.. ...+..-+.+-+-+.+.|++|-. ..-|.|.++ +-
T Consensus 395 ~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 395 CDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred ccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 889999999998764 34444333322 22322 22344444555555667776643 234444433 45
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008925 357 NAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQL 420 (548)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 420 (548)
.+|++.++.-+-.-..+ +.|++.+|..++-++....++++|..+++.+ +|+..++..
T Consensus 474 sqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred hcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 68999998876555555 5789999999999999999999999999764 677766654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.022 Score=51.19 Aligned_cols=168 Identities=14% Similarity=0.056 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-----CCCHH
Q 008925 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKA-GIEP---DIHVFSILAKGYVRAGEPQKAESILTSMRKYGV-----HPNVV 346 (548)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~ 346 (548)
..|..+.+++.+..++.+++.+-..-... |..| --.....+..++...+.++++++.|+.+.+... -....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34556666666666777777666554432 1111 123445577788888899999999998876311 11234
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHc----CCCCCHH-----HHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCC
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEI----GINPNLK-----TYETLLWGYGEAKQPWRAEELLQVME----EKGVRP 413 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p 413 (548)
++..|...|.+..++++|.-+..++.+. ++..=.. ....+..++...|..-.|.+..++.. +.|-.|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 7888999999999999999988887753 2211111 23455677888898888998888765 455444
Q ss_pred CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 414 KKS-TIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 414 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
... .+..+++.|...|+.+.|..-++++..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 433 667889999999999999998888763
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.003 Score=43.89 Aligned_cols=59 Identities=20% Similarity=-0.018 Sum_probs=50.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 387 LWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
...|.+.+++++|.+++++++..+ +.+...+...+.++...|++++|.+.++++.+..|
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 457889999999999999999853 23455888899999999999999999999986665
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.25 Score=42.77 Aligned_cols=138 Identities=10% Similarity=0.068 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH-----HHHHH
Q 008925 277 TFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVV-----MFTTV 351 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~l 351 (548)
..+.++..+.-.+.+.-....+.+.++.+.+.++.....|++.-.+.||.+.|..+|+...+..-..|.. .....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666666677777777888888877656677777888888888888888888888666532222222 22333
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008925 352 ISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKST 417 (548)
Q Consensus 352 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 417 (548)
...|.-.+++..|...+.+....+ +.|+...+.-.-+..-.|+...|++.++.|++. .|.+.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccch
Confidence 344556677888888888887765 556666666555666678888888888888764 454443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.003 Score=44.62 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=31.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEI--GIN---PN-LKTYETLLWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (548)
+++.+...|...|++++|+..|+++++. ... |+ ..++..++.+|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555666665555555532 011 11 2345555666666666666666666554
|
... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.16 Score=48.24 Aligned_cols=100 Identities=15% Similarity=0.116 Sum_probs=58.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEIGINP--NLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSW 425 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~ 425 (548)
..+..++.+.|+.++|++.|+++.+.. ++ +......|+.++...+.+.++..++.+-.+...+.+.. .|...+-..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 445556667777777777777776542 22 23355667777777777777777777654432222222 233222122
Q ss_pred HHcCC---------------HHHHHHHHHHHHhccCCCC
Q 008925 426 RAIGL---------------AREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 426 ~~~g~---------------~~~A~~~~~~~~~~~~~~~ 449 (548)
...|+ -..|.+.+.++.+-+|.+|
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 22222 2346788889888888877
|
The molecular function of this protein is uncertain. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.58 Score=45.68 Aligned_cols=375 Identities=10% Similarity=0.026 Sum_probs=203.3
Q ss_pred hhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHH
Q 008925 11 HEAHYIFNCLIEEGHRPTLI-TYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACS-ESGNVDEAMKIFQ 88 (548)
Q Consensus 11 ~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~ 88 (548)
+.+..+++.++.. .|... -|......=.+.|..+.+.++|++.... ++.+...|......+. ..|+.+.....|+
T Consensus 62 ~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 62 DALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4455566666643 35553 4566666666788888899999888764 6777777777766554 5678888888888
Q ss_pred HHHhc-CCC-CCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh-----CCCHHHHHHHHHHH
Q 008925 89 KMKDS-GCK-PTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCS-----KNSIEEAWNVVYKM 161 (548)
Q Consensus 89 ~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~ 161 (548)
.+... |.. .+...|...|..-...+++.....+|+++...+...- ...|.......-. ....+++.++-...
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~-~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~ 217 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQL-NRHFDRFKQLLNQNEEKILLSIDELIQLRSDV 217 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHh-HHHHHHHHHHHhcCChhhhcCHHHHHHHhhhH
Confidence 88764 211 2445778888877788888888888888876310000 1111111111111 12233333332222
Q ss_pred HH--------------------CCCCCCH--HHHHHHHHH-------HHhcCCHHHHHHHHHHHHhCC---CC----CCH
Q 008925 162 VA--------------------SGIQPDA--VTYNTLARA-------YAQYGETYRAEQMLFEMQNNQ---VR----PNE 205 (548)
Q Consensus 162 ~~--------------------~~~~~~~--~~~~~l~~~-------~~~~g~~~~a~~~~~~~~~~~---~~----~~~ 205 (548)
.. .+-+.+. ...+.+... +...-...+....++.-.+.. ++ ++.
T Consensus 218 ~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql 297 (577)
T KOG1258|consen 218 AERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL 297 (577)
T ss_pred HhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH
Confidence 21 0000010 111111111 111111222222233222221 11 234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 206 RTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAW 285 (548)
Q Consensus 206 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 285 (548)
.+|..-+.--...|+.+.+.-+|++..-- ...-...|-..+.-....|+.+-+..++....+...+..+.+-..-....
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 55666666677888888888888887531 11122344444444445588888877777666654443333322223334
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH---HHHHHHhCCCCCCHHHHHHHHHH-----Hhc
Q 008925 286 SSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAES---ILTSMRKYGVHPNVVMFTTVISG-----WCN 357 (548)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~p~~~~~~~l~~~-----~~~ 357 (548)
-..|++..|..+++.+...- +.-..+-..-+....+.|+.+.+.. ++........ +......+..- +.-
T Consensus 377 e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHH
Confidence 56678899999888888763 2223333344555667777777763 3333322111 11122222211 223
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008925 358 AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK 394 (548)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 394 (548)
.++.+.|..++.++.+.- +++...|..+++.+...+
T Consensus 454 ~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 577888888888888863 777777877777766554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.096 Score=46.23 Aligned_cols=155 Identities=12% Similarity=0.092 Sum_probs=107.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC
Q 008925 35 LVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGK 114 (548)
Q Consensus 35 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 114 (548)
-.......|++..|..+|....... +-+...-..+..+|...|+++.|..++..+...--.........-+..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3455678899999999999998764 334566777889999999999999999998654211112222234555666666
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008925 115 PEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGI-QPDAVTYNTLARAYAQYGETYRAEQML 193 (548)
Q Consensus 115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 193 (548)
..+...+-.+.-.. +.|...-..+...+...|+.+.|.+.+-.+++.+. ..|...-..|+..+...|.-+.+...+
T Consensus 219 ~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 219 TPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 66666666666543 45778888889999999999999998888776521 235666777888887777444333333
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.48 Score=44.24 Aligned_cols=82 Identities=11% Similarity=0.067 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHc---CCChhhHHHHHHHHHHcCCCCCHHHH
Q 008925 205 ERTCGIIVSGYCKEGNMEDAMRFLYRMKELE---VHPNLVVFNSLIKGFLD---IKDSDGVDKALTLMEEFGVKPDVVTF 278 (548)
Q Consensus 205 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 278 (548)
..+...++-.|....+++..+++++.+.... +......-...+-++.+ .|+.++|..++..+......+++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3344456667889999999999999998742 11223333344556666 79999999999986666667788888
Q ss_pred HHHHHHHH
Q 008925 279 STIMDAWS 286 (548)
Q Consensus 279 ~~l~~~~~ 286 (548)
..++..|-
T Consensus 221 gL~GRIyK 228 (374)
T PF13281_consen 221 GLLGRIYK 228 (374)
T ss_pred HHHHHHHH
Confidence 88887764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.02 Score=46.27 Aligned_cols=71 Identities=18% Similarity=0.400 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh----CCCCCCCHHH
Q 008925 66 LFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQ----DKNVKPNDRT 137 (548)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~ 137 (548)
....++..+...|++++|..+.+.+.... +-+...|..+|.+|...|+..+|++.|+++.+ .-|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445555666666666666666666542 33555666666666666666666666655532 2245555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.74 Score=46.13 Aligned_cols=109 Identities=9% Similarity=0.107 Sum_probs=67.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 313 FSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
.+--+.-+...|+-.+|.++-.+.+ -||-..|---+.+++..+++++-+++-+... .+.-|.-.+.+|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 3344445556677777777766665 3666666666777777777766444333221 24556667777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008925 393 AKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 393 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (548)
.|+.++|.+++-+... .. ..+.+|.+.|++.+|.+..-+
T Consensus 757 ~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 7777777777765422 11 355667777777777766544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.12 Score=50.34 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH-------
Q 008925 274 DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVV------- 346 (548)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------- 346 (548)
+..++..+..-+.+...+..|-++|..+-.. ..+++.....++|++|..+-+...+. .||+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 3445555555556667777788888776432 24566777888888888888777653 34432
Q ss_pred ----HHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 347 ----MFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 347 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
-|...-.+|.+.|+..+|.++++++..
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122233466777778888888777664
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.019 Score=52.77 Aligned_cols=91 Identities=21% Similarity=0.129 Sum_probs=57.5
Q ss_pred ccccccCChhhHHHHHHHHHHC-----CCC---------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008925 2 NILVGKGKPHEAHYIFNCLIEE-----GHR---------PTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILF 67 (548)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 67 (548)
+.+.+.|++..|...|+.++.. +.. .-..+++.|..++.+.+++..|++..++.+..+ ++|+..+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3577888888888888887652 111 112245556666666666666666666666654 4455555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc
Q 008925 68 NAMINACSESGNVDEAMKIFQKMKDS 93 (548)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (548)
..-..+|...|+++.|+..|+++++.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 55666666666666666666666664
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.041 Score=50.61 Aligned_cols=138 Identities=10% Similarity=0.039 Sum_probs=72.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 008925 282 MDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKM 361 (548)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 361 (548)
...+.+.|++..|...|++++..= . |...-+.++.... .. .-..+++.+..++.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l--~-----------~~~~~~~ee~~~~-~~-------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFL--E-----------YRRSFDEEEQKKA-EA-------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHh--h-----------ccccCCHHHHHHH-HH-------HHHHHhhHHHHHHHhhhhH
Confidence 445778888888888888776420 0 0000111111111 00 1223455556666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHH-HHHHHHH
Q 008925 362 QRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAR-EAKRVLK 439 (548)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~-~A~~~~~ 439 (548)
.+|+..-++.++.+ ++|...+---..+|...|+++.|+..|+++++. .|+.. +-..+..+-.+..... ...++|.
T Consensus 274 ~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 274 KEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655 556666555666666666666666666666653 44433 3333333333333332 2355666
Q ss_pred HHHh
Q 008925 440 SAEE 443 (548)
Q Consensus 440 ~~~~ 443 (548)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 6653
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.31 Score=43.12 Aligned_cols=153 Identities=12% Similarity=0.094 Sum_probs=94.1
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 008925 284 AWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQR 363 (548)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 363 (548)
.....|++..|..+|+...... +.+......++.+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4556788888888888887764 444566777888888888888888888877543111111121222334444444444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008925 364 AMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGV-RPKKSTIQLVADSWRAIGLAREAKRVLK 439 (548)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 439 (548)
...+-.+.-. + +.|...-..+...+...|+.+.|.+.+-.+++.+. .-|...-..++..+...|.-+.+...++
T Consensus 222 ~~~l~~~~aa-d-Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 222 IQDLQRRLAA-D-PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4444344433 1 44677777788888888888888887777764432 2344466667777766665444444444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.026 Score=49.21 Aligned_cols=101 Identities=11% Similarity=0.049 Sum_probs=71.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCC-HHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPN---LKTYETLLWGYGEAKQPWRAEELLQVMEE-KGVRPK-KSTIQLV 421 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~-~~~~~~l 421 (548)
.|+.-+..+ +.|++..|...|...++.. |.+ ...+-.|+.++...|++++|...|..+.+ .+-.|. ++.+..+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 455555443 4577888888888888753 222 23455678888888888888888888774 333344 3577788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 422 ADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
+.+..+.|+.++|...|++..+.+|..+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 8888888888888888888887776543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.45 Score=41.91 Aligned_cols=202 Identities=13% Similarity=0.048 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 008925 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEF-GVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAK- 318 (548)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 318 (548)
.........+...+++..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444444445555544444444331 112233344444444555555555666555555432111 111222222
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 008925 319 GYVRAGEPQKAESILTSMRKYGV--HPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINP-NLKTYETLLWGYGEAKQ 395 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 395 (548)
.+...|+++.|...+.+...... ......+......+...++.+.+...+.++.... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 55566666666666666644211 0122233333333555666777777777666643 23 35566666666666667
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 396 PWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 396 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
+++|...+...... .|+ ...+......+...|..+++...+.+..+..+
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 77777777666653 233 33444444444455667777777766654443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.39 Score=41.13 Aligned_cols=206 Identities=13% Similarity=0.167 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGY 109 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (548)
..|.....+|...++|++|...+.+..+. ...+...|+. ...++.|.-+.+++.+. +.-+..|+-....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34566666677777888887777766532 1223222222 12234455555555442 11233455555667
Q ss_pred hccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCC---HHHHHHHHHHHHhcC
Q 008925 110 GNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGI--QPD---AVTYNTLARAYAQYG 184 (548)
Q Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~---~~~~~~l~~~~~~~g 184 (548)
..+|.++.|-..+++.-+ ....-++++|+++|++....-. ..+ ...+....+.+.+..
T Consensus 102 ~E~GspdtAAmaleKAak-----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK-----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHhCCcchHHHHHHHHHH-----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 777777666666555432 1233445555555555432100 011 122333444555555
Q ss_pred CHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHcCCCh
Q 008925 185 ETYRAEQMLFEMQNN----QVRPN-ERTCGIIVSGYCKEGNMEDAMRFLYRMKELE---VHPNLVVFNSLIKGFLDIKDS 256 (548)
Q Consensus 185 ~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 256 (548)
.+.+|-..+.+-... .--++ -..+...|-.+.-..++..|..+++...+.+ .+.+..+...|+.+|- .|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCH
Confidence 665554444332110 00111 1223344445555667777777776643322 1233455666665553 3555
Q ss_pred hhHHHHH
Q 008925 257 DGVDKAL 263 (548)
Q Consensus 257 ~~a~~~~ 263 (548)
+++.+++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 5544443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.096 Score=49.60 Aligned_cols=120 Identities=10% Similarity=0.022 Sum_probs=92.5
Q ss_pred CHhHHHHHHHHHHh-CCCCCCH-HHHHHHHHHHh---------ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008925 325 EPQKAESILTSMRK-YGVHPNV-VMFTTVISGWC---------NAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEA 393 (548)
Q Consensus 325 ~~~~A~~~~~~~~~-~~~~p~~-~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (548)
..+.|+.+|.+... ....|+- ..|..+..++. ...+..+|.++-+++++.+ +.|+.....++.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 35678889999882 1234553 34444433322 2345678899999999988 78999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 394 KQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 394 g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
++++.|...|++.... .|+.. ++...+..+.-.|+.++|.+.++++.+.+|.
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 9999999999999884 67765 7888888899999999999999998876653
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.85 Score=44.60 Aligned_cols=135 Identities=11% Similarity=0.123 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIK 107 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 107 (548)
+...|..++.--....+.+.+..++..++.. .|.----|......=.+.|..+.+.++|++.++. ++.+...|.....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 3345666665555555667777788887765 3333446777777778899999999999999875 6667777777665
Q ss_pred HHh-ccCChHHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008925 108 GYG-NVGKPEESLKLLQLMSQDKNV-KPNDRTYNILVRAWCSKNSIEEAWNVVYKMVAS 164 (548)
Q Consensus 108 ~~~-~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 164 (548)
.+. ..|+.+...+.|+......|. -.+...|...+..-..++++.....++++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 554 457888888888888765432 234567888888888889999999999999874
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.74 Score=43.55 Aligned_cols=120 Identities=9% Similarity=0.027 Sum_probs=75.2
Q ss_pred ccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 6 GKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMK 85 (548)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 85 (548)
..|+...|-+-...+++..+ .++.............|+++.+.+.+...... +.....+...++....+.|+++.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~-~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQ-QDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCC-CCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 45666665444444444322 23333333445566778899888888776554 34455677788888888889999988
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhC
Q 008925 86 IFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQD 128 (548)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 128 (548)
+-+-|+...++ ++.........--..|-++++...++++...
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 88888776543 4444443333334456778888888877654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.056 Score=51.02 Aligned_cols=66 Identities=9% Similarity=0.009 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 008925 307 EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNV----VMFTTVISGWCNAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 307 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 374 (548)
+.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 557789999999999999999999999999985 4664 35899999999999999999999999985
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.23 Score=42.46 Aligned_cols=166 Identities=16% Similarity=0.211 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCH--HHHHHHHHHHhccCChHHHH
Q 008925 44 RFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDS--GCKPTT--STYNTLIKGYGNVGKPEESL 119 (548)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~--~~~~~l~~~~~~~g~~~~A~ 119 (548)
.++.|.-+.+++.+. +--+..++.....|..+|.++.|-..+++.-+. ++.|+. ..|..-+...-..++...|.
T Consensus 73 ayEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~ 150 (308)
T KOG1585|consen 73 AYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF 150 (308)
T ss_pred HHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 345566666666542 223456777778888889888888877776432 233332 12332223333333333333
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008925 120 KLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVAS----GIQPD-AVTYNTLARAYAQYGETYRAEQMLF 194 (548)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 194 (548)
++ +....+.+.+...+++|-..+.+-... .--++ -..|...|-.+.-..++..|...++
T Consensus 151 el----------------~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 151 EL----------------YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred HH----------------HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 33 334444566666666666555443211 00112 2335566667777889999999998
Q ss_pred HHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008925 195 EMQNNQ---VRPNERTCGIIVSGYCKEGNMEDAMRFL 228 (548)
Q Consensus 195 ~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 228 (548)
.--+.+ -..+..+...|+.+| ..|+.+++..++
T Consensus 215 ~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 215 DCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred chhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 754432 233567777888877 467887776654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.016 Score=54.45 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 343 PNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL----KTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 343 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
.+...++.+..+|...|++++|+..|+++++.+ |+. .+|..+..+|...|+.++|+..++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999964 553 35999999999999999999999999985
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.32 Score=47.86 Aligned_cols=115 Identities=12% Similarity=0.096 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHH
Q 008925 150 SIEEAWNVVYKMVASGIQPDAVTYNT-LARAYAQYGETYRAEQMLFEMQNNQ---VRPNERTCGIIVSGYCKEGNMEDAM 225 (548)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~ 225 (548)
..+.|.++++.+.+. -|+...|.. -.+.+...|+.++|.+.|+...... .......+.-++.++.-..+|++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 455556666665554 344433332 2344555566666666665433211 1112334444555566666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCh-------hhHHHHHHHHH
Q 008925 226 RFLYRMKELEVHPNLVVFNSLIKG-FLDIKDS-------DGVDKALTLME 267 (548)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-------~~a~~~~~~~~ 267 (548)
..|..+.+.. .-+...|..+..+ +...++. ++|.+++.++.
T Consensus 326 ~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 6666666543 2223333333222 2344555 55666665543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.19 Score=49.44 Aligned_cols=167 Identities=14% Similarity=0.104 Sum_probs=109.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH----HcCCHhHHHHHHHHHHhCCCCCCHHH
Q 008925 278 FSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDI------HVFSILAKGYV----RAGEPQKAESILTSMRKYGVHPNVVM 347 (548)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~ 347 (548)
+..++....-.|+-+.+++.+....+.+---.+ -.|...+..++ ...+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344555566667777777777766543211111 12222232222 245677899999999885 577666
Q ss_pred HH-HHHHHHhccCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-
Q 008925 348 FT-TVISGWCNAVKMQRAMSIYEKMCEIG---INPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVA- 422 (548)
Q Consensus 348 ~~-~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~- 422 (548)
|. .-.+.+...|+.++|++.|+++.... .+.....+.-+...+.-.+++++|.+.|.++.+.. .-+..+|..+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 64 34566778899999999999876421 12234456778888999999999999999998743 33455665554
Q ss_pred HHHHHcCCH-------HHHHHHHHHHHhccCC
Q 008925 423 DSWRAIGLA-------REAKRVLKSAEEDRQS 447 (548)
Q Consensus 423 ~~~~~~g~~-------~~A~~~~~~~~~~~~~ 447 (548)
.++...|+. ++|.+++++++.....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 455677888 8999999998855443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.36 Score=38.92 Aligned_cols=124 Identities=10% Similarity=0.102 Sum_probs=70.0
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHhccCCh
Q 008925 40 TRQKRFKSILSLISKVEKDGMKPDSI-LFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTS---TYNTLIKGYGNVGKP 115 (548)
Q Consensus 40 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~ 115 (548)
.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|... ....-.-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45566777777777777665443222 22333445566777777777777765543223221 111122334566777
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008925 116 EESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVAS 164 (548)
Q Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 164 (548)
+......+.+... +.+-....-..|.-+-.+.|++.+|.++|..+...
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 7777666666433 23333445556666666777777777777776654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.05 Score=47.48 Aligned_cols=96 Identities=14% Similarity=0.168 Sum_probs=64.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCHHHHHHH
Q 008925 31 TYTTLVAALTRQKRFKSILSLISKVEKDGMKPD---SILFNAMINACSESGNVDEAMKIFQKMKDSG--CKPTTSTYNTL 105 (548)
Q Consensus 31 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l 105 (548)
.|+.-+. +.+.|++..|...|...++.. |.+ ...+.-|..++...|+++.|..+|..+.+.- .+.-+..+.-|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4555444 445677888888888877653 211 2345557788888888888888888776641 11234666677
Q ss_pred HHHHhccCChHHHHHHHHHhhhC
Q 008925 106 IKGYGNVGKPEESLKLLQLMSQD 128 (548)
Q Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~ 128 (548)
..+..+.|+.++|..+|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 77777888888888888888775
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.054 Score=41.10 Aligned_cols=91 Identities=15% Similarity=0.127 Sum_probs=55.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHhcc
Q 008925 36 VAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTT---STYNTLIKGYGNV 112 (548)
Q Consensus 36 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 112 (548)
.-++...|+.+.|++.|.+.+.. .|.....||.-..++.-.|+.++|+.-+++.++..-..+. ..|.--...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34556667777777777776654 3445667777777777777777777777776654212222 2233344556666
Q ss_pred CChHHHHHHHHHhhh
Q 008925 113 GKPEESLKLLQLMSQ 127 (548)
Q Consensus 113 g~~~~A~~~~~~~~~ 127 (548)
|+.+.|..=|+...+
T Consensus 129 g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQ 143 (175)
T ss_pred CchHHHHHhHHHHHH
Confidence 777777766666654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.77 Score=45.15 Aligned_cols=87 Identities=9% Similarity=0.132 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----------
Q 008925 242 VFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIH---------- 311 (548)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------- 311 (548)
+...+...+.+...+.-|.++|..+-.. ..+.+.....+++++|..+.+...+. .||..
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 3333333444444455555555544331 23445555666666666666655443 22221
Q ss_pred -HHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 008925 312 -VFSILAKGYVRAGEPQKAESILTSMRKY 339 (548)
Q Consensus 312 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (548)
-+.-.-++|.+.|+-.+|..+++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1122234677778888888888887653
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.059 Score=44.95 Aligned_cols=195 Identities=14% Similarity=0.109 Sum_probs=98.9
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 008925 284 AWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQR 363 (548)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 363 (548)
.|-..|-+..|+-=|.+.+... |.-+.+||.|+--+...|+++.|.+.|+...+.+..-+-...|.-+. +---|+++-
T Consensus 74 lYDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~L 151 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKL 151 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHh
Confidence 3556666666666666666553 33355777777777777777777777777776543222222332222 233467777
Q ss_pred HHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHH
Q 008925 364 AMSIYEKMCEIGINPNLK--TYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVA-DSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 364 A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~ 440 (548)
|.+-|.+.-..+ +.|+. .|..+ --..-++.+|..-+.+--+ ..|.+-|...+ ..+ .|++.+ +.++++
T Consensus 152 Aq~d~~~fYQ~D-~~DPfR~LWLYl---~E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~y--LgkiS~-e~l~~~ 221 (297)
T COG4785 152 AQDDLLAFYQDD-PNDPFRSLWLYL---NEQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFY--LGKISE-ETLMER 221 (297)
T ss_pred hHHHHHHHHhcC-CCChHHHHHHHH---HHhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHH--HhhccH-HHHHHH
Confidence 776666665543 22221 12111 1223345555543332211 12333333222 222 222221 122222
Q ss_pred HHhccCCCCCcchhHHHHHHHhhccccccccccccccccccccCCCChhhhhhhhhhccccccc
Q 008925 441 AEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEHNGSSAAKIRSQIVLRSDTVW 504 (548)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~g~~w 504 (548)
+.+... .....++.+ ..+|+-||..|.+.|+.++|..+.|.....+-+.+
T Consensus 222 ~~a~a~-----~n~~~Ae~L---------TEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynf 271 (297)
T COG4785 222 LKADAT-----DNTSLAEHL---------TETYFYLGKYYLSLGDLDEATALFKLAVANNVYNF 271 (297)
T ss_pred HHhhcc-----chHHHHHHH---------HHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHH
Confidence 211100 011111111 13578899999999999999999998877763333
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.13 Score=39.07 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=52.7
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCC
Q 008925 354 GWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS---TIQLVADSWRAIGL 430 (548)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~ 430 (548)
++...|+.+.|++.|.+.+..- |.+...|+.-..++.-.|+.++|++-+++.++..-.-+.. .+..-+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3455666666666666666542 4455666666666666666666666666665421111111 23333455666677
Q ss_pred HHHHHHHHHHHHhcc
Q 008925 431 AREAKRVLKSAEEDR 445 (548)
Q Consensus 431 ~~~A~~~~~~~~~~~ 445 (548)
-+.|..-|+.+.+..
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777665444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.9 Score=44.09 Aligned_cols=172 Identities=10% Similarity=0.061 Sum_probs=91.4
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTL--ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV 80 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 80 (548)
.+.+...+.-|+.+.+.- +..++. ......+.-+.+.|++++|...|-+.... +.|.. ++.-|....+.
T Consensus 343 iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfLdaq~I 413 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKFLDAQRI 413 (933)
T ss_pred HHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHhcCHHHH
Confidence 455666677777765542 222222 12333344555778888888777665543 23322 34444555556
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008925 81 DEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYK 160 (548)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 160 (548)
.+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .+...-| ....+..+.+.+-.++|..+-.+
T Consensus 414 knLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHH
Confidence 6666777777777653 34445567778888877777666665543 1111112 33445555555666666554443
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008925 161 MVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEM 196 (548)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 196 (548)
... .......+ +-..+++++|++++..+
T Consensus 489 ~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred hcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 321 22222222 23445666666665544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.086 Score=40.90 Aligned_cols=48 Identities=19% Similarity=0.330 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 008925 96 KPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVR 143 (548)
Q Consensus 96 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (548)
.|+..+..+++.+|+..|++..|+++++...+..+++-+...|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344444444444444444444444444444444434434444444444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.17 Score=39.22 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 008925 341 VHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCE-IGINPNLKTYETLLWGYG 391 (548)
Q Consensus 341 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 391 (548)
..|+..+..+++.+|+..|++..|+++.+...+ .+++.+...|..|+.-+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456666677777777777777777777766654 355555666666665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.63 E-value=2.9 Score=42.19 Aligned_cols=342 Identities=14% Similarity=0.151 Sum_probs=184.4
Q ss_pred HHHhcCChHHHHHHHHHHH--------hcCCCCCHHHHH-----HHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHH
Q 008925 73 ACSESGNVDEAMKIFQKMK--------DSGCKPTTSTYN-----TLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYN 139 (548)
Q Consensus 73 ~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 139 (548)
++.+.-++++-..+...+. ..|++.+..-|. .++.-+...+.+..|+++-..+.... ......|.
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~ 475 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLL 475 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHH
Confidence 3445556666555554443 236666665554 45677778889999999887774321 11156677
Q ss_pred HHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHH
Q 008925 140 ILVRAWCSKNS--IEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR----PNERTCGIIVS 213 (548)
Q Consensus 140 ~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~ 213 (548)
.....+.+..+ -+++++.+++=+.... .+...|..+.+-....|+++-|..+++.=...+.. .+..-+...+.
T Consensus 476 ~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ 554 (829)
T KOG2280|consen 476 EWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALK 554 (829)
T ss_pred HHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHH
Confidence 77777766643 2334444443333222 45667888888888899999998887643222110 01111222233
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhH
Q 008925 214 GYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGK 293 (548)
Q Consensus 214 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 293 (548)
-+.+.|+.+-...++-.+... .+...+ +....+...|..++.++.+..-. . .+-+.|....+...
T Consensus 555 kaies~d~~Li~~Vllhlk~~---~~~s~l------~~~l~~~p~a~~lY~~~~r~~~~---~---~l~d~y~q~dn~~~ 619 (829)
T KOG2280|consen 555 KAIESGDTDLIIQVLLHLKNK---LNRSSL------FMTLRNQPLALSLYRQFMRHQDR---A---TLYDFYNQDDNHQA 619 (829)
T ss_pred HHHhcCCchhHHHHHHHHHHH---HHHHHH------HHHHHhchhhhHHHHHHHHhhch---h---hhhhhhhcccchhh
Confidence 334445555444444444331 111111 11122334466666665553211 1 12223333333333
Q ss_pred HHHHHHHH-HHc-CCCCCHHHHHHHHHHHHHcCCHh---HH-------HHHHHHHHh-CCCCCCHHHHHHHHHHHhccCC
Q 008925 294 CQEIFDDM-VKA-GIEPDIHVFSILAKGYVRAGEPQ---KA-------ESILTSMRK-YGVHPNVVMFTTVISGWCNAVK 360 (548)
Q Consensus 294 a~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~g~~~---~A-------~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~ 360 (548)
+-.+.-+- ... .+.+-..........+.+..... +| +.+.+.+.. .|..-..-+.+--+.-+...|+
T Consensus 620 ~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~ 699 (829)
T KOG2280|consen 620 LASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQ 699 (829)
T ss_pred hhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccc
Confidence 22222111 110 01222223334444454443321 11 222222222 2222233455666677788899
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008925 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (548)
..+|.++-.+.. -||...|..-+.+++..+++++-.++-+... ++.-|.-.+.+|.+.|+.+||.+++-+
T Consensus 700 ~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYipr 769 (829)
T KOG2280|consen 700 NKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPR 769 (829)
T ss_pred hHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhc
Confidence 999998877654 5788888888999999999988777665543 133455578899999999999999987
Q ss_pred HH
Q 008925 441 AE 442 (548)
Q Consensus 441 ~~ 442 (548)
..
T Consensus 770 v~ 771 (829)
T KOG2280|consen 770 VG 771 (829)
T ss_pred cC
Confidence 54
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.43 Score=42.89 Aligned_cols=154 Identities=13% Similarity=-0.016 Sum_probs=102.0
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHhccCCh
Q 008925 39 LTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDS---GCKPTTSTYNTLIKGYGNVGKP 115 (548)
Q Consensus 39 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 115 (548)
....|++.+|-..++++++. .|.|...+...-.+|.-.|+...-...++++... +++........+..++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34567788888888888776 5667777777778888888888888888887643 2222233334455566678888
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 008925 116 EESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD---AVTYNTLARAYAQYGETYRAEQM 192 (548)
Q Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~ 192 (548)
++|++.-++..+.+ +-|.....++...+-..|++.++.++..+-...--..+ ...|=...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 88888888877653 45667777777888888888888877766433211111 11222233455666888888888
Q ss_pred HHH
Q 008925 193 LFE 195 (548)
Q Consensus 193 ~~~ 195 (548)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 875
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.61 E-value=2.1 Score=41.13 Aligned_cols=59 Identities=10% Similarity=0.032 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 139 NILVRAWCSKNSIEEAWNVVYKMVASGIQ-PDAVTYNTLARAYAQYGETYRAEQMLFEMQ 197 (548)
Q Consensus 139 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 197 (548)
..+..++.+.|+.++|++.+++|.+.... ........|+.++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34444555556666666666665543211 122344455556666666666665555543
|
The molecular function of this protein is uncertain. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.5 Score=38.49 Aligned_cols=201 Identities=15% Similarity=0.067 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 008925 206 RTCGIIVSGYCKEGNMEDAMRFLYRMKEL-EVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMD- 283 (548)
Q Consensus 206 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 283 (548)
.........+...+.+..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444555555555666555555555431 123334445555555555555666666666555543222 111222222
Q ss_pred HHHhCCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCC
Q 008925 284 AWSSAGLMGKCQEIFDDMVKAGI--EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHP-NVVMFTTVISGWCNAVK 360 (548)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 360 (548)
.+...|+++.|...+.+...... ......+......+...++.+.+...+....... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56677777777777777755221 0123344444444667778888888888777642 22 35567777777777778
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
++.|...+..+.... +.....+..+...+...+..+++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888887753 222445555555555666788888888777753
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.46 Score=37.38 Aligned_cols=84 Identities=7% Similarity=0.110 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKP---DSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNT 104 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 104 (548)
+...+..-+....+.|++++|.+.|+.+..+ .|. .......|+.+|.+.+++++|...+++.++.........|..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3344455566667889999999999998876 232 244666788888999999999999999888642222234555
Q ss_pred HHHHHhcc
Q 008925 105 LIKGYGNV 112 (548)
Q Consensus 105 l~~~~~~~ 112 (548)
.+.+++..
T Consensus 88 Y~~gL~~~ 95 (142)
T PF13512_consen 88 YMRGLSYY 95 (142)
T ss_pred HHHHHHHH
Confidence 55554433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.043 Score=33.34 Aligned_cols=22 Identities=5% Similarity=0.025 Sum_probs=8.4
Q ss_pred HHHHhccCChHHHHHHHHHHHH
Q 008925 352 ISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 352 ~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
...|...|++++|+++|+++++
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333333333333333333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.37 Score=46.73 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008925 204 NERTCGIIVSGYCKEGNMEDAMRFLYRM 231 (548)
Q Consensus 204 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 231 (548)
+...|..|.....+.|+++-|.+.|.+.
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3444455555555555555555544443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.84 Score=41.13 Aligned_cols=155 Identities=9% Similarity=0.024 Sum_probs=114.9
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHH----HHHHHHHHhCC
Q 008925 74 CSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTY----NILVRAWCSKN 149 (548)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g 149 (548)
.-..|++.+|-..++++++. .|.|..++...=.++.-.|+.+.-...++++... ..++...| ..+.-++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhc
Confidence 44678999999999999876 4667778888888899999999999999888754 24555333 33344566789
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHH
Q 008925 150 SIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRP---NERTCGIIVSGYCKEGNMEDAMR 226 (548)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~ 226 (548)
-+++|.+.-++..+.+ +.|.-.-..+...+...|++.++.++..+-...--.. -..-|-...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999999999998876 5677777788888889999999998876644321111 12234444556677799999999
Q ss_pred HHHHHH
Q 008925 227 FLYRMK 232 (548)
Q Consensus 227 ~~~~~~ 232 (548)
+|+.-+
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 998653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.6 Score=45.32 Aligned_cols=133 Identities=15% Similarity=0.125 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 275 VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISG 354 (548)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 354 (548)
....+.++..+.+.|..+.|+.+.. |+. .-.....++|+++.|.++.++. ++...|..|...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 3445666777777777777776633 222 2234456777777776664432 356678888888
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008925 355 WCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREA 434 (548)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 434 (548)
...+|+++-|.+.|++..+ +..|+-.|.-.|+.+.-.++.+.....| -+.....++...|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence 8888888888877776543 4456666777777666666665555543 122222344445666666
Q ss_pred HHHHHH
Q 008925 435 KRVLKS 440 (548)
Q Consensus 435 ~~~~~~ 440 (548)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.42 E-value=1 Score=35.53 Aligned_cols=59 Identities=10% Similarity=0.113 Sum_probs=32.7
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 008925 316 LAKGYVRAGEPQKAESILTSMRKYGVH--PNVVMFTTVISGWCNAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 374 (548)
-.....+.|++++|.+.|+.+...-.. -....-..++.+|.+.+++++|...+++.++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344445566666666666666654110 11234445566666666666666666666664
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.35 E-value=1.1 Score=35.70 Aligned_cols=85 Identities=9% Similarity=0.139 Sum_probs=45.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc
Q 008925 33 TTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNV 112 (548)
Q Consensus 33 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (548)
..++..+...+........++.+...+ +.+....+.++..|++.+ ..+....++. . .+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~----~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K----SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c----cccCCHHHHHHHHHHc
Confidence 345555555666677777777666654 345556666666666543 2333333331 1 1222233455555555
Q ss_pred CChHHHHHHHHHh
Q 008925 113 GKPEESLKLLQLM 125 (548)
Q Consensus 113 g~~~~A~~~~~~~ 125 (548)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5666666555554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.93 Score=39.81 Aligned_cols=104 Identities=16% Similarity=0.302 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHc-----CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHH
Q 008925 308 PDIHVFSILAKGYVRA-----GEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKT 382 (548)
Q Consensus 308 ~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 382 (548)
-|..+|...+..+... +.++--...++.|.+.|+.-|..+|+.|+..+-+-.-. |. ..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~-nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQ-NV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cH-HH
Confidence 3455555555554322 33443444455566666666666666666555432110 10 01
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008925 383 YETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGL 430 (548)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 430 (548)
+....--|-++ -+=++.++++|...|+.||.++-..++.++.+.|-
T Consensus 128 fQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11111111111 22377888888888888888888888888877764
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.34 E-value=1.8 Score=37.85 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=45.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 385 TLLWGYGEAKQPWRAEELLQVMEEKGVRPK---KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
.+.+-|.+.|.+--|..-+++|++. .+-+ .+.+..+..+|...|..++|.+.-.-+....|..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 3567788889998899999998865 2211 3356677788889999999888877666555554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.24 E-value=2.8 Score=39.62 Aligned_cols=401 Identities=12% Similarity=0.113 Sum_probs=219.6
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV--- 80 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--- 80 (548)
|-.+|.+++-.++++++..- .+--..+|..-+..-...+++.....+|.+++... .+...|...+..-.+.+..
T Consensus 52 ~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl~YIRr~n~~~tG 128 (660)
T COG5107 52 LETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYLEYIRRVNNLITG 128 (660)
T ss_pred HhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHHHHHHhhCccccc
Confidence 44678899999999998752 12123578887887777889999999999998864 3466677666654443321
Q ss_pred ---HHHHHHHHHHHh-cCCCCC-HHHHHHHHHHHh---ccC------ChHHHHHHHHHhhhCCCCCCCH-HHHHHH----
Q 008925 81 ---DEAMKIFQKMKD-SGCKPT-TSTYNTLIKGYG---NVG------KPEESLKLLQLMSQDKNVKPND-RTYNIL---- 141 (548)
Q Consensus 81 ---~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---~~g------~~~~A~~~~~~~~~~~~~~~~~-~~~~~l---- 141 (548)
..-.+.|+-... .++.|- ...|+..+..+- ..| +++.....+.++...+ -.+. ..|+..
T Consensus 129 q~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP--~~nleklW~dy~~fE 206 (660)
T COG5107 129 QKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTP--MGNLEKLWKDYENFE 206 (660)
T ss_pred chhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCc--cccHHHHHHHHHHHH
Confidence 122334444333 234442 334554443332 223 3455556666665421 0111 111110
Q ss_pred --H-----HHHHh--CCCHHHHHHHHHHHHH--CCCC----CCHHH-----------HHHHHHHHHhc-----CC-H-HH
Q 008925 142 --V-----RAWCS--KNSIEEAWNVVYKMVA--SGIQ----PDAVT-----------YNTLARAYAQY-----GE-T-YR 188 (548)
Q Consensus 142 --~-----~~~~~--~g~~~~a~~~~~~~~~--~~~~----~~~~~-----------~~~l~~~~~~~-----g~-~-~~ 188 (548)
+ +-+.. .--+..|.+.+++... .|+. .+..+ |...|.--... |+ . ..
T Consensus 207 ~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qR 286 (660)
T COG5107 207 LELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQR 286 (660)
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHH
Confidence 0 01110 1123455555555432 1211 11222 22222211111 11 1 12
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH-
Q 008925 189 AEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLME- 267 (548)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~- 267 (548)
.--++++.... +...+..|..-..-+...++-+.|+......... .|+... -+...|--..+.+.....|+...
T Consensus 287 i~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~--~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 287 IHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTM--FLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchhe--eHHHHHhhcccHHHHhhhHHHHHH
Confidence 22334444332 2224444444444455566666666665544331 222111 11111111111111111111100
Q ss_pred ------Hc-------CC---------------CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHH
Q 008925 268 ------EF-------GV---------------KPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG-IEPDIHVFSILAK 318 (548)
Q Consensus 268 ------~~-------~~---------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~ 318 (548)
.. +. ..-...|...+....+..-++.|..+|-++.+.+ ..+++.++++++.
T Consensus 362 ~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E 441 (660)
T COG5107 362 DLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIE 441 (660)
T ss_pred HHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHH
Confidence 00 00 0112356667777778888999999999999988 5677888899998
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCC
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVHPNVVMF-TTVISGWCNAVKMQRAMSIYEKMCEIGINPN--LKTYETLLWGYGEAKQ 395 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 395 (548)
-++ .|++..|..+|+--... .||...| +..+..+...++-..|..+|+..++. +..+ ...|..++.--..-|+
T Consensus 442 ~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~ 517 (660)
T COG5107 442 YYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGS 517 (660)
T ss_pred HHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcc
Confidence 665 67899999999876664 4666655 56677778889999999999987753 2333 4678888888888999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHH
Q 008925 396 PWRAEELLQVMEEKGVRPKKSTIQL 420 (548)
Q Consensus 396 ~~~A~~~~~~~~~~~~~p~~~~~~~ 420 (548)
...+..+-++|.+. .|...+...
T Consensus 518 lN~v~sLe~rf~e~--~pQen~~ev 540 (660)
T COG5107 518 LNNVYSLEERFREL--VPQENLIEV 540 (660)
T ss_pred hHHHHhHHHHHHHH--cCcHhHHHH
Confidence 98888888888763 455444433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.19 E-value=2.4 Score=38.61 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCChhhHHH---HHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 008925 242 VFNSLIKGFLDIKDSDGVDK---ALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKA 304 (548)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (548)
++..++.+|...+..+...+ +++.+...... .+..+..-+..+.+.++.+.+.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 44455555555554443332 33333222111 2233334444444455555666666655544
|
It is also involved in sporulation []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.14 E-value=2 Score=37.47 Aligned_cols=173 Identities=14% Similarity=0.152 Sum_probs=86.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc
Q 008925 36 VAALTRQKRFKSILSLISKVEKDGMKP---DSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNV 112 (548)
Q Consensus 36 ~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (548)
+..-.+.|++++|.+.|+.+.... +- ...+...++.++.+.++++.|+..+++....-.......|...+.+++..
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Confidence 344456677777777777776552 22 23345555566667777777777777776642111122343344443321
Q ss_pred -------CCh---HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHH
Q 008925 113 -------GKP---EESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTY--NTLARAY 180 (548)
Q Consensus 113 -------g~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~ 180 (548)
.+. ..|..-|+.+.+. -|+.. -...|...+..+. |.... ..+.+.|
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~r---yPnS~-------------Ya~dA~~~i~~~~------d~LA~~Em~IaryY 177 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQR---YPNSR-------------YAPDAKARIVKLN------DALAGHEMAIARYY 177 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHH---CCCCc-------------chhhHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 111 2222333333322 12211 0011111111110 00000 2355677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 181 AQYGETYRAEQMLFEMQNNQVRPN---ERTCGIIVSGYCKEGNMEDAMRFLYRMK 232 (548)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 232 (548)
.+.|.+..|..-++.|++. .+-+ ...+-.+..+|...|-.++|...-.-+.
T Consensus 178 ~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 178 LKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 8888888888888877776 2222 2344556677777787777766654443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.1 Score=34.36 Aligned_cols=61 Identities=15% Similarity=0.300 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 008925 314 SILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIG 375 (548)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 375 (548)
...+..+...|.-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.++.+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333444555555555555555554322 3455555555556666666666666666665555
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.5 Score=41.39 Aligned_cols=87 Identities=15% Similarity=0.321 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------ChHHHHH
Q 008925 27 PTLITYTTLVAALTR-----QKRFKSILSLISKVEKDGMKPDSILFNAMINACSESG----------------NVDEAMK 85 (548)
Q Consensus 27 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~A~~ 85 (548)
.|-.+|...+..+.. .+..+-.-..++.|.+.|+..|..+|+.|++.+-+.. +-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 344556555555543 2445555666666777777777777777776654321 2234555
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 008925 86 IFQKMKDSGCKPTTSTYNTLIKGYGNVG 113 (548)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (548)
++++|...|+.||..+-..|+.++.+.+
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 5555555555555555555555555544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.1 Score=34.35 Aligned_cols=135 Identities=13% Similarity=0.179 Sum_probs=61.9
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHH
Q 008925 147 SKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTC---GIIVSGYCKEGNMED 223 (548)
Q Consensus 147 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~ 223 (548)
-.|..++..++..+...+ .+..-+|-++--....-+-+-..++++.+-+. .|.... ..++.+|...|.
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT----
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhcc---
Confidence 456666777777766653 24444444444333334444444444444321 122211 122333333322
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 008925 224 AMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVK 303 (548)
Q Consensus 224 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (548)
+.......+..+...|+-+...+++..+.+. -.+++..+..+..+|.+.|+..++.+++.++-+
T Consensus 85 ---------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 85 ---------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 2222333344555666666666666666542 245666666666777777777777777776666
Q ss_pred cCC
Q 008925 304 AGI 306 (548)
Q Consensus 304 ~~~ 306 (548)
.|+
T Consensus 149 kG~ 151 (161)
T PF09205_consen 149 KGL 151 (161)
T ss_dssp TT-
T ss_pred hch
Confidence 653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.91 E-value=3.2 Score=38.48 Aligned_cols=79 Identities=10% Similarity=0.135 Sum_probs=37.7
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 008925 317 AKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQP 396 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (548)
+.-+...|+...|.++-.+.. -|+...|-..+.+++..++|++-.++-.. .-++..|..++.+|...|..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 333444555555555444432 24555555555555555555544433211 11224455555555555555
Q ss_pred HHHHHHHHH
Q 008925 397 WRAEELLQV 405 (548)
Q Consensus 397 ~~A~~~~~~ 405 (548)
.+|..+..+
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 555555544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.09 Score=31.93 Aligned_cols=26 Identities=35% Similarity=0.597 Sum_probs=12.0
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHh
Q 008925 313 FSILAKGYVRAGEPQKAESILTSMRK 338 (548)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (548)
+..+...|...|++++|+++|+++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.4 Score=36.64 Aligned_cols=90 Identities=17% Similarity=0.077 Sum_probs=65.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCHHHH-----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008925 351 VISGWCNAVKMQRAMSIYEKMCEIGINPNLKTY-----ETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSW 425 (548)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 425 (548)
+...+...+++++|..-++..+.. |....+ ..|.+.....|.+++|+..++.....+.. ......-++++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHH
Confidence 445677889999999999888763 222222 34566778889999999988876553322 22344567899
Q ss_pred HHcCCHHHHHHHHHHHHhcc
Q 008925 426 RAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 426 ~~~g~~~~A~~~~~~~~~~~ 445 (548)
...|+.++|+..|+++.+..
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 99999999999999988665
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.88 E-value=3 Score=38.02 Aligned_cols=163 Identities=11% Similarity=0.141 Sum_probs=86.9
Q ss_pred ccccCChhhHHHHHHHHHHCC--CCCCHH-----HHHHHHHHHHccC-CHHHHHHHHHHHHHC--------CCCCCH---
Q 008925 4 LVGKGKPHEAHYIFNCLIEEG--HRPTLI-----TYTTLVAALTRQK-RFKSILSLISKVEKD--------GMKPDS--- 64 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~-----~~~~l~~~~~~~g-~~~~a~~~~~~~~~~--------~~~~~~--- 64 (548)
..++|+++.|..++.++.... ..|+.. .+..++......+ +++.|..++++..+. ...|+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357889999999999887643 122221 2333444445566 887777777665432 122332
Q ss_pred --HHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHH
Q 008925 65 --ILFNAMINACSESGNVD---EAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYN 139 (548)
Q Consensus 65 --~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 139 (548)
.++..++.+|...+..+ +|..+++.+... .+-.+.++..-+..+.+.++.+++.+.+.+|..... -....+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~--~~e~~~~ 159 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD--HSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc--cccchHH
Confidence 35556666676666544 444455555433 222244454556666667777777777777776522 1223333
Q ss_pred HHHHHH---HhCCCHHHHHHHHHHHHHCCCCCCH
Q 008925 140 ILVRAW---CSKNSIEEAWNVVYKMVASGIQPDA 170 (548)
Q Consensus 140 ~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~ 170 (548)
..+..+ .. .....+...++.++...+.|..
T Consensus 160 ~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 160 SILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 333332 22 2234455555555444334443
|
It is also involved in sporulation []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.04 Score=31.20 Aligned_cols=30 Identities=23% Similarity=0.172 Sum_probs=14.3
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 369 EKMCEIGINPNLKTYETLLWGYGEAKQPWRA 399 (548)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 399 (548)
+++++.. |.|...|..|+..|...|++++|
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhh
Confidence 3444433 34445555555555555555544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.12 Score=29.08 Aligned_cols=30 Identities=17% Similarity=0.094 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 417 TIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
+|..++.++...|++++|+..++++.+.+|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 455666666666666666666666665544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.085 Score=31.47 Aligned_cols=35 Identities=31% Similarity=0.389 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q 008925 416 STIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPN 450 (548)
Q Consensus 416 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 450 (548)
.++..++.+|...|++++|+.+++++.+....+.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G 37 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERLLG 37 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhc
Confidence 46677788888888888888888887765554443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.41 E-value=2.1 Score=34.16 Aligned_cols=123 Identities=15% Similarity=0.093 Sum_probs=70.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 008925 280 TIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAV 359 (548)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 359 (548)
.++..+...+.......+++.+...+ +.+....+.++..|++.. ..+....++. .++......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 45556666677777777777777665 456667777777777653 3344444442 123333445666677777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008925 360 KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEA-KQPWRAEELLQVMEEKGVRPKKSTIQLVADSW 425 (548)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 425 (548)
.++++.-++.++-. ... .+..+... ++++.|.+++.+ ..+...|..++..+
T Consensus 84 l~~~~~~l~~k~~~-----~~~----Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~ 135 (140)
T smart00299 84 LYEEAVELYKKDGN-----FKD----AIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKAL 135 (140)
T ss_pred cHHHHHHHHHhhcC-----HHH----HHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHH
Confidence 77777777766532 111 22222223 667777776654 12445555555444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.34 E-value=6.8 Score=39.79 Aligned_cols=17 Identities=12% Similarity=0.087 Sum_probs=10.5
Q ss_pred hCCCHHHHHHHHHHHHH
Q 008925 147 SKNSIEEAWNVVYKMVA 163 (548)
Q Consensus 147 ~~g~~~~a~~~~~~~~~ 163 (548)
...+.+.|+.+|+.+.+
T Consensus 261 ~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 34566666666666655
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.15 Score=28.70 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 416 STIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 416 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
..+..++.++...|++++|++.++++.+.+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3456677777777777777777777765554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.059 Score=30.49 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=17.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 008925 17 FNCLIEEGHRPTLITYTTLVAALTRQKRFKSIL 49 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 49 (548)
|+++++..|. +..+|+.++..+...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3444444332 5556666666666666666554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.22 E-value=14 Score=43.00 Aligned_cols=318 Identities=10% Similarity=0.016 Sum_probs=167.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 008925 69 AMINACSESGNVDEAMKIFQKMKDSGC--KPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWC 146 (548)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (548)
.+..+-.+.+.+..|...++.-..... ......+..+...|...++++...-+...-.. .|+ ...-+-...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~s---l~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPS---LYQQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Ccc---HHHHHHHHH
Confidence 445566678889999999988311100 11223444555589999999988877764222 233 223344566
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHH
Q 008925 147 SKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGII-VSGYCKEGNMEDAM 225 (548)
Q Consensus 147 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~ 225 (548)
..|++..|...|+.+.+.+ ++...+++-++......|.+....-..+-...... +....++.+ +.+--+.++++...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~s-e~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRS-EEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccC-HHHHHHHHHHHHHHhhhcchhhhh
Confidence 7899999999999999875 44477888888888888888877776655544322 223333332 34445677777766
Q ss_pred HHHHHHHhCCCCCCHHHHHH--HHHHHHcCCChhh--HHHHHHHHHHcCCCC---------CHHHHHHHHHHHHhCCChh
Q 008925 226 RFLYRMKELEVHPNLVVFNS--LIKGFLDIKDSDG--VDKALTLMEEFGVKP---------DVVTFSTIMDAWSSAGLMG 292 (548)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~--a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~ 292 (548)
.... + .+..+|.. ++........-+. -.+..+.+.+.-+.| -...|..++....-..-
T Consensus 1539 ~~l~---~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-- 1609 (2382)
T KOG0890|consen 1539 SYLS---D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-- 1609 (2382)
T ss_pred hhhh---c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH--
Confidence 6654 1 12222322 2333222222111 112222222211110 01223333322221110
Q ss_pred HHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH-HhC----CCCC-CHHHHHHHHHHHhccCChH
Q 008925 293 KCQEIFDDMVKAG----IEPDIHVFSILAKGYVRAGEPQKAESILTSM-RKY----GVHP-NVVMFTTVISGWCNAVKMQ 362 (548)
Q Consensus 293 ~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 362 (548)
....+...+.. ...+..-|..-+..-....+..+-+--+++. ... +... -..+|....+.....|+++
T Consensus 1610 --~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1610 --ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred --HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 00111111110 0111111212221111111122211111111 111 1111 2357888888888899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 363 RAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
.|...+-.+.+.+ -+..+...+..+...|+...|+.++++.++.
