Citrus Sinensis ID: 008927

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
Protein Sequence
MAISLLSAITTLTRFSASSSSASINFKYIFSRRTVFTASPKRQKQRGCKIMASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSVPSTSIFV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHcccccccccccEEEEEEEEEEEEEcccccccccccccccccccccccccccccccEEcccccccccccHHHHHccccccccEEEcccccEEEEEEcccccccEEEEEccccccccccccccccccccccccccccEEEEEEccEEEEEEcccccEEEEEcccccccccccccccccccEEEEcccccccccEEEEEEEcccccccccEEEEEEEEcccccccccEEEEEcccccccccccccccEEEEEEcccccccccccEEEEEEEEccccEEEEEEEccccccccccccccccccccEEEEEEEcccccEEEEEEEEcccEEEEEEccccccccccEEEEcccEEEEEEcccccEEEEEEEEccEEEEEEEEcccccEEEEccccEEEEEEEEEccEEEEEEEccccccEEEEEEcccccEEEEEEEEEcccccccccccccccccEEEEEEcccccEEEEEEEEccccccccccccccccEEEEEcccccccccccccHHHHHHHHcccEEEEEcccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHccccccEEEEEEEcccEEEEEccccHHHHccccccccccccccHHcccccccccccccccccccHHHHHHccccccEEEEEccccEEEEEccccccccEEEEEEcccccccEEEEccccccEEEEEEEccccEEEEcccEEEEEEccccEEEEEccccccccccccccccccccEEEEcEEEcccccEEEEEEEcccccccccEEEEEEEEcccccccccEEEEEcccccccccccccccEEEEEEEccccccccccEEEEEEEcccccccccEEEEcccccccccEcccccccccEEEEEEEcccccEEEEEccccccccEEccccHHHcccccEEEccccccEccccccccEEEEEEEEcccEEEEEEEcccccEEEcccccccccccEccccEEEEEEcccccccEEEEEEcccccEEEEEEEEEccccccccccccHcccccEEEccccccccEEEEEEEccccccccccccccccEEEEEcccccccccccccccEEEEEcccEEEEEEEcccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
MAISLLSAITTLtrfsassssasinfKYIFSrrtvftaspkrqkqrgckimastspvpetysatqdkitapygswkspltadvvsgaskrlggtavdghgrliwlesrpteagrgvlvkepakagdepsditpkeyAVRTTAqeygggafrifgdtvifsnykdqrlykhsidskdssplpitpdygeplvsyadgifdprfnryvtvREDRRQDALNSTTEIVAIALngqniqepkvlvsgsdfyafprmdprgerMAWIewhhpnmpwdkaELWVGYISENGDVYKRVCvagfdptivesptepkwsskgelffvtdrknGFWNLHKWIESNNEVLAIYSldaefsrplwvfgiNSYEIIQSHGEKNLIACSYRQNGRSYLGILDdfghslslldipftdidnitlgndclfvegasgvepssvakvtlddhklkavdfkvvwssspdtlkyksyfslpeliefptevpgqkayayyyppsnpiyqaspeekppllvkshggptseaRGILNLSIQYWtsrgwafvdvnyggstglssvpstsifv
Flexible Loop (DISEMBL)
MAISLLSAITTltrfsassssasinfkyifsrrtvftaspkrqkqrgckimastspvpetySATQDKITapygswksplTADVVSGASKRlggtavdghgrliwlesrpteagrgvlvkepakagdepsditpkeYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKhsidskdssplpITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIalngqniqepkvlVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPtivesptepkwsskgELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVdfkvvwssspdtlKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGgstglssvpstsifv
Low Complexity Region (SEG)
MAISLLSAITTLTRFsassssasINFKYIFSRRTVFTASPKRQKQRGCKIMASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSVPSTSIFV
Disordered region (IsUnstruct)
******SAITTLTRF******ASINFKYIFSRRTVFT*******************************TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLE*****************************YAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH***********ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPP***************************RGILNLSIQYWTSRGWAFVDVNYGGS*************
Disordered Region (DISOPRED)
********ITTLTRFSASSSSASINFKYIFSRRTV*************************************GSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSVPSTSIFV
Disordered Region (DISEMBL)
MAISLLSAITTLTRFSASSSSASINFKYIFSRRTVFT***********KIMASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSS********
Disordered Region (DISPRO)
MAISLLSAITTLTRFSASSSSASINFKYIFSRRTVFTASP******************************P*GSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSVPSTSIFV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAISLLSAITTLTRFSASSSSASINFKYIFSRRTVFTASPKRQKQRGCKIMASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSVPSTSIFV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	548
255538410	731	acylamino-acid-releasing enzyme, putativ	0.965	0.723	0.715	0.0
224067282	672	predicted protein [Populus trichocarpa]	0.868	0.708	0.778	0.0
225458521	675	PREDICTED: uncharacterized protein LOC10	0.875	0.711	0.774	0.0
225458519	677	PREDICTED: uncharacterized protein LOC10	0.868	0.703	0.773	0.0
356527044	681	PREDICTED: uncharacterized protein LOC10	0.885	0.712	0.747	0.0
357459569	732	Acyl-peptide hydrolase-like protein [Med	0.968	0.725	0.690	0.0
449446971	734	PREDICTED: uncharacterized protein LOC10	0.965	0.720	0.672	0.0
145358557	730	alpha/beta-hydrolase domain-containing p	0.848	0.636	0.751	0.0
9759033	678	acyl-peptide hydrolase-like [Arabidopsis	0.874	0.706	0.730	0.0
297805176	676	predicted protein [Arabidopsis lyrata su	0.874	0.708	0.721	0.0

>gi|255538410|ref|XP_002510270.1| acylamino-acid-releasing enzyme, putative [Ricinus communis] gi|223550971|gb|EEF52457.1| acylamino-acid-releasing enzyme, putative [Ricinus communis]

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/534 (71%), Positives = 444/534 (83%), Gaps = 5/534 (0%)

Query: 7   SAITTLTRFSASSSSASINFKYIFSRRTVFT-ASPKR--QKQRGCKIMASTSPVPETYSA 63
           S+  TLTR S   + +++ FK     R +    S KR  Q+Q   K MAS++  P   ++
Sbjct: 5   SSAITLTRLSYYHTCSTL-FKLSHQIRILTCPISRKRYQQRQHNYKTMASSTQ-PLESAS 62

Query: 64  TQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAK 123
            Q+   APYGSWKSP+TADVVSGASKRLGGTAVDG+GRL WLESRPTEAGR VLVKE  K
Sbjct: 63  KQETTAAPYGSWKSPITADVVSGASKRLGGTAVDGNGRLFWLESRPTEAGRSVLVKEADK 122

Query: 124 AGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPIT 183
            GD+ +DITPK+Y+VR+TAQEYGGGAF I GDTVIF+NYKDQRLYK S+DS+DS P+P+T
Sbjct: 123 QGDKTTDITPKDYSVRSTAQEYGGGAFTISGDTVIFANYKDQRLYKQSVDSRDSPPVPLT 182

Query: 184 PDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243
           PDYG P VSYADG+FD  FNR+VT+ EDRR  ++++ T IV + L+ +NIQEPKVL+SG+
Sbjct: 183 PDYGSPSVSYADGVFDSLFNRFVTIMEDRRLSSMDAVTTIVTVGLSDENIQEPKVLLSGN 242

Query: 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303
           DFYAFPR+DP+GER+AWIEW HPNMPWDK ELWVGYISENGDVYKR+CVAG D  +VESP
Sbjct: 243 DFYAFPRIDPKGERIAWIEWGHPNMPWDKTELWVGYISENGDVYKRICVAGCDTAVVESP 302

Query: 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQ 363
           TEPKWSS GELFF+TDR++GFWNL+KW+ES NEV A+Y L AEFSRPLWVFG NSYE+IQ
Sbjct: 303 TEPKWSSTGELFFITDRRSGFWNLYKWVESVNEVQALYPLAAEFSRPLWVFGTNSYELIQ 362

Query: 364 SHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEP 423
           ++  K+LIACSYRQ GRSYLGILD    SLSLLDIPFTDIDNI+ GN+CL++EGAS V P
Sbjct: 363 NNEGKHLIACSYRQKGRSYLGILDYAESSLSLLDIPFTDIDNISSGNNCLYIEGASAVHP 422

Query: 424 SSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPS 483
            SVAK+ LDD   K  DFK+VWSSSPD+LKY SYFSLPE IEFPTEVPGQ AYAY+YPPS
Sbjct: 423 PSVAKLDLDDRGSKVADFKIVWSSSPDSLKYASYFSLPEFIEFPTEVPGQNAYAYFYPPS 482

Query: 484 NPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537
           NP+YQASPEEKPPLL+KSHGGPT + RGILN SIQYWTSRGWAFVDVNYGGSTG
Sbjct: 483 NPMYQASPEEKPPLLLKSHGGPTGDTRGILNPSIQYWTSRGWAFVDVNYGGSTG 536

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067282|ref|XP_002302446.1| predicted protein [Populus trichocarpa] gi|222844172|gb|EEE81719.1| predicted protein [Populus trichocarpa]

 Score =  788 bits (2036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/488 (77%), Positives = 428/488 (87%), Gaps = 12/488 (2%)

Query: 51  MASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT 110
           MAS++ V +  +A QDKITAPYGSWKSP+TADVVSGASKRLGG AVD HG L W+ESRP+
Sbjct: 1   MASSTQVADA-TAKQDKITAPYGSWKSPITADVVSGASKRLGGIAVDDHGHLFWVESRPS 59

Query: 111 EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170
           E+GR VLV+E  K G+EP+DITPKE+AVRTTAQEYGGGAF I  DTVI+SNYKDQRLYK 
Sbjct: 60  ESGRAVLVREADKPGEEPTDITPKEFAVRTTAQEYGGGAFTISADTVIYSNYKDQRLYKQ 119

Query: 171 SIDSK-DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229
           SI SK DSSP+P+TPDYG P+VSYADG+FD RFNR+VTV EDRR  + NSTT IVA+ L+
Sbjct: 120 SIKSKVDSSPVPLTPDYGGPVVSYADGVFDLRFNRFVTVMEDRRVSSTNSTTTIVAVGLS 179

Query: 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR 289
            ++IQEPKVLVSG+DFYAFPR+DP+GER+AWIEW HPNMPWDK ELWVGYISENGDV+ R
Sbjct: 180 DKSIQEPKVLVSGNDFYAFPRIDPKGERIAWIEWGHPNMPWDKTELWVGYISENGDVHNR 239

Query: 290 VCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR 349
           +CVAG DPT+VESPTEPKWSSKGELFF+TDRK+GFWNL+KWIES NEV AIYSLDAEFS 
Sbjct: 240 ICVAGCDPTLVESPTEPKWSSKGELFFITDRKSGFWNLYKWIESVNEVQAIYSLDAEFST 299

Query: 350 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLG 409
           PLW+FGINSYE+IQ++  KNLIACSYRQNGRS+LGILDD   SLSLLDIPFTDI+++T  
Sbjct: 300 PLWIFGINSYELIQNNEGKNLIACSYRQNGRSFLGILDDVQSSLSLLDIPFTDINHMTSW 359

Query: 410 NDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTE 469
           N CL+VEGAS + PSSVAKV  D          ++WSSSPD+LKYKSYFSLPELIEFPTE
Sbjct: 360 NRCLYVEGASAIHPSSVAKVLQD----------IIWSSSPDSLKYKSYFSLPELIEFPTE 409

Query: 470 VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVD 529
           VPGQ AYAY+YPPSNPIYQAS EEKPPLL+KSHGGPTSE RGILNLSIQYWTSRGWAFVD
Sbjct: 410 VPGQNAYAYFYPPSNPIYQASQEEKPPLLLKSHGGPTSETRGILNLSIQYWTSRGWAFVD 469

Query: 530 VNYGGSTG 537
           VNYGGSTG
Sbjct: 470 VNYGGSTG 477

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458521|ref|XP_002284264.1| PREDICTED: uncharacterized protein LOC100262703 [Vitis vinifera] gi|302142369|emb|CBI19572.3| unnamed protein product [Vitis vinifera]

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/487 (77%), Positives = 425/487 (87%), Gaps = 7/487 (1%)

Query: 51  MASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT 110
           MAST+       + +DK+TAP+GSWKSP+TADVVSGA KRLGGTAVD  GRLI+LESRPT
Sbjct: 1   MASTA-------SAEDKLTAPFGSWKSPITADVVSGAEKRLGGTAVDARGRLIFLESRPT 53

Query: 111 EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170
           E+GR VLVKE  KAG+EP DITPKE++VRT AQEYGGGAF+I GDTVIFSNYKDQRLYK 
Sbjct: 54  ESGRSVLVKESGKAGEEPIDITPKEFSVRTVAQEYGGGAFKISGDTVIFSNYKDQRLYKQ 113

Query: 171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230
           SI S+ SSP PITPDYG P V YADG+FD RF+R++TVREDRR+ +LN  T IVAI L  
Sbjct: 114 SISSEYSSPSPITPDYGGPAVCYADGVFDSRFDRFITVREDRRESSLNPITTIVAIDLRD 173

Query: 231 QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV 290
            NIQEPKVLV+G+DFYAFPR+DP+GER+AWIEW HPNMPWDK ELWVGYISENGD+ KR 
Sbjct: 174 NNIQEPKVLVAGNDFYAFPRLDPKGERLAWIEWSHPNMPWDKTELWVGYISENGDICKRT 233

Query: 291 CVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP 350
           CVAGFDP ++ESPTEPKWSSKGELFF+TDRK+GFWNLH+WIESNNEV+A+YS+DAEF+RP
Sbjct: 234 CVAGFDPKLLESPTEPKWSSKGELFFITDRKSGFWNLHRWIESNNEVVAVYSMDAEFARP 293

Query: 351 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGN 410
           LW+FG+NSYE +QSHG+K LIACSYRQNGRSY+GILD    SLSLLD PFTDI+NIT G 
Sbjct: 294 LWIFGMNSYEFLQSHGQKELIACSYRQNGRSYIGILDAVQSSLSLLDTPFTDINNITSGT 353

Query: 411 DCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEV 470
           +  +VEGAS V P SVAKVTLDD K K VDFK++ SSSPD+ KYKSYFSLPE IEFPTEV
Sbjct: 354 EFFYVEGASTVHPLSVAKVTLDDQKSKVVDFKIIRSSSPDSSKYKSYFSLPEFIEFPTEV 413

Query: 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV 530
           PGQ AYAY+YPPSNPIYQA  EE+PPLL+KSHGGPTSE RGILNLSIQYWTSRGWAFVDV
Sbjct: 414 PGQNAYAYFYPPSNPIYQAGQEERPPLLLKSHGGPTSETRGILNLSIQYWTSRGWAFVDV 473

Query: 531 NYGGSTG 537
           NYGGSTG
Sbjct: 474 NYGGSTG 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458519|ref|XP_002284254.1| PREDICTED: uncharacterized protein LOC100267853 [Vitis vinifera] gi|302142370|emb|CBI19573.3| unnamed protein product [Vitis vinifera]

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/476 (77%), Positives = 417/476 (87%)

Query: 62  SATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEP 121
           +A+QDK+TAPYGSWKSP+TAD+VSGA KRLGGTAVDG GRLIWLE+RPTE+GRGVLVKE 
Sbjct: 7   AASQDKVTAPYGSWKSPITADIVSGADKRLGGTAVDGDGRLIWLETRPTESGRGVLVKES 66

Query: 122 AKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLP 181
             AG EP DITPKE++VRT AQEYGGG F+I G T++FSNY DQRLYK SI S D SP+P
Sbjct: 67  ETAGGEPIDITPKEFSVRTVAQEYGGGDFKISGHTLLFSNYTDQRLYKQSISSGDPSPVP 126

Query: 182 ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS 241
           ITPDYGE  V YADGIFD RF+RYVTVRED R+ +LN +T IVAI L+  NIQEPKVLV 
Sbjct: 127 ITPDYGEQAVRYADGIFDSRFDRYVTVREDSRESSLNPSTTIVAIDLSDNNIQEPKVLVG 186

Query: 242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301
           GSDFYAFPRMD +GER+AWIEW HPNMPWDKAELWVGYISENGD+ KR+CVAG DPT++E
Sbjct: 187 GSDFYAFPRMDSKGERIAWIEWSHPNMPWDKAELWVGYISENGDICKRICVAGCDPTLLE 246

Query: 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEI 361
           SPTEPKWSS+GELFF+TDRK+GFWNL++WIES+NEV+A+Y+LDAEFSRPLWVFGI+SYE 
Sbjct: 247 SPTEPKWSSRGELFFITDRKSGFWNLYRWIESSNEVVAVYALDAEFSRPLWVFGISSYEF 306

Query: 362 IQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGV 421
           +QS G+K LI CSYRQNGRSYLGILD     LS LDIPFTDI+NI+ G DC ++EGAS V
Sbjct: 307 LQSGGQKELIVCSYRQNGRSYLGILDVVNSLLSALDIPFTDINNISSGIDCFYIEGASAV 366

Query: 422 EPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYP 481
            P S+AKVTLDDHK +AV FK++WSSS D  +YKSYFSLPELIEFPTEVPGQ AYAY+YP
Sbjct: 367 HPLSLAKVTLDDHKSEAVGFKIIWSSSADISEYKSYFSLPELIEFPTEVPGQNAYAYFYP 426

Query: 482 PSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537
           PSNPIYQAS +EKPPLL++SHGGPT EA   LNLSIQYWTSRGWAFVDVNYGGSTG
Sbjct: 427 PSNPIYQASQDEKPPLLLESHGGPTDEAHQSLNLSIQYWTSRGWAFVDVNYGGSTG 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527044|ref|XP_003532124.1| PREDICTED: uncharacterized protein LOC100784480 [Glycine max]

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/488 (74%), Positives = 419/488 (85%), Gaps = 3/488 (0%)

Query: 51  MASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT 110
           MAS++    T  +  ++ITAPYGSWKSP+T DVVSGASKRLGGTAVDG GRLIWLESRP 
Sbjct: 1   MASSAAT--TIPSLSERITAPYGSWKSPITTDVVSGASKRLGGTAVDGRGRLIWLESRPA 58

Query: 111 EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170
           E+GRGVLV EP   G E  DITPKE+ VRT AQEYGGGAF + GD V F+NYKDQRLYK 
Sbjct: 59  ESGRGVLVVEPENPGGEAVDITPKEFGVRTVAQEYGGGAFTVSGDVVFFANYKDQRLYKQ 118

Query: 171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230
           SI S D  P+P+TPDYG P+VSYADGI D RFNR+++VREDR + + N TT IV+IAL  
Sbjct: 119 SISSLDVPPIPLTPDYGGPVVSYADGILDVRFNRFISVREDRCESSQNPTTTIVSIALGS 178

Query: 231 QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV 290
           ++ QEP+VLV GSDFYAFPR+DP+ ERMAWI+W HPNMPWDK+ELWVGYISENG++YKRV
Sbjct: 179 KDAQEPQVLVGGSDFYAFPRLDPKSERMAWIQWSHPNMPWDKSELWVGYISENGEIYKRV 238

Query: 291 CVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP 350
           CVAG +P++VESPTEPKWSS GELFF+TDR+NGFWNLHKWIES N+VL +YSL+AEF+RP
Sbjct: 239 CVAGNNPSLVESPTEPKWSSDGELFFITDRENGFWNLHKWIESENKVLPVYSLEAEFARP 298

Query: 351 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-GHSLSLLDIPFTDIDNITLG 409
           LW+FG+NSYE +QSH  KNLIACSYRQ G+SYLGI+DD  G  L++LDIPFTDIDNIT  
Sbjct: 299 LWIFGMNSYEFLQSHTRKNLIACSYRQQGKSYLGIIDDVKGSKLTVLDIPFTDIDNITSS 358

Query: 410 NDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTE 469
           N+ LFVEGAS V PSSVAKVTLD+ K KAVDF ++WSSSPD+LKY SYFS PELIEFPTE
Sbjct: 359 NNYLFVEGASAVHPSSVAKVTLDNDKSKAVDFNIIWSSSPDSLKYSSYFSKPELIEFPTE 418

Query: 470 VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVD 529
           VPGQ AYAY+YPP+NP +QAS EEKPPLL+KSHGGPT+E RGILNLSIQYWTSRGWAFVD
Sbjct: 419 VPGQNAYAYFYPPTNPDFQASEEEKPPLLLKSHGGPTAETRGILNLSIQYWTSRGWAFVD 478

Query: 530 VNYGGSTG 537
           VNYGGSTG
Sbjct: 479 VNYGGSTG 486

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459569|ref|XP_003600065.1| Acyl-peptide hydrolase-like protein [Medicago truncatula] gi|355489113|gb|AES70316.1| Acyl-peptide hydrolase-like protein [Medicago truncatula]

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/543 (69%), Positives = 435/543 (80%), Gaps = 12/543 (2%)

Query: 1   MAISLLSAIT--TLTRFSASSSSASINFKYIFSRRTVFTASPKRQKQRGCKIMASTSPVP 58
           MA    SA+T  TLTR S+SSS  S   K +F+    F++    Q+ R C    ST+   
Sbjct: 1   MATLASSALTLITLTRSSSSSSHYS---KCLFNH---FSSKTHHQRSRFCSFNTSTTKTM 54

Query: 59  ETYS--ATQDKIT-APYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRG 115
            +Y+  +  D IT APYGSWKSP+TADVVSGASKRLGGTAVDG GRLIWLESRPTE+GR 
Sbjct: 55  ASYTPPSESDTITTAPYGSWKSPITADVVSGASKRLGGTAVDGRGRLIWLESRPTESGRA 114

Query: 116 VLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSK 175
           VLV EP   G E  DITPKE+ VRT AQEYGGGAF + GD V F+NYKDQRLYK SI S 
Sbjct: 115 VLVLEPENPGGEAVDITPKEFGVRTLAQEYGGGAFTVAGDVVFFANYKDQRLYKQSITSL 174

Query: 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235
           D  P+P+TPDYG P+VSYADG+ D RFNR++ VREDRR+ + N  T IV+IAL  ++  E
Sbjct: 175 DVPPIPLTPDYGGPVVSYADGVLDTRFNRFIAVREDRRESSQNPPTTIVSIALGSKDDHE 234

Query: 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF 295
           P+VLV GSDFYAFPR+ P+ E++AWI+W HPNMPWDK+ELWVGYISENG++YKRVCVAG 
Sbjct: 235 PEVLVGGSDFYAFPRLGPKSEKIAWIQWSHPNMPWDKSELWVGYISENGEIYKRVCVAGN 294

Query: 296 DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFG 355
           DP++VESPTEPKWSS GELFF+TDR +GFWNLHKWIES N+ + +YSLDAEF+RPLWVFG
Sbjct: 295 DPSVVESPTEPKWSSDGELFFITDRGSGFWNLHKWIESENKAVPVYSLDAEFARPLWVFG 354

Query: 356 INSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-GHSLSLLDIPFTDIDNITLGNDCLF 414
           +NSYE ++S  ++NLIACSYRQ G SYLGI++D  G +LS+LDIPFTDIDNIT G DCLF
Sbjct: 355 MNSYEFVKSPKQRNLIACSYRQKGVSYLGIIEDAQGSNLSVLDIPFTDIDNITSGTDCLF 414

Query: 415 VEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQK 474
           VEGAS V PSSVAKV LDD K K VDF ++WSSSPD+LKY SY S PELIEFPTEVPGQ 
Sbjct: 415 VEGASAVLPSSVAKVALDDKKSKVVDFNIIWSSSPDSLKYSSYISKPELIEFPTEVPGQN 474

Query: 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534
           AYAY+YPPSNP Y+A   EKPPLL+KSHGGPT+E  GILNLSIQYWTSRGWAF DVNYGG
Sbjct: 475 AYAYFYPPSNPTYRAIEGEKPPLLLKSHGGPTAETHGILNLSIQYWTSRGWAFADVNYGG 534

Query: 535 STG 537
           STG
Sbjct: 535 STG 537

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446971|ref|XP_004141243.1| PREDICTED: uncharacterized protein LOC101211004 [Cucumis sativus] gi|449498688|ref|XP_004160606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101226296 [Cucumis sativus]

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/538 (67%), Positives = 435/538 (80%), Gaps = 9/538 (1%)

Query: 7   SAITTLTRFSASSSSASINFKYIFSRRTVFTASPKRQKQRGCKIMA-------STSPVPE 59
            A+  L RF + SS    NF  + +R ++ T S ++Q +   K M        +T+  P 
Sbjct: 4   CALLRLFRFPSPSSLFISNFNPL-NRASINTLSTRKQFRSYNKTMTSSMSSSPNTTNDPP 62

Query: 60  TYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVK 119
             S    KITAPYGSW SP+TADVV+GASKRLGGTAV  +G LIWLESRPTE+GRGVLVK
Sbjct: 63  QLSDQLPKITAPYGSWSSPITADVVTGASKRLGGTAVTANGHLIWLESRPTESGRGVLVK 122

Query: 120 EPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP 179
           E  K GDEP DITPKE++VR T QEYGGGAF + GD V+FSNY DQRLYK S++S D SP
Sbjct: 123 ESVKEGDEPCDITPKEFSVRNTTQEYGGGAFTVAGDIVVFSNYSDQRLYKQSLNS-DLSP 181

Query: 180 LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL 239
             +TPDYG   VSYADG+FD RFNR++TV+ED RQ +LN  T IV++ L+G++I EPKVL
Sbjct: 182 QALTPDYGGRSVSYADGVFDSRFNRFITVQEDGRQSSLNPITTIVSVELDGKDINEPKVL 241

Query: 240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 299
           V G+DFYAFPR+DP+GER+AWIEW HPNMPWDK+ELWVGY+SENG+VYKRVCVAG DP +
Sbjct: 242 VGGNDFYAFPRVDPKGERIAWIEWGHPNMPWDKSELWVGYLSENGEVYKRVCVAGGDPKL 301

Query: 300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSY 359
           VESPTEPKWS++GEL+F+TDR+ GFWNL+KW E+NNEV  IYSL AEFSRPLWVFG NSY
Sbjct: 302 VESPTEPKWSAQGELYFITDRQTGFWNLYKWFEANNEVAPIYSLSAEFSRPLWVFGTNSY 361

Query: 360 EIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGAS 419
           +++++   +N+I CSYRQ GRSYLG+LD+   SLSLLDIPFTDI+NI LG+DC++VEG+S
Sbjct: 362 DLLKTGDGRNIIVCSYRQRGRSYLGVLDETQSSLSLLDIPFTDIENIALGSDCIYVEGSS 421

Query: 420 GVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYY 479
           G+ PSS+AKVTL++  L+ V F ++WSSSPD LK+KSYFSLPE IEFPTEVPGQ AYAY+
Sbjct: 422 GLHPSSIAKVTLNERSLEVVGFTIIWSSSPDILKFKSYFSLPEFIEFPTEVPGQNAYAYF 481

Query: 480 YPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537
           YPPSNP YQASP EKPPLL+KSHGGPT+E RG LN SIQYWTSRGW +VDVNYGGSTG
Sbjct: 482 YPPSNPKYQASPNEKPPLLLKSHGGPTAETRGNLNPSIQYWTSRGWGYVDVNYGGSTG 539

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145358557|ref|NP_198470.3| alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] gi|332006674|gb|AED94057.1| alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana]

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/470 (75%), Positives = 402/470 (85%), Gaps = 5/470 (1%)

Query: 69  TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP 128
           TAPYGSWKSP+TAD+VSGASKRLGGTAVD HGRL+ LESRP E+GRGVLV +    G+  
Sbjct: 69  TAPYGSWKSPITADIVSGASKRLGGTAVDSHGRLVLLESRPNESGRGVLVLQ----GETS 124

Query: 129 SDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG 187
            DITPK++AVRT  QEYGGGAF+I  D T++FSNYKDQRLYK  I  KDSSP PITPDYG
Sbjct: 125 IDITPKDFAVRTLTQEYGGGAFQISSDDTLVFSNYKDQRLYKQDITDKDSSPKPITPDYG 184

Query: 188 EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYA 247
            P V+YADG+FD RFNRYVTVRED RQD  N  T IV + L+G+ ++EPKVLVSG+DFYA
Sbjct: 185 TPAVTYADGVFDSRFNRYVTVREDGRQDRSNPITTIVEVNLSGETLEEPKVLVSGNDFYA 244

Query: 248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307
           FPR+DP+ ER+AWIEW HPNMPWDKAELWVGYISE G++ KRVCVAG DP  VESPTEPK
Sbjct: 245 FPRLDPKCERLAWIEWSHPNMPWDKAELWVGYISEGGNIDKRVCVAGCDPKYVESPTEPK 304

Query: 308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGE 367
           WSS+GELFFVTDRKNG WN+HKWIES NEV+++Y LD EF++PLW+FG NSYEII+   E
Sbjct: 305 WSSRGELFFVTDRKNGCWNIHKWIESTNEVVSVYPLDGEFAKPLWIFGTNSYEIIECSEE 364

Query: 368 KNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVA 427
           KNLIACSYRQ G+SYLGI+DD   S SLLDIP TD D+ITLGN CL+VEGAS V P SVA
Sbjct: 365 KNLIACSYRQKGKSYLGIVDDSQGSCSLLDIPLTDFDSITLGNQCLYVEGASAVLPPSVA 424

Query: 428 KVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIY 487
           +VTLD HK KA+  ++VWSSSPD LKYK+YFS+PELIEFPTEVPGQ AYAY+YPP+NP+Y
Sbjct: 425 RVTLDQHKTKALSSEIVWSSSPDVLKYKAYFSVPELIEFPTEVPGQNAYAYFYPPTNPLY 484

Query: 488 QASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537
            AS EEKPPLLVKSHGGPT+E+RG LNL+IQYWTSRGWAFVDVNYGGSTG
Sbjct: 485 NASMEEKPPLLVKSHGGPTAESRGSLNLNIQYWTSRGWAFVDVNYGGSTG 534

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9759033|dbj|BAB09360.1| acyl-peptide hydrolase-like [Arabidopsis thaliana]

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/490 (73%), Positives = 410/490 (83%), Gaps = 11/490 (2%)

Query: 51  MASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT 110
           M+S+SP     +A     TAPYGSWKSP+TAD+VSGASKRLGGTAVD HGRL+ LESRP 
Sbjct: 1   MSSSSPD----AAQTPLTTAPYGSWKSPITADIVSGASKRLGGTAVDSHGRLVLLESRPN 56

Query: 111 EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLYK 169
           E+GRGVLV +    G+   DITPK++AVRT  QEYGGGAF+I  D T++FSNYKDQRLYK
Sbjct: 57  ESGRGVLVLQ----GETSIDITPKDFAVRTLTQEYGGGAFQISSDDTLVFSNYKDQRLYK 112

Query: 170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229
             I  KDSSP PITPDYG P V+YADG+FD RFNRYVTVRED RQD  N  T IV + L+
Sbjct: 113 QDITDKDSSPKPITPDYGTPAVTYADGVFDSRFNRYVTVREDGRQDRSNPITTIVEVNLS 172

Query: 230 GQNIQ--EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY 287
           G+ ++  EPKVLVSG+DFYAFPR+DP+ ER+AWIEW HPNMPWDKAELWVGYISE G++ 
Sbjct: 173 GETLEDPEPKVLVSGNDFYAFPRLDPKCERLAWIEWSHPNMPWDKAELWVGYISEGGNID 232

Query: 288 KRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF 347
           KRVCVAG DP  VESPTEPKWSS+GELFFVTDRKNG WN+HKWIES NEV+++Y LD EF
Sbjct: 233 KRVCVAGCDPKYVESPTEPKWSSRGELFFVTDRKNGCWNIHKWIESTNEVVSVYPLDGEF 292

Query: 348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNIT 407
           ++PLW+FG NSYEII+   EKNLIACSYRQ G+SYLGI+DD   S SLLDIP TD D+IT
Sbjct: 293 AKPLWIFGTNSYEIIECSEEKNLIACSYRQKGKSYLGIVDDSQGSCSLLDIPLTDFDSIT 352

Query: 408 LGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFP 467
           LGN CL+VEGAS V P SVA+VTLD HK KA+  ++VWSSSPD LKYK+YFS+PELIEFP
Sbjct: 353 LGNQCLYVEGASAVLPPSVARVTLDQHKTKALSSEIVWSSSPDVLKYKAYFSVPELIEFP 412

Query: 468 TEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAF 527
           TEVPGQ AYAY+YPP+NP+Y AS EEKPPLLVKSHGGPT+E+RG LNL+IQYWTSRGWAF
Sbjct: 413 TEVPGQNAYAYFYPPTNPLYNASMEEKPPLLVKSHGGPTAESRGSLNLNIQYWTSRGWAF 472

Query: 528 VDVNYGGSTG 537
           VDVNYGGSTG
Sbjct: 473 VDVNYGGSTG 482

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805176|ref|XP_002870472.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297316308|gb|EFH46731.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/488 (72%), Positives = 405/488 (82%), Gaps = 9/488 (1%)

Query: 51  MASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT 110
           M+S+SP     +A     TAPYGSWKSP+TAD+VSGASKRLGGT VD  GRL+ LESRP 
Sbjct: 1   MSSSSPD----NAQTPLTTAPYGSWKSPITADIVSGASKRLGGTTVDSRGRLVLLESRPN 56

Query: 111 EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLYK 169
           E+GRGVLV +    G+ P DITPK++AVRT  QEYGGGAF+I  D T++FSNYKDQRLYK
Sbjct: 57  ESGRGVLVLQ----GETPIDITPKDFAVRTLTQEYGGGAFQISSDDTLVFSNYKDQRLYK 112

Query: 170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229
             I    SSP PITPDYG P V+YADG+FD RFNRYVTVRED RQD  N  T IV + L+
Sbjct: 113 QHITDNGSSPKPITPDYGAPAVTYADGVFDSRFNRYVTVREDGRQDRSNPITTIVEVNLS 172

Query: 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR 289
           G+ ++EPKVLVSG+DFYAFPR+DP+ ER+AWIEW HPNMPWDKAELWVGYISE G + KR
Sbjct: 173 GETLEEPKVLVSGNDFYAFPRLDPKCERLAWIEWSHPNMPWDKAELWVGYISEGGKIDKR 232

Query: 290 VCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR 349
           VCVAG DP  VESPTEPKWS +GELFFVTDRKNGFW +HKWIES NEV+++Y LD EF++
Sbjct: 233 VCVAGCDPKYVESPTEPKWSPRGELFFVTDRKNGFWIIHKWIESTNEVVSVYPLDGEFAK 292

Query: 350 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLG 409
           PLWVFG NSYEII+   EKN+IACSYRQ G+SYLGI+DD   S SLLDIP TD D+ITLG
Sbjct: 293 PLWVFGTNSYEIIECSEEKNIIACSYRQKGKSYLGIVDDSQGSCSLLDIPLTDFDSITLG 352

Query: 410 NDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTE 469
           N CL+VEGAS V P SVA+VTLD HK+KA+  ++VWSSSPD LKY+++FS+PELIEFPTE
Sbjct: 353 NQCLYVEGASAVLPPSVARVTLDQHKMKALSSEIVWSSSPDVLKYEAFFSVPELIEFPTE 412

Query: 470 VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVD 529
           VPGQ AYAY+YPP+NP Y AS EEKPPLLVKSHGGPT+E+RG LNL+IQYWTSRGWAFVD
Sbjct: 413 VPGQNAYAYFYPPTNPFYNASMEEKPPLLVKSHGGPTAESRGSLNLNIQYWTSRGWAFVD 472

Query: 530 VNYGGSTG 537
           VNYGGSTG
Sbjct: 473 VNYGGSTG 480

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	548
TAIR|locus:2183587	730	AT5G36210 [Arabidopsis thalian	0.968	0.727	0.681	6.4e-202
TIGR_CMR|CBU_1529	636	CBU_1529 "prolyl oligopeptidas	0.656	0.566	0.335	1.1e-50
TIGR_CMR|SO_1686	678	SO_1686 "prolyl oligopeptidase	0.616	0.498	0.302	9.9e-34
DICTYBASE|DDB_G0288631	700	DDB_G0288631 "peptidase S9 fam	0.476	0.372	0.324	2.1e-31
WB|WBGene00001057	643	dpf-4 [Caenorhabditis elegans	0.518	0.441	0.323	3.4e-29
UNIPROTKB|Q88A85	610	PSPTO_0508 "Uncharacterized pr	0.372	0.334	0.281	9.8e-25

TAIR|locus:2183587 AT5G36210 [Arabidopsis thaliana (taxid:3702)]

 Score = 1954 (692.9 bits), Expect = 6.4e-202, P = 6.4e-202
 Identities = 368/540 (68%), Positives = 430/540 (79%)

Query:     1 MAISLLSAITTLTRFXXXXXXXXINFKYIFSRRTVFTASPKRQKQRGCKIMASTSPVPET 60
             MA+ LL+++  L  F               SR   F++S +R  +   K + S + +  +
Sbjct:     1 MALLLLTSLNHLVSFSLTRLPSSSAHNLFLSRS--FSSSIRRFNRFSLKPLRSFASMSSS 58

Query:    61 Y-SATQDKIT-APYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLV 118
                A Q  +T APYGSWKSP+TAD+VSGASKRLGGTAVD HGRL+ LESRP E+GRGVLV
Sbjct:    59 SPDAAQTPLTTAPYGSWKSPITADIVSGASKRLGGTAVDSHGRLVLLESRPNESGRGVLV 118

Query:   119 KEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDS 177
              +    G+   DITPK++AVRT  QEYGGGAF+I  D T++FSNYKDQRLYK  I  KDS
Sbjct:   119 LQ----GETSIDITPKDFAVRTLTQEYGGGAFQISSDDTLVFSNYKDQRLYKQDITDKDS 174

Query:   178 SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK 237
             SP PITPDYG P V+YADG+FD RFNRYVTVRED RQD  N  T IV + L+G+ ++EPK
Sbjct:   175 SPKPITPDYGTPAVTYADGVFDSRFNRYVTVREDGRQDRSNPITTIVEVNLSGETLEEPK 234

Query:   238 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297
             VLVSG+DFYAFPR+DP+ ER+AWIEW HPNMPWDKAELWVGYISE G++ KRVCVAG DP
Sbjct:   235 VLVSGNDFYAFPRLDPKCERLAWIEWSHPNMPWDKAELWVGYISEGGNIDKRVCVAGCDP 294

Query:   298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGIN 357
               VESPTEPKWSS+GELFFVTDRKNG WN+HKWIES NEV+++Y LD EF++PLW+FG N
Sbjct:   295 KYVESPTEPKWSSRGELFFVTDRKNGCWNIHKWIESTNEVVSVYPLDGEFAKPLWIFGTN 354

Query:   358 SYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEG 417
             SYEII+   EKNLIACSYRQ G+SYLGI+DD   S SLLDIP TD D+ITLGN CL+VEG
Sbjct:   355 SYEIIECSEEKNLIACSYRQKGKSYLGIVDDSQGSCSLLDIPLTDFDSITLGNQCLYVEG 414

Query:   418 ASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYA 477
             AS V P SVA+VTLD HK KA+  ++VWSSSPD LKYK+YFS+PELIEFPTEVPGQ AYA
Sbjct:   415 ASAVLPPSVARVTLDQHKTKALSSEIVWSSSPDVLKYKAYFSVPELIEFPTEVPGQNAYA 474