T Consensus 1688 ~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999888888765 3345666778888999999999999998854
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.20 E-value=4.4 Score=37.08 Aligned_cols=134 Identities=13% Similarity=0.160 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc--cC----ChHHHHHHHHHhhhCCCC--CCCHHHHHHHHHHHHhCCC-
Q 008925 80 VDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGN--VG----KPEESLKLLQLMSQDKNV--KPNDRTYNILVRAWCSKNS- 150 (548)
Q Consensus 80 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~- 150 (548)
+++.+.+++.+.+.|+..+..+|-+....... .. ...+|..+|+.|.+...+ .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556788888888888887666554333333 11 356778888888776432 2233444444433 2333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008925 151 ---IEEAWNVVYKMVASGIQPDAV--TYNTLARAYAQYGE--TYRAEQMLFEMQNNQVRPNERTCGIIVSGY 215 (548)
Q Consensus 151 ---~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 215 (548)
.+.+..+|+.+.+.|+..+.. ....++........ ..++.++++.+.+.++++....|..++-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 345666777777766654432 22222222221111 346667777777777776666665555433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.79 Score=40.93 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCCHHHHHH
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME-----EKGVRPKKSTIQL 420 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~ 420 (548)
.++..++..+...|+.+.+...+++..... +-+...|..++.+|.+.|+...|+..|+++. +.|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345556666666677777777777776654 5566667777777777777777777776654 3566666665544
Q ss_pred HHH
Q 008925 421 VAD 423 (548)
Q Consensus 421 l~~ 423 (548)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.97 E-value=8.1 Score=39.27 Aligned_cols=272 Identities=15% Similarity=0.102 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhc
Q 008925 151 IEEAWNVVYKMVASGIQPDAVTYNTLARA-----YAQYGETYRAEQMLFEMQN-------NQVRPNERTCGIIVSGYCKE 218 (548)
Q Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 218 (548)
...|.++++...+.| +......++.+ +....+.+.|..+++.+.+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567999999988876 33333333333 3355789999999998876 44 344666778888764
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH----
Q 008925 219 G-----NMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLD---IKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWS---- 286 (548)
Q Consensus 219 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 286 (548)
. +.+.|..++.+..+.| .|+... .+...+.. ..+...|.+++...-..|.. ..+-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 3 6788999999998876 333332 33333332 24567899999998888733 22323333332
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH-HH---Hh--c--c
Q 008925 287 SAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVI-SG---WC--N--A 358 (548)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~---~~--~--~ 358 (548)
-..+.+.|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+...|.. ...+-...+ .. .. . .
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~ 452 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVI 452 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccc
Confidence 2237889999999999887 3332222222333333 7777777777766665432 221111111 11 11 1 2
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCC
Q 008925 359 VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEA----KQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRA----IGL 430 (548)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 430 (548)
.+...+...+.+....| +......|...|... .+++.|...+......+ ......++..+-. ..
T Consensus 453 ~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~- 524 (552)
T KOG1550|consen 453 STLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV- 524 (552)
T ss_pred cchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-
Confidence 35667777788877755 666666777666543 35788888888887654 3344444443322 23
Q ss_pred HHHHHHHHHHHHhcc
Q 008925 431 AREAKRVLKSAEEDR 445 (548)
Q Consensus 431 ~~~A~~~~~~~~~~~ 445 (548)
+..|.+++..+.+.+
T Consensus 525 ~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 525 LHLAKRYYDQASEED 539 (552)
T ss_pred hHHHHHHHHHHHhcC
Confidence 788888888876544
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.92 E-value=8.9 Score=39.61 Aligned_cols=429 Identities=12% Similarity=0.082 Sum_probs=216.3
Q ss_pred hHHHHHHHHHHC-CCCCCH--HHHHHHHHHHH-ccCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCChHH
Q 008925 12 EAHYIFNCLIEE-GHRPTL--ITYTTLVAALT-RQKRFKSILSLISKVEKDGMKPDSI-----LFNAMINACSESGNVDE 82 (548)
Q Consensus 12 ~A~~~~~~~~~~-~~~~~~--~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~ 82 (548)
.|+..++.+.+. .++|.. .++..++..+. ...+++.|...+++.....-.++-. .-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 456677777642 233322 45666777776 6789999999999875442222221 2234456666666555
Q ss_pred HHHHHHHHHhcC----CCCCHHHHHHH-HHHHhccCChHHHHHHHHHhhhCCC--CCCCHHHHHHHHHHH--HhCCCHHH
Q 008925 83 AMKIFQKMKDSG----CKPTTSTYNTL-IKGYGNVGKPEESLKLLQLMSQDKN--VKPNDRTYNILVRAW--CSKNSIEE 153 (548)
Q Consensus 83 A~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~--~~~g~~~~ 153 (548)
|...+++.++.- ..+-...+..+ +..+...++...|.+.++.+..... ..|....+..++.+. ...+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 999988876531 11122233333 3333334799999999988876542 233344444444443 34566677
Q ss_pred HHHHHHHHHHCC---------CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHh-------CC----------CC---
Q 008925 154 AWNVVYKMVASG---------IQPDAVTYNTLARAY--AQYGETYRAEQMLFEMQN-------NQ----------VR--- 202 (548)
Q Consensus 154 a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~-------~~----------~~--- 202 (548)
+.+.++.+.... ..|...+|..+++.+ ...|+++.+.+.++++.+ .. ++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~ 277 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNI 277 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeec
Confidence 777777763321 123456666666554 456777777766665432 10 00
Q ss_pred ----------CCHHHH---------HHHH--HHHHhcCCHHHHHHHHHHHHhC--------CCCCC--H------HHHHH
Q 008925 203 ----------PNERTC---------GIIV--SGYCKEGNMEDAMRFLYRMKEL--------EVHPN--L------VVFNS 245 (548)
Q Consensus 203 ----------~~~~~~---------~~l~--~~~~~~g~~~~A~~~~~~~~~~--------~~~~~--~------~~~~~ 245 (548)
+....| .-++ -..+..+..++|.+++++..+. ...+. . ..|..
T Consensus 278 ~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~ 357 (608)
T PF10345_consen 278 GEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLR 357 (608)
T ss_pred ccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHH
Confidence 011111 1111 1233445554665555544221 11111 1 12222
Q ss_pred HHH---------HHHcCCChhhHHHHHHHHHHcCC-CCC-------HHHHHHHHHHHHhCCChhHHHHHHH--------H
Q 008925 246 LIK---------GFLDIKDSDGVDKALTLMEEFGV-KPD-------VVTFSTIMDAWSSAGLMGKCQEIFD--------D 300 (548)
Q Consensus 246 l~~---------~~~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~--------~ 300 (548)
.+. ..+-.+++..+...++.+.+... .|+ +..+...+-.+...|+.+.|...|. .
T Consensus 358 ~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~ 437 (608)
T PF10345_consen 358 YLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEA 437 (608)
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhh
Confidence 211 23456888889999988876421 111 2223333334457799999999998 3
Q ss_pred HHHcCCCCCHHHHHH--HHHHHHHcCC--HhH--HHHHHHHHHhC-CCCC--CHHHHHHH-HHHHhcc--CChHHHHHHH
Q 008925 301 MVKAGIEPDIHVFSI--LAKGYVRAGE--PQK--AESILTSMRKY-GVHP--NVVMFTTV-ISGWCNA--VKMQRAMSIY 368 (548)
Q Consensus 301 ~~~~~~~~~~~~~~~--l~~~~~~~g~--~~~--A~~~~~~~~~~-~~~p--~~~~~~~l-~~~~~~~--g~~~~A~~~~ 368 (548)
....+...+..++.. ++..+...+. ..+ +..+++.+... .-.| +..++..+ +.++... -...++...+
T Consensus 438 ~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l 517 (608)
T PF10345_consen 438 ANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHL 517 (608)
T ss_pred hccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHH
Confidence 444443333333322 2222222222 223 66677666542 1122 33344443 3333221 1223555555
Q ss_pred HHHHHcC---CCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCC--HHHHHH-----HHHHHHHcCCHHHH
Q 008925 369 EKMCEIG---INPNL---KTYETLLWGYGEAKQPWRAEELLQVMEE-KGVRPK--KSTIQL-----VADSWRAIGLAREA 434 (548)
Q Consensus 369 ~~~~~~~---~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~--~~~~~~-----l~~~~~~~g~~~~A 434 (548)
.+.++.- ...+. .+++.+...+. .|+..+.......... ..-.|| ...|.. +.+.+...|+.++|
T Consensus 518 ~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka 596 (608)
T PF10345_consen 518 QEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKA 596 (608)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 4443311 11121 12333333333 6777776555544332 111233 335533 33557788999999
Q ss_pred HHHHHHHH
Q 008925 435 KRVLKSAE 442 (548)
Q Consensus 435 ~~~~~~~~ 442 (548)
....++..
T Consensus 597 ~~~~~~~~ 604 (608)
T PF10345_consen 597 EEARQQLD 604 (608)
T ss_pred HHHHHHHH
Confidence 98887753
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.15 Score=29.25 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 417 TIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
++..++.+|.+.|++++|+.++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678888888999999999988854
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.91 E-value=11 Score=40.58 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=12.3
Q ss_pred HHHHHHHHhcC--CHHHHHHHHHHHH
Q 008925 174 NTLARAYAQYG--ETYRAEQMLFEMQ 197 (548)
Q Consensus 174 ~~l~~~~~~~g--~~~~a~~~~~~~~ 197 (548)
..++.+|.+.+ ..+.++.....+.
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 34555555555 4455555554444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.79 E-value=1.4 Score=36.83 Aligned_cols=96 Identities=10% Similarity=0.111 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH--H
Q 008925 137 TYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD--AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRP-NERTCGI--I 211 (548)
Q Consensus 137 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~--l 211 (548)
.+..++..|++.|+.+.|++.|.++.+....+. ...+..+++.....+++..+...+.++...-..+ |....+. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455666666667777777777766665533332 2344556666666677766666666554321111 1111111 1
Q ss_pred --HHHHHhcCCHHHHHHHHHHHH
Q 008925 212 --VSGYCKEGNMEDAMRFLYRMK 232 (548)
Q Consensus 212 --~~~~~~~g~~~~A~~~~~~~~ 232 (548)
+-.+...+++..|-+.|-+..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 112334567777777765553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.75 E-value=1.9 Score=36.06 Aligned_cols=97 Identities=12% Similarity=0.002 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHH--H
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPD--SILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT-TSTYN--T 104 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~--~ 104 (548)
..+..++..|.+.|+.+.|++.|.++......+. ...+-.++......+++..+...+.++...--... ....+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4567777778888888888888887776543333 33566677777777787777777776654311111 11111 1
Q ss_pred H--HHHHhccCChHHHHHHHHHhh
Q 008925 105 L--IKGYGNVGKPEESLKLLQLMS 126 (548)
Q Consensus 105 l--~~~~~~~g~~~~A~~~~~~~~ 126 (548)
. .-.+...+++.+|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1 112234566777766665554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.70 E-value=1 Score=40.28 Aligned_cols=80 Identities=10% Similarity=0.239 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh----CCCCCCCHHHHH
Q 008925 64 SILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQ----DKNVKPNDRTYN 139 (548)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~ 139 (548)
..++..++..+...|+++.+...++++.... +-+...|..++.+|...|+...|+..|+++.+ .-|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4466677777777777777777777777653 34666777777777777777777777776654 345667666666
Q ss_pred HHHHH
Q 008925 140 ILVRA 144 (548)
Q Consensus 140 ~l~~~ 144 (548)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 65555
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.17 Score=29.10 Aligned_cols=22 Identities=18% Similarity=0.030 Sum_probs=9.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 008925 384 ETLLWGYGEAKQPWRAEELLQV 405 (548)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~ 405 (548)
..|+..|.+.|++++|++++++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.4 Score=43.16 Aligned_cols=88 Identities=18% Similarity=0.047 Sum_probs=46.1
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.|.++|++++|++.|...+...+. +.+++..-..+|.+..+|..|..-.+..+..+ ..-...|..-+.+-...|...+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 466677777777777666654322 56666666666666666666665555544321 1112233333333333444455
Q ss_pred HHHHHHHHHh
Q 008925 83 AMKIFQKMKD 92 (548)
Q Consensus 83 A~~~~~~~~~ 92 (548)
|.+-++..+.
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 5555554444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.97 E-value=5.1 Score=33.97 Aligned_cols=64 Identities=17% Similarity=0.063 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhC
Q 008925 64 SILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQD 128 (548)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 128 (548)
+.+||.|.-.+...|+++.|.+.|+...+.... ...+...-.-.+.-.|+++-|.+-|.+.-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 445666666666666666666666666554211 1112222222233345666665555555443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.80 E-value=3.1 Score=34.75 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=54.1
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVHPN-----VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEA 393 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (548)
-+.+.|++++|..-|..++.. +++. ...|..-..++.+.+.++.|+.--.++++.+ +.....+..-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 355667777777777766664 2221 2234444556667777777777777777654 33334444445567777
Q ss_pred CChHHHHHHHHHHHHC
Q 008925 394 KQPWRAEELLQVMEEK 409 (548)
Q Consensus 394 g~~~~A~~~~~~~~~~ 409 (548)
..+++|++-|+++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 7777777777777663
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.69 E-value=2.2 Score=35.53 Aligned_cols=94 Identities=16% Similarity=0.028 Sum_probs=74.1
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 008925 353 SGWCNAVKMQRAMSIYEKMCEIGINPNL-----KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWR 426 (548)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~ 426 (548)
.-+...|++++|..-|..+++.- ++.. ..|..-..++.+.+.++.|+.-..+.++. .|+.. .+..-+.+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHH
Confidence 33567899999999999999873 4443 23555566788999999999999888885 46554 6666678899
Q ss_pred HcCCHHHHHHHHHHHHhccCCCC
Q 008925 427 AIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
+...+++|+.-++++.+.+|...
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchH
Confidence 99999999999999998887653
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.49 E-value=18 Score=39.07 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=41.2
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHH
Q 008925 245 SLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIH--VFSILAKGYVR 322 (548)
Q Consensus 245 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 322 (548)
+....+.....+++|.-.|+..-+. .-.+.+|..+|++.+|+.+..++.. ..+.. +-..|+..+..
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555443221 1234556666666666666655532 11111 12455556666
Q ss_pred cCCHhHHHHHHHHHHh
Q 008925 323 AGEPQKAESILTSMRK 338 (548)
Q Consensus 323 ~g~~~~A~~~~~~~~~ 338 (548)
.+++-+|-++..+...
T Consensus 1012 ~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLS 1027 (1265)
T ss_pred cccchhHHHHHHHHhc
Confidence 6666666666655543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.46 E-value=5.1 Score=32.66 Aligned_cols=123 Identities=12% Similarity=0.026 Sum_probs=55.8
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH-HHHHH--HHHHhccCCh
Q 008925 286 SSAGLMGKCQEIFDDMVKAGIEPDIH-VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVV-MFTTV--ISGWCNAVKM 361 (548)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~g~~ 361 (548)
.+.+..++|+.-|..+.+.|...-+. ............|+-..|...|+++-.....|-.. -...| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34455556666666665554333222 11222333445556666666666555432222211 11111 1223445555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 362 QRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
++...-.+.+...+-+.....-..|.-+-.+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555554444333222223334455555556666666666655554
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=92.33 E-value=1.8 Score=35.54 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
+++|...|+++.+. .|+...|+.-+.... +|-++..++.+.
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 44455555555543 466666665554442 244444444443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.27 E-value=5.2 Score=32.33 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=24.7
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhhh
Q 008925 75 SESGNVDEAMKIFQKMKDSGCKPTTS-TYNTLIKGYGNVGKPEESLKLLQLMSQ 127 (548)
Q Consensus 75 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 127 (548)
.+.++.+++..++..+... .|... .-..-...+...|++.+|+.+|+.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3455556666666555543 23221 112223334455666666666666544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.37 Score=27.02 Aligned_cols=27 Identities=26% Similarity=0.035 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 382 TYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
+|..++.+|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344445555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.94 E-value=11 Score=35.59 Aligned_cols=65 Identities=18% Similarity=0.097 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 008925 274 DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEP---DIHVFSILAKGYVRAGEPQKAESILTSMRK 338 (548)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (548)
...++..++..+.+.|.++.|...+..+...+... .+.+...-+..+...|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677778888888888888888888887643111 344455556667778888888888877776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.49 Score=26.47 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 417 TIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
++..++.++...|++++|.+.++++.+.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456667777777777777777777665443
|
... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.31 E-value=2.1 Score=35.18 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008925 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQ-----------PWRAEELLQVMEEKGVRPKKSTIQLVADSW 425 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 425 (548)
+++|+.-|++++..+ |....++..++.+|...+. +++|..+|+++.+ ..|+...|+.-+...
T Consensus 51 iedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 345555566666543 3334677777777755432 5566666666665 468888887655444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.12 E-value=21 Score=36.92 Aligned_cols=221 Identities=15% Similarity=0.147 Sum_probs=90.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh---C
Q 008925 213 SGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFG-VKPDVVTFSTIMDAWSS---A 288 (548)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---~ 288 (548)
..+.-.|+++.|++++-+. .....+.+.+...+..|.-.+-.+... ..+.... -.|.+..+..++..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 4445579999999988771 112233333333333322211111111 2222211 11122557778888865 4
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHhHHH-----------HHHHH---HHhCCCCCCHH----HHH
Q 008925 289 GLMGKCQEIFDDMVKAGIEPDIHVFS-ILAKGYVRAGEPQKAE-----------SILTS---MRKYGVHPNVV----MFT 349 (548)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~-----------~~~~~---~~~~~~~p~~~----~~~ 349 (548)
.+...|.+++--+....-+.....+. .+-+.....++++.-+ -++++ +.. +..+.. ...
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~--~~~~~~~~~~i~~ 418 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIK--FDDDEDFLREIIE 418 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT---SSSSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccC--CCCcHHHHHHHHH
Confidence 57778888887766543222222222 2222333333222111 11222 111 121112 223
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCC-----------hHHHHHHHHHHHHCC-----CC
Q 008925 350 TVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLL-WGYGEAKQ-----------PWRAEELLQVMEEKG-----VR 412 (548)
Q Consensus 350 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~-----------~~~A~~~~~~~~~~~-----~~ 412 (548)
....-+...|++++|+.+|.-+.+.. .-....+.++ .+...... ...|..+.+.....+ +.
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~ 496 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVS 496 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhcc
Confidence 33445667888888888888766431 0112233332 22322222 223444444332211 11
Q ss_pred CC-HHHHHHHHH-----HHHHcCCHHHHHHHHHHHH
Q 008925 413 PK-KSTIQLVAD-----SWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 413 p~-~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~ 442 (548)
+. ..++..|.+ -+...|++++|++.+++..
T Consensus 497 ~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 497 RKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 21 234444433 2467899999999998853
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.6 Score=26.05 Aligned_cols=27 Identities=19% Similarity=0.000 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 382 TYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
.+..+...+...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.59 E-value=10 Score=32.64 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=9.1
Q ss_pred HhcCCHHHHHHHHHHH
Q 008925 216 CKEGNMEDAMRFLYRM 231 (548)
Q Consensus 216 ~~~g~~~~A~~~~~~~ 231 (548)
...+.+++|.++|.+.
T Consensus 25 gg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERA 40 (288)
T ss_pred CCCcchHHHHHHHHHH
Confidence 3344666666666554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.55 E-value=6.6 Score=38.77 Aligned_cols=148 Identities=16% Similarity=0.160 Sum_probs=83.2
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008925 112 VGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQ 191 (548)
Q Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 191 (548)
.|+++.|..++..+. ....+.++..+.+.|..++|+++ .+|.... .....+.|+++.|.+
T Consensus 599 rrd~~~a~~vLp~I~--------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~ 658 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP--------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFD 658 (794)
T ss_pred hccccccccccccCc--------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHH
Confidence 455555555443332 12334555666666666666543 2232221 123345677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCC
Q 008925 192 MLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGV 271 (548)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 271 (548)
+..+.. +..-|..|..+....|++..|.++|.+..+ |..|+-.+...|+.+....+-....+.|
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g- 722 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG- 722 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-
Confidence 665543 556677777777777888777777776654 3455556666666665555555555554
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 008925 272 KPDVVTFSTIMDAWSSAGLMGKCQEIFDD 300 (548)
Q Consensus 272 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (548)
+.+.. ..+|...|+++++.+++..
T Consensus 723 ~~N~A-----F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 723 KNNLA-----FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ccchH-----HHHHHHcCCHHHHHHHHHh
Confidence 22222 2245556777777666544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.41 E-value=14 Score=33.69 Aligned_cols=236 Identities=13% Similarity=0.061 Sum_probs=113.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHHHH
Q 008925 168 PDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNM----EDAMRFLYRMKELEVHPNLVVF 243 (548)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~ 243 (548)
+|.......+..+...|..+ +...+..+... +|...-...+.++...|+. .++...+..+... .++..+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 45555555555555555432 33333333322 2445555555555566552 3455555555332 3455555
Q ss_pred HHHHHHHHcCCChhh--HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 244 NSLIKGFLDIKDSDG--VDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYV 321 (548)
Q Consensus 244 ~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (548)
...+.++...+.... ...+...+...-..++..+-...+.++...++ +.+...+-.+++ .++..+-...+.++.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg 184 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALN 184 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHh
Confidence 444544444332111 11112222111112344444455566666655 345555555554 234444444444444
Q ss_pred HcC-CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 322 RAG-EPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAE 400 (548)
Q Consensus 322 ~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (548)
..+ +...+...+..+.. .++..+-...+.++.+.|+ ..|+..+-+.++.+ + .....+.++...|.. +|+
T Consensus 185 ~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~ 254 (280)
T PRK09687 185 SNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLL 254 (280)
T ss_pred cCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHH
Confidence 432 13345555555553 3455556666666666666 45565555555532 2 233456666666664 566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH
Q 008925 401 ELLQVMEEKGVRPKKSTIQLVADSW 425 (548)
Q Consensus 401 ~~~~~~~~~~~~p~~~~~~~l~~~~ 425 (548)
..+..+.+. .||..+......+|
T Consensus 255 p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 255 PVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHhh--CCChhHHHHHHHHH
Confidence 666666653 34555444443333
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.32 E-value=17 Score=34.50 Aligned_cols=66 Identities=15% Similarity=0.034 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 308 PDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHP---NVVMFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
....++..++..+.+.|.++.|...+..+...+... ++.....-+...-..|+..+|+..++..++
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345578888899999999999999999888743111 233444445566677888999999888877
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.25 E-value=18 Score=34.82 Aligned_cols=121 Identities=11% Similarity=0.054 Sum_probs=75.1
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAE 190 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 190 (548)
..|++-.|-+-+....+.. +.++.............|+++.+.+.+....+. +.....+...+++.....|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 4566665554443333332 223333333344566778888888877665443 2345667777888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008925 191 QMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELE 235 (548)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 235 (548)
.+-..|+...+. ++.............|-++++.-.++++...+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888888776655 44444444444445677788888888876654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.66 Score=25.63 Aligned_cols=28 Identities=14% Similarity=0.078 Sum_probs=17.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 419 QLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 419 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
..++.++.+.|++++|.+.++++.+..|
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3455666666666666666666655444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.06 E-value=8.9 Score=31.02 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=27.1
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHc
Q 008925 321 VRAGEPQKAESILTSMRKYGVHPNVVMF-TTVISGWCNAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 374 (548)
...++.+.+..++..+.-. .|..... ..-...+...|++.+|+++|+.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3455666666666666553 3433322 12233345566666666666665543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.87 E-value=16 Score=33.56 Aligned_cols=97 Identities=15% Similarity=0.256 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCC----HhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCC-
Q 008925 291 MGKCQEIFDDMVKAGI---EPDIHVFSILAKGYVRAGE----PQKAESILTSMRKYGVHPNVV--MFTTVISGWCNAVK- 360 (548)
Q Consensus 291 ~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~- 360 (548)
...|..+|+.|.+... .++..++..|+.. ...+ .+.+..+++.+.+.|+..+.. ....++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3456666666665421 1222233333322 2222 234555666666655544332 22233322222111
Q ss_pred -hHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 361 -MQRAMSIYEKMCEIGINPNLKTYETLLWG 389 (548)
Q Consensus 361 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (548)
...+.++++.+.+.|+++....|..++-.
T Consensus 197 ~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 197 KVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 34566666666666666666665555433
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.015 Score=46.91 Aligned_cols=51 Identities=6% Similarity=0.219 Sum_probs=21.6
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008925 38 ALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQ 88 (548)
Q Consensus 38 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 88 (548)
.+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 333344444444444444443333334444444444444444444444433
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.34 E-value=11 Score=30.95 Aligned_cols=30 Identities=13% Similarity=0.329 Sum_probs=14.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 008925 52 ISKVEKDGMKPDSILFNAMINACSESGNVD 81 (548)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 81 (548)
++.+.+.+++|+...+..++..+.+.|++.
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 333344445555555555555555555443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.26 E-value=1.2 Score=40.23 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=65.5
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008925 317 AKGYVRAGEPQKAESILTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQ 395 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (548)
+.-|.++|.+++|++.+...... .| |.+++..-..+|.+...+..|..-.+.++..+ ..-...|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 56788888888888888887764 34 77778778888888888887777766666543 1111223322333333444
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008925 396 PWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVL 438 (548)
Q Consensus 396 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 438 (548)
..+|.+-++..++ +.|+..-+. ..+.+...+.|+.-+.
T Consensus 181 ~~EAKkD~E~vL~--LEP~~~ELk---K~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 181 NMEAKKDCETVLA--LEPKNIELK---KSLARINSLRERKIAT 218 (536)
T ss_pred HHHHHHhHHHHHh--hCcccHHHH---HHHHHhcchHhhhHHh
Confidence 4455555554444 456533322 2333333444544433
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.12 E-value=2.3 Score=38.08 Aligned_cols=104 Identities=17% Similarity=0.173 Sum_probs=65.7
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 008925 94 GCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKN--VKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAV 171 (548)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 171 (548)
|.+.+..+...++..-....+++.++..+-++..... ..|+. +-...++.+ -.-++++++.++..=++-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 3344455555555555556777788777777755311 11111 112233333 2345667888887777888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 172 TYNTLARAYAQYGETYRAEQMLFEMQNN 199 (548)
Q Consensus 172 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 199 (548)
+++.+++.+.+.+++.+|..+...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888877766544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.02 E-value=4.5 Score=34.03 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=59.9
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCC--CCCCCHHHHHHHHHHHHhCCC
Q 008925 73 ACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDK--NVKPNDRTYNILVRAWCSKNS 150 (548)
Q Consensus 73 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 150 (548)
.+.+.|+ +.|++.|-.+...+.--++.....|+..|. ..+.++++.++.+..... +-.+|+..+.+|+..+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3455555 678888888877765556666666666555 678899999988776532 226788999999999999999
Q ss_pred HHHHH
Q 008925 151 IEEAW 155 (548)
Q Consensus 151 ~~~a~ 155 (548)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 99885
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.91 E-value=32 Score=35.79 Aligned_cols=177 Identities=15% Similarity=0.210 Sum_probs=104.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 008925 33 TTLVAALTRQKRFKSILSLISKVEKDGMKPDS--ILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYG 110 (548)
Q Consensus 33 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (548)
..-+..+.+..-++-|+.+.+. .+.+++. .......+.+.+.|++++|...|-+.+.. +.|. .++.-|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFL 408 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhc
Confidence 3445666677778888776654 2223332 23444455666788999888877766543 2332 3455556
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAE 190 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 190 (548)
...+..+-..+++.+.+.+ -.+...-..|+.+|.+.++.++-.++.+... .|.- ..-....+..+.+.+-.++|.
T Consensus 409 daq~IknLt~YLe~L~~~g--la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKG--LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred CHHHHHHHHHHHHHHHHcc--cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 6666666667777776643 3344555678888999998888776665543 2211 111334556666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008925 191 QMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRM 231 (548)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 231 (548)
-+-..... +......++ -..+++++|++++..+
T Consensus 484 ~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 55544322 334444443 3457788888877665
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.88 E-value=24 Score=34.31 Aligned_cols=98 Identities=10% Similarity=0.050 Sum_probs=65.0
Q ss_pred CCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHH-CCCCCCHHH
Q 008925 342 HPNVVMF-TTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE--AKQPWRAEELLQVMEE-KGVRPKKST 417 (548)
Q Consensus 342 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~-~~~~p~~~~ 417 (548)
.|+..++ +.++..+-..|-.++|...+..+.... ||+...|..++..-.. +-+..-+.++++.|.. .| .++..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4566655 566777777888888888888888764 6666777777653221 2226667788888874 45 56667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 418 IQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 418 ~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
|......-...|..+-+-.++.++.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHH
Confidence 7666665567777776666665543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=88.87 E-value=31 Score=35.68 Aligned_cols=49 Identities=16% Similarity=-0.080 Sum_probs=31.5
Q ss_pred hccCChHHHHHHHHHHHHcCC-CCC-------HHHHHHHHHHHHhcCChHHHHHHHH
Q 008925 356 CNAVKMQRAMSIYEKMCEIGI-NPN-------LKTYETLLWGYGEAKQPWRAEELLQ 404 (548)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (548)
+-.+++..|...++.+.+..- .|+ +..+...+-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 357889899999998886321 111 2222233334456799999999997
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.84 E-value=0.48 Score=38.03 Aligned_cols=84 Identities=17% Similarity=0.083 Sum_probs=62.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008925 351 VISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGL 430 (548)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 430 (548)
++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++.. +.--...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 56677778888999999999997665566888899999999998878888887621 11223456778888899
Q ss_pred HHHHHHHHHHH
Q 008925 431 AREAKRVLKSA 441 (548)
Q Consensus 431 ~~~A~~~~~~~ 441 (548)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 99999888864
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.68 E-value=13 Score=31.10 Aligned_cols=89 Identities=16% Similarity=-0.044 Sum_probs=49.6
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHH-----HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 317 AKGYVRAGEPQKAESILTSMRKYGVHPNVVMF-----TTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYG 391 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (548)
...+...+++++|..-++..+.. |....+ ..|.......|.+++|+.+++...+.+. .......-++++.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 34556666777777766666542 222222 2344455566777777776666554321 1122333456666
Q ss_pred hcCChHHHHHHHHHHHHCC
Q 008925 392 EAKQPWRAEELLQVMEEKG 410 (548)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~ 410 (548)
..|+.++|..-|++.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777777777776653
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.30 E-value=22 Score=33.20 Aligned_cols=106 Identities=8% Similarity=0.060 Sum_probs=65.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccC------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 17 FNCLIEEGHRPTLITYTTLVAALTRQK------------RFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAM 84 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 84 (548)
|+..++.++. |+.+|..++..--..- -.+.-+.+++++++.+ +.+...+..++..+.+..+.++..
T Consensus 8 l~~~v~~~P~-di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 8 LNRRVRENPH-DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4445555443 7888888776433221 1345677778877763 456667777778888888888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhc---cCChHHHHHHHHHh
Q 008925 85 KIFQKMKDSGCKPTTSTYNTLIKGYGN---VGKPEESLKLLQLM 125 (548)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~ 125 (548)
+-++++.... +-+...|...+..... .-.++....+|.+.
T Consensus 86 ~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 86 KKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred HHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 8888887752 2356667666655443 12344454444443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.14 E-value=15 Score=31.06 Aligned_cols=72 Identities=14% Similarity=0.072 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008925 362 QRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE---KGVRPKKSTIQLVADSWRAIGLAREA 434 (548)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A 434 (548)
+.|.+.|-++...+.-.++.....|+..|. ..+.++++.++.+.++ .+-.+|++++..++..+.+.|++++|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444432333333333333333 3445555555555442 11134455555555555555555554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.07 E-value=12 Score=29.82 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=24.1
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhhh
Q 008925 76 ESGNVDEAMKIFQKMKDSGCKPTTS-TYNTLIKGYGNVGKPEESLKLLQLMSQ 127 (548)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 127 (548)
..++.+++..+++.|.-. .|+.. .-..-...+...|++++|+++|+.+..
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 355566666666655443 22221 111122334455666666666666544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.06 E-value=19 Score=35.75 Aligned_cols=130 Identities=14% Similarity=0.105 Sum_probs=75.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 008925 278 FSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN 357 (548)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 357 (548)
.+.++..+.+.|-.++|+++ .+|+.. -.....+.|+++.|.++..+.. +..-|..|..+...
T Consensus 617 rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 34455566666666666554 233221 1233456777777777665543 45567788888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008925 358 AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRV 437 (548)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 437 (548)
.|++..|.+.|.++.+. ..|+-++...|+.+.-..+-....+.| ..+. ..-++...|++++..++
T Consensus 679 ~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N~-----AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQG-KNNL-----AFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhhc-ccch-----HHHHHHHcCCHHHHHHH
Confidence 88888888877776653 345555666666554444444444433 1222 22345567777777777
Q ss_pred HHH
Q 008925 438 LKS 440 (548)
Q Consensus 438 ~~~ 440 (548)
+.+
T Consensus 744 Li~ 746 (794)
T KOG0276|consen 744 LIS 746 (794)
T ss_pred HHh
Confidence 665
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.97 E-value=8 Score=33.45 Aligned_cols=83 Identities=16% Similarity=0.032 Sum_probs=41.7
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChH
Q 008925 320 YVRAGEPQKAESILTSMRKYGVHPNVVMF-TTVISGWCNAVKMQRAMSIYEKMCEIGINPNL-KTYETLLWGYGEAKQPW 397 (548)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 397 (548)
|.....++.|+..+.+.+. +.|+..+| ..-+.++.+..+++.+..--.++++. .||. .....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 4444455556655555544 24554333 44444555555555555555555553 3333 23334444455555566
Q ss_pred HHHHHHHHH
Q 008925 398 RAEELLQVM 406 (548)
Q Consensus 398 ~A~~~~~~~ 406 (548)
+|+..+++.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 666666555
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.94 E-value=38 Score=35.55 Aligned_cols=89 Identities=11% Similarity=0.015 Sum_probs=50.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHH-HHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHH
Q 008925 181 AQYGETYRAEQMLFEMQNNQVRPNER-------TCGIIV-SGYCKEGNMEDAMRFLYRMKELE----VHPNLVVFNSLIK 248 (548)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~ 248 (548)
....++.+|..++.++...-..|+.. .++.+- ......|++++|.++.+.....- ..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44567777777777665432222211 122221 22334677777777766665431 1233455666666
Q ss_pred HHHcCCChhhHHHHHHHHHHc
Q 008925 249 GFLDIKDSDGVDKALTLMEEF 269 (548)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~ 269 (548)
+..-.|+++.|..+.....+.
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH
Confidence 777777787777777665554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.83 E-value=10 Score=34.28 Aligned_cols=99 Identities=18% Similarity=0.284 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHH
Q 008925 204 NERTCGIIVSGYCKEGNMEDAMRFLYRMKELE---VHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFST 280 (548)
Q Consensus 204 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (548)
...+...++..-....+++.++..+-++.... ..++ .+-...+..+. .-++.+++.++..=++.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 33334444444444556666666666554421 0011 11111222222 2244566666666566677777777777
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHc
Q 008925 281 IMDAWSSAGLMGKCQEIFDDMVKA 304 (548)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~ 304 (548)
+++.+.+.+++..|..+...++..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 777777777777777666666544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.77 E-value=1.3 Score=26.05 Aligned_cols=26 Identities=8% Similarity=0.235 Sum_probs=13.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMC 372 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 372 (548)
+++.+...|...|++++|..+++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44455555555555555555555544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.74 E-value=21 Score=32.44 Aligned_cols=220 Identities=13% Similarity=0.008 Sum_probs=140.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh----hhHHHHHHHHHHcCCCCCHHHH
Q 008925 203 PNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDS----DGVDKALTLMEEFGVKPDVVTF 278 (548)
Q Consensus 203 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 278 (548)
+|.......+..+...|..+ +...+..+.. .++...-...+.++...|+. .++...+..+... .++...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 46666666777777776533 3333444443 35666777777777777764 3466666655333 3555555
Q ss_pred HHHHHHHHhCCCh-----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008925 279 STIMDAWSSAGLM-----GKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVIS 353 (548)
Q Consensus 279 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 353 (548)
...+.++...+.. ..+...+..+.. .++..+-...+.++.+.++ +.|...+-.+.+. +|...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5556666554321 233344333332 4566777778888888876 4677777777763 45555566666
Q ss_pred HHhccC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008925 354 GWCNAV-KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAR 432 (548)
Q Consensus 354 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 432 (548)
++...+ +...+...+..++. .++..+-...+.++.+.|+ ..|+..+-...+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 666653 24577777887775 5688888888899999888 56777777776643 2 234577888888885
Q ss_pred HHHHHHHHHHhcc
Q 008925 433 EAKRVLKSAEEDR 445 (548)
Q Consensus 433 ~A~~~~~~~~~~~ 445 (548)
+|+..+.++.+.+
T Consensus 252 ~a~p~L~~l~~~~ 264 (280)
T PRK09687 252 TLLPVLDTLLYKF 264 (280)
T ss_pred hHHHHHHHHHhhC
Confidence 6888888877543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.63 E-value=14 Score=30.27 Aligned_cols=134 Identities=15% Similarity=0.135 Sum_probs=82.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 008925 14 HYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDS 93 (548)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (548)
.+..+.+.+.+.+|+...+..++..+.+.|++.....++. .++-+|.......+-.+. +....+.++--.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3455666677899999999999999999999877666554 445556554444432222 2334444444444432
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008925 94 GCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMV 162 (548)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 162 (548)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0114567778888999999999998875332 12222445555555665554444444433
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=87.42 E-value=11 Score=29.39 Aligned_cols=71 Identities=10% Similarity=0.139 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 377 NPNLKTYETLLWGYGEAKQ---PWRAEELLQVMEEKGVRPK--KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
.++..+-..+.+++.++.+ ..+.+.+++...+.. .|+ .+....++-.+.+.+++++++++++...+..|+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 5666777777788877654 445677777777522 232 3345556677888888888888888877665543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=87.39 E-value=39 Score=35.07 Aligned_cols=53 Identities=6% Similarity=-0.197 Sum_probs=37.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 387 LWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
+..+...|+...|...+..+.+. .+......++......|.++.|+.......
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~ 466 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGK 466 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhch
Confidence 34566778888888888887763 345566667777778888888877765543
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.35 E-value=11 Score=36.18 Aligned_cols=108 Identities=15% Similarity=0.092 Sum_probs=64.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC---CC--CC---CHHHHHHHHHHHHcCCChhhHHHHHHHHHH-------cCCCCC---
Q 008925 213 SGYCKEGNMEDAMRFLYRMKEL---EV--HP---NLVVFNSLIKGFLDIKDSDGVDKALTLMEE-------FGVKPD--- 274 (548)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~~~~~---~~--~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~--- 274 (548)
..+.-.|++.+|.+++...--. |. .| .-..||.+...+.+.+.+..+..+|....+ .|++|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 3445567777777766543211 11 11 112346666666666666666666655543 233332
Q ss_pred --------HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008925 275 --------VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR 322 (548)
Q Consensus 275 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (548)
..+|| ..-.|...|++-.|.+.|...++. +..++..|..|..+|..
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 12333 344677889999999999888876 36778888888888764
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.84 E-value=5.9 Score=28.65 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=17.3
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 008925 333 LTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMC 372 (548)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 372 (548)
++.+...++.|++....+.+.+|.+.+++.-|+++|+-..
T Consensus 30 mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 30 LNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444333
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=85.99 E-value=16 Score=31.62 Aligned_cols=90 Identities=19% Similarity=0.211 Sum_probs=52.0
Q ss_pred hccCChHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHhcCChH-------HHHHHHHHHHHCCCCC----C-HHH
Q 008925 356 CNAVKMQRAMSIYEKMCE----IGINPNL--KTYETLLWGYGEAKQPW-------RAEELLQVMEEKGVRP----K-KST 417 (548)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~----~~~~~~~--~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~p----~-~~~ 417 (548)
.....+++|++.|.-++- .+.+|.. ..+..+.+.|...|+.+ .|.+.|.+..+..-.| + ...
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 344455666665555442 1223332 33555667777777633 4555555555332221 1 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008925 418 IQLVADSWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 418 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
.-.++.+..+.|+.++|.++|.++....
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 5566788888999999999999887444
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.94 E-value=12 Score=27.54 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 008925 330 ESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMC 372 (548)
Q Consensus 330 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 372 (548)
.+-++.+...++.|++....+.+.+|.+.+++..|+++|+-+.
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444555555555555555555555555555444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.42 E-value=17 Score=28.98 Aligned_cols=53 Identities=9% Similarity=0.162 Sum_probs=34.4
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASG 165 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 165 (548)
..++++++..+++.+.--..-.+...++. ...+...|++.+|+++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence 46788888888887765321222233333 334667888888888888887754
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.30 E-value=38 Score=32.89 Aligned_cols=109 Identities=14% Similarity=0.042 Sum_probs=63.5
Q ss_pred HHHHcCCHhHHHHHHHHHHh---CCC--CCC---HHHHHHHHHHHhccCChHHHHHHHHHHHH-------cCCCCC----
Q 008925 319 GYVRAGEPQKAESILTSMRK---YGV--HPN---VVMFTTVISGWCNAVKMQRAMSIYEKMCE-------IGINPN---- 379 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~---~~~--~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~---- 379 (548)
.+...|++.+|.+++...-- .|. .|. -..||.|+-.+.+.|.+.-+..+|.++++ .|+.|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 44556777777766644321 111 111 12345666556666777777777776663 243332
Q ss_pred ------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008925 380 ------LKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAI 428 (548)
Q Consensus 380 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 428 (548)
........-.|.+.|++-.|.+.|.+.... +..++..|..++.+|...
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 112233455677888888888888887753 345677888888887643
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=84.94 E-value=1.6 Score=22.71 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 008925 419 QLVADSWRAIGLAREAKRVLK 439 (548)
Q Consensus 419 ~~l~~~~~~~g~~~~A~~~~~ 439 (548)
..++.++...|++++|+..++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345666666666666666654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.65 E-value=95 Score=36.92 Aligned_cols=61 Identities=16% Similarity=-0.052 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 380 LKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
..+|...++.....|.++.|...+-.+.+.+ -+..+...+..+...|+...|+.++++..+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4678889999999999999999887777654 234555678899999999999999999873
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=84.42 E-value=58 Score=34.31 Aligned_cols=229 Identities=15% Similarity=0.098 Sum_probs=127.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHH-HHHcCCChhhHHHHHHHHHHcC----CCCCHHHHHH
Q 008925 213 SGYCKEGNMEDAMRFLYRMKELEVHPNL-------VVFNSLIK-GFLDIKDSDGVDKALTLMEEFG----VKPDVVTFST 280 (548)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~ 280 (548)
.......++.+|..++.++...-..|+. ..|+.+-. .....|+++.+.++.+.....= ..+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 3445678999999998887654323222 23444322 2346788999999888776642 2334566777
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCC---HHHHHHHH--HHHHHcCCHh--HHHHHHHHHHhCC--CCC----CHHH
Q 008925 281 IMDAWSSAGLMGKCQEIFDDMVKAGIEPD---IHVFSILA--KGYVRAGEPQ--KAESILTSMRKYG--VHP----NVVM 347 (548)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~--~~~~~~g~~~--~A~~~~~~~~~~~--~~p----~~~~ 347 (548)
+..+..-.|++++|..+.+...+..-.-+ ...+..+. ..+...|+.. +....|....... -.| -..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 77888889999999998887765421222 22333332 3455667333 2233333332210 011 1234
Q ss_pred HHHHHHHHhcc-CChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHH
Q 008925 348 FTTVISGWCNA-VKMQRAMSIYEKMCEIGINPNLKT--YETLLWGYGEAKQPWRAEELLQVMEEKGVRP----KKSTIQL 420 (548)
Q Consensus 348 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~ 420 (548)
...+..++.+. +...++..-++--......|-... +..|+......|++++|...+.++......+ +......
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 44555555441 222222222222222221222222 2367888899999999999999987533222 2222222
Q ss_pred HH--HHHHHcCCHHHHHHHHHHH
Q 008925 421 VA--DSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 421 l~--~~~~~~g~~~~A~~~~~~~ 441 (548)
.+ ..+...|+..+|.....+.
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHhc
Confidence 32 3456789999988888773
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.27 E-value=14 Score=27.11 Aligned_cols=47 Identities=17% Similarity=0.359 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 008925 47 SILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDS 93 (548)
Q Consensus 47 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (548)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+-++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555555555566677777777777777777777777777776554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=83.46 E-value=3.8 Score=22.68 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHh
Q 008925 313 FSILAKGYVRAGEPQKAESILTSMRK 338 (548)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (548)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444445555555555555554443
|
... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.09 E-value=33 Score=30.39 Aligned_cols=207 Identities=13% Similarity=0.121 Sum_probs=121.1
Q ss_pred CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC-
Q 008925 165 GIQPDAVTYNTLARA-YAQYGETYRAEQMLFEMQNNQVRPNE---RTCGIIVSGYCKEGNMEDAMRFLYRMKEL---EV- 236 (548)
Q Consensus 165 ~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~- 236 (548)
+-.||+..-|..-.+ -.+..++++|+.-|.++++....... .++..++....+.|++++....+.+++.- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345665543322111 12344788999999988876433233 34455678888999999999988887531 11
Q ss_pred -CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC----C
Q 008925 237 -HPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEF-----GVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG----I 306 (548)
Q Consensus 237 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~ 306 (548)
.-+..+.++++.......+.+-....++.-... +-+.--.|-..+...|...+.+.....+++++...- .
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 123456666766666555555555555432221 111111234456777777788888888887776531 1
Q ss_pred CCC-------HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----hccCChHHHHHHHHHHH
Q 008925 307 EPD-------IHVFSILAKGYVRAGEPQKAESILTSMRKY-GVHPNVVMFTTVISGW-----CNAVKMQRAMSIYEKMC 372 (548)
Q Consensus 307 ~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~ 372 (548)
..| ...|..-+++|...++-.+-..++++.+.. ..-|.+... .+++-| .+.|++++|..-|-++-
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHH
Confidence 222 245666778888888888888888877642 123444333 334333 46788888765544444
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.63 E-value=1.9 Score=23.62 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=9.8
Q ss_pred HHHHHHcCCHhHHHHHHHHHHh
Q 008925 317 AKGYVRAGEPQKAESILTSMRK 338 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~ 338 (548)
+.++.+.|++++|...|+++++
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3344444444444444444443
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=81.94 E-value=5.7 Score=27.48 Aligned_cols=47 Identities=13% Similarity=0.015 Sum_probs=26.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 008925 392 EAKQPWRAEELLQVMEEKGVRPK--KSTIQLVADSWRAIGLAREAKRVL 438 (548)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 438 (548)
...+.++|+..|+..++.-..|. ..++..+..+++..|++++++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566667777766665322222 124555566666667766666554
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.92 E-value=10 Score=37.38 Aligned_cols=118 Identities=10% Similarity=0.028 Sum_probs=70.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 008925 26 RPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTL 105 (548)
Q Consensus 26 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 105 (548)
.|--..+|..+--+...|+...|...+..+........-+....|.....+.|-...|..++.+.+... ...+-++-.+
T Consensus 604 ~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~ 682 (886)
T KOG4507|consen 604 APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSL 682 (886)
T ss_pred CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhc
Confidence 344444555555555677777777777766543222223344556666666666777777777666543 3344566667
Q ss_pred HHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 008925 106 IKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWC 146 (548)
Q Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (548)
.+++....+++.|++.|++..+.. +.+...-+.|...-|
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~--~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLT--TKCPECENSLKLIRC 721 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcC--CCChhhHHHHHHHHH
Confidence 777777777788887777776542 334455555554444
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.65 E-value=40 Score=30.38 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008925 174 NTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRM 231 (548)
Q Consensus 174 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 231 (548)
+...+.|...|.+.+|.++.+..+..++ .+...+..++..+...||--.+.+-++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445566677777777777776665533 25566666677777777766666555554
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.62 E-value=12 Score=31.86 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 008925 279 STIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYG--VHPNVVMFTTVIS 353 (548)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~ 353 (548)
+..++.+.+.+.+.+++...+.-++.+ |.|...-..+++.|+-.|++++|..-++-.-... ..+....|..++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 344556667778888888888877775 5566677778888888888888877776655432 1222345555554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.39 E-value=18 Score=26.28 Aligned_cols=45 Identities=9% Similarity=0.189 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 008925 258 GVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMV 302 (548)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (548)
++.+.++.+......|++....+.+++|.+.+++..|.++++...
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555555555666666666777777777777777777776655
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=81.28 E-value=3.5 Score=21.82 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 418 IQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 418 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
+..++.++...|++++|...++.+.+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44455556666666666666665543
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.07 E-value=37 Score=29.62 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=42.6
Q ss_pred cccCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHH
Q 008925 5 VGKGKPHEAHYIFNCLIEEGHRPTL-ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSI-LFNAMINACSESGNVDE 82 (548)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 82 (548)
....++..|+..|.+++..+ |+. .-|..-+.++.+..+++.+..--...++. .|+.+ ....+.........++.
T Consensus 21 f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccH
Confidence 34445666666666665543 333 33444455555566666655555555442 33433 33334444555556666
Q ss_pred HHHHHHHH
Q 008925 83 AMKIFQKM 90 (548)
Q Consensus 83 A~~~~~~~ 90 (548)
|+..+.+.