Query:   478 YYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537
             Y+YPP+NP+Y AS EEKPPLLVKSHGGPT+E+RG LNL+IQYWTSRGWAFVDVNYGGSTG
Sbjct:   475 YFYPPTNPLYNASMEEKPPLLVKSHGGPTAESRGSLNLNIQYWTSRGWAFVDVNYGGSTG 534

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TIGR_CMR|CBU_1529 CBU_1529 "prolyl oligopeptidase family protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 132/394 (33%), Positives = 214/394 (54%)

Query:    69 TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGR-LIWLESRPTEAGRGVLVKEPAKAGDE 127
             T+ YG+W+SP++A+  + +S+ L    V+ H   + WLE RP E+GR V+++    +G +
Sbjct:     5 TSSYGTWRSPISAETAAASSRVL--MDVECHDNDIYWLERRPEESGRQVVLR--LSSGGD 60

Query:   128 PSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG 187
                +TP    VRT   EYGGG +R+   T+ F+N  DQR Y+ +      +P P+TP+  
Sbjct:    61 IHAVTPGGVNVRTRVHEYGGGDYRVHRKTIFFANDADQRWYRCT---PGENPQPLTPEPS 117

Query:   188 EPL-VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY 246
             EP  + YAD +  P     + VRE   Q   N   E+VAI  +    Q  KVLV G  FY
Sbjct:   118 EPRGLRYADAVITPDGQWLIAVRESHGQVVDN---ELVAIPTDAS--QRVKVLVQGYHFY 172

Query:   247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306
             A PR++P G +MAW  W+ P MPWD  ELW+  ++   ++     ++G    + E  ++P
Sbjct:   173 AAPRLNPSGTKMAWFCWNQPQMPWDGTELWMADLTTTLELTNAHKISG---GVGEFVSQP 229

Query:   307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHG 366
             ++S +G L+F++D K+GF NL+ +   + +V ++  L+AE   P WVF + +Y+ +    
Sbjct:   230 QFSPEGTLYFLSD-KSGFGNLYCY--EDGKVKSMCPLNAECDSPPWVFKLKTYDFL---- 282

Query:   367 EKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD-IDNITLGNDCLFVEGASGVEPSS 425
             +KN +A      G+  LG+++D G   +  D+PFT  +  + +  D +   GA+   P  
Sbjct:   283 DKNRLAVIVNHKGKQTLGVIED-GR-YTAFDLPFTSFVPTLAVQRDQVIFIGAA---PDR 337

Query:   426 VAKVTLDDHKLKAVDFKVVWSSSPDTL--KYKSY 457
                V   D K K  +  +++ S P T+  KY SY
Sbjct:   338 FPAVVCYDSKNKRTE--ILYESVPLTIDKKYLSY 369

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

TIGR_CMR|SO_1686 SO_1686 "prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 385 (140.6 bits), Expect = 9.9e-34, P = 9.9e-34
 Identities = 109/360 (30%), Positives = 173/360 (48%)

Query:    70 APYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPS 129
             APYGSW+SPL+A  V   +  +      G+  + + ES   + G+ V +K     G    
Sbjct:    40 APYGSWQSPLSAADVFKQTDDIAELQSVGNA-IYFAESSGRDQGK-VGIKRLDGLGKVTQ 97

Query:   130 DITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEP 189
              + P ++ V++T  EYGG AF   G ++  +  +DQ  Y+ +    +  PLP+TP+ G  
Sbjct:    98 VVLP-DFNVKSTVHEYGGAAFLGIGKSLFATKMQDQLFYRFA---PNQPPLPLTPN-G-- 150

Query:   190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFP 249
                +AD +  P+ +R + VRED RQ        +V I LN     E    VSG DF + P
Sbjct:   151 -TRHADCVAYPKGSRIICVREDHRQGG-EPKASLVTINLNFAG--EGDTFVSGHDFISSP 206

Query:   250 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309
              + P   ++AWI W HP MPWD + LW+G +   G + K V      P    S  +P + 
Sbjct:   207 TISPDNTQLAWITWEHPYMPWDNSVLWLGELDRKGQL-KNVRKVS-TPE-ASSVAQPLFG 263

Query:   310 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKN 369
               G+L+ V+D  N +WN+++ +  +  +  + S +AEF+ P W  G ++Y          
Sbjct:   264 PDGKLYVVSDISN-WWNIYR-VTPSYTLEPVLSKNAEFAVPDWRLGNHNYAF---ENATT 318

Query:   370 LIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKV 429
             LIA SY +  R+ L  +         L I F +I  +  G D ++  GA       + +V
Sbjct:   319 LIA-SYVEGNRAALLRIHLDSELTESLAIDFAEITQVVKGEDGVYFVGAKATPEKGIYRV 377

GO:0006508 "proteolysis" evidence=ISS

DICTYBASE|DDB_G0288631 DDB_G0288631 "peptidase S9 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 336 (123.3 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
 Identities = 96/296 (32%), Positives = 151/296 (51%)

Query:   258 MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFF 316
             +A+I W+ PNMPWD + + +  +  N ++       G++    ES   P W+   + L+F
Sbjct:   220 LAYIYWNFPNMPWDNSNVCIKDLKTN-EIIN--ISNGYE----ESVLNPIWNEFDDCLYF 272

Query:   317 VTDRKNGFWNLHKW-IESN--NEVLAIYSLD-AEFSRPLWVFGINSY------EIIQSHG 366
             ++D  NG+W +HK+ ++S   ++V++   +D  E   P+W FG + Y      ++I +  
Sbjct:   273 ISDL-NGYWTIHKYDLKSKKRSQVISSELIDFKEIGEPMWYFGRSYYGFITPSKLIAALA 331

Query:   367 EKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSV 426
             +  L+  +   N    + I + F H  S++  P       +L    LF+ G+S V  S +
Sbjct:   332 DYGLVIFNIETNQVEQI-IRNQFSHVKSIVASP-------SLST-ALFIGGSSTVMFSPI 382

Query:   427 AKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPG----QKAYAYYYPP 482
              K+  +    K  +FK + +         S  S P  IEF T        +KA+AYYYPP
Sbjct:   383 -KLNYNSDSKKC-EFKQLLNVKGGESITDSMISKPIEIEFNTSSKSDNLIEKAFAYYYPP 440

Query:   483 S-NPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537
             +       +    PPLLVKSHGGPT  A  +LN   QYWTSRG+A +DVNY GS+G
Sbjct:   441 TFKKDSSTTTTPPPPLLVKSHGGPTDRAYSVLNYEYQYWTSRGFAILDVNYRGSSG 496

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

WB|WBGene00001057 dpf-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 348 (127.6 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 99/306 (32%), Positives = 152/306 (49%)

Query:   238 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297
             V+  G+DFYA+PR+ P G+++ W++W  PNMPWD+  + +  + + G+    V +   D 
Sbjct:   161 VIAHGADFYAYPRVSPDGKKLVWMQWSLPNMPWDETSIRMADL-KGGESSNEVTLK--DG 217

Query:   298 TIVE-SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFG 355
             T  + + +EP W    EL  V D  N +WN++K     N V   +  +  E S PLW  G
Sbjct:   218 TGKQINYSEPTWDGD-ELLTVNDSTN-WWNVYKSAAEPNSVEKNLNPIQREISYPLWQLG 275

Query:   356 INSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFV 415
               +Y + + +   N     Y ++G   + I    G+++      +  +D    G+D LF 
Sbjct:   276 FRNYVLNKKYLVMNADGILYVRSGDVTVEIPTP-GYTV----FGYLSLDQN--GSD-LFA 327

Query:   416 EGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSY-FSLPELIEFPTEVPGQK 474
               +     SSV  + L +   K    KV    S D+ +  +   S PE  EF  +  G  
Sbjct:   328 IASGPKRASSVISIDLAN---KNFPLKV-HRESRDSSEIDALEISEPE--EFVFKSDGVD 381

Query:   475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534
                Y+YPP N  Y A     PP+L+  HGGPT+ A+  L+L  Q++TSRG A  DVNY G
Sbjct:   382 VSGYFYPPKNCSYSAPAGTLPPVLLLGHGGPTAPAQNNLDLKKQFFTSRGIAVFDVNYRG 441

Query:   535 STGLSS 540
             STG  +
Sbjct:   442 STGFGT 447

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|Q88A85 PSPTO_0508 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 231 (86.4 bits), Expect = 9.8e-25, Sum P(2) = 9.8e-25
 Identities = 62/220 (28%), Positives = 111/220 (50%)

Query:   218 NSTTEIVAIAL-NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELW 276
             ++T  +VAI L +GQ +    +L  G+DFYA P +   G+R+AWIEW  P+ PW ++ L 
Sbjct:   135 HNTHRLVAINLADGQRV----LLAEGADFYASPIVSANGKRLAWIEWQRPHQPWTRSRLM 190

Query:   277 VGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE 336
                  ++G     VC+AG D    ES  +P++ ++  L+ +TDR  GFW    W E+ + 
Sbjct:   191 CAAKQDDGQWGVAVCIAG-DGA-EESLQQPRFDARSRLYCLTDRA-GFWQ--PWGETPSG 245

Query:   337 VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL 396
               A+ +  A+ +   W  G  ++  I        +A S+ Q+G   LG+    G S    
Sbjct:   246 FAALPAASADHASAPWQLGSCTWLPIND----GYLA-SWSQDGSGVLGLCQADG-STEDF 299

Query:   397 DIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436
              + ++   ++ +  + ++   AS V  ++V  ++  DH +
Sbjct:   300 SVGYSRFRSLAVDEEFVYCIAASAVSTAAVLAISRADHSV 339

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_II000592 hypothetical protein (672 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	548
COG1506	620	COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin	2e-16

>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

 Score = 81.8 bits (202), Expect = 2e-16
 Identities = 57/305 (18%), Positives = 101/305 (33%), Gaps = 29/305 (9%)

Query: 235 EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG 294
           +   L  G+        D  G  +A I       PW         I  NG++        
Sbjct: 159 KLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPW--VTNLYVLIEGNGELESLT-PGE 215

Query: 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354
              + +    + K      +  +    +       +I      L +     E    L   
Sbjct: 216 GSISKLAFDADGKS-----IALLGTESDRGLAEGDFI------LLLDGELGEVDGDLSSG 264

Query: 355 G--INSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDC 412
                ++ +        L+  +    G S L  +DD G  +  L      +    +    
Sbjct: 265 DDTRGAWAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDVDGRK 324

Query: 413 LFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPG 472
           L +  +S  EP  +      +        +   +SS ++   K   + PE + + +   G
Sbjct: 325 LALAYSSPTEPPEIYLYDRGE--------EAKLTSSNNSGLKKVKLAEPEPVTYKSN-DG 375

Query: 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY 532
           +  + + Y P        P +K PL+V  HGGP+++     N  IQ   S G+A +  NY
Sbjct: 376 ETIHGWLYKPPGF----DPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNY 431

Query: 533 GGSTG 537
            GSTG
Sbjct: 432 RGSTG 436

Length = 620

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	548
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	100.0
PRK10115	686	protease 2; Provisional	100.0
PRK01029	428	tolB translocation protein TolB; Provisional	99.93
PRK01029	428	tolB translocation protein TolB; Provisional	99.91
PRK05137	435	tolB translocation protein TolB; Provisional	99.9
PRK04043	419	tolB translocation protein TolB; Provisional	99.9
PRK05137	435	tolB translocation protein TolB; Provisional	99.9
PRK03629	429	tolB translocation protein TolB; Provisional	99.9
PRK03629	429	tolB translocation protein TolB; Provisional	99.9
PRK04792	448	tolB translocation protein TolB; Provisional	99.89
PRK04043	419	tolB translocation protein TolB; Provisional	99.89
PRK02889	427	tolB translocation protein TolB; Provisional	99.89
PRK04792	448	tolB translocation protein TolB; Provisional	99.88
PRK04922	433	tolB translocation protein TolB; Provisional	99.88
PRK00178	430	tolB translocation protein TolB; Provisional	99.88
PRK02889	427	tolB translocation protein TolB; Provisional	99.88
PRK00178	430	tolB translocation protein TolB; Provisional	99.88
PRK04922	433	tolB translocation protein TolB; Provisional	99.87
PRK01742	429	tolB translocation protein TolB; Provisional	99.81
PRK01742	429	tolB translocation protein TolB; Provisional	99.8
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.8
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.8
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	99.77
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	99.75
KOG2281	867	consensus Dipeptidyl aminopeptidases/acylaminoacyl	99.74
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	99.73
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	99.71
KOG2100	755	consensus Dipeptidyl aminopeptidase [Posttranslati	99.7
COG1770	682	PtrB Protease II [Amino acid transport and metabol	99.64
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	99.58
KOG2237	712	consensus Predicted serine protease [Posttranslati	99.48
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	99.46
COG4946	668	Uncharacterized protein related to the periplasmic	99.46
COG4946	668	Uncharacterized protein related to the periplasmic	99.36
COG1505	648	Serine proteases of the peptidase family S9A [Amin	99.29
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	99.2
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.11
PRK13616	591	lipoprotein LpqB; Provisional	99.05
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.03
PRK13616	591	lipoprotein LpqB; Provisional	98.93
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.92
PRK11028	330	6-phosphogluconolactonase; Provisional	98.86
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.78
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.7
PRK11028	330	6-phosphogluconolactonase; Provisional	98.7
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.68
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.68
KOG2055	514	consensus WD40 repeat protein [General function pr	98.55
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.47
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.46
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.45
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.43
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.37
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.35
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.34
PRK10115	686	protease 2; Provisional	98.33
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.32
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.26
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.22
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	98.22
KOG2096	420	consensus WD40 repeat protein [General function pr	98.17
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	98.12
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.09
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.08
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.06
PRK05077	414	frsA fermentation/respiration switch protein; Revi	98.05
KOG0315	311	consensus G-protein beta subunit-like protein (con	97.98
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.94
KOG0279	315	consensus G protein beta subunit-like protein [Sig	97.85
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.85
COG3458	321	Acetyl esterase (deacetylase) [Secondary metabolit	97.85
PTZ00421	493	coronin; Provisional	97.81
PTZ00421	493	coronin; Provisional	97.8
PF05448	320	AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0	97.78
KOG0293	519	consensus WD40 repeat-containing protein [Function	97.78
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.68
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.67
TIGR01840	212	esterase_phb esterase, PHB depolymerase family. Th	97.66
PTZ00420	568	coronin; Provisional	97.64
KOG0266	456	consensus WD40 repeat-containing protein [General	97.61
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.59
KOG0266	456	consensus WD40 repeat-containing protein [General	97.59
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.59
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	97.54
KOG0293	519	consensus WD40 repeat-containing protein [Function	97.54
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.54
PRK10566	249	esterase; Provisional	97.52
PRK10162	318	acetyl esterase; Provisional	97.45
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	97.42
PLN02298	330	hydrolase, alpha/beta fold family protein	97.4
KOG2055	514	consensus WD40 repeat protein [General function pr	97.4
PTZ00420	568	coronin; Provisional	97.38
KOG2139	445	consensus WD40 repeat protein [General function pr	97.34
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	97.32
KOG0645	312	consensus WD40 repeat protein [General function pr	97.31
cd00312	493	Esterase_lipase Esterases and lipases (includes fu	97.31
TIGR00976	550	/NonD putative hydrolase, CocE/NonD family. This m	97.26
KOG0772	641	consensus Uncharacterized conserved protein, conta	97.25
PRK13604	307	luxD acyl transferase; Provisional	97.22
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	97.18
TIGR03100	274	hydr1_PEP hydrolase, ortholog 1, exosortase system	97.17
KOG2048	691	consensus WD40 repeat protein [General function pr	97.15
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	97.14
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.12
TIGR02821	275	fghA_ester_D S-formylglutathione hydrolase. This m	97.1
COG1770	682	PtrB Protease II [Amino acid transport and metabol	97.06
PLN02442	283	S-formylglutathione hydrolase	97.05
KOG0296	399	consensus Angio-associated migratory cell protein	97.04
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	97.02
KOG0279	315	consensus G protein beta subunit-like protein [Sig	97.0
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.98
TIGR03101	266	hydr2_PEP hydrolase, ortholog 2, exosortase system	96.95
KOG2139	445	consensus WD40 repeat protein [General function pr	96.94
PLN02385	349	hydrolase; alpha/beta fold family protein	96.89
KOG2315	566	consensus Predicted translation initiation factor	96.86
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	96.81
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	96.8
KOG0315	311	consensus G-protein beta subunit-like protein (con	96.78
PLN00021	313	chlorophyllase	96.78
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	96.75
KOG0973	942	consensus Histone transcription regulator HIRA, WD	96.73
PRK10985	324	putative hydrolase; Provisional	96.73
PF12146	79	Hydrolase_4: Putative lysophospholipase; InterPro:	96.72
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.72
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	96.71
PF02129	272	Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam	96.68
KOG2110	391	consensus Uncharacterized conserved protein, conta	96.67
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	96.63
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.62
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.58
KOG0286	343	consensus G-protein beta subunit [General function	96.57
KOG1274	933	consensus WD40 repeat protein [General function pr	96.56
KOG1274	933	consensus WD40 repeat protein [General function pr	96.55
KOG0288	459	consensus WD40 repeat protein TipD [General functi	96.49
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	96.48
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.45
PHA02857	276	monoglyceride lipase; Provisional	96.45
COG2936	563	Predicted acyl esterases [General function predict	96.44
KOG0318	603	consensus WD40 repeat stress protein/actin interac	96.43
KOG2314	698	consensus Translation initiation factor 3, subunit	96.42
KOG0772	641	consensus Uncharacterized conserved protein, conta	96.41
PLN02652	395	hydrolase; alpha/beta fold family protein	96.39
PF12715	390	Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8	96.39
PLN02872	395	triacylglycerol lipase	96.33
COG2272	491	PnbA Carboxylesterase type B [Lipid metabolism]	96.17
PLN00181	793	protein SPA1-RELATED; Provisional	96.05
KOG1273	405	consensus WD40 repeat protein [General function pr	96.04
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.02
PRK13613	599	lipoprotein LpqB; Provisional	95.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	95.93
KOG0286	343	consensus G-protein beta subunit [General function	95.91
PRK13614	573	lipoprotein LpqB; Provisional	95.8
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	95.76
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	95.75
KOG1407	313	consensus WD40 repeat protein [Function unknown]	95.74
COG4188	365	Predicted dienelactone hydrolase [General function	95.68
KOG0263	707	consensus Transcription initiation factor TFIID, s	95.67
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	95.64
KOG2315	566	consensus Predicted translation initiation factor	95.55
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	95.55
KOG0278	334	consensus Serine/threonine kinase receptor-associa	95.55
PRK10749	330	lysophospholipase L2; Provisional	95.53
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.53
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	95.5
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	95.47
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	95.41
KOG2048	691	consensus WD40 repeat protein [General function pr	95.39
COG0657	312	Aes Esterase/lipase [Lipid metabolism]	95.31
PRK13615	557	lipoprotein LpqB; Provisional	95.31
PLN02511	388	hydrolase	95.29
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.26
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.25
KOG0645	312	consensus WD40 repeat protein [General function pr	95.23
KOG2096	420	consensus WD40 repeat protein [General function pr	95.21
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	95.14
KOG0263	707	consensus Transcription initiation factor TFIID, s	95.05
KOG1515	336	consensus Arylacetamide deacetylase [Defense mecha	95.04
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	94.99
PRK13614	573	lipoprotein LpqB; Provisional	94.89
KOG2281	867	consensus Dipeptidyl aminopeptidases/acylaminoacyl	94.84
KOG2100	755	consensus Dipeptidyl aminopeptidase [Posttranslati	94.8
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	94.79
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	94.77
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.72
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	94.72
PLN00181	793	protein SPA1-RELATED; Provisional	94.65
KOG0275	508	consensus Conserved WD40 repeat-containing protein	94.41
COG3509	312	LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda	94.39
COG0412	236	Dienelactone hydrolase and related enzymes [Second	94.38
KOG0973	942	consensus Histone transcription regulator HIRA, WD	94.36
KOG2314	698	consensus Translation initiation factor 3, subunit	94.34
PF00135	535	COesterase: Carboxylesterase family The prints ent	94.27
KOG1273	405	consensus WD40 repeat protein [General function pr	94.24
PF01738	218	DLH: Dienelactone hydrolase family; InterPro: IPR0	94.22
PRK13613	599	lipoprotein LpqB; Provisional	94.09
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	94.09
PRK02888	635	nitrous-oxide reductase; Validated	93.98
KOG0303	472	consensus Actin-binding protein Coronin, contains	93.88
PF06500	411	DUF1100: Alpha/beta hydrolase of unknown function	93.8
PRK00870	302	haloalkane dehalogenase; Provisional	93.79
KOG2111	346	consensus Uncharacterized conserved protein, conta	93.73
COG3391	381	Uncharacterized conserved protein [Function unknow	93.41
KOG0639	705	consensus Transducin-like enhancer of split protei	93.35
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	93.33
KOG1539	910	consensus WD repeat protein [General function pred	93.31
KOG2106	626	consensus Uncharacterized conserved protein, conta	93.31
PF12740	259	Chlorophyllase2: Chlorophyllase enzyme; InterPro:	93.26
KOG0771	398	consensus Prolactin regulatory element-binding pro	93.24
KOG4178	322	consensus Soluble epoxide hydrolase [Lipid transpo	93.11
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	92.97
KOG0303	472	consensus Actin-binding protein Coronin, contains	92.91
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	92.9
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.86
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	92.83
KOG0296	399	consensus Angio-associated migratory cell protein	92.76
PF12695	145	Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3	92.67
TIGR01249	306	pro_imino_pep_1 proline iminopeptidase, Neisseria-	92.64
COG3391	381	Uncharacterized conserved protein [Function unknow	92.58
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	92.55
KOG4532	344	consensus WD40-like repeat containing protein [Gen	92.53
KOG1455	313	consensus Lysophospholipase [Lipid transport and m	92.49
PF03403	379	PAF-AH_p_II: Platelet-activating factor acetylhydr	92.46
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.34
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	92.29
TIGR01607	332	PST-A Plasmodium subtelomeric family (PST-A). Thes	92.26
KOG0639	705	consensus Transducin-like enhancer of split protei	92.02
TIGR01250	288	pro_imino_pep_2 proline-specific peptidases, Bacil	91.93
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	91.84
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	91.78
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	91.66
KOG0275	508	consensus Conserved WD40 repeat-containing protein	91.64
KOG0282	503	consensus mRNA splicing factor [Function unknown]	91.61
KOG0771	398	consensus Prolactin regulatory element-binding pro	91.6
KOG4391	300	consensus Predicted alpha/beta hydrolase BEM46 [Ge	91.57
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	91.52
KOG0643	327	consensus Translation initiation factor 3, subunit	91.5
PLN02211	273	methyl indole-3-acetate methyltransferase	91.44
PF10503	220	Esterase_phd: Esterase PHB depolymerase	91.38
KOG1539	910	consensus WD repeat protein [General function pred	91.38
KOG0278	334	consensus Serine/threonine kinase receptor-associa	91.11
PRK13615	557	lipoprotein LpqB; Provisional	91.04
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	90.97
KOG2110	391	consensus Uncharacterized conserved protein, conta	90.96
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	90.83
COG2267	298	PldB Lysophospholipase [Lipid metabolism]	90.75
KOG1063	764	consensus RNA polymerase II elongator complex, sub	90.51
PRK05855	582	short chain dehydrogenase; Validated	90.5
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	90.3
KOG0289	506	consensus mRNA splicing factor [General function p	90.28
KOG0284	464	consensus Polyadenylation factor I complex, subuni	90.28
TIGR03343	282	biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die	90.28
PF07224	307	Chlorophyllase: Chlorophyllase; InterPro: IPR01082	90.26
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	90.23
KOG0643	327	consensus Translation initiation factor 3, subunit	90.16
PLN02894	402	hydrolase, alpha/beta fold family protein	89.55
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	89.48
PRK05371	767	x-prolyl-dipeptidyl aminopeptidase; Provisional	89.26
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	89.13
KOG4627	270	consensus Kynurenine formamidase [Amino acid trans	89.12
PRK10439	411	enterobactin/ferric enterobactin esterase; Provisi	89.07
KOG0282	503	consensus mRNA splicing factor [Function unknown]	89.05
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	89.03
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.02
PLN03087	481	BODYGUARD 1 domain containing hydrolase; Provision	89.0
COG0429	345	Predicted hydrolase of the alpha/beta-hydrolase fo	88.76
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	88.68
KOG0647	347	consensus mRNA export protein (contains WD40 repea	88.09
KOG0283	712	consensus WD40 repeat-containing protein [Function	87.8
KOG0310	487	consensus Conserved WD40 repeat-containing protein	87.76
KOG3847	399	consensus Phospholipase A2 (platelet-activating fa	87.64
PF13449	326	Phytase-like: Esterase-like activity of phytase	87.62
TIGR01836	350	PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth	87.61
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	87.53
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	87.53
KOG1214	1289	consensus Nidogen and related basement membrane pr	87.42
TIGR03611	257	RutD pyrimidine utilization protein D. This protei	87.4
TIGR03056	278	bchO_mg_che_rel putative magnesium chelatase acces	87.34
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	87.2
KOG0283	712	consensus WD40 repeat-containing protein [Function	86.79
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	86.79
KOG0289	506	consensus mRNA splicing factor [General function p	86.78
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	86.71
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	85.67
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	85.42
COG2945	210	Predicted hydrolase of the alpha/beta superfamily	85.35
PF06342	297	DUF1057: Alpha/beta hydrolase of unknown function	85.3
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	85.29
TIGR02427	251	protocat_pcaD 3-oxoadipate enol-lactonase. Members	84.79
PRK07581	339	hypothetical protein; Validated	84.39
COG4099	387	Predicted peptidase [General function prediction o	84.35
KOG2106	626	consensus Uncharacterized conserved protein, conta	84.22
PRK10349	256	carboxylesterase BioH; Provisional	83.86
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	83.68
KOG1214	1289	consensus Nidogen and related basement membrane pr	83.61
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	83.23
TIGR02240	276	PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer	82.47
PRK06489	360	hypothetical protein; Provisional	82.37
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	82.23
PF05570	29	DUF765: Circovirus protein of unknown function (DU	82.2
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	82.04
PRK02888	635	nitrous-oxide reductase; Validated	81.8
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	81.79
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	81.67
TIGR01392	351	homoserO_Ac_trn homoserine O-acetyltransferase. Th	81.6
PLN02824	294	hydrolase, alpha/beta fold family protein	81.34
KOG0295	406	consensus WD40 repeat-containing protein [Function	81.06
PRK03204	286	haloalkane dehalogenase; Provisional	81.05
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	80.98
KOG2624	403	consensus Triglyceride lipase-cholesterol esterase	80.85
PHA03098	534	kelch-like protein; Provisional	80.72
KOG2111	346	consensus Uncharacterized conserved protein, conta	80.44
PRK10673	255	acyl-CoA esterase; Provisional	80.36
KOG0288	459	consensus WD40 repeat protein TipD [General functi	80.1

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=100.00  E-value=5e-32  Score=296.51  Aligned_cols=414  Identities=19%  Similarity=0.232  Sum_probs=281.1

Q ss_pred             CcCCHHHHhcCCCccCceEEcC-CCcEEEEEecC---CCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEE
Q 008927           77 SPLTADVVSGASKRLGGTAVDG-HGRLIWLESRP---TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI  152 (548)
Q Consensus        77 spit~~~l~~~~~~~~~~~~sp-g~~i~~~~~~~---~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~  152 (548)
                      .++.++++... +.++++.++| ++.++|+....   ....++.+|..+..   ..+.++... .+       ....|++
T Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~-~~-------~~~~~sp   69 (620)
T COG1506           2 KAFDAEDLLAL-ARVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGK---TVRLLTFGG-GV-------SELRWSP   69 (620)
T ss_pred             CcCCHHHHHhh-hcccCcccCCCCceeEEeeccccccccccccceEEEecc---cccccccCC-cc-------cccccCC
Confidence            46788999998 9999999999 99999997542   12456777774322   233333332 11       1236889


Q ss_pred             ECCEEEEEe-CCC--CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEecc----CC-----------
Q 008927          153 FGDTVIFSN-YKD--QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDR----RQ-----------  214 (548)
Q Consensus       153 ~~~~i~F~~-~~~--~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~----~~-----------  214 (548)
                      ++..++|.+ +..  .++|+++.+   +   .++..    .....+..|+|+|+.+++.....    .+           
T Consensus        70 dg~~~~~~~~~~~~~~~l~l~~~~---g---~~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (620)
T COG1506          70 DGSVLAFVSTDGGRVAQLYLVDVG---G---LITKT----AFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPV  139 (620)
T ss_pred             CCCEEEEEeccCCCcceEEEEecC---C---ceeee----ecccccceeCCCCCeEEEEecccccccCCceeeeecccce
Confidence            999999998 222  489998875   2   22221    12356678999999998842111    00           


Q ss_pred             ---CCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEE
Q 008927          215 ---DALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC  291 (548)
Q Consensus       215 ---~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~  291 (548)
                         ..+..+.++|++|..+ .   ...+..+...+..+++++|++.++.+.......||. ...++.... ++.   ...
T Consensus       140 ~~~~~g~~~~~l~~~d~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~---~~~  210 (620)
T COG1506         140 WFDGRGGERSDLYVVDIES-K---LIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWV-TNLYVLIEG-NGE---LES  210 (620)
T ss_pred             eecCCCCcccceEEEccCc-c---cccccCCCCceeeeeeCCCCceeEEeeeccccCCce-EeeEEEecC-CCc---eEE
Confidence               0012467888888877 4   555655555566778888888887776544323443 233333332 343   344


Q ss_pred             EcCCCCCcccCCcCceECcCCc-EEEEEeCCC-Cee---eEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecC
Q 008927          292 VAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN-GFW---NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHG  366 (548)
Q Consensus       292 l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~-g~~---~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~  366 (548)
                      ++...    ..+..+.|.+||+ +++...... ++.   .++.++.+.++.........+ ....|...   ...     
T Consensus       211 ~~~~~----~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~---~~~-----  277 (620)
T COG1506         211 LTPGE----GSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDD-TRGAWAVE---GGL-----  277 (620)
T ss_pred             EcCCC----ceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCc-ccCcHHhc---ccc-----
Confidence            55543    5678889999999 888765422 222   345555344444331111000 01111110   111     


Q ss_pred             CCCEEEEEEEe-CCeEEEEEEECCCCceEeecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCceeeeeeEEEe
Q 008927          367 EKNLIACSYRQ-NGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVW  445 (548)
Q Consensus       367 d~~~l~~~~~~-~g~~~L~~~dl~~g~~~~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~~~~l  445 (548)
                      +++.+++.... .+...++.++...+....+..+...+..++.+++.+++..+++..|+++|+++. +.+       ..+
T Consensus       278 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~-~~~-------~~~  349 (620)
T COG1506         278 DGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDVDGRKLALAYSSPTEPPEIYLYDR-GEE-------AKL  349 (620)
T ss_pred             CCCcEEEEEecCCCceEEEEEeccCCceeeecCCCceEEEEeeCCCEEEEEecCCCCccceEEEcC-CCc-------eEE
Confidence            56677777766 677778877765555555555556677777799999999999999999999986 332       233


Q ss_pred             cCCCCCCccCCCccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCc
Q 008927          446 SSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW  525 (548)
Q Consensus       446 ~~~~~~~l~~~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGy  525 (548)
                      +..+...+....+.+||.++|++. ||.+|+||+|+|.+  |+  +.|+||+||++||||++++++.|.+++|+|+++||
T Consensus       350 ~~~~~~~~~~~~~~~~e~~~~~~~-dG~~i~~~l~~P~~--~~--~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~  424 (620)
T COG1506         350 TSSNNSGLKKVKLAEPEPVTYKSN-DGETIHGWLYKPPG--FD--PRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGY  424 (620)
T ss_pred             eecccccccccccCCceEEEEEcC-CCCEEEEEEecCCC--CC--CCCCCCEEEEeCCCCccccccccchhhHHHhcCCe
Confidence            344456677888999999999998 99999999999976  54  36779999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCCChhhhhccc
Q 008927          526 AFVDVNYGGSTGLSSVPSTSIF  547 (548)
Q Consensus       526 aVl~~NyRGStGyG~~f~~ai~  547 (548)
                      +|+++|||||+|||++|++++.
T Consensus       425 ~V~~~n~RGS~GyG~~F~~~~~  446 (620)
T COG1506         425 AVLAPNYRGSTGYGREFADAIR  446 (620)
T ss_pred             EEEEeCCCCCCccHHHHHHhhh
Confidence            9999999999999999999875

>PRK10115 protease 2; Provisional

Probab=100.00  E-value=3.1e-30  Score=283.99  Aligned_cols=402  Identities=10%  Similarity=0.058  Sum_probs=262.2

Q ss_pred             ceEEcCCCcEEEEEecCCCCCceEEEEcCC-CCC--CCCcccCC-CCCCccccceeeCCeeeEEECCEEEEEeCCCC---
Q 008927           93 GTAVDGHGRLIWLESRPTEAGRGVLVKEPA-KAG--DEPSDITP-KEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ---  165 (548)
Q Consensus        93 ~~~~spg~~i~~~~~~~~e~gr~~l~~~~~-~~~--~~~~~lt~-~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~---  165 (548)
                      -|... |+..||....+.  .+..||+... .+.  +..+-|.. ..+.....-+..++-.|+||++.|+|..+.++   
T Consensus        76 ~p~~~-g~~~y~~~~~~g--~~~~~~~r~~~~~~~~~~~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~  152 (686)
T PRK10115         76 APYIK-NGYRYRHIYEPG--CEYAIYQRQSAFSEEWDEWETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQ  152 (686)
T ss_pred             CCEEE-CCEEEEEEEcCC--CccEEEEEecCCCCCCCCCEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEE
Confidence            35555 898888875432  2566664432 210  12233332 21211112233455577888999999987654   


Q ss_pred             -eEEEEeCCCCCCC--ceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeec
Q 008927          166 -RLYKHSIDSKDSS--PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG  242 (548)
Q Consensus       166 -~Ly~~~~~~~~~~--~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~  242 (548)
                       +|+++++.+  ++  +..|..      .+. .+.|++||+.|+|+..+...   ....+||+.++.++... .++|.++
T Consensus       153 ~~l~v~d~~t--g~~l~~~i~~------~~~-~~~w~~D~~~~~y~~~~~~~---~~~~~v~~h~lgt~~~~-d~lv~~e  219 (686)
T PRK10115        153 YGIRFRNLET--GNWYPELLDN------VEP-SFVWANDSWTFYYVRKHPVT---LLPYQVWRHTIGTPASQ-DELVYEE  219 (686)
T ss_pred             EEEEEEECCC--CCCCCccccC------cce-EEEEeeCCCEEEEEEecCCC---CCCCEEEEEECCCChhH-CeEEEee
Confidence             799999987  65  344433      233 37899999999997653210   13478999999998311 4566654


Q ss_pred             CC--ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC-CCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEe
Q 008927          243 SD--FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD  319 (548)
Q Consensus       243 ~~--~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~-~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd  319 (548)
                      .+  +......+.||+++.... ...    ..+++++++.+. +++.  ...+.... +  ... .+. ..++.+|+.++
T Consensus       220 ~~~~~~~~~~~s~d~~~l~i~~-~~~----~~~~~~l~~~~~~~~~~--~~~~~~~~-~--~~~-~~~-~~~~~ly~~tn  287 (686)
T PRK10115        220 KDDTFYVSLHKTTSKHYVVIHL-ASA----TTSEVLLLDAELADAEP--FVFLPRRK-D--HEY-SLD-HYQHRFYLRSN  287 (686)
T ss_pred             CCCCEEEEEEEcCCCCEEEEEE-ECC----ccccEEEEECcCCCCCc--eEEEECCC-C--CEE-EEE-eCCCEEEEEEc
Confidence            32  232334455999887433 322    245777777432 2331  22222221 1  111 121 22233888888


Q ss_pred             CCCCeeeEEEEecc-CCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecC
Q 008927          320 RKNGFWNLHKWIES-NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI  398 (548)
Q Consensus       320 ~~~g~~~Ly~~d~~-~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~  398 (548)
                      .+.....|+.+++. .++.+.|.+...     .+..  ..+.+     .++.|++...+++..+|+++++.+++++.|..
T Consensus       288 ~~~~~~~l~~~~~~~~~~~~~l~~~~~-----~~~i--~~~~~-----~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~  355 (686)
T PRK10115        288 RHGKNFGLYRTRVRDEQQWEELIPPRE-----NIML--EGFTL-----FTDWLVVEERQRGLTSLRQINRKTREVIGIAF  355 (686)
T ss_pred             CCCCCceEEEecCCCcccCeEEECCCC-----CCEE--EEEEE-----ECCEEEEEEEeCCEEEEEEEcCCCCceEEecC
Confidence            76677889999886 355566664311     1111  12334     35689999999999999999987777777663


Q ss_pred             CC-ceeEe--ee--ecCCEEEEEEecCCCCCeEEEEEcCCCceeeeeeEEEecCCCCCCccCCCccCCeEEEeeccCCCe
Q 008927          399 PF-TDIDN--IT--LGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQ  473 (548)
Q Consensus       399 ~~-~~~~~--~s--~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~pe~i~~~s~~dG~  473 (548)
                      +. .....  .+  .+++.+++..++...|.++|.+|+++++.      ++|+..+...+++..+ .+|.++|++. ||.
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~------~~l~~~~~~~~~~~~~-~~e~v~~~s~-DG~  427 (686)
T PRK10115        356 DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGER------RVLKQTEVPGFDAANY-RSEHLWITAR-DGV  427 (686)
T ss_pred             CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcE------EEEEecCCCCcCcccc-EEEEEEEECC-CCC
Confidence            21 12222  22  45678999999999999999999988764      3444443344665555 8999999998 999


Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCChhhhhcc
Q 008927          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSVPSTSI  546 (548)
Q Consensus       474 ~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~~f~~ai  546 (548)
                      +|+++|++|++ .+   ..+++|+||++||||+.+..+.|++..|+|++|||+|+.+|+|||+|||++|+++.
T Consensus       428 ~Ip~~l~~~~~-~~---~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g  496 (686)
T PRK10115        428 EVPVSLVYHRK-HF---RKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDG  496 (686)
T ss_pred             EEEEEEEEECC-CC---CCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhh
Confidence            99997665432 12   13567999999999999999999999999999999999999999999999999874

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.93  E-value=4.2e-24  Score=224.16  Aligned_cols=266  Identities=14%  Similarity=0.209  Sum_probs=191.8

Q ss_pred             CccCceEEcCCCcEEEEEecCCCC---CceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCE--EEEEeCC
Q 008927           89 KRLGGTAVDGHGRLIWLESRPTEA---GRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDT--VIFSNYK  163 (548)
Q Consensus        89 ~~~~~~~~spg~~i~~~~~~~~e~---gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~--i~F~~~~  163 (548)
                      +-.+++.+. +.+|+|+..+...+   .++.||.++.+| +++++||.......       .+.|+|||+.  ++|++.+
T Consensus       137 ~~tg~~g~~-~~~iayv~~~~~~~~~~~~~~l~~~d~dG-~~~~~lt~~~~~~~-------sP~wSPDG~~~~~~y~S~~  207 (428)
T PRK01029        137 ALTGVPGIS-SGKIIFSLSTTNSDTELKQGELWSVDYDG-QNLRPLTQEHSLSI-------TPTWMHIGSGFPYLYVSYK  207 (428)
T ss_pred             HHcCCCccc-cCEEEEEEeeCCcccccccceEEEEcCCC-CCceEcccCCCCcc-------cceEccCCCceEEEEEEcc
Confidence            456788888 99999997654322   367999998886 58999997532222       3589999986  6678766


Q ss_pred             C--CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE--EECCCCCccCcEEe
Q 008927          164 D--QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA--IALNGQNIQEPKVL  239 (548)
Q Consensus       164 ~--~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~--idl~~g~~~~~~~L  239 (548)
                      +  .+||++++++  ++.++|+...    .....+.|||||++|+|+.+...      ..+||+  ++++++.....++|
T Consensus       208 ~g~~~I~~~~l~~--g~~~~lt~~~----g~~~~p~wSPDG~~Laf~s~~~g------~~di~~~~~~~~~g~~g~~~~l  275 (428)
T PRK01029        208 LGVPKIFLGSLEN--PAGKKILALQ----GNQLMPTFSPRKKLLAFISDRYG------NPDLFIQSFSLETGAIGKPRRL  275 (428)
T ss_pred             CCCceEEEEECCC--CCceEeecCC----CCccceEECCCCCEEEEEECCCC------CcceeEEEeecccCCCCcceEe
Confidence            5  4899999998  8899999863    22346899999999999864321      234665  46654311116778


Q ss_pred             eecC-CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEE
Q 008927          240 VSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFV  317 (548)
Q Consensus       240 ~~~~-~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~  317 (548)
                      +.+. .....|.|||||++|+|++...     ...+||+++++..+.  ..+.++...    .....|.|||||+ |+|.
T Consensus       276 t~~~~~~~~~p~wSPDG~~Laf~s~~~-----g~~~ly~~~~~~~g~--~~~~lt~~~----~~~~~p~wSPDG~~Laf~  344 (428)
T PRK01029        276 LNEAFGTQGNPSFSPDGTRLVFVSNKD-----GRPRIYIMQIDPEGQ--SPRLLTKKY----RNSSCPAWSPDGKKIAFC  344 (428)
T ss_pred             ecCCCCCcCCeEECCCCCEEEEEECCC-----CCceEEEEECccccc--ceEEeccCC----CCccceeECCCCCEEEEE
Confidence            7553 3346799999999999987322     235899999864332  245555433    3457899999999 8888


Q ss_pred             EeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeec
Q 008927          318 TDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD  397 (548)
Q Consensus       318 sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~  397 (548)
                      +.. .|..+|+++|+++++.+.|+........|.         |+|   |++.|+|.....+...||++|+++++.++|+
T Consensus       345 ~~~-~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~---------wSp---DG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt  411 (428)
T PRK01029        345 SVI-KGVRQICVYDLATGRDYQLTTSPENKESPS---------WAI---DSLHLVYSAGNSNESELYLISLITKKTRKIV  411 (428)
T ss_pred             EcC-CCCcEEEEEECCCCCeEEccCCCCCccceE---------ECC---CCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence            876 677899999999999988875432223344         443   7889998887778889999999999888887


Q ss_pred             CC
Q 008927          398 IP  399 (548)
Q Consensus       398 ~~  399 (548)
                      ..
T Consensus       412 ~~  413 (428)
T PRK01029        412 IG  413 (428)
T ss_pred             cC
Confidence            53

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.91  E-value=2.2e-22  Score=211.23  Aligned_cols=246  Identities=15%  Similarity=0.144  Sum_probs=176.3

Q ss_pred             CCEEEEEeCC--------CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCE--EEEEEeccCCCCCCceeEE
Q 008927          154 GDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR--YVTVREDRRQDALNSTTEI  223 (548)
Q Consensus       154 ~~~i~F~~~~--------~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~--i~~v~~~~~~~~~~~~~~l  223 (548)
                      +.+|+|+...        ..+||++|.+|  +++++||...    .....|.|||||+.  ++|++...      .+.+|
T Consensus       146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG--~~~~~lt~~~----~~~~sP~wSPDG~~~~~~y~S~~~------g~~~I  213 (428)
T PRK01029        146 SGKIIFSLSTTNSDTELKQGELWSVDYDG--QNLRPLTQEH----SLSITPTWMHIGSGFPYLYVSYKL------GVPKI  213 (428)
T ss_pred             cCEEEEEEeeCCcccccccceEEEEcCCC--CCceEcccCC----CCcccceEccCCCceEEEEEEccC------CCceE
Confidence            7789999642        24899999998  8899999862    23567999999987  55675433      24689


Q ss_pred             EEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEE--EecCCCceeeeEEEcCCCCCccc
Q 008927          224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG--YISENGDVYKRVCVAGFDPTIVE  301 (548)
Q Consensus       224 ~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~--~~~~~g~~~~~~~l~~~~~~~~~  301 (548)
                      |++++++|+   .++|+........|+|||||++|+|+....     ...++|+.  +++. +.....+.++... .  .
T Consensus       214 ~~~~l~~g~---~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~-----g~~di~~~~~~~~~-g~~g~~~~lt~~~-~--~  281 (428)
T PRK01029        214 FLGSLENPA---GKKILALQGNQLMPTFSPRKKLLAFISDRY-----GNPDLFIQSFSLET-GAIGKPRRLLNEA-F--G  281 (428)
T ss_pred             EEEECCCCC---ceEeecCCCCccceEECCCCCEEEEEECCC-----CCcceeEEEeeccc-CCCCcceEeecCC-C--C
Confidence            999999998   888886655556799999999999987322     23467775  4442 1111234444322 1  2


Q ss_pred             CCcCceECcCCc-EEEEEeCCCCeeeEEEEecc--CCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC
Q 008927          302 SPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIES--NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (548)
Q Consensus       302 ~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~--~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~  378 (548)
                      ....|.|||||+ |+|.+++ .|..+||+++++  +++.+.|+........|.         |+|   |++.|++....+
T Consensus       282 ~~~~p~wSPDG~~Laf~s~~-~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~---------wSP---DG~~Laf~~~~~  348 (428)
T PRK01029        282 TQGNPSFSPDGTRLVFVSNK-DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPA---------WSP---DGKKIAFCSVIK  348 (428)
T ss_pred             CcCCeEECCCCCEEEEEECC-CCCceEEEEECcccccceEEeccCCCCcccee---------ECC---CCCEEEEEEcCC
Confidence            346799999999 9999988 788899999875  345666764322223333         444   889999988777


Q ss_pred             CeEEEEEEECCCCceEeecCCCceeE--eeeecCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 008927          379 GRSYLGILDDFGHSLSLLDIPFTDID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLK  437 (548)
Q Consensus       379 g~~~L~~~dl~~g~~~~l~~~~~~~~--~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~  437 (548)
                      +..+|+++|+++|+.++|+.......  .+++|++.|+|.... .....||++|+++++.+
T Consensus       349 g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~~~  408 (428)
T PRK01029        349 GVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGN-SNESELYLISLITKKTR  408 (428)
T ss_pred             CCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECC-CCCceEEEEECCCCCEE
Confidence            88899999999999998875422222  347899999887764 34578999999888753

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.90  E-value=1e-21  Score=207.78  Aligned_cols=242  Identities=14%  Similarity=0.168  Sum_probs=181.4

Q ss_pred             CCEEEEEeCCC------CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          154 GDTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       154 ~~~i~F~~~~~------~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      +.+|+|+.+..      .+||++|.+|  ..+++||...    .....+.|||||++|+|++....      ..+||++|
T Consensus       165 ~~~iafv~~~~~~~~~~~~l~~~d~dg--~~~~~lt~~~----~~v~~p~wSpDG~~lay~s~~~g------~~~i~~~d  232 (435)
T PRK05137        165 DTRIVYVAESGPKNKRIKRLAIMDQDG--ANVRYLTDGS----SLVLTPRFSPNRQEITYMSYANG------RPRVYLLD  232 (435)
T ss_pred             CCeEEEEEeeCCCCCcceEEEEECCCC--CCcEEEecCC----CCeEeeEECCCCCEEEEEEecCC------CCEEEEEE
Confidence            45899987543      3899999988  7889999752    24567899999999999865432      36899999


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      +.+|+   .++|+...+....|.|||||++|+|.....     ...+||++++++ ++   .+.++...    .....+.
T Consensus       233 l~~g~---~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~~-~~---~~~Lt~~~----~~~~~~~  296 (435)
T PRK05137        233 LETGQ---RELVGNFPGMTFAPRFSPDGRKVVMSLSQG-----GNTDIYTMDLRS-GT---TTRLTDSP----AIDTSPS  296 (435)
T ss_pred             CCCCc---EEEeecCCCcccCcEECCCCCEEEEEEecC-----CCceEEEEECCC-Cc---eEEccCCC----CccCcee
Confidence            99998   788876665566899999999999876322     246899999984 54   34455443    3456799


Q ss_pred             ECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927          308 WSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (548)
Q Consensus       308 wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~  386 (548)
                      |+|||+ |+|.+++ .|..+||++++++++.++|+........+.         |+|   |++.|++.....+..+|+++
T Consensus       297 ~spDG~~i~f~s~~-~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~---------~Sp---dG~~ia~~~~~~~~~~i~~~  363 (435)
T PRK05137        297 YSPDGSQIVFESDR-SGSPQLYVMNADGSNPRRISFGGGRYSTPV---------WSP---RGDLIAFTKQGGGQFSIGVM  363 (435)
T ss_pred             EcCCCCEEEEEECC-CCCCeEEEEECCCCCeEEeecCCCcccCeE---------ECC---CCCEEEEEEcCCCceEEEEE
Confidence            999999 9999988 778899999999888888875332222333         444   88999888766677899999


Q ss_pred             ECCCCceEeecCCCcee-EeeeecCCEEEEEEecCCCC--CeEEEEEcCCCce
Q 008927          387 DDFGHSLSLLDIPFTDI-DNITLGNDCLFVEGASGVEP--SSVAKVTLDDHKL  436 (548)
Q Consensus       387 dl~~g~~~~l~~~~~~~-~~~s~d~~~l~~~~ss~~~p--~~l~~~d~~~~~~  436 (548)
                      |++++..+.++.+.... -.+++|++.|+|........  ..||++|++++..
T Consensus       364 d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        364 KPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             ECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence            99888777776543221 23478999999888654432  5899999977664

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.90  E-value=2.7e-21  Score=201.65  Aligned_cols=226  Identities=10%  Similarity=0.083  Sum_probs=171.2

Q ss_pred             CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCE-EEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR-YVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (548)
Q Consensus       165 ~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~-i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~  243 (548)
                      .+||++|.+|  .++++++..    . ....+.|||||++ ++|++...+      ..+||++|+.+|+   .++|+...
T Consensus       169 ~~l~~~d~dg--~~~~~~~~~----~-~~~~p~wSpDG~~~i~y~s~~~~------~~~Iyv~dl~tg~---~~~lt~~~  232 (419)
T PRK04043        169 SNIVLADYTL--TYQKVIVKG----G-LNIFPKWANKEQTAFYYTSYGER------KPTLYKYNLYTGK---KEKIASSQ  232 (419)
T ss_pred             ceEEEECCCC--CceeEEccC----C-CeEeEEECCCCCcEEEEEEccCC------CCEEEEEECCCCc---EEEEecCC
Confidence            4999999998  778888875    2 3557899999997 555543321      3589999999998   88998766


Q ss_pred             CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCC
Q 008927          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN  322 (548)
Q Consensus       244 ~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~  322 (548)
                      +....|.|||||++|+|.....     ...+||++++++ |+   .+.++...    .....+.|+|||+ |+|++++ .
T Consensus       233 g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~dl~~-g~---~~~LT~~~----~~d~~p~~SPDG~~I~F~Sdr-~  298 (419)
T PRK04043        233 GMLVVSDVSKDGSKLLLTMAPK-----GQPDIYLYDTNT-KT---LTQITNYP----GIDVNGNFVEDDKRIVFVSDR-L  298 (419)
T ss_pred             CcEEeeEECCCCCEEEEEEccC-----CCcEEEEEECCC-Cc---EEEcccCC----CccCccEECCCCCEEEEEECC-C
Confidence            6667799999999999987432     257999999974 54   34455433    3356789999999 9999998 7


Q ss_pred             CeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC------CeEEEEEEECCCCceEee
Q 008927          323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN------GRSYLGILDDFGHSLSLL  396 (548)
Q Consensus       323 g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~------g~~~L~~~dl~~g~~~~l  396 (548)
                      |..+||++++++|+.++++... .. .         ..|+|   |++.|+++....      +..+|+++|+++|+.++|
T Consensus       299 g~~~Iy~~dl~~g~~~rlt~~g-~~-~---------~~~SP---DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L  364 (419)
T PRK04043        299 GYPNIFMKKLNSGSVEQVVFHG-KN-N---------SSVST---YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL  364 (419)
T ss_pred             CCceEEEEECCCCCeEeCccCC-Cc-C---------ceECC---CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC
Confidence            8899999999999998887421 11 1         23554   899999887653      447999999999999999


Q ss_pred             cCCCce-eEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          397 DIPFTD-IDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       397 ~~~~~~-~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      +..... .-.+++||+.|+|+... .....|+.+++++..
T Consensus       365 T~~~~~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~~  403 (419)
T PRK04043        365 TANGVNQFPRFSSDGGSIMFIKYL-GNQSALGIIRLNYNK  403 (419)
T ss_pred             CCCCCcCCeEECCCCCEEEEEEcc-CCcEEEEEEecCCCe
Confidence            864322 23458999999998754 445679999997765

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.90  E-value=2.1e-21  Score=205.35  Aligned_cols=251  Identities=14%  Similarity=0.150  Sum_probs=182.7

Q ss_pred             CCcEEEEEecCCC-CCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCC--CCeEEEEeCCCC
Q 008927           99 HGRLIWLESRPTE-AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK--DQRLYKHSIDSK  175 (548)
Q Consensus        99 g~~i~~~~~~~~e-~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~--~~~Ly~~~~~~~  175 (548)
                      +.+|+|+..+..+ .-+.+||.++.++ .++++||.....+.       ..+|+|||+.|+|.+..  +.+||++++.+ 
T Consensus       165 ~~~iafv~~~~~~~~~~~~l~~~d~dg-~~~~~lt~~~~~v~-------~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-  235 (435)
T PRK05137        165 DTRIVYVAESGPKNKRIKRLAIMDQDG-ANVRYLTDGSSLVL-------TPRFSPNRQEITYMSYANGRPRVYLLDLET-  235 (435)
T ss_pred             CCeEEEEEeeCCCCCcceEEEEECCCC-CCcEEEecCCCCeE-------eeEECCCCCEEEEEEecCCCCEEEEEECCC-
Confidence            6689999754221 1277999998775 57888886543322       35899999999999754  35899999987 


Q ss_pred             CCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCC
Q 008927          176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRG  255 (548)
Q Consensus       176 ~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDG  255 (548)
                       ++.++|+...    .....+.|||||++|+|.....      ...+||++|+++++   .++|+........|.|||||
T Consensus       236 -g~~~~l~~~~----g~~~~~~~SPDG~~la~~~~~~------g~~~Iy~~d~~~~~---~~~Lt~~~~~~~~~~~spDG  301 (435)
T PRK05137        236 -GQRELVGNFP----GMTFAPRFSPDGRKVVMSLSQG------GNTDIYTMDLRSGT---TTRLTDSPAIDTSPSYSPDG  301 (435)
T ss_pred             -CcEEEeecCC----CcccCcEECCCCCEEEEEEecC------CCceEEEEECCCCc---eEEccCCCCccCceeEcCCC
Confidence             7888888652    2345789999999999875432      13689999999998   88898766556679999999


Q ss_pred             CEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccC
Q 008927          256 ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN  334 (548)
Q Consensus       256 k~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~  334 (548)
                      ++|+|.+.. .    ...+||++++++ ++   .+.++...    .....+.|||||+ |+|.+.. .+..+|+++++++
T Consensus       302 ~~i~f~s~~-~----g~~~Iy~~d~~g-~~---~~~lt~~~----~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~  367 (435)
T PRK05137        302 SQIVFESDR-S----GSPQLYVMNADG-SN---PRRISFGG----GRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDG  367 (435)
T ss_pred             CEEEEEECC-C----CCCeEEEEECCC-CC---eEEeecCC----CcccCeEECCCCCEEEEEEcC-CCceEEEEEECCC
Confidence            999998732 2    245899999873 44   33344322    3456799999999 8887755 5667899999987


Q ss_pred             CeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCe---EEEEEEECCCCceEeecCC
Q 008927          335 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR---SYLGILDDFGHSLSLLDIP  399 (548)
Q Consensus       335 g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~---~~L~~~dl~~g~~~~l~~~  399 (548)
                      ++.+.++.. .....|.         |+|   |++.|+|.....+.   ..||++|++++..+.|..+
T Consensus       368 ~~~~~lt~~-~~~~~p~---------~sp---DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~~  422 (435)
T PRK05137        368 SGERILTSG-FLVEGPT---------WAP---NGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPTP  422 (435)
T ss_pred             CceEeccCC-CCCCCCe---------ECC---CCCEEEEEEccCCCCCcceEEEEECCCCceEEccCC
Confidence            777666532 2223333         444   88899988776554   6899999988887777643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.90  E-value=2.9e-21  Score=203.39  Aligned_cols=240  Identities=14%  Similarity=0.150  Sum_probs=179.5

Q ss_pred             CEEEEEeCCC-----CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927          155 DTVIFSNYKD-----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (548)
Q Consensus       155 ~~i~F~~~~~-----~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~  229 (548)
                      .+|+|+....     .+||++|.+|  .++++||...    .....+.|||||++|+|++...      ...+||++|+.
T Consensus       164 ~riayv~~~~~~~~~~~l~~~d~dg--~~~~~lt~~~----~~~~~p~wSPDG~~la~~s~~~------g~~~i~i~dl~  231 (429)
T PRK03629        164 TRIAYVVQTNGGQFPYELRVSDYDG--YNQFVVHRSP----QPLMSPAWSPDGSKLAYVTFES------GRSALVIQTLA  231 (429)
T ss_pred             CeEEEEEeeCCCCcceeEEEEcCCC--CCCEEeecCC----CceeeeEEcCCCCEEEEEEecC------CCcEEEEEECC
Confidence            5788886432     3899999998  7889998752    3467899999999999986432      23689999999


Q ss_pred             CCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (548)
Q Consensus       230 ~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws  309 (548)
                      +|+   .+.|+...+....|.|||||++|+|+....     ...+||++++++ ++   .+.++...    .....+.|+
T Consensus       232 ~G~---~~~l~~~~~~~~~~~~SPDG~~La~~~~~~-----g~~~I~~~d~~t-g~---~~~lt~~~----~~~~~~~wS  295 (429)
T PRK03629        232 NGA---VRQVASFPRHNGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLAS-GQ---IRQVTDGR----SNNTEPTWF  295 (429)
T ss_pred             CCC---eEEccCCCCCcCCeEECCCCCEEEEEEcCC-----CCcEEEEEECCC-CC---EEEccCCC----CCcCceEEC
Confidence            998   888876666667899999999999986432     235799999984 54   34455433    456789999


Q ss_pred             cCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEEC
Q 008927          310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (548)
Q Consensus       310 pDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl  388 (548)
                      |||+ |+|.+++ .|..+||.+++++++.++++........         ..|+|   |++.|++....++..+|+++|+
T Consensus       296 PDG~~I~f~s~~-~g~~~Iy~~d~~~g~~~~lt~~~~~~~~---------~~~Sp---DG~~Ia~~~~~~g~~~I~~~dl  362 (429)
T PRK03629        296 PDSQNLAYTSDQ-AGRPQVYKVNINGGAPQRITWEGSQNQD---------ADVSS---DGKFMVMVSSNGGQQHIAKQDL  362 (429)
T ss_pred             CCCCEEEEEeCC-CCCceEEEEECCCCCeEEeecCCCCccC---------EEECC---CCCEEEEEEccCCCceEEEEEC
Confidence            9999 9999988 7788999999998888888632111111         33454   8899988877777789999999


Q ss_pred             CCCceEeecCCCcee-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          389 FGHSLSLLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       389 ~~g~~~~l~~~~~~~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      ++++.+.|+...... ..+++|++.|+|.... .....|++++++++..
T Consensus       363 ~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~-~~~~~l~~~~~~G~~~  410 (429)
T PRK03629        363 ATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQ-GMGSVLNLVSTDGRFK  410 (429)
T ss_pred             CCCCeEEeCCCCCCCCceECCCCCEEEEEEcC-CCceEEEEEECCCCCe
Confidence            999999888654222 2348899998887764 3345788889866553

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.90  E-value=4.4e-21  Score=202.01  Aligned_cols=250  Identities=12%  Similarity=0.098  Sum_probs=184.8

Q ss_pred             CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCC--CCeEEEEeCCCCC
Q 008927           99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK--DQRLYKHSIDSKD  176 (548)
Q Consensus        99 g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~--~~~Ly~~~~~~~~  176 (548)
                      .++|+|+..+..++.++.||.++.+| ++.++||.....+       ....|+|||+.|+|...+  +.+||++++++  
T Consensus       163 ~~riayv~~~~~~~~~~~l~~~d~dg-~~~~~lt~~~~~~-------~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~--  232 (429)
T PRK03629        163 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPL-------MSPAWSPDGSKLAYVTFESGRSALVIQTLAN--  232 (429)
T ss_pred             CCeEEEEEeeCCCCcceeEEEEcCCC-CCCEEeecCCCce-------eeeEEcCCCCEEEEEEecCCCcEEEEEECCC--
Confidence            46899997654444578999998775 4788888643221       346899999999998644  35899999987  


Q ss_pred             CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCC
Q 008927          177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE  256 (548)
Q Consensus       177 ~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk  256 (548)
                      ++.++|+...    .....+.|||||++|+|+.....      ..+||++|+++++   .++++.+......|.|||||+
T Consensus       233 G~~~~l~~~~----~~~~~~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~---~~~lt~~~~~~~~~~wSPDG~  299 (429)
T PRK03629        233 GAVRQVASFP----RHNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFPDSQ  299 (429)
T ss_pred             CCeEEccCCC----CCcCCeEECCCCCEEEEEEcCCC------CcEEEEEECCCCC---EEEccCCCCCcCceEECCCCC
Confidence            8888998753    23457899999999999754321      2479999999998   888887665567899999999


Q ss_pred             EEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCC
Q 008927          257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN  335 (548)
Q Consensus       257 ~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g  335 (548)
                      +|+|++.+.     ...+||++++++ ++   .+.++...    .....+.|+|||+ |+|.+.. .+..+||.+|++++
T Consensus       300 ~I~f~s~~~-----g~~~Iy~~d~~~-g~---~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g  365 (429)
T PRK03629        300 NLAYTSDQA-----GRPQVYKVNING-GA---PQRITWEG----SQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATG  365 (429)
T ss_pred             EEEEEeCCC-----CCceEEEEECCC-CC---eEEeecCC----CCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCC
Confidence            999987322     135899999974 54   23343322    3456789999999 8887765 56678999999999


Q ss_pred             eeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecC
Q 008927          336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI  398 (548)
Q Consensus       336 ~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~  398 (548)
                      +.+.|+.. .....|.         |+|   |++.|++....++...|++++++++..+.|..
T Consensus       366 ~~~~Lt~~-~~~~~p~---------~Sp---DG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~  415 (429)
T PRK03629        366 GVQVLTDT-FLDETPS---------IAP---NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA  415 (429)
T ss_pred             CeEEeCCC-CCCCCce---------ECC---CCCEEEEEEcCCCceEEEEEECCCCCeEECcc
Confidence            98888742 1112333         444   88899998887778889999997777777754

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.89  E-value=8.9e-21  Score=200.53  Aligned_cols=251  Identities=12%  Similarity=0.138  Sum_probs=181.8

Q ss_pred             CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC--CeEEEEeCCCCC
Q 008927           99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD  176 (548)
Q Consensus        99 g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~--~~Ly~~~~~~~~  176 (548)
                      ..+|+|+.......-...|+.++.+| .+.+.||.....+       ....|+|||++|+|++.++  .+||++++++  
T Consensus       182 ~~riayv~~~~~~~~~~~l~i~d~dG-~~~~~l~~~~~~~-------~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t--  251 (448)
T PRK04792        182 LTRIAYVVVNDKDKYPYQLMIADYDG-YNEQMLLRSPEPL-------MSPAWSPDGRKLAYVSFENRKAEIFVQDIYT--  251 (448)
T ss_pred             cCEEEEEEeeCCCCCceEEEEEeCCC-CCceEeecCCCcc-------cCceECCCCCEEEEEEecCCCcEEEEEECCC--
Confidence            45788886544322357888887764 4677787653222       2358999999999987554  4899999988  


Q ss_pred             CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCC
Q 008927          177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE  256 (548)
Q Consensus       177 ~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk  256 (548)
                      ++.++|+...    .....+.|||||+.|+|+....      ...+||++|+++++   .++|+........|.|||||+
T Consensus       252 g~~~~lt~~~----g~~~~~~wSPDG~~La~~~~~~------g~~~Iy~~dl~tg~---~~~lt~~~~~~~~p~wSpDG~  318 (448)
T PRK04792        252 QVREKVTSFP----GINGAPRFSPDGKKLALVLSKD------GQPEIYVVDIATKA---LTRITRHRAIDTEPSWHPDGK  318 (448)
T ss_pred             CCeEEecCCC----CCcCCeeECCCCCEEEEEEeCC------CCeEEEEEECCCCC---eEECccCCCCccceEECCCCC
Confidence            7888888652    2234689999999999875432      24689999999998   888887655567899999999


Q ss_pred             EEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCC
Q 008927          257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN  335 (548)
Q Consensus       257 ~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g  335 (548)
                      +|+|.+...     ...+||++++++ |+.   +.++...    .....+.|+|||+ |+|.+.. .+..+||++|++++
T Consensus       319 ~I~f~s~~~-----g~~~Iy~~dl~~-g~~---~~Lt~~g----~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g  384 (448)
T PRK04792        319 SLIFTSERG-----GKPQIYRVNLAS-GKV---SRLTFEG----EQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETG  384 (448)
T ss_pred             EEEEEECCC-----CCceEEEEECCC-CCE---EEEecCC----CCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCC
Confidence            999987322     246899999974 542   3333221    2345689999999 8887766 67789999999999


Q ss_pred             eeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCC
Q 008927          336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP  399 (548)
Q Consensus       336 ~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~  399 (548)
                      +.+.|+....+ ..|.         |.|   +++.|++....++...|++++.+++..+.|+.+
T Consensus       385 ~~~~lt~~~~d-~~ps---------~sp---dG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~  435 (448)
T PRK04792        385 AMQVLTSTRLD-ESPS---------VAP---NGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAG  435 (448)
T ss_pred             CeEEccCCCCC-CCce---------ECC---CCCEEEEEEecCCceEEEEEECCCCceEECcCC
Confidence            88877743211 2233         333   889999998888889999999876666667654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.89  E-value=4.1e-21  Score=200.37  Aligned_cols=246  Identities=10%  Similarity=0.053  Sum_probs=178.3

Q ss_pred             CcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCE-EEEEeCC--CCeEEEEeCCCCC
Q 008927          100 GRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDT-VIFSNYK--DQRLYKHSIDSKD  176 (548)
Q Consensus       100 ~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~-i~F~~~~--~~~Ly~~~~~~~~  176 (548)
                      .+++|+.... ...+..||.++.+| .+++.++....+        -.+.|+|||++ ++|++.+  ..+||++++.+  
T Consensus       155 ~r~~~v~~~~-~~~~~~l~~~d~dg-~~~~~~~~~~~~--------~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t--  222 (419)
T PRK04043        155 KRKVVFSKYT-GPKKSNIVLADYTL-TYQKVIVKGGLN--------IFPKWANKEQTAFYYTSYGERKPTLYKYNLYT--  222 (419)
T ss_pred             eeEEEEEEcc-CCCcceEEEECCCC-CceeEEccCCCe--------EeEEECCCCCcEEEEEEccCCCCEEEEEECCC--
Confidence            4566664321 11378999998885 467878764311        13689999986 7776654  46999999988  


Q ss_pred             CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCC
Q 008927          177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE  256 (548)
Q Consensus       177 ~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk  256 (548)
                      ++.++|+...    .....+.|||||++|+|+....      ...+||++|+++++   .++|+........|.|||||+
T Consensus       223 g~~~~lt~~~----g~~~~~~~SPDG~~la~~~~~~------g~~~Iy~~dl~~g~---~~~LT~~~~~d~~p~~SPDG~  289 (419)
T PRK04043        223 GKKEKIASSQ----GMLVVSDVSKDGSKLLLTMAPK------GQPDIYLYDTNTKT---LTQITNYPGIDVNGNFVEDDK  289 (419)
T ss_pred             CcEEEEecCC----CcEEeeEECCCCCEEEEEEccC------CCcEEEEEECCCCc---EEEcccCCCccCccEECCCCC
Confidence            8899998752    2344578999999999986432      24689999999998   889987765556789999999


Q ss_pred             EEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCC-----CeeeEEEE
Q 008927          257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN-----GFWNLHKW  330 (548)
Q Consensus       257 ~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~-----g~~~Ly~~  330 (548)
                      +|+|++.. .    +..+||++++++ |+   .+.++...    .  ..+.|||||+ |+|++....     +..+||++
T Consensus       290 ~I~F~Sdr-~----g~~~Iy~~dl~~-g~---~~rlt~~g----~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~  354 (419)
T PRK04043        290 RIVFVSDR-L----GYPNIFMKKLNS-GS---VEQVVFHG----K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLI  354 (419)
T ss_pred             EEEEEECC-C----CCceEEEEECCC-CC---eEeCccCC----C--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEE
Confidence            99999833 2    246899999984 54   22333221    2  2369999999 888865421     44789999


Q ss_pred             eccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecC
Q 008927          331 IESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI  398 (548)
Q Consensus       331 d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~  398 (548)
                      ++++++.+.|+.... ...|.         |+|   ||+.|+|....++...|+.+++++.....|..
T Consensus       355 d~~~g~~~~LT~~~~-~~~p~---------~SP---DG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~  409 (419)
T PRK04043        355 STNSDYIRRLTANGV-NQFPR---------FSS---DGGSIMFIKYLGNQSALGIIRLNYNKSFLFPL  409 (419)
T ss_pred             ECCCCCeEECCCCCC-cCCeE---------ECC---CCCEEEEEEccCCcEEEEEEecCCCeeEEeec
Confidence            999999999985321 12343         444   88999999888888999999998766666654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.89  E-value=1.6e-20  Score=197.84  Aligned_cols=248  Identities=15%  Similarity=0.192  Sum_probs=179.6

Q ss_pred             CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC--CeEEEEeCCCCC
Q 008927           99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD  176 (548)
Q Consensus        99 g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~--~~Ly~~~~~~~~  176 (548)
                      ..+|+|+...   .++..||.++.+| ..+++++.....+       ...+|+|||+.|+|.+.++  .+||++++.+  
T Consensus       163 ~~~iayv~~~---~~~~~L~~~D~dG-~~~~~l~~~~~~v-------~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~--  229 (427)
T PRK02889        163 STRIAYVIKT---GNRYQLQISDADG-QNAQSALSSPEPI-------ISPAWSPDGTKLAYVSFESKKPVVYVHDLAT--  229 (427)
T ss_pred             ccEEEEEEcc---CCccEEEEECCCC-CCceEeccCCCCc-------ccceEcCCCCEEEEEEccCCCcEEEEEECCC--
Confidence            4578888632   4678899888764 4677887543222       2458999999999998654  4799999987  


Q ss_pred             CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCC
Q 008927          177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE  256 (548)
Q Consensus       177 ~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk  256 (548)
                      ++.++|+...    .....+.|||||+.|+|.....      ...+||.+|+.++.   .++|+........|.|||||+
T Consensus       230 g~~~~l~~~~----g~~~~~~~SPDG~~la~~~~~~------g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~  296 (427)
T PRK02889        230 GRRRVVANFK----GSNSAPAWSPDGRTLAVALSRD------GNSQIYTVNADGSG---LRRLTQSSGIDTEPFFSPDGR  296 (427)
T ss_pred             CCEEEeecCC----CCccceEECCCCCEEEEEEccC------CCceEEEEECCCCC---cEECCCCCCCCcCeEEcCCCC
Confidence            7788887652    2345789999999999865432      23689999999988   888887655556789999999


Q ss_pred             EEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCC
Q 008927          257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN  335 (548)
Q Consensus       257 ~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g  335 (548)
                      +|+|++ +..    ...+||++++++ +.   .+.++...    .....+.|||||+ |+|.+.. .+..+|++++++++
T Consensus       297 ~l~f~s-~~~----g~~~Iy~~~~~~-g~---~~~lt~~g----~~~~~~~~SpDG~~Ia~~s~~-~g~~~I~v~d~~~g  362 (427)
T PRK02889        297 SIYFTS-DRG----GAPQIYRMPASG-GA---AQRVTFTG----SYNTSPRISPDGKLLAYISRV-GGAFKLYVQDLATG  362 (427)
T ss_pred             EEEEEe-cCC----CCcEEEEEECCC-Cc---eEEEecCC----CCcCceEECCCCCEEEEEEcc-CCcEEEEEEECCCC
Confidence            999986 322    245899999873 43   22233221    2345789999999 8888766 56679999999999


Q ss_pred             eeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCC
Q 008927          336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP  399 (548)
Q Consensus       336 ~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~  399 (548)
                      +.+.++.... ...|.         |.|   |++.|++....+|...|+.+++++...+.+..+
T Consensus       363 ~~~~lt~~~~-~~~p~---------~sp---dg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~  413 (427)
T PRK02889        363 QVTALTDTTR-DESPS---------FAP---NGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQ  413 (427)
T ss_pred             CeEEccCCCC-ccCce---------ECC---CCCEEEEEEecCCCEEEEEEECCCCceEEeecC
Confidence            8888874321 12333         444   889999999888999999999965555566544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.88  E-value=2.3e-20  Score=197.42  Aligned_cols=239  Identities=15%  Similarity=0.183  Sum_probs=176.0

Q ss_pred             CEEEEEeCCC-----CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927          155 DTVIFSNYKD-----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (548)
Q Consensus       155 ~~i~F~~~~~-----~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~  229 (548)
                      .+|+|+....     .+||++|.+|  .+.+.||...    .....+.|||||++|+|++...      ...+||++|+.
T Consensus       183 ~riayv~~~~~~~~~~~l~i~d~dG--~~~~~l~~~~----~~~~~p~wSPDG~~La~~s~~~------g~~~L~~~dl~  250 (448)
T PRK04792        183 TRIAYVVVNDKDKYPYQLMIADYDG--YNEQMLLRSP----EPLMSPAWSPDGRKLAYVSFEN------RKAEIFVQDIY  250 (448)
T ss_pred             CEEEEEEeeCCCCCceEEEEEeCCC--CCceEeecCC----CcccCceECCCCCEEEEEEecC------CCcEEEEEECC
Confidence            3677775432     3899999987  7788898762    3567889999999999986542      24689999999


Q ss_pred             CCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (548)
Q Consensus       230 ~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws  309 (548)
                      +++   .++++...+....|.|||||++|+|+....     ...+||++++++ ++   .+.++...    .....|.|+
T Consensus       251 tg~---~~~lt~~~g~~~~~~wSPDG~~La~~~~~~-----g~~~Iy~~dl~t-g~---~~~lt~~~----~~~~~p~wS  314 (448)
T PRK04792        251 TQV---REKVTSFPGINGAPRFSPDGKKLALVLSKD-----GQPEIYVVDIAT-KA---LTRITRHR----AIDTEPSWH  314 (448)
T ss_pred             CCC---eEEecCCCCCcCCeeECCCCCEEEEEEeCC-----CCeEEEEEECCC-CC---eEECccCC----CCccceEEC
Confidence            998   778876555556799999999999876332     246899999984 54   33444432    345679999


Q ss_pred             cCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEEC
Q 008927          310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (548)
Q Consensus       310 pDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl  388 (548)
                      |||+ |+|.+++ .|..+||++++++++.++|+........+         .|+|   |++.|++....++..+|+++|+
T Consensus       315 pDG~~I~f~s~~-~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~---------~~Sp---DG~~l~~~~~~~g~~~I~~~dl  381 (448)
T PRK04792        315 PDGKSLIFTSER-GGKPQIYRVNLASGKVSRLTFEGEQNLGG---------SITP---DGRSMIMVNRTNGKFNIARQDL  381 (448)
T ss_pred             CCCCEEEEEECC-CCCceEEEEECCCCCEEEEecCCCCCcCe---------eECC---CCCEEEEEEecCCceEEEEEEC
Confidence            9999 9999988 77789999999999988886321111112         3444   8889998877777889999999


Q ss_pred             CCCceEeecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          389 FGHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       389 ~~g~~~~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      ++++.+.|+....+.. .+++|++.|+|.... .....||+++.+++.
T Consensus       382 ~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~-~g~~~l~~~~~~G~~  428 (448)
T PRK04792        382 ETGAMQVLTSTRLDESPSVAPNGTMVIYSTTY-QGKQVLAAVSIDGRF  428 (448)
T ss_pred             CCCCeEEccCCCCCCCceECCCCCEEEEEEec-CCceEEEEEECCCCc
Confidence            9999888875432222 358899999887754 334579999986554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.88  E-value=3.5e-20  Score=195.86  Aligned_cols=251  Identities=14%  Similarity=0.141  Sum_probs=182.1

Q ss_pred             CCcEEEEEecC-CCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC--CeEEEEeCCCC
Q 008927           99 HGRLIWLESRP-TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSK  175 (548)
Q Consensus        99 g~~i~~~~~~~-~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~--~~Ly~~~~~~~  175 (548)
                      +.+|+|+.... ..+.+..||.++.++ +++++||.....+       ....|+|||+.|+|.+..+  .+||++++++ 
T Consensus       167 ~~~ia~v~~~~~~~~~~~~l~i~D~~g-~~~~~lt~~~~~v-------~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-  237 (433)
T PRK04922        167 WTRIAYVTVSGAGGAMRYALQVADSDG-YNPQTILRSAEPI-------LSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-  237 (433)
T ss_pred             cceEEEEEEeCCCCCceEEEEEECCCC-CCceEeecCCCcc-------ccccCCCCCCEEEEEecCCCCcEEEEEECCC-
Confidence            66898986543 223467898888764 5788888653222       2458999999999997554  4899999987 


Q ss_pred             CCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCC
Q 008927          176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRG  255 (548)
Q Consensus       176 ~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDG  255 (548)
                       ++.++|+...    .....+.|||||++|+|+....+      ..+||++|+++++   .++++........|.|||||
T Consensus       238 -g~~~~l~~~~----g~~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~spDG  303 (433)
T PRK04922        238 -GQRELVASFR----GINGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQ---LTRLTNHFGIDTEPTWAPDG  303 (433)
T ss_pred             -CCEEEeccCC----CCccCceECCCCCEEEEEEeCCC------CceEEEEECCCCC---eEECccCCCCccceEECCCC
Confidence             7788887652    23446899999999998754331      3589999999998   88888665445678999999