T Consensus 97 aI~~Lqra 104 (284)
T KOG4642|consen 97 AIKVLQRA 104 (284)
T ss_pred HHHHHHHH
Confidence 66666655
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 548 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 4e-07 | ||
| 4g23_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 9e-04 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
| >pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 91.4 bits (225), Expect = 2e-19
Identities = 24/223 (10%), Positives = 65/223 (29%), Gaps = 3/223 (1%)
Query: 50 SLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGY 109
L + P ++ ++D + + K
Sbjct: 78 CLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCC 137
Query: 110 GNVGKPEESLKLLQLMSQ--DKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQ 167
+ + LL + K YN ++ W + + +E V++ + +G+
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197
Query: 168 PDAVTYNTLARAYAQYGETYRA-EQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMR 226
PD ++Y + + + E+ L +M ++ +++S + ++ +
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
Query: 227 FLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEF 269
P V + L++ K ++
Sbjct: 258 VKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 90.6 bits (223), Expect = 4e-19
Identities = 24/233 (10%), Positives = 66/233 (28%), Gaps = 5/233 (2%)
Query: 11 HEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAM 70
A + +C + P L+ + + + + + A
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 71 INACSESGNVDEAMKIFQKMKD---SGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQ 127
C + + A + T YN ++ G+ G +E + +L ++ +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV-K 192
Query: 128 DKNVKPNDRTYNILVRAWCSKNSIEEA-WNVVYKMVASGIQPDAVTYNTLARAYAQYGET 186
D + P+ +Y ++ ++ + +M G++ A+ L +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 187 YRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPN 239
++ P ++ + + +K L+
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 86.0 bits (211), Expect = 1e-17
Identities = 21/184 (11%), Positives = 56/184 (30%)
Query: 22 EEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVD 81
G + L+ + + +L + + ++NA++ + G
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182
Query: 82 EAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNIL 141
E + + +KD+G P +Y ++ G + +++ + +K +L
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL 242
Query: 142 VRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQV 201
+ ++ V P V + L R ++ ++ Q
Sbjct: 243 LSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQC 302
Query: 202 RPNE 205
+
Sbjct: 303 LFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 79.1 bits (193), Expect = 2e-15
Identities = 24/188 (12%), Positives = 58/188 (30%), Gaps = 4/188 (2%)
Query: 266 MEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGE 325
+ P + ++ + Q +A + K + +
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 326 PQKAESILTSMR---KYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKT 382
A +L + + M+ V+ GW + + + + + G+ P+L +
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 383 YETLLWGYGEAKQPWRA-EELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSA 441
Y L G Q E L+ M ++G++ + ++ + + +V +
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
Query: 442 EEDRQSMP 449
Q P
Sbjct: 263 SLPPQLPP 270
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.9 bits (190), Expect = 3e-15
Identities = 43/372 (11%), Positives = 105/372 (28%), Gaps = 16/372 (4%)
Query: 114 KPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTY 173
+ + LQ+ Q K R + R + A + + P
Sbjct: 40 RMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQ----MAGCLEDCTRQAPESPWEEQL 95
Query: 174 NTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKE 233
L + + + Q+ ++ + A L
Sbjct: 96 ARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHG 155
Query: 234 LEVH---PNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGL 290
L ++N+++ G+ + L ++++ G+ PD+++++ +
Sbjct: 156 QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215
Query: 291 MGKC-QEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFT 349
+ + M + G++ ++L RA + + + P V +
Sbjct: 216 DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS 275
Query: 350 TVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409
++ +S + + L + + + L E K
Sbjct: 276 KLLRDVYA---KDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVK 332
Query: 410 GVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPN-----KKDEIAVESIHRKQ 464
R T++ + L R+ + E R S+ + E+ + Q
Sbjct: 333 HARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQ 392
Query: 465 NLSASNSTFLQI 476
L A +F +
Sbjct: 393 ALPAQGESFTTL 404
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.5 bits (137), Expect = 9e-09
Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 4/145 (2%)
Query: 1 MNILVGKGKPHEAHYIFNCL---IEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEK 57
+ + AH++ ++ TL Y ++ RQ FK ++ ++ V+
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 58 DGMKPDSILFNAMINACSESGNVDEAM-KIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPE 116
G+ PD + + A + + + ++M G K L+ +
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 117 ESLKLLQLMSQDKNVKPNDRTYNIL 141
K+ S + P T +L
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLL 278
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 4e-07
Identities = 60/438 (13%), Positives = 132/438 (30%), Gaps = 137/438 (31%)
Query: 76 ESGNVD----EAMKIFQK--MKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDK 129
E+G + + +F+ + + CK ++ K ++S +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDV-----------------QDMPK--SILS-KE 49
Query: 130 NVK-----PND--RTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQ 182
+ + T + W + E +V K V ++ + Y L
Sbjct: 50 EIDHIIMSKDAVSGTLRLF---WTLLSKQE---EMVQKFVEEVLRIN---YKFLMSPIK- 99
Query: 183 YGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMK---------- 232
R M+ M Q +R N A + R++
Sbjct: 100 --TEQRQPSMMTRMYIEQR---DRLYN---------DNQVFAKYNVSRLQPYLKLRQALL 145
Query: 233 ELEVHPNLVVFNSLIKGF------LDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWS 286
EL N+++ + G LD+ S V + +F + F W
Sbjct: 146 ELRPAKNVLIDG--VLGSGKTWVALDVCLSYKVQCKM----DFKI------F------WL 187
Query: 287 SAGLMGKCQEIFDDMVK-----AGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKY-- 339
+ + C + I+P+ ++ + + SI +R+
Sbjct: 188 N---LKNCNSPETVLEMLQKLLYQIDPN---WTSRSDHSSN--IKLRIHSIQAELRRLLK 239
Query: 340 -GVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEI-----------GINPNLKTYETL- 386
+ N ++ V+ NA K A ++ C+I ++ T+ +L
Sbjct: 240 SKPYENCLL---VLLNVQNA-KAWNAFNL---SCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 387 --LWGYGEAKQPWRAEELL-QVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKS-AE 442
+ + LL + + RP+ +++ + R + + E+ R + +
Sbjct: 293 HHSMTLTPDE----VKSLLLKYL---DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 443 EDRQSMPNKKDEIAVESI 460
+ +K I S+
Sbjct: 346 NWKHVNCDKLTTIIESSL 363
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 6e-06
Identities = 81/569 (14%), Positives = 161/569 (28%), Gaps = 196/569 (34%)
Query: 8 GKPHEAHY--IFNCLIEEGHRPTLIT--YTTLVAALTRQ---------KRFKSILSLISK 54
+ +Y + + + E +P+++T Y L R + L L
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 55 VEK---------DGM----KPDSILFNAMINACSESGNVDEAM--KIFQKMKDSGCKPTT 99
+ + DG+ K + + ++ C V M KIF
Sbjct: 144 LLELRPAKNVLIDGVLGSGK--TWV---ALDVCLSYK-VQCKMDFKIF------------ 185
Query: 100 STYNTLIKGYGNVGKPEESLKLLQ-LMSQ-DKNVKPN-DRTYNI-------------LVR 143
+ L N PE L++LQ L+ Q D N D + NI L++
Sbjct: 186 --WLNL----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 144 AWCSKNSI--------EEAWNVV-----------YKMVASGIQPDAVTYNTLARAYAQYG 184
+ +N + +AWN +K V + T+ +L
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 185 ETYRAEQMLFEMQNNQVR--PNERTCGI------IVSGYCKEGNMEDAMRFLYRMKELEV 236
+ +L + + + + P E I++ ++G +
Sbjct: 300 PDE-VKSLLLKYLDCRPQDLPRE-VLTTNPRRLSIIAESIRDGLA--------TWDNWK- 348
Query: 237 HPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKP-DV-VTFSTIMDAWSSAGLMGKC 294
H N ++I+ L++ + K + + V P + + W +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRK---MFDRLSVFPPSAHIPTILLSLIW-FDVIKSDV 404
Query: 295 QEIFDDMVKAG-IE----------PDIHVFSILAKGYVRAGEPQKAESILTS---MRKY- 339
+ + + K +E P I+ + K E SI+ + +
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIY-LELKVK---LENEYALHRSIVDHYNIPKTFD 460
Query: 340 -----------------GVH-------PNVVMFTTVI--------------SGWCNAVKM 361
G H + +F V + W + +
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 362 QRAMS---IYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVR-PKKST 417
+ Y+ I N YE L+ + L +EE +
Sbjct: 521 LNTLQQLKFYKPY----ICDNDPKYERLVNAI---------LDFLPKIEENLICSKYTDL 567
Query: 418 IQLVADSWRAIGLAREAKRVLKSAEEDRQ 446
++ I L E + + + A +Q
Sbjct: 568 LR--------IALMAEDEAIFEEAH--KQ 586
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 7e-06
Identities = 28/263 (10%), Positives = 78/263 (29%), Gaps = 28/263 (10%)
Query: 41 RQKRFKSILSLISKVEKDGMKPDSIL----FNAMINACSESGNVDEAMKIFQK-----MK 91
R + + L+ +++K + +L + A+K F+K +
Sbjct: 76 RIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIF 135
Query: 92 DSGCKPTTSTYNTLIKGYGNVGKPEESLKL----LQLMSQDKNVKPND-RTYNILVRAWC 146
+ + + Y + + S+ ++ + + + +++ +
Sbjct: 136 VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195
Query: 147 SKNSIEEAWNVVYK----MVASGIQPD-AVTYNTLARAYAQYGETYRAEQMLFE----MQ 197
E+A + K A T + + A +
Sbjct: 196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255
Query: 198 NNQVRPNE-RTCGIIVSGYCKEGNMEDAMRF----LYRMKELEVHPNLVVFNSLIKGFLD 252
+ + P+ + +I + K G ++ A + + ++ L F L +L
Sbjct: 256 ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS 315
Query: 253 IKDSDGVDKALTLMEEFGVKPDV 275
D + + +E + D+
Sbjct: 316 GPDEEAIQGFFDFLESKMLYADL 338
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 29/267 (10%), Positives = 78/267 (29%), Gaps = 31/267 (11%)
Query: 38 ALTRQKRFKSILSLISKVEKDGMKPDSIL------FNAMINACSESGNVDEAMKIFQK-- 89
++ L+ +E K +L F M + EA+ +++
Sbjct: 71 PGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMY--EFDQKEYVEAIGYYREAE 128
Query: 90 ---MKDSGCKPTTSTYNTLIKGYGNVGKPEESLKL----LQLMSQDKNVKPND-RTYNIL 141
S + + + Y ++ + S+ L + ++ ++
Sbjct: 129 KELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188
Query: 142 VRAWCSKNSIEEAWNVVYK----MVASGIQPD-AVTYNTLARAYAQYGETYRAEQMLFE- 195
+ ++A + + A++ +A +Y + G+ A + +
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248
Query: 196 ---MQNNQVRPNERTCGIIVSGYCKEGNMEDAMRF----LYRMKELEVHPNLVVFNSLIK 248
+ + + CK G + A +F L + +F L
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQA 308
Query: 249 GFLDIKDSDGVDKALTLMEEFGVKPDV 275
+ + D + L+ E+ + +
Sbjct: 309 VYKETVDERKIHDLLSYFEKKNLHAYI 335
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 23/159 (14%), Positives = 49/159 (30%), Gaps = 16/159 (10%)
Query: 32 YTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMK 91
Y + + + + +S + + S L + + + I K+
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332
Query: 92 DSGCKPT-TSTYNTLIKGYGNVGKPEESLKLL-QLMSQDKNVKPNDRTYNILVRAWCSKN 149
+ P Y + G+ + + L+ + T+ + + N
Sbjct: 333 EI--DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE---KAVTWLAVGIYYLCVN 387
Query: 150 SIEEAWNVVY--KMVASGIQPD-AVTYNTLARAYAQYGE 185
I EA Y K +S + P + A ++A GE
Sbjct: 388 KISEA--RRYFSK--SSTMDPQFGPAWIGFAHSFAIEGE 422
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 6e-04
Identities = 25/177 (14%), Positives = 55/177 (31%), Gaps = 13/177 (7%)
Query: 12 EAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSI-LFNAM 70
E +Y N L T L A + + + ++ + P+++ A
Sbjct: 39 EMYYWTNVDKNSEISSKL--ATELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEAC 94
Query: 71 INACSESGNVDEAMKIFQKMKDSGCKPT-TSTYNTLIKGYGNVGKPEESLKLLQLMSQDK 129
G +A+++++K+ + + L Y + E+ K L+ +
Sbjct: 95 AEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEK--KKLETDYKKL 150
Query: 130 NVKPND-RTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGE 185
+ + E+A N + K++ P TL + E
Sbjct: 151 SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDKILRIEKE 205
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 6e-04
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 17/158 (10%)
Query: 2 NILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMK 61
+I P A + +L V L + R + K++
Sbjct: 109 SIYFYDQNPDAALRTLH------QGDSLECMAMTVQILLKLDRLDLARKELKKMQD--QD 160
Query: 62 PDSILFN---AMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEES 118
D+ L A ++ + + +A IFQ+M D C PT N + G+ E +
Sbjct: 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAA 219
Query: 119 LKLLQLMSQDKNVKPNDRT--YNILVRAWCSKNSIEEA 154
+LQ + + N++V + E
Sbjct: 220 EGVLQ---EALDKDSGHPETLINLVVLSQHLGKPPEVT 254
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 548 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.92 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.91 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.91 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.88 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.86 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.77 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.75 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.75 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.74 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.74 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.73 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.72 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.71 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.71 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.71 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.7 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.69 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.68 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.68 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.67 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.66 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.66 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.65 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.64 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.63 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.63 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.62 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.61 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.61 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.6 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.59 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.58 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.57 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.56 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.56 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.56 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.55 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.5 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.5 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.49 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.48 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.46 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.45 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.45 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.44 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.43 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.42 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.35 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.33 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.27 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.27 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.26 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.26 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.26 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.25 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.23 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.23 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.22 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.22 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.22 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.2 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.19 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.19 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.18 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.17 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.16 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.15 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.15 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.15 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.14 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.12 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.11 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.1 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.08 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.06 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.06 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.05 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.03 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.0 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.0 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.99 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.96 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.95 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.93 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.93 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.92 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.9 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.88 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.88 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.88 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.88 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.88 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.87 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.86 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.86 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.82 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.82 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.81 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.81 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.81 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.81 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.8 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.8 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.79 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.78 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.78 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.78 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.77 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.76 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.75 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.75 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.75 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.71 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.7 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.69 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.68 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.68 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.67 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.67 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.67 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.66 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.65 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.64 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.63 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.63 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.62 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.62 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.6 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.55 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.54 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.53 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.49 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.48 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.48 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.48 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.47 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.47 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.45 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.42 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.42 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.41 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.38 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.38 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.35 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.34 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.34 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.34 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.33 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.32 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.32 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.31 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.29 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.29 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.28 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.28 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.27 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.24 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.22 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.21 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.19 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.16 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.0 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.0 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.99 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.99 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.94 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.93 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.92 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.86 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.81 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.72 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.71 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.7 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.46 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.43 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.39 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.35 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.27 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.14 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.02 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.02 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.81 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.81 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.69 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.67 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.64 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.59 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.49 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.37 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.16 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.11 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.1 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.03 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.83 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.79 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.38 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.36 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.28 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.1 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.61 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.07 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.03 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.95 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.64 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.34 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.63 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.34 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.97 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.73 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.73 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.16 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.93 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 90.59 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.32 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 87.82 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 87.8 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.62 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.51 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.67 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.92 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 82.58 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.58 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.19 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 80.87 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 80.6 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 80.31 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.07 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=346.36 Aligned_cols=456 Identities=10% Similarity=-0.017 Sum_probs=388.2
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 008925 8 GKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIF 87 (548)
Q Consensus 8 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 87 (548)
|.+..+...+..+ +.++...|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|+.+|
T Consensus 67 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 67 GSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 4444444444432 3467889999999999999999999999999864 578889999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCC--------------CCCCCHHHHHHHHHHHHhCCCHHH
Q 008925 88 QKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDK--------------NVKPNDRTYNILVRAWCSKNSIEE 153 (548)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~ 153 (548)
+++... +++..+++.++.+|.+.|++++|+++|+++.... +.+++..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 998654 6789999999999999999999999998643321 223458899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH--------------------------------------HHHHHhcCCHHHHHHHHHH
Q 008925 154 AWNVVYKMVASGIQPDAVTYNTL--------------------------------------ARAYAQYGETYRAEQMLFE 195 (548)
Q Consensus 154 a~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~~~~g~~~~a~~~~~~ 195 (548)
|+++|+++.+.+ +.+...+..+ +..|.+.|++++|.++|++
T Consensus 219 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 219 AKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 999999999864 2334443333 4455678899999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCH
Q 008925 196 MQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDV 275 (548)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 275 (548)
+.+. +++..++..++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+.
T Consensus 298 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 298 INGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp STTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred hhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 8765 4789999999999999999999999999998765 5578899999999999999999999999998765 4578
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008925 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGW 355 (548)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 355 (548)
.++..++.+|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 899999999999999999999999999875 6678899999999999999999999999999864 44788999999999
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcC
Q 008925 356 CNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK----GVRPK--KSTIQLVADSWRAIG 429 (548)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g 429 (548)
.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+. +..|+ ..++..++.+|.+.|
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 99999999999999999875 678999999999999999999999999999865 66787 679999999999999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhccccccccccccccccccccCCCChhhhhhhhhhccc
Q 008925 430 LAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEHNGSSAAKIRSQIVLRS 500 (548)
Q Consensus 430 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~ 500 (548)
++++|+++++++.+.. |.+...|..++.+|...|+|++|.+..+++...+
T Consensus 531 ~~~~A~~~~~~~~~~~---------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLS---------------------TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CHHHHHHHHHHHHHHS---------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC---------------------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999976433 4456678889999999999999999999987766
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=340.75 Aligned_cols=430 Identities=9% Similarity=-0.007 Sum_probs=378.6
Q ss_pred ccccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 008925 2 NILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVD 81 (548)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 81 (548)
..+.+.|++++|+.+|++++.. .|+..++..++.++.+.|++++|+.+|+++... +++..+++.++.+|.+.|+++
T Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 167 (597)
T 2xpi_A 92 HDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQ 167 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHH
Confidence 3567899999999999999864 467789999999999999999999999998653 778999999999999999999
Q ss_pred HHHHHHHHHHhc---------------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHH-----
Q 008925 82 EAMKIFQKMKDS---------------GCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNIL----- 141 (548)
Q Consensus 82 ~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l----- 141 (548)
+|+++|+++... +.+++..+|+.++.+|.+.|++++|+++|+++.+.. +.+...+..+
T Consensus 168 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~ 245 (597)
T 2xpi_A 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHL 245 (597)
T ss_dssp HHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTC
T ss_pred HHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhc
Confidence 999999954321 223357899999999999999999999999998753 2334443333
Q ss_pred ---------------------------------HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008925 142 ---------------------------------VRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYR 188 (548)
Q Consensus 142 ---------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 188 (548)
+..|.+.|++++|.++|+++.+. +++..+++.++..|.+.|++++
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHH
Confidence 44556778999999999998875 5899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 008925 189 AEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEE 268 (548)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 268 (548)
|.++|+++.+.++. +..++..++.++.+.|++++|..+++++.... +.+..++..++..|.+.|++++|.++|+.+.+
T Consensus 324 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 324 VLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999987644 78889999999999999999999999998754 66789999999999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 008925 269 FGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMF 348 (548)
Q Consensus 269 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 348 (548)
.. +.+..+++.++.++.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|
T Consensus 402 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 478 (597)
T 2xpi_A 402 MD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLL 478 (597)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 65 3468899999999999999999999999999876 6788999999999999999999999999998864 3478899
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEI----GINPN--LKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVA 422 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 422 (548)
+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..++..++
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 557 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 99999999999999999999999986 55777 7899999999999999999999999999764 34678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcc
Q 008925 423 DSWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
.+|.+.|++++|.++++++.+.+
T Consensus 558 ~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999987554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-30 Score=250.57 Aligned_cols=381 Identities=10% Similarity=0.050 Sum_probs=278.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCh
Q 008925 36 VAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKP 115 (548)
Q Consensus 36 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 115 (548)
+..+.+.|++++|++.++++.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..++.++...|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 445566677777777777766652 4445556666666677777777777777666553 44566677777777777777
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008925 116 EESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFE 195 (548)
Q Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 195 (548)
++|+..|+++.... |.+...|..++.++...|++++|.+.|+++++.. +.+...+..+...+...|++++|.+.|++
T Consensus 84 ~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 77777777766542 3345567777777777777777777777776653 33455566677777777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCH
Q 008925 196 MQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDV 275 (548)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 275 (548)
+.+..+. +..++..++..+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+..+ .+.
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~ 237 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 237 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCH
Confidence 7665332 56777777777888888888888888877754 44567777888888888888888888888777643 356
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008925 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGW 355 (548)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 355 (548)
.++..+..++...|++++|...++++++.+ +.+..++..++.++.+.|++++|...|+++.+.. +.+..++..++..+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 778888888888888888888888888775 5567788888888888888888888888888753 45677888888888
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 008925 356 CNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIG 429 (548)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 429 (548)
...|++++|+..|+++++.. |.+..++..++.+|.+.|++++|...++++.+. .|+ ...+..++.++...|
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 88888888888888888764 556778888888888888888888888888864 454 447777777766655
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=251.85 Aligned_cols=381 Identities=13% Similarity=0.048 Sum_probs=337.0
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.+.+.|++++|+..|+.+.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 356889999999999999987543 67788888999999999999999999998874 6688899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMV 162 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 162 (548)
|+..|+++.+.. +.+..+|..++.++...|++++|++.|+++.... |.+...+..+...+...|++++|.+.|+++.
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999998863 4456789999999999999999999999998752 4456778889999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008925 163 ASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVV 242 (548)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 242 (548)
+.. +.+..+|..++..+...|++++|...|+++.+..+. +...+..+...+...|++++|+..|+++.... +.+..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 874 456889999999999999999999999999887544 67889999999999999999999999998864 556889
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008925 243 FNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR 322 (548)
Q Consensus 243 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (548)
+..++..+...|++++|...++.+.+..+ .++.++..++.++...|++++|...++++++.. +.+..++..++..+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 99999999999999999999999998753 367889999999999999999999999999885 7788999999999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008925 323 AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQ 395 (548)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (548)
.|++++|...++++.+.. +.+..++..++..+.+.|++++|...|+++++.. |.+...|..+...+...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 999999999999999863 3457789999999999999999999999999864 5567888888888776653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=239.98 Aligned_cols=212 Identities=17% Similarity=0.249 Sum_probs=130.1
Q ss_pred HHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 008925 190 EQMLFEMQNNQVRPNE-RTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEE 268 (548)
Q Consensus 190 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 268 (548)
..+.+.+.+.+..+.+ ..++.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|...+....+
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------- 80 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------- 80 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---------
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh---------
Confidence 3344444444433322 234555555555555555555555555555555555555555555544332110
Q ss_pred cCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 008925 269 FGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMF 348 (548)
Q Consensus 269 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 348 (548)
...+.++.|.++|++|...|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 81 -----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 143 (501)
T 4g26_A 81 -----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143 (501)
T ss_dssp -----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred -----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence 011235667777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRA 427 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 427 (548)
+.+|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|++.|+.++|.+++++|.+.++.|+..|+..+...+..
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777766666654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=237.81 Aligned_cols=206 Identities=15% Similarity=0.179 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------H
Q 008925 152 EEAWNVVYKMVASGIQPDA-VTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGN---------M 221 (548)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 221 (548)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777665544 46888999999999999999999999999999999999999999987664 5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 008925 222 EDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDM 301 (548)
Q Consensus 222 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (548)
++|.++|++|...|+.||..+|++++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 66677777776666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 008925 302 VKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN 357 (548)
Q Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 357 (548)
.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.+..|+..||+.++..|+.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-26 Score=229.82 Aligned_cols=405 Identities=9% Similarity=0.001 Sum_probs=279.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 008925 31 TYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYG 110 (548)
Q Consensus 31 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (548)
.+...+..+.+.|++++|+..|+++.+.. |+..++..+..++.+.|++++|+..|+++.+.+ +.+..++..++.++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 44455555555555555555555555542 455555555555555555555555555555542 233445555555555
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH--------------------------------
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVV-------------------------------- 158 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-------------------------------- 158 (548)
..|++++|+..|+++.... +++......++..+........+.+.+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 5555555555555554432 222222222222222211111111111
Q ss_pred ---HHHHHCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHH
Q 008925 159 ---YKMVASGI---------QPDAVTYNTLARAYAQ---YGETYRAEQMLFEMQN-----NQV--------RPNERTCGI 210 (548)
Q Consensus 159 ---~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ 210 (548)
..+..... +.+...+..+...+.. .|++++|...++++.+ ... +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 00000000 1124445555555554 8899999999998887 311 123556778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 008925 211 IVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGL 290 (548)
Q Consensus 211 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 290 (548)
++..+...|++++|...|+++.+.. |+...+..++..+...|++++|...++.+.+..+ .+...+..+..++...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCC
Confidence 8888999999999999999998865 3388888899999999999999999999888753 356788889999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 008925 291 MGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEK 370 (548)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 370 (548)
+++|...++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|...|++
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999875 5567788899999999999999999999988753 33567888899999999999999999999
Q ss_pred HHHcCCCCC------HHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 371 MCEIGINPN------LKTYETLLWGYGE---AKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 371 ~~~~~~~~~------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
+.+.. +.+ ...+..++.++.. .|++++|...++++.+.. +.+..++..++.++...|++++|...++++
T Consensus 398 a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 398 AIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 98753 222 3488889999999 999999999999998753 334568888999999999999999999998
Q ss_pred HhccCC
Q 008925 442 EEDRQS 447 (548)
Q Consensus 442 ~~~~~~ 447 (548)
.+..|.
T Consensus 476 ~~~~~~ 481 (514)
T 2gw1_A 476 ADLART 481 (514)
T ss_dssp HHHCSS
T ss_pred HHhccc
Confidence 877654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-26 Score=229.28 Aligned_cols=402 Identities=10% Similarity=0.013 Sum_probs=323.7
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.+.+.|++++|+..|+++++.+ |+..+|..++.++.+.|++++|+..++++.+.+ +.+..++..++.++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHH
Confidence 4678999999999999999975 689999999999999999999999999999875 5577899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHh----------------------------------hhC
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLM----------------------------------SQD 128 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------------------------~~~ 128 (548)
|...|+++...+ +++......++..+........+.+.+..+ ...
T Consensus 92 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 92 AMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 999999999875 334333333333333222111111111000 000
Q ss_pred CCC---------CCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHhc
Q 008925 129 KNV---------KPNDRTYNILVRAWCS---KNSIEEAWNVVYKMVA-----SGI--------QPDAVTYNTLARAYAQY 183 (548)
Q Consensus 129 ~~~---------~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~ 183 (548)
... +.+...+......+.. .|++++|+..|+++.+ ..- +.+..++..++..+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence 000 1124455555555554 8999999999999988 311 22356788899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHH
Q 008925 184 GETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKAL 263 (548)
Q Consensus 184 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 263 (548)
|++++|...++++.+..+. ..++..++.++...|++++|...++++.... +.+..++..+...+...|++++|...+
T Consensus 251 ~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp SCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999887544 8888999999999999999999999998865 556788999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-
Q 008925 264 TLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVH- 342 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 342 (548)
+.+.+..+. +...+..+...+...|++++|...++.+.+.. +.+..++..++..+...|++++|...++++.+....
T Consensus 328 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 328 DKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 999987543 56788889999999999999999999999875 567788999999999999999999999998764211
Q ss_pred CC----HHHHHHHHHHHhc---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008925 343 PN----VVMFTTVISGWCN---AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK 415 (548)
Q Consensus 343 p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 415 (548)
++ ...+..++..+.. .|++++|...|+++.+.. +.+..++..++.+|...|++++|...|+++.+. .|+.
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 11 3388999999999 999999999999999875 667889999999999999999999999999985 4665
Q ss_pred H
Q 008925 416 S 416 (548)
Q Consensus 416 ~ 416 (548)
.
T Consensus 483 ~ 483 (514)
T 2gw1_A 483 E 483 (514)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-24 Score=213.15 Aligned_cols=367 Identities=13% Similarity=0.086 Sum_probs=257.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 008925 47 SILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMS 126 (548)
Q Consensus 47 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 126 (548)
.+...+..+.... +.+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..++.++...|++++|+..|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444432 4456677777777778888888888888777652 4466777777777777888888888877776
Q ss_pred hCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008925 127 QDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDA---VTYNTLARAYAQYGETYRAEQMLFEMQNNQVRP 203 (548)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 203 (548)
+.. +.+...+..++.++...|++++|...|+++.+.. +.+. ..+..++..+..
T Consensus 88 ~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~--------------------- 143 (450)
T 2y4t_A 88 QLK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM--------------------- 143 (450)
T ss_dssp HHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH---------------------
T ss_pred hcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH---------------------
Confidence 642 4456677777777777777777777777777653 2223 445545443211
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 204 NERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMD 283 (548)
Q Consensus 204 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (548)
..+..+...+...|++++|+..|+++.+.. +.+..++..++..|...|++++|...++.+.+.. +.+..++..++.
T Consensus 144 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 219 (450)
T 2y4t_A 144 --QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIST 219 (450)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 112234455677888888888888887754 5567788888888888888888888888887764 346778888888
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHHcCCHhHHHHHHHHHHhCCCCCC-----HH
Q 008925 284 AWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSIL------------AKGYVRAGEPQKAESILTSMRKYGVHPN-----VV 346 (548)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~ 346 (548)
++...|++++|...++++.+.. +.+...+..+ +..+...|++++|...|+++.+. .|+ ..
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~ 296 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVR 296 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHH
Confidence 8888888888888888888764 4455555554 78889999999999999999874 344 34
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADS- 424 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~- 424 (548)
.+..++..+.+.|++++|+..++++++.. +.+..+|..++.+|...|++++|...++++.+. .|+ ...+..++.+
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHH
Confidence 67888899999999999999999998874 567889999999999999999999999999874 455 4466666633
Q ss_pred -----------HHHcC-----CHHHHHHHHHH-HHhccCCCC
Q 008925 425 -----------WRAIG-----LAREAKRVLKS-AEEDRQSMP 449 (548)
Q Consensus 425 -----------~~~~g-----~~~~A~~~~~~-~~~~~~~~~ 449 (548)
+...| ..+++.+.+++ +.+..|...
T Consensus 374 ~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred HHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 33334 55667777775 445544433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-24 Score=213.12 Aligned_cols=318 Identities=11% Similarity=0.032 Sum_probs=206.8
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008925 11 HEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKM 90 (548)
Q Consensus 11 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 90 (548)
..+...+..+....+ .+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|+..|+++
T Consensus 9 ~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQSM-ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------C-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345556666666543 367889999999999999999999999998863 567889999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCH---HHHHHH------------HHHHHhCCCHHHHH
Q 008925 91 KDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPND---RTYNIL------------VRAWCSKNSIEEAW 155 (548)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~a~ 155 (548)
.+.+ +.+..++..++.+|...|++++|+..|+++.... +.+. ..+..+ +..+...|++++|+
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9874 4568899999999999999999999999998752 3333 555555 34477778888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008925 156 NVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELE 235 (548)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 235 (548)
..|+++.+.. +.+..++..++.+|...|++++|.+.|+++.+... .+..++..++.+|...|++++|+..|+++....
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888877654 44667777777888888888888888877766533 356777777777777888888888887777643
Q ss_pred CCCCHHHHHHH------------HHHHHcCCChhhHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhCCChhHHHHHHH
Q 008925 236 VHPNLVVFNSL------------IKGFLDIKDSDGVDKALTLMEEFGVKPD----VVTFSTIMDAWSSAGLMGKCQEIFD 299 (548)
Q Consensus 236 ~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 299 (548)
+.+...+..+ +..+...|++++|...++.+.+..+. + ...+..+..++.+.|++++|...++
T Consensus 242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2333333333 44444445555555555444443211 1 1234444444444444444444444
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 008925 300 DMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRK 338 (548)
Q Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (548)
.+++.. +.+..++..++.+|...|++++|...++++.+
T Consensus 320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 444432 33344444444444444444444444444444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-24 Score=219.69 Aligned_cols=405 Identities=11% Similarity=0.060 Sum_probs=294.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGY 109 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (548)
..+..++..+.+.|++++|+..|+++.+.. +.+...+..+..+|.+.|++++|++.|+++.+.. +.+..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 456667777777777777777777777653 4466677777777777777777777777776653 34566677777777
Q ss_pred hccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC------CCCCHH------------
Q 008925 110 GNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASG------IQPDAV------------ 171 (548)
Q Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~------------ 171 (548)
...|++++|+..|+.+.. .|+.. ...+..+...+...+|...++++.... ..|+..
T Consensus 104 ~~~g~~~~A~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSL----NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHcCCHHHHHHHHHHHhc----CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 777777777777753322 12211 112223334444455666666654320 011111
Q ss_pred ------------------HHHHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhc
Q 008925 172 ------------------TYNTLARAYA--------QYGETYRAEQMLFEMQNNQVRPNE-------RTCGIIVSGYCKE 218 (548)
Q Consensus 172 ------------------~~~~l~~~~~--------~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 218 (548)
....+...+. ..|++++|..+++++.+..+. +. .++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhc
Confidence 1222222221 235789999999999876443 32 3566777888999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 008925 219 GNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIF 298 (548)
Q Consensus 219 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (548)
|++++|...|+++.... |+...+..+...+...|++++|...++.+.+..+ .+..++..+...+...|++++|...+
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999998864 5588899999999999999999999999988763 36788999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC---
Q 008925 299 DDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIG--- 375 (548)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 375 (548)
+++++.. +.+..++..++.++...|++++|...++++.+.. +.+...+..++..+...|++++|...|+++.+..
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 9999875 5667889999999999999999999999998864 3456788999999999999999999999998742
Q ss_pred --CCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 376 --INPNLKTYETLLWGYGEA----------KQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 376 --~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
.......+..+..++... |++++|+..++++.+.. +.+...+..++.++...|++++|.+.++++.+
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111223355566778887 99999999999998753 33466899999999999999999999999998
Q ss_pred ccCCCC
Q 008925 444 DRQSMP 449 (548)
Q Consensus 444 ~~~~~~ 449 (548)
..|..+
T Consensus 491 ~~~~~~ 496 (537)
T 3fp2_A 491 LARTMD 496 (537)
T ss_dssp HC--CH
T ss_pred hCCCcH
Confidence 877654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-24 Score=216.12 Aligned_cols=393 Identities=12% Similarity=0.103 Sum_probs=310.0
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.+.+.|++++|+..|+.+++..+. +..++..++.++.+.|++++|++.|+++.+.+ +.+...+..+..++...|++++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 467899999999999999998644 78999999999999999999999999999875 5678899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCC-----CCCCCHH---------------------
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDK-----NVKPNDR--------------------- 136 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~--------------------- 136 (548)
|+..|+.+ .. .|+. ....+..+...+...+|...++.+.... ...|+..
T Consensus 112 A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 112 AMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 99999743 32 2222 2223344455556677888888775421 0112211
Q ss_pred ---------HHHHHHHHHH--------hCCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHH
Q 008925 137 ---------TYNILVRAWC--------SKNSIEEAWNVVYKMVASGIQPD-------AVTYNTLARAYAQYGETYRAEQM 192 (548)
Q Consensus 137 ---------~~~~l~~~~~--------~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~ 192 (548)
....+...+. ..|++++|+.+++++.+.. +.+ ..++..+...+...|++++|...
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 265 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVL 265 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 1122222221 1247899999999998864 223 23577778889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCC
Q 008925 193 LFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVK 272 (548)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 272 (548)
++.+.+.. |+..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+..+.
T Consensus 266 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 342 (537)
T 3fp2_A 266 LQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342 (537)
T ss_dssp HHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence 99998864 457888999999999999999999999998865 567889999999999999999999999999987633
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-----CCCHHH
Q 008925 273 PDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGV-----HPNVVM 347 (548)
Q Consensus 273 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~ 347 (548)
+...+..+..++...|++++|...++++.+.. +.+..++..++..+...|++++|...++++.+... ......
T Consensus 343 -~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 420 (537)
T 3fp2_A 343 -NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420 (537)
T ss_dssp -CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHH
Confidence 56788899999999999999999999999885 66788999999999999999999999999876421 112223
Q ss_pred HHHHHHHHhcc----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 348 FTTVISGWCNA----------VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 348 ~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
+..+...+... |++++|+..|+++.+.. +.+..++..++.+|...|++++|...|+++.+.
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45556677777 99999999999999875 667899999999999999999999999999985
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-20 Score=182.75 Aligned_cols=364 Identities=13% Similarity=0.035 Sum_probs=285.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 008925 13 AHYIFNCLIEEGHRPTLITYTTLVAALTR----QKRFKSILSLISKVEKDGMKPDSILFNAMINACSE----SGNVDEAM 84 (548)
Q Consensus 13 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 84 (548)
++..+....+. .+..++..+...+.. .+++++|...|++..+.| ++..+..|...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 45556655554 367778888888877 788899999998888764 56677788888887 88899999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----CCCHHHHHH
Q 008925 85 KIFQKMKDSGCKPTTSTYNTLIKGYGN----VGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCS----KNSIEEAWN 156 (548)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~ 156 (548)
+.|++..+.| ++..+..|...|.. .+++++|+..|++.... .+...+..+...|.. .++.++|++
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999888764 66777778888877 77889999998888764 366777888888877 778889999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 008925 157 VVYKMVASGIQPDAVTYNTLARAYAQ----YGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCK----EGNMEDAMRFL 228 (548)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 228 (548)
+|++..+.| +...+..|...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|..+|
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 998888864 67778888888887 788889999888887764 56677778877776 78888999988
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-----CChhHHHHHHH
Q 008925 229 YRMKELEVHPNLVVFNSLIKGFLD----IKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSA-----GLMGKCQEIFD 299 (548)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~ 299 (548)
++..+.+ +...+..+...|.. .+++++|...++...+.+ ++..+..+...+... +++++|...++
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 8888753 55667777777776 788888888888887754 455667777777776 78888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcC---CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHH
Q 008925 300 DMVKAGIEPDIHVFSILAKGYVRAG---EPQKAESILTSMRKYGVHPNVVMFTTVISGWCN----AVKMQRAMSIYEKMC 372 (548)
Q Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 372 (548)
+..+.+ +...+..+...|...| ++++|+..|++..+.+ +...+..+...|.. .+++++|...|+++.
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 888764 4567777888777766 7788888888888753 56777888888877 788888988888888
Q ss_pred HcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 008925 373 EIGINPNLKTYETLLWGYGE----AKQPWRAEELLQVMEEKG 410 (548)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 410 (548)
+.+ +...+..|...|.. .+++++|..+|++..+.+
T Consensus 395 ~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 395 EQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred hCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 864 56777888888887 788888888888888765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-21 Score=182.21 Aligned_cols=339 Identities=13% Similarity=0.062 Sum_probs=170.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIK 107 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 107 (548)
++..+..++..+...|++++|+..|+++.+.. +.+..++..+...+...|++++|+..|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566677777777777777777777776653 4456677777777777777777777777776653 335566677777
Q ss_pred HHhccCChHHHHHHHHHhhhCCCCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008925 108 GYGNVGKPEESLKLLQLMSQDKNVKP----NDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQY 183 (548)
Q Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (548)
++...|++++|+..|+++... .| +...+..+..... ...+..++..+...
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHc
Confidence 777777777777777776653 23 2233333211100 00112223344444
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHH
Q 008925 184 GETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKAL 263 (548)
Q Consensus 184 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 263 (548)
|++++|.+.++++.+..+. +..++..+..++...|++++|...++++.... +.+..++..+...+...|++++|...+
T Consensus 134 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4555555544444443221 34444444444444555555555554444432 233344444444444444444444444
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 008925 264 TLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHP 343 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 343 (548)
+...+..+. +...+..+.. +. .......++..+...|++++|...++++.+.. |
T Consensus 212 ~~a~~~~~~-~~~~~~~~~~-----------------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~ 265 (359)
T 3ieg_A 212 RECLKLDQD-HKRCFAHYKQ-----------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--P 265 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHH-----------------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHhhCcc-chHHHHHHHH-----------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C
Confidence 444433211 1111111000 00 00111122444555555555555555555432 2
Q ss_pred C-H----HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHH
Q 008925 344 N-V----VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KST 417 (548)
Q Consensus 344 ~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~ 417 (548)
+ . ..+..++..+...|++++|+..++++.+.. +.+..++..++.++...|++++|...|+++.+. .|+ ...
T Consensus 266 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~ 342 (359)
T 3ieg_A 266 SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQI 342 (359)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHH
T ss_pred CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHH
Confidence 2 1 123344555555666666666666665543 345555666666666666666666666666553 233 334
Q ss_pred HHHHHHHH
Q 008925 418 IQLVADSW 425 (548)
Q Consensus 418 ~~~l~~~~ 425 (548)
+..+..+.
T Consensus 343 ~~~l~~~~ 350 (359)
T 3ieg_A 343 REGLEKAQ 350 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.9e-21 Score=180.49 Aligned_cols=331 Identities=15% Similarity=0.106 Sum_probs=209.3
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.+...|++++|+..|+.+++..+. +..++..++.++...|++++|+..++++.+.. +.+...+..+...+...|++++
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDE 89 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHH
Confidence 467899999999999999997544 78899999999999999999999999999874 5577899999999999999999
Q ss_pred HHHHHHHHHhcCCCC----CHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 008925 83 AMKIFQKMKDSGCKP----TTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVV 158 (548)
Q Consensus 83 A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 158 (548)
|...|+++.+. .| +...+..+...+. ...+..++..+...|++++|+..+
T Consensus 90 A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~~~~A~~~~ 143 (359)
T 3ieg_A 90 AEDDFKKVLKS--NPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGADYTAAITFL 143 (359)
T ss_dssp HHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhc--CCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999999886 34 3344444422111 112334455666777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008925 159 YKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHP 238 (548)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 238 (548)
+++.+.. +.+...+..++.++...|++++|...++.+.+..+. +..++..++..+...|++++|...|+++.+.. +.
T Consensus 144 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~ 220 (359)
T 3ieg_A 144 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QD 220 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cc
Confidence 7776653 445666777777777777777777777777665432 56677777777777777777777777776643 22
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----HHH
Q 008925 239 NLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIH----VFS 314 (548)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~ 314 (548)
+...+..+... . .......+...+...|++++|...++++.+.. +.+.. .+.
T Consensus 221 ~~~~~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 276 (359)
T 3ieg_A 221 HKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKE 276 (359)
T ss_dssp CHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHH
T ss_pred chHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHH
Confidence 22222211110 0 01112223344455555555555555555442 22221 233
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 315 ILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390 (548)
Q Consensus 315 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (548)
.+..++...|++++|...++++.+.. +.+..++..++..+...|++++|...|+++++.. |.+...+..+..+.
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 44555555555666655555555532 2244455555555555566666666666655543 33344444444443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-19 Score=175.89 Aligned_cols=365 Identities=13% Similarity=0.065 Sum_probs=313.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc----cCChHHH
Q 008925 47 SILSLISKVEKDGMKPDSILFNAMINACSE----SGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGN----VGKPEES 118 (548)
Q Consensus 47 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 118 (548)
.+...++...+.| ++..+..+...|.. .+++++|...|++..+.| ++..+..|...|.. .+++++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3455666665543 77888888888888 899999999999998864 67788889999988 8999999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 008925 119 LKLLQLMSQDKNVKPNDRTYNILVRAWCS----KNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQ----YGETYRAE 190 (548)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 190 (548)
+..|++.... .+...+..+...|.. .+++++|+.+|++..+.| +...+..|...|.. .+++++|.
T Consensus 99 ~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 99 VIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 9999999764 367888889999988 889999999999999875 67788889999987 88999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhhHHHH
Q 008925 191 QMLFEMQNNQVRPNERTCGIIVSGYCK----EGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLD----IKDSDGVDKA 262 (548)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 262 (548)
+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|...
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998864 67888999999988 899999999999999854 66788888888876 7899999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CCHhHHHHHH
Q 008925 263 LTLMEEFGVKPDVVTFSTIMDAWSS----AGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRA-----GEPQKAESIL 333 (548)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~ 333 (548)
++...+.+ +...+..+...+.. .++.++|...|+++.+.+ +...+..|...|... +++++|+..+
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 99988864 55677778888887 899999999999998764 567888889999887 8999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHH
Q 008925 334 TSMRKYGVHPNVVMFTTVISGWCNAV---KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE----AKQPWRAEELLQVM 406 (548)
Q Consensus 334 ~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 406 (548)
++..+.+ +...+..+...|...| +.++|+++|+++.+.+ +...+..|...|.. .+++++|..+|++.
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999864 5667888888887756 8999999999999964 78889999999998 89999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcc
Q 008925 407 EEKGVRPKKSTIQLVADSWRA----IGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 407 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 445 (548)
.+.+ +...+..++.++.. .+++++|..+++++.+.+
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 9864 57788889999988 899999999999987655
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-19 Score=181.47 Aligned_cols=421 Identities=10% Similarity=0.035 Sum_probs=311.3
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 008925 17 FNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCK 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 96 (548)
|+..++..+. +..+|..++.. .+.|++++|..+|+++.+. .|.+...|..++..+.+.|++++|..+|++++.. .
T Consensus 2 le~al~~~P~-~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhCCC-CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 5666666544 78899999984 7889999999999999987 4667889999999999999999999999999986 4
Q ss_pred CCHHHHHHHHHHH-hccCChHHHHH----HHHHhhhCCCCC-CCHHHHHHHHHHHHh---------CCCHHHHHHHHHHH
Q 008925 97 PTTSTYNTLIKGY-GNVGKPEESLK----LLQLMSQDKNVK-PNDRTYNILVRAWCS---------KNSIEEAWNVVYKM 161 (548)
Q Consensus 97 ~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~~~~~-~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~ 161 (548)
|+...|..++... ...|+.++|.+ +|++.....|.. ++...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6888888777533 34577776655 777765543333 456778887776655 68899999999999
Q ss_pred HHCCCCCCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHH------HhCC---CCCC--------HHHHHHH
Q 008925 162 VASGIQPDAVTYNTLARAY-------------AQYGETYRAEQMLFEM------QNNQ---VRPN--------ERTCGII 211 (548)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~a~~~~~~~------~~~~---~~~~--------~~~~~~l 211 (548)
++.........|....... ...+++..|..+++.+ .+.. ++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8831111123443332211 1234567777777652 2221 2333 2344444
Q ss_pred HHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-------CCChh-------hHHHHHHHHHHc
Q 008925 212 VSGYCKE----GNM----EDAMRFLYRMKELEVHPNLVVFNSLIKGFLD-------IKDSD-------GVDKALTLMEEF 269 (548)
Q Consensus 212 ~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 269 (548)
+...... ++. ..+..+|++++... +.++..|..++..+.. .|+++ +|..+++...+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 4332221 232 47788999988753 5678889988888875 78887 899999999863
Q ss_pred CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 008925 270 GVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDI-HVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMF 348 (548)
Q Consensus 270 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 348 (548)
-.+.+...+..++..+.+.|++++|..+|+++++.. +.+. .+|..++..+.+.|++++|..+|+++.+.. +.+...+
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 223467889999999999999999999999999873 3343 589999999999999999999999999853 2233333
Q ss_pred HHHHHH-HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHH
Q 008925 349 TTVISG-WCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKG-VRPK--KSTIQLVADS 424 (548)
Q Consensus 349 ~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~ 424 (548)
...+.. +...|+.++|..+|+++++.. |.+...|..++..+.+.|+.++|..+|++++..+ ..|+ ...|..++..
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 332222 346899999999999999874 5678999999999999999999999999999763 2332 3478888888
Q ss_pred HHHcCCHHHHHHHHHHHHhccC
Q 008925 425 WRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 425 ~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
....|+.+.+.++.+++.+..|
T Consensus 473 e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHcCCHHHHHHHHHHHHHHCc
Confidence 8899999999999999886655
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-20 Score=174.56 Aligned_cols=292 Identities=11% Similarity=0.018 Sum_probs=197.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008925 132 KPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGII 211 (548)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 211 (548)
+.+...+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+..+. +...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 3444555666666666677777777777766653 334455555666666777777777777776665332 55666666
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 008925 212 VSGYCKEG-NMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGL 290 (548)
Q Consensus 212 ~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 290 (548)
...+...| ++++|...|+++.... +.+...|..+...+...|++++|...++.+.+..+. +...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 77777777 7777777777776653 344566777777777777777777777777665432 34555567777777788
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHhccCChH
Q 008925 291 MGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYG--------VHPNVVMFTTVISGWCNAVKMQ 362 (548)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~ 362 (548)
+++|...++++.+.. +.+..++..++..+...|++++|...++++.+.. .+.+..++..++..+...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888777664 5566777777788888888888888887776531 1223457777788888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HHcCCH
Q 008925 363 RAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP-KKSTIQLVADSW-RAIGLA 431 (548)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~ 431 (548)
+|...|+++.+.. +.+...+..++.++...|++++|...++++.+. .| +...+..++.++ ...|+.
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCch
Confidence 8888888887764 556677778888888888888888888877663 34 344666666666 344543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-20 Score=173.66 Aligned_cols=263 Identities=10% Similarity=-0.012 Sum_probs=106.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhC
Q 008925 69 AMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSK 148 (548)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (548)
.+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.... +.+...+..+...+...
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHh
Confidence 33333333444444444444443321 1122233333333344444444444444433321 22233334444444444
Q ss_pred C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008925 149 N-SIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRF 227 (548)
Q Consensus 149 g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 227 (548)
| ++++|...|+++.+.. +.+...+..++..+...|++++|...++++.+.... +...+..+...+...|++++|...
T Consensus 104 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp CSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4 4444444444444332 222333444444444444444444444444333211 223333344444444444444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 008925 228 LYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFG--------VKPDVVTFSTIMDAWSSAGLMGKCQEIFD 299 (548)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 299 (548)
++++.+.. +.+..++..++..+...|++++|...++.+.+.. .+....++..+..++...|++++|...++
T Consensus 182 ~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 182 FSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 44444332 2223333334444444444444444443333221 01122344444445555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 008925 300 DMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRK 338 (548)
Q Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (548)
++++.. +.+..++..++.++...|++++|...++++.+
T Consensus 261 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 261 QALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 554443 33344444445555555555555555554444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.8e-20 Score=180.37 Aligned_cols=361 Identities=14% Similarity=0.024 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-
Q 008925 135 DRTYNILVRAWCSKNSIEEAWNVVYKMVAS--------GIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNN-----Q- 200 (548)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~- 200 (548)
...|+.++..+...|+.++|++.|++.++. ..+....+|+.+..+|...|++++|...++++.+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445666666666666666666666665431 11223456666777777777777777766665431 0
Q ss_pred -CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHcCCChhhHHHHHHHHHHcCCCCC
Q 008925 201 -VRPNERTCGIIVSGYCK--EGNMEDAMRFLYRMKELEVHPNLVVFNSLIKG---FLDIKDSDGVDKALTLMEEFGVKPD 274 (548)
Q Consensus 201 -~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 274 (548)
......++..+..++.. .+++++|+..|+++++.. |.++..+..+... +...++.++|++.+++..+..+ .+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cc
Confidence 01123445555444443 345777777777776653 3344444444443 2344666677777777666542 24
Q ss_pred HHHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 008925 275 VVTFSTIMDAWSS----AGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTT 350 (548)
Q Consensus 275 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 350 (548)
...+..+...+.. .+++++|..+++++.... +.+..++..++..|...|++++|...++++.+.. +.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 4555555444433 346667777777777664 5566677777777777777777777777777642 223445555
Q ss_pred HHHHHhc-------------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008925 351 VISGWCN-------------------AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGV 411 (548)
Q Consensus 351 l~~~~~~-------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 411 (548)
++.+|.. .+..++|...|+++.+.. +.+..++..++..|...|++++|+..|++.++...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 5554432 234677888888888865 55667788899999999999999999999988543
Q ss_pred CCCHH--HHHHHHHH-HHHcCCHHHHHHHHHHHHhccCCCCCc-chhHHHHHHHh--hccccccccccccccccccccCC
Q 008925 412 RPKKS--TIQLVADS-WRAIGLAREAKRVLKSAEEDRQSMPNK-KDEIAVESIHR--KQNLSASNSTFLQIPGVVSSEHN 485 (548)
Q Consensus 412 ~p~~~--~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~l~~--~~~~~~~~~~~~~l~~~y~~~~~ 485 (548)
.|... .+..++.. ....|++++|+..++++.+..|..... ........+.. +..+|.++..+..||.+|...|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~ 445 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK 445 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 33221 23344433 356789999999999999887765321 11111222222 34567788889999999999999
Q ss_pred CChhhhhhhhhhccc
Q 008925 486 GSSAAKIRSQIVLRS 500 (548)
Q Consensus 486 ~~~a~~~~~~~~~~~ 500 (548)
+++|.+.+++.++.+
T Consensus 446 ~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 446 MQQADEDSERGLESG 460 (472)
T ss_dssp CC-------------
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998766
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-20 Score=177.07 Aligned_cols=308 Identities=11% Similarity=0.029 Sum_probs=206.2
Q ss_pred hccCChHHHHH-HHHHhhhCCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008925 110 GNVGKPEESLK-LLQLMSQDKNVKP--NDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGET 186 (548)
Q Consensus 110 ~~~g~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 186 (548)
...|++++|+. .|++........| +...+..++..+...|++++|+..|+++++.. +.+..++..++.++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34467777877 7776554321122 34557778888888888888888888888764 45677788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHH
Q 008925 187 YRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLM 266 (548)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 266 (548)
++|...++++.+..+. +..++..++.++...|++++|...++++.... +.+...+..+... .
T Consensus 115 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~--------- 176 (368)
T 1fch_A 115 LLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------A--------- 176 (368)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC----------------------
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------h---------
Confidence 8888888888776433 67778888888888888888888888887754 2222222111000 0
Q ss_pred HHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 008925 267 EEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEP--DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN 344 (548)
Q Consensus 267 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 344 (548)
. ...+. ..+..+...+ ..|++++|...++++++.. +. +..++..++..|...|++++|+..++++.+.. +.+
T Consensus 177 -~-~~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 177 -G-GAGLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred -h-hhccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 0 00000 1111222233 6778888888888887764 33 57778888888888888888888888887753 334
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----------C
Q 008925 345 VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP----------K 414 (548)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------~ 414 (548)
..++..++..+...|++++|+..|+++++.. +.+..++..++.+|.+.|++++|...++++.+..... .