Q ss_pred             CEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccC
Q 008927          256 ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN  334 (548)
Q Consensus       256 k~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~  334 (548)
                      ++|+|.+. ..    ...+||++++++ ++   .+.++...    .....+.|||||+ |+|.+.. .+..+|+.+++.+
T Consensus       304 ~~l~f~sd-~~----g~~~iy~~dl~~-g~---~~~lt~~g----~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~  369 (433)
T PRK04922        304 KSIYFTSD-RG----GRPQIYRVAASG-GS---AERLTFQG----NYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLST  369 (433)
T ss_pred             CEEEEEEC-CC----CCceEEEEECCC-CC---eEEeecCC----CCccCEEECCCCCEEEEEECC-CCceeEEEEECCC
Confidence            99999873 22    135899999874 54   22333222    2345799999999 8887655 5667999999999


Q ss_pred             CeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCC
Q 008927          335 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP  399 (548)
Q Consensus       335 g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~  399 (548)
                      ++.+.|+.... ...|.         |+|   |++.|++.....+...||.++++++..+.|+.+
T Consensus       370 g~~~~Lt~~~~-~~~p~---------~sp---dG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~  421 (433)
T PRK04922        370 GSVRTLTPGSL-DESPS---------FAP---NGSMVLYATREGGRGVLAAVSTDGRVRQRLVSA  421 (433)
T ss_pred             CCeEECCCCCC-CCCce---------ECC---CCCEEEEEEecCCceEEEEEECCCCceEEcccC
Confidence            98888874321 12233         443   888999998888889999999987777777653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.88  E-value=3.5e-20  Score=196.06  Aligned_cols=251  Identities=13%  Similarity=0.187  Sum_probs=182.1

Q ss_pred             CCcEEEEEecC-CCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC--CeEEEEeCCCC
Q 008927           99 HGRLIWLESRP-TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSK  175 (548)
Q Consensus        99 g~~i~~~~~~~-~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~--~~Ly~~~~~~~  175 (548)
                      ..+|+|+.... .++++..|+.++.+| +++++++.....+       ....|+|||+.|+|++.++  .+||++++++ 
T Consensus       162 ~~~ia~v~~~~~~~~~~~~l~~~d~~g-~~~~~l~~~~~~~-------~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~-  232 (430)
T PRK00178        162 STRILYVTAERFSVNTRYTLQRSDYDG-ARAVTLLQSREPI-------LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT-  232 (430)
T ss_pred             eeeEEEEEeeCCCCCcceEEEEECCCC-CCceEEecCCCce-------eeeeECCCCCEEEEEEcCCCCCEEEEEECCC-
Confidence            56788886433 234577898888774 4677787543221       2357999999999997654  4899999998 


Q ss_pred             CCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCC
Q 008927          176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRG  255 (548)
Q Consensus       176 ~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDG  255 (548)
                       ++.++|+...    .....+.|||||++|+|.....+      ..+||++|+++++   .++|+........|.|||||
T Consensus       233 -g~~~~l~~~~----g~~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~~spDg  298 (430)
T PRK00178        233 -GRREQITNFE----GLNGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQ---LSRVTNHPAIDTEPFWGKDG  298 (430)
T ss_pred             -CCEEEccCCC----CCcCCeEECCCCCEEEEEEccCC------CceEEEEECCCCC---eEEcccCCCCcCCeEECCCC
Confidence             7888888652    23446899999999998754321      3689999999998   78888765556679999999


Q ss_pred             CEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccC
Q 008927          256 ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN  334 (548)
Q Consensus       256 k~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~  334 (548)
                      ++|+|.+. ..    ...+||++++++ |+.   +.++...    .....+.|+|||+ |+|.+.. .+..+|+++|+++
T Consensus       299 ~~i~f~s~-~~----g~~~iy~~d~~~-g~~---~~lt~~~----~~~~~~~~Spdg~~i~~~~~~-~~~~~l~~~dl~t  364 (430)
T PRK00178        299 RTLYFTSD-RG----GKPQIYKVNVNG-GRA---ERVTFVG----NYNARPRLSADGKTLVMVHRQ-DGNFHVAAQDLQR  364 (430)
T ss_pred             CEEEEEEC-CC----CCceEEEEECCC-CCE---EEeecCC----CCccceEECCCCCEEEEEEcc-CCceEEEEEECCC
Confidence            99999863 22    135899999874 542   2233221    2345789999999 8887765 5677899999999


Q ss_pred             CeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCC
Q 008927          335 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP  399 (548)
Q Consensus       335 g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~  399 (548)
                      ++.+.|+....+ ..|.         |+|   |++.|+|+...+++..|+.++++++..+.|..+
T Consensus       365 g~~~~lt~~~~~-~~p~---------~sp---dg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~  416 (430)
T PRK00178        365 GSVRILTDTSLD-ESPS---------VAP---NGTMLIYATRQQGRGVLMLVSINGRVRLPLPTA  416 (430)
T ss_pred             CCEEEccCCCCC-CCce---------ECC---CCCEEEEEEecCCceEEEEEECCCCceEECcCC
Confidence            988888743221 2233         443   889999998888999999999976666666543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.88  E-value=5.8e-20  Score=193.64  Aligned_cols=239  Identities=15%  Similarity=0.143  Sum_probs=175.6

Q ss_pred             CEEEEEeCCC--CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCC
Q 008927          155 DTVIFSNYKD--QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (548)
Q Consensus       155 ~~i~F~~~~~--~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~  232 (548)
                      .+|+|.....  .+||++|.+|  ..+++++...    .....+.|||||++|+|++...      ...+||++|+.+|+
T Consensus       164 ~~iayv~~~~~~~~L~~~D~dG--~~~~~l~~~~----~~v~~p~wSPDG~~la~~s~~~------~~~~I~~~dl~~g~  231 (427)
T PRK02889        164 TRIAYVIKTGNRYQLQISDADG--QNAQSALSSP----EPIISPAWSPDGTKLAYVSFES------KKPVVYVHDLATGR  231 (427)
T ss_pred             cEEEEEEccCCccEEEEECCCC--CCceEeccCC----CCcccceEcCCCCEEEEEEccC------CCcEEEEEECCCCC
Confidence            5788887543  4899999987  7788887652    3466889999999999985432      23579999999998


Q ss_pred             ccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCC
Q 008927          233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (548)
Q Consensus       233 ~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG  312 (548)
                         .++++...+....|.|||||++|+|.....     ...+||+++++. +.   .+.++...    .....+.|+|||
T Consensus       232 ---~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~~-~~---~~~lt~~~----~~~~~~~wSpDG  295 (427)
T PRK02889        232 ---RRVVANFKGSNSAPAWSPDGRTLAVALSRD-----GNSQIYTVNADG-SG---LRRLTQSS----GIDTEPFFSPDG  295 (427)
T ss_pred             ---EEEeecCCCCccceEECCCCCEEEEEEccC-----CCceEEEEECCC-CC---cEECCCCC----CCCcCeEEcCCC
Confidence               778875555567899999999999876322     246899999873 43   34454432    345678999999


Q ss_pred             c-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCC
Q 008927          313 E-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH  391 (548)
Q Consensus       313 ~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g  391 (548)
                      + |+|.+++ .|..+||.+++++++.++++........+         .|+|   |++.|++....++..+|+++|++++
T Consensus       296 ~~l~f~s~~-~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~---------~~Sp---DG~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        296 RSIYFTSDR-GGAPQIYRMPASGGAAQRVTFTGSYNTSP---------RISP---DGKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             CEEEEEecC-CCCcEEEEEECCCCceEEEecCCCCcCce---------EECC---CCCEEEEEEccCCcEEEEEEECCCC
Confidence            9 9999988 77889999999888887776321111122         3444   8899998877777789999999999


Q ss_pred             ceEeecCCCce-eEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          392 SLSLLDIPFTD-IDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       392 ~~~~l~~~~~~-~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      +.+.|+..... .-.+++|++.|+|..... ....||.+++++..
T Consensus       363 ~~~~lt~~~~~~~p~~spdg~~l~~~~~~~-g~~~l~~~~~~g~~  406 (427)
T PRK02889        363 QVTALTDTTRDESPSFAPNGRYILYATQQG-GRSVLAAVSSDGRI  406 (427)
T ss_pred             CeEEccCCCCccCceECCCCCEEEEEEecC-CCEEEEEEECCCCc
Confidence            98888754222 223478999998887654 34679999985443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.88  E-value=4e-20  Score=195.62  Aligned_cols=240  Identities=15%  Similarity=0.212  Sum_probs=176.3

Q ss_pred             CCEEEEEeCCC------CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          154 GDTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       154 ~~~i~F~~~~~------~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      ..+|+|+....      .+||++|.+|  +.+++|+...    .....+.|||||++|+|++.+.      ...+||++|
T Consensus       162 ~~~ia~v~~~~~~~~~~~~l~~~d~~g--~~~~~l~~~~----~~~~~p~wSpDG~~la~~s~~~------~~~~l~~~~  229 (430)
T PRK00178        162 STRILYVTAERFSVNTRYTLQRSDYDG--ARAVTLLQSR----EPILSPRWSPDGKRIAYVSFEQ------KRPRIFVQN  229 (430)
T ss_pred             eeeEEEEEeeCCCCCcceEEEEECCCC--CCceEEecCC----CceeeeeECCCCCEEEEEEcCC------CCCEEEEEE
Confidence            34688875321      2699999997  7788887652    3456789999999999986432      246899999


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      +++|+   .++|+...+....|.|||||++|+|.....     ...+||++++++ ++   .+.++...    .....|.
T Consensus       230 l~~g~---~~~l~~~~g~~~~~~~SpDG~~la~~~~~~-----g~~~Iy~~d~~~-~~---~~~lt~~~----~~~~~~~  293 (430)
T PRK00178        230 LDTGR---REQITNFEGLNGAPAWSPDGSKLAFVLSKD-----GNPEIYVMDLAS-RQ---LSRVTNHP----AIDTEPF  293 (430)
T ss_pred             CCCCC---EEEccCCCCCcCCeEECCCCCEEEEEEccC-----CCceEEEEECCC-CC---eEEcccCC----CCcCCeE
Confidence            99998   788876555556799999999999876332     246899999984 54   34455433    3456789


Q ss_pred             ECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927          308 WSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (548)
Q Consensus       308 wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~  386 (548)
                      |+|||+ |+|.+++ .|..+||.+++++++.++++........+         .|+|   |++.|++....++..+|+++
T Consensus       294 ~spDg~~i~f~s~~-~g~~~iy~~d~~~g~~~~lt~~~~~~~~~---------~~Sp---dg~~i~~~~~~~~~~~l~~~  360 (430)
T PRK00178        294 WGKDGRTLYFTSDR-GGKPQIYKVNVNGGRAERVTFVGNYNARP---------RLSA---DGKTLVMVHRQDGNFHVAAQ  360 (430)
T ss_pred             ECCCCCEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCccce---------EECC---CCCEEEEEEccCCceEEEEE
Confidence            999999 9999988 78889999999999888886321111112         3444   88999988777777889999


Q ss_pred             ECCCCceEeecCCCcee-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          387 DDFGHSLSLLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       387 dl~~g~~~~l~~~~~~~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      |+++++.+.|+....+. ..+++|++.++|..... ....||.++++++.
T Consensus       361 dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~-g~~~l~~~~~~g~~  409 (430)
T PRK00178        361 DLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQ-GRGVLMLVSINGRV  409 (430)
T ss_pred             ECCCCCEEEccCCCCCCCceECCCCCEEEEEEecC-CceEEEEEECCCCc
Confidence            99999988887543222 23588999888877543 34679999986554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.87  E-value=4.3e-20  Score=195.13  Aligned_cols=240  Identities=16%  Similarity=0.180  Sum_probs=177.0

Q ss_pred             CCEEEEEeCC------CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          154 GDTVIFSNYK------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       154 ~~~i~F~~~~------~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      +.+|+|+...      ..+||++|.++  .++++||...    .....+.|||||+.|+|++...      ...+||++|
T Consensus       167 ~~~ia~v~~~~~~~~~~~~l~i~D~~g--~~~~~lt~~~----~~v~~p~wSpDg~~la~~s~~~------~~~~l~~~d  234 (433)
T PRK04922        167 WTRIAYVTVSGAGGAMRYALQVADSDG--YNPQTILRSA----EPILSPAWSPDGKKLAYVSFER------GRSAIYVQD  234 (433)
T ss_pred             cceEEEEEEeCCCCCceEEEEEECCCC--CCceEeecCC----CccccccCCCCCCEEEEEecCC------CCcEEEEEE
Confidence            3468887532      13799999987  7889998762    3467889999999999986432      236899999


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      +.+++   .++++........|+|||||++|+|.....     ...+||++++++ |+   .+.++...    .....+.
T Consensus       235 l~~g~---~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~-----g~~~Iy~~d~~~-g~---~~~lt~~~----~~~~~~~  298 (433)
T PRK04922        235 LATGQ---RELVASFRGINGAPSFSPDGRRLALTLSRD-----GNPEIYVMDLGS-RQ---LTRLTNHF----GIDTEPT  298 (433)
T ss_pred             CCCCC---EEEeccCCCCccCceECCCCCEEEEEEeCC-----CCceEEEEECCC-CC---eEECccCC----CCccceE
Confidence            99998   777876555556899999999999876432     246899999984 54   34454432    3346789


Q ss_pred             ECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927          308 WSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (548)
Q Consensus       308 wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~  386 (548)
                      |+|||+ |+|.+++ .|..+||.+++++++.++++........         ..|+|   |++.|++....++..+|+++
T Consensus       299 ~spDG~~l~f~sd~-~g~~~iy~~dl~~g~~~~lt~~g~~~~~---------~~~Sp---DG~~Ia~~~~~~~~~~I~v~  365 (433)
T PRK04922        299 WAPDGKSIYFTSDR-GGRPQIYRVAASGGSAERLTFQGNYNAR---------ASVSP---DGKKIAMVHGSGGQYRIAVM  365 (433)
T ss_pred             ECCCCCEEEEEECC-CCCceEEEEECCCCCeEEeecCCCCccC---------EEECC---CCCEEEEEECCCCceeEEEE
Confidence            999999 9999988 7778999999988888888742211112         23444   88999887766677899999


Q ss_pred             ECCCCceEeecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          387 DDFGHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       387 dl~~g~~~~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      |+++++.+.|+....... .+++|++.++|.... .....||.++++++.
T Consensus       366 d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~-~g~~~L~~~~~~g~~  414 (433)
T PRK04922        366 DLSTGSVRTLTPGSLDESPSFAPNGSMVLYATRE-GGRGVLAAVSTDGRV  414 (433)
T ss_pred             ECCCCCeEECCCCCCCCCceECCCCCEEEEEEec-CCceEEEEEECCCCc
Confidence            999999888875432222 347899999888765 345689999987655

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=1.9e-17  Score=174.68  Aligned_cols=243  Identities=15%  Similarity=0.142  Sum_probs=170.8

Q ss_pred             CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC--CeEEEEeCCCCC
Q 008927           99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD  176 (548)
Q Consensus        99 g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~--~~Ly~~~~~~~~  176 (548)
                      +.+|+|+..+..+.....|+.++.+| .+.+.|+.....+       ....|+|||+.|+|.+..+  .+||++++.+  
T Consensus       168 ~~ria~v~~~~~~~~~~~i~i~d~dg-~~~~~lt~~~~~v-------~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t--  237 (429)
T PRK01742        168 RTRIAYVVQKNGGSQPYEVRVADYDG-FNQFIVNRSSQPL-------MSPAWSPDGSKLAYVSFENKKSQLVVHDLRS--  237 (429)
T ss_pred             CCEEEEEEEEcCCCceEEEEEECCCC-CCceEeccCCCcc-------ccceEcCCCCEEEEEEecCCCcEEEEEeCCC--
Confidence            77899997665433357888888774 4677777543222       2458999999999987543  4899999987  


Q ss_pred             CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCC
Q 008927          177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE  256 (548)
Q Consensus       177 ~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk  256 (548)
                      ++.++++...    .....+.|||||++|++.....+      ..+||.+|+++++   .++|+.+......|.|||||+
T Consensus       238 g~~~~l~~~~----g~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~  304 (429)
T PRK01742        238 GARKVVASFR----GHNGAPAFSPDGSRLAFASSKDG------VLNIYVMGANGGT---PSQLTSGAGNNTEPSWSPDGQ  304 (429)
T ss_pred             CceEEEecCC----CccCceeECCCCCEEEEEEecCC------cEEEEEEECCCCC---eEeeccCCCCcCCEEECCCCC
Confidence            7777887652    22346899999999999754321      2579999999998   888887665667899999999


Q ss_pred             EEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCC
Q 008927          257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN  335 (548)
Q Consensus       257 ~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g  335 (548)
                      +|+|.+.. .    ...+||.++..+ +.   .+.+..      .. ..+.|+|||+ |++.+.     .+++++|+.++
T Consensus       305 ~i~f~s~~-~----g~~~I~~~~~~~-~~---~~~l~~------~~-~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g  363 (429)
T PRK01742        305 SILFTSDR-S----GSPQVYRMSASG-GG---ASLVGG------RG-YSAQISADGKTLVMING-----DNVVKQDLTSG  363 (429)
T ss_pred             EEEEEECC-C----CCceEEEEECCC-CC---eEEecC------CC-CCccCCCCCCEEEEEcC-----CCEEEEECCCC
Confidence            99998732 2    135899988763 32   233422      12 4578999999 777653     25888999888


Q ss_pred             eeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecC
Q 008927          336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI  398 (548)
Q Consensus       336 ~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~  398 (548)
                      +.+.++.. .+...|.         |.|   +++.|++...+++...+++++.+++..+.|..
T Consensus       364 ~~~~lt~~-~~~~~~~---------~sP---dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~  413 (429)
T PRK01742        364 STEVLSST-FLDESPS---------ISP---NGIMIIYSSTQGLGKVLQLVSADGRFKARLPG  413 (429)
T ss_pred             CeEEecCC-CCCCCce---------ECC---CCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence            87777632 1222233         444   78888888776667777888876666677753

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=2.3e-17  Score=174.06  Aligned_cols=233  Identities=15%  Similarity=0.174  Sum_probs=163.9

Q ss_pred             CCEEEEEeCC-----CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          154 GDTVIFSNYK-----DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       154 ~~~i~F~~~~-----~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +.+|+|+..+     +.+||+.|.+|  ...+.||...    .....+.|||||++|+|++.+.      ...+||++|+
T Consensus       168 ~~ria~v~~~~~~~~~~~i~i~d~dg--~~~~~lt~~~----~~v~~p~wSPDG~~la~~s~~~------~~~~i~i~dl  235 (429)
T PRK01742        168 RTRIAYVVQKNGGSQPYEVRVADYDG--FNQFIVNRSS----QPLMSPAWSPDGSKLAYVSFEN------KKSQLVVHDL  235 (429)
T ss_pred             CCEEEEEEEEcCCCceEEEEEECCCC--CCceEeccCC----CccccceEcCCCCEEEEEEecC------CCcEEEEEeC
Confidence            4589898643     24899999998  6778888752    3467899999999999986432      2368999999


Q ss_pred             CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      .+++   .+++....+....++|||||++|+|.....     ...+||++++++ +.   .+.++...    .....+.|
T Consensus       236 ~tg~---~~~l~~~~g~~~~~~wSPDG~~La~~~~~~-----g~~~Iy~~d~~~-~~---~~~lt~~~----~~~~~~~w  299 (429)
T PRK01742        236 RSGA---RKVVASFRGHNGAPAFSPDGSRLAFASSKD-----GVLNIYVMGANG-GT---PSQLTSGA----GNNTEPSW  299 (429)
T ss_pred             CCCc---eEEEecCCCccCceeECCCCCEEEEEEecC-----CcEEEEEEECCC-CC---eEeeccCC----CCcCCEEE
Confidence            9998   777775555556799999999999876322     135799999873 43   34455543    45678999


Q ss_pred             CcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927          309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (548)
Q Consensus       309 spDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d  387 (548)
                      +|||+ |+|.+++ .|..+||.++..+++.+.+... .  ..+         .|+|   |++.|++...    ..++.+|
T Consensus       300 SpDG~~i~f~s~~-~g~~~I~~~~~~~~~~~~l~~~-~--~~~---------~~Sp---DG~~ia~~~~----~~i~~~D  359 (429)
T PRK01742        300 SPDGQSILFTSDR-SGSPQVYRMSASGGGASLVGGR-G--YSA---------QISA---DGKTLVMING----DNVVKQD  359 (429)
T ss_pred             CCCCCEEEEEECC-CCCceEEEEECCCCCeEEecCC-C--CCc---------cCCC---CCCEEEEEcC----CCEEEEE
Confidence            99999 9999988 7889999999877766655311 1  112         2343   7888877643    3577899


Q ss_pred             CCCCceEeecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          388 DFGHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       388 l~~g~~~~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      +.+|+.+.++....... .+++|++.|++.... .....+++++.++..
T Consensus       360 l~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~-g~~~~l~~~~~~G~~  407 (429)
T PRK01742        360 LTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQ-GLGKVLQLVSADGRF  407 (429)
T ss_pred             CCCCCeEEecCCCCCCCceECCCCCEEEEEEcC-CCceEEEEEECCCCc
Confidence            99998887764432211 347888888877643 333455666765544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.80  E-value=3e-17  Score=173.00  Aligned_cols=250  Identities=15%  Similarity=0.229  Sum_probs=177.3

Q ss_pred             CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC--CeEEEEeCCCCC
Q 008927           99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD  176 (548)
Q Consensus        99 g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~--~~Ly~~~~~~~~  176 (548)
                      +++++|+..+. .+++..|+.++.++ ++.++|+.....+       ....|++||+.|+|....+  .+||++++.+  
T Consensus       155 ~~~~~~~~~~~-~~~~~~l~~~d~~g-~~~~~l~~~~~~~-------~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~--  223 (417)
T TIGR02800       155 STRIAYVSKSG-KSRRYELQVADYDG-ANPQTITRSREPI-------LSPAWSPDGQKLAYVSFESGKPEIYVQDLAT--  223 (417)
T ss_pred             CCEEEEEEEeC-CCCcceEEEEcCCC-CCCEEeecCCCce-------ecccCCCCCCEEEEEEcCCCCcEEEEEECCC--
Confidence            78899997654 35688898887764 4688887543222       2347999999999987544  5899999987  


Q ss_pred             CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCC
Q 008927          177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE  256 (548)
Q Consensus       177 ~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk  256 (548)
                      ++.+.++...    .....+.|+|||+.|+|.....      ...+||.+|+.+++   .+.|+........|.|+|||+
T Consensus       224 g~~~~~~~~~----~~~~~~~~spDg~~l~~~~~~~------~~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~s~dg~  290 (417)
T TIGR02800       224 GQREKVASFP----GMNGAPAFSPDGSKLAVSLSKD------GNPDIYVMDLDGKQ---LTRLTNGPGIDTEPSWSPDGK  290 (417)
T ss_pred             CCEEEeecCC----CCccceEECCCCCEEEEEECCC------CCccEEEEECCCCC---EEECCCCCCCCCCEEECCCCC
Confidence            6667776542    1234578999999998874432      13589999999988   778876554456789999999


Q ss_pred             EEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCC
Q 008927          257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN  335 (548)
Q Consensus       257 ~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g  335 (548)
                      +|+|.+.. .    ...+||++++++ ++   .+.+....    .....+.|+|||+ |++.... .+..+|+.++++++
T Consensus       291 ~l~~~s~~-~----g~~~iy~~d~~~-~~---~~~l~~~~----~~~~~~~~spdg~~i~~~~~~-~~~~~i~~~d~~~~  356 (417)
T TIGR02800       291 SIAFTSDR-G----GSPQIYMMDADG-GE---VRRLTFRG----GYNASPSWSPDGDLIAFVHRE-GGGFNIAVMDLDGG  356 (417)
T ss_pred             EEEEEECC-C----CCceEEEEECCC-CC---EEEeecCC----CCccCeEECCCCCEEEEEEcc-CCceEEEEEeCCCC
Confidence            99988732 2    134899999874 44   23343322    3456789999999 6666554 57789999999888


Q ss_pred             eeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCC
Q 008927          336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP  399 (548)
Q Consensus       336 ~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~  399 (548)
                      ..+.++... ....|.         |.|   +++.|++....++...|++++.+++..+.++.+
T Consensus       357 ~~~~l~~~~-~~~~p~---------~sp---dg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~  407 (417)
T TIGR02800       357 GERVLTDTG-LDESPS---------FAP---NGRMILYATTRGGRGVLGLVSTDGRFRARLPLG  407 (417)
T ss_pred             CeEEccCCC-CCCCce---------ECC---CCCEEEEEEeCCCcEEEEEEECCCceeeECCCC
Confidence            777665321 112222         343   788999998888888899988776666666654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.80  E-value=3.5e-17  Score=172.49  Aligned_cols=240  Identities=17%  Similarity=0.178  Sum_probs=170.9

Q ss_pred             CCEEEEEeCC----CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927          154 GDTVIFSNYK----DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (548)
Q Consensus       154 ~~~i~F~~~~----~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~  229 (548)
                      +.+|+|....    ..+||+++.++  .++++|+...    .....+.|||||++|+|+....      ....|+++|+.
T Consensus       155 ~~~~~~~~~~~~~~~~~l~~~d~~g--~~~~~l~~~~----~~~~~p~~Spdg~~la~~~~~~------~~~~i~v~d~~  222 (417)
T TIGR02800       155 STRIAYVSKSGKSRRYELQVADYDG--ANPQTITRSR----EPILSPAWSPDGQKLAYVSFES------GKPEIYVQDLA  222 (417)
T ss_pred             CCEEEEEEEeCCCCcceEEEEcCCC--CCCEEeecCC----CceecccCCCCCCEEEEEEcCC------CCcEEEEEECC
Confidence            5678888643    23799999987  7788888752    2355778999999999985432      13689999999


Q ss_pred             CCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (548)
Q Consensus       230 ~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws  309 (548)
                      +++   .+.+.........+.|||||++|+|.....     ...+||++++++ +.   .+.++...    .....+.|+
T Consensus       223 ~g~---~~~~~~~~~~~~~~~~spDg~~l~~~~~~~-----~~~~i~~~d~~~-~~---~~~l~~~~----~~~~~~~~s  286 (417)
T TIGR02800       223 TGQ---REKVASFPGMNGAPAFSPDGSKLAVSLSKD-----GNPDIYVMDLDG-KQ---LTRLTNGP----GIDTEPSWS  286 (417)
T ss_pred             CCC---EEEeecCCCCccceEECCCCCEEEEEECCC-----CCccEEEEECCC-CC---EEECCCCC----CCCCCEEEC
Confidence            997   677765555556789999999999875322     246899999974 43   23344332    234578999


Q ss_pred             cCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEEC
Q 008927          310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (548)
Q Consensus       310 pDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl  388 (548)
                      |||+ |+|.+++ .+..+||.+++.+++.++++........         ..|+|   +++.|++.....+..+|+.+|+
T Consensus       287 ~dg~~l~~~s~~-~g~~~iy~~d~~~~~~~~l~~~~~~~~~---------~~~sp---dg~~i~~~~~~~~~~~i~~~d~  353 (417)
T TIGR02800       287 PDGKSIAFTSDR-GGSPQIYMMDADGGEVRRLTFRGGYNAS---------PSWSP---DGDLIAFVHREGGGFNIAVMDL  353 (417)
T ss_pred             CCCCEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCccC---------eEECC---CCCEEEEEEccCCceEEEEEeC
Confidence            9999 8888888 7778999999988888777643221112         23444   7888888877667889999999


Q ss_pred             CCCceEeecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          389 FGHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       389 ~~g~~~~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      .++..+.++....... .+++|++.|++...... ...+++++.++..
T Consensus       354 ~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~-~~~l~~~~~~g~~  400 (417)
T TIGR02800       354 DGGGERVLTDTGLDESPSFAPNGRMILYATTRGG-RGVLGLVSTDGRF  400 (417)
T ss_pred             CCCCeEEccCCCCCCCceECCCCCEEEEEEeCCC-cEEEEEEECCCce
Confidence            9988877765432222 34789999988876543 3577777765443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.77  E-value=5.3e-17  Score=166.89  Aligned_cols=256  Identities=17%  Similarity=0.192  Sum_probs=173.3

Q ss_pred             EECCEEEEEeCC--------CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 008927          152 IFGDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (548)
Q Consensus       152 ~~~~~i~F~~~~--------~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l  223 (548)
                      ||++.|+|..+.        .+.+|++++..  ++.++|+..    ......+.|||||+.|+|++.          ++|
T Consensus         2 ~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~--~~~~~l~~~----~~~~~~~~~sP~g~~~~~v~~----------~nl   65 (353)
T PF00930_consen    2 PDGKFVLFATNYTKQWRHSFKGDYYIYDIET--GEITPLTPP----PPKLQDAKWSPDGKYIAFVRD----------NNL   65 (353)
T ss_dssp             TTSSEEEEEEEEEEESSSEEEEEEEEEETTT--TEEEESS-E----ETTBSEEEE-SSSTEEEEEET----------TEE
T ss_pred             CCCCeEEEEECcEEeeeeccceeEEEEecCC--CceEECcCC----ccccccceeecCCCeeEEEec----------Cce
Confidence            456666664321        24799999987  788888874    234677889999999999952          479


Q ss_pred             EEEECCCCCccCcEEeeecC------------------CceeeeEECCCCCEEEEEEecCCCCC----------------
Q 008927          224 VAIALNGQNIQEPKVLVSGS------------------DFYAFPRMDPRGERMAWIEWHHPNMP----------------  269 (548)
Q Consensus       224 ~~idl~~g~~~~~~~L~~~~------------------~~~~~p~~SPDGk~La~~~~~~~~~p----------------  269 (548)
                      |+.++.++.   .++|+...                  +......|||||++|||+..+....+                
T Consensus        66 y~~~~~~~~---~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~  142 (353)
T PF00930_consen   66 YLRDLATGQ---ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPE  142 (353)
T ss_dssp             EEESSTTSE---EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-E
T ss_pred             EEEECCCCC---eEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCc
Confidence            999999887   78887532                  11245679999999999975533211                


Q ss_pred             ------------CCCceEEEEEecCCCceeeeEEE---cCCCCCcccCCcCceECcCCc-EEEE-EeCCCCeeeEEEEec
Q 008927          270 ------------WDKAELWVGYISENGDVYKRVCV---AGFDPTIVESPTEPKWSSKGE-LFFV-TDRKNGFWNLHKWIE  332 (548)
Q Consensus       270 ------------~~~~~L~v~~~~~~g~~~~~~~l---~~~~~~~~~~~~~~~wspDG~-L~~~-sd~~~g~~~Ly~~d~  332 (548)
                                  ....+|+++++++ ++..+....   ...+    ..+..+.|++|++ +++. .+|......|+.+|+
T Consensus       143 ~~~~~YPk~G~~np~v~l~v~~~~~-~~~~~~~~~~~~~~~~----~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~  217 (353)
T PF00930_consen  143 VESIRYPKAGDPNPRVSLFVVDLAS-GKTTELDPPNSLNPQD----YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDA  217 (353)
T ss_dssp             EEEEE--BTTS---EEEEEEEESSS-TCCCEE---HHHHTSS----EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEE
T ss_pred             ccccccCCCCCcCCceEEEEEECCC-CcEEEeeeccccCCCc----cCcccceecCCCcEEEEEEcccCCCEEEEEEEEC
Confidence                        0113678888874 442211111   1222    4567889999999 7776 677678888999999


Q ss_pred             cCCeeEeecccccccCCCcccccCcceeee-eecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCcee---Eeeee
Q 008927          333 SNNEVLAIYSLDAEFSRPLWVFGINSYEII-QSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDI---DNITL  408 (548)
Q Consensus       333 ~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~-~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~---~~~s~  408 (548)
                      ++++.+.+..+    ....|+.......+. +   +++.+++...++|..|||.++.+++..++|+.+...+   ..++.
T Consensus       218 ~tg~~~~~~~e----~~~~Wv~~~~~~~~~~~---~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~  290 (353)
T PF00930_consen  218 STGETRVVLEE----TSDGWVDVYDPPHFLGP---DGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDE  290 (353)
T ss_dssp             CTTTCEEEEEE----ESSSSSSSSSEEEE-TT---TSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEEC
T ss_pred             CCCceeEEEEe----cCCcceeeecccccccC---CCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcC
Confidence            88877666522    234565333333443 3   7888888888999999999999999999999764444   33467


Q ss_pred             cCCEEEEEEecC-CCCCeEEEEEcC-CCceee
Q 008927          409 GNDCLFVEGASG-VEPSSVAKVTLD-DHKLKA  438 (548)
Q Consensus       409 d~~~l~~~~ss~-~~p~~l~~~d~~-~~~~~~  438 (548)
                      +++.|||+++.. ....+||+++++ +++.++
T Consensus       291 ~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~  322 (353)
T PF00930_consen  291 DNNRIYFTANGDNPGERHLYRVSLDSGGEPKC  322 (353)
T ss_dssp             TSSEEEEEESSGGTTSBEEEEEETTETTEEEE
T ss_pred             CCCEEEEEecCCCCCceEEEEEEeCCCCCeEe
Confidence            889999999763 345799999998 777543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=99.75  E-value=1.4e-16  Score=165.17  Aligned_cols=228  Identities=15%  Similarity=0.202  Sum_probs=167.9

Q ss_pred             CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC
Q 008927          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD  244 (548)
Q Consensus       165 ~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~  244 (548)
                      .+|++.|-+|  ...+.++..    ......+.|+||++.|+|+.-...     ...++|.+++++++   ..++.....
T Consensus       173 ~~l~~~D~dg--~~~~~l~~~----~~~~~~p~ws~~~~~~~y~~f~~~-----~~~~i~~~~l~~g~---~~~i~~~~g  238 (425)
T COG0823         173 YELALGDYDG--YNQQKLTDS----GSLILTPAWSPDGKKLAYVSFELG-----GCPRIYYLDLNTGK---RPVILNFNG  238 (425)
T ss_pred             ceEEEEccCC--cceeEeccc----CcceeccccCcCCCceEEEEEecC-----CCceEEEEeccCCc---cceeeccCC
Confidence            5899999886  667778775    234567899999999999854432     12689999999998   666665555


Q ss_pred             ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCC
Q 008927          245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG  323 (548)
Q Consensus       245 ~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g  323 (548)
                      ....|+|||||++|+|...+.     ...+||++|+.. +.   ...++...    .....|.|+|||+ |+|.+|+ .|
T Consensus       239 ~~~~P~fspDG~~l~f~~~rd-----g~~~iy~~dl~~-~~---~~~Lt~~~----gi~~~Ps~spdG~~ivf~Sdr-~G  304 (425)
T COG0823         239 NNGAPAFSPDGSKLAFSSSRD-----GSPDIYLMDLDG-KN---LPRLTNGF----GINTSPSWSPDGSKIVFTSDR-GG  304 (425)
T ss_pred             ccCCccCCCCCCEEEEEECCC-----CCccEEEEcCCC-Cc---ceecccCC----ccccCccCCCCCCEEEEEeCC-CC
Confidence            567899999999999987332     367899999984 43   23355543    3345899999999 9999999 99


Q ss_pred             eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCc-eEeecCCCce
Q 008927          324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTD  402 (548)
Q Consensus       324 ~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~-~~~l~~~~~~  402 (548)
                      ..+||++++++++.++++........|.|.         |   |+++|++....+|...+...|+.++. ++.++.....
T Consensus       305 ~p~I~~~~~~g~~~~riT~~~~~~~~p~~S---------p---dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~  372 (425)
T COG0823         305 RPQIYLYDLEGSQVTRLTFSGGGNSNPVWS---------P---DGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLN  372 (425)
T ss_pred             CcceEEECCCCCceeEeeccCCCCcCccCC---------C---CCCEEEEEeccCCceeeEEeccCCCCcEEEccccccC
Confidence            999999999999999998643322345443         3   88999888755677888999988776 7777755433


Q ss_pred             -eEeeeecCCEEEEEEecCCCCCeEEEEEcCC
Q 008927          403 -IDNITLGNDCLFVEGASGVEPSSVAKVTLDD  433 (548)
Q Consensus       403 -~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~  433 (548)
                       -..++++++.++|..... ....++.++..+
T Consensus       373 e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~~g  403 (425)
T COG0823         373 ESPSWAPNGRMIMFSSGQG-GGSVLSLVSLDG  403 (425)
T ss_pred             CCCCcCCCCceEEEeccCC-CCceEEEeeccc
Confidence             223467888888877665 455666666543

>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=5.6e-16  Score=158.95  Aligned_cols=173  Identities=18%  Similarity=0.186  Sum_probs=125.1

Q ss_pred             CCEEEEEEEeCC--eEEEEEEECC-CCceEeecCCC-ceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCceeeeee--
Q 008927          368 KNLIACSYRQNG--RSYLGILDDF-GHSLSLLDIPF-TDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDF--  441 (548)
Q Consensus       368 ~~~l~~~~~~~g--~~~L~~~dl~-~g~~~~l~~~~-~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~--  441 (548)
                      .+.+||..++++  ..+||++..+ .|++.+|+.+. ..-..++.+=+.++...++-..|+.+..+.+..++-..+.+  
T Consensus       515 ~~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~~g~sh~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~~l~~q~  594 (867)
T KOG2281|consen  515 RKLVYFVGTKDTPLEHHLYVVSYENPGEIARLTEPGYSHSCELDQQCDHFVSYYSSVGSPPCVSLYSLSWPENDPLPKQV  594 (867)
T ss_pred             ceEEEEEccCCCCceeeEEEEEEecCCceeeccCCCcccchhhhhhhhhHhhhhhcCCCCceEEEEeccCCccCcccchh
Confidence            456777777764  6799999998 88999998753 32223333223355556667778887777766654322110  


Q ss_pred             --EEEecCCCCCCccCCCccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccccc-CccC----
Q 008927          442 --KVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILN----  514 (548)
Q Consensus       442 --~~~l~~~~~~~l~~~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~-~~~~----  514 (548)
                        ...|.+   ....+-++..||.|.|.++ -|.+++|.+|+|.|  |++  ++|||++++|||||..+-. +.|.    
T Consensus       595 ~~~~~l~~---~~~~~Pdy~p~eif~fqs~-tg~~lYgmiyKPhn--~~p--gkkYptvl~VYGGP~VQlVnnsfkgi~y  666 (867)
T KOG2281|consen  595 SFWAILVS---GAPPPPDYVPPEIFSFQSK-TGLTLYGMIYKPHN--FQP--GKKYPTVLNVYGGPGVQLVNNSFKGIQY  666 (867)
T ss_pred             hHHHHHHh---cCCCCCccCChhheeeecC-CCcEEEEEEEcccc--CCC--CCCCceEEEEcCCCceEEeeccccceeh
Confidence              000111   1123345667799999997 89999999999987  764  8999999999999999864 4554    


Q ss_pred             hHHHHHHhcCcEEEEeCCCCCCCCChhhhhcccC
Q 008927          515 LSIQYWTSRGWAFVDVNYGGSTGLSSVPSTSIFV  548 (548)
Q Consensus       515 ~~~Q~~asrGyaVl~~NyRGStGyG~~f~~ai~~  548 (548)
                      ..+++||++||+|+.+|.|||--+|.+|..+|.+
T Consensus       667 lR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~  700 (867)
T KOG2281|consen  667 LRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKK  700 (867)
T ss_pred             hhhhhhhhcceEEEEEcCCCccccchhhHHHHhh
Confidence            5678999999999999999999999999988753

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.73  E-value=1.3e-15  Score=156.54  Aligned_cols=295  Identities=15%  Similarity=0.146  Sum_probs=185.2

Q ss_pred             cC-CCcEEEEEecC---CCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEEEEeC
Q 008927           97 DG-HGRLIWLESRP---TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSI  172 (548)
Q Consensus        97 sp-g~~i~~~~~~~---~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~~~~  172 (548)
                      || ++.+++.....   .......++..+... ++.++|+.....+       ....|+|+|+.|+|+.  +++||..++
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~-~~~~~l~~~~~~~-------~~~~~sP~g~~~~~v~--~~nly~~~~   70 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET-GEITPLTPPPPKL-------QDAKWSPDGKYIAFVR--DNNLYLRDL   70 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT-TEEEESS-EETTB-------SEEEE-SSSTEEEEEE--TTEEEEESS
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCC-CceEECcCCcccc-------ccceeecCCCeeEEEe--cCceEEEEC
Confidence            46 66666643211   112234556665542 4667776541111       1247999999999998  678999999


Q ss_pred             CCCCCCceecCCCCCCC--------------CceecceeeCCCCCEEEEEEeccCC------------------------
Q 008927          173 DSKDSSPLPITPDYGEP--------------LVSYADGIFDPRFNRYVTVREDRRQ------------------------  214 (548)
Q Consensus       173 ~~~~~~~~~lT~~~~~~--------------~~~~~~~~~SpDG~~i~~v~~~~~~------------------------  214 (548)
                      .+  ++.++||...+..              -.+...+.|||||++|+|.+-+...                        
T Consensus        71 ~~--~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~Y  148 (353)
T PF00930_consen   71 AT--GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRY  148 (353)
T ss_dssp             TT--SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE-
T ss_pred             CC--CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccccccc
Confidence            87  7889999863100              0123457799999999998755321                        


Q ss_pred             ---CCCCceeEEEEEECCCCCccCcEEeee-----cCC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc
Q 008927          215 ---DALNSTTEIVAIALNGQNIQEPKVLVS-----GSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD  285 (548)
Q Consensus       215 ---~~~~~~~~l~~idl~~g~~~~~~~L~~-----~~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~  285 (548)
                         +..+....|+++|+++++   ...+.-     ..+ ......|++|+++|++...++..   ....|+++|... |.
T Consensus       149 Pk~G~~np~v~l~v~~~~~~~---~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q---~~~~l~~~d~~t-g~  221 (353)
T PF00930_consen  149 PKAGDPNPRVSLFVVDLASGK---TTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQ---NRLDLVLCDAST-GE  221 (353)
T ss_dssp             -BTTS---EEEEEEEESSSTC---CCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTS---TEEEEEEEEECT-TT
T ss_pred             CCCCCcCCceEEEEEECCCCc---EEEeeeccccCCCccCcccceecCCCcEEEEEEcccCC---CEEEEEEEECCC-Cc
Confidence               112367789999999997   434321     122 35678899999977765544432   356788888874 44


Q ss_pred             eeeeEEEcCCCCCcccCCcCceEC-cCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeee
Q 008927          286 VYKRVCVAGFDPTIVESPTEPKWS-SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQ  363 (548)
Q Consensus       286 ~~~~~~l~~~~~~~~~~~~~~~ws-pDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~  363 (548)
                      .+. ......+ ........+.|. +||. +++++++ +|+.+||+++.+++..+.||..+.++..        ...+. 
T Consensus       222 ~~~-~~~e~~~-~Wv~~~~~~~~~~~~~~~~l~~s~~-~G~~hly~~~~~~~~~~~lT~G~~~V~~--------i~~~d-  289 (353)
T PF00930_consen  222 TRV-VLEETSD-GWVDVYDPPHFLGPDGNEFLWISER-DGYRHLYLYDLDGGKPRQLTSGDWEVTS--------ILGWD-  289 (353)
T ss_dssp             CEE-EEEEESS-SSSSSSSEEEE-TTTSSEEEEEEET-TSSEEEEEEETTSSEEEESS-SSS-EEE--------EEEEE-
T ss_pred             eeE-EEEecCC-cceeeecccccccCCCCEEEEEEEc-CCCcEEEEEcccccceeccccCceeecc--------cceEc-
Confidence            211 1111111 111122345555 8888 8889887 9999999999999998999865433321        12233 


Q ss_pred             ecCCCCEEEEEEEe--CCeEEEEEEECC-CCceEeecCCCc-e-eEeeeecCCEEEEEEecCCCCC
Q 008927          364 SHGEKNLIACSYRQ--NGRSYLGILDDF-GHSLSLLDIPFT-D-IDNITLGNDCLFVEGASGVEPS  424 (548)
Q Consensus       364 ~~~d~~~l~~~~~~--~g~~~L~~~dl~-~g~~~~l~~~~~-~-~~~~s~d~~~l~~~~ss~~~p~  424 (548)
                        ++++.|||++..  ....+||+++++ +++++.|+.... . -..++++++.++...++++.|+
T Consensus       290 --~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~~~P~  353 (353)
T PF00930_consen  290 --EDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSGPDTPP  353 (353)
T ss_dssp             --CTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEESSSSCE
T ss_pred             --CCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcCCCCCC
Confidence              277899999885  368899999999 899999996533 3 2345899999999999887763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=99.71  E-value=1.2e-15  Score=158.24  Aligned_cols=241  Identities=15%  Similarity=0.242  Sum_probs=163.9

Q ss_pred             cEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC---CeEEEEeCCCCCC
Q 008927          101 RLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD---QRLYKHSIDSKDS  177 (548)
Q Consensus       101 ~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~---~~Ly~~~~~~~~~  177 (548)
                      ++.++...........|+..+-+| ...+.++.....+.       ...|++++..|+|.....   .++|+++++.  +
T Consensus       159 ~i~~v~~~~~~~~~~~l~~~D~dg-~~~~~l~~~~~~~~-------~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~--g  228 (425)
T COG0823         159 RIAYVAESDGGPLPYELALGDYDG-YNQQKLTDSGSLIL-------TPAWSPDGKKLAYVSFELGGCPRIYYLDLNT--G  228 (425)
T ss_pred             eEEEEeecccCCCCceEEEEccCC-cceeEecccCccee-------ccccCcCCCceEEEEEecCCCceEEEEeccC--C
Confidence            444543222223456777776653 46677776543332       247999999888875432   4799999997  5


Q ss_pred             CceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCE
Q 008927          178 SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGER  257 (548)
Q Consensus       178 ~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~  257 (548)
                      ....+...    ......|.|||||++|+|+..+.      ...+||++|+.+++   .++|+.+......|.|||||++
T Consensus       229 ~~~~i~~~----~g~~~~P~fspDG~~l~f~~~rd------g~~~iy~~dl~~~~---~~~Lt~~~gi~~~Ps~spdG~~  295 (425)
T COG0823         229 KRPVILNF----NGNNGAPAFSPDGSKLAFSSSRD------GSPDIYLMDLDGKN---LPRLTNGFGINTSPSWSPDGSK  295 (425)
T ss_pred             ccceeecc----CCccCCccCCCCCCEEEEEECCC------CCccEEEEcCCCCc---ceecccCCccccCccCCCCCCE
Confidence            55444443    23456789999999999985543      24689999999998   7889988777779999999999


Q ss_pred             EEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCe
Q 008927          258 MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE  336 (548)
Q Consensus       258 La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~  336 (548)
                      |+|++ +..+    ..+||++++++ +.   .+.++...    .....|.|||||+ |+|.+-. .|.+++...++.++.
T Consensus       296 ivf~S-dr~G----~p~I~~~~~~g-~~---~~riT~~~----~~~~~p~~SpdG~~i~~~~~~-~g~~~i~~~~~~~~~  361 (425)
T COG0823         296 IVFTS-DRGG----RPQIYLYDLEG-SQ---VTRLTFSG----GGNSNPVWSPDGDKIVFESSS-GGQWDIDKNDLASGG  361 (425)
T ss_pred             EEEEe-CCCC----CcceEEECCCC-Cc---eeEeeccC----CCCcCccCCCCCCEEEEEecc-CCceeeEEeccCCCC
Confidence            99997 3332    45899999984 33   23333322    2344899999999 8887733 566899999987776


Q ss_pred             -eEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCC
Q 008927          337 -VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH  391 (548)
Q Consensus       337 -~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g  391 (548)
                       ++.++.. .-...|.|..            +++.|++.....+...|+.++..+.
T Consensus       362 ~~~~lt~~-~~~e~ps~~~------------ng~~i~~~s~~~~~~~l~~~s~~g~  404 (425)
T COG0823         362 KIRILTST-YLNESPSWAP------------NGRMIMFSSGQGGGSVLSLVSLDGR  404 (425)
T ss_pred             cEEEcccc-ccCCCCCcCC------------CCceEEEeccCCCCceEEEeeccce
Confidence             5555532 1223344432            6777777776667778887776443

>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1.1e-14  Score=161.49  Aligned_cols=221  Identities=19%  Similarity=0.191  Sum_probs=135.8

Q ss_pred             ceECcCCc--EEEEEeCCCCeeeEEEEeccCC-eeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEe--CCe
Q 008927          306 PKWSSKGE--LFFVTDRKNGFWNLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ--NGR  380 (548)
Q Consensus       306 ~~wspDG~--L~~~sd~~~g~~~Ly~~d~~~g-~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~--~g~  380 (548)
                      +.++.|+.  +++......++.++..+....+ +.+.++.       +.|... .-+.+.   .+.+.++|.+..  -+.
T Consensus       345 ~~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~~~~~lt~-------g~w~v~-~i~~~~---~~~~~i~f~~~~~~~~~  413 (755)
T KOG2100|consen  345 PVFSSDGSSYLKVDSVSDGGYNHIAYLKLSNGSEPRMLTS-------GNWEVT-SILGYD---KDSNRIYFDAYEEDPSE  413 (755)
T ss_pred             ceEeecCCceeEEEeeccCCEEEEEEEEcCCCCccccccc-------cceEEE-Eecccc---CCCceEEEEecCCCCCc
Confidence            66777764  4444544233667766666555 4444443       344321 001111   167889988876  478


Q ss_pred             EEEEEEECCCCceEeecCCCc----eeEee--eecCCEEEEEEecCCCCCeEE-EEEcCCCceeeeeeEEEecCCC--CC
Q 008927          381 SYLGILDDFGHSLSLLDIPFT----DIDNI--TLGNDCLFVEGASGVEPSSVA-KVTLDDHKLKAVDFKVVWSSSP--DT  451 (548)
Q Consensus       381 ~~L~~~dl~~g~~~~l~~~~~----~~~~~--s~d~~~l~~~~ss~~~p~~l~-~~d~~~~~~~~~~~~~~l~~~~--~~  451 (548)
                      .+||.+++.++..++++....    .+..+  +...+.++.....+..|...+ +...  .....   ..+|....  ..
T Consensus       414 ~~ly~i~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~--~~~~~---~~~Le~n~~~~~  488 (755)
T KOG2100|consen  414 RHLYSISLGSGTVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDGQLTRHSS--KNSKT---IVVLETNEELKK  488 (755)
T ss_pred             eEEEEEEccccccccccccCCCCcceEEEEecCCcccEEEEEccCCCCCcceeecccc--ccceE---EEEeccChhhHH
Confidence            899999999888777764322    22223  233455555555555443211 1111  11110   12232210  01


Q ss_pred             CccCCCccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCc---cChHHHHHHhcCcEEE
Q 008927          452 LKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---LNLSIQYWTSRGWAFV  528 (548)
Q Consensus       452 ~l~~~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~---~~~~~Q~~asrGyaVl  528 (548)
                      .+....+...+..+.+-  ||..++..++.|.+  |+  ++++|||||.+||||.++...+   .++..+++.++|++|+
T Consensus       489 ~~~~~~~p~~~~~~i~~--~~~~~~~~~~lP~~--~~--~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~  562 (755)
T KOG2100|consen  489 TIENVALPIVEFGKIEI--DGITANAILILPPN--FD--PSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVL  562 (755)
T ss_pred             HhhcccCCcceeEEEEe--ccEEEEEEEecCCC--CC--CCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEE
Confidence            12223444555555554  78899999999965  65  4789999999999998654332   3577788999999999


Q ss_pred             EeCCCCCCCCChhhhhcccC
Q 008927          529 DVNYGGSTGLSSVPSTSIFV  548 (548)
Q Consensus       529 ~~NyRGStGyG~~f~~ai~~  548 (548)
                      .+|+|||+|||.+|+.+++|
T Consensus       563 ~vd~RGs~~~G~~~~~~~~~  582 (755)
T KOG2100|consen  563 QVDGRGSGGYGWDFRSALPR  582 (755)
T ss_pred             EEcCCCcCCcchhHHHHhhh
Confidence            99999999999999999875

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=99.64  E-value=1.9e-12  Score=135.19  Aligned_cols=390  Identities=10%  Similarity=0.039  Sum_probs=246.1

Q ss_pred             CCcEEEEEecCCCCCceEEEEc-CCCCCCC-CcccCCCCCCccccce---eeCCeeeEEECCEEEEEeCCCC----eEEE
Q 008927           99 HGRLIWLESRPTEAGRGVLVKE-PAKAGDE-PSDITPKEYAVRTTAQ---EYGGGAFRIFGDTVIFSNYKDQ----RLYK  169 (548)
Q Consensus        99 g~~i~~~~~~~~e~gr~~l~~~-~~~~~~~-~~~lt~~~~~~r~~v~---~ygg~~~~~~~~~i~F~~~~~~----~Ly~  169 (548)
                      |..-||.+..+  .....++.. ...+ +. .+.|+..  |.+..-+   ..|+-+.++|+..|+|+-+..+    .|-.
T Consensus        85 ~~~~Yy~r~~~--g~~y~~~~R~~~~g-~~~eevlLD~--n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~  159 (682)
T COG1770          85 GPYEYYSRTEE--GKEYPIYCRQPDEG-GEGEEVLLDV--NKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRF  159 (682)
T ss_pred             CCeeEEEEecC--CCcceeEEeccCCC-CCceeEeecc--hhccCcccceeeeeeeeCCCCceEEEEEecccccEEEEEE
Confidence            66666766432  234455444 2332 23 3444432  1111111   2244456677788998865432    4666


Q ss_pred             EeCCCCCCCc--eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCC--CCccCcEEeeecCC-
Q 008927          170 HSIDSKDSSP--LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG--QNIQEPKVLVSGSD-  244 (548)
Q Consensus       170 ~~~~~~~~~~--~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~--g~~~~~~~L~~~~~-  244 (548)
                      .++.+  ++.  ..|+.       ....+.|.+|++.++|++.+..    .+...||.-.+.+  ..   -++|.+..+ 
T Consensus       160 kdL~t--g~~~~d~i~~-------~~~~~~Wa~d~~~lfYt~~d~~----~rp~kv~~h~~gt~~~~---d~lvyeE~d~  223 (682)
T COG1770         160 KDLAT--GEELPDEITN-------TSGSFAWAADGKTLFYTRLDEN----HRPDKVWRHRLGTPGSS---DELVYEEKDD  223 (682)
T ss_pred             Eeccc--ccccchhhcc-------cccceEEecCCCeEEEEEEcCC----CCcceEEEEecCCCCCc---ceEEEEcCCC
Confidence            67765  332  23322       2456789999999999876542    1345788888877  44   567776544 


Q ss_pred             -ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCC
Q 008927          245 -FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN  322 (548)
Q Consensus       245 -~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~  322 (548)
                       |+....-|...++|+....++     ..+++++++.+..+.  +..++.....+    + ...-..-|+ +|+.++. .
T Consensus       224 ~f~~~v~~s~s~~yi~i~~~~~-----~tsE~~ll~a~~p~~--~p~vv~pr~~g----~-eY~~eh~~d~f~i~sN~-~  290 (682)
T COG1770         224 RFFLSVGRSRSEAYIVISLGSH-----ITSEVRLLDADDPEA--EPKVVLPRENG----V-EYSVEHGGDRFYILSNA-D  290 (682)
T ss_pred             cEEEEeeeccCCceEEEEcCCC-----cceeEEEEecCCCCC--ceEEEEEcCCC----c-EEeeeecCcEEEEEecC-C
Confidence             445555566777776443233     367999999885432  23333332101    1 111122266 6667777 4


Q ss_pred             C-eeeEEEEeccC--CeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCC
Q 008927          323 G-FWNLHKWIESN--NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP  399 (548)
Q Consensus       323 g-~~~Ly~~d~~~--g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~  399 (548)
                      | ...|++.....  ...+.+.+.+.+...       ..+..     -.+.|++....++..+|++.+..+++...|..+
T Consensus       291 gknf~l~~ap~~~~~~~w~~~I~h~~~~~l-------~~~~~-----f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~  358 (682)
T COG1770         291 GKNFKLVRAPVSADKSNWRELIPHREDVRL-------EGVDL-----FADHLVLLERQEGLPRVVVRDRKTGEERGIAFD  358 (682)
T ss_pred             CcceEEEEccCCCChhcCeeeeccCCCcee-------eeeee-----eccEEEEEecccCCceEEEEecCCCceeeEEec
Confidence            5 67788776511  123444432211111       01222     256788888888999999999988888777643


Q ss_pred             Ccee-E--ee--eecCCEEEEEEecCCCCCeEEEEEcCCCceeeeeeEEEecCCCCCC-ccCCCccCCeEEEeeccCCCe
Q 008927          400 FTDI-D--NI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTL-KYKSYFSLPELIEFPTEVPGQ  473 (548)
Q Consensus       400 ~~~~-~--~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~pe~i~~~s~~dG~  473 (548)
                      ...+ .  ..  ..+...|.+..++-++|..++-+|+.+++.+      +|.+..-+. +++... ..+.|+.++. ||.
T Consensus       359 ~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~------~LkqqeV~~g~dp~~Y-~s~riwa~a~-dgv  430 (682)
T COG1770         359 DEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERT------LLKQQEVPGGFDPEDY-VSRRIWATAD-DGV  430 (682)
T ss_pred             chhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCcEE------EEEeccCCCCCChhHe-EEEEEEEEcC-CCc
Confidence            2111 1  11  3467789999999999999999999999853      333322222 444433 3578899987 999


Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCChhhhhcc
Q 008927          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSVPSTSI  546 (548)
Q Consensus       474 ~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~~f~~ai  546 (548)
                      .|+--|++-++  +.  -..+.|+||+.||--.....+.|+...--|..|||+...+..||+.--|++|.++.
T Consensus       431 ~VPVSLvyrkd--~~--~~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~G  499 (682)
T COG1770         431 QVPVSLVYRKD--TK--LDGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDG  499 (682)
T ss_pred             EeeEEEEEecc--cC--CCCCCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhh
Confidence            99998887754  32  24567999999999999999999988888999999999999999999999998764

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=99.58  E-value=1e-12  Score=131.25  Aligned_cols=303  Identities=12%  Similarity=0.165  Sum_probs=166.3

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L  167 (548)
                      -.+.+..+.+ |+++.|...+   +|+.+|+.++..+ ++.+|||..+-.      ...|+.++++++.|+|... ..+|
T Consensus        36 ~YF~~~~ft~dG~kllF~s~~---dg~~nly~lDL~t-~~i~QLTdg~g~------~~~g~~~s~~~~~~~Yv~~-~~~l  104 (386)
T PF14583_consen   36 LYFYQNCFTDDGRKLLFASDF---DGNRNLYLLDLAT-GEITQLTDGPGD------NTFGGFLSPDDRALYYVKN-GRSL  104 (386)
T ss_dssp             --TTS--B-TTS-EEEEEE-T---TSS-EEEEEETTT--EEEE---SS-B-------TTT-EE-TTSSEEEEEET-TTEE
T ss_pred             eeecCCCcCCCCCEEEEEecc---CCCcceEEEEccc-CEEEECccCCCC------CccceEEecCCCeEEEEEC-CCeE
Confidence            3466778888 8899997765   5899999998875 689999974311      1135678888888888762 2489


Q ss_pred             EEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCC---C----------CCceeEEEEEECCCCCcc
Q 008927          168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD---A----------LNSTTEIVAIALNGQNIQ  234 (548)
Q Consensus       168 y~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~---~----------~~~~~~l~~idl~~g~~~  234 (548)
                      +++++++  .+.+.|-..++ .-..+...+...|+..++.+...+.+.   .          ....+.|+.||+.+|+  
T Consensus       105 ~~vdL~T--~e~~~vy~~p~-~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--  179 (386)
T PF14583_consen  105 RRVDLDT--LEERVVYEVPD-DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--  179 (386)
T ss_dssp             EEEETTT----EEEEEE--T-TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----
T ss_pred             EEEECCc--CcEEEEEECCc-ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--
Confidence            9999998  67776655421 112244444566888888775433211   0          2356899999999999  


Q ss_pred             CcEEeeecCCceeeeEECC-CCCEEEEEEecCCCCCCCC--ceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcC
Q 008927          235 EPKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDK--AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK  311 (548)
Q Consensus       235 ~~~~L~~~~~~~~~p~~SP-DGk~La~~~~~~~~~p~~~--~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspD  311 (548)
                       .+.|.+...+...+.+|| |...|+|.- .   -||+.  .+||+++.++++    .+.+....+.  +++..-.|+||
T Consensus       180 -~~~v~~~~~wlgH~~fsP~dp~li~fCH-E---Gpw~~Vd~RiW~i~~dg~~----~~~v~~~~~~--e~~gHEfw~~D  248 (386)
T PF14583_consen  180 -RKVVFEDTDWLGHVQFSPTDPTLIMFCH-E---GPWDLVDQRIWTINTDGSN----VKKVHRRMEG--ESVGHEFWVPD  248 (386)
T ss_dssp             -EEEEEEESS-EEEEEEETTEEEEEEEEE-----S-TTTSS-SEEEEETTS-------EESS---TT--EEEEEEEE-TT
T ss_pred             -eeEEEecCccccCcccCCCCCCEEEEec-c---CCcceeceEEEEEEcCCCc----ceeeecCCCC--cccccccccCC
Confidence             899988888888999999 566777764 2   36764  489999977422    2333222212  67778889999


Q ss_pred             Cc-EEEEEe-CCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEe------------
Q 008927          312 GE-LFFVTD-RKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ------------  377 (548)
Q Consensus       312 G~-L~~~sd-~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~------------  377 (548)
                      |+ |+|.+- ++.....|+.+++++++.+.+...+       |.   +.|..++   |++.++--...            
T Consensus       249 G~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-------~~---~H~~ss~---Dg~L~vGDG~d~p~~v~~~~~~~  315 (386)
T PF14583_consen  249 GSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-------WC---SHFMSSP---DGKLFVGDGGDAPVDVADAGGYK  315 (386)
T ss_dssp             SS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--------SE---EEEEE-T---TSSEEEEEE--------------
T ss_pred             CCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-------ce---eeeEEcC---CCCEEEecCCCCCccccccccce
Confidence            99 888754 3222456999999998877665321       11   0122221   33322211110            


Q ss_pred             -CCeEEEEEEECCCCceEeecCC---C---------ce-eEeeeecCCEEEEEEecCCCCCeEEEEEcC
Q 008927          378 -NGRSYLGILDDFGHSLSLLDIP---F---------TD-IDNITLGNDCLFVEGASGVEPSSVAKVTLD  432 (548)
Q Consensus       378 -~g~~~L~~~dl~~g~~~~l~~~---~---------~~-~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~  432 (548)
                       .+..-||+++++.+....|...   +         .. --.+++|++.++|.+.- ..++.||.+++.
T Consensus       316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~i~  383 (386)
T PF14583_consen  316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM-EGPPAVYLVEIP  383 (386)
T ss_dssp             -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-T-TSS-EEEEEE--
T ss_pred             ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCC-CCCccEEEEeCc
Confidence             1234688889888876655421   1         01 12358999999888654 667899998864

>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=6.5e-11  Score=122.89  Aligned_cols=322  Identities=14%  Similarity=0.118  Sum_probs=192.0

Q ss_pred             ecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC---ceeeeEECCCCCEEEEEEecCCCC
Q 008927          193 YADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD---FYAFPRMDPRGERMAWIEWHHPNM  268 (548)
Q Consensus       193 ~~~~~~Sp-DG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~---~~~~p~~SPDGk~La~~~~~~~~~  268 (548)
                      +...+|.- ||+.|.|..++..    ++...||.-.+.+.+.. -.++.+..+   +......+.+|+.+ +.+......
T Consensus       184 ~~y~~w~~~dg~~l~~~t~~~~----~r~hkvy~h~~Gtdq~~-Dvl~~~e~d~~~~vf~~~~kD~~~~~-i~si~~t~s  257 (712)
T KOG2237|consen  184 VSYLAWAKQDGEDLLYGTEDEN----NRPHKVYYHTLGTDQSE-DVLLYEEKDEPKHVFISETKDSGFYT-INSISETCS  257 (712)
T ss_pred             eEeeeecccCCceeeeeeeccc----cCcceEEEEecccCCCc-ceEEEecCCCCeEEEEEEEecCceEE-EEEeeccCC
Confidence            44455666 8887777766542    24568898888775311 233433332   23333455555543 344333221


Q ss_pred             CCCCceEEEEEecCCCceeeeEE-EcCCCC--CcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCe---eEeec
Q 008927          269 PWDKAELWVGYISENGDVYKRVC-VAGFDP--TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE---VLAIY  341 (548)
Q Consensus       269 p~~~~~L~v~~~~~~g~~~~~~~-l~~~~~--~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~---~~~l~  341 (548)
                      |  ...+|..|+...-.  .... +...-.  +....-.. ....++. ++|.++.......+.+.++...+   .+.+.
T Consensus       258 ~--~~~vf~~d~~~~~~--gl~~~~~~~v~~v~~f~eh~~-fi~~~~t~~~~~tn~~~p~y~l~r~~~~~~~~~~W~~v~  332 (712)
T KOG2237|consen  258 P--VNKVFLCDLSSPSD--GLELLILPRVKGVDCFVEHYD-FITNEGTEFYFLTNKDAPNYYLLRIDVKEPEESKWETVF  332 (712)
T ss_pred             c--cceEEEEecccccC--Ccchheeeccchhhhhhhhhh-heeccCcceeeeccCCCCceeEEeeeccCccccccceee
Confidence            1  34789888763111  0110 111000  00001111 2345566 88888775556667777764432   22232


Q ss_pred             ccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEEC-CCCceEeecCCCceeEee--eecCCEEEEEEe
Q 008927          342 SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD-FGHSLSLLDIPFTDIDNI--TLGNDCLFVEGA  418 (548)
Q Consensus       342 ~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl-~~g~~~~l~~~~~~~~~~--s~d~~~l~~~~s  418 (548)
                      .+..+. ...|.      .+.    +++.+++....+-...+...++ ++..++.+..|-+.+..+  ..+...+.|..+
T Consensus       333 ~e~~~~-vl~~~------~~~----~~~~ll~~~~~~l~~i~q~~~~l~g~~~~~fpLpv~sv~~~~g~~~~~~~~f~~s  401 (712)
T KOG2237|consen  333 AEHEKD-VLEDV------DMV----NDNLLLVCYMSDLKHILQVRDLLDGSLLRSFPLPVGSVSGTSGDFKSSTIRFQFS  401 (712)
T ss_pred             cccchh-hhhhh------hhh----cCceEEEEEecCchhhccccccccCceeeeecCCCCcccccccCCCCceEEEEEe
Confidence            221111 11222      121    4556666665544333333333 344567777765555444  345678999999


Q ss_pred             cCCCCCeEEEEEcCCCceeeeeeEEEecC--CCCCCccCCCccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCc
Q 008927          419 SGVEPSSVAKVTLDDHKLKAVDFKVVWSS--SPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPP  496 (548)
Q Consensus       419 s~~~p~~l~~~d~~~~~~~~~~~~~~l~~--~~~~~l~~~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~P  496 (548)
                      +.-.|+.||.+|+..++.+    ..++..  .+.+.++.... ..+.+.++|. ||..|+..+++-+...    ...+.|
T Consensus       402 S~l~P~~iy~yDl~~~~~e----~~vf~e~~~~lpg~~~s~y-~~~r~~~~Sk-DGt~VPM~Iv~kk~~k----~dg~~P  471 (712)
T KOG2237|consen  402 SFLTPGSIYDYDLANGKPE----PSVFREITVVLPGFDASDY-VVERIEVSSK-DGTKVPMFIVYKKDIK----LDGSKP  471 (712)
T ss_pred             ccCCCCeEEEeeccCCCCC----CcceeeeccccCcccccce-EEEEEEEecC-CCCccceEEEEechhh----hcCCCc
Confidence            9999999999999888532    112211  11244444333 5688999998 9999999999854321    234679


Q ss_pred             EEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCChhhhhcc
Q 008927          497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSVPSTSI  546 (548)
Q Consensus       497 liv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~~f~~ai  546 (548)
                      ++|+.|||-.-...+.|..+.-.|..||++.+.+|.||+.+||++|++..
T Consensus       472 ~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G  521 (712)
T KOG2237|consen  472 LLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDG  521 (712)
T ss_pred             eEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhcc
Confidence            99999999998889999998888999999999999999999999999764

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.46  E-value=5.4e-11  Score=125.33  Aligned_cols=316  Identities=14%  Similarity=0.139  Sum_probs=181.5

Q ss_pred             CceEEcCCCcEEEEEecCCCCCceEEEEcCCCC-CCCC-cccCC-CCCCccccceeeCCeeeEEECCEEEEEeCCCC---
Q 008927           92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKA-GDEP-SDITP-KEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ---  165 (548)
Q Consensus        92 ~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~-~~~~-~~lt~-~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~---  165 (548)
                      .-|... |++.||....+. +....+|+..... .+.. +-|+. ..+.........++-.++|++++|+|.-+..|   
T Consensus        72 ~~p~~~-g~~~y~~~~~~~-~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~  149 (414)
T PF02897_consen   72 SVPVRR-GGYYYYSRNQGG-KNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEW  149 (414)
T ss_dssp             ---EEE-TTEEEEEEE-SS--SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSE
T ss_pred             cccEEE-CCeEEEEEEcCC-CceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCce
Confidence            334444 899998876542 3455677765441 1222 33332 22211111111122345668889999865443   


Q ss_pred             -eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCC--CCCceeEEEEEECCCCCccCcEEeeec
Q 008927          166 -RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD--ALNSTTEIVAIALNGQNIQEPKVLVSG  242 (548)
Q Consensus       166 -~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~--~~~~~~~l~~idl~~g~~~~~~~L~~~  242 (548)
                       .|+++|+++  ++.  +....  ....+..+.|++||+.++|++-+....  .......||...+.++.. +.+.|.++
T Consensus       150 ~~l~v~Dl~t--g~~--l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~-~d~lvfe~  222 (414)
T PF02897_consen  150 YTLRVFDLET--GKF--LPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQS-EDELVFEE  222 (414)
T ss_dssp             EEEEEEETTT--TEE--EEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GG-G-EEEEC-
T ss_pred             EEEEEEECCC--CcC--cCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChH-hCeeEEee
Confidence             799999987  532  22110  012333489999999999986554211  011257899999988751 12466654


Q ss_pred             CC--c-eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCC--CceeeeEEEcCCCCCcccCCcCceECcCCcEEEE
Q 008927          243 SD--F-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN--GDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV  317 (548)
Q Consensus       243 ~~--~-~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~--g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~  317 (548)
                      .+  + +....+|+||++|+.......    ..+++|++++...  ... ..+++....    .......-..++.+|++
T Consensus       223 ~~~~~~~~~~~~s~d~~~l~i~~~~~~----~~s~v~~~d~~~~~~~~~-~~~~l~~~~----~~~~~~v~~~~~~~yi~  293 (414)
T PF02897_consen  223 PDEPFWFVSVSRSKDGRYLFISSSSGT----SESEVYLLDLDDGGSPDA-KPKLLSPRE----DGVEYYVDHHGDRLYIL  293 (414)
T ss_dssp             TTCTTSEEEEEE-TTSSEEEEEEESSS----SEEEEEEEECCCTTTSS--SEEEEEESS----SS-EEEEEEETTEEEEE
T ss_pred             cCCCcEEEEEEecCcccEEEEEEEccc----cCCeEEEEeccccCCCcC-CcEEEeCCC----CceEEEEEccCCEEEEe
Confidence            33  4 556789999998875553331    1379999999853  111 234443321    11221111224448888


Q ss_pred             EeCCCCeeeEEEEeccCCe---eE-eecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECC-CCc
Q 008927          318 TDRKNGFWNLHKWIESNNE---VL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-GHS  392 (548)
Q Consensus       318 sd~~~g~~~Ly~~d~~~g~---~~-~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~-~g~  392 (548)
                      ++.+.....|+.++++...   .+ .|.+...+..       ...+..     .++.|++...+++..+|.++++. +..
T Consensus       294 Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~-------l~~~~~-----~~~~Lvl~~~~~~~~~l~v~~~~~~~~  361 (414)
T PF02897_consen  294 TNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS-------LEDVSL-----FKDYLVLSYRENGSSRLRVYDLDDGKE  361 (414)
T ss_dssp             E-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE-------EEEEEE-----ETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred             eCCCCCCcEEEEecccccccccceeEEcCCCCcee-------EEEEEE-----ECCEEEEEEEECCccEEEEEECCCCcE
Confidence            9876777899999987765   23 3333211100       011223     47789999999999999999998 556


Q ss_pred             eEeecCC-CceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 008927          393 LSLLDIP-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLK  437 (548)
Q Consensus       393 ~~~l~~~-~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~  437 (548)
                      ...+..+ .+.+..+  ..+++.++|..++...|+.+|.+|+.+++.+
T Consensus       362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            6666654 3334555  4577899999999999999999999999864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.46  E-value=2.8e-11  Score=120.34  Aligned_cols=281  Identities=15%  Similarity=0.144  Sum_probs=186.9

Q ss_pred             CHHHHhcCCCccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCC-CCCCccccceeeCCeeeEEECCEEE
Q 008927           80 TADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITP-KEYAVRTTAQEYGGGAFRIFGDTVI  158 (548)
Q Consensus        80 t~~~l~~~~~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~-~~~~~r~~v~~ygg~~~~~~~~~i~  158 (548)
                      +-|.+..+...++.|++. |+||||+..+   +|-.+|+..+.+| ...|+.|. .++..|..         ..||++|+
T Consensus       217 tFeK~vdl~~~vS~PmIV-~~RvYFlsD~---eG~GnlYSvdldG-kDlrrHTnFtdYY~R~~---------nsDGkrIv  282 (668)
T COG4946         217 TFEKFVDLDGNVSSPMIV-GERVYFLSDH---EGVGNLYSVDLDG-KDLRRHTNFTDYYPRNA---------NSDGKRIV  282 (668)
T ss_pred             ceeeeeecCCCcCCceEE-cceEEEEecc---cCccceEEeccCC-chhhhcCCchhcccccc---------CCCCcEEE
Confidence            346666677889999999 9999999976   6999999998875 56788886 45555533         35788999


Q ss_pred             EEeCCCCeEEEEeCCCCCCCceecCCC---C---CC----CCceec-ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          159 FSNYKDQRLYKHSIDSKDSSPLPITPD---Y---GE----PLVSYA-DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       159 F~~~~~~~Ly~~~~~~~~~~~~~lT~~---~---~~----~~~~~~-~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      |+.  .+.||++|+++  ...+.|--+   .   +.    .+..|. +++.+ +|..|++|+.          ...++++
T Consensus       283 Fq~--~GdIylydP~t--d~lekldI~lpl~rk~k~~k~~~pskyledfa~~-~Gd~ia~VSR----------GkaFi~~  347 (668)
T COG4946         283 FQN--AGDIYLYDPET--DSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVV-NGDYIALVSR----------GKAFIMR  347 (668)
T ss_pred             Eec--CCcEEEeCCCc--CcceeeecCCccccccccccccCHHHhhhhhccC-CCcEEEEEec----------CcEEEEC
Confidence            998  66799999986  344433221   0   00    011222 23333 6899999853          4678888


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      ...+-   ..++-+... +..-+++-|++.++ +..+      ++..|-+++.+ +|+   ...+...-    ..+....
T Consensus       348 ~~~~~---~iqv~~~~~-VrY~r~~~~~e~~v-igt~------dgD~l~iyd~~-~~e---~kr~e~~l----g~I~av~  408 (668)
T COG4946         348 PWDGY---SIQVGKKGG-VRYRRIQVDPEGDV-IGTN------DGDKLGIYDKD-GGE---VKRIEKDL----GNIEAVK  408 (668)
T ss_pred             CCCCe---eEEcCCCCc-eEEEEEccCCcceE-Eecc------CCceEEEEecC-Cce---EEEeeCCc----cceEEEE
Confidence            87776   555554333 45556777888655 3312      34578888987 354   33343332    4567788


Q ss_pred             ECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC-CeEEEEE
Q 008927          308 WSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN-GRSYLGI  385 (548)
Q Consensus       308 wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~-g~~~L~~  385 (548)
                      -++||+ +++..|+    .+||.+|+++|+++.+...+  .+.      ...|.|.|   ++++|++..-.+ -..+|.+
T Consensus       409 vs~dGK~~vvaNdr----~el~vididngnv~~idkS~--~~l------Itdf~~~~---nsr~iAYafP~gy~tq~Ikl  473 (668)
T COG4946         409 VSPDGKKVVVANDR----FELWVIDIDNGNVRLIDKSE--YGL------ITDFDWHP---NSRWIAYAFPEGYYTQSIKL  473 (668)
T ss_pred             EcCCCcEEEEEcCc----eEEEEEEecCCCeeEecccc--cce------eEEEEEcC---CceeEEEecCcceeeeeEEE
Confidence            899999 5444444    68999999999988775321  111      11255654   667776654322 2567889


Q ss_pred             EECCCCceEeecCCC-ceeEe-eeecCCEEEEEEecCCCC
Q 008927          386 LDDFGHSLSLLDIPF-TDIDN-ITLGNDCLFVEGASGVEP  423 (548)
Q Consensus       386 ~dl~~g~~~~l~~~~-~~~~~-~s~d~~~l~~~~ss~~~p  423 (548)
                      +|.+++++-.++++. .++++ +.+|++.|||++...-.|
T Consensus       474 ydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdP  513 (668)
T COG4946         474 YDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDP  513 (668)
T ss_pred             EecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccCC
Confidence            999999999888764 34554 489999999999765444

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.36  E-value=7.3e-11  Score=117.44  Aligned_cols=240  Identities=19%  Similarity=0.205  Sum_probs=151.5

Q ss_pred             ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCC
Q 008927          153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (548)
Q Consensus       153 ~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~  232 (548)
                      .|++|+|+..  ..||.+++..  +++++||...    .-...+.++|||++|+|.+--...  .....+||+++.++|+
T Consensus        49 ~GD~IiFt~~--DdlWe~slk~--g~~~ritS~l----GVvnn~kf~pdGrkvaf~rv~~~s--s~~taDly~v~~e~Ge  118 (668)
T COG4946          49 YGDRIIFTCC--DDLWEYSLKD--GKPLRITSGL----GVVNNPKFSPDGRKVAFSRVMLGS--SLQTADLYVVPSEDGE  118 (668)
T ss_pred             cCcEEEEEec--hHHHHhhhcc--CCeeEEeccc----ceeccccCCCCCcEEEEEEEEecC--CCccccEEEEeCCCCc
Confidence            3789999984  4599999987  8999999973    346678999999999995422111  0123689999999999