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 6678888888888888888888888888764 5567788888888888888888888888877532111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 415 KSTIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 415 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
..++..++.++...|++++|..++++..+
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 46788888888888888888888776553
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-18 Score=169.60 Aligned_cols=397 Identities=10% Similarity=0.022 Sum_probs=294.1
Q ss_pred cccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChHHH
Q 008925 5 VGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINAC-SESGNVDEA 83 (548)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A 83 (548)
.+.|++++|..+|+.+++.. +.+...|..++..+.+.|++++|..+|++++.. .|+...|..++... ...|+.+.|
T Consensus 23 ~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTH
T ss_pred HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhH
Confidence 45799999999999999874 347789999999999999999999999999986 46888888877544 456787777
Q ss_pred HH----HHHHHHhc-CCCC-CHHHHHHHHHHHhc---------cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH---
Q 008925 84 MK----IFQKMKDS-GCKP-TTSTYNTLIKGYGN---------VGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAW--- 145 (548)
Q Consensus 84 ~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 145 (548)
.+ +|++.+.. |..| +...|...+..... .|++++|..+|++....+ ..+....|.......
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P-~~~~~~~~~~~~~~e~~~ 178 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP-MINIEQLWRDYNKYEEGI 178 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC-CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch-hhhHHHHHHHHHHHHHhh
Confidence 65 77777653 4433 56788888777654 688999999999998731 111123343332211
Q ss_pred ----------HhCCCHHHHHHHHHHH------HHCC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHH
Q 008925 146 ----------CSKNSIEEAWNVVYKM------VASG---IQPD--------AVTYNTLARAYAQY----GET----YRAE 190 (548)
Q Consensus 146 ----------~~~g~~~~a~~~~~~~------~~~~---~~~~--------~~~~~~l~~~~~~~----g~~----~~a~ 190 (548)
...++++.|..++.+. .+.. ++|+ ...|...+...... ++. .++.
T Consensus 179 ~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~ 258 (530)
T 2ooe_A 179 NIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVM 258 (530)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHH
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHH
Confidence 1234567777776653 2221 2443 23455554333222 232 4778
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 008925 191 QMLFEMQNNQVRPNERTCGIIVSGYCK-------EGNME-------DAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDS 256 (548)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 256 (548)
.+|++++...+ .+...|..++..+.+ .|+++ +|..+|++.++.-.|.+...|..++..+...|++
T Consensus 259 ~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 259 FAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 88998887643 378888888888775 79977 9999999998632356788999999999999999
Q ss_pred hhHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCHhHHHHHHH
Q 008925 257 DGVDKALTLMEEFGVKPDV-VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKG-YVRAGEPQKAESILT 334 (548)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~ 334 (548)
++|..+++.+.+..+. +. ..|..++..+.+.|+++.|..+|+++++.. +.+...+...+.. +...|++++|..+|+
T Consensus 338 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e 415 (530)
T 2ooe_A 338 EKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFE 415 (530)
T ss_dssp HHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 9999999999986422 33 578888888899999999999999999863 3344444433333 346899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 335 SMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIG-INPN--LKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 335 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
..++.. +.+...|..++..+.+.|+.++|..+|++++..+ .+|+ ...|...+......|+.+.+..+++++.+.
T Consensus 416 ~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 416 LGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 998753 3357889999999999999999999999999864 1222 447888888888999999999999998864
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-20 Score=176.99 Aligned_cols=276 Identities=10% Similarity=-0.040 Sum_probs=171.9
Q ss_pred CCCHHHHHH-HHHHHHHCCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008925 148 KNSIEEAWN-VVYKMVASGIQ-P--DAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMED 223 (548)
Q Consensus 148 ~g~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 223 (548)
.|++++|+. .+++....... | +...+..++..+...|++++|...++++.+..+. +..++..++.++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHH
Confidence 355555555 55544332100 0 2334555555566666666666666665554322 45555555555556666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 008925 224 AMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVK 303 (548)
Q Consensus 224 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (548)
|+..|+++.+.. +.+..++..++..+...|++++|...++.+.+..+. +...+..+... .. ..
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~~- 179 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------GA- 179 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------hh-
Confidence 666665555543 334455555555555555555555555555544321 11111000000 00 00
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHH
Q 008925 304 AGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKT 382 (548)
Q Consensus 304 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 382 (548)
.+ ...+..+...+ ..|++++|...++++.+..... +..++..++..+...|++++|+..|+++++.. +.+..+
T Consensus 180 ---~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 253 (368)
T 1fch_A 180 ---GL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLL 253 (368)
T ss_dssp ----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred ---cc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHH
Confidence 00 01111333344 8899999999999998864221 47789999999999999999999999999875 667889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 383 YETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
+..++..+...|++++|+..++++.+.. +.+...+..++.++...|++++|+..++++.+..|..
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999998753 3346689999999999999999999999999776655
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.9e-20 Score=173.49 Aligned_cols=276 Identities=9% Similarity=-0.009 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 135 DRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSG 214 (548)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (548)
...+..++..+.+.|++++|+..|+++++.. +.+..++..++.++...|++++|+..|+++.+..+. +..++..++.+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3446666667777777777777777766653 345666666666666777777777766666654322 45666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhH
Q 008925 215 YCKEGNMEDAMRFLYRMKELEVHPNL-VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGK 293 (548)
Q Consensus 215 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 293 (548)
|...|++++|+..|+++.+.. |+. ..+..+. .....+..+...+...|++++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHH
Confidence 666666666666666665532 211 1111100 112334556778888999999
Q ss_pred HHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 008925 294 CQEIFDDMVKAGIEP--DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKM 371 (548)
Q Consensus 294 a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 371 (548)
|..+++++++.. +. +..++..++..|...|++++|+..|+++.+.. +.+..+|..++.+|...|++++|+..|+++
T Consensus 196 A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 196 VKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998875 34 68889999999999999999999999988763 345778999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---C--------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008925 372 CEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVR---P--------KKSTIQLVADSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (548)
++.. +.+..++..++.+|...|++++|...|+++.+.... | +..+|..++.++...|+.+.|.++.++
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9875 566888999999999999999999999998753211 1 256888999999999999999988876
Q ss_pred HH
Q 008925 441 AE 442 (548)
Q Consensus 441 ~~ 442 (548)
.+
T Consensus 353 ~l 354 (365)
T 4eqf_A 353 DL 354 (365)
T ss_dssp CC
T ss_pred hH
Confidence 44
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-18 Score=170.03 Aligned_cols=388 Identities=11% Similarity=0.021 Sum_probs=242.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----C
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKD--------GMKPDSILFNAMINACSESGNVDEAMKIFQKMKDS-----G 94 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~ 94 (548)
....|+.|+.++...|++++|++.|++..+. .-+....+|..+..+|...|++++|...++++.+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3467888888888889999998888887542 11234567888888888888898888888887642 1
Q ss_pred -C-CCCHHHHHHHHHHHhcc--CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHCCCC
Q 008925 95 -C-KPTTSTYNTLIKGYGNV--GKPEESLKLLQLMSQDKNVKPNDRTYNILVRA---WCSKNSIEEAWNVVYKMVASGIQ 167 (548)
Q Consensus 95 -~-~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~ 167 (548)
. .....++..+..++... +++++|+..|++..... |.+...+..+..+ +...++.++|++.+++.++.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 0 12345666666555544 46888888888887652 3345555555444 345577778888888887764 4
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008925 168 PDAVTYNTLARAYAQ----YGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVF 243 (548)
Q Consensus 168 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 243 (548)
.+..++..+...+.. .+++++|.+.+++.....+. +..++..++..|...|++++|+..++++.+.. |.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 456666666655544 35667788888887765433 66777888888888888888888888887754 4455666
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 008925 244 NSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRA 323 (548)
Q Consensus 244 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (548)
..+...|...+.. ..... .. .........+..+.|...++.+.+.+ +.+..++..++..|...
T Consensus 285 ~~lg~~y~~~~~~---------~~~~~-~~------~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQ---------VMNLR-EN------GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH---------hhhHH-HH------HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 6666665321110 00000 00 00011112234678888888888775 55667788899999999
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 324 GEPQKAESILTSMRKYGVHPNVV--MFTTVIS-GWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAE 400 (548)
Q Consensus 324 g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (548)
|++++|+..|+++++....+... .+..+.. .....|++++|+..|+++++. .|+....... ...+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHH
Confidence 99999999999998864333221 2333333 234679999999999999986 4543332222 23345
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 401 ELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 401 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
.++++.++.+ +.+..++..++.++...|++++|++.++++.+..+..|
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 5566665542 34566899999999999999999999999987766554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.3e-20 Score=173.99 Aligned_cols=277 Identities=9% Similarity=-0.019 Sum_probs=196.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008925 98 TTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLA 177 (548)
Q Consensus 98 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 177 (548)
+...+..++..+.+.|++++|+.+|+++.... +.+...+..++.++...|++++|+..|+++++.. +.+..++..++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 34558889999999999999999999998763 5678899999999999999999999999999875 55688999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh
Q 008925 178 RAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSD 257 (548)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 257 (548)
.+|...|++++|...++++.+..+. +...+..+. .....+..+...+...|+++
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHH-HHCC--------------------------------------------CCHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHH
Confidence 9999999999999999999875321 111121110 11223344445555556666
Q ss_pred hHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 008925 258 GVDKALTLMEEFGVK-PDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSM 336 (548)
Q Consensus 258 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 336 (548)
+|...++.+.+..+. ++..++..+...+...|++++|...++++++.. +.+..++..++.+|...|++++|+..|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666665554322 146667777777777777777777777777664 556777777788888888888888888777
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008925 337 RKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGI-----------NPNLKTYETLLWGYGEAKQPWRAEELLQV 405 (548)
Q Consensus 337 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (548)
.+.. +.+..++..++.+|...|++++|...|+++++... ..+...|..+..++...|+.+.+..+.++
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7653 22466777788888888888888888888776420 01256788888999999998888776654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.3e-19 Score=165.04 Aligned_cols=280 Identities=10% Similarity=0.036 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 135 DRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSG 214 (548)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (548)
...+..++..+...|++++|..+|+++.+.. +.+..++..++.++...|++++|.+.++++.+..+. +..++..++..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHH
Confidence 3456677778888888888888888887764 446777778888888888888888888887776432 66777778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHH-HH-HHHhCCChh
Q 008925 215 YCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTI-MD-AWSSAGLMG 292 (548)
Q Consensus 215 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~ 292 (548)
+...|++++|...++++.... +.+...+..+... .|+......+ .. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 888888888888888887653 2222222222110 0111111122 22 266778889
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 008925 293 KCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMC 372 (548)
Q Consensus 293 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 372 (548)
+|...++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+..++..++..+...|++++|...|+++.
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999988875 5678888999999999999999999999988753 3357788899999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 373 EIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP-----------KKSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
+.. +.+..++..++.++...|++++|...++++.+....+ +...+..++.++...|++++|..+++++
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 875 5678889999999999999999999999988642111 3558888999999999999999998875
Q ss_pred H
Q 008925 442 E 442 (548)
Q Consensus 442 ~ 442 (548)
.
T Consensus 313 l 313 (327)
T 3cv0_A 313 V 313 (327)
T ss_dssp S
T ss_pred H
Confidence 4
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-16 Score=161.90 Aligned_cols=377 Identities=12% Similarity=0.126 Sum_probs=261.5
Q ss_pred cccccCChhhHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGH--RPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV 80 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 80 (548)
+|...|.+.+|+++++.++-.+. ..+....+.++.+..+. +..+..+..++.... + ...+...+...|.+
T Consensus 994 af~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 994 AFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELF 1065 (1630)
T ss_pred HHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCH
Confidence 45667788888888888774311 12334555566655555 556666666554421 1 23366677788888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008925 81 DEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYK 160 (548)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 160 (548)
++|..+|++.. ......+.++. ..+++++|.++.++. .+..+|..++.++...|++++|++.|.+
T Consensus 1066 EEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1066 EEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 88888888863 12223333332 567788888888765 2467788888888888888888888866
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008925 161 MVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240 (548)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 240 (548)
. .|...|..++.++.+.|++++|.++|....+.. +++...+.++.+|++.+++++...+. + .++.
T Consensus 1131 A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A 1131 A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence 3 467778888888888888888888888777654 23333445888888888877543332 2 3556
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGY 320 (548)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (548)
..|..++..|...|++++|...|..+ ..|..++.++.+.|+++.|.+.++++ .+..+|..+..+|
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHH
Confidence 67777888888888888888888874 36778888888888888888888876 3557788888888
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CChHH
Q 008925 321 VRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEA--KQPWR 398 (548)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~ 398 (548)
...|++..|......+. .+...+..++..|.+.|.+++|+.+++..+... +-....|+.|..+|.+. ++..+
T Consensus 1261 ve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred hhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHH
Confidence 88888888877766432 355667788899999999999999999888654 44445676666666653 34444
Q ss_pred HHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008925 399 AEELLQVMEEKGVRP------KKSTIQLVADSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 399 A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (548)
+.++|..-. +++| +...|..++-+|.+.|+++.|...+-+
T Consensus 1335 hlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1335 HLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 555444322 2333 345788888999999999998865544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7.2e-18 Score=157.82 Aligned_cols=279 Identities=10% Similarity=-0.004 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008925 99 TSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLAR 178 (548)
Q Consensus 99 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 178 (548)
...+..+...+...|++++|+.+|+++.+. .+.+...+..++.++...|++++|...++++.+.. +.+..++..++.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 345677888999999999999999999875 35678889999999999999999999999999874 557889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHcCCCh
Q 008925 179 AYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIK--GFLDIKDS 256 (548)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~ 256 (548)
.+...|++++|.+.++++.+.... +...+..+... .++......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 999999999999999999887443 23333222110 011111122212 25566777
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 008925 257 DGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSM 336 (548)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 336 (548)
++|...++.+.+..+ .+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 778877777776643 367778888888888899999999998888775 566788889999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC------------CHHHHHHHHHHHHhcCChHHHHHHHH
Q 008925 337 RKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINP------------NLKTYETLLWGYGEAKQPWRAEELLQ 404 (548)
Q Consensus 337 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (548)
.+.. +.+..++..++..+...|++++|.+.|+++.+.. +. +..++..+..++...|++++|..+++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8753 3356788889999999999999999999998764 22 46788999999999999999999887
Q ss_pred HHH
Q 008925 405 VME 407 (548)
Q Consensus 405 ~~~ 407 (548)
+..
T Consensus 311 ~~l 313 (327)
T 3cv0_A 311 QNV 313 (327)
T ss_dssp CCS
T ss_pred HHH
Confidence 543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-16 Score=160.52 Aligned_cols=384 Identities=13% Similarity=0.119 Sum_probs=206.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 008925 33 TTLVAALTRQKRFKSILSLISKVEKDGM--KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYG 110 (548)
Q Consensus 33 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (548)
...+++|...|.+.+|+++++++.-.+- ..+...-+.++.+..+. +..+..++.+++... + ...+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence 4445556666666666666666653211 12233444444444444 334444444443311 1 223555566
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAE 190 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 190 (548)
..|.+++|..+|++... .....+.++ ...+++++|.++.++. -+..+|..++.++...|++++|.
T Consensus 1061 ~lglyEEAf~IYkKa~~------~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV------NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred hCCCHHHHHHHHHHcCC------HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 66666666666666421 111122222 1455666666666543 24556666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcC
Q 008925 191 QMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFG 270 (548)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 270 (548)
+.|.+. .|...|..++.++.+.|++++|++++....+.. +++...+.++.+|.+.+++++.... ..
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~-- 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN-- 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh--
Confidence 666443 255566666666666666666666666665543 2222233466666666655532222 11
Q ss_pred CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 008925 271 VKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTT 350 (548)
Q Consensus 271 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 350 (548)
.++...+..+...|...|++++|..+|..+ ..|..++.+|.+.|++++|.+.+++.. +..+|..
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWke 1255 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKE 1255 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHH
Confidence 234445555666666666666666666653 256666666666666666666666552 4466666
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--
Q 008925 351 VISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAI-- 428 (548)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-- 428 (548)
+..+|...|+++.|......+ ..++..+..++..|.+.|.+++|+.+++..+... +-....+..++.++.+.
T Consensus 1256 v~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCH
Confidence 666666666666666554432 2344555566666666666666666666655432 11223454455444433
Q ss_pred CCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhccccccccccccccccccccCCCChhhh
Q 008925 429 GLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEHNGSSAAK 491 (548)
Q Consensus 429 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~~ 491 (548)
++..++.++|.+-....+. -........|..+.-+|.+-|.||.|..
T Consensus 1330 eklmEhlk~f~~rini~k~----------------~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVNIPKV----------------LRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHhcccchH----------------hHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3455555555542211110 0011233345667778888899998875
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-18 Score=160.13 Aligned_cols=378 Identities=13% Similarity=0.085 Sum_probs=172.7
Q ss_pred ccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 6 GKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMK 85 (548)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 85 (548)
+.|++++|.++++++ +++.+|..|+.++.+.|++++|++.|.+ .+|...|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 557799999999987 2234899999999999999999999965 3567788999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 008925 86 IFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASG 165 (548)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 165 (548)
.++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 88877764 4557788889999999999999887773 366679999999999999999999999976
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008925 166 IQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNS 245 (548)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 245 (548)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|..+...+. ..+.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHH
Confidence 47888999999999999999999988 278899999999999999999966554422 33333556
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH-HcCCCC------CHHHHHHHHH
Q 008925 246 LIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMV-KAGIEP------DIHVFSILAK 318 (548)
Q Consensus 246 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~------~~~~~~~l~~ 318 (548)
++..|.+.|.+++|..+++...... +.....|+.+..+|++- ++++..+.++... +.+++| +...|..+..
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999888765 45677788887777765 3444433333222 122233 3456788888
Q ss_pred HHHHcCCHhHHHHHHHHHHhC-CC-------------CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 008925 319 GYVRAGEPQKAESILTSMRKY-GV-------------HPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYE 384 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~-~~-------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 384 (548)
.|...++++.|... |.++ .. ..+...|-..+..|. +....++.-+...+...+ |. .
T Consensus 291 ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~l--d~---~ 360 (449)
T 1b89_A 291 LYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRL--DH---T 360 (449)
T ss_dssp HHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGC--CH---H
T ss_pred HHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhcc--Cc---H
Confidence 89999999988664 3332 01 112333444444443 112222222222222111 11 2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008925 385 TLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (548)
..+..+.+.|...-+..+++..... .+..+-..+-+++....+++.-+.-++.
T Consensus 361 r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 361 RAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2334455666666666666555542 3455566677778888887776555554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-19 Score=164.47 Aligned_cols=283 Identities=13% Similarity=0.167 Sum_probs=136.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 008925 41 RQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK 120 (548)
Q Consensus 41 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 120 (548)
+.|++++|.+.++++. ++.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5678999999999872 2348999999999999999999999753 577799999999999999999999
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008925 121 LLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQ 200 (548)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 200 (548)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 83 yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 83 YLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 88777653 4557788999999999999999988874 367789999999999999999999999977
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHH
Q 008925 201 VRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFST 280 (548)
Q Consensus 201 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (548)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH
Confidence 47899999999999999999999988 3789999999999999999999655443 2233444557
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh-CCCCC------CHHHHHHHHH
Q 008925 281 IMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRK-YGVHP------NVVMFTTVIS 353 (548)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p------~~~~~~~l~~ 353 (548)
++..|.+.|++++|..+++..+... +.....|+-|.-+|++- ++++..+.++...+ .+++| +...|..+..
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999776 67788899888888765 34444444433322 12222 3557888999
Q ss_pred HHhccCChHHHHHH
Q 008925 354 GWCNAVKMQRAMSI 367 (548)
Q Consensus 354 ~~~~~g~~~~A~~~ 367 (548)
.|.+.++++.|...
T Consensus 291 ly~~~~e~d~A~~t 304 (449)
T 1b89_A 291 LYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHhhchHHHHHHH
Confidence 99999999988763
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-17 Score=151.08 Aligned_cols=250 Identities=11% Similarity=0.052 Sum_probs=137.7
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008925 144 AWCSKNSIEEAWNVVYKMVASGIQPDA--VTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNM 221 (548)
Q Consensus 144 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 221 (548)
-....|++..|+..+++.... .|+. .....+.++|...|+++.|+..++. ..+|+..++..+...+...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 344566666666666554332 2222 2334456666666666666654433 1233455555566666666666
Q ss_pred HHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 008925 222 EDAMRFLYRMKELEV-HPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDD 300 (548)
Q Consensus 222 ~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (548)
++|++.++++...+. |.+...+..+...+...|++++|.+.++. +.+...+..++..+.+.|++++|...+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666655442 33445555555666666666666666654 23455556666666666666666666666
Q ss_pred HHHcCCCCCHHHH--HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 008925 301 MVKAGIEPDIHVF--SILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINP 378 (548)
Q Consensus 301 ~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 378 (548)
+.+.. +.+.... ..++..+...|++++|..+|+++.+.. +.+...++.++.++.+.|++++|...|+++++.. |.
T Consensus 156 ~~~~~-p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 156 MQDQD-EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhC-cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 66553 2221111 112223333456666666666665542 3345556666666666666666666666666554 44
Q ss_pred CHHHHHHHHHHHHhcCChHH-HHHHHHHHHH
Q 008925 379 NLKTYETLLWGYGEAKQPWR-AEELLQVMEE 408 (548)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 408 (548)
+..++..++..+...|+.++ +.++++++.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55566666666666666554 3455566554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-17 Score=150.05 Aligned_cols=249 Identities=14% Similarity=0.102 Sum_probs=130.8
Q ss_pred HhccCChHHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008925 109 YGNVGKPEESLKLLQLMSQDKNVKPND--RTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGET 186 (548)
Q Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 186 (548)
....|++..|+..++..... .|+. .....+.++|...|+++.|+..++.. -+|+..++..+...+...++.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 33456666666655554321 2222 23344555666666666665544331 134445555555556666666
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 008925 187 YRAEQMLFEMQNNQVRP-NERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTL 265 (548)
Q Consensus 187 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 265 (548)
++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666655544222 344445555556666666666666554 34555555666666666666666666666
Q ss_pred HHHcCCCCCHHHH---HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC
Q 008925 266 MEEFGVKPDVVTF---STIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVH 342 (548)
Q Consensus 266 ~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 342 (548)
+.+.. |+.... ...+..+...|++++|..+|+++++.. +.+...++.++.++.+.|++++|...|+++++.. +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 55543 221110 112222333455666666666666553 4555566666666666666666666666655542 2
Q ss_pred CCHHHHHHHHHHHhccCChHH-HHHHHHHHHHc
Q 008925 343 PNVVMFTTVISGWCNAVKMQR-AMSIYEKMCEI 374 (548)
Q Consensus 343 p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 374 (548)
-+..++..++..+...|+.++ +.++++++.+.
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 244455556655555665544 34555666554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-17 Score=159.12 Aligned_cols=373 Identities=12% Similarity=0.051 Sum_probs=241.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 008925 34 TLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV---DEAMKIFQKMKDSGCKPTTSTYNTLIKGYG 110 (548)
Q Consensus 34 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (548)
.+...+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|...|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35666777888888888888887765 223345566666667777 7888888887753 4455666666454
Q ss_pred ccC-----ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008925 111 NVG-----KPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSI---EEAWNVVYKMVASGIQPDAVTYNTLARAYAQ 182 (548)
Q Consensus 111 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (548)
..+ ++++|+..|++....+ +...+..|...|...+.. .++.+.+.+....| +......|...|..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 444 6778888888877642 233666677777665543 34555566555544 45566677778887
Q ss_pred cCCHHHHH----HHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC--
Q 008925 183 YGETYRAE----QMLFEMQNNQVRPNERTCGIIVSGYCKEG---NMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDI-- 253 (548)
Q Consensus 183 ~g~~~~a~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 253 (548)
.+.++++. .+++.... .++..+..+..+|...| ++++|+..|++..+.+ +++...+..+...|...
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATL 228 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGG
T ss_pred CCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCC
Confidence 77554444 44444333 24448888888888888 8999999999998877 56666667777777655
Q ss_pred --CChhhHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----
Q 008925 254 --KDSDGVDKALTLMEEFGVKPDVVTFSTIMDA-W--SSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAG---- 324 (548)
Q Consensus 254 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 324 (548)
+++++|...++... .+ ++..+..+... + ...+++++|...|++..+.| +...+..|..+|. .|
T Consensus 229 ~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp SSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSC
T ss_pred CCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCC
Confidence 68889999998887 33 45566667766 4 46789999999999998865 6778888888887 55
Q ss_pred -CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCC
Q 008925 325 -EPQKAESILTSMRKYGVHPNVVMFTTVISGWCN----AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE----AKQ 395 (548)
Q Consensus 325 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 395 (548)
++++|...|++.. . -+...+..|...|.. ..++++|...|+++.+.| +......|...|.. ..+
T Consensus 301 ~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp CCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCC
T ss_pred CCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCC
Confidence 8999999999887 3 366777888877766 448999999999999876 34455667777764 468
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHh
Q 008925 396 PWRAEELLQVMEEKGVRPKKSTIQLVADSW--RAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 396 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 443 (548)
+.+|..+|+...+.|. ......+..+. ...++..+|.++.++..+
T Consensus 374 ~~~A~~~~~~A~~~g~---~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 374 PLNAYVFSQLAKAQDT---PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHHTTCC---HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999988762 22222222222 223467777777777653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-16 Score=151.45 Aligned_cols=373 Identities=12% Similarity=0.048 Sum_probs=250.9
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRF---KSILSLISKVEKDGMKPDSILFNAMINACSESG-- 78 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 78 (548)
+.+.|++++|+..|+.+.+.| +..++..|+..+...|+. ++|...|++..+. ++..+..|...+...+
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--C
T ss_pred HHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCC
Confidence 467899999999999998875 344566777888888888 8999999998754 4556667777555555
Q ss_pred ---ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChH---HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHH
Q 008925 79 ---NVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPE---ESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIE 152 (548)
Q Consensus 79 ---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (548)
++++|+..|++..+.|. + ..+..|...|...+..+ ++.+.+...... .+......+...|...+.++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~----g~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA----GYPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH----TCTTHHHHHHHHHHHHTCGG
T ss_pred CCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcc
Confidence 78999999999998763 2 36667777777665433 345555554432 24566778888888888555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHH
Q 008925 153 EAWNVVYKMVASGIQPDAVTYNTLARAYAQYG---ETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKE----GNMEDAM 225 (548)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~ 225 (548)
++......+.+.-...+...+..|...|...| ++++|++.|++..+.+.. +...+..+..+|... +++++|+
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 54444333222211223448888999999999 999999999999988754 666667788888665 7999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHH-H--HcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-----ChhHHHHH
Q 008925 226 RFLYRMKELEVHPNLVVFNSLIKG-F--LDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAG-----LMGKCQEI 297 (548)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~ 297 (548)
.+|++.. +.++..+..+... + ...+++++|...+++..+.+ ++..+..+...|. .| ++++|...
T Consensus 238 ~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 238 ALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 9999987 3566777777777 4 56889999999999999876 6677788888887 45 99999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHH
Q 008925 298 FDDMVKAGIEPDIHVFSILAKGYVR----AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN----AVKMQRAMSIYE 369 (548)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 369 (548)
|++.. +.++..+..|..+|.. ..++++|...|++..+.| +......|...|.. ..+..+|...|+
T Consensus 310 ~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 310 FEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 99888 4467888888888876 349999999999999876 34556677777764 568999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008925 370 KMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (548)
++.+.| .++.......+......++..+|..+.++..
T Consensus 383 ~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 383 LAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999877 3333332222222223344555666555544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-16 Score=137.59 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=43.5
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 008925 289 GLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIY 368 (548)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 368 (548)
|++++|+..++++++.. |.+...+..+..++...|++++|+..|+++.+.. .+...+..++.++...|++++|+..|
T Consensus 98 g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444444432 2333444444444444444444444444444433 23344444444444444444444444
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008925 369 EKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQ 404 (548)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (548)
+++++.. |.+...+..+..++...|++++|+..++
T Consensus 175 ~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 175 AKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4444432 3333444444444444444444444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.6e-16 Score=138.99 Aligned_cols=224 Identities=13% Similarity=0.050 Sum_probs=132.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCC--CC----HHHHHHH
Q 008925 208 CGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVK--PD----VVTFSTI 281 (548)
Q Consensus 208 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 281 (548)
+..++..+...|++++|+.+|+++.+.. .+...+..+...+...|++++|...++.+.+..+. ++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444433 33344444444444444444444444444332111 11 3555666
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 008925 282 MDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKM 361 (548)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 361 (548)
..++...|++++|...++++.+. .|+. ..+...|++++|...++++.... +.+...+..++..+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 66666667777777777666665 2332 23455566777777777776642 12344666777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 362 QRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
++|+..|+++++.. +.+..++..++.++...|++++|+..++++++.. +.+...+..++.++...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777664 5566777777777777777777777777777642 223556777777777777777777777776
Q ss_pred Hhcc
Q 008925 442 EEDR 445 (548)
Q Consensus 442 ~~~~ 445 (548)
.+..
T Consensus 234 ~~~~ 237 (258)
T 3uq3_A 234 RTKD 237 (258)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 6544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-16 Score=139.64 Aligned_cols=224 Identities=11% Similarity=-0.007 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHH
Q 008925 171 VTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEV--HPN----LVVFN 244 (548)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 244 (548)
..+..++..+...|++++|...++++.+.. .+..++..++.++...|++++|+..++++.+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344555555555556666655555555544 3555555555666666666666666655544320 011 35566
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 008925 245 SLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAG 324 (548)
Q Consensus 245 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 324 (548)
.+...+...|++++|...++.+.+.. |+. ..+...|++++|...++.+.... +.+...+..++..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 66666666666666666666666643 232 23455567778888888877764 445567777888888888
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008925 325 EPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQ 404 (548)
Q Consensus 325 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (548)
++++|...++++.+.. +.+...+..++..+...|++++|+..|+++++.. +.+...+..++.++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888887753 3356677888888888888888888888888765 5567788888888888888888888888
Q ss_pred HHHH
Q 008925 405 VMEE 408 (548)
Q Consensus 405 ~~~~ 408 (548)
++.+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.8e-13 Score=134.06 Aligned_cols=435 Identities=9% Similarity=0.023 Sum_probs=306.3
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hHHHHH
Q 008925 9 KPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGN---VDEAMK 85 (548)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 85 (548)
...+.+..|+..+..++. |..+|..++..+.+.+.++.+..+|+.+... +|.....|...+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~np~-d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPT-DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 355667778888887764 9999999999999999999999999999987 67788899999999899999 999999
Q ss_pred HHHHHHhcC-CCCCHHHHHHHHHHHhccCCh--------HHHHHHHHHhhhCCCC-CC-CHHHHHHHHHHHHh-------
Q 008925 86 IFQKMKDSG-CKPTTSTYNTLIKGYGNVGKP--------EESLKLLQLMSQDKNV-KP-NDRTYNILVRAWCS------- 147 (548)
Q Consensus 86 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~------- 147 (548)
+|++.+... .+|++..|...+....+.++. +...++|+.....-|. .+ +...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999998863 138899998888766655543 3344788877665444 34 45788887766442
Q ss_pred --CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhC--CC----C----
Q 008925 148 --KNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQ-------------YGETYRAEQMLFEMQNN--QV----R---- 202 (548)
Q Consensus 148 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~~--~~----~---- 202 (548)
.++++.+..+|++++......-..+|......-.. ..+++.|...+.++... ++ +
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 34577889999998863211112333322211111 12334455555443210 11 1
Q ss_pred -------C--C------HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHH
Q 008925 203 -------P--N------ERTCGIIVSGYCKEG-------NMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVD 260 (548)
Q Consensus 203 -------~--~------~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 260 (548)
| + ...|...+..--..+ ..+.+..+|++++.. .+.....|...+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 1 0 123333333222222 134456778888775 3567889999998888889999996
Q ss_pred -HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC---------CCCC------------HHHHHHHHH
Q 008925 261 -KALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG---------IEPD------------IHVFSILAK 318 (548)
Q Consensus 261 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~l~~ 318 (548)
++++...... +.+...+...+......|+++.|..+|+.++... ..|+ ..+|...+.
T Consensus 364 r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 364 TKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 9999998764 4466677778888889999999999999998641 0132 346788888
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA-VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPW 397 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 397 (548)
...+.|+.+.|..+|..+.+.-..+....|...+..-.+. ++.+.|.++|+..++. ++.+...|...+......|+.+
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 8888999999999999998751112233443333322333 5599999999999987 3667777778888888899999
Q ss_pred HHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 398 RAEELLQVMEEKGVRPK--KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 398 ~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
.|..+|++.+.....++ ...|..++..-...|+.+.+.++.+++.+..|..
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999987542222 3478888888889999999999999999777654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-15 Score=138.12 Aligned_cols=237 Identities=9% Similarity=0.018 Sum_probs=166.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 008925 207 TCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKP--DVVTFSTIMDA 284 (548)
Q Consensus 207 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 284 (548)
.+......+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+....+ ....+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455566666677777777777666643 3344566666667777777777777777666632111 23456777788
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 008925 285 WSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRA 364 (548)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 364 (548)
+...|++++|...++++.+.. +.+..++..++..|...|++++|+..++++.+.. +.+...+..++..+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888765 5566788888888888888888888888887753 33456677777233344588888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHHcCCHHHH
Q 008925 365 MSIYEKMCEIGINPNLKTYETLLWGYGEAKQ---PWRAEELLQVMEEKG-VRPK------KSTIQLVADSWRAIGLAREA 434 (548)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A 434 (548)
++.|+++++.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ...+..++.++...|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888865 5567777888888888887 778888888877531 1133 24677788888888999999
Q ss_pred HHHHHHHHhccCC
Q 008925 435 KRVLKSAEEDRQS 447 (548)
Q Consensus 435 ~~~~~~~~~~~~~ 447 (548)
...++++.+.+|.
T Consensus 241 ~~~~~~al~~~p~ 253 (272)
T 3u4t_A 241 DAAWKNILALDPT 253 (272)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCcc
Confidence 9999888766654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.4e-16 Score=134.81 Aligned_cols=115 Identities=11% Similarity=-0.024 Sum_probs=51.6
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 008925 254 KDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESIL 333 (548)
Q Consensus 254 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 333 (548)
|++++|...++...+..+. +...+..+..++...|++++|+..|+++++.+ .+...+..+..+|...|++++|+..|
T Consensus 98 g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555554444321 34445555555555555555555555555554 44555555555555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 008925 334 TSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMC 372 (548)
Q Consensus 334 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 372 (548)
+++.+.. +.+...+..+...+...|++++|+..|++..
T Consensus 175 ~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 175 AKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 5555432 1234445555555555555555555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.6e-15 Score=135.42 Aligned_cols=231 Identities=10% Similarity=0.001 Sum_probs=99.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHh
Q 008925 140 ILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPN--ERTCGIIVSGYCK 217 (548)
Q Consensus 140 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 217 (548)
..+..+...|++++|+..|+++++.. +.+...+..++.++...|++++|++.++++.+....++ ..++..++.++..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 33444444455555555555444432 22233444444444455555555555544444211111 1224444444555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 008925 218 EGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEI 297 (548)
Q Consensus 218 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 297 (548)
.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+..+...+...+++++|...
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544432 2233444444444444444444444444444332 12333343444122222355555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCC---HhHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHhccCChHHHHHH
Q 008925 298 FDDMVKAGIEPDIHVFSILAKGYVRAGE---PQKAESILTSMRKYG-VHPN------VVMFTTVISGWCNAVKMQRAMSI 367 (548)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A~~~ 367 (548)
++++++.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..+|..+...|...|++++|...
T Consensus 165 ~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555443 3334444444444444444 444544444443310 0011 12344444444445555555555
Q ss_pred HHHHHHc
Q 008925 368 YEKMCEI 374 (548)
Q Consensus 368 ~~~~~~~ 374 (548)
|+++++.
T Consensus 244 ~~~al~~ 250 (272)
T 3u4t_A 244 WKNILAL 250 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=5.9e-15 Score=139.23 Aligned_cols=247 Identities=11% Similarity=0.018 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008925 170 AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGN-MEDAMRFLYRMKELEVHPNLVVFNSLIK 248 (548)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (548)
...|..+...+...|++++|+..++++++..+. +..+|..+..++...|+ +++|+..|++++... +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 345666666667777777777777777665443 56667777777777775 777777777777654 455677777777
Q ss_pred HHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHh
Q 008925 249 GFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR-AGEPQ 327 (548)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 327 (548)
++...|++++|+..++++++..+. +...|..+..++...|++++|+..++++++.+ +.+..+|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 777777777777777777776533 56677777777777777777777777777765 5567777777777777 45546
Q ss_pred HH-----HHHHHHHHhCCCCCCHHHHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC------
Q 008925 328 KA-----ESILTSMRKYGVHPNVVMFTTVISGWCNAV--KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK------ 394 (548)
Q Consensus 328 ~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 394 (548)
+| +..+++++... +-+...|..+...+...| ++++|++.++++ +.. +.+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 66 46677776643 224556777777777766 577777777776 432 555667777777777653
Q ss_pred ---ChHHHHHHHHHH-HHCCCCCCHH-HHHHHHHHH
Q 008925 395 ---QPWRAEELLQVM-EEKGVRPKKS-TIQLVADSW 425 (548)
Q Consensus 395 ---~~~~A~~~~~~~-~~~~~~p~~~-~~~~l~~~~ 425 (548)
..++|+++++++ .+. .|... .|..++..+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 246777777777 542 45433 555554444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-14 Score=129.32 Aligned_cols=222 Identities=11% Similarity=-0.014 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHcCCCCCHHHHHH
Q 008925 205 ERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLD----IKDSDGVDKALTLMEEFGVKPDVVTFST 280 (548)
Q Consensus 205 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (548)
..++..+...+...|++++|+..|++..+ +.+..++..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 33444444444455555555555555444 2233444444444544 555555555555554443 3444555
Q ss_pred HHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008925 281 IMDAWSS----AGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR----AGEPQKAESILTSMRKYGVHPNVVMFTTVI 352 (548)
Q Consensus 281 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 352 (548)
+...+.. .+++++|...|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5555555 556666666666555543 44555555555655 566666666666665543 344455555
Q ss_pred HHHhc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008925 353 SGWCN----AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE----AKQPWRAEELLQVMEEKGVRPKKSTIQLVADS 424 (548)
Q Consensus 353 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 424 (548)
..|.. .+++++|+..|+++.+.+ +...+..+...|.. .+++++|+..+++..+.+ | ...+..++.+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHH
Confidence 55554 566666666666666543 34555556666666 666666666666665542 1 4455555666
Q ss_pred HHH----cCCHHHHHHHHHHHHhc
Q 008925 425 WRA----IGLAREAKRVLKSAEED 444 (548)
Q Consensus 425 ~~~----~g~~~~A~~~~~~~~~~ 444 (548)
+.. .|++++|.++++++.+.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHc
Confidence 665 56666666666665543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=5.9e-15 Score=139.27 Aligned_cols=249 Identities=8% Similarity=0.049 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008925 135 DRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGE-TYRAEQMLFEMQNNQVRPNERTCGIIVS 213 (548)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 213 (548)
...|..+...+...|++++|+..++++++.. +-+...|+.+..++...|+ +++|+..|++++...+. +..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3566777777778888888888888887764 4457777888888888886 88888888888776554 6778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-CCChh
Q 008925 214 GYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSS-AGLMG 292 (548)
Q Consensus 214 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 292 (548)
++...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++++..+. +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 8888888888888888888765 566788888888888888888888888888887643 67788888888888 55557
Q ss_pred HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC------
Q 008925 293 KC-----QEIFDDMVKAGIEPDIHVFSILAKGYVRAG--EPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAV------ 359 (548)
Q Consensus 293 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------ 359 (548)
+| +..++++++.. +.+...|..+..++...| ++++|++.+.++ +.. +.+...+..++..|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 77 47788888775 567778888888888877 588888888887 432 335667788888887764
Q ss_pred --C-hHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH
Q 008925 360 --K-MQRAMSIYEKM-CEIGINPNLKTYETLLWGYG 391 (548)
Q Consensus 360 --~-~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 391 (548)
+ .++|+++|+++ .+.+ +.....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 2 58899999988 6653 444556666665554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=8.3e-14 Score=126.42 Aligned_cols=221 Identities=13% Similarity=0.045 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008925 171 VTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCK----EGNMEDAMRFLYRMKELEVHPNLVVFNSL 246 (548)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (548)
.++..+...+...|++++|.+.|++..+. .+..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 33444444444444444444444444441 133344444444444 455555555555554432 34444445
Q ss_pred HHHHHc----CCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 247 IKGFLD----IKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSS----AGLMGKCQEIFDDMVKAGIEPDIHVFSILAK 318 (548)
Q Consensus 247 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (548)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...++++.+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 555554 555555555555555442 44455555555555 566666666666666543 3455555666
Q ss_pred HHHH----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 319 GYVR----AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN----AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390 (548)
Q Consensus 319 ~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (548)
.|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|+++.+.+ +...+..+...|
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 6665 666666666666666542 34555566666666 666666666666666643 255566666666
Q ss_pred Hh----cCChHHHHHHHHHHHHC
Q 008925 391 GE----AKQPWRAEELLQVMEEK 409 (548)
Q Consensus 391 ~~----~g~~~~A~~~~~~~~~~ 409 (548)
.. .+++++|.++|++..+.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHHc
Confidence 66 66666677766666654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-14 Score=128.28 Aligned_cols=204 Identities=9% Similarity=0.010 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 240 LVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKG 319 (548)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (548)
...+..++..+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4566677777777888888888888777764 3356777778888888888888888888888765 5567788888888
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 320 YVRAGEPQKAESILTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWR 398 (548)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (548)
|...|++++|..+++++.+.+..| +...+..++..+...|++++|...|+++.+.. +.+...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887732234 34567778888888888888888888888765 5567788888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 399 AEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 399 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
|...++++.+.. +.+...+..++.++...|++++|.++++++.+..|.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 888888887642 344557777888888888888888888887765543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4.9e-14 Score=126.24 Aligned_cols=201 Identities=13% Similarity=-0.012 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGY 109 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (548)
..+..++..+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 455666666666666666666666666542 3355566666666666666666666666666542 23455666666666
Q ss_pred hccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008925 110 GNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRA 189 (548)
Q Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 189 (548)
...|++++|+..++++......+.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666665411112234555566666666666666666666665543 33455556666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 190 EQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKEL 234 (548)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 234 (548)
...++.+.+... .+...+..+...+...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666555432 24455555555666666666666666665553
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-15 Score=137.45 Aligned_cols=224 Identities=11% Similarity=-0.026 Sum_probs=144.2
Q ss_pred ccccCChhhHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHR---PTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV 80 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 80 (548)
+...|++++|+..|+.+++.... .+..++..++..+...|++++|+..|+++.+.. +.+..++..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 44567788888888888775321 134567777777888888888888888877763 44667777777778888888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008925 81 DEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYK 160 (548)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 160 (548)
++|+..|+++.+.. +.+..++..+..++...|++++|+..|+++... .|+.......+..+...|++++|...+++
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88888888777653 335667777777777777777777777777664 23333333344444556777777777766
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 161 MVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRP---NERTCGIIVSGYCKEGNMEDAMRFLYRMKEL 234 (548)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 234 (548)
..... +++...+ .++..+...++.++|...++......... +..++..++.++...|++++|...|+++...
T Consensus 170 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 170 HFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 66543 3333333 35555666666666766666655432110 1345556666666666666666666666654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-14 Score=123.48 Aligned_cols=204 Identities=12% Similarity=0.005 Sum_probs=155.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIK 107 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 107 (548)
+...+..++..+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45677888888888888888888888888763 4567788888888888888888888888887763 446777888888
Q ss_pred HHhcc-CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008925 108 GYGNV-GKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGET 186 (548)
Q Consensus 108 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 186 (548)
.+... |++++|+..++++......+.+...+..++.++...|++++|+..++++.+.. +.+...+..++..+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 88888888888887622223335677788888888888888888888887764 34577777788888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 187 YRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKEL 234 (548)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 234 (548)
++|...++.+.+..+..+...+..+...+...|+.+.|..+++.+...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 888888887776543236666677777777788888888887777653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=160.92 Aligned_cols=118 Identities=9% Similarity=0.120 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 008925 275 VVTFSTIMDAWSSAGLMGKCQEIFDDMV---KAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTV 351 (548)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 351 (548)
..+|+++|++|++.|++++|..+|..|. ..|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4566666666666666666666665554 2355666666666666666666666666666666666666666666666
Q ss_pred HHHHhccCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 352 ISGWCNAVKM-QRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 352 ~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 6666666653 5666666666666666666666666654444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=9.2e-15 Score=130.17 Aligned_cols=198 Identities=12% Similarity=0.129 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 206 RTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAW 285 (548)
Q Consensus 206 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 285 (548)
..+..++..+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+..+ .+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHH
Confidence 344444555555555555555555555432 33445555555555555555555555555554432 2445555555666
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH
Q 008925 286 SSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAM 365 (548)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 365 (548)
...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666665553 4455556666666666666666666666665532 224455556666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 366 SIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
..|+++.+.. +.+..++..++.+|...|++++|...++++.+
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 6666666543 44455666666666666666666666666655
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-14 Score=123.28 Aligned_cols=202 Identities=9% Similarity=-0.013 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 240 LVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKG 319 (548)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (548)
...+..++..+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3444455555555555555555555554443 1234455555555666666666666666665543 3445556666666
Q ss_pred HHHc-CCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 008925 320 YVRA-GEPQKAESILTSMRKYGVHPN-VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPW 397 (548)
Q Consensus 320 ~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 397 (548)
+... |++++|...++++.+.+..|+ ...+..++..+...|++++|+..|+++.+.. +.+...+..++.++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 6666 666666666666655211222 3455556666666666666666666666543 344556666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008925 398 RAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEED 444 (548)
Q Consensus 398 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (548)
+|...++++.+.....+...+..++..+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666666655321123445555555556666666666666665433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-14 Score=129.44 Aligned_cols=210 Identities=10% Similarity=0.054 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008925 171 VTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGF 250 (548)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (548)
..|..++..+...|++++|...++++.+.... +...+..++..+...|++++|+..++++.+.. +.+..++..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 33444444455555555555555555443222 34445555555555555555555555555432 33445555555555
Q ss_pred HcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 008925 251 LDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAE 330 (548)
Q Consensus 251 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 330 (548)
...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 55666666666665555543 2245556666666667777777777777666654 445666677777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008925 331 SILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETL 386 (548)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 386 (548)
..++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 7777766642 2345566777777777777777777777777654 3444444443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=146.29 Aligned_cols=282 Identities=11% Similarity=0.084 Sum_probs=179.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-
Q 008925 132 KPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD----AVTYNTLARAYAQYGETYRAEQMLFEMQNN----QVR- 202 (548)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~- 202 (548)
......+...+..+...|++++|+..|+++++.. +.+ ..++..+...+...|++++|...++++... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3445556666667777777777777777776653 222 245566666677777777777766665432 111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCC-CCCHHHHHHH
Q 008925 203 PNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGV-KPDVVTFSTI 281 (548)
Q Consensus 203 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l 281 (548)
....++..+...+...|++++|...++++.+.. + ..+. .....++..+
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~-----------------------------~~~~~~~~~~~~~~l 133 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS--R-----------------------------ELNDKVGEARALYNL 133 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H-----------------------------HHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--H-----------------------------hcccccchHHHHHHH
Confidence 113344555555666666666666665554321 0 0000 0012344555
Q ss_pred HHHHHhCCC--------------------hhHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 008925 282 MDAWSSAGL--------------------MGKCQEIFDDMVKA----GI-EPDIHVFSILAKGYVRAGEPQKAESILTSM 336 (548)
Q Consensus 282 ~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 336 (548)
...+...|+ +++|...+.+..+. +. +....++..+...|...|++++|...++++
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555566 66676666665532 10 112346778888888899999999988887
Q ss_pred HhCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008925 337 RKYGV-HPN----VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGI-NPN----LKTYETLLWGYGEAKQPWRAEELLQVM 406 (548)
Q Consensus 337 ~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (548)
.+... .++ ..++..++..+...|++++|...++++.+... .++ ..++..++..|...|++++|...++++
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 64210 112 23678888889999999999999999875310 112 457788899999999999999999988
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008925 407 EEK----GVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 407 ~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
.+. +-.+. ..++..++.++...|++++|...++++.+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 742 11111 4477788999999999999999999987544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-16 Score=158.73 Aligned_cols=152 Identities=13% Similarity=0.137 Sum_probs=126.4
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 008925 239 NLVVFNSLIKGFLDIKDSDGVDKALTLMEE---FGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSI 315 (548)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 315 (548)
-..+|++++.+|++.|+.++|.++|..|.+ .|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..+|++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 347999999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCH-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC------HHHHHHHHH
Q 008925 316 LAKGYVRAGEP-QKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPN------LKTYETLLW 388 (548)
Q Consensus 316 l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~ 388 (548)
||.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+ +..++..+++ .-++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999984 7899999999999999999999999876544 3444444444 2234443 334455666
Q ss_pred HHHhcCC
Q 008925 389 GYGEAKQ 395 (548)
Q Consensus 389 ~~~~~g~ 395 (548)
.|.+.+.
T Consensus 281 l~s~d~~ 287 (1134)
T 3spa_A 281 VYAKDGR 287 (1134)
T ss_dssp HHCCCSC
T ss_pred HHccCCC
Confidence 6766653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=9.6e-15 Score=132.77 Aligned_cols=245 Identities=11% Similarity=-0.076 Sum_probs=138.5
Q ss_pred CCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHH
Q 008925 184 GETYRAEQMLFEMQNNQVR---PNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVD 260 (548)
Q Consensus 184 g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 260 (548)
|++++|+..++++.+.... .+..++..++..+...|++++|...|+++.+.. +.+..++..++..+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4445555555554443211 123444455555555555555555555555533 334555555666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 008925 261 KALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYG 340 (548)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 340 (548)
..++.+.+..+ .+...+..+..++...|++++|...++++.+.. |+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 66665555432 244566666667777777777777777776653 222223333334455677777777776666542
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008925 341 VHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGIN---PNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKST 417 (548)
Q Consensus 341 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 417 (548)
+++...+ .++..+...++.++|...++++.+.... .+..++..++.+|...|++++|...|+++.+. .|+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--
Confidence 2233333 3555666667777777777776653210 11466777788888888888888888888764 3432
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 008925 418 IQLVADSWRAIGLAREAKRVL 438 (548)
Q Consensus 418 ~~~l~~~~~~~g~~~~A~~~~ 438 (548)
+...+.++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 222355666777777777665
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.8e-13 Score=124.27 Aligned_cols=224 Identities=12% Similarity=-0.002 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cCCCh-------hhHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 008925 222 EDAMRFLYRMKELEVHPNLVVFNSLIKGFL-------DIKDS-------DGVDKALTLMEE-FGVKPDVVTFSTIMDAWS 286 (548)
Q Consensus 222 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 286 (548)
++|..+|++++... +.++..|..++..+. ..|++ ++|..++++..+ .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 67778888887753 566778887777765 35776 889999999888 33 335678888999999
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCChHHH
Q 008925 287 SAGLMGKCQEIFDDMVKAGIEPDIH-VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGW-CNAVKMQRA 364 (548)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A 364 (548)
..|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|+++.+.. +++...|...+... ...|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999863 33444 89999999999999999999999999864 23445555444332 236999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 365 MSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKG-VRPK--KSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
..+|+++++.. +.+...|..++..+.+.|++++|..+|+++++.. +.|+ ...|..++......|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999864 5678889999999999999999999999999863 4553 558888899999999999999999999
Q ss_pred HhccCCCCC
Q 008925 442 EEDRQSMPN 450 (548)
Q Consensus 442 ~~~~~~~~~ 450 (548)
.+..|..+.