Q ss_pred             ccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcC
Q 008927          233 IQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK  311 (548)
Q Consensus       233 ~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspD  311 (548)
                         .++|+- |..|..-.-|+|||+-|+......|-..  -++||-+.+++ .+. +.  +.-++      .....+ .|
T Consensus       119 ---~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q--~~~lYkv~~dg-~~~-e~--LnlGp------athiv~-~d  182 (668)
T COG4946         119 ---AKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQ--WTELYKVNVDG-IKT-EP--LNLGP------ATHIVI-KD  182 (668)
T ss_pred             ---EEEEEEeccccceeeccCCCCCEEEEeccCCCccc--ceeeeEEccCC-cee-ee--ccCCc------eeeEEE-eC
Confidence               888863 4445444569999998876543333222  35788888763 321 11  11111      112222 35


Q ss_pred             CcEEEEEeC---------CCC-eeeEEEEeccCC-eeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCe
Q 008927          312 GELFFVTDR---------KNG-FWNLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR  380 (548)
Q Consensus       312 G~L~~~sd~---------~~g-~~~Ly~~d~~~g-~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~  380 (548)
                      |.++.-.+.         ..| ...||.-. .+| ..+.+...+..+..|.         .     -++++||.+..+|.
T Consensus       183 g~ivigRntydLP~WK~YkGGtrGklWis~-d~g~tFeK~vdl~~~vS~Pm---------I-----V~~RvYFlsD~eG~  247 (668)
T COG4946         183 GIIVIGRNTYDLPHWKGYKGGTRGKLWISS-DGGKTFEKFVDLDGNVSSPM---------I-----VGERVYFLSDHEGV  247 (668)
T ss_pred             CEEEEccCcccCcccccccCCccceEEEEe-cCCcceeeeeecCCCcCCce---------E-----EcceEEEEecccCc
Confidence            532222111         011 22355433 344 3444443333333332         1     36789999999999


Q ss_pred             EEEEEEECCCCceEeecCCCceeE--eeeecCCEEEEEEecCCCCCeEEEEEcCCCceeee
Q 008927          381 SYLGILDDFGHSLSLLDIPFTDID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV  439 (548)
Q Consensus       381 ~~L~~~dl~~g~~~~l~~~~~~~~--~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~  439 (548)
                      .+||.+|+++..++.-+ .|.+..  .+..||++|+|...     ++||++|+++..++.+
T Consensus       248 GnlYSvdldGkDlrrHT-nFtdYY~R~~nsDGkrIvFq~~-----GdIylydP~td~lekl  302 (668)
T COG4946         248 GNLYSVDLDGKDLRRHT-NFTDYYPRNANSDGKRIVFQNA-----GDIYLYDPETDSLEKL  302 (668)
T ss_pred             cceEEeccCCchhhhcC-CchhccccccCCCCcEEEEecC-----CcEEEeCCCcCcceee
Confidence            99999999877666543 344433  34679999999764     6899999988776554

>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]

Probab=99.29  E-value=5.6e-11  Score=122.81  Aligned_cols=166  Identities=17%  Similarity=0.173  Sum_probs=127.5

Q ss_pred             CCEEEEEEEeCCeEEEEEEECCCCceEeecCCCc-eeE--eeeecCCEEEEEEecCCCCCeEEEEEcCCCceeeeeeEEE
Q 008927          368 KNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT-DID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVV  444 (548)
Q Consensus       368 ~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~-~~~--~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~~~~  444 (548)
                      .++|+....++...+|.+.+..+-..+.|..+.. .+.  ..+.++..+++..++.+.|+.+|++++.+++++      +
T Consensus       306 ~~~~va~~l~nv~~~l~v~~~~g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe------~  379 (648)
T COG1505         306 KDKLVAGTLDNVSGRLEVYDLKGERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGELE------V  379 (648)
T ss_pred             cCeEEeeeehhccceEEEeccCceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEecCCceeh------h
Confidence            4566666666666677777776645667766533 233  335677888888899999999999999888753      3


Q ss_pred             ecCCCCCCccCCCccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcC
Q 008927          445 WSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG  524 (548)
Q Consensus       445 l~~~~~~~l~~~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrG  524 (548)
                      +... ...++...+ ..|.+...|. ||..|+.+++. ++..+    + +.|++|+.|||-.-.-.|.|+..+-+|..||
T Consensus       380 ik~~-p~~FDa~~~-~veQ~~atSk-DGT~IPYFiv~-K~~~~----d-~~pTll~aYGGF~vsltP~fs~~~~~WLerG  450 (648)
T COG1505         380 IREQ-PVQFDADNY-EVEQFFATSK-DGTRIPYFIVR-KGAKK----D-ENPTLLYAYGGFNISLTPRFSGSRKLWLERG  450 (648)
T ss_pred             hhhc-cCCcCccCc-eEEEEEEEcC-CCccccEEEEe-cCCcC----C-CCceEEEeccccccccCCccchhhHHHHhcC
Confidence            3332 234454444 4677778897 99999999998 76332    3 6799999999999999999999999999999


Q ss_pred             cEEEEeCCCCCCCCChhhhhcccC
Q 008927          525 WAFVDVNYGGSTGLSSVPSTSIFV  548 (548)
Q Consensus       525 yaVl~~NyRGStGyG~~f~~ai~~  548 (548)
                      .+.++.|.||+.-||-+|++|-.|
T Consensus       451 g~~v~ANIRGGGEfGp~WH~Aa~k  474 (648)
T COG1505         451 GVFVLANIRGGGEFGPEWHQAGMK  474 (648)
T ss_pred             CeEEEEecccCCccCHHHHHHHhh
Confidence            999999999999999999998643

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=99.20  E-value=3.6e-09  Score=106.11  Aligned_cols=274  Identities=12%  Similarity=0.163  Sum_probs=139.4

Q ss_pred             CCCcccCCCCC-CccccceeeCCeeeEEECCEEEEEeCCCC--eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCC
Q 008927          126 DEPSDITPKEY-AVRTTAQEYGGGAFRIFGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRF  202 (548)
Q Consensus       126 ~~~~~lt~~~~-~~r~~v~~ygg~~~~~~~~~i~F~~~~~~--~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG  202 (548)
                      -+..+||+.+. +.+.-   +=...|..||++|+|.++.++  +||++|+++  ++.+|||.+.+  ...+ ...++|+.
T Consensus        21 ~~VtrLT~~~~~~h~~Y---F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t--~~i~QLTdg~g--~~~~-g~~~s~~~   92 (386)
T PF14583_consen   21 HRVTRLTPPDGHSHRLY---FYQNCFTDDGRKLLFASDFDGNRNLYLLDLAT--GEITQLTDGPG--DNTF-GGFLSPDD   92 (386)
T ss_dssp             -EEEE-S-TTS-EE------TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS---B-TT-T-EE-TTS
T ss_pred             ceEEEecCCCCccccee---ecCCCcCCCCCEEEEEeccCCCcceEEEEccc--CEEEECccCCC--CCcc-ceEEecCC
Confidence            35778887543 22211   123578888999999887664  999999998  89999999742  1223 45789999


Q ss_pred             CEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC-cee--eeEECCCCCEEEEEEecCCCC-C---C-----
Q 008927          203 NRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD-FYA--FPRMDPRGERMAWIEWHHPNM-P---W-----  270 (548)
Q Consensus       203 ~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~-~~~--~p~~SPDGk~La~~~~~~~~~-p---~-----  270 (548)
                      +.|+|+...         ..|+.+||++++   .+.|..-++ +..  ......|+.+++.+.....+. +   |     
T Consensus        93 ~~~~Yv~~~---------~~l~~vdL~T~e---~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e  160 (386)
T PF14583_consen   93 RALYYVKNG---------RSLRRVDLDTLE---ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFRE  160 (386)
T ss_dssp             SEEEEEETT---------TEEEEEETTT-----EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHH
T ss_pred             CeEEEEECC---------CeEEEEECCcCc---EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHH
Confidence            999998532         379999999998   778876544 433  333467899988776433221 1   1     


Q ss_pred             -----CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCC--CCe-eeEEEEeccCCeeEeec
Q 008927          271 -----DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK--NGF-WNLHKWIESNNEVLAIY  341 (548)
Q Consensus       271 -----~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~--~g~-~~Ly~~d~~~g~~~~l~  341 (548)
                           -...|+.+++. +|+   .+.+....    .....+.+||..- ++..+-.+  ... ..||.++.+++..+.|.
T Consensus       161 ~~~a~p~~~i~~idl~-tG~---~~~v~~~~----~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~  232 (386)
T PF14583_consen  161 FYEARPHCRIFTIDLK-TGE---RKVVFEDT----DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH  232 (386)
T ss_dssp             HHHC---EEEEEEETT-T-----EEEEEEES----S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS
T ss_pred             HHhhCCCceEEEEECC-CCc---eeEEEecC----ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee
Confidence                 12589999998 465   33333322    4567788888644 54444321  111 36999998887777776


Q ss_pred             cccc--ccCCCcccccCcceeeeeecCCCCEEEEEEE-eCC-eEEEEEEECCCCceEeec-CCCceeEeeeecCCEEEEE
Q 008927          342 SLDA--EFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNG-RSYLGILDDFGHSLSLLD-IPFTDIDNITLGNDCLFVE  416 (548)
Q Consensus       342 ~~~~--d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~-~~g-~~~L~~~dl~~g~~~~l~-~~~~~~~~~s~d~~~l~~~  416 (548)
                      +...  ..+..-         |.+   ||..|++... .++ ...|+.+|+++++.+.+. .+....-..+.|++.++==
T Consensus       233 ~~~~~e~~gHEf---------w~~---DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGD  300 (386)
T PF14583_consen  233 RRMEGESVGHEF---------WVP---DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGD  300 (386)
T ss_dssp             ---TTEEEEEEE---------E-T---TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEE
T ss_pred             cCCCCccccccc---------ccC---CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEec
Confidence            3211  111122         333   8888888655 444 457899999999877654 2332211113455533222


Q ss_pred             EecC------------CCCCeEEEEEcCCCceeee
Q 008927          417 GASG------------VEPSSVAKVTLDDHKLKAV  439 (548)
Q Consensus       417 ~ss~------------~~p~~l~~~d~~~~~~~~~  439 (548)
                      ++..            ..-+-||+++++.+..+.|
T Consensus       301 G~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l  335 (386)
T PF14583_consen  301 GGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKL  335 (386)
T ss_dssp             E-------------------EEEEEETTTTEEEEE
T ss_pred             CCCCCccccccccceecCCcEEEEeccccCceeee
Confidence            2211            1123677788877765433

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.11  E-value=2.5e-07  Score=92.15  Aligned_cols=243  Identities=8%  Similarity=0.005  Sum_probs=135.2

Q ss_pred             eeeEEECCEEEEEeCCCCeEEEEeCCCCCCCcee-cCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~-lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      ..|+++++.++.....++.|+++++.+  ++... +....     ....+.|+|||+.+++....        ...|.++
T Consensus        36 l~~~~dg~~l~~~~~~~~~v~~~d~~~--~~~~~~~~~~~-----~~~~~~~~~~g~~l~~~~~~--------~~~l~~~  100 (300)
T TIGR03866        36 ITLSKDGKLLYVCASDSDTIQVIDLAT--GEVIGTLPSGP-----DPELFALHPNGKILYIANED--------DNLVTVI  100 (300)
T ss_pred             eEECCCCCEEEEEECCCCeEEEEECCC--CcEEEeccCCC-----CccEEEECCCCCEEEEEcCC--------CCeEEEE
Confidence            467778877777766678899999876  54433 33321     12346799999977554322        1368999


Q ss_pred             ECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCc
Q 008927          227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (548)
Q Consensus       227 dl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~  306 (548)
                      |+.+++   ...............|+|||+.|+....+       ...+++++.+. ++.  ...+...     ......
T Consensus       101 d~~~~~---~~~~~~~~~~~~~~~~~~dg~~l~~~~~~-------~~~~~~~d~~~-~~~--~~~~~~~-----~~~~~~  162 (300)
T TIGR03866       101 DIETRK---VLAEIPVGVEPEGMAVSPDGKIVVNTSET-------TNMAHFIDTKT-YEI--VDNVLVD-----QRPRFA  162 (300)
T ss_pred             ECCCCe---EEeEeeCCCCcceEEECCCCCEEEEEecC-------CCeEEEEeCCC-CeE--EEEEEcC-----CCccEE
Confidence            998765   22212211123456899999988755421       23466667663 432  1112111     233557


Q ss_pred             eECcCCc-EEEEEeCCCCeeeEEEEeccCCee-EeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEE
Q 008927          307 KWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (548)
Q Consensus       307 ~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~-~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~  384 (548)
                      .|+|||+ |++.++. .+  .|+.+|+++++. +.+....... .+.. .....+.+.+   +++.+++....  ...+.
T Consensus       163 ~~s~dg~~l~~~~~~-~~--~v~i~d~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~~s~---dg~~~~~~~~~--~~~i~  232 (300)
T TIGR03866       163 EFTADGKELWVSSEI-GG--TVSVIDVATRKVIKKITFEIPGV-HPEA-VQPVGIKLTK---DGKTAFVALGP--ANRVA  232 (300)
T ss_pred             EECCCCCEEEEEcCC-CC--EEEEEEcCcceeeeeeeeccccc-cccc-CCccceEECC---CCCEEEEEcCC--CCeEE
Confidence            8999999 5554443 33  577888887764 3332110000 0000 0011234443   67766544322  23588


Q ss_pred             EEECCCCceEeecCCCceeEe--eeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          385 ILDDFGHSLSLLDIPFTDIDN--ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       385 ~~dl~~g~~~~l~~~~~~~~~--~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      ++|++++++.........+..  ++++++.|+....   .-..|.++|+++++.
T Consensus       233 v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       233 VVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNG---VSNDVSVIDVAALKV  283 (300)
T ss_pred             EEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcC---CCCeEEEEECCCCcE
Confidence            889988876532211112222  3678887654432   235799999987763

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PRK13616 lipoprotein LpqB; Provisional

Probab=99.05  E-value=3.6e-08  Score=106.93  Aligned_cols=200  Identities=11%  Similarity=0.050  Sum_probs=118.4

Q ss_pred             EEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCc
Q 008927          157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (548)
Q Consensus       157 i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~  236 (548)
                      ++.+.  +++|++++-    +..+++..... ......++.+||||+.++|+....++ .++.+.+||+++. ++.   .
T Consensus       323 ~~~v~--~G~l~~~~~----~~~~pv~g~~g-~~~~vsspaiSpdG~~vA~v~~~~~~-~~d~~s~Lwv~~~-gg~---~  390 (591)
T PRK13616        323 LHALV--DGSLVSVDG----QGVTPVPGAFG-QMGNITSAALSRSGRQVAAVVTLGRG-APDPASSLWVGPL-GGV---A  390 (591)
T ss_pred             ceEEE--CCeEEEecC----CCeeeCCCccc-cccCcccceECCCCCEEEEEEeecCC-CCCcceEEEEEeC-CCc---c
Confidence            44444  566776642    33444433211 11235678999999999998643321 1225679999997 444   5


Q ss_pred             EEeeecCCceeeeEECCCCCEEEEEEecCCC----CCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCC
Q 008927          237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPN----MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (548)
Q Consensus       237 ~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~----~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG  312 (548)
                      +.++.+.. ...|+|||||++|+|+....+-    ......+||+++++. ++.   +.  ..+    ..+..+.|||||
T Consensus       391 ~~lt~g~~-~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~-ge~---~~--~~~----g~Issl~wSpDG  459 (591)
T PRK13616        391 VQVLEGHS-LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDA-SAV---AS--RVP----GPISELQLSRDG  459 (591)
T ss_pred             eeeecCCC-CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccC-chh---hh--ccC----CCcCeEEECCCC
Confidence            77777654 7899999999999887622110    011246888888873 442   22  112    458899999999


Q ss_pred             c-EEEEEeCCCCeeeEEE---EeccCCeeEeeccc---ccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927          313 E-LFFVTDRKNGFWNLHK---WIESNNEVLAIYSL---DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (548)
Q Consensus       313 ~-L~~~sd~~~g~~~Ly~---~d~~~g~~~~l~~~---~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~  385 (548)
                      + |+|+.+   |  +||+   ...++|+ ..|+..   .......     .....|.    ++..|+.. ..++...++.
T Consensus       460 ~RiA~i~~---g--~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~-----~~~l~W~----~~~~L~V~-~~~~~~~v~~  523 (591)
T PRK13616        460 VRAAMIIG---G--KVYLAVVEQTEDGQ-YALTNPREVGPGLGDT-----AVSLDWR----TGDSLVVG-RSDPEHPVWY  523 (591)
T ss_pred             CEEEEEEC---C--EEEEEEEEeCCCCc-eeecccEEeecccCCc-----cccceEe----cCCEEEEE-ecCCCCceEE
Confidence            9 999874   3  5666   4445665 334210   0011110     0123455    55667644 4456677899


Q ss_pred             EECCCCceEe
Q 008927          386 LDDFGHSLSL  395 (548)
Q Consensus       386 ~dl~~g~~~~  395 (548)
                      +++++...+.
T Consensus       524 v~vDG~~~~~  533 (591)
T PRK13616        524 VNLDGSNSDA  533 (591)
T ss_pred             EecCCccccc
Confidence            9987554443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.03  E-value=9.3e-07  Score=86.44  Aligned_cols=275  Identities=13%  Similarity=0.143  Sum_probs=149.5

Q ss_pred             CccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCe-ee-EEE-CCEEEEE-eCCC
Q 008927           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGG-AF-RIF-GDTVIFS-NYKD  164 (548)
Q Consensus        89 ~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~-~~-~~~-~~~i~F~-~~~~  164 (548)
                      ....-+.++|.++..|+-..+.++|.-.-+.++.+. |....|....        ..|.+ .+ +.| +++.+|+ +...
T Consensus        40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~-G~Lt~ln~~~--------~~g~~p~yvsvd~~g~~vf~AnY~~  110 (346)
T COG2706          40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD-GRLTFLNRQT--------LPGSPPCYVSVDEDGRFVFVANYHS  110 (346)
T ss_pred             CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC-CeEEEeeccc--------cCCCCCeEEEECCCCCEEEEEEccC
Confidence            555667889855455554456667887778887542 3443332111        11222 33 333 2245555 4445


Q ss_pred             CeEEEEeCCCCCCCceec---CCCCCC-CCce-----ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccC
Q 008927          165 QRLYKHSIDSKDSSPLPI---TPDYGE-PLVS-----YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (548)
Q Consensus       165 ~~Ly~~~~~~~~~~~~~l---T~~~~~-~~~~-----~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~  235 (548)
                      +.|-++++..+ |.+..+   ....+. +-.|     .....+.|||+.|+.+ .-.       ...|++.+++.|....
T Consensus       111 g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~-DLG-------~Dri~~y~~~dg~L~~  181 (346)
T COG2706         111 GSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP-DLG-------TDRIFLYDLDDGKLTP  181 (346)
T ss_pred             ceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe-ecC-------CceEEEEEcccCcccc
Confidence            66666666432 333222   111100 0011     1223589999986554 322       1356777777665211


Q ss_pred             --cEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC-CCceeeeEEEcCCCCC--cccCCcCceECc
Q 008927          236 --PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPT--IVESPTEPKWSS  310 (548)
Q Consensus       236 --~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~-~g~~~~~~~l~~~~~~--~~~~~~~~~wsp  310 (548)
                        .-.+..+.+ -.+..|.|+|| +||+...      -.+.+-++..+. .|++.+...+..-+.+  ...+.....-++
T Consensus       182 ~~~~~v~~G~G-PRHi~FHpn~k-~aY~v~E------L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~  253 (346)
T COG2706         182 ADPAEVKPGAG-PRHIVFHPNGK-YAYLVNE------LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP  253 (346)
T ss_pred             ccccccCCCCC-cceEEEcCCCc-EEEEEec------cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence              112222322 24557999999 5666522      145666666654 3555444433221100  003445677899


Q ss_pred             CCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCC
Q 008927          311 KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG  390 (548)
Q Consensus       311 DG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~  390 (548)
                      ||+++|++||+...-.+|.++..+|+.+.+.....+-..|      +.|.+.+   +++.|++...+...-.+|.+|.++
T Consensus       254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~P------R~F~i~~---~g~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFP------RDFNINP---SGRFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCC------ccceeCC---CCCEEEEEccCCCcEEEEEEcCCC
Confidence            9998889998666667889999888866543211111112      2355653   566666655566778899999999


Q ss_pred             CceEeecC
Q 008927          391 HSLSLLDI  398 (548)
Q Consensus       391 g~~~~l~~  398 (548)
                      |++.++..
T Consensus       325 G~L~~~~~  332 (346)
T COG2706         325 GRLTLLGR  332 (346)
T ss_pred             ceEEeccc
Confidence            99887754

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.93  E-value=2.7e-08  Score=107.87  Aligned_cols=165  Identities=10%  Similarity=0.045  Sum_probs=109.8

Q ss_pred             CeeeEEECCEEEEEe-------CCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCC---CC
Q 008927          147 GGAFRIFGDTVIFSN-------YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ---DA  216 (548)
Q Consensus       147 g~~~~~~~~~i~F~~-------~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~---~~  216 (548)
                      ..+.+++|+.|+|..       +...+||+.+..   ++.+++|...     ....|.|||||++|+|++....-   ..
T Consensus       354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g---g~~~~lt~g~-----~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG---GVAVQVLEGH-----SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cceECCCCCEEEEEEeecCCCCCcceEEEEEeCC---CcceeeecCC-----CCCCceECCCCCceEEEecCcceEEEec
Confidence            346788999999997       223589999974   5668888752     47889999999999998532110   00


Q ss_pred             CCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEec--CCCc--eeeeEEE
Q 008927          217 LNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS--ENGD--VYKRVCV  292 (548)
Q Consensus       217 ~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~--~~g~--~~~~~~l  292 (548)
                      .....+||++++++++   .++  .....+..++|||||++|||+.         ..+||+.-+.  .+|+  +.+.+.+
T Consensus       426 ~~~~gql~~~~vd~ge---~~~--~~~g~Issl~wSpDG~RiA~i~---------~g~v~Va~Vvr~~~G~~~l~~~~~l  491 (591)
T PRK13616        426 DPATGQLARTPVDASA---VAS--RVPGPISELQLSRDGVRAAMII---------GGKVYLAVVEQTEDGQYALTNPREV  491 (591)
T ss_pred             cCCCceEEEEeccCch---hhh--ccCCCcCeEEECCCCCEEEEEE---------CCEEEEEEEEeCCCCceeecccEEe
Confidence            0123589999999887   554  2233478899999999999987         2478884433  2453  2222334


Q ss_pred             cCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeE
Q 008927          293 AGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL  338 (548)
Q Consensus       293 ~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~  338 (548)
                      .... .  .....+.|..|++|+...+  .+...+|++++++...+
T Consensus       492 ~~~l-~--~~~~~l~W~~~~~L~V~~~--~~~~~v~~v~vDG~~~~  532 (591)
T PRK13616        492 GPGL-G--DTAVSLDWRTGDSLVVGRS--DPEHPVWYVNLDGSNSD  532 (591)
T ss_pred             eccc-C--CccccceEecCCEEEEEec--CCCCceEEEecCCcccc
Confidence            3322 1  2346789999999765544  34456899998655433

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.93  E-value=5.5e-07  Score=92.43  Aligned_cols=279  Identities=9%  Similarity=0.058  Sum_probs=143.4

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L  167 (548)
                      ...+.+.++| ++.+|.+.....+.|....+.++.+. +..+.+....-.-..+.|    .+..++++.|+-.+..++.+
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-g~L~~~~~~~~~g~~p~~----i~~~~~g~~l~vany~~g~v  111 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-GTLTLLNSVPSGGSSPCH----IAVDPDGRFLYVANYGGGSV  111 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-TEEEEEEEEEESSSCEEE----EEECTTSSEEEEEETTTTEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc-ceeEEeeeeccCCCCcEE----EEEecCCCEEEEEEccCCeE
Confidence            5566778888 66666664322134655556665441 233332211000011110    02233566777777778888


Q ss_pred             EEEeCCCCCCCceec---CC----CCC---CCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCC--CccC
Q 008927          168 YKHSIDSKDSSPLPI---TP----DYG---EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ--NIQE  235 (548)
Q Consensus       168 y~~~~~~~~~~~~~l---T~----~~~---~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g--~~~~  235 (548)
                      .+++++.+ +.....   ..    ...   ..........++|||++|+. .....       ..|++++++..  +...
T Consensus       112 ~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v-~dlG~-------D~v~~~~~~~~~~~l~~  182 (345)
T PF10282_consen  112 SVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV-PDLGA-------DRVYVYDIDDDTGKLTP  182 (345)
T ss_dssp             EEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE-EETTT-------TEEEEEEE-TTS-TEEE
T ss_pred             EEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE-EecCC-------CEEEEEEEeCCCceEEE
Confidence            77777642 333222   10    000   00112334679999998754 33321       34666665543  3100


Q ss_pred             cEEeeecCC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEec-CCCceeeeEEEcCCCCCc-c-cCCcCceECcC
Q 008927          236 PKVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRVCVAGFDPTI-V-ESPTEPKWSSK  311 (548)
Q Consensus       236 ~~~L~~~~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~-~~g~~~~~~~l~~~~~~~-~-~~~~~~~wspD  311 (548)
                      ...+.-..+ .-.+..|+|||++++ +...      ....|.+++++ .+|.++....+...+... . ........+||
T Consensus       183 ~~~~~~~~G~GPRh~~f~pdg~~~Y-v~~e------~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd  255 (345)
T PF10282_consen  183 VDSIKVPPGSGPRHLAFSPDGKYAY-VVNE------LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD  255 (345)
T ss_dssp             EEEEECSTTSSEEEEEE-TTSSEEE-EEET------TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT
T ss_pred             eeccccccCCCCcEEEEcCCcCEEE-EecC------CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC
Confidence            011111111 124568999999764 5522      24678888887 345543333332211000 0 13456788999


Q ss_pred             CcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCC
Q 008927          312 GELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH  391 (548)
Q Consensus       312 G~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g  391 (548)
                      |+.+|+++++.+.-.+|.+|.++|+++.+......-..|      ..+.+.|   +++.|+......+.-.++.+|.++|
T Consensus       256 g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~P------r~~~~s~---~g~~l~Va~~~s~~v~vf~~d~~tG  326 (345)
T PF10282_consen  256 GRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFP------RHFAFSP---DGRYLYVANQDSNTVSVFDIDPDTG  326 (345)
T ss_dssp             SSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSE------EEEEE-T---TSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             CCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCc------cEEEEeC---CCCEEEEEecCCCeEEEEEEeCCCC
Confidence            998888888666667777776778776553211111112      2345554   7777776555667788888999999


Q ss_pred             ceEeec
Q 008927          392 SLSLLD  397 (548)
Q Consensus       392 ~~~~l~  397 (548)
                      +++.+.
T Consensus       327 ~l~~~~  332 (345)
T PF10282_consen  327 KLTPVG  332 (345)
T ss_dssp             EEEEEE
T ss_pred             cEEEec
Confidence            877553

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.92  E-value=1.6e-06  Score=86.23  Aligned_cols=204  Identities=12%  Similarity=0.070  Sum_probs=114.2

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      .|+++++.++.....++.|+++++..  ++. ..+...     .....+.|+|||+.+++...+.        ..++.+|
T Consensus        79 ~~~~~g~~l~~~~~~~~~l~~~d~~~--~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~--------~~~~~~d  143 (300)
T TIGR03866        79 ALHPNGKILYIANEDDNLVTVIDIET--RKVLAEIPVG-----VEPEGMAVSPDGKIVVNTSETT--------NMAHFID  143 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCC--CeEEeEeeCC-----CCcceEEECCCCCEEEEEecCC--------CeEEEEe
Confidence            56677777766665677899999875  332 222211     1234578999999877753321        2456678


Q ss_pred             CCCCCccCcEE-eeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCC-C--CCcccCC
Q 008927          228 LNGQNIQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF-D--PTIVESP  303 (548)
Q Consensus       228 l~~g~~~~~~~-L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~-~--~~~~~~~  303 (548)
                      +.+++   ... +..+ .......|+|||++|++.. .      ....|++.|++. ++.  ...+... .  .......
T Consensus       144 ~~~~~---~~~~~~~~-~~~~~~~~s~dg~~l~~~~-~------~~~~v~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~  209 (300)
T TIGR03866       144 TKTYE---IVDNVLVD-QRPRFAEFTADGKELWVSS-E------IGGTVSVIDVAT-RKV--IKKITFEIPGVHPEAVQP  209 (300)
T ss_pred             CCCCe---EEEEEEcC-CCccEEEECCCCCEEEEEc-C------CCCEEEEEEcCc-cee--eeeeeecccccccccCCc
Confidence            87765   322 2212 1223468999999886443 1      135789999874 432  1212110 0  0000123


Q ss_pred             cCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEE
Q 008927          304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL  383 (548)
Q Consensus       304 ~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L  383 (548)
                      ....|+|||+.+|+.....  ..|.++|+++++.......    +...+     ...|.|   +++.|+.....  ...|
T Consensus       210 ~~i~~s~dg~~~~~~~~~~--~~i~v~d~~~~~~~~~~~~----~~~~~-----~~~~~~---~g~~l~~~~~~--~~~i  273 (300)
T TIGR03866       210 VGIKLTKDGKTAFVALGPA--NRVAVVDAKTYEVLDYLLV----GQRVW-----QLAFTP---DEKYLLTTNGV--SNDV  273 (300)
T ss_pred             cceEECCCCCEEEEEcCCC--CeEEEEECCCCcEEEEEEe----CCCcc-----eEEECC---CCCEEEEEcCC--CCeE
Confidence            4578999999544543212  3588889887776433211    11122     234554   77777644322  3368


Q ss_pred             EEEECCCCce-Eeec
Q 008927          384 GILDDFGHSL-SLLD  397 (548)
Q Consensus       384 ~~~dl~~g~~-~~l~  397 (548)
                      .++|+++++. +.+.
T Consensus       274 ~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       274 SVIDVAALKVIKSIK  288 (300)
T ss_pred             EEEECCCCcEEEEEE
Confidence            8899988874 4444

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.86  E-value=3.6e-06  Score=85.84  Aligned_cols=258  Identities=12%  Similarity=0.091  Sum_probs=126.4

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      .++++++.|+-....++.|+.++++.+ +..+.+....  .........++|||+.|+.....        .+.|.++++
T Consensus        41 ~~spd~~~lyv~~~~~~~i~~~~~~~~-g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~--------~~~v~v~~~  109 (330)
T PRK11028         41 VISPDKRHLYVGVRPEFRVLSYRIADD-GALTFAAESP--LPGSPTHISTDHQGRFLFSASYN--------ANCVSVSPL  109 (330)
T ss_pred             EECCCCCEEEEEECCCCcEEEEEECCC-CceEEeeeec--CCCCceEEEECCCCCEEEEEEcC--------CCeEEEEEE
Confidence            466777777666655677766665421 3333222110  01123356799999987554322        146777777


Q ss_pred             CC-CCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeee----EEEcCCCCCcccCC
Q 008927          229 NG-QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR----VCVAGFDPTIVESP  303 (548)
Q Consensus       229 ~~-g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~----~~l~~~~~~~~~~~  303 (548)
                      +. +...+......+...-....++|||++|+ +...      ....|++++++..|.+...    ..+..+     ...
T Consensus       110 ~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~-v~~~------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p  177 (330)
T PRK11028        110 DKDGIPVAPIQIIEGLEGCHSANIDPDNRTLW-VPCL------KEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGP  177 (330)
T ss_pred             CCCCCCCCceeeccCCCcccEeEeCCCCCEEE-EeeC------CCCEEEEEEECCCCcccccCCCceecCCC-----CCC
Confidence            53 32100111111211112346899999875 4422      2457999999754543210    111111     234


Q ss_pred             cCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecc---cccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCe
Q 008927          304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR  380 (548)
Q Consensus       304 ~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~---~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~  380 (548)
                      ....|+|||+++|+.+...+.-.+|.++..+++.+.+..   .......+.|..   .+.+.|   +++.||......+.
T Consensus       178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~i~~~p---dg~~lyv~~~~~~~  251 (330)
T PRK11028        178 RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA---DIHITP---DGRHLYACDRTASL  251 (330)
T ss_pred             ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce---eEEECC---CCCEEEEecCCCCe
Confidence            567999999966666553555555555543455433211   111122233321   234544   77777654222344


Q ss_pred             EEEEEEECCCCceEeec---CCC-ceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          381 SYLGILDDFGHSLSLLD---IPF-TDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       381 ~~L~~~dl~~g~~~~l~---~~~-~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      -.++.++.+++..+.+.   .+. ..--.+++|+++|++.. .....-.+|.+|.+++.+
T Consensus       252 I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~-~~~~~v~v~~~~~~~g~l  310 (330)
T PRK11028        252 ISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAG-QKSHHISVYEIDGETGLL  310 (330)
T ss_pred             EEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEE-ccCCcEEEEEEcCCCCcE
Confidence            44444544444433222   111 01112367888877654 323333455555555553

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.78  E-value=1.1e-05  Score=79.00  Aligned_cols=246  Identities=17%  Similarity=0.169  Sum_probs=140.2

Q ss_pred             CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee--
Q 008927          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--  241 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~--  241 (548)
                      ++.||++++++..++...+....  ......-+.|+|++++|+.+.+..++    ..-.-|.||-+.|.   .+.|..  
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~--~~~nptyl~~~~~~~~LY~v~~~~~~----ggvaay~iD~~~G~---Lt~ln~~~   85 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVA--ELGNPTYLAVNPDQRHLYVVNEPGEE----GGVAAYRIDPDDGR---LTFLNRQT   85 (346)
T ss_pred             CCceEEEEEeCcccccchhhhcc--ccCCCceEEECCCCCEEEEEEecCCc----CcEEEEEEcCCCCe---EEEeeccc
Confidence            56787777764223322211110  01233456799999988776554321    23456788877787   555532  


Q ss_pred             --cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEE-E--cCCCCC-ccc--CCcCceECcCCc
Q 008927          242 --GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-V--AGFDPT-IVE--SPTEPKWSSKGE  313 (548)
Q Consensus       242 --~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~-l--~~~~~~-~~~--~~~~~~wspDG~  313 (548)
                        +.. -...++++||+.|+ ++.-+      ...|-+..+..+|.+..... +  .+..+. +.+  .+....++|||+
T Consensus        86 ~~g~~-p~yvsvd~~g~~vf-~AnY~------~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~  157 (346)
T COG2706          86 LPGSP-PCYVSVDEDGRFVF-VANYH------SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR  157 (346)
T ss_pred             cCCCC-CeEEEECCCCCEEE-EEEcc------CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC
Confidence              222 14457999999765 55322      46788888876776543322 1  111000 001  145567899999


Q ss_pred             EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce
Q 008927          314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (548)
Q Consensus       314 L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~  393 (548)
                      ++++.|.  |...++.++++.|+.+...+...   .|  -.|.+...|-|   +++..|+..+-++.-.++-+|...|+.
T Consensus       158 ~l~v~DL--G~Dri~~y~~~dg~L~~~~~~~v---~~--G~GPRHi~FHp---n~k~aY~v~EL~stV~v~~y~~~~g~~  227 (346)
T COG2706         158 YLVVPDL--GTDRIFLYDLDDGKLTPADPAEV---KP--GAGPRHIVFHP---NGKYAYLVNELNSTVDVLEYNPAVGKF  227 (346)
T ss_pred             EEEEeec--CCceEEEEEcccCcccccccccc---CC--CCCcceEEEcC---CCcEEEEEeccCCEEEEEEEcCCCceE
Confidence            8888887  44456666666777655442211   01  12334456654   677777666677888888888877887


Q ss_pred             Eeec----CC--Cce---eEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 008927          394 SLLD----IP--FTD---IDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLK  437 (548)
Q Consensus       394 ~~l~----~~--~~~---~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~  437 (548)
                      +.|.    .|  |..   ...+  ++||+.||+. +.....=.+|.+|..++++.
T Consensus       228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas-NRg~dsI~~f~V~~~~g~L~  281 (346)
T COG2706         228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS-NRGHDSIAVFSVDPDGGKLE  281 (346)
T ss_pred             EEeeeeccCccccCCCCceeEEEECCCCCEEEEe-cCCCCeEEEEEEcCCCCEEE
Confidence            7664    23  322   2223  6777766543 33333335567777777653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.70  E-value=1.8e-05  Score=83.48  Aligned_cols=256  Identities=11%  Similarity=0.052  Sum_probs=144.8

Q ss_pred             EECCEEEEEeCCC----CeEEEEeCCCCCCCc-eecCCC---CCCC-CceecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 008927          152 IFGDTVIFSNYKD----QRLYKHSIDSKDSSP-LPITPD---YGEP-LVSYADGIFDPRFNRYVTVREDRRQDALNSTTE  222 (548)
Q Consensus       152 ~~~~~i~F~~~~~----~~Ly~~~~~~~~~~~-~~lT~~---~~~~-~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~  222 (548)
                      ..|+..+|.....    ..+|+.......++. +.|...   .++. ......+.+||||++|+|.....+.    ....
T Consensus        76 ~~g~~~y~~~~~~~~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~----e~~~  151 (414)
T PF02897_consen   76 RRGGYYYYSRNQGGKNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGS----EWYT  151 (414)
T ss_dssp             EETTEEEEEEE-SS-SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTS----SEEE
T ss_pred             EECCeEEEEEEcCCCceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCC----ceEE
Confidence            4577777764332    257777766100332 333221   0011 1233467899999999997554332    3678


Q ss_pred             EEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCC---CCCCceEEEEEecCCCceeeeEEEcCCCCCc
Q 008927          223 IVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM---PWDKAELWVGYISENGDVYKRVCVAGFDPTI  299 (548)
Q Consensus       223 l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~---p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~  299 (548)
                      |+++|+++|+.  ......... .....|++||+.++|..++....   .-...+||...+.. +. .+..++...... 
T Consensus       152 l~v~Dl~tg~~--l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt-~~-~~d~lvfe~~~~-  225 (414)
T PF02897_consen  152 LRVFDLETGKF--LPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGT-PQ-SEDELVFEEPDE-  225 (414)
T ss_dssp             EEEEETTTTEE--EEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS--G-GG-EEEEC-TTC-
T ss_pred             EEEEECCCCcC--cCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCC-Ch-HhCeeEEeecCC-
Confidence            99999999961  111112221 22379999999999998765432   00145799998864 22 222344443211 


Q ss_pred             ccC-CcCceECcCCc-EEEEEeCCCCeeeEEEEeccCC-----eeEeecccccccCCCcccccCcceeeeeecCCCCEEE
Q 008927          300 VES-PTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN-----EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIA  372 (548)
Q Consensus       300 ~~~-~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g-----~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~  372 (548)
                       .. .....+++||+ |++.+..+.....+|.+++..+     +.+.|.+....    .      .+....   .++.++
T Consensus       226 -~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~----~------~~~v~~---~~~~~y  291 (414)
T PF02897_consen  226 -PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG----V------EYYVDH---HGDRLY  291 (414)
T ss_dssp             -TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-----------EEEEEE---ETTEEE
T ss_pred             -CcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc----e------EEEEEc---cCCEEE
Confidence             11 33567899999 5544554222478999998775     45666532110    0      011111   467788


Q ss_pred             EEEEeC-CeEEEEEEECCCCc---eE-eecCCC--ceeEeeeecCCEEEEEEecCCCCCeEEEEEcC
Q 008927          373 CSYRQN-GRSYLGILDDFGHS---LS-LLDIPF--TDIDNITLGNDCLFVEGASGVEPSSVAKVTLD  432 (548)
Q Consensus       373 ~~~~~~-g~~~L~~~dl~~g~---~~-~l~~~~--~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~  432 (548)
                      +..+.+ ....|+.++++...   ++ .|..+.  ..+..+...+++|++.... +....|.++++.
T Consensus       292 i~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~-~~~~~l~v~~~~  357 (414)
T PF02897_consen  292 ILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRE-NGSSRLRVYDLD  357 (414)
T ss_dssp             EEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEE-TTEEEEEEEETT
T ss_pred             EeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEE-CCccEEEEEECC
Confidence            777754 46789999998765   33 333322  2466677778888776654 456789999987

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.70  E-value=3.9e-05  Score=78.19  Aligned_cols=219  Identities=11%  Similarity=0.077  Sum_probs=114.3

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      .+.++++.|+-.+..++.|.+++++.+ +.. +.+.....  ........++|||+.++.. ...       .+.|+++|
T Consensus        86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~-g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~-~~~-------~~~v~v~d  154 (330)
T PRK11028         86 STDHQGRFLFSASYNANCVSVSPLDKD-GIPVAPIQIIEG--LEGCHSANIDPDNRTLWVP-CLK-------EDRIRLFT  154 (330)
T ss_pred             EECCCCCEEEEEEcCCCeEEEEEECCC-CCCCCceeeccC--CCcccEeEeCCCCCEEEEe-eCC-------CCEEEEEE
Confidence            455667777666666777877777532 222 11111100  0112334689999987554 322       24688888


Q ss_pred             CCC-CCccC----cEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC-CCceeeeEEEcCCCCCc--
Q 008927          228 LNG-QNIQE----PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPTI--  299 (548)
Q Consensus       228 l~~-g~~~~----~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~-~g~~~~~~~l~~~~~~~--  299 (548)
                      +++ +....    ...+..+. .-....|+|||++|+ +...      ....|.+++++. .++++....+...+...  
T Consensus       155 ~~~~g~l~~~~~~~~~~~~g~-~p~~~~~~pdg~~ly-v~~~------~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~  226 (330)
T PRK11028        155 LSDDGHLVAQEPAEVTTVEGA-GPRHMVFHPNQQYAY-CVNE------LNSSVDVWQLKDPHGEIECVQTLDMMPADFSD  226 (330)
T ss_pred             ECCCCcccccCCCceecCCCC-CCceEEECCCCCEEE-EEec------CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence            875 32100    01111122 123458999999775 5422      246788888873 23332222221111000  


Q ss_pred             ccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC
Q 008927          300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (548)
Q Consensus       300 ~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g  379 (548)
                      ........++|||+.+|++++..+...+|.++.+++..+.+.....  +.     ....+.+.|   ++++|+.+...++
T Consensus       227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~-----~p~~~~~~~---dg~~l~va~~~~~  296 (330)
T PRK11028        227 TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ET-----QPRGFNIDH---SGKYLIAAGQKSH  296 (330)
T ss_pred             CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cc-----cCCceEECC---CCCEEEEEEccCC
Confidence            0112236689999966677765666667776654444332211000  10     112245554   7788876654466


Q ss_pred             eEEEEEEECCCCceEee
Q 008927          380 RSYLGILDDFGHSLSLL  396 (548)
Q Consensus       380 ~~~L~~~dl~~g~~~~l  396 (548)
                      .-.++.+|.++|.++.+
T Consensus       297 ~v~v~~~~~~~g~l~~~  313 (330)
T PRK11028        297 HISVYEIDGETGLLTEL  313 (330)
T ss_pred             cEEEEEEcCCCCcEEEc
Confidence            67777777777766554

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.68  E-value=1.2e-05  Score=82.60  Aligned_cols=260  Identities=14%  Similarity=0.103  Sum_probs=130.0

Q ss_pred             EECCEEEEEeCC---CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          152 IFGDTVIFSNYK---DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       152 ~~~~~i~F~~~~---~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      ++++.||-.+..   .+.|..+.++.+.+..+.+..... ....-....++|||+.|+.. .-..       ..+.++++
T Consensus        46 ~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~i~~~~~g~~l~va-ny~~-------g~v~v~~l  116 (345)
T PF10282_consen   46 PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCHIAVDPDGRFLYVA-NYGG-------GSVSVFPL  116 (345)
T ss_dssp             TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEEEEECTTSSEEEEE-ETTT-------TEEEEEEE
T ss_pred             eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCCcEEEEEecCCCEEEEE-EccC-------CeEEEEEc
Confidence            355566666653   456655554431134444322100 01112245689999986553 3321       35666666


Q ss_pred             CC-CCccCcEEeee----cC-------CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCC-ceeeeEEEcCC
Q 008927          229 NG-QNIQEPKVLVS----GS-------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG-DVYKRVCVAGF  295 (548)
Q Consensus       229 ~~-g~~~~~~~L~~----~~-------~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g-~~~~~~~l~~~  295 (548)
                      +. |.......+..    ++       ...-...++|||++|+ +. +.     ....|++++++..+ ++.....+.-.
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~-v~-dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~  189 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY-VP-DL-----GADRVYVYDIDDDTGKLTPVDSIKVP  189 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE-EE-ET-----TTTEEEEEEE-TTS-TEEEEEEEECS
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE-EE-ec-----CCCEEEEEEEeCCCceEEEeeccccc
Confidence            54 44111111211    11       1122457899999885 54 22     24589999997533 24332222211


Q ss_pred             CCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecc---cccccCCCcccccCcceeeeeecCCCCEE
Q 008927          296 DPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFGINSYEIIQSHGEKNLI  371 (548)
Q Consensus       296 ~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~---~~~d~~~p~w~~~~~~~~~~~~~~d~~~l  371 (548)
                      . +  .......|+|||+ +|++.+. ++.-.+|.++..+++.+.+..   .........   ......++|   |++.|
T Consensus       190 ~-G--~GPRh~~f~pdg~~~Yv~~e~-s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~i~isp---dg~~l  259 (345)
T PF10282_consen  190 P-G--SGPRHLAFSPDGKYAYVVNEL-SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN---APAEIAISP---DGRFL  259 (345)
T ss_dssp             T-T--SSEEEEEE-TTSSEEEEEETT-TTEEEEEEEETTTTEEEEEEEEESCETTSCSSS---SEEEEEE-T---TSSEE
T ss_pred             c-C--CCCcEEEEcCCcCEEEEecCC-CCcEEEEeecccCCceeEEEEeeeccccccccC---CceeEEEec---CCCEE
Confidence            1 1  3345688999999 5555554 666667777655676544321   111111111   112344554   77777


Q ss_pred             EEEEEeCCeEEEEEEECCCCceEeecC---CCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCceee
Q 008927          372 ACSYRQNGRSYLGILDDFGHSLSLLDI---PFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKA  438 (548)
Q Consensus       372 ~~~~~~~g~~~L~~~dl~~g~~~~l~~---~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~  438 (548)
                      |++......-.++.+|.++|+++.+..   ....-..+  +++++.|++.. .....-.+|.+|.++|.++.
T Consensus       260 yvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~-~~s~~v~vf~~d~~tG~l~~  330 (345)
T PF10282_consen  260 YVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVAN-QDSNTVSVFDIDPDTGKLTP  330 (345)
T ss_dssp             EEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEE-TTTTEEEEEEEETTTTEEEE
T ss_pred             EEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEe-cCCCeEEEEEEeCCCCcEEE
Confidence            765433344556666667788776542   11112233  67888776544 33334566677877887643

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.68  E-value=6.3e-05  Score=76.23  Aligned_cols=253  Identities=11%  Similarity=0.035  Sum_probs=129.5

Q ss_pred             eeEEECCEEEEEeC---------CCCeEEEEeCCCCCCCc-eecCCCCCCCC----ceecceeeCCCCCEEEEEEeccCC
Q 008927          149 AFRIFGDTVIFSNY---------KDQRLYKHSIDSKDSSP-LPITPDYGEPL----VSYADGIFDPRFNRYVTVREDRRQ  214 (548)
Q Consensus       149 ~~~~~~~~i~F~~~---------~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~----~~~~~~~~SpDG~~i~~v~~~~~~  214 (548)
                      ..++|++.||-.+.         ++..|-++|+.+  .++ ..|.... .+.    ..-..+.+||||++|+...++   
T Consensus        52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t--~~~~~~i~~p~-~p~~~~~~~~~~~~ls~dgk~l~V~n~~---  125 (352)
T TIGR02658        52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT--HLPIADIELPE-GPRFLVGTYPWMTSLTPDNKTLLFYQFS---  125 (352)
T ss_pred             eECCCCCEEEEEeccccccccCCCCCEEEEEECcc--CcEEeEEccCC-CchhhccCccceEEECCCCCEEEEecCC---
Confidence            47788888777765         566888899887  433 3333211 011    112257899999987654333   


Q ss_pred             CCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceee-eEEE-
Q 008927          215 DALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCV-  292 (548)
Q Consensus       215 ~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~-~~~l-  292 (548)
                          ..+.+-++|+++++.  ...+.- ++...-...+.++..+.+ .         ...+..+.++.+|+... ...+ 
T Consensus       126 ----p~~~V~VvD~~~~kv--v~ei~v-p~~~~vy~t~e~~~~~~~-~---------Dg~~~~v~~d~~g~~~~~~~~vf  188 (352)
T TIGR02658       126 ----PSPAVGVVDLEGKAF--VRMMDV-PDCYHIFPTANDTFFMHC-R---------DGSLAKVGYGTKGNPKIKPTEVF  188 (352)
T ss_pred             ----CCCEEEEEECCCCcE--EEEEeC-CCCcEEEEecCCccEEEe-e---------cCceEEEEecCCCceEEeeeeee
Confidence                136799999999872  112221 111111112222211110 0         11222223333333111 1112 


Q ss_pred             cCCCCCcccCCcCceECc-CCcEEEEEeCCCCeeeEEEEeccCCeeEeeccc---ccccCCCcccccCc-ceeeeeecCC
Q 008927          293 AGFDPTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL---DAEFSRPLWVFGIN-SYEIIQSHGE  367 (548)
Q Consensus       293 ~~~~~~~~~~~~~~~wsp-DG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~---~~d~~~p~w~~~~~-~~~~~~~~~d  367 (548)
                      .+.+ .  .-...|.+++ ||+.+|++..    ..|+.+|+.+.+...+.+-   ........|.++.. ...+.+   +
T Consensus       189 ~~~~-~--~v~~rP~~~~~dg~~~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~---d  258 (352)
T TIGR02658       189 HPED-E--YLINHPAYSNKSGRLVWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR---A  258 (352)
T ss_pred             cCCc-c--ccccCCceEcCCCcEEEEecC----CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC---C
Confidence            1211 1  1224455566 8888888765    4799999766544332210   00111124555441 234443   7


Q ss_pred             CCEEEEEEEe-------CCeEEEEEEECCCCceE-eecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          368 KNLIACSYRQ-------NGRSYLGILDDFGHSLS-LLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       368 ~~~l~~~~~~-------~g~~~L~~~dl~~g~~~-~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      ++++|+....       ++-.+++++|.+++++. .+..+..... .+++|++-++++.+.  ....|.++|..+++.
T Consensus       259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~--~s~~VsViD~~t~k~  334 (352)
T TIGR02658       259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST--GDKTLYIFDAETGKE  334 (352)
T ss_pred             CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC--CCCcEEEEECcCCeE
Confidence            8888875431       23368999999988754 4444322111 247888844454442  245688999887753

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.55  E-value=1e-05  Score=81.16  Aligned_cols=199  Identities=12%  Similarity=0.121  Sum_probs=120.6

Q ss_pred             ccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCc-ccCC---CCCCccccceeeCCeeeEEECCEEEEEeCCCC
Q 008927           90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPS-DITP---KEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ  165 (548)
Q Consensus        90 ~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~-~lt~---~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~  165 (548)
                      .|..+++.|+..+.-+.+.   +|+..|+.++-    +.. .|+.   ..+.++.       ..|.+.|...+|++.+..
T Consensus       215 ~I~sv~FHp~~plllvaG~---d~~lrifqvDG----k~N~~lqS~~l~~fPi~~-------a~f~p~G~~~i~~s~rrk  280 (514)
T KOG2055|consen  215 GITSVQFHPTAPLLLVAGL---DGTLRIFQVDG----KVNPKLQSIHLEKFPIQK-------AEFAPNGHSVIFTSGRRK  280 (514)
T ss_pred             CceEEEecCCCceEEEecC---CCcEEEEEecC----ccChhheeeeeccCccce-------eeecCCCceEEEecccce
Confidence            4555666665556555543   46777887742    222 2222   2333332       257788887888887778


Q ss_pred             eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCc
Q 008927          166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF  245 (548)
Q Consensus       166 ~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~  245 (548)
                      -+|.+|+..  .+..+|.+..+-..-.+..+..|||++.|++. ..        ...|+++...+++   ..--..-.+.
T Consensus       281 y~ysyDle~--ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~-G~--------~G~I~lLhakT~e---li~s~KieG~  346 (514)
T KOG2055|consen  281 YLYSYDLET--AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIA-GN--------NGHIHLLHAKTKE---LITSFKIEGV  346 (514)
T ss_pred             EEEEeeccc--cccccccCCCCcccchhheeEecCCCCeEEEc-cc--------CceEEeehhhhhh---hhheeeeccE
Confidence            899999987  66666655321011234567899999988774 22        2589999888876   2111223445


Q ss_pred             eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCee
Q 008927          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW  325 (548)
Q Consensus       246 ~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~  325 (548)
                      +....||.||+.|. ++-       ...++|+.++... .. ..+-...+.    ..-..+.-|++|+++.+... .|.-
T Consensus       347 v~~~~fsSdsk~l~-~~~-------~~GeV~v~nl~~~-~~-~~rf~D~G~----v~gts~~~S~ng~ylA~GS~-~GiV  411 (514)
T KOG2055|consen  347 VSDFTFSSDSKELL-ASG-------GTGEVYVWNLRQN-SC-LHRFVDDGS----VHGTSLCISLNGSYLATGSD-SGIV  411 (514)
T ss_pred             EeeEEEecCCcEEE-EEc-------CCceEEEEecCCc-ce-EEEEeecCc----cceeeeeecCCCceEEeccC-cceE
Confidence            77889999998775 441       2358999999743 21 112222211    22345666889984444333 6999


Q ss_pred             eEEEEe
Q 008927          326 NLHKWI  331 (548)
Q Consensus       326 ~Ly~~d  331 (548)
                      +||-.+
T Consensus       412 NIYd~~  417 (514)
T KOG2055|consen  412 NIYDGN  417 (514)
T ss_pred             EEeccc
Confidence            998754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.47  E-value=5.6e-05  Score=73.64  Aligned_cols=210  Identities=15%  Similarity=0.178  Sum_probs=118.2

Q ss_pred             ceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEEEEe
Q 008927           93 GTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS  171 (548)
Q Consensus        93 ~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~~~  171 (548)
                      .|.+.+ .+.+||+...     ...|++++..+  ....+...+-    +    .|-.+...++.|++...  ..+.+++
T Consensus         4 gp~~d~~~g~l~~~D~~-----~~~i~~~~~~~--~~~~~~~~~~----~----~G~~~~~~~g~l~v~~~--~~~~~~d   66 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIP-----GGRIYRVDPDT--GEVEVIDLPG----P----NGMAFDRPDGRLYVADS--GGIAVVD   66 (246)
T ss_dssp             EEEEETTTTEEEEEETT-----TTEEEEEETTT--TEEEEEESSS----E----EEEEEECTTSEEEEEET--TCEEEEE
T ss_pred             ceEEECCCCEEEEEEcC-----CCEEEEEECCC--CeEEEEecCC----C----ceEEEEccCCEEEEEEc--CceEEEe
Confidence            578888 8999999743     23577776652  2332221110    1    11122223567888773  4466668


Q ss_pred             CCCCCCCceecCCCC-CC-CCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeee
Q 008927          172 IDSKDSSPLPITPDY-GE-PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFP  249 (548)
Q Consensus       172 ~~~~~~~~~~lT~~~-~~-~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p  249 (548)
                      +.+  ++.+.+.... .. ...+..+..++|||+ |++...............||+++.+ ++   .+.+..+-..-...
T Consensus        67 ~~~--g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~---~~~~~~~~~~pNGi  139 (246)
T PF08450_consen   67 PDT--GKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK---VTVVADGLGFPNGI  139 (246)
T ss_dssp             TTT--TEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE---EEEEEEEESSEEEE
T ss_pred             cCC--CcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce---EEEEecCcccccce
Confidence            876  6555554321 11 235677899999998 5554332211111111789999999 66   66666554444567


Q ss_pred             EECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc-eeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEE
Q 008927          250 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH  328 (548)
Q Consensus       250 ~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~-~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly  328 (548)
                      .|||||+.|++.. .      ....||.++++.++. +...+.+...... ....-......+|.||+..-. .  ..|+
T Consensus       140 ~~s~dg~~lyv~d-s------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~~G~l~va~~~-~--~~I~  208 (246)
T PF08450_consen  140 AFSPDGKTLYVAD-S------FNGRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDSDGNLWVADWG-G--GRIV  208 (246)
T ss_dssp             EEETTSSEEEEEE-T------TTTEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBTTS-EEEEEET-T--TEEE
T ss_pred             EECCcchheeecc-c------ccceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcCCCCEEEEEcC-C--CEEE
Confidence            8999999886543 2      246799999975443 4444444322100 011334678888876655332 2  4788


Q ss_pred             EEeccCCeeE
Q 008927          329 KWIESNNEVL  338 (548)
Q Consensus       329 ~~d~~~g~~~  338 (548)
                      +++++ |+..
T Consensus       209 ~~~p~-G~~~  217 (246)
T PF08450_consen  209 VFDPD-GKLL  217 (246)
T ss_dssp             EEETT-SCEE
T ss_pred             EECCC-ccEE
Confidence            99987 5543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.46  E-value=1.1e-05  Score=75.42  Aligned_cols=138  Identities=13%  Similarity=0.136  Sum_probs=81.7

Q ss_pred             eeEEECCEEEEEeCC-----------CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCC
Q 008927          149 AFRIFGDTVIFSNYK-----------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDAL  217 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~-----------~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~  217 (548)
                      .|.++|+.|+..-..           ...||.++..+  .....+.-..   ...+.++.|+|+|+.++.+....+    
T Consensus        12 ~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~--~~~~~i~l~~---~~~I~~~~WsP~g~~favi~g~~~----   82 (194)
T PF08662_consen   12 HWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN--IPVESIELKK---EGPIHDVAWSPNGNEFAVIYGSMP----   82 (194)
T ss_pred             EecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC--CccceeeccC---CCceEEEEECcCCCEEEEEEccCC----
Confidence            467777776665331           13788887765  4444443321   123788999999999877643221    


Q ss_pred             CceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCC
Q 008927          218 NSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP  297 (548)
Q Consensus       218 ~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~  297 (548)
                         ..+-..|+++..   ...+  +........|||+|+.|+.....  +   ...+|.+.|++. .+    .+..... 
T Consensus        83 ---~~v~lyd~~~~~---i~~~--~~~~~n~i~wsP~G~~l~~~g~~--n---~~G~l~~wd~~~-~~----~i~~~~~-  143 (194)
T PF08662_consen   83 ---AKVTLYDVKGKK---IFSF--GTQPRNTISWSPDGRFLVLAGFG--N---LNGDLEFWDVRK-KK----KISTFEH-  143 (194)
T ss_pred             ---cccEEEcCcccE---eEee--cCCCceEEEECCCCCEEEEEEcc--C---CCcEEEEEECCC-CE----Eeecccc-
Confidence               245566665332   2222  22333456899999999865532  1   135788889873 32    1112111 


Q ss_pred             CcccCCcCceECcCCc-EEEE
Q 008927          298 TIVESPTEPKWSSKGE-LFFV  317 (548)
Q Consensus       298 ~~~~~~~~~~wspDG~-L~~~  317 (548)
                         .......|||||+ ++..
T Consensus       144 ---~~~t~~~WsPdGr~~~ta  161 (194)
T PF08662_consen  144 ---SDATDVEWSPDGRYLATA  161 (194)
T ss_pred             ---CcEEEEEEcCCCCEEEEE
Confidence               3456789999999 5544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.45  E-value=7.3e-05  Score=72.79  Aligned_cols=224  Identities=15%  Similarity=0.146  Sum_probs=118.7

Q ss_pred             eeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeC-CCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFD-PRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~S-pDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      ..|.+..+.|+|++-..++||++++++  ++.+.+...    .  .....+. +||. |++. ...         .+.++
T Consensus         5 p~~d~~~g~l~~~D~~~~~i~~~~~~~--~~~~~~~~~----~--~~G~~~~~~~g~-l~v~-~~~---------~~~~~   65 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDIPGGRIYRVDPDT--GEVEVIDLP----G--PNGMAFDRPDGR-LYVA-DSG---------GIAVV   65 (246)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTT--TEEEEEESS----S--EEEEEEECTTSE-EEEE-ETT---------CEEEE
T ss_pred             eEEECCCCEEEEEEcCCCEEEEEECCC--CeEEEEecC----C--CceEEEEccCCE-EEEE-EcC---------ceEEE
Confidence            455555789999998889999999987  544444332    1  2334455 6654 3332 321         34556


Q ss_pred             ECCCCCccCcEEeeec---C-C--ceeeeEECCCCCEEEEEEecCCCCCCCC--ceEEEEEecCCCceeeeEEEcCCCCC
Q 008927          227 ALNGQNIQEPKVLVSG---S-D--FYAFPRMDPRGERMAWIEWHHPNMPWDK--AELWVGYISENGDVYKRVCVAGFDPT  298 (548)
Q Consensus       227 dl~~g~~~~~~~L~~~---~-~--~~~~p~~SPDGk~La~~~~~~~~~p~~~--~~L~v~~~~~~g~~~~~~~l~~~~~~  298 (548)
                      |+.+++   .+.+...   . .  ......++|||+ |.+.. .........  ..||.++.+  +++   ..+...-  
T Consensus        66 d~~~g~---~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~-~~~~~~~~~~~g~v~~~~~~--~~~---~~~~~~~--  133 (246)
T PF08450_consen   66 DPDTGK---VTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTD-SGGGGASGIDPGSVYRIDPD--GKV---TVVADGL--  133 (246)
T ss_dssp             ETTTTE---EEEEEEEETTCSCTEEEEEEEE-TTS--EEEEE-ECCBCTTCGGSEEEEEEETT--SEE---EEEEEEE--
T ss_pred             ecCCCc---EEEEeeccCCCcccCCCceEEEcCCCC-EEEEe-cCCCccccccccceEEECCC--CeE---EEEecCc--
Confidence            999987   6666543   1 1  234668999998 54443 222111112  578888875  432   2222211  


Q ss_pred             cccCCcCceECcCCcEEEEEeCCCCeeeEEEEecc--CCee--Ee-ecccccccCCCcccccCcceeeeeecCCCCEEEE
Q 008927          299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES--NNEV--LA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIAC  373 (548)
Q Consensus       299 ~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~--~g~~--~~-l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~  373 (548)
                        .....+.|+|||+.+|++|...  ..|++++++  ++++  +. +.......+.|      ..+...    ..+.|++
T Consensus       134 --~~pNGi~~s~dg~~lyv~ds~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~p------DG~~vD----~~G~l~v  199 (246)
T PF08450_consen  134 --GFPNGIAFSPDGKTLYVADSFN--GRIWRFDLDADGGELSNRRVFIDFPGGPGYP------DGLAVD----SDGNLWV  199 (246)
T ss_dssp             --SSEEEEEEETTSSEEEEEETTT--TEEEEEEEETTTCCEEEEEEEEE-SSSSCEE------EEEEEB----TTS-EEE
T ss_pred             --ccccceEECCcchheeeccccc--ceeEEEeccccccceeeeeeEEEcCCCCcCC------CcceEc----CCCCEEE
Confidence              2345689999999555555423  358888774  3322  12 21111111111      113342    2345655


Q ss_pred             EEEeCCeEEEEEEECCCCceEeecCCCceeEee---eecCCEEEEEEe
Q 008927          374 SYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI---TLGNDCLFVEGA  418 (548)
Q Consensus       374 ~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~~~---s~d~~~l~~~~s  418 (548)
                      ...  +...|+++|.++..+..+..+......+   -++.+.||++.+
T Consensus       200 a~~--~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  200 ADW--GGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             EEE--TTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             EEc--CCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence            433  3457889998844455666663344433   245577776653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.43  E-value=0.00025  Score=68.66  Aligned_cols=243  Identities=13%  Similarity=0.105  Sum_probs=132.4

Q ss_pred             CCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCe
Q 008927           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR  166 (548)
Q Consensus        88 ~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~  166 (548)
                      ...+..+.++| ++.++...    ++|...+|.....  .....+......+       ....|.++++.|+... .++.
T Consensus         9 ~~~i~~~~~~~~~~~l~~~~----~~g~i~i~~~~~~--~~~~~~~~~~~~i-------~~~~~~~~~~~l~~~~-~~~~   74 (289)
T cd00200           9 TGGVTCVAFSPDGKLLATGS----GDGTIKVWDLETG--ELLRTLKGHTGPV-------RDVAASADGTYLASGS-SDKT   74 (289)
T ss_pred             CCCEEEEEEcCCCCEEEEee----cCcEEEEEEeeCC--CcEEEEecCCcce-------eEEEECCCCCEEEEEc-CCCe
Confidence            35677889998 66665543    2477777766432  1222222221111       1235666665665554 4678


Q ss_pred             EEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCce
Q 008927          167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY  246 (548)
Q Consensus       167 Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~  246 (548)
                      |++.++..+ .....+...    ......+.|+|+++.++.. ..        ...|..+|+.+++.  ...+.......
T Consensus        75 i~i~~~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~~~~~-~~--------~~~i~~~~~~~~~~--~~~~~~~~~~i  138 (289)
T cd00200          75 IRLWDLETG-ECVRTLTGH----TSYVSSVAFSPDGRILSSS-SR--------DKTIKVWDVETGKC--LTTLRGHTDWV  138 (289)
T ss_pred             EEEEEcCcc-cceEEEecc----CCcEEEEEEcCCCCEEEEe-cC--------CCeEEEEECCCcEE--EEEeccCCCcE
Confidence            888888752 233444432    1245667899997655443 31        14688889886651  22333233446


Q ss_pred             eeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCee
Q 008927          247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW  325 (548)
Q Consensus       247 ~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~  325 (548)
                      ....|+|+++.|+...        ....|++.++.. ++.  ...+....    ..+..+.|+|+++ +++.+.  .+  
T Consensus       139 ~~~~~~~~~~~l~~~~--------~~~~i~i~d~~~-~~~--~~~~~~~~----~~i~~~~~~~~~~~l~~~~~--~~--  199 (289)
T cd00200         139 NSVAFSPDGTFVASSS--------QDGTIKLWDLRT-GKC--VATLTGHT----GEVNSVAFSPDGEKLLSSSS--DG--  199 (289)
T ss_pred             EEEEEcCcCCEEEEEc--------CCCcEEEEEccc-ccc--ceeEecCc----cccceEEECCCcCEEEEecC--CC--
Confidence            7788999988665332        134688888873 331  22333322    4577899999998 555443  33  


Q ss_pred             eEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce
Q 008927          326 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (548)
Q Consensus       326 ~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~  393 (548)
                      .|..++...++.......     ...   ......+.+   + +.+++....++  .|+++|+.+++.
T Consensus       200 ~i~i~d~~~~~~~~~~~~-----~~~---~i~~~~~~~---~-~~~~~~~~~~~--~i~i~~~~~~~~  253 (289)
T cd00200         200 TIKLWDLSTGKCLGTLRG-----HEN---GVNSVAFSP---D-GYLLASGSEDG--TIRVWDLRTGEC  253 (289)
T ss_pred             cEEEEECCCCceecchhh-----cCC---ceEEEEEcC---C-CcEEEEEcCCC--cEEEEEcCCcee
Confidence            466777766554332211     000   111234542   3 45555554344  466667765543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.37  E-value=0.00036  Score=71.42  Aligned_cols=199  Identities=15%  Similarity=0.184  Sum_probs=101.1

Q ss_pred             cC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEEEEeCCCC
Q 008927           97 DG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSK  175 (548)
Q Consensus        97 sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~~~~~~~  175 (548)
                      +| |++|.|-      .|++++.+.-... ......|...  ....|     ..|+|.|-+|+=- +..+.|-+-+... 
T Consensus        27 dpkgd~ilY~------nGksv~ir~i~~~-~~~~iYtEH~--~~vtV-----AkySPsG~yiASG-D~sG~vRIWdtt~-   90 (603)
T KOG0318|consen   27 DPKGDNILYT------NGKSVIIRNIDNP-ASVDIYTEHA--HQVTV-----AKYSPSGFYIASG-DVSGKVRIWDTTQ-   90 (603)
T ss_pred             CCCCCeEEEe------CCCEEEEEECCCc-cceeeecccc--ceeEE-----EEeCCCceEEeec-CCcCcEEEEeccC-
Confidence            56 8888885      4888777653221 1233333321  11222     2466665433322 2234332224332 


Q ss_pred             CCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE-------------------CCCCCccCc
Q 008927          176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA-------------------LNGQNIQEP  236 (548)
Q Consensus       176 ~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id-------------------l~~g~~~~~  236 (548)
                        +...|-........++.|+.|+.|+++|+.+-|.++     +..+.+.+|                   +.-..  +.
T Consensus        91 --~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGre-----rfg~~F~~DSG~SvGei~GhSr~ins~~~KpsR--Pf  161 (603)
T KOG0318|consen   91 --KEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRE-----RFGHVFLWDSGNSVGEITGHSRRINSVDFKPSR--PF  161 (603)
T ss_pred             --cceeeeeeeeecccccccceeCCCCcEEEEEecCcc-----ceeEEEEecCCCccceeeccceeEeeeeccCCC--ce
Confidence              111121110001246789999999999999866542     223333333                   33222  12


Q ss_pred             EEeeecC----------------------CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcC
Q 008927          237 KVLVSGS----------------------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG  294 (548)
Q Consensus       237 ~~L~~~~----------------------~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~  294 (548)
                      |.++.+.                      .|+...++||||++++=+..        ..+++++|=.. |+  ..-.+.+
T Consensus       162 Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs--------Dgki~iyDGkt-ge--~vg~l~~  230 (603)
T KOG0318|consen  162 RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS--------DGKIYIYDGKT-GE--KVGELED  230 (603)
T ss_pred             EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC--------CccEEEEcCCC-cc--EEEEecC
Confidence            3333222                      23345589999998774442        35789998653 43  1223442


Q ss_pred             CCCCcccCCcCceECcCCc-EEEEE-eCCCCeeeEEEEeccCCee
Q 008927          295 FDPTIVESPTEPKWSSKGE-LFFVT-DRKNGFWNLHKWIESNNEV  337 (548)
Q Consensus       295 ~~~~~~~~~~~~~wspDG~-L~~~s-d~~~g~~~Ly~~d~~~g~~  337 (548)
                      .+ ....++..+.|+||++ ++-++ |.     .+-.+|.+++++
T Consensus       231 ~~-aHkGsIfalsWsPDs~~~~T~SaDk-----t~KIWdVs~~sl  269 (603)
T KOG0318|consen  231 SD-AHKGSIFALSWSPDSTQFLTVSADK-----TIKIWDVSTNSL  269 (603)
T ss_pred             CC-CccccEEEEEECCCCceEEEecCCc-----eEEEEEeeccce
Confidence            22 1116788999999999 55443 33     233445555554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.35  E-value=0.00063  Score=65.78  Aligned_cols=233  Identities=12%  Similarity=0.129  Sum_probs=130.2

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      .|+++++.|++.. .++.|++.++..  ++. ..+...    ......+.|+|+++.|++...+         ..|+++|
T Consensus        16 ~~~~~~~~l~~~~-~~g~i~i~~~~~--~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~---------~~i~i~~   79 (289)
T cd00200          16 AFSPDGKLLATGS-GDGTIKVWDLET--GELLRTLKGH----TGPVRDVAASADGTYLASGSSD---------KTIRLWD   79 (289)
T ss_pred             EEcCCCCEEEEee-cCcEEEEEEeeC--CCcEEEEecC----CcceeEEEECCCCCEEEEEcCC---------CeEEEEE
Confidence            4666666666654 467787778765  333 334332    1234567899999887775432         4688889


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      +.+++.  ...+...........|+|+++.|+ ...       ....|.+.++.. ++  ....+....    ..+....
T Consensus        80 ~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~-~~~-------~~~~i~~~~~~~-~~--~~~~~~~~~----~~i~~~~  142 (289)
T cd00200          80 LETGEC--VRTLTGHTSYVSSVAFSPDGRILS-SSS-------RDKTIKVWDVET-GK--CLTTLRGHT----DWVNSVA  142 (289)
T ss_pred             cCcccc--eEEEeccCCcEEEEEEcCCCCEEE-Eec-------CCCeEEEEECCC-cE--EEEEeccCC----CcEEEEE
Confidence            887641  344443333566778999977554 442       135788889873 33  123333322    4577889


Q ss_pred             ECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (548)
Q Consensus       308 wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d  387 (548)
                      |+|++++++.... ++  .|+.+|+.+++........   ..     ......+.+   +++.|++... +  ..+.++|
T Consensus       143 ~~~~~~~l~~~~~-~~--~i~i~d~~~~~~~~~~~~~---~~-----~i~~~~~~~---~~~~l~~~~~-~--~~i~i~d  205 (289)
T cd00200         143 FSPDGTFVASSSQ-DG--TIKLWDLRTGKCVATLTGH---TG-----EVNSVAFSP---DGEKLLSSSS-D--GTIKLWD  205 (289)
T ss_pred             EcCcCCEEEEEcC-CC--cEEEEEccccccceeEecC---cc-----ccceEEECC---CcCEEEEecC-C--CcEEEEE
Confidence            9999886655543 33  4677777655543322110   00     111234543   5556665443 3  4567778


Q ss_pred             CCCCceEe-ecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          388 DFGHSLSL-LDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       388 l~~g~~~~-l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      +..++... +......+..+  .++ +.+++.++   ....|++++...++
T Consensus       206 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~---~~~~i~i~~~~~~~  252 (289)
T cd00200         206 LSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGS---EDGTIRVWDLRTGE  252 (289)
T ss_pred             CCCCceecchhhcCCceEEEEEcCC-CcEEEEEc---CCCcEEEEEcCCce
Confidence            77665433 22222234433  344 44544443   23578888876554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.34  E-value=0.00086  Score=68.07  Aligned_cols=103  Identities=8%  Similarity=0.029  Sum_probs=60.8

Q ss_pred             CeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEecc--CCCCCCceeEEEEEECCCCCccCcEEeee
Q 008927          165 QRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDR--RQDALNSTTEIVAIALNGQNIQEPKVLVS  241 (548)
Q Consensus       165 ~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~--~~~~~~~~~~l~~idl~~g~~~~~~~L~~  241 (548)
                      ++|+++|.+.  .+.. .|..+.     + ....+||||+.|+. ++.-  +...++....|-++|+++.+.  ...|..
T Consensus        27 ~~v~ViD~~~--~~v~g~i~~G~-----~-P~~~~spDg~~lyv-a~~~~~R~~~G~~~d~V~v~D~~t~~~--~~~i~~   95 (352)
T TIGR02658        27 TQVYTIDGEA--GRVLGMTDGGF-----L-PNPVVASDGSFFAH-ASTVYSRIARGKRTDYVEVIDPQTHLP--IADIEL   95 (352)
T ss_pred             ceEEEEECCC--CEEEEEEEccC-----C-CceeECCCCCEEEE-EeccccccccCCCCCEEEEEECccCcE--EeEEcc
Confidence            7999999986  4443 333321     2 22249999998654 4330  001112235788999999872  333433


Q ss_pred             cCC-------ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc
Q 008927          242 GSD-------FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD  285 (548)
Q Consensus       242 ~~~-------~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~  285 (548)
                      +.+       .-....+|||||+|+ +..-.|     ...+-++|++. ++
T Consensus        96 p~~p~~~~~~~~~~~~ls~dgk~l~-V~n~~p-----~~~V~VvD~~~-~k  139 (352)
T TIGR02658        96 PEGPRFLVGTYPWMTSLTPDNKTLL-FYQFSP-----SPAVGVVDLEG-KA  139 (352)
T ss_pred             CCCchhhccCccceEEECCCCCEEE-EecCCC-----CCEEEEEECCC-Cc
Confidence            222       113568999999875 542122     46799999985 44

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK10115 protease 2; Provisional

Probab=98.33  E-value=0.00055  Score=76.48  Aligned_cols=218  Identities=11%  Similarity=0.006  Sum_probs=123.1

Q ss_pred             ceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927          191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (548)
Q Consensus       191 ~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~  270 (548)
                      ..+..+.|||||+.|+|.....+    ..+.+|+++|+.+|+.- ...+. +..  ....|++||+.|+|...+ ++. .
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G----~E~~~l~v~d~~tg~~l-~~~i~-~~~--~~~~w~~D~~~~~y~~~~-~~~-~  196 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLS----RRQYGIRFRNLETGNWY-PELLD-NVE--PSFVWANDSWTFYYVRKH-PVT-L  196 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCC----cEEEEEEEEECCCCCCC-Ccccc-Ccc--eEEEEeeCCCEEEEEEec-CCC-C
Confidence            45667889999999999743322    35789999999988610 12222 222  347899999999988753 221 1


Q ss_pred             CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc-CCc-EEEEEeCCCCeeeEEEEe--ccCCeeEeecccccc
Q 008927          271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGE-LFFVTDRKNGFWNLHKWI--ESNNEVLAIYSLDAE  346 (548)
Q Consensus       271 ~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp-DG~-L~~~sd~~~g~~~Ly~~d--~~~g~~~~l~~~~~d  346 (548)
                      ...+||..++.+ +. .+.+++..+. +  ....-..|.+ |++ +++.+.. .....++.++  +.+++.+.+.+...+
T Consensus       197 ~~~~v~~h~lgt-~~-~~d~lv~~e~-~--~~~~~~~~~s~d~~~l~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~  270 (686)
T PRK10115        197 LPYQVWRHTIGT-PA-SQDELVYEEK-D--DTFYVSLHKTTSKHYVVIHLAS-ATTSEVLLLDAELADAEPFVFLPRRKD  270 (686)
T ss_pred             CCCEEEEEECCC-Ch-hHCeEEEeeC-C--CCEEEEEEEcCCCCEEEEEEEC-CccccEEEEECcCCCCCceEEEECCCC
Confidence            236899999974 31 1233343322 1  2122123444 888 5533333 2223455555  334444444322111