T Consensus 268 ~~~~p~~~~ 276 (308)
T 2ond_A 268 FTAFREEYE 276 (308)
T ss_dssp HHHTTTTTS
T ss_pred HHHcccccc
Confidence 987776543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=7e-15 Score=141.95 Aligned_cols=304 Identities=11% Similarity=0.057 Sum_probs=167.6
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC
Q 008925 26 RPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPD----SILFNAMINACSESGNVDEAMKIFQKMKDS----GCKP 97 (548)
Q Consensus 26 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~ 97 (548)
.+....+...+..+...|++++|+..|+++.+.+ +.+ ..++..+...+...|++++|...++++... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3455667778888888888899988888888763 333 346777888888888888888888876542 1111
Q ss_pred -CHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhCCC--------------------HH
Q 008925 98 -TTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPN----DRTYNILVRAWCSKNS--------------------IE 152 (548)
Q Consensus 98 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~--------------------~~ 152 (548)
...++..+...+...|++++|+..+++........++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2345667777777888888888777766542100111 3356666666666666 66
Q ss_pred HHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHH
Q 008925 153 EAWNVVYKMVAS----GIQ-PDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR-PN----ERTCGIIVSGYCKEGNME 222 (548)
Q Consensus 153 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~ 222 (548)
+|...+++..+. +.. ....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 666666554431 100 01234445555555555555555555544322100 01 123444444444445555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 008925 223 DAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKP-DVVTFSTIMDAWSSAGLMGKCQEIFDDM 301 (548)
Q Consensus 223 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (548)
+|...+++..... ...+..+ ...++..+...+...|++++|...++++
T Consensus 245 ~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 245 TASEYYKKTLLLA-------------------------------RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------------------------HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 5544444443210 0000000 0334555666666666666666666665
Q ss_pred HHcCC-CCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCh
Q 008925 302 VKAGI-EPD----IHVFSILAKGYVRAGEPQKAESILTSMRKY----GVHP-NVVMFTTVISGWCNAVKM 361 (548)
Q Consensus 302 ~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 361 (548)
.+... ..+ ..++..+...|...|++++|...+++..+. +..+ ...++..+...+...|+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 53210 011 345566666677777777777766665431 1111 133555566666655554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-14 Score=139.78 Aligned_cols=279 Identities=13% Similarity=0.092 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHH
Q 008925 136 RTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDA----VTYNTLARAYAQYGETYRAEQMLFEMQNN----Q-VRPNER 206 (548)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~ 206 (548)
..+..+...+...|++++|+..|+++++.. +.+. ..+..+...+...|++++|...+++..+. + ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 344455566667777777777777766653 2222 35566666666667777776666665432 0 011233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCC-CCCHHHHHHHHHHH
Q 008925 207 TCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGV-KPDVVTFSTIMDAW 285 (548)
Q Consensus 207 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~ 285 (548)
++..+...|...|++++|...++++.... .+.+. .....++..+...+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHH
Confidence 44455555555566666665555544310 00000 11123455555566
Q ss_pred HhCCC-----------------hhHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-C
Q 008925 286 SSAGL-----------------MGKCQEIFDDMVKA----GI-EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGV-H 342 (548)
Q Consensus 286 ~~~~~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 342 (548)
...|+ +++|...+++..+. +. +....++..+...|...|++++|...+++..+... .
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 66666 66666666665432 11 11234677778888888888888888887765310 0
Q ss_pred CC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----
Q 008925 343 PN----VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGI-NP----NLKTYETLLWGYGEAKQPWRAEELLQVMEEK---- 409 (548)
Q Consensus 343 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 409 (548)
++ ..++..++..|...|++++|...|+++++... .. ...++..++.+|...|++++|..+++++.+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 11 22677888888899999999999988876420 01 1456788888999999999999999888642
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 410 GVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 410 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
+..+. ..++..++.++...|++++|..+++++.+..+
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 11111 33677888999999999999999999876543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-11 Score=124.27 Aligned_cols=396 Identities=9% Similarity=0.011 Sum_probs=274.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC---hHHHHHH
Q 008925 45 FKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGK---PEESLKL 121 (548)
Q Consensus 45 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~ 121 (548)
..+.+..|+..+..+ +.|...|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.+. .+.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 334455566666654 679999999999999999999999999999987 56778889999999888888 9999999
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------
Q 008925 122 LQLMSQDKNVKPNDRTYNILVRAWCSKNSI--------EEAWNVVYKMVA-SGI-QP-DAVTYNTLARAYA--------- 181 (548)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~--------- 181 (548)
|++.......+|++..|...+....+.++. +...++|+..+. .|. .+ +...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999987632248999998888876665543 334577777664 355 44 3567877776543
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HH----------HhcCCHHHHHHHHHHHHhC--C----CC-----
Q 008925 182 QYGETYRAEQMLFEMQNNQVRPNERTCGIIVS---GY----------CKEGNMEDAMRFLYRMKEL--E----VH----- 237 (548)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~----------~~~g~~~~A~~~~~~~~~~--~----~~----- 237 (548)
..++.+.+..+|+.++......-..+|..... .. -...+++.|...+.++... + .+
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 23457788999999886422211223322111 10 0112344455555443211 1 11
Q ss_pred ------C-----C---HHHHHHHHHHHHcCCC-------hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHH-
Q 008925 238 ------P-----N---LVVFNSLIKGFLDIKD-------SDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQ- 295 (548)
Q Consensus 238 ------~-----~---~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~- 295 (548)
| + ...|...+..-...+. .+.+..++++..... +.....|...+..+...|+.+.|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 0 1345555544333221 223456788777764 347788888888888889999996
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHH
Q 008925 296 EIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGV---------HPN------------VVMFTTVISG 354 (548)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~p~------------~~~~~~l~~~ 354 (548)
.++++++... |.+...+..++...-+.|++++|..+|+.+++... .|+ ...|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9999999764 66777788889999999999999999999886310 132 2367777888
Q ss_pred HhccCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008925 355 WCNAVKMQRAMSIYEKMCEI-GINPNLKTYETLLWGYGEA-KQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAR 432 (548)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 432 (548)
..+.|+.+.|..+|.++.+. + ......|...+..-.+. ++++.|..+|+..++. .+.+...+...++.....|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 88889999999999999985 2 23345555444444454 4589999999999875 3345667778889889999999
Q ss_pred HHHHHHHHHHhccC
Q 008925 433 EAKRVLKSAEEDRQ 446 (548)
Q Consensus 433 ~A~~~~~~~~~~~~ 446 (548)
.|..+|+++.+..+
T Consensus 522 ~AR~lferal~~~~ 535 (679)
T 4e6h_A 522 QVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999886544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-13 Score=116.21 Aligned_cols=169 Identities=17% Similarity=0.151 Sum_probs=133.6
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008925 274 DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVIS 353 (548)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 353 (548)
+...|..+...+...|++++|+..|+++++.+ |.+..++..++.+|...|++++|...++.+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45677888888888888888888888888775 6677788888888888888888888888887753 234566777777
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008925 354 GWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLARE 433 (548)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 433 (548)
.+...++++.|...++++.+.. +.+...+..++.+|...|++++|++.|++.++.. +.+..++..++.++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 8888888888888888888765 5667788888888888888888888888888753 2345578888888888888888
Q ss_pred HHHHHHHHHhccC
Q 008925 434 AKRVLKSAEEDRQ 446 (548)
Q Consensus 434 A~~~~~~~~~~~~ 446 (548)
|++.++++.+.+|
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 8888888776543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-14 Score=132.91 Aligned_cols=278 Identities=12% Similarity=0.098 Sum_probs=167.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHH
Q 008925 137 TYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD----AVTYNTLARAYAQYGETYRAEQMLFEMQNN----QVR-PNERT 207 (548)
Q Consensus 137 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~ 207 (548)
.+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34445556666677777777776666643 222 244555666666666666666666654332 000 11234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Q 008925 208 CGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVK-PDVVTFSTIMDAWS 286 (548)
Q Consensus 208 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 286 (548)
+..+...+...|++++|...++++.+.. .+.+.. ....++..+...+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDIS-------------------------------RELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH-------------------------------HHhcCchHHHHHHHHHHHHHH
Confidence 4444555555555555555555543310 000000 00224445555555
Q ss_pred hCCC--------------------hhHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC
Q 008925 287 SAGL--------------------MGKCQEIFDDMVKA----GI-EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGV 341 (548)
Q Consensus 287 ~~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 341 (548)
..|+ +++|...+++.... +. +....++..+...+...|++++|...++++.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5555 66666666655432 10 11234677778888888888888888887764210
Q ss_pred -CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--
Q 008925 342 -HPN----VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGI-NPN----LKTYETLLWGYGEAKQPWRAEELLQVMEEK-- 409 (548)
Q Consensus 342 -~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 409 (548)
.++ ..++..++..+...|++++|...++++.+... .++ ..++..++..+...|++++|...++++.+.
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 011 23677788888889999999999988875310 112 456778888999999999999999888642
Q ss_pred --CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 410 --GVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 410 --~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
+-.+. ..++..++.++...|++++|...++++.+..+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 11111 33677888999999999999999999876544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-14 Score=139.56 Aligned_cols=278 Identities=12% Similarity=0.022 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----C-CCCC
Q 008925 99 TSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPND----RTYNILVRAWCSKNSIEEAWNVVYKMVAS----G-IQPD 169 (548)
Q Consensus 99 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~ 169 (548)
...+..+...+...|++++|+..|+++.+.. +.+. ..+..+...+...|++++|+..+++.++. + .+..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3455667888999999999999999998753 3333 47888999999999999999999998753 1 1223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 008925 170 AVTYNTLARAYAQYGETYRAEQMLFEMQNNQ-----VRPNERTCGIIVSGYCKEGN-----------------MEDAMRF 227 (548)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~ 227 (548)
..++..+...|...|++++|...++++.+.. ......++..+...|...|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 5678889999999999999999999876531 11123456667777777777 5666655
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 008925 228 LYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGV-KPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI 306 (548)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (548)
+++..+. .... +. .....++..+...+...|++++|...++++++...
T Consensus 206 ~~~al~~----------------------------~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 206 YQENLKL----------------------------MRDL---GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHH----------------------------HHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------HHHc---CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5554321 1000 10 11224566666777777777777777777664310
Q ss_pred -CCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC----C-CCHHHHHHHHHHHhccCChHHHHHHHHHHHHc--
Q 008925 307 -EPD----IHVFSILAKGYVRAGEPQKAESILTSMRKYGV----H-PNVVMFTTVISGWCNAVKMQRAMSIYEKMCEI-- 374 (548)
Q Consensus 307 -~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 374 (548)
.++ ..++..++..|...|++++|...++++.+... . ....++..+...+...|++++|..+++++++.
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 011 23667778888888888888888887765210 0 11456778888888899999999999888763
Q ss_pred --CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 375 --GIN-PNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 375 --~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
+.. ....++..+..+|...|++++|..++++..+.
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 101 11346778889999999999999999988763
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-13 Score=129.55 Aligned_cols=234 Identities=10% Similarity=-0.034 Sum_probs=170.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCC-C-----CHHHHH
Q 008925 211 IVSGYCKEGNMEDAMRFLYRMKEL----EVHP-NLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVK-P-----DVVTFS 279 (548)
Q Consensus 211 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 279 (548)
.+..+...|++++|+..|+++... +.++ ...++..+...|...|+++.|...+.+..+.... + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556667778888888888777653 1111 2356777777888888888888887776553111 1 135678
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CC-CCCHHHHH
Q 008925 280 TIMDAWSSAGLMGKCQEIFDDMVKAGI-EPD----IHVFSILAKGYVRAGEPQKAESILTSMRKY----GV-HPNVVMFT 349 (548)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~ 349 (548)
.+..+|...|++++|...++++++... .++ ..++..++.+|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888899999999999999998875310 112 247888999999999999999999998762 22 22355788
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 008925 350 TVISGWCNAVKMQRAMSIYEKMCEI----GINPNLKTYETLLWGYGEAKQ---PWRAEELLQVMEEKGVRPK-KSTIQLV 421 (548)
Q Consensus 350 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 421 (548)
.++..+...|++++|...++++++. +-+.....+..+...+...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 9999999999999999999998864 211222346778888999999 77777777665 33343 3377789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 422 ADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
+.++...|++++|..+++++.+....
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998755443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.4e-13 Score=113.00 Aligned_cols=165 Identities=15% Similarity=0.127 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 240 LVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKG 319 (548)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (548)
..+|..+...|...|++++|++.+++..+..+. +..++..+..++...|++++|...+..+.... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 334444444444444444444444444444321 34445555555555555555555555555443 3344455555555
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 320 YVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRA 399 (548)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 399 (548)
+...++++.|...+.++.+.. +.+...+..++..+...|++++|++.|+++++.. |.+..+|..++.+|...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 555555555555555555432 2234455555555555555555555555555543 44455555555556666666666
Q ss_pred HHHHHHHHH
Q 008925 400 EELLQVMEE 408 (548)
Q Consensus 400 ~~~~~~~~~ 408 (548)
+..|+++++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666655554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-13 Score=129.02 Aligned_cols=299 Identities=11% Similarity=0.032 Sum_probs=147.4
Q ss_pred HHccCCHHHHHHHHHHHHHC--CCCCCH--HHHHHHHHH--HHhcCChHHHH-----------HHHHHHHhcCCCCCHHH
Q 008925 39 LTRQKRFKSILSLISKVEKD--GMKPDS--ILFNAMINA--CSESGNVDEAM-----------KIFQKMKDSGCKPTTST 101 (548)
Q Consensus 39 ~~~~g~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~ 101 (548)
+.+.+++++|..+++++.+. ....|. ..|..++.. ....++++.+. +.++.+... +.+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 34678999999999888653 222333 333444332 12233344444 555555432 111111
Q ss_pred ------HHHHHHHHhccCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--C---
Q 008925 102 ------YNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPN----DRTYNILVRAWCSKNSIEEAWNVVYKMVASG--I--- 166 (548)
Q Consensus 102 ------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~--- 166 (548)
+......+...|++++|+..|++........++ ..++..++..+...|++++|+..+.+..+.- .
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 122455566677777777777776543111122 3456666666777777777777666655421 0
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008925 167 -QPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR-PN----ERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240 (548)
Q Consensus 167 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 240 (548)
+....+++.++.+|...|++++|...+++..+.... ++ ..++..++.+|...|++++|+..|++..+.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~------ 253 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV------ 253 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------
Confidence 001234555556666666666666665554432100 01 124444555555555555555555554431
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCCHHHHHH
Q 008925 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGV-KPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKA----GIEPDIHVFSI 315 (548)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 315 (548)
....+. +....++..+..++...|++++|...+++..+. +-+.....+..
T Consensus 254 -------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 308 (383)
T 3ulq_A 254 -------------------------FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF 308 (383)
T ss_dssp -------------------------HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -------------------------HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 000011 112344555555555555555555555555432 10111122344
Q ss_pred HHHHHHHcCC---HhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 316 LAKGYVRAGE---PQKAESILTSMRKYGVHPN-VVMFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 316 l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
+...+...|+ +++|+.++++.. ..|+ ...+..+...|...|++++|...|+++.+
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555555 455555554441 1222 22445566666666666666666666654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.6e-14 Score=130.73 Aligned_cols=278 Identities=10% Similarity=0.052 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC-CHH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPD----SILFNAMINACSESGNVDEAMKIFQKMKDS----GCKP-TTS 100 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~ 100 (548)
..+...+..+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +..+ ...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345556677777888888888888877753 223 346667777778888888888887776542 1111 234
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhCCC--------------------HHHHHH
Q 008925 101 TYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPN----DRTYNILVRAWCSKNS--------------------IEEAWN 156 (548)
Q Consensus 101 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~ 156 (548)
++..+...+...|++++|+..+++........++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 5666677777777777777777665432100111 2355556666666666 555555
Q ss_pred HHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008925 157 VVYKMVAS----GI-QPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR-PNERTCGIIVSGYCKEGNMEDAMRFLYR 230 (548)
Q Consensus 157 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 230 (548)
.+++.... +. +....++..+...+...|++++|...+++..+.... ++.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------------------------- 219 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK------------------------- 219 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH-------------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh-------------------------
Confidence 55554321 00 001223444444445555555555544443321000 000
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 008925 231 MKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVK-P----DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG 305 (548)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (548)
.....++..+...+...|++++|...++...+.... . ...++..+...+...|++++|...++++.+..
T Consensus 220 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 220 ------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp ------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 001124444555555555555555555544332100 0 13456667777777788888877777766431
Q ss_pred ----CC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 008925 306 ----IE-PDIHVFSILAKGYVRAGEPQKAESILTSMRKY 339 (548)
Q Consensus 306 ----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (548)
.+ ....++..+...|...|++++|...++++.+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 00 11346677778888888888888888887764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=134.50 Aligned_cols=215 Identities=10% Similarity=-0.018 Sum_probs=137.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 008925 44 RFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV-DEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLL 122 (548)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 122 (548)
++++++..++...... +.+...+..+...+...|++ ++|++.|+++++.. +.+..+|..+..+|...|++++|+..|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556666666555432 34566666666666677777 77777777766653 334566666777777777777777777
Q ss_pred HHhhhCCCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CC
Q 008925 123 QLMSQDKNVKPNDRTYNILVRAWCSK---------NSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQY--------GE 185 (548)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~ 185 (548)
++..+. .|+...+..+..++... |++++|+..|++.++.. +.+...|..+..+|... |+
T Consensus 161 ~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 161 SGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 766653 35556666666666666 67777777777766653 34566666666666666 66
Q ss_pred HHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHH
Q 008925 186 TYRAEQMLFEMQNNQVR--PNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKAL 263 (548)
Q Consensus 186 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 263 (548)
+++|+..|++..+..+. .+...+..+..+|...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777776664321 256666677777777777777777777766643 344556666666666666666666554
Q ss_pred HH
Q 008925 264 TL 265 (548)
Q Consensus 264 ~~ 265 (548)
..
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-13 Score=132.33 Aligned_cols=213 Identities=8% Similarity=-0.047 Sum_probs=164.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 008925 220 NMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDS-DGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIF 298 (548)
Q Consensus 220 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (548)
.+++++..+++..... +.+...+..+...+...|++ ++|.+.+++..+..+ .+...+..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556666666655532 44667777788888888888 888888888777653 35677888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHc---------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------CCh
Q 008925 299 DDMVKAGIEPDIHVFSILAKGYVRA---------GEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA--------VKM 361 (548)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~ 361 (548)
+++++. .|+...+..+..+|... |++++|+..++++.+.. +.+...|..++.+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 888876 45667788888888888 88888888888888753 23566788888888877 889
Q ss_pred HHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 008925 362 QRAMSIYEKMCEIGIN---PNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRV 437 (548)
Q Consensus 362 ~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 437 (548)
++|+..|+++++.. + .+...|..++.+|...|++++|...|+++.+. .|+ ...+..++.++...|++++|++.
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988864 4 47888888889999999999999999988875 344 45788888888888888888876
Q ss_pred HHH
Q 008925 438 LKS 440 (548)
Q Consensus 438 ~~~ 440 (548)
+.+
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-12 Score=118.04 Aligned_cols=218 Identities=6% Similarity=0.037 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008925 11 HEAHYIFNCLIEEGHRPTLITYTTLVAALTR-------QKRF-------KSILSLISKVEKDGMKPDSILFNAMINACSE 76 (548)
Q Consensus 11 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (548)
++|+.+|++++...+ .+...|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 577788888877643 366777777776653 4665 7777778777763123355677777777777
Q ss_pred cCChHHHHHHHHHHHhcCCCCC-HH-HHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH-hCCCHHH
Q 008925 77 SGNVDEAMKIFQKMKDSGCKPT-TS-TYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWC-SKNSIEE 153 (548)
Q Consensus 77 ~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 153 (548)
.|++++|..+|+++++. .|+ .. +|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|+.++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 77888888888777764 333 33 67777777777777777777777776642 233344433333222 2577777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008925 154 AWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQ-VRP--NERTCGIIVSGYCKEGNMEDAMRFLYR 230 (548)
Q Consensus 154 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 230 (548)
|..+|++.++.. +.+...|..++..+...|++++|..+|++..... ..| ....|..++....+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777766643 3356666666666777777777777777766642 232 345566666666666777777777766
Q ss_pred HHhC
Q 008925 231 MKEL 234 (548)
Q Consensus 231 ~~~~ 234 (548)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.5e-12 Score=119.73 Aligned_cols=230 Identities=9% Similarity=0.011 Sum_probs=166.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCC-----CC-CHHHH
Q 008925 210 IIVSGYCKEGNMEDAMRFLYRMKELEV-HP----NLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGV-----KP-DVVTF 278 (548)
Q Consensus 210 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~ 278 (548)
..+..+...|++++|+..|+++.+... .+ ...++..+...|...|+++.|...+.+..+... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345566777888888888888765311 11 235677778888888888888888877654311 11 24567
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHh-----CCCCCCHHHH
Q 008925 279 STIMDAWSSAGLMGKCQEIFDDMVKA----GIEP-DIHVFSILAKGYVRAGEPQKAESILTSMRK-----YGVHPNVVMF 348 (548)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 348 (548)
+.+..+|...|++++|...+.++++. +.++ ...++..++.+|...|++++|+..+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 78888999999999999999888753 1111 134678889999999999999999999876 43 2235678
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHH
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEIG----INPNLKTYETLLWGYGEAKQ---PWRAEELLQVMEEKGVRPK-KSTIQL 420 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~ 420 (548)
..++..+...|++++|...++++.+.. -+.....+..+...+...|+ +.+|+.++++. +..|+ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 889999999999999999999998742 12223456667777778888 77777777652 22333 336678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 008925 421 VADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 421 l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
++..+...|++++|...++++.+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999999753
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=127.54 Aligned_cols=56 Identities=13% Similarity=0.101 Sum_probs=25.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008925 388 WGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
..+...+.+.++...++..... .|+ ..++..++.++...|++++|.++++++.+..
T Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 252 GKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp ------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 3344455555666666655542 232 3356666777777777777777777766543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.8e-13 Score=122.40 Aligned_cols=205 Identities=15% Similarity=0.092 Sum_probs=163.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHc------C
Q 008925 204 NERTCGIIVSGYCKEGNMEDAMRFLYRMKEL-------EVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEF------G 270 (548)
Q Consensus 204 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 270 (548)
+..++..++..+...|++++|..+|+++.+. ..+....++..+...+...|++++|...++.+.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888899999999999999999999773 22344578888999999999999999999988764 2
Q ss_pred C-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC---
Q 008925 271 V-KPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKA------GIEP-DIHVFSILAKGYVRAGEPQKAESILTSMRKY--- 339 (548)
Q Consensus 271 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 339 (548)
. +....++..+...+...|++++|...++++++. +..| ...++..++..+...|++++|..+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223567888899999999999999999998864 2122 3457788899999999999999999998763
Q ss_pred ---CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHc-----------------------------------------
Q 008925 340 ---GVHPN-VVMFTTVISGWCNAVKMQRAMSIYEKMCEI----------------------------------------- 374 (548)
Q Consensus 340 ---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------------------------- 374 (548)
+..|+ ..++..++..+...|++++|..+++++.+.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 21232 346788899999999999999999999863
Q ss_pred -------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 375 -------GINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 375 -------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
..+.+..++..++.+|...|++++|..++++..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122346688899999999999999999998875
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-11 Score=117.01 Aligned_cols=233 Identities=8% Similarity=0.000 Sum_probs=111.6
Q ss_pred HHHHhccCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CC----CCHHHHHH
Q 008925 106 IKGYGNVGKPEESLKLLQLMSQDKNVKPN----DRTYNILVRAWCSKNSIEEAWNVVYKMVASG--IQ----PDAVTYNT 175 (548)
Q Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~----~~~~~~~~ 175 (548)
...+...|++++|+..|++........++ ..++..++..+...|+++.|+..+++..+.. .. ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 33444556666666666555432111111 2344555555555555555555555544320 00 01234444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCC
Q 008925 176 LARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVH-PNLVVFNSLIKGFLDIK 254 (548)
Q Consensus 176 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 254 (548)
++.+|...|++++|.+.+++..+.. ...+.+ ....++..+...|...|
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELA-------------------------------MDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH-------------------------------HHcCCHHHHHHHHHHHHHHHHHCC
Confidence 5555555555555555554443210 000000 01133444444455555
Q ss_pred ChhhHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCC
Q 008925 255 DSDGVDKALTLMEE-----FGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG----IEPDIHVFSILAKGYVRAGE 325 (548)
Q Consensus 255 ~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~ 325 (548)
++++|...+++..+ .. +....++..+..++...|++++|...+++..+.. -+.....+..+...+...++
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 55555555544433 21 1124555566666666666666666666665431 11122344455555555555
Q ss_pred ---HhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 326 ---PQKAESILTSMRKYGVHPN-VVMFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 326 ---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
+.+|+.++++.. ..|+ ...+..++..|...|++++|...|+++.+
T Consensus 316 ~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 316 ERKIHDLLSYFEKKN---LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555421 2222 23445666667777777777777776664
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.4e-12 Score=106.73 Aligned_cols=168 Identities=17% Similarity=0.138 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008925 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGW 355 (548)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 355 (548)
..+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456667777888888888888888887664 5567788888888888899999999888887753 33567788888888
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008925 356 CNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAK 435 (548)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 435 (548)
...|++++|.++++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 88899999999999988875 6677888888889999999999999999988753 334668888889999999999999
Q ss_pred HHHHHHHhccCC
Q 008925 436 RVLKSAEEDRQS 447 (548)
Q Consensus 436 ~~~~~~~~~~~~ 447 (548)
..++++.+..|.
T Consensus 165 ~~~~~~~~~~~~ 176 (186)
T 3as5_A 165 PHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHcCCC
Confidence 999987755443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-11 Score=114.51 Aligned_cols=272 Identities=11% Similarity=0.031 Sum_probs=128.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH----HHHHH
Q 008925 140 ILVRAWCSKNSIEEAWNVVYKMVASGIQPDA----VTYNTLARAYAQYGETYRAEQMLFEMQNNQVR-PNE----RTCGI 210 (548)
Q Consensus 140 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~ 210 (548)
.....+...|++++|...+++.+......+. .++..+...+...|++++|...+++....... .+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3344455566666666666666554311111 13344455555556666666655554432100 011 11333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHh
Q 008925 211 IVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVK--P-DVVTFSTIMDAWSS 287 (548)
Q Consensus 211 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~ 287 (548)
+...+...|++++|...+++..... .+.+.. | ....+..+...+..
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~~~la~~~~~ 147 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLI-------------------------------NEQHLEQLPMHEFLVRIRAQLLWA 147 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhccccCcHHHHHHHHHHHHHHH
Confidence 4444455555555555554443210 001111 1 12233445555555
Q ss_pred CCChhHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHhc
Q 008925 288 AGLMGKCQEIFDDMVKAGIE----PDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN-VVMFT-----TVISGWCN 357 (548)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~-----~l~~~~~~ 357 (548)
.|++++|...+++.+..... ....++..+...+...|++++|...+++.......++ ...+. ..+..+..
T Consensus 148 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T 1hz4_A 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 227 (373)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 56666666666555543111 0123455555666666666666666665543211111 01111 12233455
Q ss_pred cCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcC
Q 008925 358 AVKMQRAMSIYEKMCEIGINP---NLKTYETLLWGYGEAKQPWRAEELLQVMEEK----GVRPKK-STIQLVADSWRAIG 429 (548)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g 429 (548)
.|++++|...++++......+ ....+..+..++...|++++|...++++.+. +..++. ..+..++.++...|
T Consensus 228 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 307 (373)
T 1hz4_A 228 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 307 (373)
T ss_dssp TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhC
Confidence 666666666666655432111 1223455566666666666666666665421 111112 24445566666667
Q ss_pred CHHHHHHHHHHHH
Q 008925 430 LAREAKRVLKSAE 442 (548)
Q Consensus 430 ~~~~A~~~~~~~~ 442 (548)
+.++|...++++.
T Consensus 308 ~~~~A~~~l~~al 320 (373)
T 1hz4_A 308 RKSDAQRVLLDAL 320 (373)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777777766655
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.8e-11 Score=112.50 Aligned_cols=166 Identities=14% Similarity=0.014 Sum_probs=110.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCC----HH
Q 008925 101 TYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPND----RTYNILVRAWCSKNSIEEAWNVVYKMVASGI-QPD----AV 171 (548)
Q Consensus 101 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~ 171 (548)
........+...|++++|...+++...... ..+. ..++.+...+...|++++|...+++...... ..+ ..
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344556677789999999999999877531 1222 2566777888999999999999999875311 112 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CH
Q 008925 172 TYNTLARAYAQYGETYRAEQMLFEMQNN----QVR--P-NERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHP----NL 240 (548)
Q Consensus 172 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~ 240 (548)
++..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........ ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 4667888999999999999999987653 211 2 23455667778888888888888888876532111 12
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHH
Q 008925 241 VVFNSLIKGFLDIKDSDGVDKALTLME 267 (548)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 267 (548)
.++..+...+...|++++|...++...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444445555555555555555443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-12 Score=130.40 Aligned_cols=163 Identities=10% Similarity=0.024 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 275 VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISG 354 (548)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 354 (548)
..+++.+..++...|++++|+..|+++++.. +.+..++..++.+|.+.|++++|+..|+++++.. +-+...|..++.+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4455666666666666666666666666554 4445566666666666666666666666666542 1134456666666
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 008925 355 WCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLARE 433 (548)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 433 (548)
+...|++++|++.|+++++.. +.+...|..++.+|...|++++|+..|+++++. .|+ ...+..++.++...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHH
Confidence 666666666666666666654 445556666666666666666666666666653 343 3356666666666666666
Q ss_pred HHHHHHHHH
Q 008925 434 AKRVLKSAE 442 (548)
Q Consensus 434 A~~~~~~~~ 442 (548)
|.+.++++.
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-11 Score=108.07 Aligned_cols=201 Identities=12% Similarity=0.017 Sum_probs=151.6
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 008925 237 HPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSIL 316 (548)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (548)
+.++..+......+...|++++|...++...+..++++...+..+..++...|++++|+..++++++.+ +.+..++..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346678888888999999999999999998887654677777778888999999999999999998875 4566788889
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 008925 317 AKGYVRAGEPQKAESILTSMRKYGVHPNV-------VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINP--NLKTYETLL 387 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 387 (548)
+.+|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|+..|+++++.. +. +...+..++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 999999999999999999988753 2234 457778888888999999999999998863 33 356778888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 388 WGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
.+|...| ...++++...+ ..+...+.. ......|.+++|+..++++.+.+|..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYAS--EKAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 8876554 34455555442 223333332 23345577899999999988776543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9e-12 Score=127.03 Aligned_cols=166 Identities=9% Similarity=0.010 Sum_probs=120.3
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 239 NLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAK 318 (548)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (548)
+..+++.+...+.+.|++++|++.+++..+..+. +...+..+..++.+.|++++|+..|+++++.+ +.+..+|..++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3456677777777777777777777777665422 46677777777777777777777777777765 556677777777
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWR 398 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (548)
+|...|++++|++.|+++++.. +-+...|..++.+|...|++++|++.|+++++.. +.+...+..++.++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 8888888888888887777653 2245677777888888888888888888887765 5566777778888888888888
Q ss_pred HHHHHHHHHH
Q 008925 399 AEELLQVMEE 408 (548)
Q Consensus 399 A~~~~~~~~~ 408 (548)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777777653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-11 Score=105.26 Aligned_cols=100 Identities=9% Similarity=-0.105 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008925 169 DAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIK 248 (548)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (548)
|+..+...+..+...|++++|...|++..+....++...+..++.++...|++++|+..|++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3445555555555555555555555555554332344444445555555555555555555555432 223344455555
Q ss_pred HHHcCCChhhHHHHHHHHHHc
Q 008925 249 GFLDIKDSDGVDKALTLMEEF 269 (548)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~ 269 (548)
.+...|++++|...++...+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~ 105 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA 105 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH
Confidence 555555555555555554443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4.4e-11 Score=101.02 Aligned_cols=163 Identities=12% Similarity=0.082 Sum_probs=104.0
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 242 VFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYV 321 (548)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (548)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444455555555555555555544432 2245556666666666666777776666666553 445666666777777
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 322 RAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEE 401 (548)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (548)
..|++++|...++++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777766542 2345566667777777777777777777777654 4556677777777777777777777
Q ss_pred HHHHHHH
Q 008925 402 LLQVMEE 408 (548)
Q Consensus 402 ~~~~~~~ 408 (548)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.35 E-value=7.6e-12 Score=113.85 Aligned_cols=230 Identities=12% Similarity=0.067 Sum_probs=163.2
Q ss_pred ccccCChhhHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC------CC-CCCHHHHHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEE-------GHRPTLITYTTLVAALTRQKRFKSILSLISKVEKD------GM-KPDSILFNA 69 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 69 (548)
....|++++|+..|+++++. ..+....++..++..+...|++++|+..++++.+. +- +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 35678999999999988872 11224568899999999999999999999998754 21 223568889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhC------CCCCCCHH
Q 008925 70 MINACSESGNVDEAMKIFQKMKDS------G-CKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQD------KNVKPNDR 136 (548)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~ 136 (548)
+...|...|++++|...|+++... . .+....++..+...+...|++++|+..+++.... ...+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999998764 1 1223567888999999999999999999988764 11122356
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCC
Q 008925 137 TYNILVRAWCSKNSIEEAWNVVYKMVAS-------GIQP-DAVTYNTLARAYAQYGET------YRAEQMLFEMQNNQVR 202 (548)
Q Consensus 137 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~ 202 (548)
++..+..++...|++++|...++++.+. ...+ ....+..+...+...+.. ..+...++..... .+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CH
Confidence 7889999999999999999999998763 1122 233344444444433332 2222222222111 12
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 203 PNERTCGIIVSGYCKEGNMEDAMRFLYRMKEL 234 (548)
Q Consensus 203 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 234 (548)
....++..+..+|...|++++|..+|+++.+.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23567888999999999999999999998763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-11 Score=112.29 Aligned_cols=229 Identities=12% Similarity=0.059 Sum_probs=157.8
Q ss_pred HhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHc------CCCC-CHHHHHHH
Q 008925 216 CKEGNMEDAMRFLYRMKEL-------EVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEF------GVKP-DVVTFSTI 281 (548)
Q Consensus 216 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l 281 (548)
...|++++|+.+|++..+. ..+....++..+...+...|++++|...++.+.+. +..| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456766676666666542 22334578889999999999999999999987764 2222 35678889
Q ss_pred HHHHHhCCChhHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC------CCCC-CHHH
Q 008925 282 MDAWSSAGLMGKCQEIFDDMVKA------G-IEPDIHVFSILAKGYVRAGEPQKAESILTSMRKY------GVHP-NVVM 347 (548)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~ 347 (548)
..++...|++++|...+.++++. . .+....++..++..|...|++++|..+++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998864 1 1223567888999999999999999999998764 1123 2457
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH--H-CC-CCCC-
Q 008925 348 FTTVISGWCNAVKMQRAMSIYEKMCEI-------GINP-NLKTYETLLWGYGEAKQPWRAEELLQVME--E-KG-VRPK- 414 (548)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~-~~p~- 414 (548)
+..++..+...|++++|..+++++.+. ...+ ....+..+...+...+....+..+.+... + .+ ..|+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999999864 1122 22344444444444444333333222111 1 11 1122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008925 415 KSTIQLVADSWRAIGLAREAKRVLKSAEED 444 (548)
Q Consensus 415 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (548)
..++..++.++...|++++|..+++++.+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 337788999999999999999999998754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=8e-11 Score=107.58 Aligned_cols=194 Identities=11% Similarity=0.024 Sum_probs=123.1
Q ss_pred HHHcCCChhhHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CCC--HHHHHHHHH
Q 008925 249 GFLDIKDSDGVDKALTLMEEF----GVKPD-VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI---EPD--IHVFSILAK 318 (548)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~ 318 (548)
.|...|++++|...+.+..+. +.++. ..+++.+..+|...|++++|+..++++++... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666554432 21111 34666777777777777777777777764310 111 346777888
Q ss_pred HHHHc-CCHhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH------HHHHHH
Q 008925 319 GYVRA-GEPQKAESILTSMRKYGVH-PN----VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL------KTYETL 386 (548)
Q Consensus 319 ~~~~~-g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l 386 (548)
+|... |++++|+..|++..+.... .+ ..++..++..+...|++++|+..|+++.+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 8888888888887753110 01 346778888888889999999999888875322111 156777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHH--HcCCHHHHHHHHHHHHhc
Q 008925 387 LWGYGEAKQPWRAEELLQVMEEKGVRPKKS------TIQLVADSWR--AIGLAREAKRVLKSAEED 444 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 444 (548)
+.++...|++++|+..|++.++. .|+.. .+..++.++. ..+++++|++.++++...
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 88888889999999988888753 34321 2344555554 346788888888765433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.27 E-value=9.3e-10 Score=98.32 Aligned_cols=184 Identities=10% Similarity=0.032 Sum_probs=86.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 008925 259 VDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI-EPDIHVFSILAKGYVRAGEPQKAESILTSMR 337 (548)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 337 (548)
++..+++..+.+ .++..++..+..++...|++++|++++.+.+..+. ..+...+..++..+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444443332 23333344555555555566666555555544431 1234455555555556666666666665555
Q ss_pred hCCCCC-----CHHHHHHHHHHHh--ccC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 338 KYGVHP-----NVVMFTTVISGWC--NAV--KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 338 ~~~~~p-----~~~~~~~l~~~~~--~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
+. .| +..+...++.++. ..| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 42 33 1333333443321 122 555666666665443 33322222333355555666666666554432
Q ss_pred C-----CC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 409 K-----GV---RPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 409 ~-----~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
. .. .|+ +.++..++.+....|+ +|.++++++.+..|..|
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 1 00 122 3344455444444554 55556655555554444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-10 Score=103.89 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHhccCChHHH
Q 008925 44 RFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDS----GCKPT-TSTYNTLIKGYGNVGKPEES 118 (548)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A 118 (548)
++++|...|++. +..|...|++++|...|++.... |-++. ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 23455566666666666665442 11111 23455555555555566666
Q ss_pred HHHHHHhh
Q 008925 119 LKLLQLMS 126 (548)
Q Consensus 119 ~~~~~~~~ 126 (548)
+..|++..
T Consensus 97 ~~~~~~Al 104 (292)
T 1qqe_A 97 VDSLENAI 104 (292)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.1e-10 Score=101.08 Aligned_cols=172 Identities=11% Similarity=0.016 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-CCC-HHHHHH
Q 008925 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPD---IHVFSILAKGYVRAGEPQKAESILTSMRKYGV-HPN-VVMFTT 350 (548)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~ 350 (548)
..+..+...+...|++++|...|+.+++.. +.+ ..++..++.+|.+.|++++|+..|+++.+... .|. ...+..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 333344444444455555555555544432 222 33444444455555555555555555444211 011 223334
Q ss_pred HHHHHhc--------cCChHHHHHHHHHHHHcCCCCCHHH-----------------HHHHHHHHHhcCChHHHHHHHHH
Q 008925 351 VISGWCN--------AVKMQRAMSIYEKMCEIGINPNLKT-----------------YETLLWGYGEAKQPWRAEELLQV 405 (548)
Q Consensus 351 l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~ 405 (548)
++.++.. .|++++|+..|+++++.. |.+... +..++..|...|++++|+..|++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444 455555555555555432 112111 36678889999999999999999
Q ss_pred HHHCCCC-C-CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhccCCCC
Q 008925 406 MEEKGVR-P-KKSTIQLVADSWRAI----------GLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 406 ~~~~~~~-p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~ 449 (548)
+++.... + ....+..++.++... |++++|+..++++.+..|..+
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 9874211 1 234777888888866 899999999999988776554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-09 Score=94.58 Aligned_cols=185 Identities=9% Similarity=-0.036 Sum_probs=116.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 008925 224 AMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGV-KPDVVTFSTIMDAWSSAGLMGKCQEIFDDMV 302 (548)
Q Consensus 224 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (548)
|+..|++..+.+ +++..++..+..++...|++++|.+++...+..+. .-+...+...+..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666543 34555555667777777777777777777665543 1245666677777777888888888887776
Q ss_pred HcCCCC-----CHHHHHHHHHH--HHHcC--CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 303 KAGIEP-----DIHVFSILAKG--YVRAG--EPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 303 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
+. .| +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65 45 24455555544 33334 777888888887654 34433333334467777888888888876654
Q ss_pred c-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008925 374 I-----G----INPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKST 417 (548)
Q Consensus 374 ~-----~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 417 (548)
. . -+.|+.++..++......|+ +|.++++++.+. .|+...
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~ 288 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAF 288 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChH
Confidence 2 0 03456666666666666676 677788877763 465553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-10 Score=98.66 Aligned_cols=128 Identities=16% Similarity=0.014 Sum_probs=88.3
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008925 316 LAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQ 395 (548)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (548)
++.+|.+.|++++|+..|+++++.. +.+...+..++.++...|++++|+..|+++++.. |.+..++..++.+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 7778888888888888888887753 2356677888888888888888888888888875 5667778888877765543
Q ss_pred --hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 396 --PWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 396 --~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
...+...++.... ..|....+...+.++...|++++|+..++++.+..|.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3344555554432 1222224445566777788888888888888776654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.23 E-value=8e-10 Score=87.59 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYG 391 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (548)
.+..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555566666666666666666665542 2244555666666666666666666666666554 445556666666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008925 392 EAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
..|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 6666666666666666532 2234456666666666777777777766665443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-08 Score=92.56 Aligned_cols=221 Identities=9% Similarity=-0.055 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC--ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhC---CCh
Q 008925 221 MEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIK--DSDGVDKALTLMEEFGVKPDVVTFSTIMDAW----SSA---GLM 291 (548)
Q Consensus 221 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 291 (548)
.++|+.++++++..+ |.+..+|+.-...+...+ ++++++..++.+...+++ +..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 356777777776654 445566777777777666 777777777777776544 444555544444 444 678
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh--HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC------hHH
Q 008925 292 GKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQ--KAESILTSMRKYGVHPNVVMFTTVISGWCNAVK------MQR 363 (548)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 363 (548)
++++.+++.+++.+ +.+..+|+.-..++.+.|.++ ++++.++++.+.++ -|...|+.-...+...+. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHH
Confidence 88888888888876 677888888888888888888 88888888887653 367778777777777776 889
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008925 364 AMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWR-AEELLQVMEEKG-V-RPKKSTIQLVADSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (548)
+++.+++++... +-|...|+.+...+.+.|+... +..+.+++.+.+ . ..+...+..+++++...|+.++|+++++.
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999999876 6788889888888888887555 445666655432 1 23556788888999999999999999999
Q ss_pred HHh-ccC
Q 008925 441 AEE-DRQ 446 (548)
Q Consensus 441 ~~~-~~~ 446 (548)
+.+ .+|
T Consensus 284 l~~~~Dp 290 (306)
T 3dra_A 284 LKSKYNP 290 (306)
T ss_dssp HHHTTCG
T ss_pred HHhccCh
Confidence 874 454
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-10 Score=119.86 Aligned_cols=173 Identities=10% Similarity=-0.076 Sum_probs=142.5
Q ss_pred HcCCChhhHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008925 251 LDIKDSDGVDKALTLME--------EFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR 322 (548)
Q Consensus 251 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (548)
...|++++|.+.++... +.. +.+...+..+..++...|++++|+..++++++.+ +.+...+..++.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77889999999999887 443 3356778888889999999999999999999875 6678899999999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008925 323 AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEEL 402 (548)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 402 (548)
.|++++|+..|+++.+.. +.+...+..+..++...|++++ ++.|+++++.+ +.+...|..++.++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998864 2356788899999999999999 99999999876 66788899999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHHcCC
Q 008925 403 LQVMEEKGVRPKK-STIQLVADSWRAIGL 430 (548)
Q Consensus 403 ~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 430 (548)
|+++.+. .|+. ..+..++.++...|.
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9988763 5764 477778888766555
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-08 Score=99.66 Aligned_cols=376 Identities=8% Similarity=-0.068 Sum_probs=226.3
Q ss_pred ccC-ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHH
Q 008925 6 GKG-KPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGN-VDEA 83 (548)
Q Consensus 6 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 83 (548)
+.| +.+.|..+|+.++.. -|. |+++.+..+|++.+.. .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 488888888888764 233 8999999999999874 5799999999988877764 4667
Q ss_pred HHHHHHHHhc-CC-CCCHHHHHHHHHHHhc----cCChHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHhCCCHHHHH
Q 008925 84 MKIFQKMKDS-GC-KPTTSTYNTLIKGYGN----VGKPEESLKLLQLMSQDKNVKPN--DRTYNILVRAWCSKNSIEEAW 155 (548)
Q Consensus 84 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~ 155 (548)
..+|+.++.. |. +.+...|...+..+.. .++.+.+.++|++.... |+. ...|......- .......+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~~~~~lw~~Y~~fE-~~~~~~~~~ 143 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMGSLSELWKDFENFE-LELNKITGK 143 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCTTHHHHHHHHHHHH-HHHCHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhhhHHHHHHHHHHHH-HHhccccHH
Confidence 8889888764 43 3467888888887653 45788899999999863 222 12222222111 111111222
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--C-----CHHHHHHHH
Q 008925 156 NVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKE--G-----NMEDAMRFL 228 (548)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g-----~~~~A~~~~ 228 (548)
.++.+. .+.+..|..+++.+...-...+...|...+..-... | ..+.+..+|
T Consensus 144 ~~~~~~---------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~y 202 (493)
T 2uy1_A 144 KIVGDT---------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIH 202 (493)
T ss_dssp HHHHHH---------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHH---------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHH
Confidence 222111 112333333333332210001223444433332211 0 034566778
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC---
Q 008925 229 YRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG--- 305 (548)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 305 (548)
++++... +.+...|...+..+...|+.+.|..+++..... +. +...+.. |......++. ++.+.+.-
T Consensus 203 e~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~-~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~ 272 (493)
T 2uy1_A 203 NYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD-GMFLSLY----YGLVMDEEAV---YGDLKRKYSMG 272 (493)
T ss_dssp HHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-SSHHHHH----HHHHTTCTHH---HHHHHHHTC--
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-cHHHHHH----HHhhcchhHH---HHHHHHHHHhh
Confidence 7777643 555777877777778888888888888888776 22 3222221 2221111221 22222110
Q ss_pred ------C---CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHHcC
Q 008925 306 ------I---EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN-AVKMQRAMSIYEKMCEIG 375 (548)
Q Consensus 306 ------~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~ 375 (548)
. .....+|...+..+.+.++.+.|..+|+.+ .. ...+...|...+..-.. .++.+.|..+|+.+++..
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 0 011245667777777788899999999999 32 12344444432222222 236999999999999863
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 376 INPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
+.++..+...+......|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.
T Consensus 351 -~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 351 -PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4456666777787888999999999999872 246688888888888899999999998876
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-08 Score=97.82 Aligned_cols=358 Identities=8% Similarity=-0.051 Sum_probs=216.3
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHH----hcCCh
Q 008925 8 GKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKR-FKSILSLISKVEKD-GM-KPDSILFNAMINACS----ESGNV 80 (548)
Q Consensus 8 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~ 80 (548)
|+++.+..+|+.++.. .|+...|...+....+.++ .+....+|+.+... |. +.+...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7899999999999984 4799999988888777663 46678888887764 43 346788988887764 34678
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008925 81 DEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYK 160 (548)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 160 (548)
+.+.++|++++......-...|......-.. .....+.+++.+.. +.+..|..+++.
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~~~----------------------~~y~~ar~~y~~ 162 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGDTL----------------------PIFQSSFQRYQQ 162 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHHHH----------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHHHh----------------------HHHHHHHHHHHH
Confidence 8999999999984211112233333222111 11222333322211 122223333333
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc--CC-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 161 MVASGIQPDAVTYNTLARAYAQY--GE-----TYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKE 233 (548)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~--g~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 233 (548)
+...--..+...|...+..-... +- ...+..+|++++...+ .+...|...+..+.+.|+.+.|..++++++.
T Consensus 163 ~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 163 IQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22110001233444444332211 10 3446677777776533 3567777777777788888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcC------------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 008925 234 LEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFG------------VKPDVVTFSTIMDAWSSAGLMGKCQEIFDDM 301 (548)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (548)
. |.+...|...... .. .++. ++.+.+.- .......|...+....+.+..+.|..+|..+
T Consensus 242 ~--P~~~~l~~~y~~~-~e---~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 242 M--SDGMFLSLYYGLV-MD---EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp H--CCSSHHHHHHHHH-TT---CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C--CCcHHHHHHHHhh-cc---hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 6 4443333322111 11 1111 22222110 0111245666677776778899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 008925 302 VKAGIEPDIHVFSILAKGYVRAG-EPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL 380 (548)
Q Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (548)
+.. +.+..+|...+..-...+ +++.|..+|+...+.- +.+...+...+......|+.+.|..+|+++. ...
T Consensus 313 -~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~ 384 (493)
T 2uy1_A 313 -GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTS 384 (493)
T ss_dssp -TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBH
T ss_pred -hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHH
Confidence 332 235555554443333334 6999999999998752 2234556667777788899999999999972 356
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 381 KTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
..|...+..-...|+.+.+..+++++.+
T Consensus 385 ~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 385 RMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7788888877888999999998888863
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-09 Score=98.38 Aligned_cols=59 Identities=14% Similarity=0.037 Sum_probs=29.7
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHH
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEIGINP---NLKTYETLLWGYGEA----------KQPWRAEELLQVMEE 408 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~ 408 (548)
..++..|...|++++|+..|+++++.. |. ....+..++.+|... |++++|+..|+++++
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAY-PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 344455555555555555555555432 11 123444555555443 555566666665554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-09 Score=85.44 Aligned_cols=130 Identities=13% Similarity=0.153 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008925 277 TFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWC 356 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 356 (548)
.+..+...+...|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++++...+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566777778888888888888887764 5567777888888888888888888888887753 335667778888888
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 357 NAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
..|++++|.++++++.+.. +.+...+..++..+...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888888764 556777888888888888888888888888764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1e-09 Score=94.56 Aligned_cols=189 Identities=10% Similarity=0.038 Sum_probs=115.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 208 CGIIVSGYCKEGNMEDAMRFLYRMKELEVHPN-LVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWS 286 (548)
Q Consensus 208 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 286 (548)
+...+..+...|++++|+..|++++... |+ ...|... ..... ..........+..++.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDKN--------------SEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCTT--------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcch--------------hhhhHHHHHHHHHHHH
Confidence 3344555667777777777777776642 32 2222210 00000 0011223344777788
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC--hHHH
Q 008925 287 SAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVK--MQRA 364 (548)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A 364 (548)
..|++++|+..|+++++.. |.+...+..++.++...|++++|+..|+++++.. +.+..++..++..|...|+ .+.+
T Consensus 66 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 8888888888888888775 5667788888888888888888888888887753 2346677777777755543 3445
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008925 365 MSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVAD 423 (548)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 423 (548)
...++++.. .+|....+..+..++...|++++|+..|+++++ +.|+......+..
T Consensus 144 ~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 144 ETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 555665542 122233444556667777888888888888876 3577665544443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.3e-09 Score=89.80 Aligned_cols=175 Identities=13% Similarity=0.039 Sum_probs=125.5
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHH
Q 008925 11 HEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESG----NVDEAMKI 86 (548)
Q Consensus 11 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 86 (548)
.+|+..|+.+.+.| ++.++..|...+...+++++|++.|++..+.| ++..+..|...|.. + ++++|++.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35777888887753 67778888888888888888888888887764 56677777777776 6 78888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhhhCCCCCCC---HHHHHHHHHHHHh----CCCHHHHH
Q 008925 87 FQKMKDSGCKPTTSTYNTLIKGYGN----VGKPEESLKLLQLMSQDKNVKPN---DRTYNILVRAWCS----KNSIEEAW 155 (548)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~a~ 155 (548)
|++..+.| ++.++..|...|.. .+++++|+..|++.... .++ ...+..|...|.. .+++++|+
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 88887754 66677777777776 67888888888887654 222 6677777777777 66778888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 008925 156 NVVYKMVASGIQPDAVTYNTLARAYAQY-G-----ETYRAEQMLFEMQNNQ 200 (548)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 200 (548)
.+|++..+. +.+...+..|..+|... | ++++|...|+...+.|
T Consensus 150 ~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 150 EYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 888777765 23444566666666543 2 6777777777666554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.7e-08 Score=89.91 Aligned_cols=217 Identities=9% Similarity=-0.042 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 008925 152 EEAWNVVYKMVASGIQPDAVTYNTLARAYAQYG--ETYRAEQMLFEMQNNQVRPNERTCGIIVSGY----CKE---GNME 222 (548)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~~ 222 (548)
++|+..+++++..+ +.+...|+.-...+...| +++++++.++.++...++ +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45666666655543 333445555555555555 566666666665554333 444444433333 333 4566
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh--hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC------hhHH
Q 008925 223 DAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSD--GVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGL------MGKC 294 (548)
Q Consensus 223 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a 294 (548)
+++.+++++.+.. +.+..+|+.-.-.+...+.++ ++.+.++.+.+..+. |...|+.....+...+. ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 6666666666543 455566665555555555555 566666666555433 45555555555555544 5566
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 008925 295 QEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQK-AESILTSMRKYG--VHPNVVMFTTVISGWCNAVKMQRAMSIYEKM 371 (548)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 371 (548)
++.+..++..+ +.|..+|+.+...+.+.|+... +..+..++.+.+ -..+...+..++..+.+.|+.++|+++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 66666666554 4555666666666655555332 333444433321 0123445555555555555555566665555
Q ss_pred HH
Q 008925 372 CE 373 (548)
Q Consensus 372 ~~ 373 (548)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.4e-10 Score=116.05 Aligned_cols=153 Identities=14% Similarity=-0.023 Sum_probs=75.3
Q ss_pred ccCChhhHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008925 6 GKGKPHEAHYIFNCLI--------EEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSES 77 (548)
Q Consensus 6 ~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (548)
..|++++|++.|++++ +.. +.+...+..++.++.+.|++++|++.|+++.+.. +.+...|..+..++...
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 3455555555555555 322 1233445555555555555555555555555432 33444555555555555
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 008925 78 GNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNV 157 (548)
Q Consensus 78 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 157 (548)
|++++|+..|+++.+.. +.+...+..+..++...|++++ +..|++..+.. +.+...+..+..++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555442 2234445555555555555555 55555544431 23344455555555555555555555
Q ss_pred HHHHHHC
Q 008925 158 VYKMVAS 164 (548)
Q Consensus 158 ~~~~~~~ 164 (548)
|+++++.
T Consensus 557 ~~~al~l 563 (681)
T 2pzi_A 557 LDEVPPT 563 (681)
T ss_dssp HHTSCTT
T ss_pred HHhhccc
Confidence 5554443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.6e-10 Score=93.37 Aligned_cols=161 Identities=10% Similarity=0.026 Sum_probs=121.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-Hh
Q 008925 278 FSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISG-WC 356 (548)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 356 (548)
+......+...|++++|...++++++.. |.+...+..+..++...|++++|+..++++.... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4456667788899999999998888765 5677888888899999999999999998887653 344333322212 12
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 008925 357 NAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP-KKSTIQLVADSWRAIGLAREAK 435 (548)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 435 (548)
..+...+|+..++++++.. |.+...+..+..++...|++++|...|+++++....+ +...+..++.++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2233445788899998875 5578889999999999999999999999998754222 2457888899999999999999
Q ss_pred HHHHHHH
Q 008925 436 RVLKSAE 442 (548)
Q Consensus 436 ~~~~~~~ 442 (548)
..++++.
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=7e-09 Score=89.55 Aligned_cols=176 Identities=12% Similarity=0.020 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC----ChHHHHHHH
Q 008925 47 SILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVG----KPEESLKLL 122 (548)
Q Consensus 47 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 122 (548)
+|++.|++..+.| ++..+..|...|...+++++|+..|++..+.| ++..+..|...|.. + ++++|+..|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777777654 66777788888888888888888888887764 56777777777777 6 788888888
Q ss_pred HHhhhCCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 008925 123 QLMSQDKNVKPNDRTYNILVRAWCS----KNSIEEAWNVVYKMVASGIQ-PDAVTYNTLARAYAQ----YGETYRAEQML 193 (548)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~ 193 (548)
++.... .+...+..|...|.. .+++++|+.+|++..+.+.. .....+..|...|.. .+++++|...|
T Consensus 77 ~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 887653 466777777777776 77888888888888776511 016677777777777 67788888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 008925 194 FEMQNNQVRPNERTCGIIVSGYCKE-G-----NMEDAMRFLYRMKELE 235 (548)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 235 (548)
++..+. ..+...+..+..+|... | ++++|..+|++..+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 877765 22445666666666543 2 7788888887777655
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-09 Score=98.92 Aligned_cols=165 Identities=8% Similarity=-0.010 Sum_probs=137.6
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHH-HH
Q 008925 272 KPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMF-TT 350 (548)
Q Consensus 272 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~ 350 (548)
+.+...+..+...+...|++++|...|+++++.. |.+...+..++..+...|++++|...++++... .|+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3345667778888899999999999999999886 667889999999999999999999999998775 3555433 33
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHH
Q 008925 351 VISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK---KSTIQLVADSWRA 427 (548)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~ 427 (548)
....+...++.++|+..++++++.. |.+...+..++.++...|++++|+..|+++++. .|+ ...+..++.++..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence 3344667788889999999999876 778899999999999999999999999999975 344 4588899999999
Q ss_pred cCCHHHHHHHHHHHH
Q 008925 428 IGLAREAKRVLKSAE 442 (548)
Q Consensus 428 ~g~~~~A~~~~~~~~ 442 (548)
.|+.++|...+++..
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 999999999998864
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=93.24 Aligned_cols=141 Identities=9% Similarity=-0.029 Sum_probs=84.0
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 008925 284 AWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQR 363 (548)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 363 (548)
.+...|++++|+..++...... +.+...+..+...|.+.|++++|+..|+++++.. +-+..+|..++.+|...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 3444556666666666665432 2223345566666777777777777777766643 2245566667777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 008925 364 AMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEEL-LQVMEEKGVRPK-KSTIQLVADSWRAIG 429 (548)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~-~~~~~~l~~~~~~~g 429 (548)
|+..|+++++.. |.+...+..++..|.+.|++++|.+. ++++++. .|+ ..++.....++...|
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 777777777654 44566667777777777776655543 4666553 343 335555555555555
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-09 Score=107.75 Aligned_cols=154 Identities=10% Similarity=-0.034 Sum_probs=112.8
Q ss_pred CCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 008925 253 IKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESI 332 (548)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (548)
.|++++|...+++..+..+ .+...+..+...+...|++++|...++++++.. +.+...+..++.+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4678888888888877643 357788888888889999999999999988875 56678888888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHC
Q 008925 333 LTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEA---KQPWRAEELLQVMEEK 409 (548)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 409 (548)
++++.+.. +.+...+..+..++...|++++|.+.|+++.+.. +.+...+..++.++... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99888753 2356788888888999999999999999988875 55678888888888888 8999999999988875
Q ss_pred C
Q 008925 410 G 410 (548)
Q Consensus 410 ~ 410 (548)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5.1e-10 Score=90.68 Aligned_cols=141 Identities=7% Similarity=-0.038 Sum_probs=92.1
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEA 83 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 83 (548)
+...|++++|+..++.+....+ .+...+..++..|.+.|++++|++.|+++++.. |.+..+|..+..+|...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 4556777777777777665422 133456667777777777777777777777663 44667777777777777777777
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHH-HHHhhhCCCCCCCHHHHHHHHHHHHhCC
Q 008925 84 MKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKL-LQLMSQDKNVKPNDRTYNILVRAWCSKN 149 (548)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (548)
+..|++.++.. +-+..++..+..+|.+.|+.++|.+. +++..+.. |.+...|......+...|
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 77777777653 33566777777777777777655543 45555531 344555665555555554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-08 Score=88.98 Aligned_cols=190 Identities=11% Similarity=0.020 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH---HHH
Q 008925 239 NLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPD--VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDI---HVF 313 (548)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 313 (548)
+...+..++..+...|++++|...|+.+.+..+... ...+..++.++...|++++|+..|+++++.. |.+. .++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 344566667777778888888888888776543211 3456667777888888888888888877663 2222 244
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHH------------
Q 008925 314 SILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLK------------ 381 (548)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------ 381 (548)
..++.++...+.. .+ ..|..+...+...|++++|+..|+++++.. |.+..
T Consensus 82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHH
Confidence 5555555442100 00 001111112223444555555555554431 11111
Q ss_pred -----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 382 -----TYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK----STIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 382 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
....++..|...|++++|+..|+++++. .|+. ..+..++.++.+.|++++|++.++.+....|...
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 1135677888999999999999999874 3442 4688899999999999999999999886665543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-09 Score=90.39 Aligned_cols=158 Identities=14% Similarity=0.065 Sum_probs=75.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhCC
Q 008925 211 IVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDA-WSSAG 289 (548)
Q Consensus 211 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 289 (548)
....+...|++++|+..|+++.+.. |.+...+..+...+...|++++|...++.+.+..+ ++......... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhc
Confidence 3444445555555555555544322 23344455555555555555555555554443322 22222111111 11111
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHH
Q 008925 290 LMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRAMSIY 368 (548)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 368 (548)
....|...++++++.. |.+...+..+..++...|++++|...|+++.+....+ +...+..++..+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223455555555543 3445555666666666666666666666665543211 1335555555566666666666666
Q ss_pred HHHH
Q 008925 369 EKMC 372 (548)
Q Consensus 369 ~~~~ 372 (548)
++.+
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-09 Score=106.01 Aligned_cols=154 Identities=10% Similarity=-0.022 Sum_probs=119.0
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008925 7 KGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKI 86 (548)
Q Consensus 7 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 86 (548)
.|++++|+..|+++++..+. +...+..++..+...|++++|++.|++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 57899999999999887543 67889999999999999999999999999874 55688999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHH
Q 008925 87 FQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSK---NSIEEAWNVVYKMVA 163 (548)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 163 (548)
|++..+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+..++... |+.++|.+.+++.++
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99998874 4467889999999999999999999999988753 45678888999999999 999999999999988
Q ss_pred CC
Q 008925 164 SG 165 (548)
Q Consensus 164 ~~ 165 (548)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 75
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.06 E-value=5e-09 Score=96.40 Aligned_cols=158 Identities=11% Similarity=-0.022 Sum_probs=68.3
Q ss_pred HHHcCCChhhHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC--C-CCC--HHHHHHHHH
Q 008925 249 GFLDIKDSDGVDKALTLMEEFGV---KP--DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG--I-EPD--IHVFSILAK 318 (548)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~--~~~~~~l~~ 318 (548)
.|...|++++|...+.+..+... .+ ...++..+..+|...|++++|+..|++.++.. . .+. ..++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555666666665555433210 00 02344455555555555555555555554320 0 111 123444444
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHH
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVHP-N----VVMFTTVISGWCNAVKMQRAMSIYEKMCEI----GINPN-LKTYETLLW 388 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~ 388 (548)
+|.. |++++|+..|++..+..... + ..++..+...|...|++++|+..|+++++. +..+. ..++..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 4444 55555555555444310000 0 223444455555555555555555554432 10000 113333444
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 008925 389 GYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~ 407 (548)
++...|++++|...|++..
T Consensus 204 ~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 4444455555555555444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-08 Score=87.09 Aligned_cols=186 Identities=8% Similarity=0.001 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-H---HH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMK-PD-SILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT-T---ST 101 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~ 101 (548)
+...+..++..+.+.|++++|+..|+++.+.... |. ...+..+..+|.+.|++++|+..|+++.+.. |+ . .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 3445566667777778888888888777765211 11 3466667777777788888888887777652 22 1 23
Q ss_pred HHHHHHHHhc------------------cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008925 102 YNTLIKGYGN------------------VGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVA 163 (548)
Q Consensus 102 ~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 163 (548)
+..+..++.. .|++++|+..|+++.+.. |.+...+....... .+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----------~~~~~~-- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----------FLKDRL-- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----------HHHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----------HHHHHH--
Confidence 4444444433 456777777777776642 22222222111100 000000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008925 164 SGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPN--ERTCGIIVSGYCKEGNMEDAMRFLYRMKELE 235 (548)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 235 (548)
......++..|...|++++|...|+.+++..+... ...+..++.++.+.|++++|.+.++.+...+
T Consensus 147 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01123466788888999999999998887643311 2467778888899999999999998887754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-08 Score=93.11 Aligned_cols=86 Identities=12% Similarity=-0.002 Sum_probs=42.1
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHH
Q 008925 286 SSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRA 364 (548)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 364 (548)
...++.+.|...+++++... |.+...+..+...+...|++++|+..|+++.+..... +...+..++..+...|+.++|
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 33444444555555555443 3444555555555555555555555555555432110 133455555555555555555
Q ss_pred HHHHHHHH
Q 008925 365 MSIYEKMC 372 (548)
Q Consensus 365 ~~~~~~~~ 372 (548)
...|++.+
T Consensus 275 ~~~~r~al 282 (287)
T 3qou_A 275 ASXYRRQL 282 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.3e-08 Score=85.46 Aligned_cols=131 Identities=9% Similarity=-0.086 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 313 FSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
+..++..+...|++++|+..|+++. .|+...+..++..+...|++++|+..|+++++.. +.+...+..++.+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3445556666666777766666553 3456666666666666777777777777766654 4456666666677777
Q ss_pred cCChHHHHHHHHHHHHCCC--------------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 393 AKQPWRAEELLQVMEEKGV--------------RPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 393 ~g~~~~A~~~~~~~~~~~~--------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
.|++++|+..|+++.+... .|+ ...+..++.++...|++++|...++++.+..|..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 7777777777776665321 111 1466667777777777777777777777665543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-08 Score=92.17 Aligned_cols=200 Identities=11% Similarity=0.037 Sum_probs=109.6
Q ss_pred ccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 6 GKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTR-QKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAM 84 (548)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 84 (548)
..|++++|.++++++.+.... . +.+ .++++.|...|+++ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 468899999999988764221 1 111 35555555555543 23455556666666
Q ss_pred HHHHHHHhcCC---CC--CHHHHHHHHHHHhccCChHHHHHHHHHhhhC---CCCCC-CHHHHHHHHHHHHhCCCHHHHH
Q 008925 85 KIFQKMKDSGC---KP--TTSTYNTLIKGYGNVGKPEESLKLLQLMSQD---KNVKP-NDRTYNILVRAWCSKNSIEEAW 155 (548)
Q Consensus 85 ~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~a~ 155 (548)
..|.+...... .+ -..+|..+..+|...|++++|+..|++.... .+.+. ...++..+..+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 66665543210 00 1235555666666666666666666554332 01000 12455566666655 6666666
Q ss_pred HHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 008925 156 NVVYKMVASGIQP-----DAVTYNTLARAYAQYGETYRAEQMLFEMQNN----QVRPN-ERTCGIIVSGYCKEGNMEDAM 225 (548)
Q Consensus 156 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~ 225 (548)
..|++.++..... ...++..+...+...|++++|+..|++.... +..+. ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666655431000 1345666667777777777777777665542 11111 224555556666667777777
Q ss_pred HHHHHHH
Q 008925 226 RFLYRMK 232 (548)
Q Consensus 226 ~~~~~~~ 232 (548)
..|++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7777766
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.9e-07 Score=83.87 Aligned_cols=164 Identities=7% Similarity=-0.079 Sum_probs=124.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CC----HHHH
Q 008925 280 TIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIH------VFSILAKGYVRAGEPQKAESILTSMRKYGVH-PN----VVMF 348 (548)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~ 348 (548)
..+..+...|++++|..+++...+.. +.+.. .+..++..+...+++++|+..++++.+.... ++ ..++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34667888999999999999988753 22222 3345677777888999999999999874222 22 2368
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHH
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEI-----GINPN-LKTYETLLWGYGEAKQPWRAEELLQVMEE----KGVRPK-KST 417 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~ 417 (548)
+.++..|...|++++|+.+|+++++. +..+. ..++..++..|...|++++|+.++++.++ .+..+. ...
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999999999842 11122 24688999999999999999999998874 222333 458
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhc
Q 008925 418 IQLVADSWRAIG-LAREAKRVLKSAEED 444 (548)
Q Consensus 418 ~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 444 (548)
+..++.++...| .+++|++.++++.+.
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 889999999999 579999999997643
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.5e-07 Score=83.49 Aligned_cols=219 Identities=11% Similarity=0.020 Sum_probs=136.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-C-ChhHHH
Q 008925 219 GNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIK-DSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSA-G-LMGKCQ 295 (548)
Q Consensus 219 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~ 295 (548)
+..++|++++++++..+ +.+..+|+.-...+...+ .+++++..++.+....++ +..+|+.-..++... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence 33455666666666543 344555666555555555 366666666666665533 555566555555554 5 666777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-------
Q 008925 296 EIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQ--------KAESILTSMRKYGVHPNVVMFTTVISGWCNAVK------- 360 (548)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------- 360 (548)
.++..+++.+ +.+..+|+.-..++.+.|.++ ++++.++++.+.+ +-|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 7777777665 556666666555555555555 7777777777754 2366677777777766665
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh--------------------HHHHHHHHHHHHCC----C-CCCH
Q 008925 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQP--------------------WRAEELLQVMEEKG----V-RPKK 415 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~----~-~p~~ 415 (548)
++++++++++++... +-|...|..+-..+.+.|+. .+...+..++...+ . .++.
T Consensus 224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 678888888888765 66777777777777666654 12222222222211 0 2455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 416 STIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 416 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
..+..++++|...|+.++|.++++.+.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 677888899988899999999998875
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.95 E-value=6.6e-09 Score=83.64 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=52.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWR 426 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (548)
.+..++..+.+.|++++|+..|+++++.. |.+...|..++.+|...|++++|+..|+++.+.. +.+...+..++.++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 44555555555555555555555555543 4445555555555555555555555555555432 112335555555555
Q ss_pred HcCCHHHHHHHHHHHHhcc
Q 008925 427 AIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~ 445 (548)
..|++++|+..++++.+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 5555555555555555443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.4e-08 Score=76.32 Aligned_cols=95 Identities=12% Similarity=0.087 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYG 391 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (548)
.+...+..|.+.|++++|+..|+++++.. +.+...|..++.++...|++++|+..|+++++.+ +.+...|..++.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 44455555555555555555555555432 2234455555555555555555555555555543 444555555555565
Q ss_pred hcCChHHHHHHHHHHHH
Q 008925 392 EAKQPWRAEELLQVMEE 408 (548)
Q Consensus 392 ~~g~~~~A~~~~~~~~~ 408 (548)
..|++++|++.|++.++
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66666666666655555
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.1e-08 Score=76.55 Aligned_cols=98 Identities=12% Similarity=-0.062 Sum_probs=49.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWR 426 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (548)
.+...+..|.+.|++++|++.|+++++.. |.+...|..++.+|...|++++|+..+++.++.+ +.+...+..++.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 34444555555555555555555555443 3444555555555555555555555555555431 122334555555555
Q ss_pred HcCCHHHHHHHHHHHHhccC
Q 008925 427 AIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~~ 446 (548)
..|++++|++.++++.+.+|
T Consensus 93 ~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HCCCHHHHHHHHHHHHHHCc
Confidence 55555555555555554444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-06 Score=80.45 Aligned_cols=172 Identities=5% Similarity=-0.089 Sum_probs=98.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-CHHHHH
Q 008925 149 NSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYG-ETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKE-G-NMEDAM 225 (548)
Q Consensus 149 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~ 225 (548)
+..++|++++++++..+ +-+..+|+.-...+...| .+++++++++.++...++ +..+|+.-..++... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence 33455666666666553 334555555555555555 366666666666665444 555555555555544 4 566666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh--------hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-------
Q 008925 226 RFLYRMKELEVHPNLVVFNSLIKGFLDIKDSD--------GVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGL------- 290 (548)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------- 290 (548)
.+++++++.. +.+..+|+.-.-.+...+.++ ++.+.++.+.+..+. |...|+.....+.+.+.
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHH
Confidence 6666666543 445566655544444444444 556666666655433 55566666555555554
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 008925 291 MGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGE 325 (548)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (548)
++++++.+.+++... +.|...|+.+-..+.+.|+
T Consensus 224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 466666666666654 5566666666655555554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.5e-07 Score=84.34 Aligned_cols=127 Identities=9% Similarity=0.027 Sum_probs=62.1
Q ss_pred HHHHhccCChHHHHHHHHHhhhCCCCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 008925 106 IKGYGNVGKPEESLKLLQLMSQDKNVKPNDR----TYNILVRAWCSKNSIEEAWNVVYKMVASGIQ-PD----AVTYNTL 176 (548)
Q Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 176 (548)
+..+...|++++|..++++........|+.. .+..+...+...+++++|+..++++++.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4455566666666666666654322222211 2223444455555666666666666553211 11 2245555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 177 ARAYAQYGETYRAEQMLFEMQNN-----QVRP-NERTCGIIVSGYCKEGNMEDAMRFLYRMK 232 (548)
Q Consensus 177 ~~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 232 (548)
+.+|...|++++|...++++.+. +..+ ...++..++.+|.+.|++++|+..+++.+
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66666666666666666555421 0000 12244455555555555555555555543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-06 Score=79.84 Aligned_cols=184 Identities=10% Similarity=0.021 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HhHHHHHH
Q 008925 257 DGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAG--LMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGE-PQKAESIL 333 (548)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~ 333 (548)
+++...+..+....++ +..+|+.-..++...+ .+++++.++..+++.. +.+..+|+.-..++...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4455555555554432 4555555555555555 2556666666666554 4555566555555555555 35666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcc--------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc------
Q 008925 334 TSMRKYGVHPNVVMFTTVISGWCNA--------------VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEA------ 393 (548)
Q Consensus 334 ~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 393 (548)
+.+.+.+ +-|...|+.....+... +.++++++++++++... |-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 6666543 22444555444443332 44677777777777765 55666676555555544
Q ss_pred -----CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH---HHHcCCHHHHHHHHHHHHhccC
Q 008925 394 -----KQPWRAEELLQVMEEKGVRPKKS-TIQLVADS---WRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 394 -----g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
+.++++++.++++.+. .|+.. .+..++.. ....|..++....+.++.+.+|
T Consensus 247 ~~~~~~~l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 3467788888888764 46543 22222211 1234667777777777766654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.88 E-value=5.5e-09 Score=84.10 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLW 388 (548)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 388 (548)
+...+..+...+.+.|++++|+..|+++.... +.+...|..++.+|...|++++|+..|+++++.. |.++..|..++.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 45577788888888889999999888888764 3356788888888888899999999999888875 566788888888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 008925 389 GYGEAKQPWRAEELLQVMEEKGVRPKKS 416 (548)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 416 (548)
+|...|++++|+..|++.++. .|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 888999999999999888874 46654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-07 Score=84.09 Aligned_cols=168 Identities=7% Similarity=-0.044 Sum_probs=115.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC---CCC--H
Q 008925 277 TFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDI------HVFSILAKGYVRAGEPQKAESILTSMRKYGV---HPN--V 345 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~ 345 (548)
.+...+..+...|++++|...+...++.. +... ..+..++..+...|++++|+..++++.+... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455666777888888888887777653 2222 2234455667777888888888888775321 111 3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEI--GINPN----LKTYETLLWGYGEAKQPWRAEELLQVMEEK----GVRPK- 414 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~- 414 (548)
.+++.++..|...|++++|+.+|+++++. ..+.+ ..++..++.+|...|++++|+.++++.++. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47788888888888888888888888732 11222 157788888888899999999888887642 11111
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcc
Q 008925 415 KSTIQLVADSWRAIGLAREA-KRVLKSAEEDR 445 (548)
Q Consensus 415 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~ 445 (548)
..++..++.++...|++++| ...++++.+..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 45778888888899999988 77788876443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-08 Score=82.57 Aligned_cols=102 Identities=12% Similarity=-0.036 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008925 345 VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADS 424 (548)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 424 (548)
...+..++..+...|++++|+..|++++... +.+...|..++.+|...|++++|+..|+++++.. +.+...+..++.+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3355566666667777777777777776654 5566666677777777777777777777766542 2234466666777
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCC
Q 008925 425 WRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 425 ~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
+...|++++|+..++++.+..|..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCC
Confidence 777777777777777766555543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-07 Score=81.51 Aligned_cols=130 Identities=12% Similarity=0.021 Sum_probs=100.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 008925 278 FSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN 357 (548)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 357 (548)
+..+...+...|++++|...|++++ .|+..++..++.+|...|++++|+..++++.+.. +.+...+..++.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4456667778888888888887764 5577788888888888888888888888887753 3356677888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008925 358 AVKMQRAMSIYEKMCEIGINPNL----------------KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK 415 (548)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 415 (548)
.|++++|+..|+++.+.. +.+. ..+..++.+|...|++++|...|+++.+. .|+.
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 888888888888888753 2222 67888999999999999999999999874 4543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-07 Score=77.94 Aligned_cols=129 Identities=9% Similarity=-0.016 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 311 HVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390 (548)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (548)
..+..++..+...|++++|...|+++.+.. +.+...+..++..+...|++++|+..++++++.. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456677778888888888888888887753 3356778888888888888899998888888875 56778888888889
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHH
Q 008925 391 GEAKQPWRAEELLQVMEEKGVRPKKSTIQL--VADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
...|++++|...++++.+.. +.+...+.. .+..+...|++++|+..+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999998888753 223344433 3444777889999999988754
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-07 Score=77.72 Aligned_cols=129 Identities=10% Similarity=-0.006 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008925 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGW 355 (548)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 355 (548)
..+..+...+...|++++|...++++++.. +.+..++..++.++...|++++|...+++..+.. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777888888888888888888765 5567788888888888889999988888888753 33566788888888
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcCChHHHHHHHHHHH
Q 008925 356 CNAVKMQRAMSIYEKMCEIGINPNLKTYETL--LWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~ 407 (548)
...|++++|...|+++.+.. +.+...+..+ +..+...|++++|+..+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88899999999999888864 4455555433 344777788888888887654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.86 E-value=7.4e-08 Score=80.40 Aligned_cols=123 Identities=9% Similarity=0.039 Sum_probs=94.2
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh-
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINA-CSESGNV- 80 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 80 (548)
.+...|++++|+..|+.+++..+ .+...|..++..+...|++++|+..|+++.+.. +.+...+..+..+ +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 45678888899999988888754 367788888888888999999999998887764 4467777778877 7788888
Q ss_pred -HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhC
Q 008925 81 -DEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQD 128 (548)
Q Consensus 81 -~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 128 (548)
++|...|+++.+.. +.+...+..+..++...|++++|+..|+++...
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888888763 345677888888888888888888888888775
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.82 E-value=6e-07 Score=81.79 Aligned_cols=167 Identities=8% Similarity=-0.055 Sum_probs=118.3
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CCC--HH
Q 008925 242 VFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPD-----VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI---EPD--IH 311 (548)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 311 (548)
.+...+..+...|++++|.+.+....+...... ...+..+...+...|++++|...+.++.+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444455666677777777777766665432211 12233455667788899999999988875321 122 45
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHHHHcC----CCC-CH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKY-GVHPN-----VVMFTTVISGWCNAVKMQRAMSIYEKMCEIG----INP-NL 380 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~ 380 (548)
+++.++..|...|++++|...++++.+. ...|+ ..++..++..|...|++++|+.+++++++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999999988731 00122 2578889999999999999999999988642 111 15
Q ss_pred HHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 008925 381 KTYETLLWGYGEAKQPWRA-EELLQVMEE 408 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 408 (548)
.+|..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777887753
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-07 Score=83.05 Aligned_cols=133 Identities=11% Similarity=-0.042 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPN--LKTYETLLWG 389 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~ 389 (548)
....+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 44556677888888888888888877643 444455566667788888888888888665421 111 2367778888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 390 YGEAKQPWRAEELLQVMEEKGVRPK--KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
+...|++++|+..|++.......|. .......+.++.+.|+.++|...|+++.+.+|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 8888888889888888875433254 336677788888889999999999888877654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.3e-07 Score=71.91 Aligned_cols=114 Identities=15% Similarity=0.133 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 311 HVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390 (548)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (548)
..+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|..+|+++.+.. +.+..++..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 345555555555566666666555555432 2234455555555556666666666666655543 34455555666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008925 391 GEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRA 427 (548)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 427 (548)
...|++++|...++++.+.. +.+...+..++.++..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 66666666666666655432 1223344444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.8e-08 Score=81.07 Aligned_cols=120 Identities=11% Similarity=0.096 Sum_probs=67.2
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCCh--HH
Q 008925 287 SAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISG-WCNAVKM--QR 363 (548)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 363 (548)
..|++++|...++..++.. +.+...+..++.+|...|++++|...|+++.+.. +.+...+..++.+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455566666666655553 4455566666666666666666666666665532 1234455555555 5555665 66
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 364 AMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
|+..|+++++.. +.+...+..++..|...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666666553 344555666666666666666666666666553
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.2e-08 Score=83.37 Aligned_cols=158 Identities=10% Similarity=-0.005 Sum_probs=96.6
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcC
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKD----GMK-PDSILFNAMINACSESG 78 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g 78 (548)
+...|++++|.+.++.+.. .+.....++..++..+...|++++|+..+++.... +.+ ....++..+...+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4567888888886655543 23335577888888888888888888888887652 111 22446777778888888
Q ss_pred ChHHHHHHHHHHHhc----CCCC--CHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhC
Q 008925 79 NVDEAMKIFQKMKDS----GCKP--TTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPN----DRTYNILVRAWCSK 148 (548)
Q Consensus 79 ~~~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 148 (548)
++++|...+++..+. +-.+ ...++..+...+...|++++|+..+++.........+ ..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 888888888877653 1011 1244666777777777877777777766431100111 12345555566666
Q ss_pred CCHHHHHHHHHHHH
Q 008925 149 NSIEEAWNVVYKMV 162 (548)
Q Consensus 149 g~~~~a~~~~~~~~ 162 (548)
|++++|...+++..
T Consensus 161 g~~~~A~~~~~~al 174 (203)
T 3gw4_A 161 KNLLEAQQHWLRAR 174 (203)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 66666666665544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.3e-08 Score=83.33 Aligned_cols=159 Identities=9% Similarity=-0.099 Sum_probs=105.0
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHhccCC
Q 008925 286 SSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRK----YGVHP-NVVMFTTVISGWCNAVK 360 (548)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~ 360 (548)
...|++++|..+++.+... ......++..+...+...|++++|...+++..+ .+..| ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3467777777755444332 123455777777788888888888888877765 11112 23466777888888888
Q ss_pred hHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHHcC
Q 008925 361 MQRAMSIYEKMCEI--GINPN----LKTYETLLWGYGEAKQPWRAEELLQVMEEKG---VRPK--KSTIQLVADSWRAIG 429 (548)
Q Consensus 361 ~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~g 429 (548)
+++|...++++.+. ..+.+ ...+..+...+...|++++|...+++..+.. -.+. ..++..++.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888887753 11212 3457778888888899999988888876321 0111 224567888889999
Q ss_pred CHHHHHHHHHHHHhcc
Q 008925 430 LAREAKRVLKSAEEDR 445 (548)
Q Consensus 430 ~~~~A~~~~~~~~~~~ 445 (548)
++++|.+.++++.+..
T Consensus 162 ~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998877544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.80 E-value=3.1e-07 Score=71.13 Aligned_cols=115 Identities=12% Similarity=0.181 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 275 VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISG 354 (548)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 354 (548)
...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|..+++++.+.. +.+..++..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4556666677777777777777777777654 4556667777777777777777777777776643 2345566677777
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 355 WCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
+...|++++|...|+++.+.. +.+...+..+..++..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 777777777777777777654 4455555555555543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.4e-08 Score=79.56 Aligned_cols=110 Identities=14% Similarity=0.012 Sum_probs=80.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 008925 16 IFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGC 95 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 95 (548)
.|+.+++..+ .+...+..++..+...|++++|+..|+++.... +.+...|..+..+|...|++++|+..|+++....
T Consensus 9 ~~~~al~~~p-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEISS-DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCCH-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 4555554332 244567777788888888888888888887763 4567777788888888888888888888887763
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhhhC
Q 008925 96 KPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQD 128 (548)
Q Consensus 96 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 128 (548)
+.+...+..+..+|...|++++|+..|++....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345677777888888888888888888777654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-07 Score=73.46 Aligned_cols=118 Identities=12% Similarity=0.044 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008925 308 PDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLL 387 (548)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 387 (548)
.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|+..++++.+.. +.+...+..++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345566777777777777777777777777653 2355667777777777777777777777777764 45667777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 008925 388 WGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIG 429 (548)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 429 (548)
.++...|++++|...+++..+. .|+ ...+..++.++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 7777777777777777777654 233 345555666665544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.78 E-value=6.9e-08 Score=87.33 Aligned_cols=194 Identities=8% Similarity=-0.044 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 239 NLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAK 318 (548)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (548)
+...+..+...+...|++++|...++...+..+ .+...+..+..++...|++++|...++++++.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 445666677777777777777777777776542 266777788888888888888888888888775 566778888888
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVHPNV-VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPW 397 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 397 (548)
+|...|++++|...|+++.+.+ |+. ..+...+....+ ..++.. +........+++......+...+ .|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHHH--HHHHH
Confidence 8888888888888888877632 211 011111111111 111111 22233333455555544443332 68888
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 008925 398 RAEELLQVMEEKGVRPKKS-TIQLVADSWRAI-GLAREAKRVLKSAEED 444 (548)
Q Consensus 398 ~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 444 (548)
+|++.++++.+. .|+.. ....+...+... +.+++|.++|+++.+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999888887764 56654 444455555554 6788999999987643
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.78 E-value=6.3e-08 Score=87.58 Aligned_cols=98 Identities=11% Similarity=-0.015 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008925 134 NDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVS 213 (548)
Q Consensus 134 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 213 (548)
+...+..++..+...|++++|+..|++.++.. +.+...|..+..++...|++++|...+++..+..+. +...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34445555556666666666666666665542 234555666666666666666666666666554332 4555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 008925 214 GYCKEGNMEDAMRFLYRMKE 233 (548)
Q Consensus 214 ~~~~~g~~~~A~~~~~~~~~ 233 (548)
++...|++++|+..|+++.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.9e-07 Score=72.03 Aligned_cols=116 Identities=9% Similarity=0.006 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYG 391 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (548)
.+..++..+...|++++|...++++.... +.+...+..++..+...|++++|+..++++.+.. +.+...+..++.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 34444444445555555555555444431 1233444444555555555555555555555442 333444555555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008925 392 EAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGL 430 (548)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 430 (548)
..|++++|...+++..+.. +.+...+..++.++...|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5555555555555554431 1123344444444444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-07 Score=83.21 Aligned_cols=130 Identities=10% Similarity=-0.003 Sum_probs=68.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 008925 101 TYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD--AVTYNTLAR 178 (548)
Q Consensus 101 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 178 (548)
....+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. ...+..+..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHH
Confidence 3444455555566666666666555432 2322244444445556666666666665443321 110 224555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 179 AYAQYGETYRAEQMLFEMQNNQVRPN--ERTCGIIVSGYCKEGNMEDAMRFLYRMKEL 234 (548)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 234 (548)
++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666666666666666653322132 234445555666666666666666666654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=8.4e-06 Score=74.09 Aligned_cols=48 Identities=8% Similarity=0.077 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHhcCChHHHHHHHHHHHH
Q 008925 360 KMQRAMSIYEKMCEIGINPNLKTYETLLW---GYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~ 408 (548)
.++++++.++++++.. |.+.-++..++. +....|..+++..++.++++
T Consensus 253 ~l~~el~~~~elle~~-pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 253 VLQSELESCKELQELE-PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhC-cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3566666666666643 223222222221 12234556667777777765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-07 Score=85.66 Aligned_cols=131 Identities=11% Similarity=-0.006 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 008925 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN--------------VVMFTTVISGWCNAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 374 (548)
+...+..+...|.+.|++++|+..|+++++...... ...|..+..+|.+.|++++|+..|+++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344566666677777777777777777666421111 467888888888899999999999998887
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 008925 375 GINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP-KKSTIQLVADSWRAIGLAREA-KRVLKSAE 442 (548)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 442 (548)
. +.+...+..++.+|...|++++|+..|+++++. .| +...+..++.++...|+.++| ...++++.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 667888888889999999999999999988875 34 455788888888888888888 44556554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.2e-07 Score=73.11 Aligned_cols=118 Identities=12% Similarity=0.059 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008925 274 DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVIS 353 (548)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 353 (548)
+...+..+...+...|++++|...++++++.. +.+..++..++.++...|++++|+..++++.+.. +.+...+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 35566667777777777777777777777654 4466677777777777777777777777776643 234566777777
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008925 354 GWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK 394 (548)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 394 (548)
++...|++++|++.|+++.+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 7777777777777777777653 334455666666655544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-07 Score=72.11 Aligned_cols=120 Identities=11% Similarity=0.037 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008925 274 DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVIS 353 (548)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 353 (548)
+...+..+...+...|+++.|...++++.... +.+...+..++..+...|++++|...++++.+.. +.+...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 35567777888888889999999888888765 5577788888888888899999998888888753 334667888888
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 008925 354 GWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQP 396 (548)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (548)
.+...|++++|...|+++.+.. +.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 8888899999999998888875 55677777888887777764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-07 Score=74.58 Aligned_cols=98 Identities=12% Similarity=-0.039 Sum_probs=57.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWR 426 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (548)
.+..+...+...|++++|+..|++++... |.+...|..++.+|...|++++|+..|+++++.. +.+...+..++.++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 44455555666666666666666666554 4455566666666666666666666666666532 223345555666666
Q ss_pred HcCCHHHHHHHHHHHHhccC
Q 008925 427 AIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~~ 446 (548)
..|++++|++.++++.+..|
T Consensus 98 ~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 66666666666666655444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-07 Score=73.74 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC----HHHHH
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKG--VRPK----KSTIQ 419 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~~ 419 (548)
..+..++..+.+.|++++|+..|+++++.. |.+...|..++.+|...|++++|+..+++.++.. ..++ ..++.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 356677888888888888888888888765 5667778888888888888888888888877531 1111 23667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 420 LVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 420 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
.++.++...|++++|++.++++.+..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 788888889999999999988875443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3.7e-07 Score=84.85 Aligned_cols=130 Identities=10% Similarity=-0.025 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 008925 275 VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPD---------------IHVFSILAKGYVRAGEPQKAESILTSMRKY 339 (548)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (548)
...+..+...+...|++++|...|+++++.. +.+ ..+|..+..+|.+.|++++|+..++++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566777777888888888888888888764 333 578889999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 008925 340 GVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRA-EELLQVME 407 (548)
Q Consensus 340 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 407 (548)
. +.+...+..+..+|...|++++|+..|+++++.. +.+...+..+..++...|++++| ...++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3367788999999999999999999999999875 66788889999999999999888 45666664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.7e-07 Score=71.14 Aligned_cols=97 Identities=12% Similarity=-0.038 Sum_probs=50.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWR 426 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (548)
.+..++..+...|++++|+..|+++++.. +.+...|..++.++...|++++|+..+++.++.. +.+...+..++.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444555555555555555555555543 3445555555555555555555555555555432 112335555555555
Q ss_pred HcCCHHHHHHHHHHHHhcc
Q 008925 427 AIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~ 445 (548)
..|++++|+..++++.+.+
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 5555555555555554433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.5e-07 Score=70.12 Aligned_cols=96 Identities=15% Similarity=0.065 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 311 HVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390 (548)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (548)
..+..++..+.+.|++++|+..|++..+.. +.+...|..++.++...|++++|+..|+++++.. +.+...+..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 455666667777777777777777776643 2345667777777777777777777777777764 55566777777777
Q ss_pred HhcCChHHHHHHHHHHHH
Q 008925 391 GEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~ 408 (548)
...|++++|+..|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 777777777777777765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.67 E-value=6e-07 Score=73.74 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 310 IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWG 389 (548)
Q Consensus 310 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (548)
...+..+...+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4455566666666666666666666666542 2244556666666666666666666666666654 4445566666666
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 008925 390 YGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~ 408 (548)
|...|++++|+..|++.++
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 6666666666666666654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=6.9e-07 Score=70.70 Aligned_cols=100 Identities=13% Similarity=-0.038 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008925 344 NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVAD 423 (548)
Q Consensus 344 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 423 (548)
+...+..++..+...|++++|+..|+++++.. +.+...+..++.++...|++++|+..+++.++.. +.+...+..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 34455555555555555666665555555543 3445555555555666666666666666555432 123345555566
Q ss_pred HHHHcCCHHHHHHHHHHHHhcc
Q 008925 424 SWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 424 ~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
++...|++++|+..++++.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 6666666666666666555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.3e-07 Score=70.83 Aligned_cols=95 Identities=12% Similarity=0.109 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC--CCCC----HHHHHHH
Q 008925 313 FSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIG--INPN----LKTYETL 386 (548)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~l 386 (548)
+..++..+.+.|++++|+..|+++++.. +.+...|..++.+|...|++++|++.++++++.. ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444444444444444444444432 1123344444444444444444444444444321 0111 1234444
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 008925 387 LWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
+.++...|++++|++.|++.++
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555555555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-07 Score=75.89 Aligned_cols=99 Identities=11% Similarity=-0.046 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLW 388 (548)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 388 (548)
+...+..+...+...|++++|+..|+++...+ +.+...|..+..++...|++++|+..|+++++.. |.+...+..++.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34455666777777888888888888777653 2356677777777888888888888888887765 556677777888
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 008925 389 GYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~ 409 (548)
+|...|++++|...|++.++.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888877653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=5.3e-08 Score=83.05 Aligned_cols=87 Identities=14% Similarity=-0.008 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP-KKSTIQLVADS 424 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 424 (548)
..+..+..++...|++++|+..++++++.. +.+...+..++.+|...|++++|+..|++..+. .| +...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHH
Confidence 344555555555555555555555555543 344555555555555666666666666555543 23 23355555555
Q ss_pred HHHcCCHHHHH
Q 008925 425 WRAIGLAREAK 435 (548)
Q Consensus 425 ~~~~g~~~~A~ 435 (548)
+...|+.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.4e-07 Score=68.70 Aligned_cols=101 Identities=14% Similarity=0.015 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 008925 345 VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP--KKSTIQLVA 422 (548)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~ 422 (548)
...+..++..+...|++++|+..|+++++.. +.+...+..++.++...|++++|+..+++..+.. +. +...+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 4456666777777777777777777777664 4566677777777777777777777777777642 22 355677777
Q ss_pred HHHHHc-CCHHHHHHHHHHHHhccCC
Q 008925 423 DSWRAI-GLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 423 ~~~~~~-g~~~~A~~~~~~~~~~~~~ 447 (548)
.++... |++++|++.++++.+..|.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 777777 7777777777777655543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=7.7e-08 Score=82.02 Aligned_cols=149 Identities=10% Similarity=-0.006 Sum_probs=76.7
Q ss_pred HHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH----------------H
Q 008925 248 KGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDI----------------H 311 (548)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~ 311 (548)
......|+++.+.+.+....... ......+..+...+...|++++|...|.++++.. +.+. .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHH
Confidence 33344455555544444222211 1123345555666666666666666666666542 1222 5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYG 391 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (548)
++..+..+|...|++++|+..++++.+.. +.+...+..++.++...|++++|+..|+++++.. +.+...+..+..++.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH
Confidence 56666666666666666666666666542 2245566666666666666666666666666653 445555666665555
Q ss_pred hcCChHHHH
Q 008925 392 EAKQPWRAE 400 (548)
Q Consensus 392 ~~g~~~~A~ 400 (548)
..++.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 555555444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=4e-07 Score=70.29 Aligned_cols=96 Identities=14% Similarity=0.007 Sum_probs=68.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 008925 348 FTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP-KKSTIQLVADSWR 426 (548)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 426 (548)
+..++..+.+.|++++|+..|+++++.. |.+...|..++.++...|++++|+..|++.++. .| +...+..++.++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 4456666777778888888888877764 556777777777777888888888888777764 34 3457777777777
Q ss_pred HcCCHHHHHHHHHHHHhccC
Q 008925 427 AIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~~ 446 (548)
..|++++|+..++++.+.+|
T Consensus 97 ~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HcCCHHHHHHHHHHHHHhCc
Confidence 88888888888877765544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-06 Score=66.12 Aligned_cols=95 Identities=12% Similarity=-0.002 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYG 391 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (548)
.+..++..+...|++++|...++++.... +.+...+..++..+...|++++|...++++.+.. +.+...+..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444555555555555555555554432 1234445555555555555555555555555543 334455555555555
Q ss_pred hcCChHHHHHHHHHHHH
Q 008925 392 EAKQPWRAEELLQVMEE 408 (548)
Q Consensus 392 ~~g~~~~A~~~~~~~~~ 408 (548)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-06 Score=65.76 Aligned_cols=111 Identities=14% Similarity=0.064 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 275 VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISG 354 (548)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 354 (548)
...+..+...+...|++++|...++.+.... +.+...+..++.++...|++++|...++++.+.. +.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456667777778888888888888887764 5567777778888888888888888888877653 2346677777888
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 355 WCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLW 388 (548)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 388 (548)
+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 114 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQN 114 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 888888888888888887754 445555544443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.6e-06 Score=67.30 Aligned_cols=100 Identities=12% Similarity=-0.024 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008925 307 EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETL 386 (548)
Q Consensus 307 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 386 (548)
+.+...+..++..+...|++++|...|+++.... +.+...+..++.++...|++++|+..++++++.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3456677777777777777777777777776653 2345667777777777777777777777777764 5566777777
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 008925 387 LWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
+.++...|++++|+..|+++.+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 7777778888888877777764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.55 E-value=6.8e-07 Score=69.86 Aligned_cols=108 Identities=11% Similarity=0.088 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGI--NPN----LKTYET 385 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~ 385 (548)
.+..++..+...|++++|...|+++.+.. +.+...+..++..+...|++++|...++++.+... +++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44455555555555555555555555432 22344555555555555556666655555554320 111 445555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008925 386 LLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVA 422 (548)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 422 (548)
++.++...|++++|...|+++.+. .|+......+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 566666666666666666666553 24444443333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.3e-06 Score=67.62 Aligned_cols=97 Identities=11% Similarity=-0.011 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 008925 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN----VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYE 384 (548)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 384 (548)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|+..++++++.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3445555555555555555555555555543 233 3445555555555556666666655555543 33455555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 008925 385 TLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
.+..++...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555556666666666655554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-06 Score=71.12 Aligned_cols=99 Identities=10% Similarity=0.029 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIK 107 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 107 (548)
+...+..++..+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++.++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44677888888888889999998888888764 4567788888888888888888888888888764 345778888888
Q ss_pred HHhccCChHHHHHHHHHhhhC
Q 008925 108 GYGNVGKPEESLKLLQLMSQD 128 (548)
Q Consensus 108 ~~~~~g~~~~A~~~~~~~~~~ 128 (548)
+|...|++++|+..|++....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888887764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-06 Score=67.41 Aligned_cols=93 Identities=6% Similarity=-0.077 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008925 314 SILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEA 393 (548)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (548)
..++..+.+.|++++|+..|+++.+.. +.+...|..+..++...|++++|+..|+++++.. |.+...+..++.++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 344455556666666666666665542 2244455556666666666666666666666554 44555566666666666
Q ss_pred CChHHHHHHHHHHHH
Q 008925 394 KQPWRAEELLQVMEE 408 (548)
Q Consensus 394 g~~~~A~~~~~~~~~ 408 (548)
|++++|+..++++++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.1e-06 Score=63.86 Aligned_cols=99 Identities=10% Similarity=0.025 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CHHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKP--TTSTYNTL 105 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 105 (548)
+...+..++..+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44567777888888888888888888887763 4467778888888888888888888888887763 33 56778888
Q ss_pred HHHHhcc-CChHHHHHHHHHhhhC
Q 008925 106 IKGYGNV-GKPEESLKLLQLMSQD 128 (548)
Q Consensus 106 ~~~~~~~-g~~~~A~~~~~~~~~~ 128 (548)
..++... |++++|++.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 8888888 8888888888887764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-06 Score=71.45 Aligned_cols=133 Identities=11% Similarity=0.013 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCC----HH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVH-PN----VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGI-NPN----LK 381 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~ 381 (548)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...++++.+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4556666666777777777777666542100 11 13566677777777777777777777665310 111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008925 382 TYETLLWGYGEAKQPWRAEELLQVMEEK----GVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEED 444 (548)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (548)
.+..+...+...|++++|...+++..+. +..+. ...+..++.++...|++++|.+.++++.+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5667777888888888888888877632 11111 235667788888889999999988887643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-06 Score=68.61 Aligned_cols=102 Identities=12% Similarity=-0.060 Sum_probs=75.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-------CH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHC-----
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEIGINP-------NL-----KTYETLLWGYGEAKQPWRAEELLQVMEEK----- 409 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 409 (548)
.+...+..+...|++++|+..|+++++.. |. +. ..|..+..++...|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34455555666677777777777766643 11 22 37888888888899999998888888873
Q ss_pred CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 410 GVRPKKS-TI----QLVADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 410 ~~~p~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
.+.|+.. .| ...+.++...|++++|+..|+++.+..|.-.
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 1267755 77 8999999999999999999999987665443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.2e-06 Score=66.82 Aligned_cols=112 Identities=9% Similarity=0.103 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC--CCC----HHHHH
Q 008925 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGV--HPN----VVMFT 349 (548)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~ 349 (548)
..+..+...+...|++++|...++++++.. +.+...+..++..+...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456677777888888888888888888765 55677888888888888888888888888776421 112 56777
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 350 TVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390 (548)
Q Consensus 350 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (548)
.++.++...|++++|.+.|+++.+. .|+......+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 8888888888999999999888885 35666655555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-06 Score=84.69 Aligned_cols=118 Identities=12% Similarity=0.034 Sum_probs=53.1
Q ss_pred HHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH
Q 008925 249 GFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQK 328 (548)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (548)
.+...|++++|.+.+++..+..+ .+...+..+..++...|++++|+..++++++.. +.+..++..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 34444555555555555554431 134445555555555555555555555555443 3344455555555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH--HhccCChHHHHHHHH
Q 008925 329 AESILTSMRKYGVHPNVVMFTTVISG--WCNAVKMQRAMSIYE 369 (548)
Q Consensus 329 A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 369 (548)
|+..|+++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555554432 1122233333333 444455555555544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=9e-06 Score=65.00 Aligned_cols=112 Identities=11% Similarity=0.013 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHH
Q 008925 274 DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPD----IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFT 349 (548)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 349 (548)
+...+..+...+...|++++|...|+++++. .|+ ...+..+..+|...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4556666777777777777777777777765 344 5567777777777788888887777777642 22456677
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 350 TVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWG 389 (548)
Q Consensus 350 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (548)
.+..++...|++++|...|+++++.. +.+...+..+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 77777777788888888888777754 3444555444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.42 E-value=3.7e-06 Score=81.73 Aligned_cols=129 Identities=10% Similarity=0.013 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 008925 310 IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN--------------VVMFTTVISGWCNAVKMQRAMSIYEKMCEIG 375 (548)
Q Consensus 310 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 375 (548)
...+..+...|.+.|++++|+..|+++++...... ...|..+..+|.+.|++++|+..++++++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34556666666667777777777766665321110 4678888889999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHH-HHHH
Q 008925 376 INPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK-STIQLVADSWRAIGLAREAKRV-LKSA 441 (548)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~-~~~~ 441 (548)
+.+...|..+..+|...|++++|+..|+++++. .|+. ..+..++.++.+.|+.++|.+. ++++
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888999999999999999999999998874 4554 4788888888888888877653 3443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-05 Score=77.17 Aligned_cols=197 Identities=7% Similarity=0.042 Sum_probs=107.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC
Q 008925 36 VAALTRQKRFKSILSLISKVEKDGMKPD----------------SILFNAMINACSESGNVDEAMKIFQKMKDSGCK-PT 98 (548)
Q Consensus 36 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 98 (548)
++.+.+.|++++|++.|..+.+...... ...+..++..|...|++++|.+.+..+...-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4555667777777777777765421110 123566777788888888888877776542101 11
Q ss_pred H----HHHHHHHHHHhccCChHHHHHHHHHhhhC----CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CC--
Q 008925 99 T----STYNTLIKGYGNVGKPEESLKLLQLMSQD----KNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVAS--GI-- 166 (548)
Q Consensus 99 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-- 166 (548)
. .+.+.+...+...|+.++|..+++..... .....-..++..++..+...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12333344444566777777776655431 111122345566666777777777777777665432 10
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 167 -QPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQ--V-RP-N--ERTCGIIVSGYCKEGNMEDAMRFLYRMK 232 (548)
Q Consensus 167 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 232 (548)
+....++..+++.|...|++++|..++++..... . .| . ...+..++..+...|++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1113456666666777777777766666554321 1 11 1 1234444555556666666666555543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.9e-05 Score=75.00 Aligned_cols=166 Identities=13% Similarity=0.029 Sum_probs=102.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHcCCChhhHHHHHHHHHHc----CCCCC-HHH
Q 008925 208 CGIIVSGYCKEGNMEDAMRFLYRMKELEVH-PNL----VVFNSLIKGFLDIKDSDGVDKALTLMEEF----GVKPD-VVT 277 (548)
Q Consensus 208 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~ 277 (548)
+..++..|...|++++|.+++.++...... ++. .+.+.+...+...|+++.+..++...... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 445556666666666666666555432100 111 12233333344556677777666654432 22222 456
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHc--CC--CC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCCC--HH
Q 008925 278 FSTIMDAWSSAGLMGKCQEIFDDMVKA--GI--EP-DIHVFSILAKGYVRAGEPQKAESILTSMRKY----GVHPN--VV 346 (548)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~ 346 (548)
+..+...+...|++++|..+++.+... +. .+ ...++..++..|...|++++|..++++.... +.++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677888888888888888888877642 11 11 2457788888899999999999888877642 11111 23
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
.+..++..+...|++++|...|.++.+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566777778888999999988888765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.1e-06 Score=64.74 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=41.0
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 008925 316 LAKGYVRAGEPQKAESILTSMRKYGVHPN-V---VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPN---LKTYETLLW 388 (548)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 388 (548)
++..+...|++++|...|+.+.+.. |+ . ..+..++.++...|++++|+..|+++++.. +.+ ...+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3444445555555555555544421 11 1 234444444445555555555555554432 222 333444444
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 008925 389 GYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~ 408 (548)
++...|++++|...|+++.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555544443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-06 Score=85.65 Aligned_cols=118 Identities=10% Similarity=-0.014 Sum_probs=81.7
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.+.+.|++++|+..|+++++..+. +..+|..++.++.+.|++++|++.++++.+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 456778888888888888876433 56778888888888888888888888887763 4456777778888888888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHH--HhccCChHHHHHHHH
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKG--YGNVGKPEESLKLLQ 123 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 123 (548)
|++.|+++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888877653 2233445555544 666777777777776
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.5e-06 Score=68.91 Aligned_cols=64 Identities=17% Similarity=0.063 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008925 381 KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
..|..+..+|.+.|++++|+..++++++.. +.+...+..++.++...|++++|+..++++.+.+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 344555555555555555555555555431 1123345555555555555555555555555443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-06 Score=81.14 Aligned_cols=151 Identities=9% Similarity=-0.018 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 275 VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISG 354 (548)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 354 (548)
...+..+...+...|++++|...|++++.. .|+... +...++.+++...+ ....|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 344556666677777777777777777765 233221 11223333332221 11367888889
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH-HHcCCHH
Q 008925 355 WCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSW-RAIGLAR 432 (548)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~-~~~g~~~ 432 (548)
|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++. .|+.. .+..+..+. ...+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875 567888999999999999999999999998763 45443 555555553 3456777
Q ss_pred HHHHHHHHHHhccCC
Q 008925 433 EAKRVLKSAEEDRQS 447 (548)
Q Consensus 433 ~A~~~~~~~~~~~~~ 447 (548)
++.+.++++....|.
T Consensus 317 ~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 317 KQKEMYKGIFKGKDE 331 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhCCCCC
Confidence 888888887755443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=6.6e-06 Score=67.22 Aligned_cols=102 Identities=12% Similarity=0.036 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKY--------G---------VHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 374 (548)
.+...+..+.+.|++++|+..|++.+.. . .+.+...|..+..+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555555555555555554432 0 0112356777888888888888888888888887
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 008925 375 GINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS 416 (548)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 416 (548)
. +.+...|..++.+|...|++++|+..|++.++. .|+..
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 5 667788888888888888888888888888774 45543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-05 Score=62.31 Aligned_cols=93 Identities=15% Similarity=0.063 Sum_probs=49.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 008925 351 VISGWCNAVKMQRAMSIYEKMCEIGINPNL---KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK----KSTIQLVAD 423 (548)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~ 423 (548)
++..+...|++++|...|+++++.. +.+. ..+..++.++...|++++|+..++++.+.. |+ ...+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 4444555566666666666555542 2222 345555555556666666666665555432 22 334555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhccC
Q 008925 424 SWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 424 ~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
++...|++++|+..++++.+..|
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC
Confidence 55566666666666665555443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.33 E-value=6.1e-06 Score=77.50 Aligned_cols=90 Identities=16% Similarity=0.067 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 008925 345 VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP-KKSTIQLVAD 423 (548)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 423 (548)
...|..+..+|.+.|++++|+..++++++.. +.+...+..+..+|...|++++|+..|+++.+. .| +...+..+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4567778888888888888888888888764 556777888888888888888888888888764 34 4456667777
Q ss_pred HHHHcCCHHHHHHH
Q 008925 424 SWRAIGLAREAKRV 437 (548)
Q Consensus 424 ~~~~~g~~~~A~~~ 437 (548)
++...++.+++.+.
T Consensus 350 ~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 350 VKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766666543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2.4e-05 Score=77.72 Aligned_cols=154 Identities=8% Similarity=0.018 Sum_probs=125.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 008925 289 GLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGE----------PQKAESILTSMRKYGVHPNVVMFTTVISGWCNA 358 (548)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 358 (548)
...++|+..++.++..+ +.+..+|+.-..++...|+ +++++..++.+.+.. +-+..+|..-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34567899999999886 6677788888877777777 899999999999864 33677898888888888
Q ss_pred C--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-------
Q 008925 359 V--KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK-QPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAI------- 428 (548)
Q Consensus 359 g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------- 428 (548)
| +++++++.++++++.. +-|..+|..-..++.+.| .+++++++++++++.. .-+...|...+.++...
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 9 6799999999999987 678899999998999999 8999999999998753 33566888888777763
Q ss_pred -------CCHHHHHHHHHHHHhccC
Q 008925 429 -------GLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 429 -------g~~~~A~~~~~~~~~~~~ 446 (548)
+.+++|+++++++.+.+|
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC
Confidence 557889988888775554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.5e-06 Score=66.57 Aligned_cols=87 Identities=11% Similarity=0.093 Sum_probs=68.0
Q ss_pred ccCChhhHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 6 GKGKPHEAHYIFNCLIEEG--HRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEA 83 (548)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 83 (548)
..|++++|+..|+++++.+ .+.+..++..++.++...|++++|+..|+++.+.. +.+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999998864 12245778888999999999999999999988874 55677888888899999999999
Q ss_pred HHHHHHHHhc
Q 008925 84 MKIFQKMKDS 93 (548)
Q Consensus 84 ~~~~~~~~~~ 93 (548)
+..|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988775
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.31 E-value=8.3e-07 Score=68.03 Aligned_cols=84 Identities=10% Similarity=-0.084 Sum_probs=36.0
Q ss_pred CCHhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 324 GEPQKAESILTSMRKYG--VHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEE 401 (548)
Q Consensus 324 g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (548)
|++++|+..|+++++.+ -+.+...+..++.+|...|++++|+..|+++++.. |.+...+..++.++...|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44444555555444421 01112334444444444444444544444444443 3334444444444444444444444
Q ss_pred HHHHHHH
Q 008925 402 LLQVMEE 408 (548)
Q Consensus 402 ~~~~~~~ 408 (548)
.+++.++
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.1e-05 Score=64.09 Aligned_cols=96 Identities=10% Similarity=-0.005 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHhccCChHHHHHHHHHHHHc------
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHP------N-----VVMFTTVISGWCNAVKMQRAMSIYEKMCEI------ 374 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 374 (548)
.+...+..+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34455566667777777777777776642110 1 237888888889999999999999998886
Q ss_pred -CCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 375 -GINPNLKTY----ETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 375 -~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
. |.+...| ...+.++...|++++|+..|++.++
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4 4455678 8899999999999999999999875
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.29 E-value=4.9e-06 Score=67.67 Aligned_cols=133 Identities=12% Similarity=0.012 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCC-CH
Q 008925 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI-EPD----IHVFSILAKGYVRAGEPQKAESILTSMRKY----GVHP-NV 345 (548)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~ 345 (548)
.++..+...+...|++++|...++++++... .++ ..++..+...+...|++++|...+++..+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4566677777788888888888877764310 011 136777888888888999888888887642 1111 13
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEI----GINP-NLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
..+..+...+...|++++|...++++++. +.++ ...++..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 46677888888899999999999888753 1111 134577788889999999999999988764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.28 E-value=9.3e-06 Score=76.27 Aligned_cols=122 Identities=11% Similarity=0.075 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH----------------cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 008925 277 TFSTIMDAWSSAGLMGKCQEIFDDMVK----------------AGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYG 340 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 340 (548)
.+..+...+.+.|++++|+..|+++++ .. +.+..+|..+..+|.+.|++++|+..++++++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 355566667777777777777777665 21 3345678889999999999999999999999864
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 341 VHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEE 401 (548)
Q Consensus 341 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (548)
+.+...+..+..+|...|++++|+..|+++++.. +.+...+..+..++...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356788899999999999999999999999875 5577778888888877777766654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.28 E-value=9.5e-06 Score=78.82 Aligned_cols=130 Identities=15% Similarity=0.044 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 008925 275 VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPD---------------IHVFSILAKGYVRAGEPQKAESILTSMRKY 339 (548)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (548)
...+..+...+.+.|++++|...|+++++.. +.+ ..+|..+..+|.+.|++++|+..++++++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4567777888888888999988888888753 333 578889999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH-HHHHHH
Q 008925 340 GVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEE-LLQVME 407 (548)
Q Consensus 340 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 407 (548)
. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..++.+.|+.+++.+ .++.|.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3367788999999999999999999999999875 5566788888888888888887764 444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.8e-05 Score=75.61 Aligned_cols=173 Identities=10% Similarity=0.015 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----------hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-
Q 008925 221 MEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKD----------SDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAG- 289 (548)
Q Consensus 221 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 289 (548)
.++|++.+++++..+ |.+..+|+.-...+...++ ++++.+.++.+.+..++ +..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 356677777776654 4445666666555555555 67777777777776544 6667777777777777
Q ss_pred -ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---------
Q 008925 290 -LMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAG-EPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA--------- 358 (548)
Q Consensus 290 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 358 (548)
++++++..++++.+.+ +.+..+|+....++.+.| .++++++.++++.+.++ -|..+|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccccc
Confidence 5588888888888776 566777777777777777 77788888877777542 3566676666555442
Q ss_pred -----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 359 -----VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWR 398 (548)
Q Consensus 359 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (548)
+.++++++++++++... |.|...|..+...+.+.+++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55788999999998875 6677888888888888777444
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.6e-06 Score=82.58 Aligned_cols=132 Identities=6% Similarity=-0.147 Sum_probs=100.8
Q ss_pred HHhccCChHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCCH-HHHH
Q 008925 354 GWCNAVKMQRAMSIYEKMCEI-----G-INPN-LKTYETLLWGYGEAKQPWRAEELLQVMEE-----KGV-RPKK-STIQ 419 (548)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~~-~~~~ 419 (548)
.+..+|++++|+.+++++++. | -.|+ ..+++.|+.+|...|++++|..++++.++ .|- .|+. .++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999998863 2 1122 35688999999999999999999998863 221 2333 3788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhccccccccccccccccccccCCCChhhhhhhhhhc
Q 008925 420 LVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEHNGSSAAKIRSQIVL 498 (548)
Q Consensus 420 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~ 498 (548)
.++.+|..+|++++|+.+++++.+......|..++...+.. ..|+..+..++++.+|+.+++++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~-------------~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLE-------------AMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998777666666655555433 2356678888889999999988855
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=4.1e-05 Score=60.33 Aligned_cols=108 Identities=13% Similarity=0.009 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHH
Q 008925 291 MGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN----AVKMQRAMS 366 (548)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 366 (548)
+++|...|++..+.+ .++.. |...|...+.+++|+..|++..+.| +...+..|...|.. .+++++|++
T Consensus 11 ~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 11 LKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 444555555554444 22222 4444444444444555555554432 33444444444444 445555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHC
Q 008925 367 IYEKMCEIGINPNLKTYETLLWGYGE----AKQPWRAEELLQVMEEK 409 (548)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 409 (548)
.|+++.+.| +...+..|...|.. .+++++|..+|++..+.
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 555555433 34444444444444 44555555555555443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.21 E-value=9.2e-06 Score=75.43 Aligned_cols=149 Identities=7% Similarity=-0.041 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 310 IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWG 389 (548)
Q Consensus 310 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (548)
...+..+...+.+.|++++|+..|+++... .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 344555666666667777777777666653 233221 223333333332221 1378889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhcccccc
Q 008925 390 YGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSAS 469 (548)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 469 (548)
|.+.|++++|+..+++.++.. +.+...+..++.++...|++++|+..++++.+.+| .+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p---------------------~~ 297 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP---------------------DD 297 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---------------------CC
Confidence 999999999999999999753 23566899999999999999999999999765443 23
Q ss_pred ccccccccccc-cccCCCChhhhhhhhhhcc
Q 008925 470 NSTFLQIPGVV-SSEHNGSSAAKIRSQIVLR 499 (548)
Q Consensus 470 ~~~~~~l~~~y-~~~~~~~~a~~~~~~~~~~ 499 (548)
...+..|+.+. ...+..+.+.++++++...
T Consensus 298 ~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 298 KAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 33444455553 3345556666666666543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.5e-06 Score=65.64 Aligned_cols=93 Identities=9% Similarity=-0.055 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------HH
Q 008925 344 NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-------KS 416 (548)
Q Consensus 344 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~ 416 (548)
+...+..++..+...|++++|+..|+++++.. +.+...+..++.++...|++++|+..++++++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 45566777777778888888888888887764 556777778888888888888888888887764 344 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 008925 417 TIQLVADSWRAIGLAREAKRVLK 439 (548)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~ 439 (548)
.+..++.++...|++++|+..++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 44555555555555555444433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00011 Score=57.75 Aligned_cols=110 Identities=12% Similarity=0.025 Sum_probs=94.6
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHH
Q 008925 324 GEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE----AKQPWRA 399 (548)
Q Consensus 324 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 399 (548)
+++++|+..|++..+.| .|+.. +...|...+.+++|++.|+++.+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46889999999999987 33433 7788888888999999999999975 77888899999988 8999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 008925 400 EELLQVMEEKGVRPKKSTIQLVADSWRA----IGLAREAKRVLKSAEED 444 (548)
Q Consensus 400 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 444 (548)
+++|++..+.| +......++..|.. .++.++|.++++++.+.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 99999999864 56788889999998 89999999999998654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.9e-05 Score=62.54 Aligned_cols=99 Identities=13% Similarity=0.044 Sum_probs=76.5
Q ss_pred cccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008925 5 VGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRF----------KSILSLISKVEKDGMKPDSILFNAMINAC 74 (548)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (548)
-+.+.+++|+..++.+++.++. +...|..++.++...+++ ++|+..|++.++.. |.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3557789999999999988654 888999899888888765 48899999888864 44677888888888
Q ss_pred HhcC-----------ChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008925 75 SESG-----------NVDEAMKIFQKMKDSGCKPTTSTYNTLIK 107 (548)
Q Consensus 75 ~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 107 (548)
...| ++++|++.|++.++. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 8764 788888888888875 566555544443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.7e-05 Score=62.85 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHCCCCCCHH
Q 008925 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK-----------QPWRAEELLQVMEEKGVRPKKS 416 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~ 416 (548)
+++|+..|+++++.. |.+..+|..+..+|...| ++++|+..|+++++. .|+..
T Consensus 62 ~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~ 125 (158)
T 1zu2_A 62 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCH
Confidence 446666666666654 445566666666666543 566666666666653 45543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=5.5e-05 Score=73.32 Aligned_cols=124 Identities=7% Similarity=-0.065 Sum_probs=72.2
Q ss_pred HHHcCCHhHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHc-----C-CCCC-HHHHHH
Q 008925 320 YVRAGEPQKAESILTSMRKY-----G-VHPN-VVMFTTVISGWCNAVKMQRAMSIYEKMCEI-----G-INPN-LKTYET 385 (548)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~ 385 (548)
+...|++++|+.++++.++. | -+|+ ..+++.|+..|...|++++|+.+++++++. | -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666665431 1 1222 235666777777777777777777766642 2 0122 234667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 386 LLWGYGEAKQPWRAEELLQVMEE---KGVRPK----KSTIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
|+..|...|++++|..+++++++ .-+-|+ ..+...+..++...|.+++|+.++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776652 111233 22444555666677777777777777763
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.99 E-value=3.3e-05 Score=58.64 Aligned_cols=77 Identities=18% Similarity=0.060 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 364 AMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
|+..|+++++.. +.+...+..++.+|...|++++|+..|++.++.. +.+...+..++.++...|++++|+..++++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444432 3334444444444445555555555554444421 1123344444445555555555555555444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=1e-05 Score=60.96 Aligned_cols=92 Identities=9% Similarity=-0.026 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC------HHHH
Q 008925 310 IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPN------LKTY 383 (548)
Q Consensus 310 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~ 383 (548)
...+..++..+...|++++|+..|+++.+.. +.+...+..++.++...|++++|+..++++++.. +.+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 3455556666666666666666666666542 2245556666666666666666666666666543 222 4445
Q ss_pred HHHHHHHHhcCChHHHHHHH
Q 008925 384 ETLLWGYGEAKQPWRAEELL 403 (548)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~ 403 (548)
..+..++...|+.++|+..+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 55555555555555554433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00011 Score=52.65 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSW 425 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 425 (548)
..+..+...+...|++++|+..|+++++.. +.+...+..+..++...|++++|...+++..+.. +.+...+..++.++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555666666666666666666543 3455556666666666666666666666665532 12233455555544
Q ss_pred HH
Q 008925 426 RA 427 (548)
Q Consensus 426 ~~ 427 (548)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.92 E-value=9.6e-05 Score=56.02 Aligned_cols=81 Identities=10% Similarity=0.141 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008925 11 HEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKM 90 (548)
Q Consensus 11 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 90 (548)
++|+..|+.+++..+. +...+..++..+...|++++|+..|++..+.. +.+...+..+..+|...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677888888776543 66778888888888888888888888887763 445667778888888888888888888877
Q ss_pred Hhc
Q 008925 91 KDS 93 (548)
Q Consensus 91 ~~~ 93 (548)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00018 Score=51.57 Aligned_cols=81 Identities=14% Similarity=0.171 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 310 IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWG 389 (548)
Q Consensus 310 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (548)
...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...|+++.+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3455666666667777777777776666542 2245566666667777777777777777776654 4455566666555
Q ss_pred HHh
Q 008925 390 YGE 392 (548)
Q Consensus 390 ~~~ 392 (548)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=5.6e-05 Score=71.95 Aligned_cols=103 Identities=12% Similarity=-0.072 Sum_probs=78.1
Q ss_pred ccCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCCHH-HHHHHH
Q 008925 357 NAVKMQRAMSIYEKMCEI---GINPN----LKTYETLLWGYGEAKQPWRAEELLQVMEE-----KGV-RPKKS-TIQLVA 422 (548)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~~~-~~~~l~ 422 (548)
..|++++|+.+++++++. -+.|+ ..+++.|+.+|...|++++|+.+++++++ .|- .|+.. ++..++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999988762 12222 35688899999999999999999998863 221 24433 788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHH
Q 008925 423 DSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVES 459 (548)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (548)
.+|..+|++++|+.+++++.++.....|..++...+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 9999999999999999999887776666666555543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00018 Score=52.89 Aligned_cols=62 Identities=15% Similarity=0.062 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008925 345 VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (548)
...+..++..|...|++++|+..|+++++.. +.+...|..++.+|...|++++|+..+++.+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444555555555555555554443 3334444444455555555555555444443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00015 Score=69.26 Aligned_cols=111 Identities=12% Similarity=0.001 Sum_probs=79.8
Q ss_pred HHHHhccCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CC-CCCCH-HH
Q 008925 352 ISGWCNAVKMQRAMSIYEKMCEI---GINPN----LKTYETLLWGYGEAKQPWRAEELLQVMEE-----KG-VRPKK-ST 417 (548)
Q Consensus 352 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~~-~~ 417 (548)
+..+...|++++|+.+++++++. -+.|+ ..+++.|+.+|...|++++|+.+++++++ .| -.|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44455678888898888888853 12222 34678888889999999999999888763 22 12333 36
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHh
Q 008925 418 IQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHR 462 (548)
Q Consensus 418 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (548)
+..++.+|..+|++++|+.+++++.++.....|..++...+.+..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~ 418 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILL 418 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 788899999999999999999998877776666666655544433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00018 Score=52.86 Aligned_cols=64 Identities=13% Similarity=0.106 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
+...+..++.+|...|++++|+..|+++.+.+ +.+...|..++.+|...|++++|++.|+++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444445555555555555555555544432 11233444455555555555555555554443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00036 Score=50.97 Aligned_cols=82 Identities=12% Similarity=0.046 Sum_probs=50.7
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHc
Q 008925 351 VISGWCNAVKMQRAMSIYEKMCEIGINPNLK-TYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWRAI 428 (548)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~ 428 (548)
.+..+...|++++|+..|+++++.. +.+.. .+..++.+|...|++++|+..|++.++. .|+.. .+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH--------
Confidence 3445566677777777777777654 44556 6777777777777777777777777764 34332 2211
Q ss_pred CCHHHHHHHHHHHHh
Q 008925 429 GLAREAKRVLKSAEE 443 (548)
Q Consensus 429 g~~~~A~~~~~~~~~ 443 (548)
+.+.+|...+++...
T Consensus 75 ~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 75 KMVMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHHHhc
Confidence 445566666655443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00014 Score=69.28 Aligned_cols=94 Identities=10% Similarity=-0.028 Sum_probs=71.5
Q ss_pred hcCChHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhc
Q 008925 392 EAKQPWRAEELLQVMEE---KGVRPK----KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQ 464 (548)
Q Consensus 392 ~~g~~~~A~~~~~~~~~---~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (548)
..|++++|+.++++.++ .-+.|+ ..++..++.+|...|++++|+.+++++++......+..++..+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a------- 382 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA------- 382 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH-------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH-------
Confidence 46899999999998874 222333 3478899999999999999999999988666555444444443
Q ss_pred cccccccccccccccccccCCCChhhhhhhhhhc
Q 008925 465 NLSASNSTFLQIPGVVSSEHNGSSAAKIRSQIVL 498 (548)
Q Consensus 465 ~~~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~ 498 (548)
..+..||.+|..+|++++|+.+.++.+.
T Consensus 383 ------~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 383 ------SMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp ------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3445588899999999999998887644
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0031 Score=57.53 Aligned_cols=71 Identities=11% Similarity=0.022 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 008925 344 NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTI 418 (548)
Q Consensus 344 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 418 (548)
+..++..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.++++... .|...++
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 34445544444444456666666666665543 45555555555555566666666666555542 3444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0018 Score=50.69 Aligned_cols=87 Identities=11% Similarity=0.097 Sum_probs=60.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHH
Q 008925 360 KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK---QPWRAEELLQVMEEKGVRP--KKSTIQLVADSWRAIGLAREA 434 (548)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 434 (548)
....+.+.|.+..+.+ +++..+...+.+++++++ +.++++.++++..+.. .| ..+.+..++-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455666666666655 567777777778888777 5557888887777643 24 244666777777888888888
Q ss_pred HHHHHHHHhccCCC
Q 008925 435 KRVLKSAEEDRQSM 448 (548)
Q Consensus 435 ~~~~~~~~~~~~~~ 448 (548)
+++++.+++.+|..
T Consensus 91 ~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCCC
Confidence 88888887776644
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00054 Score=65.35 Aligned_cols=99 Identities=9% Similarity=-0.062 Sum_probs=74.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHH
Q 008925 387 LWGYGEAKQPWRAEELLQVMEEK---GVRPK----KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVES 459 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (548)
+..+...|++++|+.++++.++. -+.|+ ..++..++.+|...|++++|+.+++++++......+..++..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~--- 370 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR--- 370 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH---
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH---
Confidence 44566789999999999999853 12233 347888999999999999999999998766554444434333
Q ss_pred HHhhccccccccccccccccccccCCCChhhhhhhhhhc
Q 008925 460 IHRKQNLSASNSTFLQIPGVVSSEHNGSSAAKIRSQIVL 498 (548)
Q Consensus 460 l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~ 498 (548)
+..+..||.+|..+|++++|+.+.++.+.
T Consensus 371 ----------a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 371 ----------GVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33455588889999999999998876643
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0085 Score=54.68 Aligned_cols=65 Identities=14% Similarity=0.002 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 168 PDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKEL 234 (548)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 234 (548)
.+..+|..+...+...|++++|...+++++..+ |+...+..+...+.-.|++++|.+.|+++...
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344455444444444455555555555555443 34444444555555555555555555555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0073 Score=43.21 Aligned_cols=64 Identities=6% Similarity=-0.073 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHhccCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 344 NVVMFTTVISGWCNAVK---MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 344 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
|...+..+..++...++ .++|..+++++++.. |.+......++..+...|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444555544433222 456666666666554 44555555555666666666666666666554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.014 Score=41.66 Aligned_cols=69 Identities=10% Similarity=-0.044 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 377 NPNLKTYETLLWGYGEAKQ---PWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
++|...+..+..++...++ .++|..++++.++. .|+ ...+..++..+...|++++|+..|+++.+.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 6788888899988875555 79999999999985 455 558888899999999999999999999977766
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.01 Score=42.96 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=31.3
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHc
Q 008925 317 AKGYVRAGEPQKAESILTSMRKYGVHPNVV-MFTTVISGWCNAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 374 (548)
+..+...|++++|+..++++.+.. +.+.. .+..++.++...|++++|+..|+++++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344555566666666666555532 12334 5555555566666666666666666554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.008 Score=46.99 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=66.8
Q ss_pred cccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCC
Q 008925 5 VGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQK---RFKSILSLISKVEKDGMKP--DSILFNAMINACSESGN 79 (548)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 79 (548)
...+....+.+-|.+..+.+. ++..+...+.-++++++ ++++++.+|+...+.+ .| +...+..|.-+|.+.|+
T Consensus 9 l~~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 9 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccC
Confidence 344556677777887777655 57888888888888877 6668899998888764 23 34456667777889999
Q ss_pred hHHHHHHHHHHHhcCCCCC
Q 008925 80 VDEAMKIFQKMKDSGCKPT 98 (548)
Q Consensus 80 ~~~A~~~~~~~~~~~~~~~ 98 (548)
+++|++.++.+++. +|+
T Consensus 87 Y~~A~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 87 YEKALKYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHHhc--CCC
Confidence 99999999998885 454
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.012 Score=43.19 Aligned_cols=63 Identities=8% Similarity=-0.137 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEIG------INPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
.-+..++..+...|++..|...|+++++.. -.+....+..|..++.+.|++++|..+++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334445555555555555555555554420 012234445555555555555555555555544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.098 Score=42.00 Aligned_cols=99 Identities=18% Similarity=0.230 Sum_probs=51.7
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHH
Q 008925 40 TRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESL 119 (548)
Q Consensus 40 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 119 (548)
.+.|+++.|.++.+.+ .+...|..|.......|+++-|..+|.+... +..+.-.|...|+.+.-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 4456666666665544 2455666666666666666666666666542 233444444555555544
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008925 120 KLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYK 160 (548)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 160 (548)
++-+.....+ -++.....+.-.|+++++.++|.+
T Consensus 81 kla~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4443332221 133334444555666666666544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.11 Score=54.33 Aligned_cols=152 Identities=11% Similarity=0.100 Sum_probs=86.0
Q ss_pred HccCCHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHH
Q 008925 40 TRQKRFKSILS-LISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEES 118 (548)
Q Consensus 40 ~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 118 (548)
...++++.|.+ ++.. ++ +......++..+.+.|..+.|+++.+... . -.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~---------~---~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQD---------Q---KFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH---------H---HHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCcc---------h---heehhhhcCCHHHH
Confidence 35677777766 4421 11 12223666667777777777776543211 1 12234456778887
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 119 LKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQN 198 (548)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 198 (548)
.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++.+....
T Consensus 672 ~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 672 RDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 7765433 3567777888888888888888888877632 33444455556666665555554444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008925 199 NQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRM 231 (548)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 231 (548)
.+. ++....+|.+.|++++|++++.++
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 321 222333455566666666655443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.012 Score=44.10 Aligned_cols=87 Identities=10% Similarity=0.065 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHH
Q 008925 360 KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWR---AEELLQVMEEKGVRP--KKSTIQLVADSWRAIGLAREA 434 (548)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 434 (548)
....+.+-|.+....| .++..+-..+.+++.++..... ++.+++.....+ .| ....+..++-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445555666665555 4677777777777777776655 777777766542 23 233555667777788888888
Q ss_pred HHHHHHHHhccCCC
Q 008925 435 KRVLKSAEEDRQSM 448 (548)
Q Consensus 435 ~~~~~~~~~~~~~~ 448 (548)
+++++.+++..|..
T Consensus 94 ~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 94 LKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCCC
Confidence 88888777666543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.032 Score=40.84 Aligned_cols=66 Identities=11% Similarity=0.027 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 008925 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKYG------VHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 374 (548)
+..-+..|+..+...|+++.|...|+.+.+.- -.+....+..+..++.+.|++++|..+++++++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445556666666666666666666555420 0123445666666666777777777777776664
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.027 Score=49.21 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHc-C
Q 008925 361 MQRAMSIYEKMCEIGINPN---LKTYETLLWGYGE-----AKQPWRAEELLQVMEEKGVRPK--KSTIQLVADSWRAI-G 429 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~-g 429 (548)
...|...++++++. .|+ ...|..|+..|.. -|+.++|.++|++.++. .|+ ..+...+++.+++. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 45566666666664 344 3456666666666 36666677777666663 342 44555666666653 6
Q ss_pred CHHHHHHHHHHHHhccCC
Q 008925 430 LAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 430 ~~~~A~~~~~~~~~~~~~ 447 (548)
+.++|.++++++...++.
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 666666666666655544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.16 E-value=1.5 Score=45.46 Aligned_cols=158 Identities=16% Similarity=0.130 Sum_probs=71.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhCC
Q 008925 212 VSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVT--FSTIMDAWSSAG 289 (548)
Q Consensus 212 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 289 (548)
+..+...|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+.+.+.... .|.... ...+.-+|+..|
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSC
T ss_pred hhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCC
Confidence 344455566666666665555421 1122222333333445566666666666665531 122111 112334455666
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh-HHHHHHH
Q 008925 290 LMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKM-QRAMSIY 368 (548)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~ 368 (548)
+......++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .+++.++
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 6665555666665431 1222222222233344555555566665555432 23333222233333333332 4566666
Q ss_pred HHHHH
Q 008925 369 EKMCE 373 (548)
Q Consensus 369 ~~~~~ 373 (548)
..+..
T Consensus 653 ~~L~~ 657 (963)
T 4ady_A 653 DPLTK 657 (963)
T ss_dssp HHHHT
T ss_pred HHHcc
Confidence 66654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.3 Score=51.06 Aligned_cols=27 Identities=4% Similarity=-0.134 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHh
Q 008925 99 TSTYNTLIKGYGNVGKPEESLKLLQLM 125 (548)
Q Consensus 99 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 125 (548)
...|..+...+.+.|+++.|++.|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344444555555555555555444444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.16 Score=40.71 Aligned_cols=130 Identities=13% Similarity=0.080 Sum_probs=80.6
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 008925 283 DAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQ 362 (548)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 362 (548)
......|+++.|.++.+.+ .+...|..|.......|+++-|...|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445778888888876654 4677888888888888888888888877643 333444455567776
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 363 RAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
.-.++-+.+...| + ++.-...+.-.|++++++++|.+.-+ .|... -.....|..+.|.++.+++.
T Consensus 78 ~L~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 78 KLSKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 6665555555544 1 33334455567888888887754321 12111 11123567777777777654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.073 Score=46.56 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-CCh
Q 008925 291 MGKCQEIFDDMVKAGIEPD---IHVFSILAKGYVRA-----GEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA-VKM 361 (548)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~ 361 (548)
...|...++++++. .|+ ...|..|+..|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34566667777666 344 44677777777773 77777777777777743211356666677777663 777
Q ss_pred HHHHHHHHHHHHcCCC
Q 008925 362 QRAMSIYEKMCEIGIN 377 (548)
Q Consensus 362 ~~A~~~~~~~~~~~~~ 377 (548)
++|.+++++++.....
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777775433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.4 Score=36.08 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=27.0
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 008925 316 LAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIG 375 (548)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 375 (548)
.+..+...|.-+.-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++.+.|
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 334444444444444444443221 23444444445555555555555555555555444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.79 E-value=2.5e-06 Score=79.00 Aligned_cols=201 Identities=15% Similarity=0.154 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 008925 66 LFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAW 145 (548)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (548)
.|..|..++...++..+|++.|=+. .|+..|..++.+..+.|.+++-++++.-.++. ..++..=+.|+-+|
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ay 126 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFAL 126 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHHH
Confidence 4666666666666666665544322 13344556666666666666666655544332 22333334566666
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------------CCCCCH
Q 008925 146 CSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNN--------------------QVRPNE 205 (548)
Q Consensus 146 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------------~~~~~~ 205 (548)
++.++..+..+++. .|+..-...+++-|...|.++.|.-+|..+..- .-.-++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 66666544332221 244444555556666666665555544433211 001234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 206 RTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAW 285 (548)
Q Consensus 206 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 285 (548)
.||..+-.+|...+++.-|.-+--.++- .++ -...++..|-..|-+++.+.+++...... ......|+-|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence 5555555555555555544433222221 111 11223444555556666555555544321 33455555555555
Q ss_pred HhC
Q 008925 286 SSA 288 (548)
Q Consensus 286 ~~~ 288 (548)
++-
T Consensus 274 sKY 276 (624)
T 3lvg_A 274 SKF 276 (624)
T ss_dssp HSS
T ss_pred Hhc
Confidence 544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.14 Score=38.33 Aligned_cols=65 Identities=9% Similarity=-0.064 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHhccCChHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 343 PNVVMFTTVISGWCNAVKMQR---AMSIYEKMCEIGINP--NLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 343 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
|+..+-..+..++.+..+..+ ++.+++...+.+ .| .....-.|.-++.+.|++++|.++++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444443333 444444444432 12 122333444455555555555555555554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.22 Score=38.44 Aligned_cols=101 Identities=10% Similarity=-0.050 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHHcCCH------hHHHHHHHHHHhCCCCCCHH-HHHHHHHH------HhccCChHHHHHHHHHHHHc
Q 008925 308 PDIHVFSILAKGYVRAGEP------QKAESILTSMRKYGVHPNVV-MFTTVISG------WCNAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~p~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~~~ 374 (548)
.|..+|...+...-+.|++ ++..++|+++... ++|+.. .|...+.. +...++.++|.++|+.++..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3455555555555555555 5555555555543 333311 11111111 11224555555555555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008925 375 GINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKG 410 (548)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 410 (548)
. .-=...|.....--.+.|+..+|.+++.+.+..+
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 1 1113444444444455555555555555555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.67 Score=34.94 Aligned_cols=62 Identities=11% Similarity=-0.003 Sum_probs=29.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008925 348 FTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKG 410 (548)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 410 (548)
.+..+..+..+|+-++-.+++..++.. .+|++..+..+..+|.+.|+..+|.+++.++-+.|
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 334444444455555544444443322 24445555555555555555555555555554444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.10 E-value=3.8 Score=42.61 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=23.3
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHhHHHHHHHHHHh
Q 008925 286 SSAGLMGKCQEIFDDMVKAGIEPDIHV--FSILAKGYVRAGEPQKAESILTSMRK 338 (548)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (548)
...|+.+.+..+.+.+.... .|.... ...+.-+|+..|+.....+++..+.+
T Consensus 535 l~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 535 INYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred hhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 34555555555555554421 111111 11233344555555544445555554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.25 Score=38.12 Aligned_cols=24 Identities=17% Similarity=-0.000 Sum_probs=9.7
Q ss_pred HHHHHcCCChhhHHHHHHHHHHcC
Q 008925 247 IKGFLDIKDSDGVDKALTLMEEFG 270 (548)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~~~~~ 270 (548)
.+.-.+.|+...|.+++......+
T Consensus 101 AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 101 AQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHhccC
Confidence 333333444444444444444433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.07 E-value=0.0095 Score=55.77 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=43.2
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.++.|+..+|++.|-++ .|+..|..++.+..+.|.+++-+..+.-..+. ..++.+=+.|+-+|++.++..+
T Consensus 64 qL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~e 134 (624)
T 3lvg_A 64 QLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAE 134 (624)
T ss_dssp TTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSST
T ss_pred HHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHH
Confidence 34455666666555422 24455677777777888888877777655543 2233444567777777776554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.03 E-value=4.2 Score=38.71 Aligned_cols=50 Identities=10% Similarity=0.190 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 008925 43 KRFKSILSLISKVEKD-----GMKPDSILFNAMINACSESGNVDEAMKIFQKMKD 92 (548)
Q Consensus 43 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 92 (548)
|+++.|++.+..+.+. +..........++..|...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6677777766555432 2233455667777777777777777666655543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.95 E-value=1.5 Score=33.59 Aligned_cols=72 Identities=11% Similarity=0.154 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 377 NPNLKTYETLLWGYGEAKQPW---RAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
.|+..+-..+.+++.++...+ +++.+++.+...+..-..+.+..++-++.+.|++++|+++.+.+++..|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 566777677777777766543 567777777654211123455566777778888888888888777666543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.64 E-value=0.86 Score=34.35 Aligned_cols=72 Identities=11% Similarity=0.163 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 377 NPNLKTYETLLWGYGEAKQP---WRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
.|+..+--.+.+++.++.+. .+++.+++++.+.+..-..+.+..++-++.+.|++++|+++.+.+++..|..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 56777777777777777654 3577777777764311124466667777888888888888888877666543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.67 Score=43.34 Aligned_cols=77 Identities=10% Similarity=0.024 Sum_probs=60.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCCHHHHHHHH
Q 008925 348 FTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME-----EKGVRPKKSTIQLVA 422 (548)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~l~ 422 (548)
...++..+...|++.+|+..++.+.... |-+...+..++.++.+.|+..+|++.|++.. +.|+.|+..+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4456677778899999999888888765 6688889999999999999999999988864 468889887665443
Q ss_pred HHH
Q 008925 423 DSW 425 (548)
Q Consensus 423 ~~~ 425 (548)
.++
T Consensus 253 ~il 255 (388)
T 2ff4_A 253 RIL 255 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.87 Score=46.20 Aligned_cols=54 Identities=9% Similarity=-0.240 Sum_probs=41.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 387 LWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
+.-|...|+++-|+++-++.... .|+ ..+|..|+.+|...|+++.|+-.+..++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44566778888888888888764 454 5688888888888888888888888875
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.49 Score=37.31 Aligned_cols=126 Identities=10% Similarity=0.141 Sum_probs=69.3
Q ss_pred cccccCChhhHHHHHHHHHHCC-CCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEG-HRPTL-------ITYTTLVAALTRQKRFKSILSLISKVEKD--GMKPDSILFNAMIN 72 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~ 72 (548)
.+...|.++.|+.+.+.++... ..|+. .++..++.++...|+|.+|...|++.+.. .+..+..+...+.
T Consensus 29 ~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~- 107 (167)
T 3ffl_A 29 DMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG- 107 (167)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------------
T ss_pred HHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc-
Confidence 4567788888888888765531 12231 35677788888999999999999886432 1111111111110
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 008925 73 ACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRA 144 (548)
Q Consensus 73 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (548)
....... ......+...---+..+|.+.+++++|+.+++.++.. ..+...-..|.+.
T Consensus 108 ---~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k---~Rt~kvnm~LakL 164 (167)
T 3ffl_A 108 ---NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR---QRTPKINMLLANL 164 (167)
T ss_dssp ---------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG---GCCHHHHHHHHHH
T ss_pred ---ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch---hcCHHHHHHHHHH
Confidence 0000000 0011234455555778888888888888888887553 3444444444443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.97 E-value=1.8 Score=44.02 Aligned_cols=52 Identities=12% Similarity=0.013 Sum_probs=38.5
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008925 354 GWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVM 406 (548)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (548)
.|...|+++-|+++-++++..- |.+..+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3456777888888888877763 555677888888888888888887777665
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.73 E-value=1.9 Score=32.49 Aligned_cols=72 Identities=8% Similarity=0.005 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008925 342 HPNVVMFTTVISGWCNAV---KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK 415 (548)
Q Consensus 342 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 415 (548)
.|+..+-..+..++.+.. +..+++.+++.+.+.+..-....+-.|.-++.+.|++++|.++.+.+++. .|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 456666555666665544 34567777777776541113455666777788888888888888887763 5653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.73 E-value=1.5 Score=40.96 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh----CCCCCCCHHH
Q 008925 68 NAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQ----DKNVKPNDRT 137 (548)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~ 137 (548)
..++..+...|++++|+..+..+.... +-+...+..++.++.+.|+..+|++.|+.+.+ +-|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344555556666666666666555442 33555666666666666666666666555432 2245555544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.16 E-value=7.3 Score=42.37 Aligned_cols=23 Identities=4% Similarity=-0.050 Sum_probs=12.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHh
Q 008925 103 NTLIKGYGNVGKPEESLKLLQLM 125 (548)
Q Consensus 103 ~~l~~~~~~~g~~~~A~~~~~~~ 125 (548)
-.++.++...|++++|.+.|.+.
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Confidence 34445555555666666555544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.93 E-value=1.6 Score=34.39 Aligned_cols=134 Identities=10% Similarity=0.028 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDG-MKPD-------SILFNAMINACSESGNVDEAMKIFQKMKDS--GCKPTT 99 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 99 (548)
.++..-+..+...|.++.|+-+.+.+.... ..|+ ..++..+.+++...|++..|...|++.++. .+..+.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345555777888899999988888765321 1233 135667778888999999999999997543 111111
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008925 100 STYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARA 179 (548)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 179 (548)
.+...+. ....... ......+...-.-+..+|.+.+++++|+.+++.+... ..+..+--.|.+.
T Consensus 101 s~~~~~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k--~Rt~kvnm~LakL 164 (167)
T 3ffl_A 101 KVRPSTG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR--QRTPKINMLLANL 164 (167)
T ss_dssp ------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG--GCCHHHHHHHHHH
T ss_pred Ccccccc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch--hcCHHHHHHHHHH
Confidence 1111110 0000000 0012334455556888999999999999999987654 2344444444443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=90.59 E-value=15 Score=36.60 Aligned_cols=322 Identities=11% Similarity=0.016 Sum_probs=146.4
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 008925 74 CSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEE 153 (548)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (548)
..+.|+++.+..+...+...-+. .-..|..+...+ .....++...++.+... .+.....-...+..+.+.+++..
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~---~p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPT---LPPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHhCCCHHH
Confidence 34567787777776665432111 111233332222 12245555555554422 22223334555566667777776
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHHH
Q 008925 154 AWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMED--AMRFLYRM 231 (548)
Q Consensus 154 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~ 231 (548)
.+.++.. .+.+...-.....+....|+..+|....+.+=..+.. .+..+..++..+.+.|.... ...=++.+
T Consensus 91 ~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~~R~~~a 164 (618)
T 1qsa_A 91 LLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYLERIRLA 164 (618)
T ss_dssp HHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 6664443 1334444445666677778877776666655444322 34455555555554443222 22222222
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 008925 232 KELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDV-VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDI 310 (548)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 310 (548)
...|+...|..+...+ .++. .....++..... ...+...... . .++.
T Consensus 165 -------------------l~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~---p~~~~~~~~~---~--~~~~ 212 (618)
T 1qsa_A 165 -------------------MKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTFART---T--GATD 212 (618)
T ss_dssp -------------------HHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHHHHH---S--CCCH
T ss_pred -------------------HHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhC---hHhHHHHHhc---c--CCCh
Confidence 2233333333332211 1121 111222222111 1222211111 1 2222
Q ss_pred H---HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHH----HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHH
Q 008925 311 H---VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVM----FTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTY 383 (548)
Q Consensus 311 ~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 383 (548)
. .+..-+.-+.+ .+++.|...+....+.. ..+... +..++......+...++...+.+.... .++....
T Consensus 213 ~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 288 (618)
T 1qsa_A 213 FTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLI 288 (618)
T ss_dssp HHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHH
T ss_pred hhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHH
Confidence 2 11111222222 36777777777665422 122221 222333333444344555555554442 2343333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 384 ETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
.-.+....+.|+++.|...|+.|..... .......=++.++...|+.++|..+++++..
T Consensus 289 e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 289 ERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3344444566788888887777654211 1222233345666777888888887777654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.32 E-value=15 Score=39.89 Aligned_cols=147 Identities=12% Similarity=0.008 Sum_probs=101.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CC--------------
Q 008925 280 TIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKY----GV-------------- 341 (548)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-------------- 341 (548)
.++..+...+..+.+.++..-. +.++...-.++.+|...|++++|...|++.-.. +.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3455566667776665543321 445555567788999999999999999876311 00
Q ss_pred ----CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 008925 342 ----HPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL----KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP 413 (548)
Q Consensus 342 ----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 413 (548)
..-..-|..++..+.+.+.++.++++-+.+++..-+.+. ..|..+.+.+...|++++|...+-.+.... -
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~ 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--L 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--H
Confidence 001123567788888899999999998888875322222 247788999999999999999998877543 3
Q ss_pred CHHHHHHHHHHHHHcCCHHH
Q 008925 414 KKSTIQLVADSWRAIGLARE 433 (548)
Q Consensus 414 ~~~~~~~l~~~~~~~g~~~~ 433 (548)
-...+..++..++..|..++
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 35677778877777776554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.82 E-value=7.7 Score=29.66 Aligned_cols=72 Identities=8% Similarity=0.005 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHhccCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008925 342 HPNVVMFTTVISGWCNAVK---MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK 415 (548)
Q Consensus 342 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 415 (548)
.|+..+-..+..++.+..+ ..+++.+++.....+........-.|.-++.+.|++++|.++.+.+++. .|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 4566666666666665443 5567778887776531123345556777888888888888888888873 5653
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=87.80 E-value=23 Score=35.18 Aligned_cols=52 Identities=6% Similarity=-0.209 Sum_probs=36.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 387 LWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
+..+...|....|...|..+.+. .+......++......|.++.++....+.
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 45567788888898888887753 33444455666777888888887666543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.62 E-value=19 Score=34.09 Aligned_cols=94 Identities=11% Similarity=0.061 Sum_probs=51.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHH
Q 008925 139 NILVRAWCSKNSIEEAWNVVYKMVASGIQP-D----AVTYNTLARAYAQYGETYRAEQMLFEMQN----NQVRPN--ERT 207 (548)
Q Consensus 139 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~ 207 (548)
..|...+...|++.+|.+++..+...-... + ...+...++.|...+++.+|..+++++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 445566666677777766666654321111 1 23445556667777777777776666532 111111 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 208 CGIIVSGYCKEGNMEDAMRFLYRMK 232 (548)
Q Consensus 208 ~~~l~~~~~~~g~~~~A~~~~~~~~ 232 (548)
+...+..+...+++.+|-+.|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4445556666677777766666554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.51 E-value=3.1 Score=29.46 Aligned_cols=62 Identities=18% Similarity=0.358 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008925 45 FKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIK 107 (548)
Q Consensus 45 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 107 (548)
.=+..+-++.+....+-|++.+..+.+.+|.+.+++..|.++|+-++..- .....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 33555666666666677777777777777777777777777777776541 223344555543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.67 E-value=5.8 Score=34.20 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=35.7
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 008925 38 ALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDS 93 (548)
Q Consensus 38 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (548)
.+.+.|+++.+++....-++.. |-|...-..|+..++-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3455666777776666666653 556666666777777777777777766666554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.92 E-value=8.4 Score=27.31 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008925 364 AMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (548)
..+-++.+....+-|++....+.+++|.+.+++.-|+++|+-.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=82.58 E-value=23 Score=30.55 Aligned_cols=118 Identities=13% Similarity=0.061 Sum_probs=65.7
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCC
Q 008925 320 YVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL----KTYETLLWGYGEAKQ 395 (548)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~ 395 (548)
..+.|++++|+.....-++.. +-|...-..++..+|-.|+++.|.+-++...+. .|+. ..|..++.+-.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE~---- 79 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQ---- 79 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHH----
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHHH----
Confidence 445666777776666655543 234555566666777777777777777766664 2332 23333333211
Q ss_pred hHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhccCCCCC
Q 008925 396 PWRAEELLQVMEEKGVR-----PKKSTIQLVADSW--RAIGLAREAKRVLKSAEEDRQSMPN 450 (548)
Q Consensus 396 ~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~ 450 (548)
.=.+...-+-. ........++.++ ...|+.++|..+-.++.+..|.+++
T Consensus 80 ------~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 80 ------ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ------HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ------HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 11111111111 2233444555554 4569999999999998877766664
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.58 E-value=15 Score=27.69 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=19.1
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008925 367 IYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (548)
-++.+...++-|++......+++|.+.+++.-|+++|+-.+
T Consensus 75 glN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 75 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.19 E-value=11 Score=35.63 Aligned_cols=98 Identities=10% Similarity=-0.014 Sum_probs=50.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhhCC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHH--HH
Q 008925 101 TYNTLIKGYGNVGKPEESLKLLQLMSQDK-NVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVAS---GIQPDAVT--YN 174 (548)
Q Consensus 101 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~--~~ 174 (548)
+...+...|.+.|++++|.+.|.++.... +...-...+...++.+...+++..+...+.++... +-.++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 44556666666666666666666664421 11222445556666666666666666666665322 21121111 01
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 175 TLARAYAQYGETYRAEQMLFEMQN 198 (548)
Q Consensus 175 ~l~~~~~~~g~~~~a~~~~~~~~~ 198 (548)
.-+..+...+++..|.+.|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112223456677777666665544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=80.87 E-value=31 Score=30.95 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 008925 308 PDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAV 359 (548)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 359 (548)
-|+.....+...|.+.+++.+|...|= . |-.+....+..++.-+...+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhc
Confidence 466777778888888888888877762 2 22333456655555444433
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.60 E-value=13 Score=26.25 Aligned_cols=78 Identities=15% Similarity=0.046 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 008925 79 NVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVV 158 (548)
Q Consensus 79 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 158 (548)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+.. ..||...|.+|.. .+.|..+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 45566666666555431 1111222234455667777776655444 2466666655543 3566666666666
Q ss_pred HHHHHCC
Q 008925 159 YKMVASG 165 (548)
Q Consensus 159 ~~~~~~~ 165 (548)
..+-.+|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 6666554
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.31 E-value=22 Score=33.47 Aligned_cols=98 Identities=12% Similarity=0.032 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHH--
Q 008925 136 RTYNILVRAWCSKNSIEEAWNVVYKMVASGIQ--PDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQ-VRPNERTCGI-- 210 (548)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~-- 210 (548)
.+...++..|.+.|++++|.+.|.++...-.. .-...+-.+++.+...+++..+...+.++.... -.++....+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35667788888888888888888887764222 224566677778888888888887777764321 0112221111
Q ss_pred --HHHHHHhcCCHHHHHHHHHHHHh
Q 008925 211 --IVSGYCKEGNMEDAMRFLYRMKE 233 (548)
Q Consensus 211 --l~~~~~~~g~~~~A~~~~~~~~~ 233 (548)
-+..+...+++..|...|-++..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 12223446677777666665543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.07 E-value=13 Score=26.19 Aligned_cols=78 Identities=13% Similarity=0.020 Sum_probs=37.6
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 008925 79 NVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVV 158 (548)
Q Consensus 79 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 158 (548)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+... .||...|.+|... +.|..+++...+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHH--hcccHHHHHHHH
Confidence 44555555555544321 11111122334555666666665554442 4555555555432 445555555555
Q ss_pred HHHHHCC
Q 008925 159 YKMVASG 165 (548)
Q Consensus 159 ~~~~~~~ 165 (548)
..+-.+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 5555444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 548 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.003
Identities = 40/371 (10%), Positives = 101/371 (27%), Gaps = 19/371 (5%)
Query: 38 ALTRQKRFKSILSLISKVEKDGMKPDSI-LFNAMINACSESGNVDEAMKIFQKMKDSGCK 96
+ F++ ++ + +PD+ + + + + +D +
Sbjct: 8 REYQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 97 PTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWN 156
+ N GNV K L+ + D + A + +
Sbjct: 66 LAEAYSN-----LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 157 VVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYC 216
V + A PD + + + + + +
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 217 KEGNMEDAMRFLYRMKELEVHPNLV-VFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDV 275
+G + A+ + K + + PN + + +L + + D A
Sbjct: 181 AQGEIWLAIH--HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237
Query: 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDI-HVFSILAKGYVRAGEPQKAESILT 334
V + + GL+ + + ++ ++P + LA G +AE
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 335 SMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINP-NLKTYETLLWGYGEA 393
+ + + ++ A+ +Y K E + P + L +
Sbjct: 296 TALRLCPTHADSLNNLANI-KREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQ 352
Query: 394 KQPWRAEELLQ 404
+ A +
Sbjct: 353 GKLQEALMHYK 363
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 548 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.73 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.71 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.45 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.41 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.36 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.35 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.32 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.3 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.3 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.25 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.24 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.23 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.92 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.83 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.83 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.82 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.79 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.79 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.77 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.7 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.7 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.7 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.66 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.63 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.61 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.57 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.51 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.51 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.42 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.34 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.29 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.28 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.27 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.26 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.23 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.22 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.15 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.14 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.13 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.07 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.01 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.93 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.92 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.91 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.87 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.86 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.84 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.74 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.59 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.45 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.37 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.14 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.04 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.03 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.56 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.53 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.53 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.41 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.81 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.1 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.9e-24 Score=205.52 Aligned_cols=383 Identities=10% Similarity=0.049 Sum_probs=263.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC
Q 008925 35 LVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGK 114 (548)
Q Consensus 35 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 114 (548)
++..+.+.|++++|++.++++.+.. |.+...+..+...|.+.|++++|+..|+++++.. +.+..++..++.+|...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 3444555666666666666665542 3345566666666666666666666666665542 2345566666666666666
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008925 115 PEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLF 194 (548)
Q Consensus 115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 194 (548)
+++|+..+....... +.+..............+....+........... .................+....+...+.
T Consensus 83 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ccccccccccccccc--cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHH
Confidence 666666666665532 3333444444444444444444444444443332 2334444445555566666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCC
Q 008925 195 EMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPD 274 (548)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 274 (548)
......+. +...+..+...+...|++++|...+++.+... +.+..++..+...+...|++++|...+........ .+
T Consensus 160 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~ 236 (388)
T d1w3ba_ 160 KAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NH 236 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TC
T ss_pred HhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hH
Confidence 66554332 56666777777778888888888888777653 44567778888888888888888888888777653 35
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 275 VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISG 354 (548)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 354 (548)
...+..+..++...|++++|...|+++++.. +.+..++..++.++...|++++|...++...... +.+...+..++..
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHH
Confidence 6677778888888888888988888888775 5667788888888888899999999888887753 4466778888888
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 008925 355 WCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGL 430 (548)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 430 (548)
+...|++++|+..|+++++.. |.+..++..++.+|...|++++|+..|+++++. .|+ ...+..++.++.+.|+
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 888899999999999888764 556778888888899999999999999888874 565 4578888888887775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.1e-24 Score=207.25 Aligned_cols=381 Identities=13% Similarity=0.045 Sum_probs=322.6
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.+.+.|++++|++.|+++++..+. +..++..++.++.+.|++++|+..|+++.+.. |.+..++..+..+|.+.|++++
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 356889999999999999987543 78899999999999999999999999998874 5567899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMV 162 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 162 (548)
|+..+....... +.+..............+....+.......... ..................+....+...+.+..
T Consensus 86 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccc-ccccccccccccccccccccccccccccccccc--ccccccccccccccccccchhhhhHHHHHHhh
Confidence 999999998874 445555666666666666666666666555443 24455666667777788889999999888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008925 163 ASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVV 242 (548)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 242 (548)
... +.+...+..+...+...|++++|...++...+..+. +..++..+...+...|++++|+..+++..... +.+...
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 764 456788888999999999999999999998876443 67888999999999999999999999998765 566788
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008925 243 FNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR 322 (548)
Q Consensus 243 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (548)
+..+...+...|++++|...++++.+..+ .+..++..+..++...|++++|...++.+.... +.+...+..+...+..
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHH
Confidence 88899999999999999999999998753 367888999999999999999999999998875 7788899999999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008925 323 AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQ 395 (548)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (548)
.|++++|+..|+++.+.. +-+..++..++.++...|++++|+..|+++++.. |.+..+|..|+.+|.+.||
T Consensus 318 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 999999999999998853 2346688999999999999999999999999864 5567889999999988875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.5e-15 Score=139.58 Aligned_cols=224 Identities=10% Similarity=0.040 Sum_probs=119.1
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEA 83 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 83 (548)
+.+.|++++|+..|+.+++..+. +..+|..++.++...|++++|+..|+++.+.. |.+...+..+...|...|++++|
T Consensus 29 ~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A 106 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQA 106 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccccccc
Confidence 45666777777777777665433 55666666777777777777777777666553 33455666666666777777777
Q ss_pred HHHHHHHHhcCCCCCHHH----------------HHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh
Q 008925 84 MKIFQKMKDSGCKPTTST----------------YNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCS 147 (548)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (548)
.+.++.+.... |+... ....+..+...+...+|...|.+.........+...+..+...+..
T Consensus 107 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 184 (323)
T d1fcha_ 107 CEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 184 (323)
T ss_dssp HHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred ccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 77776665531 11100 0011111222334445555555444332222334445555555555
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008925 148 KNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRF 227 (548)
Q Consensus 148 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 227 (548)
.|++++|+..|++.+... +.+..+|..++.++...|++++|.+.|+++.+..+. +..++..++.+|.+.|++++|+..
T Consensus 185 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~ 262 (323)
T d1fcha_ 185 SGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEH 262 (323)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHHHHHH
Confidence 555555555555554432 223445555555555555555555555555443222 344455555555555555555555
Q ss_pred HHHHHh
Q 008925 228 LYRMKE 233 (548)
Q Consensus 228 ~~~~~~ 233 (548)
|+++++
T Consensus 263 ~~~al~ 268 (323)
T d1fcha_ 263 FLEALN 268 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=7.2e-15 Score=134.87 Aligned_cols=272 Identities=13% Similarity=0.039 Sum_probs=190.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008925 138 YNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCK 217 (548)
Q Consensus 138 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (548)
....+..+.+.|++++|+..|+++++.. |.+..+|..++.++...|++++|...+.++.+..+. +...+..++.+|..
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccc
Confidence 3456777888999999999999988875 446778888888999999999999999888776543 67788888888889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 008925 218 EGNMEDAMRFLYRMKELEVHPNLVV-FNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQE 296 (548)
Q Consensus 218 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 296 (548)
.|++++|.+.++++.... |+... +........ ..+.......+..+...+.+.+|..
T Consensus 100 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKE 157 (323)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhc--cchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHH
Confidence 999999999988887743 32211 000000000 0000011111222334456677888
Q ss_pred HHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 008925 297 IFDDMVKAGI-EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIG 375 (548)
Q Consensus 297 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 375 (548)
.+.++++... ..+..++..++..+...|++++|+..++++.... +-+...|..++..+...|++++|++.|+++++..
T Consensus 158 ~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 236 (323)
T d1fcha_ 158 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 236 (323)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh
Confidence 8887776531 2456778888889999999999999999988753 2356688889999999999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----------CCCCHHHHHHHHHHHHHcCCHHHHH
Q 008925 376 INPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKG----------VRPKKSTIQLVADSWRAIGLAREAK 435 (548)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------~~p~~~~~~~l~~~~~~~g~~~~A~ 435 (548)
+.+..++..++.+|.+.|++++|+..|++.++.. .......+..+..++...|+.+.+.
T Consensus 237 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 237 -PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred -hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5567888999999999999999999999887521 0111224455555665566555443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.3e-11 Score=111.59 Aligned_cols=215 Identities=11% Similarity=0.014 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 206 RTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIK-DSDGVDKALTLMEEFGVKPDVVTFSTIMDA 284 (548)
Q Consensus 206 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 284 (548)
.+++.+...+.+.+.+++|+.+++++++.+ |.+..+|+....++...+ ++++|...++.+.+..++ +..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence 344555556666666777777777776654 445566666666666654 367777777776665433 56667777777
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC----
Q 008925 285 WSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVK---- 360 (548)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---- 360 (548)
+...|++++|+..+..+++.. +.+..+|..++.++...|++++|+..++++++.+ +.+...|+.+...+...+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 777777777777777777765 5566777777777777777777777777777653 2245566666555444333
Q ss_pred --hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 008925 361 --MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP-KKSTIQLVADSWR 426 (548)
Q Consensus 361 --~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 426 (548)
+++|+..+.++++.. |.+...|..+...+...| .+++.+.++...+....+ +...+..++.++.
T Consensus 200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 567788888877765 556677777766654443 566777777776533222 2334555555554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.4e-10 Score=104.70 Aligned_cols=212 Identities=9% Similarity=-0.001 Sum_probs=100.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008925 173 YNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEG-NMEDAMRFLYRMKELEVHPNLVVFNSLIKGFL 251 (548)
Q Consensus 173 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (548)
++.+...+.+.+.+++|++.++++++..+. +..+|+....++...| ++++|+..++++++.. +.+..+|..+...+.
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHH
Confidence 333444444444445555555544444322 3444444444444433 3455555555554432 334455555555555
Q ss_pred cCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC------
Q 008925 252 DIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGE------ 325 (548)
Q Consensus 252 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 325 (548)
..|++++|+..+..+.+..+. +...|..+..++...|++++|+..++.+++.+ +.+..+|+.+..++.+.+.
T Consensus 124 ~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred hhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhh
Confidence 555555555555555554322 44555555555555555555555555555554 3444555555544444433
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 008925 326 PQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGIN-PNLKTYETLLWGY 390 (548)
Q Consensus 326 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~ 390 (548)
+++|+..+.++++.. +.+...|+.+...+... ..+++.+.++.+.+.... .+...+..++..|
T Consensus 202 ~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 202 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 345555555555532 22344555554444332 235555555555543211 1233444444444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=3.3e-10 Score=104.59 Aligned_cols=167 Identities=11% Similarity=0.078 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCCC--HH
Q 008925 277 TFSTIMDAWSSAGLMGKCQEIFDDMVKAG----IEPDIHVFSILAKGYVRAGEPQKAESILTSMRKY----GVHPN--VV 346 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~ 346 (548)
.+..+...+...|+++.+...+....... .......+..+...+...+++..+...+.+.... +..+. ..
T Consensus 135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 214 (366)
T d1hz4a_ 135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 214 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence 34445566667777777777776666432 1122344555566666777777777766655431 11111 12
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCH-HHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEIGINP---NLKTYETLLWGYGEAKQPWRAEELLQVMEE----KGVRPKK-STI 418 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~-~~~ 418 (548)
.+..+...+...|++++|...+++..+..... ....+..+..++...|++++|...++++.. .+..|+. ..+
T Consensus 215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 294 (366)
T d1hz4a_ 215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 294 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence 34555566677778888888777766542111 234455677778888888888888877652 2333443 366
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 419 QLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 419 ~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
..++.++.+.|++++|.+.++++.+
T Consensus 295 ~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 295 LLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7778888888888888888888764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=1.1e-09 Score=101.02 Aligned_cols=294 Identities=10% Similarity=0.001 Sum_probs=160.5
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----CHHHHHHHHH
Q 008925 143 RAWCSKNSIEEAWNVVYKMVASGIQPD----AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR-P----NERTCGIIVS 213 (548)
Q Consensus 143 ~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~ 213 (548)
..+...|++++|++++++.++.....+ ...+..+..++...|++++|...+++..+.... + ....+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 344445555555555555544321100 123444455555555555555555544331100 0 1123334445
Q ss_pred HHHhcCCHHHHHHHHHHHHhC----CCCC---CHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCC----CCCHHHHHHHH
Q 008925 214 GYCKEGNMEDAMRFLYRMKEL----EVHP---NLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGV----KPDVVTFSTIM 282 (548)
Q Consensus 214 ~~~~~g~~~~A~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~ 282 (548)
.+...|++..+...+.+.... ..+. ....+..+...+...|+++.+...+........ ......+....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 555566666666655554321 1111 112444455566666777777666665554321 12234455555
Q ss_pred HHHHhCCChhHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 008925 283 DAWSSAGLMGKCQEIFDDMVKA--GIEPD----IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN---VVMFTTVIS 353 (548)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~ 353 (548)
..+...++...+...+...... ..... ...+..+...+...|++++|...++.........+ ...+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 6666777777777777665532 11111 22445566677788888888888887765432221 234556777
Q ss_pred HHhccCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC----CCHHHHHH
Q 008925 354 GWCNAVKMQRAMSIYEKMCEI----GINPN-LKTYETLLWGYGEAKQPWRAEELLQVMEEK----GVR----PKKSTIQL 420 (548)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~----p~~~~~~~ 420 (548)
.+...|++++|...+++++.. +..|+ ..++..+..+|...|++++|.+.+++.++. |.. -....+..
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~ 339 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ 339 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHH
Confidence 888888888888888887642 32332 346777788888888888888888877542 211 11223444
Q ss_pred HHHHHHHcCCHHHHHH
Q 008925 421 VADSWRAIGLAREAKR 436 (548)
Q Consensus 421 l~~~~~~~g~~~~A~~ 436 (548)
++..+...|+.+++.+
T Consensus 340 ~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 340 QLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHTTCSCHHHH
T ss_pred HHHHHHhcCCChHHHH
Confidence 5555666666666554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.32 E-value=1.7e-11 Score=112.39 Aligned_cols=233 Identities=4% Similarity=-0.058 Sum_probs=138.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHH
Q 008925 148 KNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYG--ETYRAEQMLFEMQNNQVRPNERTC-GIIVSGYCKEGNMEDA 224 (548)
Q Consensus 148 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A 224 (548)
.|++++|+.++++..+.. +.+...|..+..++...+ ++++|...+..+....+. +...+ ......+...+.+++|
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHH
Confidence 344666777777766653 445566666666665554 367777777777665333 34443 3344566667777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 008925 225 MRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKA 304 (548)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (548)
+..+++++..+ +.+..+|+.+...+...|++++|...+....+.. |. ...+...+...+..+++...+......
T Consensus 164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 77777777654 4566777777777777777776655444333321 11 111223344455666666666666655
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 008925 305 GIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYE 384 (548)
Q Consensus 305 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 384 (548)
. +++...+..++..+...+++++|...+.+..+.. +.+..++..++..+...|++++|++.|+++++.. |.+...|.
T Consensus 238 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~ 314 (334)
T d1dcea1 238 R-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLD 314 (334)
T ss_dssp C-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHH
T ss_pred C-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHH
Confidence 4 4444455556666666677777777777766542 1134456667777777777777777777777753 22344555
Q ss_pred HHHHHHH
Q 008925 385 TLLWGYG 391 (548)
Q Consensus 385 ~l~~~~~ 391 (548)
.|...+.
T Consensus 315 ~L~~~~~ 321 (334)
T d1dcea1 315 DLRSKFL 321 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5544443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.30 E-value=1.2e-09 Score=98.39 Aligned_cols=193 Identities=12% Similarity=-0.003 Sum_probs=153.1
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 008925 255 DSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILT 334 (548)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 334 (548)
..+++..++++..+..++.+...+...+......|+++.|..+|+++++........+|..++..+.+.|+++.|..+|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34677888888887544556677888888889999999999999999987533335578899999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHH-HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CC
Q 008925 335 SMRKYGVHPNVVMFTTVISG-WCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKG-VR 412 (548)
Q Consensus 335 ~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 412 (548)
.+.+.+. .+...|...+.. +...|+.+.|..+|+.+++.. +.+...|...+..+...|+.++|..+|++.++.. ..
T Consensus 159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 9988642 344445444433 345689999999999999874 6778899999999999999999999999998753 34
Q ss_pred CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 413 PK--KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 413 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
|+ ...|..++..-...|+.+.+.++.+++.+..|...
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 43 34788888888889999999999999987766553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=8.3e-12 Score=114.52 Aligned_cols=217 Identities=7% Similarity=-0.060 Sum_probs=107.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC--ChhhHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhCCChhHHH
Q 008925 219 GNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIK--DSDGVDKALTLMEEFGVKPDVVTF-STIMDAWSSAGLMGKCQ 295 (548)
Q Consensus 219 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~ 295 (548)
|.+++|+.+++.+.... |.+...|..+..++...+ +++++...+..+.+..++ +...+ ......+...+..+.|+
T Consensus 87 ~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 87 ALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHH
Confidence 34455555555555432 334455555554444433 245555555555554322 23322 23334445556666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 008925 296 EIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIG 375 (548)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 375 (548)
..++.+++.+ +.+..+|+.+..++...|++++|...++...+. .|+. ..+...+...+..+++...+.+.....
T Consensus 165 ~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~ 238 (334)
T d1dcea1 165 AFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR 238 (334)
T ss_dssp HHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC
Confidence 6666655554 445555666666666666655554444333321 1111 112222333344455555555555543
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 376 INPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
+++...+..++..+...|++.+|...+.+..+. .|+ ...+..++.++...|++++|+++++++.+.+|
T Consensus 239 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP 307 (334)
T d1dcea1 239 -AEPLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307 (334)
T ss_dssp -CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred -cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 334444445555555556666666665555432 232 23555556666666666666666666555544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=2.8e-10 Score=99.89 Aligned_cols=223 Identities=10% Similarity=-0.073 Sum_probs=144.0
Q ss_pred cccCChhhHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 008925 5 VGKGKPHEAHYIFNCLIEEGHRP---TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVD 81 (548)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 81 (548)
...++.+.|+.-+++++...... ...+|..++.++.+.|++++|++.|++.++.. |.++.+|..+..+|.+.|+++
T Consensus 10 ~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~ 88 (259)
T d1xnfa_ 10 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 88 (259)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHH
Confidence 34566778888888887653221 22477788889999999999999999998864 556788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 008925 82 EAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKM 161 (548)
Q Consensus 82 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 161 (548)
+|+..|+++++.. +.+..++..+..++...|++++|+..|+...+.. +.+......+...+.+.+..+.+..+....
T Consensus 89 ~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (259)
T d1xnfa_ 89 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 165 (259)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 9999999998864 3456788888889999999999999998887752 344555444455555556555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008925 162 VASGIQPDAVTYNTLARAYAQYGET----YRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELE 235 (548)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 235 (548)
.... ++...++ ++..+...... +.+...+....... +....++..++..+...|++++|...|++++...
T Consensus 166 ~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 166 EKSD--KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHSC--CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hccc--hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 5432 2222222 22222211111 11111111111100 0022345566777777888888888888777643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=6.6e-10 Score=97.43 Aligned_cols=129 Identities=15% Similarity=-0.082 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 207 TCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWS 286 (548)
Q Consensus 207 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 286 (548)
++..++.+|.+.|++++|+..|++.+... |.++.+|..++.++...|++++|...++.+.+..+. +..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 44455556666666666666666665543 344556666666666666666666666666655422 3445555666666
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 008925 287 SAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRK 338 (548)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (548)
..|++++|...++..++.. +.+......+...+.+.+..+.+..+......
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 6666666666666666554 33444444444444444444444444444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=2.9e-09 Score=95.81 Aligned_cols=185 Identities=11% Similarity=0.017 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 008925 222 EDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDM 301 (548)
Q Consensus 222 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (548)
++|..+|++.++...+.+...|...+......|+++.|..+++.+.+..+......|...+..+.+.|+++.|..+|+.+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34444444444332233333444444444444444444444444444332222233444444444455555555555555
Q ss_pred HHcCCCCCHHHHHHHHHH-HHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCC
Q 008925 302 VKAGIEPDIHVFSILAKG-YVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIG-INPN 379 (548)
Q Consensus 302 ~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 379 (548)
++.. +.+...|...+.. +...|+.+.|..+|+.+.+.. +.+...|...+..+...|+.+.|..+|++++... .+|+
T Consensus 161 l~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 4443 2233333332222 122345555555555555431 2233445555555555555555555555555432 1111
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 380 --LKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 380 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
...|...+..-...|+.+.+..+++++.+
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23444444444455555555555555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=5.6e-08 Score=79.99 Aligned_cols=126 Identities=10% Similarity=-0.065 Sum_probs=88.0
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 008925 317 AKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQP 396 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (548)
+..+...|++++|++.|+++. +|+..+|..++.+|...|++++|++.|+++++.+ +.+...|..++.+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 445666777777777776542 4566677777777777777777777777777765 55667777777777777777
Q ss_pred HHHHHHHHHHHHCCC--------------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 397 WRAEELLQVMEEKGV--------------RPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 397 ~~A~~~~~~~~~~~~--------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
++|+..|++.+.... .++ ..++..++.++...|++++|.+.++.+.+..+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 777777777664210 011 245667788888888888888888888765544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.83 E-value=1.6e-05 Score=68.92 Aligned_cols=111 Identities=17% Similarity=0.076 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChH
Q 008925 291 MGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR----AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN----AVKMQ 362 (548)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 362 (548)
...+...+..... ..+...+..|...|.. ..+...+...++...+.| +..+...+...|.. ..+++
T Consensus 126 ~~~a~~~~~~~~~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 126 FKKAVEYFTKACD---LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred hHHHHHHhhhhhc---ccccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchh
Confidence 3344444444433 2344445555555543 234455555555555532 44444444444443 45667
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 008925 363 RAMSIYEKMCEIGINPNLKTYETLLWGYGE----AKQPWRAEELLQVMEEKG 410 (548)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 410 (548)
+|+..|+++.+.| ++..+..|+..|.+ ..+.++|.++|++..+.|
T Consensus 200 ~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 200 EALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 7777777776654 44555556665554 335666777776666554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=1.8e-07 Score=76.81 Aligned_cols=124 Identities=11% Similarity=-0.007 Sum_probs=83.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 008925 282 MDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKM 361 (548)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 361 (548)
...+...|+++.|++.|.++. +|++.++..++.+|...|++++|+..|++.++.+ +.+...|..++.++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 344556677777777666432 5566666677777777777777777777776653 22455666777777777777
Q ss_pred HHHHHHHHHHHHcCC--------------CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008925 362 QRAMSIYEKMCEIGI--------------NPN-LKTYETLLWGYGEAKQPWRAEELLQVMEEKG 410 (548)
Q Consensus 362 ~~A~~~~~~~~~~~~--------------~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 410 (548)
++|++.|++++.... .++ ..++..+..++...|++++|.+.++.+.+..
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 777777777665310 011 3556678888999999999999999888753
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=4.8e-08 Score=72.99 Aligned_cols=92 Identities=13% Similarity=0.034 Sum_probs=53.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC
Q 008925 35 LVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGK 114 (548)
Q Consensus 35 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 114 (548)
-+..+.+.|++++|+..|+++++.. |.+...|..+..+|...|++++|+..+++.++.+ +.++..|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 3455555666666666666665543 4445556666666666666666666666665543 3455556666666666666
Q ss_pred hHHHHHHHHHhhhC
Q 008925 115 PEESLKLLQLMSQD 128 (548)
Q Consensus 115 ~~~A~~~~~~~~~~ 128 (548)
+++|+..|++..+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666665543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.79 E-value=1.3e-05 Score=69.52 Aligned_cols=223 Identities=13% Similarity=0.067 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008925 135 DRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQ----YGETYRAEQMLFEMQNNQVRPNERTCGI 210 (548)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 210 (548)
+..+..|...+...+++++|+++|++..+.| +...+..|...|.. ..++..|...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 3344555555556666666666666665554 44445555555554 445666666666655543 2233333
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 008925 211 IVSGYCK----EGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLD----IKDSDGVDKALTLMEEFGVKPDVVTFSTIM 282 (548)
Q Consensus 211 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 282 (548)
+...+.. ..+.+.|...++...+.+. ......+...+.. ......+...+...... .+...+..+.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhh
Confidence 3333332 3456667777776666441 2222222222221 22334444444444443 3455666666
Q ss_pred HHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 283 DAWSS----AGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR----AGEPQKAESILTSMRKYGVHPNVVMFTTVISG 354 (548)
Q Consensus 283 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 354 (548)
..+.. ..+...+...++...+.+ +..+...|...|.. ..++++|+..|++..+.| ++..+..|+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~ 223 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 223 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence 66654 445667777777777643 56666677776765 568889999999988865 45666777777
Q ss_pred Hhc----cCChHHHHHHHHHHHHcC
Q 008925 355 WCN----AVKMQRAMSIYEKMCEIG 375 (548)
Q Consensus 355 ~~~----~g~~~~A~~~~~~~~~~~ 375 (548)
|.. ..+.++|.+.|+++.+.|
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCc
Confidence 764 447888999999998877
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.5e-07 Score=70.25 Aligned_cols=90 Identities=12% Similarity=0.015 Sum_probs=49.0
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 008925 317 AKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQP 396 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (548)
+..+.+.|++++|+..|+++++.. +.+...|..++.++...|++++|+..++++++.+ |.+...|..++.++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 444555555555555555555432 2234455555555555555555555555555554 44555555555555555555
Q ss_pred HHHHHHHHHHHH
Q 008925 397 WRAEELLQVMEE 408 (548)
Q Consensus 397 ~~A~~~~~~~~~ 408 (548)
++|+..|++.++
T Consensus 88 ~~A~~~~~~a~~ 99 (117)
T d1elwa_ 88 EEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.77 E-value=4.9e-08 Score=81.40 Aligned_cols=99 Identities=12% Similarity=-0.025 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008925 308 PDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLL 387 (548)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 387 (548)
|+...+...+..|.+.|++++|+..|+++++.. +.+...|..++.+|.+.|++++|+..|+++++.. |-+..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 555566666666777777777777776666543 2345566666667777777777777777766653 44556666677
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 008925 388 WGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~ 408 (548)
.+|...|++++|+..|+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777766654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=3.3e-07 Score=81.11 Aligned_cols=196 Identities=10% Similarity=0.006 Sum_probs=111.6
Q ss_pred HHHHHcCCChhhHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CC--CHHHHHHH
Q 008925 247 IKGFLDIKDSDGVDKALTLMEEF----GVKP-DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI---EP--DIHVFSIL 316 (548)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l 316 (548)
...|...+++++|.+.|.++.+. +.++ ...+|..+..+|.+.|++++|...++...+... .+ ...++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 34556666666666666655442 1111 134566677777777777777777776654210 11 12345555
Q ss_pred HHHHHH-cCCHhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-----H-HHHH
Q 008925 317 AKGYVR-AGEPQKAESILTSMRKY----GVHPN-VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPN-----L-KTYE 384 (548)
Q Consensus 317 ~~~~~~-~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~-~~~~ 384 (548)
+..|.. .|++++|+..++++.+. +.++. ..++..++..+...|++++|+..|+++........ . ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 666644 57888888887776531 11111 23566777778888888888888888776421111 1 2234
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 008925 385 TLLWGYGEAKQPWRAEELLQVMEEKGVR-PK---KSTIQLVADSWRA--IGLAREAKRVLKSAE 442 (548)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~---~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 442 (548)
..+..+...|++..|...+++..+.... ++ ...+..++.++.. .+.+++|++.++++.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 4555666778888888888877653211 11 2234445555443 245777777776543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=6.7e-07 Score=79.09 Aligned_cols=195 Identities=12% Similarity=-0.011 Sum_probs=101.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhhhCC----CCCCCHHHHHHH
Q 008925 71 INACSESGNVDEAMKIFQKMKDS----GCKP-TTSTYNTLIKGYGNVGKPEESLKLLQLMSQDK----NVKPNDRTYNIL 141 (548)
Q Consensus 71 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l 141 (548)
...|...|++++|.+.|.++.+. +-++ ...+|..+..+|.+.|++++|+..+++..... .......++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 34455666666666666665442 1111 12456666666666666666666666543311 011113345555
Q ss_pred HHHHHh-CCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHH
Q 008925 142 VRAWCS-KNSIEEAWNVVYKMVAS----GIQP-DAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNE------RTCG 209 (548)
Q Consensus 142 ~~~~~~-~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~ 209 (548)
+..|.. .|++++|+..+++..+. +.++ -..++..++..+...|++++|.+.|+++......... ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 555533 47777777777665432 1111 1344666777777777777777777776654322111 1233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHc--CCChhhHHHHHHH
Q 008925 210 IIVSGYCKEGNMEDAMRFLYRMKELEVH-PN---LVVFNSLIKGFLD--IKDSDGVDKALTL 265 (548)
Q Consensus 210 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~~~~~~a~~~~~~ 265 (548)
..+.++...|+++.|...+++..+.... ++ ......++.++.. .+.+++|+..|+.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4445566677777777777777654311 11 1233445555443 2335555555543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=3.9e-07 Score=72.31 Aligned_cols=92 Identities=11% Similarity=0.045 Sum_probs=54.5
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008925 316 LAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQ 395 (548)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (548)
.+..|.+.|++++|+..|+++++.+ +.+...|..++.+|...|++++|+..|+++++.. +.+..+|..++.++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 3445556666666666666666543 2244455666666666666666666666666654 4455566666666666666
Q ss_pred hHHHHHHHHHHHHC
Q 008925 396 PWRAEELLQVMEEK 409 (548)
Q Consensus 396 ~~~A~~~~~~~~~~ 409 (548)
+++|...+++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 66666666666553
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=3.6e-07 Score=72.54 Aligned_cols=95 Identities=12% Similarity=0.078 Sum_probs=61.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 008925 32 YTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGN 111 (548)
Q Consensus 32 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (548)
+...+..+.+.|++++|+..|+++++.. |.+...|..+..+|...|++++|+..|+++++.. +.+..+|..++.++..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 3344556666777777777777766653 4456666666667777777777777777766653 3345666666666667
Q ss_pred cCChHHHHHHHHHhhhC
Q 008925 112 VGKPEESLKLLQLMSQD 128 (548)
Q Consensus 112 ~g~~~~A~~~~~~~~~~ 128 (548)
.|++++|+..+++....
T Consensus 91 ~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKV 107 (159)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 77777777666666553
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=8.3e-08 Score=71.84 Aligned_cols=97 Identities=10% Similarity=0.103 Sum_probs=55.9
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 008925 350 TVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQ---PWRAEELLQVMEEKGVRPKK-STIQLVADSW 425 (548)
Q Consensus 350 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~ 425 (548)
.++..+...+++++|.+.|++++..+ |.+..++..++.++.+.++ +++|+.+++++...+..|+. .++..++.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34555555666666666666666655 5566666666666655433 33466666666543322221 2455666666
Q ss_pred HHcCCHHHHHHHHHHHHhccCC
Q 008925 426 RAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 426 ~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
.+.|++++|++.++++.+.+|.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhhHHHHHHHHHHHHhCcC
Confidence 6666666666666666655543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.61 E-value=3e-07 Score=76.45 Aligned_cols=99 Identities=7% Similarity=0.025 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-CHHHHHHH
Q 008925 273 PDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHP-NVVMFTTV 351 (548)
Q Consensus 273 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 351 (548)
|+...+...+..+...|++++|+..|.++++.. |.+...|..++.+|.+.|++++|+..|+++++. .| +..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence 566677777888888888888888888888776 667778888888888888888888888888875 34 46678888
Q ss_pred HHHHhccCChHHHHHHHHHHHHc
Q 008925 352 ISGWCNAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 352 ~~~~~~~g~~~~A~~~~~~~~~~ 374 (548)
+.+|...|++++|+..|+++++.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 88888888888888888888764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.57 E-value=4e-07 Score=67.13 Aligned_cols=89 Identities=16% Similarity=0.048 Sum_probs=63.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 008925 350 TVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAI 428 (548)
Q Consensus 350 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 428 (548)
.++..+.+.|++++|+..|+++++.. |.+..+|..++.++.+.|++++|+..++++++. .|+ ...+..++.++...
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHC
Confidence 34556667777777777777777764 456677777777777777777777777777764 343 55777777777777
Q ss_pred CCHHHHHHHHHHH
Q 008925 429 GLAREAKRVLKSA 441 (548)
Q Consensus 429 g~~~~A~~~~~~~ 441 (548)
|++++|++.+++.
T Consensus 98 g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 98 HNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7777777777764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=6e-07 Score=67.00 Aligned_cols=93 Identities=14% Similarity=0.077 Sum_probs=40.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---HhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHh
Q 008925 281 IMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGE---PQKAESILTSMRKYGVHPN-VVMFTTVISGWC 356 (548)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 356 (548)
++..+...+++++|.+.|+..+..+ +.++.++..++.++.+.++ +++|+.+++++...+..|+ ..++..++.+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 3334444444445555555444443 3444444444444443322 2234444444443321111 113444444444
Q ss_pred ccCChHHHHHHHHHHHHc
Q 008925 357 NAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~ 374 (548)
+.|++++|++.|+++++.
T Consensus 84 ~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHh
Confidence 444444444444444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.51 E-value=6.1e-07 Score=66.11 Aligned_cols=89 Identities=7% Similarity=-0.044 Sum_probs=52.7
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008925 316 LAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQ 395 (548)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (548)
++..+.+.|++++|+..|+++++.. +-+...|..++.++.+.|++++|+..|+++++.. |.+...+..++..|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 3445556666666666666665542 1134556666666666666666666666666654 4455666666666666666
Q ss_pred hHHHHHHHHHH
Q 008925 396 PWRAEELLQVM 406 (548)
Q Consensus 396 ~~~A~~~~~~~ 406 (548)
+++|++.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=4e-06 Score=66.97 Aligned_cols=84 Identities=13% Similarity=-0.050 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP-KKSTIQLVADS 424 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 424 (548)
.+|+.+..+|.+.|++++|+..++++++.. |.+..++..++.+|...|++++|+..|+++++. .| +..+...+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 356778888888999999999999999876 668888888999999999999999999998874 45 44455566555
Q ss_pred HHHcCCHH
Q 008925 425 WRAIGLAR 432 (548)
Q Consensus 425 ~~~~g~~~ 432 (548)
..+.+...
T Consensus 140 ~~~~~~~~ 147 (170)
T d1p5qa1 140 QQRIRRQL 147 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=2.2e-06 Score=64.83 Aligned_cols=93 Identities=14% Similarity=0.093 Sum_probs=50.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-----HHHHHHHH
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGV-RPK-----KSTIQLVA 422 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-----~~~~~~l~ 422 (548)
..++..+...|++++|+..|+++++.+ |.+...+..+..+|.+.|++++|+..++++++... .+. ..++..++
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 344555555566666666666666554 44555555666666666666666666665553110 001 12444555
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 008925 423 DSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~~~ 442 (548)
..+...+++++|+..++++.
T Consensus 87 ~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 55566666666666666554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=2e-07 Score=89.35 Aligned_cols=227 Identities=9% Similarity=-0.065 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHH
Q 008925 12 EAHYIFNCLIEEGHRPT-LITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSI-LFNAMINACSESGNVDEAMKIFQK 89 (548)
Q Consensus 12 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 89 (548)
+|.+.|+++++.. |+ ..++..++.++...|++++| |++++.. .|+-. ..+... ..-...+..+.+.++.
T Consensus 4 eA~q~~~qA~~l~--p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~--~Lw~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLK--ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQ--DLWNHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHH--GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHH--HHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHH--HHHHHHHHHHHHHHHH
Confidence 6889999998742 33 34667777888888888765 6776654 23211 111111 1111224566777777
Q ss_pred HHhcCCCCCHHHHHHH--HHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 008925 90 MKDSGCKPTTSTYNTL--IKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQ 167 (548)
Q Consensus 90 ~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 167 (548)
..+....++..-.... .......+.++.|+..+....+. .+++...+..+...+.+.|+.++|...+.+.....
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV--DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHH--
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence 6654323332222111 11222344556666555544332 24456677888888899999999998888776532
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008925 168 PDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLI 247 (548)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 247 (548)
...++..++..+...|++++|...|++..+..+. +...|+.++..+...|+..+|+..|.+.+... +|-..++..|.
T Consensus 151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~ 227 (497)
T d1ya0a1 151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQ 227 (497)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHH
Confidence 2467788999999999999999999999887544 67899999999999999999999999998865 67788888888
Q ss_pred HHHHcCC
Q 008925 248 KGFLDIK 254 (548)
Q Consensus 248 ~~~~~~~ 254 (548)
..+.+..
T Consensus 228 ~~~~~~~ 234 (497)
T d1ya0a1 228 KALSKAL 234 (497)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 8776543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=3.6e-07 Score=87.51 Aligned_cols=229 Identities=9% Similarity=-0.048 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008925 153 EAWNVVYKMVASGIQPD-AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRM 231 (548)
Q Consensus 153 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 231 (548)
+|.+.|+++.+. .|+ ...+..+..++...|++++| |++++...+. .....+.....+ ...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~~e~~Lw--~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKKVEQDLW--NHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHTHHHHHH--HHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHhHHHHHH--HHHHHHHHHHHHHh
Confidence 788999998875 344 55677788888888888776 6666543211 011111111111 11245677777777
Q ss_pred HhCCCCCCHHHHHHHHHHH--HcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 008925 232 KELEVHPNLVVFNSLIKGF--LDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPD 309 (548)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 309 (548)
.+....++..-.......+ ...+.++.++..+....... .++...+..+...+.+.|+.+.|...+....... .
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~ 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---H
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence 6654334433222222222 22334455554444433332 2345667778888889999999998888776542 1
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 310 IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWG 389 (548)
Q Consensus 310 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (548)
..++..++..+...|++++|...|+++.+.. +.+...|+.++..+...|+..+|+..|.+++... +|...++..|...
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 3577888999999999999999999999863 2345689999999999999999999999999876 7888899999888
Q ss_pred HHhcCC
Q 008925 390 YGEAKQ 395 (548)
Q Consensus 390 ~~~~g~ 395 (548)
+.+...
T Consensus 230 ~~~~~~ 235 (497)
T d1ya0a1 230 LSKALE 235 (497)
T ss_dssp HHHHTT
T ss_pred HHHhhh
Confidence 765443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=1.6e-05 Score=63.32 Aligned_cols=81 Identities=10% Similarity=-0.082 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 311 HVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390 (548)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (548)
.+|+.+..+|.+.|++++|+..++.+++.+ +.++.++..++.+|...|++++|+..|+++++.. |.|......+..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 356778888889999999999999988864 2367788888999999999999999999998875 44666665555554
Q ss_pred Hhc
Q 008925 391 GEA 393 (548)
Q Consensus 391 ~~~ 393 (548)
.+.
T Consensus 141 ~~~ 143 (170)
T d1p5qa1 141 QRI 143 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=7.6e-06 Score=61.71 Aligned_cols=93 Identities=11% Similarity=0.160 Sum_probs=44.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CC-----HHHHHHHHH
Q 008925 280 TIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVH-PN-----VVMFTTVIS 353 (548)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-----~~~~~~l~~ 353 (548)
.+...+...|++++|+..|.++++.+ |.+..++..+..+|.+.|++++|+..++++++.... +. ..+|..++.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555543 344555555555555555555555555554432100 00 123344444
Q ss_pred HHhccCChHHHHHHHHHHHH
Q 008925 354 GWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~ 373 (548)
.+...+++++|+..|++.+.
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 44445555555555555444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.26 E-value=2.1e-05 Score=61.33 Aligned_cols=63 Identities=14% Similarity=-0.024 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
.++..++.+|.+.|++++|++.++++++.. |.+..+|..++.++...|++++|+..|++.++.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355566666777777777777777777665 556677777777777777777777777777663
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.23 E-value=3.6e-05 Score=61.08 Aligned_cols=93 Identities=11% Similarity=0.006 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADS 424 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 424 (548)
.+|..+..+|.+.|++++|+..++++++.. |.+..+|..++.++...|++++|+..|+++++. .|+ ..+...+..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 356677888888999999999999999876 778888999999999999999999999999874 454 4455555555
Q ss_pred HHHcCCHH-HHHHHHHHH
Q 008925 425 WRAIGLAR-EAKRVLKSA 441 (548)
Q Consensus 425 ~~~~g~~~-~A~~~~~~~ 441 (548)
....+... ...+.+.+|
T Consensus 142 ~~~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 142 QKKAKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 54544333 234444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.22 E-value=1.1e-05 Score=64.31 Aligned_cols=78 Identities=17% Similarity=0.030 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 008925 345 VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVAD 423 (548)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 423 (548)
...+..+..++.+.|++++|+..++++++.. |.+...|..++.++...|++++|+..|+++++. .|+ ..+...+..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l~~ 153 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3456667777777888888888888887765 566777777888888888888888888877764 343 334444444
Q ss_pred HH
Q 008925 424 SW 425 (548)
Q Consensus 424 ~~ 425 (548)
+.
T Consensus 154 ~~ 155 (169)
T d1ihga1 154 VK 155 (169)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.15 E-value=3.6e-05 Score=59.99 Aligned_cols=76 Identities=16% Similarity=0.015 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 311 HVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLW 388 (548)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 388 (548)
.+++.++.+|.+.|++++|+..++.+++.+ +.+..+|..++.++...|++++|+..|+++++.. |-|..+...+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l~~ 143 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYEL 143 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 466778888999999999999999988864 3467788899999999999999999999999875 445555544433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.14 E-value=2.3e-05 Score=62.44 Aligned_cols=82 Identities=13% Similarity=0.078 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLW 388 (548)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 388 (548)
....+..+..++.+.|++++|+..++++++.. +.+...|..++.++...|++++|+..|+++++.. |.+......+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567788899999999999999999999864 3467789999999999999999999999999975 556666666655
Q ss_pred HHHh
Q 008925 389 GYGE 392 (548)
Q Consensus 389 ~~~~ 392 (548)
+..+
T Consensus 154 ~~~~ 157 (169)
T d1ihga1 154 VKQK 157 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.13 E-value=6e-05 Score=60.20 Aligned_cols=126 Identities=12% Similarity=0.053 Sum_probs=86.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 008925 280 TIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAV 359 (548)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 359 (548)
.........|++++|...|.+++... +-+.. ......+-+...-..+.. .....+..++..+...|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~-rG~~l---------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW-RGPVL---------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-CSSTT---------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC-ccccc---------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 34456677888888888888887642 11100 000010111111111111 12356778889999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCCHHHHHH
Q 008925 360 KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME-----EKGVRPKKSTIQL 420 (548)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~ 420 (548)
++++|+..++++++.. |-+...|..++.+|...|+..+|++.|+++. +.|+.|+..+-..
T Consensus 82 ~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 82 RASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred CchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 9999999999999986 7788999999999999999999999999874 4689998776443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.07 E-value=4e-05 Score=60.81 Aligned_cols=82 Identities=18% Similarity=0.069 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 311 HVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390 (548)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (548)
.+|+.+..+|.+.|++++|+..++.+++.+ +.+..+|..++.++...|++++|+..|+++++.. |.+......+..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 356667888888999999999998888864 3467788888888999999999999999998865 55666666665554
Q ss_pred HhcC
Q 008925 391 GEAK 394 (548)
Q Consensus 391 ~~~g 394 (548)
...+
T Consensus 143 ~~~~ 146 (168)
T d1kt1a1 143 KKAK 146 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.01 E-value=0.0039 Score=54.57 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=24.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008925 392 EAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLK 439 (548)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 439 (548)
+.++..-...+++...+.+ +..+...+.++|...++++.-++.++
T Consensus 260 k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 260 KVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp HTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 3444444555555544432 34566667777777777655444443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.93 E-value=7.8e-06 Score=70.10 Aligned_cols=122 Identities=8% Similarity=-0.063 Sum_probs=65.9
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEA 83 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 83 (548)
.+++|++++|+..|++.++..+. +...+..++..++..|++++|.+.|+...+.. +.+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 34667777777777777776544 66777777777777777777777777777652 22334444444443333322222
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 008925 84 MKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQ 127 (548)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 127 (548)
..-.......+-+++...+......+...|+.++|..+++++.+
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 21111111111111222333344455566666666666666554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.92 E-value=8.7e-06 Score=69.80 Aligned_cols=127 Identities=13% Similarity=0.011 Sum_probs=78.8
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 320 YVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRA 399 (548)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 399 (548)
..+.|++++|+..+++.++.. +.|...+..++..++..|++++|.+.|+.+.+.. |.+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 345678888888888887763 3356677888888888888888888888887764 33445555555444433333322
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 400 EELLQVMEEKGVRPKK-STIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 400 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
..........+ .|+. ..+...+..+...|+.++|...++++.+..|..+
T Consensus 84 ~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 84 AQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 133 (264)
T ss_dssp TTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 22111100111 2322 2344456777888999999999999887776655
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.91 E-value=3.6e-05 Score=59.25 Aligned_cols=36 Identities=8% Similarity=0.017 Sum_probs=21.8
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 008925 287 SAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRA 323 (548)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (548)
+.+.+++|+..|+.+++.. |.+..++..++.+|...
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~ 44 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLEL 44 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHh
Confidence 4445666666666666665 55566666666665543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.87 E-value=0.00012 Score=58.49 Aligned_cols=107 Identities=11% Similarity=0.177 Sum_probs=54.9
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEA 83 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 83 (548)
+...|++++|.+.|..++..-..+ .. ........+...-..+.. .....+..+...+.+.|++++|
T Consensus 21 ~~~~g~~e~A~~~~~~AL~l~rG~-~l---------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~~A 86 (179)
T d2ff4a2 21 AAAAGRFEQASRHLSAALREWRGP-VL---------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRASAV 86 (179)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSS-TT---------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCccc-cc---------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCchHH
Confidence 567899999999999998752111 00 000000000111111110 0123445555556666666666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 008925 84 MKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLM 125 (548)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 125 (548)
+..++++++.. +-+...|..++.+|...|+.++|++.|+++
T Consensus 87 l~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 87 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66666665542 335555666666666666666666666554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.86 E-value=1.9e-05 Score=60.89 Aligned_cols=97 Identities=11% Similarity=-0.044 Sum_probs=71.2
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 320 YVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA----------VKMQRAMSIYEKMCEIGINPNLKTYETLLWG 389 (548)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (548)
|-+.+.+++|+..|+.+.+.. +.+..++..++.++... +.+++|+..|+++++.+ |.+..+|..++.+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 445667899999999998864 34566778888777643 44678999999999876 6778888888888
Q ss_pred HHhcCC-----------hHHHHHHHHHHHHCCCCCCHHHHHH
Q 008925 390 YGEAKQ-----------PWRAEELLQVMEEKGVRPKKSTIQL 420 (548)
Q Consensus 390 ~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~ 420 (548)
|...|+ +++|.+.|+++++ +.|+...+..
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~ 124 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLK 124 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHH
Confidence 876543 5778888888876 3576664443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.84 E-value=0.0078 Score=52.63 Aligned_cols=133 Identities=11% Similarity=0.102 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIK 107 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 107 (548)
|..-...++..|.+.|.++.|..+|..+. | |..++..+.+.++++.|.+++.+. -+..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~------d---~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS------N---FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTT------C---HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC------C---HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence 33334445555555566666655555321 1 444555555555555555554433 13445555555
Q ss_pred HHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008925 108 GYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQ 182 (548)
Q Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (548)
.+.......-|.- ... ....+......++..|-..|.+++...+++...... ..+...++.++..|++
T Consensus 78 ~l~~~~e~~la~i-----~~~-~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 78 ACVDGKEFRLAQM-----CGL-HIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 145 (336)
T ss_dssp HHHHTTCHHHHHH-----TTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHH-----HHH-HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHH
Confidence 5554443332211 010 012233333445555555555555555555544321 2344444455554444
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.74 E-value=0.00025 Score=55.23 Aligned_cols=99 Identities=14% Similarity=-0.027 Sum_probs=64.8
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCC-CC----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCC-
Q 008925 352 ISGWCNAVKMQRAMSIYEKMCEIGI-NP----------NLKTYETLLWGYGEAKQPWRAEELLQVMEEK-----GVRPK- 414 (548)
Q Consensus 352 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~- 414 (548)
+..+...|++++|+..|+++++..- .| ...+|..+..+|...|++++|...+++.+.. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3344455677777777777665310 01 1345777788888888888888888777631 11222
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q 008925 415 ----KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPN 450 (548)
Q Consensus 415 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 450 (548)
...+..++.++...|++++|+..++++.+..+...+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 124567788899999999999999998866654443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.59 E-value=0.00057 Score=53.08 Aligned_cols=97 Identities=12% Similarity=0.101 Sum_probs=68.5
Q ss_pred HHHHH--HHHHHHcCCHhHHHHHHHHHHhCCC-CC----------CHHHHHHHHHHHhccCChHHHHHHHHHHHHc----
Q 008925 312 VFSIL--AKGYVRAGEPQKAESILTSMRKYGV-HP----------NVVMFTTVISGWCNAVKMQRAMSIYEKMCEI---- 374 (548)
Q Consensus 312 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~-~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 374 (548)
+|..+ +..+...|++++|+..|++.++... .| ....|+.+..+|...|++++|+..++++++.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 4456677888888888888765210 01 1346778888888999999999888888753
Q ss_pred -CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 375 -GINPN-----LKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 375 -~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
...++ ...+..++.+|...|++++|+..|+++++
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 22467788999999999999999998864
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.00043 Score=48.33 Aligned_cols=60 Identities=8% Similarity=-0.104 Sum_probs=27.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEIG-----INPN-LKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
..++..+.+.|++++|+..|+++++.. ..++ ..++..|+.++.+.|++++|+..++++++
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 344444555555555555555554320 0111 23444445555555555555555555444
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.0015 Score=45.41 Aligned_cols=76 Identities=11% Similarity=0.034 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-----CCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHH
Q 008925 310 IHVFSILAKGYVRAGEPQKAESILTSMRKYG-----VHPN-VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTY 383 (548)
Q Consensus 310 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 383 (548)
...+..++..+.+.|++++|+..|+++++.. ..++ ..++..++.++.+.|++++|+..++++++.. |.+..++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~ 83 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRAN 83 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHH
Confidence 3445566677777777777777777665421 1122 3466777777777777777777777777764 4445555
Q ss_pred HHH
Q 008925 384 ETL 386 (548)
Q Consensus 384 ~~l 386 (548)
..+
T Consensus 84 ~Nl 86 (95)
T d1tjca_ 84 GNL 86 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.14 E-value=0.011 Score=43.96 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=39.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCC
Q 008925 359 VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE----AKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRA----IGL 430 (548)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 430 (548)
.+.++|+++++++.+.| ++.....|...|.. ..+.++|.++|++..+.| ++.....++..|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 45556666666655544 34444444444433 334556666666665543 23334444444443 235
Q ss_pred HHHHHHHHHHHH
Q 008925 431 AREAKRVLKSAE 442 (548)
Q Consensus 431 ~~~A~~~~~~~~ 442 (548)
.++|.++++++.
T Consensus 111 ~~~A~~~~~~Aa 122 (133)
T d1klxa_ 111 EKQAVKTFEKAC 122 (133)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.04 E-value=0.013 Score=43.57 Aligned_cols=110 Identities=14% Similarity=0.029 Sum_probs=61.0
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHH
Q 008925 290 LMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN----AVKMQRAM 365 (548)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 365 (548)
++++|..+|++..+.+ .+. ....|.. ....+.++|+..+++..+.| ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g-~~~--a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN-EMF--GCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT-CTT--HHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC-Chh--hhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 4455666666665554 221 1222221 22345666777776666654 34444445554442 34567777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 008925 366 SIYEKMCEIGINPNLKTYETLLWGYGE----AKQPWRAEELLQVMEEKG 410 (548)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 410 (548)
++|++..+.| ++.....|...|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 7777777755 44455555555554 346677777777776655
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.03 E-value=0.12 Score=47.39 Aligned_cols=204 Identities=8% Similarity=-0.061 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHH
Q 008925 219 GNMEDAMRFLYRMKELEVHPNLVVFNS----LIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKC 294 (548)
Q Consensus 219 g~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 294 (548)
.+.+.|...+....... ..+...+.. +.......+..+.+...+......+ .+.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 45666666666554422 112211111 1122223344455555555444432 2333333333334455666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh-HHHHHHHHHHHH
Q 008925 295 QEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKM-QRAMSIYEKMCE 373 (548)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 373 (548)
...+..+.... .......--++.++...|+.+.|...|..+.. .++ -|.-|...- .|.. .-.. . .
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa~~--Lg~~~~~~~---~---~ 370 (450)
T d1qsaa1 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAAQR--IGEEYELKI---D---K 370 (450)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHHHH--TTCCCCCCC---C---C
T ss_pred HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHHHH--cCCCCCCCc---C---C
Confidence 66666554321 22233445556666666777777766666653 122 222222111 1110 0000 0 0
Q ss_pred cCCCCC-HHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 374 IGINPN-LKT---YETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 374 ~~~~~~-~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
....+. ... -..-+..+...|+...|...|..+... .+......++....+.|.++.|+....++.
T Consensus 371 ~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 000000 000 112345677889999999999888753 356666778888999999999998887753
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.56 E-value=0.065 Score=38.24 Aligned_cols=69 Identities=12% Similarity=0.203 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 378 PNLKTYETLLWGYGEAKQ---PWRAEELLQVMEEKGVRPKK-STIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
|...+--..++++.++.. .++|+.++++....+ +.+. ..+..++-++.+.|++++|.++++++++.+|.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 444454555555554433 345555555555421 1122 34445555566666666666666665555443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.53 E-value=0.23 Score=34.97 Aligned_cols=134 Identities=13% Similarity=0.086 Sum_probs=57.7
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 008925 287 SAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMS 366 (548)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 366 (548)
-.|..++..++..+.... .+..-||.++.-....-+-+...++++.+=+. .|. ..+++......
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv~ 77 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 77 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHHH
Confidence 456666666666666653 23444555554444444444444444443221 111 12222222222
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 367 IYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
.+-.+ ..+...+..-++.+..+|+-++-.++++.+.+. -+|+++.+..++.+|.+.|...+|-.++.++-
T Consensus 78 C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~AC 147 (161)
T d1wy6a1 78 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEAC 147 (161)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 22211 112233333344444455544444444444332 24444444455555555555555555554443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.53 E-value=0.23 Score=34.97 Aligned_cols=61 Identities=23% Similarity=0.338 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 008925 279 STIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYG 340 (548)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 340 (548)
...++.+...|+-++-.+++..+.+.+ .+++.....+..+|.+.|+..++-+++.++-+.|
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 333444444444444444444444433 4444444444445555555544444444444443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.41 E-value=0.93 Score=41.15 Aligned_cols=116 Identities=7% Similarity=0.023 Sum_probs=64.1
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHH----HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 008925 254 KDSDGVDKALTLMEEFGVKPDVVTFSTIMDA----WSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKA 329 (548)
Q Consensus 254 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 329 (548)
.+.+.+...+......... +......+-.. ....+..+.+...+...... ..+.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc--ccchHHHHHHHHHHHHcCChHHH
Confidence 4566666666665544322 22222222222 22345556666666666554 33444444455555666777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 330 ESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 330 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
...++.+... ........--++.++...|+.++|..+|..+..
T Consensus 305 ~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 305 NTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 7777766432 111233334566777777888888888887764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.81 E-value=0.14 Score=36.50 Aligned_cols=71 Identities=8% Similarity=0.016 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHhcc---CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 008925 343 PNVVMFTTVISGWCNA---VKMQRAMSIYEKMCEIGINPNL-KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS 416 (548)
Q Consensus 343 p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 416 (548)
|...+-.....++.+. .+.++++.+|+++.+.+ +.+. ..+..|..+|.+.|++++|.++++.+++. .|+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~ 107 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 107 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcH
Confidence 4555555555555543 44667888888877653 3343 46667777788888888888888888773 56543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.10 E-value=3.3 Score=27.44 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=18.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008925 366 SIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (548)
+-++.+....+-|++....+-+++|.+.+++.-|+++|+-..
T Consensus 27 rgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 27 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444433
|