Q ss_pred             cCCCcccccCcceeeeeecCCCCEEEEEEEeC-CeEEEEEEECC-CCceEeecCC--CceeEeeeecCCEEEEEEecCCC
Q 008927          347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQN-GRSYLGILDDF-GHSLSLLDIP--FTDIDNITLGNDCLFVEGASGVE  422 (548)
Q Consensus       347 ~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~-g~~~L~~~dl~-~g~~~~l~~~--~~~~~~~s~d~~~l~~~~ss~~~  422 (548)
                      .          .|....   .++.+++..+.+ .+..|+.+++. .++++.|..+  ...+..+...++.+++.... ..
T Consensus       271 ~----------~~~~~~---~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~-~g  336 (686)
T PRK10115        271 H----------EYSLDH---YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQ-RG  336 (686)
T ss_pred             C----------EEEEEe---CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEe-CC
Confidence            0          011211   356777777653 56788888887 4566666544  23566665557777776654 44


Q ss_pred             CCeEEEEEcCCCceee
Q 008927          423 PSSVAKVTLDDHKLKA  438 (548)
Q Consensus       423 p~~l~~~d~~~~~~~~  438 (548)
                      ...|+++++.+++.+.
T Consensus       337 ~~~l~~~~~~~~~~~~  352 (686)
T PRK10115        337 LTSLRQINRKTREVIG  352 (686)
T ss_pred             EEEEEEEcCCCCceEE
Confidence            5568888876555443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.32  E-value=7.9e-05  Score=69.74  Aligned_cols=152  Identities=14%  Similarity=0.128  Sum_probs=88.8

Q ss_pred             ecceeeCCCCCEEEEEEe-ccCCC--CCCceeEEEEEECCCCCccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCC
Q 008927          193 YADGIFDPRFNRYVTVRE-DRRQD--ALNSTTEIVAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNM  268 (548)
Q Consensus       193 ~~~~~~SpDG~~i~~v~~-~~~~~--~~~~~~~l~~idl~~g~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~  268 (548)
                      -..+.|+|+|+.|++... +.+..  .......||.++..+..   ...+.- ..+.+....|||+|+++|.+.-.   +
T Consensus         8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~---~~~i~l~~~~~I~~~~WsP~g~~favi~g~---~   81 (194)
T PF08662_consen    8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP---VESIELKKEGPIHDVAWSPNGNEFAVIYGS---M   81 (194)
T ss_pred             eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc---cceeeccCCCceEEEEECcCCCEEEEEEcc---C
Confidence            456789999999887654 22111  01124689999888776   555532 22237788999999999877522   2


Q ss_pred             CCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccC
Q 008927          269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFS  348 (548)
Q Consensus       269 p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~  348 (548)
                      |   ..+.+.+++  ++  ....+..      .......|||+|+++++...++-...|..+|..+.+.  +...+.   
T Consensus        82 ~---~~v~lyd~~--~~--~i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~--i~~~~~---  143 (194)
T PF08662_consen   82 P---AKVTLYDVK--GK--KIFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK--ISTFEH---  143 (194)
T ss_pred             C---cccEEEcCc--cc--EeEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE--eecccc---
Confidence            2   367777775  32  1222322      2345689999999555554322224577788764433  321111   


Q ss_pred             CCcccccCcceeeeeecCCCCEEEEEEE
Q 008927          349 RPLWVFGINSYEIIQSHGEKNLIACSYR  376 (548)
Q Consensus       349 ~p~w~~~~~~~~~~~~~~d~~~l~~~~~  376 (548)
                           .......|+|   ||+.|+....
T Consensus       144 -----~~~t~~~WsP---dGr~~~ta~t  163 (194)
T PF08662_consen  144 -----SDATDVEWSP---DGRYLATATT  163 (194)
T ss_pred             -----CcEEEEEEcC---CCCEEEEEEe
Confidence                 1123356766   8887775543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.26  E-value=0.00032  Score=72.39  Aligned_cols=252  Identities=12%  Similarity=0.098  Sum_probs=122.2

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      .+++||+.+|..+ +++.|-++|+... ...+.+..+     ..-....+|+||++|+..+..        .+.+.++|.
T Consensus        43 ~~s~Dgr~~yv~~-rdg~vsviD~~~~-~~v~~i~~G-----~~~~~i~~s~DG~~~~v~n~~--------~~~v~v~D~  107 (369)
T PF02239_consen   43 KFSPDGRYLYVAN-RDGTVSVIDLATG-KVVATIKVG-----GNPRGIAVSPDGKYVYVANYE--------PGTVSVIDA  107 (369)
T ss_dssp             E-TT-SSEEEEEE-TTSEEEEEETTSS-SEEEEEE-S-----SEEEEEEE--TTTEEEEEEEE--------TTEEEEEET
T ss_pred             EecCCCCEEEEEc-CCCeEEEEECCcc-cEEEEEecC-----CCcceEEEcCCCCEEEEEecC--------CCceeEecc
Confidence            4567777766654 6889999999862 223455443     234467899999987654332        247999999


Q ss_pred             CCCCccCcEEeeecC-------CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCccc
Q 008927          229 NGQNIQEPKVLVSGS-------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE  301 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~-------~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~  301 (548)
                      ++.+.  .+.+..+.       .....-.-||+....++.. .      +..++|++|......+. .+.+.-+     .
T Consensus       108 ~tle~--v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l-k------d~~~I~vVdy~d~~~~~-~~~i~~g-----~  172 (369)
T PF02239_consen  108 ETLEP--VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL-K------DTGEIWVVDYSDPKNLK-VTTIKVG-----R  172 (369)
T ss_dssp             TT--E--EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE-T------TTTEEEEEETTTSSCEE-EEEEE-------T
T ss_pred             ccccc--eeecccccccccccCCCceeEEecCCCCEEEEEE-c------cCCeEEEEEeccccccc-eeeeccc-----c
Confidence            88762  23332110       1123334567766544333 2      25689999976432221 1222221     3


Q ss_pred             CCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeeccc---c----------------------cc----------
Q 008927          302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL---D----------------------AE----------  346 (548)
Q Consensus       302 ~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~---~----------------------~d----------  346 (548)
                      ......|+|||+.+++....++  .|-.+|.++++...+.+.   .                      ..          
T Consensus       173 ~~~D~~~dpdgry~~va~~~sn--~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~  250 (369)
T PF02239_consen  173 FPHDGGFDPDGRYFLVAANGSN--KIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDP  250 (369)
T ss_dssp             TEEEEEE-TTSSEEEEEEGGGT--EEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--T
T ss_pred             cccccccCcccceeeecccccc--eeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCc
Confidence            4567899999995444322122  455555555443322100   0                      00          


Q ss_pred             ---cCCCccc-------ccCcceeeeeecCCCCEEEEEEE-eCCeEEEEEEECCCCce-EeecCCCc--ee-EeeeecCC
Q 008927          347 ---FSRPLWV-------FGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHSL-SLLDIPFT--DI-DNITLGND  411 (548)
Q Consensus       347 ---~~~p~w~-------~~~~~~~~~~~~~d~~~l~~~~~-~~g~~~L~~~dl~~g~~-~~l~~~~~--~~-~~~s~d~~  411 (548)
                         ...-.|.       .|..-  |...+++++++++... ......|.++|.++-++ ..+....+  .+ -.++.||+
T Consensus       251 v~v~d~~~wkvv~~I~~~G~gl--Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~  328 (369)
T PF02239_consen  251 VSVHDDYAWKVVKTIPTQGGGL--FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGK  328 (369)
T ss_dssp             TT-STTTBTSEEEEEE-SSSS----EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSS
T ss_pred             cccchhhcCeEEEEEECCCCcc--eeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCC
Confidence               0001111       01111  1112446777765421 22356788999877643 34432111  11 23478999


Q ss_pred             EEEEEEecCCCCCeEEEEEcCCCce
Q 008927          412 CLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       412 ~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      .+|+..-..+  .+|.++|.++.+.
T Consensus       329 ~v~vS~~~~~--~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  329 EVWVSVWDGN--GAIVVYDAKTLKE  351 (369)
T ss_dssp             EEEEEEE--T--TEEEEEETTTTEE
T ss_pred             EEEEEEecCC--CEEEEEECCCcEE
Confidence            9888765433  3899999877653

...

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.22  E-value=0.00058  Score=68.26  Aligned_cols=234  Identities=11%  Similarity=0.065  Sum_probs=120.4

Q ss_pred             CeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       147 g~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      |..|.++.+.|+|++-..++|+++++..  ++.+.....    ...........+|. | ++++.          .++++
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~--g~~~~~~~p----~~~~~~~~~d~~g~-L-v~~~~----------g~~~~   90 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPET--GKKRVFPSP----GGFSSGALIDAGGR-L-IACEH----------GVRLL   90 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCc--CceEEEECC----CCcccceeecCCCe-E-EEEcc----------ccEEE
Confidence            3467777888999988889999999975  444433221    11122223444443 3 33332          35666


Q ss_pred             ECCCCCccCc-EEeeecC-C----ceeeeEECCCCCEEEEEEecC--CCCC--CCCceEEEEEecCCCceeeeEEEcCCC
Q 008927          227 ALNGQNIQEP-KVLVSGS-D----FYAFPRMDPRGERMAWIEWHH--PNMP--WDKAELWVGYISENGDVYKRVCVAGFD  296 (548)
Q Consensus       227 dl~~g~~~~~-~~L~~~~-~----~~~~p~~SPDGk~La~~~~~~--~~~p--~~~~~L~v~~~~~~g~~~~~~~l~~~~  296 (548)
                      +++.+.   . +.++... +    ....-+..|||. +.|.....  .+.+  -....||.++..  |.  ..+++.+.-
T Consensus        91 ~~~~~~---~~t~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~--g~--~~~l~~~~~  162 (307)
T COG3386          91 DPDTGG---KITLLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPD--GG--VVRLLDDDL  162 (307)
T ss_pred             eccCCc---eeEEeccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCC--CC--EEEeecCcE
Confidence            666555   4 4443221 1    123457889987 43333220  1111  123468877753  33  234444422


Q ss_pred             CCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccC--Cee---EeecccccccCCCcccccCcceeeeeecCCCCEE
Q 008927          297 PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN--NEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLI  371 (548)
Q Consensus       297 ~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~--g~~---~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l  371 (548)
                          .....+.|||||+.+|++|.  ....||+++.+.  +..   +.......+.+.|..      +...    .++.|
T Consensus       163 ----~~~NGla~SpDg~tly~aDT--~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG------~~vD----adG~l  226 (307)
T COG3386         163 ----TIPNGLAFSPDGKTLYVADT--PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDG------MAVD----ADGNL  226 (307)
T ss_pred             ----EecCceEECCCCCEEEEEeC--CCCeEEEEecCcccCccCCcceEEEccCCCCCCCc------eEEe----CCCCE
Confidence                34467899999995555553  224677776642  221   111111112233332      2221    22344


Q ss_pred             EEEEEeCCeEEEEEEECCCCceEeecCCCceeEee---eecCCEEEEEEecCCCC
Q 008927          372 ACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI---TLGNDCLFVEGASGVEP  423 (548)
Q Consensus       372 ~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~~~---s~d~~~l~~~~ss~~~p  423 (548)
                      +..+..+ -..|.++++++..+..+..|.......   .++.+.|+++++....+
T Consensus       227 w~~a~~~-g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~~~  280 (307)
T COG3386         227 WVAAVWG-GGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSGMS  280 (307)
T ss_pred             EEecccC-CceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCCCC
Confidence            4333333 357888998855566666664332222   35567888777665443

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=98.22  E-value=7.8e-05  Score=82.12  Aligned_cols=118  Identities=14%  Similarity=0.127  Sum_probs=75.4

Q ss_pred             CEEEEEeCCCCeEEEEeCCCCCCCceec-CCCCCCCCceecceeeCCCCCEEEE-EEeccCCCCCCceeEEEEEECCCCC
Q 008927          155 DTVIFSNYKDQRLYKHSIDSKDSSPLPI-TPDYGEPLVSYADGIFDPRFNRYVT-VREDRRQDALNSTTEIVAIALNGQN  232 (548)
Q Consensus       155 ~~i~F~~~~~~~Ly~~~~~~~~~~~~~l-T~~~~~~~~~~~~~~~SpDG~~i~~-v~~~~~~~~~~~~~~l~~idl~~g~  232 (548)
                      .+|+|.++..++|..+|.+|  ..++.| +..    ..-.-.|.|||||+.|+| ++-..-.    .+..||+-||.+..
T Consensus       319 tkiAfv~~~~~~L~~~D~dG--~n~~~ve~~~----~~~i~sP~~SPDG~~vAY~ts~e~~~----g~s~vYv~~L~t~~  388 (912)
T TIGR02171       319 AKLAFRNDVTGNLAYIDYTK--GASRAVEIED----TISVYHPDISPDGKKVAFCTGIEGLP----GKSSVYVRNLNASG  388 (912)
T ss_pred             eeEEEEEcCCCeEEEEecCC--CCceEEEecC----CCceecCcCCCCCCEEEEEEeecCCC----CCceEEEEehhccC
Confidence            37999997667999999998  778877 554    234567899999999999 6433200    24679999998754


Q ss_pred             ccCcEEeeecCCceeeeEE--CCCCC-EEEEEEecC---CCCCCCCceEEEEEecCCCce
Q 008927          233 IQEPKVLVSGSDFYAFPRM--DPRGE-RMAWIEWHH---PNMPWDKAELWVGYISENGDV  286 (548)
Q Consensus       233 ~~~~~~L~~~~~~~~~p~~--SPDGk-~La~~~~~~---~~~p~~~~~L~v~~~~~~g~~  286 (548)
                      .. +..|.-.  ..+-|+|  ..+|. -|+|++.-.   .+..|....-|.+... +|++
T Consensus       389 ~~-~vkl~ve--~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~-~gkf  444 (912)
T TIGR02171       389 SG-LVKLPVE--NAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFA-NGKF  444 (912)
T ss_pred             CC-ceEeecc--cccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEec-CCCC
Confidence            11 2222211  2334544  66777 577776211   1224555667888887 4553

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=98.17  E-value=0.00093  Score=64.55  Aligned_cols=295  Identities=16%  Similarity=0.162  Sum_probs=155.1

Q ss_pred             CcCCHHHHhcCCCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCe---eeEE
Q 008927           77 SPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGG---AFRI  152 (548)
Q Consensus        77 spit~~~l~~~~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~---~~~~  152 (548)
                      -|+-+..|-.....+..+.++. |+.++-...    ++...||..++..   .++.    ..+|..+ +|+-.   .|+|
T Consensus        75 Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~----Dr~Ir~w~~~DF~---~~eH----r~~R~nv-e~dhpT~V~Fap  142 (420)
T KOG2096|consen   75 HPLNVSVLKGHKKEVTDVAFSSDGKKLATISG----DRSIRLWDVRDFE---NKEH----RCIRQNV-EYDHPTRVVFAP  142 (420)
T ss_pred             cchhhhhhhccCCceeeeEEcCCCceeEEEeC----CceEEEEecchhh---hhhh----hHhhccc-cCCCceEEEECC
Confidence            4788888888778899999998 887776652    3555677665441   1111    1222222 33332   6888


Q ss_pred             ECCEEEEEeCCCCeEEEEeCCC--CCCCceecCCCC-----CCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927          153 FGDTVIFSNYKDQRLYKHSIDS--KDSSPLPITPDY-----GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       153 ~~~~i~F~~~~~~~Ly~~~~~~--~~~~~~~lT~~~-----~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      |-..+++.-.+...||++.+..  +++-+-..++..     +...+...++...-.++.|+--+++         +.|.+
T Consensus       143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d---------t~i~l  213 (420)
T KOG2096|consen  143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD---------TKICL  213 (420)
T ss_pred             CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCC---------CcEEE
Confidence            8888777766666777665532  112222222210     0001112233333344443332222         57899


Q ss_pred             EECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeee---EEEcCCCCCcccC
Q 008927          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR---VCVAGFDPTIVES  302 (548)
Q Consensus       226 idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~---~~l~~~~~~~~~~  302 (548)
                      +++.+..   ..-+..........++||||+.||-... .|     .-.+|..-...+|++++.   ..+.+..    ..
T Consensus       214 w~lkGq~---L~~idtnq~~n~~aavSP~GRFia~~gF-Tp-----DVkVwE~~f~kdG~fqev~rvf~LkGH~----sa  280 (420)
T KOG2096|consen  214 WDLKGQL---LQSIDTNQSSNYDAAVSPDGRFIAVSGF-TP-----DVKVWEPIFTKDGTFQEVKRVFSLKGHQ----SA  280 (420)
T ss_pred             EecCCce---eeeeccccccccceeeCCCCcEEEEecC-CC-----CceEEEEEeccCcchhhhhhhheeccch----hh
Confidence            9998554   4444322222335689999998884432 12     245666555556765443   3345543    56


Q ss_pred             CcCceECcCCcEEEEEeCCCCeeeEEEEeccC--Ce-eEeecccccccCCCcccccCc--ceeeeeecCCCCEEEEEEEe
Q 008927          303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESN--NE-VLAIYSLDAEFSRPLWVFGIN--SYEIIQSHGEKNLIACSYRQ  377 (548)
Q Consensus       303 ~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~--g~-~~~l~~~~~d~~~p~w~~~~~--~~~~~~~~~d~~~l~~~~~~  377 (548)
                      +..+.||++.+-+....+ +|.|.||-.|..=  ++ .+.|- .   ...|....|..  .+...|   .++.|..+.  
T Consensus       281 V~~~aFsn~S~r~vtvSk-DG~wriwdtdVrY~~~qDpk~Lk-~---g~~pl~aag~~p~RL~lsP---~g~~lA~s~--  350 (420)
T KOG2096|consen  281 VLAAAFSNSSTRAVTVSK-DGKWRIWDTDVRYEAGQDPKILK-E---GSAPLHAAGSEPVRLELSP---SGDSLAVSF--  350 (420)
T ss_pred             eeeeeeCCCcceeEEEec-CCcEEEeeccceEecCCCchHhh-c---CCcchhhcCCCceEEEeCC---CCcEEEeec--
Confidence            788999999984444445 7889998776521  11 11111 1   00111111111  234443   555554332  


Q ss_pred             CCeEEEEEEECCCCceEe-ecC-CCceeEee--eecCCEEEEEE
Q 008927          378 NGRSYLGILDDFGHSLSL-LDI-PFTDIDNI--TLGNDCLFVEG  417 (548)
Q Consensus       378 ~g~~~L~~~dl~~g~~~~-l~~-~~~~~~~~--s~d~~~l~~~~  417 (548)
                        -+.|.++..++|+... +.. ....+..+  +++|+.++-.+
T Consensus       351 --gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG  392 (420)
T KOG2096|consen  351 --GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG  392 (420)
T ss_pred             --CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence              2346677777776442 221 23346555  56777654433

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=98.12  E-value=0.00023  Score=69.53  Aligned_cols=167  Identities=18%  Similarity=0.134  Sum_probs=96.8

Q ss_pred             eeeEEECCEEEEEe--CCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927          148 GAFRIFGDTVIFSN--YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       148 ~~~~~~~~~i~F~~--~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      .+.+++++.++|..  +...+||....+   +..+.+...     ..+..|.|+++|. +.++.....      ...++.
T Consensus        29 ~AvS~dg~~~A~v~~~~~~~~L~~~~~~---~~~~~~~~g-----~~l~~PS~d~~g~-~W~v~~~~~------~~~~~~   93 (253)
T PF10647_consen   29 PAVSPDGSRVAAVSEGDGGRSLYVGPAG---GPVRPVLTG-----GSLTRPSWDPDGW-VWTVDDGSG------GVRVVR   93 (253)
T ss_pred             eEECCCCCeEEEEEEcCCCCEEEEEcCC---CcceeeccC-----CccccccccCCCC-EEEEEcCCC------ceEEEE
Confidence            46778899999998  566799999875   345554332     3678899999965 444422211      122232


Q ss_pred             EECCCCCccCcEEee-ecCC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc-----eeeeEEEcCCCCC
Q 008927          226 IALNGQNIQEPKVLV-SGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-----VYKRVCVAGFDPT  298 (548)
Q Consensus       226 idl~~g~~~~~~~L~-~~~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~-----~~~~~~l~~~~~~  298 (548)
                       +..++.. ....+. .... .+...++||||.++|++....     +..+|++..+..++.     +.....+.... .
T Consensus        94 -~~~~g~~-~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~-----~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~  165 (253)
T PF10647_consen   94 -DSASGTG-EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDG-----GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL-L  165 (253)
T ss_pred             -ecCCCcc-eeEEecccccCCceEEEEECCCCcEEEEEEecC-----CCCeEEEEEEEeCCCCCcceeccceEecccc-c
Confidence             3333430 022222 1111 567889999999999998443     257899887754322     11111222111 1


Q ss_pred             cccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEee
Q 008927          299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAI  340 (548)
Q Consensus       299 ~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l  340 (548)
                        ..+....|.+|+.|+++.....+.... .+...++..+.+
T Consensus       166 --~~v~~v~W~~~~~L~V~~~~~~~~~~~-~v~~dG~~~~~l  204 (253)
T PF10647_consen  166 --SDVTDVAWSDDSTLVVLGRSAGGPVVR-LVSVDGGPSTPL  204 (253)
T ss_pred             --CcceeeeecCCCEEEEEeCCCCCceeE-EEEccCCccccc
Confidence              356789999999977776552322222 455556655555

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.09  E-value=0.002  Score=64.44  Aligned_cols=214  Identities=13%  Similarity=0.110  Sum_probs=108.5

Q ss_pred             cCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccC-CCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEE
Q 008927           91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT-PKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY  168 (548)
Q Consensus        91 ~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt-~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly  168 (548)
                      -..|.+.| .+.++|+...     ...|++.+... +..+.+. |..++         . .-..+.+..++..+.  .++
T Consensus        27 gEgP~w~~~~~~L~w~DI~-----~~~i~r~~~~~-g~~~~~~~p~~~~---------~-~~~~d~~g~Lv~~~~--g~~   88 (307)
T COG3386          27 GEGPVWDPDRGALLWVDIL-----GGRIHRLDPET-GKKRVFPSPGGFS---------S-GALIDAGGRLIACEH--GVR   88 (307)
T ss_pred             ccCccCcCCCCEEEEEeCC-----CCeEEEecCCc-CceEEEECCCCcc---------c-ceeecCCCeEEEEcc--ccE
Confidence            34678888 7778888753     23466665542 2222222 22211         0 112344445555533  366


Q ss_pred             EEeCCCCCCCc-eecCCCCC-CCCceecceeeCCCCCEEEEEEec---cCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927          169 KHSIDSKDSSP-LPITPDYG-EPLVSYADGIFDPRFNRYVTVRED---RRQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (548)
Q Consensus       169 ~~~~~~~~~~~-~~lT~~~~-~~~~~~~~~~~SpDG~~i~~v~~~---~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~  243 (548)
                      +++++.  +.. +.++.... ....+..|....|||.. +|..-.   ...........||++|..++.   .+++...-
T Consensus        89 ~~~~~~--~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~-wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~---~~l~~~~~  162 (307)
T COG3386          89 LLDPDT--GGKITLLAEPEDGLPLNRPNDGVVDPDGRI-WFGDMGYFDLGKSEERPTGSLYRVDPDGGV---VRLLDDDL  162 (307)
T ss_pred             EEeccC--CceeEEeccccCCCCcCCCCceeEcCCCCE-EEeCCCccccCccccCCcceEEEEcCCCCE---EEeecCcE
Confidence            666554  344 45544321 12356778899999874 443111   001112234589999986654   44444322


Q ss_pred             CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEec-CCCceeeeE--EEcCCCCCcccCCcCceECcCCcEEEEEeC
Q 008927          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRV--CVAGFDPTIVESPTEPKWSSKGELFFVTDR  320 (548)
Q Consensus       244 ~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~-~~g~~~~~~--~l~~~~~~~~~~~~~~~wspDG~L~~~sd~  320 (548)
                      .+-...+|||||+.|++.. ..      ...||.++++ .++.+...+  ...... .  ...-...-..||.|+. +..
T Consensus       163 ~~~NGla~SpDg~tly~aD-T~------~~~i~r~~~d~~~g~~~~~~~~~~~~~~-~--G~PDG~~vDadG~lw~-~a~  231 (307)
T COG3386         163 TIPNGLAFSPDGKTLYVAD-TP------ANRIHRYDLDPATGPIGGRRGFVDFDEE-P--GLPDGMAVDADGNLWV-AAV  231 (307)
T ss_pred             EecCceEECCCCCEEEEEe-CC------CCeEEEEecCcccCccCCcceEEEccCC-C--CCCCceEEeCCCCEEE-ecc
Confidence            2334568999999776543 21      4578888876 233322221  111111 0  1222234445565554 333


Q ss_pred             CCCeeeEEEEeccCCeeEee
Q 008927          321 KNGFWNLHKWIESNNEVLAI  340 (548)
Q Consensus       321 ~~g~~~Ly~~d~~~g~~~~l  340 (548)
                       .+.+.|.++++++.....+
T Consensus       232 -~~g~~v~~~~pdG~l~~~i  250 (307)
T COG3386         232 -WGGGRVVRFNPDGKLLGEI  250 (307)
T ss_pred             -cCCceEEEECCCCcEEEEE
Confidence             2335788888874333333

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.08  E-value=0.003  Score=62.13  Aligned_cols=252  Identities=14%  Similarity=0.042  Sum_probs=135.4

Q ss_pred             eeEEE-CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIF-GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~-~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      ...|. +..|+|...-..-++++|..++ ..++.++...  ...-|.-..|||||++|+.+ |+..+   ..+..|-+.|
T Consensus        11 a~~p~~~~avafaRRPG~~~~v~D~~~g-~~~~~~~a~~--gRHFyGHg~fs~dG~~LytT-End~~---~g~G~IgVyd   83 (305)
T PF07433_consen   11 AAHPTRPEAVAFARRPGTFALVFDCRTG-QLLQRLWAPP--GRHFYGHGVFSPDGRLLYTT-ENDYE---TGRGVIGVYD   83 (305)
T ss_pred             eeCCCCCeEEEEEeCCCcEEEEEEcCCC-ceeeEEcCCC--CCEEecCEEEcCCCCEEEEe-ccccC---CCcEEEEEEE
Confidence            34453 3457777654567899999872 3345565542  23346667899999986554 55422   2467899999


Q ss_pred             CCCCCccCcEEeeecCCce---eeeEECCCCCEEEEEEe----cCCCC-------CCCCceEEEEEecCCCceeeeEEEc
Q 008927          228 LNGQNIQEPKVLVSGSDFY---AFPRMDPRGERMAWIEW----HHPNM-------PWDKAELWVGYISENGDVYKRVCVA  293 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~---~~p~~SPDGk~La~~~~----~~~~~-------p~~~~~L~v~~~~~~g~~~~~~~l~  293 (548)
                      +..+    .+++.+-+.+-   -...|.|||+.|+ ++.    .+|+.       +-....|-++|.. +|++.+...+.
T Consensus        84 ~~~~----~~ri~E~~s~GIGPHel~l~pDG~tLv-VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~-sG~ll~q~~Lp  157 (305)
T PF07433_consen   84 AARG----YRRIGEFPSHGIGPHELLLMPDGETLV-VANGGIETHPDSGRAKLNLDTMQPSLVYLDAR-SGALLEQVELP  157 (305)
T ss_pred             CcCC----cEEEeEecCCCcChhhEEEcCCCCEEE-EEcCCCccCcccCceecChhhcCCceEEEecC-CCceeeeeecC
Confidence            9844    46665543321   1347999999988 441    22221       1123567777776 57754544454


Q ss_pred             CCCCCcccCCcCceECcCCcEEEE-EeCCCC---eeeEEEEeccCCeeEeecccccccCCCccccc---CcceeeeeecC
Q 008927          294 GFDPTIVESPTEPKWSSKGELFFV-TDRKNG---FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFG---INSYEIIQSHG  366 (548)
Q Consensus       294 ~~~~~~~~~~~~~~wspDG~L~~~-sd~~~g---~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~---~~~~~~~~~~~  366 (548)
                      .....  .++..+.|.+||.++|- +.++..   ..-|.+... ++..+.+. ...    ..|..-   ..+.++..   
T Consensus       158 ~~~~~--lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~-~p~----~~~~~l~~Y~gSIa~~~---  226 (305)
T PF07433_consen  158 PDLHQ--LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-GGALRLLP-APE----EQWRRLNGYIGSIAADR---  226 (305)
T ss_pred             ccccc--cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-CCcceecc-CCh----HHHHhhCCceEEEEEeC---
Confidence            33212  57888999999995554 444221   112344432 33333332 110    112100   01234442   


Q ss_pred             CCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEc
Q 008927          367 EKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTL  431 (548)
Q Consensus       367 d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~  431 (548)
                      +++.|++++-+.+...  ++|.++|++..... ..+..++.+.++.  |+.++..  ..++.+..
T Consensus       227 ~g~~ia~tsPrGg~~~--~~d~~tg~~~~~~~-l~D~cGva~~~~~--f~~ssG~--G~~~~~~~  284 (305)
T PF07433_consen  227 DGRLIAVTSPRGGRVA--VWDAATGRLLGSVP-LPDACGVAPTDDG--FLVSSGQ--GQLIRLSP  284 (305)
T ss_pred             CCCEEEEECCCCCEEE--EEECCCCCEeeccc-cCceeeeeecCCc--eEEeCCC--ccEEEccC
Confidence            5667777666666554  45888887654321 2345555433332  4444322  44555543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.06  E-value=0.0031  Score=67.43  Aligned_cols=226  Identities=12%  Similarity=0.049  Sum_probs=138.3

Q ss_pred             eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (548)
Q Consensus       150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~  229 (548)
                      |...|++|+|-..+-+||-+.....   +.-.+-...  ...+...+.+||||+.|+.-++|.         -+-++|..
T Consensus       315 ~N~tGDWiA~g~~klgQLlVweWqs---EsYVlKQQg--H~~~i~~l~YSpDgq~iaTG~eDg---------KVKvWn~~  380 (893)
T KOG0291|consen  315 FNSTGDWIAFGCSKLGQLLVWEWQS---ESYVLKQQG--HSDRITSLAYSPDGQLIATGAEDG---------KVKVWNTQ  380 (893)
T ss_pred             ecccCCEEEEcCCccceEEEEEeec---cceeeeccc--cccceeeEEECCCCcEEEeccCCC---------cEEEEecc
Confidence            4445889999887777887777753   222221110  123567788999999988866653         36667877


Q ss_pred             CCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (548)
Q Consensus       230 ~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws  309 (548)
                      +|-.  ....++....+....|+.+|+.|+-.+.+        ..+...|+.. ..  +.+.++... .  .+....+-.
T Consensus       381 SgfC--~vTFteHts~Vt~v~f~~~g~~llssSLD--------GtVRAwDlkR-Yr--NfRTft~P~-p--~QfscvavD  444 (893)
T KOG0291|consen  381 SGFC--FVTFTEHTSGVTAVQFTARGNVLLSSSLD--------GTVRAWDLKR-YR--NFRTFTSPE-P--IQFSCVAVD  444 (893)
T ss_pred             CceE--EEEeccCCCceEEEEEEecCCEEEEeecC--------CeEEeeeecc-cc--eeeeecCCC-c--eeeeEEEEc
Confidence            7741  22334444457778899999977644432        3466667763 32  345444432 1  344555666


Q ss_pred             cCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECC
Q 008927          310 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF  389 (548)
Q Consensus       310 pDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~  389 (548)
                      |.|.|++..+.  ...+||+++..+|+...+...   .+.|.     +..++.|   ++. ++++...+..-++|-+=-.
T Consensus       445 ~sGelV~AG~~--d~F~IfvWS~qTGqllDiLsG---HEgPV-----s~l~f~~---~~~-~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  445 PSGELVCAGAQ--DSFEIFVWSVQTGQLLDILSG---HEGPV-----SGLSFSP---DGS-LLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             CCCCEEEeecc--ceEEEEEEEeecCeeeehhcC---CCCcc-----eeeEEcc---ccC-eEEeccccceEEEEEeecc
Confidence            77988887665  558999999999997766532   22332     1234543   455 5556666777777755445


Q ss_pred             CCceEeecCCCceeE-eeeecCCEEEEEEec
Q 008927          390 GHSLSLLDIPFTDID-NITLGNDCLFVEGAS  419 (548)
Q Consensus       390 ~g~~~~l~~~~~~~~-~~s~d~~~l~~~~ss  419 (548)
                      .+.++.|...-.... .++|||+.+++....
T Consensus       511 ~~~vEtl~i~sdvl~vsfrPdG~elaVaTld  541 (893)
T KOG0291|consen  511 SGTVETLEIRSDVLAVSFRPDGKELAVATLD  541 (893)
T ss_pred             CceeeeEeeccceeEEEEcCCCCeEEEEEec
Confidence            567777764322221 347899988776654

>PRK05077 frsA fermentation/respiration switch protein; Reviewed

Probab=98.05  E-value=8.9e-06  Score=85.36  Aligned_cols=67  Identities=21%  Similarity=0.319  Sum_probs=52.7

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ..|.|+++.. ||.+++||++.|..       +++.|+|| +|||..+.....|....++|+++||+|+.+|+||.
T Consensus       167 ~~e~v~i~~~-~g~~l~g~l~~P~~-------~~~~P~Vl-i~gG~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~  233 (414)
T PRK05077        167 ELKELEFPIP-GGGPITGFLHLPKG-------DGPFPTVL-VCGGLDSLQTDYYRLFRDYLAPRGIAMLTIDMPSV  233 (414)
T ss_pred             ceEEEEEEcC-CCcEEEEEEEECCC-------CCCccEEE-EeCCcccchhhhHHHHHHHHHhCCCEEEEECCCCC
Confidence            3678999997 88899999999952       35679877 56776654444456677899999999999999973

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=97.98  E-value=0.0012  Score=61.89  Aligned_cols=190  Identities=11%  Similarity=0.054  Sum_probs=112.5

Q ss_pred             CCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEE-CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCC
Q 008927          110 TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF-GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGE  188 (548)
Q Consensus       110 ~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~-~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~  188 (548)
                      .|+|...||.+..-   ..+++    |...++|.     ...+. ...=+|+.+.+++|++-|+..+ .-..+|.++.  
T Consensus       102 seDgt~kIWdlR~~---~~qR~----~~~~spVn-----~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~~liPe~--  166 (311)
T KOG0315|consen  102 SEDGTVKIWDLRSL---SCQRN----YQHNSPVN-----TVVLHPNQTELISGDQSGNIRVWDLGEN-SCTHELIPED--  166 (311)
T ss_pred             CCCceEEEEeccCc---ccchh----ccCCCCcc-----eEEecCCcceEEeecCCCcEEEEEccCC-ccccccCCCC--
Confidence            45788888877543   12222    22222321     22333 2244567778889999898652 3346777753  


Q ss_pred             CCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc-cCcEEe---eecCCceeeeEECCCCCEEEEEEec
Q 008927          189 PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QEPKVL---VSGSDFYAFPRMDPRGERMAWIEWH  264 (548)
Q Consensus       189 ~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~-~~~~~L---~~~~~~~~~p~~SPDGk~La~~~~~  264 (548)
                       ...+..+...|||+.++.+. +        +..+|++++-++.. .+...+   ...........+|||+|+||-.+. 
T Consensus       167 -~~~i~sl~v~~dgsml~a~n-n--------kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss-  235 (311)
T KOG0315|consen  167 -DTSIQSLTVMPDGSMLAAAN-N--------KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS-  235 (311)
T ss_pred             -CcceeeEEEcCCCcEEEEec-C--------CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC-
Confidence             35677888999999988863 2        24678888876532 012222   222344567789999999995442 


Q ss_pred             CCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeec
Q 008927          265 HPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (548)
Q Consensus       265 ~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~  341 (548)
                             ...+++.+.+.-  +.-.+.+.+..    ..+....||.||+.++.... ++...||  +++.++..+..
T Consensus       236 -------dktv~iwn~~~~--~kle~~l~gh~----rWvWdc~FS~dg~YlvTass-d~~~rlW--~~~~~k~v~qy  296 (311)
T KOG0315|consen  236 -------DKTVKIWNTDDF--FKLELVLTGHQ----RWVWDCAFSADGEYLVTASS-DHTARLW--DLSAGKEVRQY  296 (311)
T ss_pred             -------CceEEEEecCCc--eeeEEEeecCC----ceEEeeeeccCccEEEecCC-CCceeec--ccccCceeeec
Confidence                   235666666531  22234566654    56788899999985555443 4555554  45566654443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.94  E-value=0.0026  Score=62.11  Aligned_cols=200  Identities=15%  Similarity=0.109  Sum_probs=101.5

Q ss_pred             CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~  243 (548)
                      |++|+++.-    +..+++.............+.+|+||+.++++.+..      ....|+.....+..    +.+..+.
T Consensus         1 dG~l~~~~~----~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~------~~~~L~~~~~~~~~----~~~~~g~   66 (253)
T PF10647_consen    1 DGQLVRVSG----GGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEGD------GGRSLYVGPAGGPV----RPVLTGG   66 (253)
T ss_pred             CCcEEEecC----CceeECCCCcCcCCccccceEECCCCCeEEEEEEcC------CCCEEEEEcCCCcc----eeeccCC
Confidence            356776442    345555443211123567889999999999997222      24689998876553    4443443


Q ss_pred             CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCC
Q 008927          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN  322 (548)
Q Consensus       244 ~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~  322 (548)
                       .+..|.|++||...+ +. +..    ....++. +.. .+... ...+.-....  ..+..+.+||||. ++++... .
T Consensus        67 -~l~~PS~d~~g~~W~-v~-~~~----~~~~~~~-~~~-~g~~~-~~~v~~~~~~--~~I~~l~vSpDG~RvA~v~~~-~  133 (253)
T PF10647_consen   67 -SLTRPSWDPDGWVWT-VD-DGS----GGVRVVR-DSA-SGTGE-PVEVDWPGLR--GRITALRVSPDGTRVAVVVED-G  133 (253)
T ss_pred             -ccccccccCCCCEEE-EE-cCC----CceEEEE-ecC-CCcce-eEEecccccC--CceEEEEECCCCcEEEEEEec-C
Confidence             467899999976333 22 221    1122222 222 23321 2223222100  2578899999999 8888765 3


Q ss_pred             CeeeEEEEecc---CCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEee
Q 008927          323 GFWNLHKWIES---NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL  396 (548)
Q Consensus       323 g~~~Ly~~d~~---~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l  396 (548)
                      +..+||...+.   +|....+.... ....+. ........|.    ++..|++.....+......+...++..+.+
T Consensus       134 ~~~~v~va~V~r~~~g~~~~l~~~~-~~~~~~-~~~v~~v~W~----~~~~L~V~~~~~~~~~~~~v~~dG~~~~~l  204 (253)
T PF10647_consen  134 GGGRVYVAGVVRDGDGVPRRLTGPR-RVAPPL-LSDVTDVAWS----DDSTLVVLGRSAGGPVVRLVSVDGGPSTPL  204 (253)
T ss_pred             CCCeEEEEEEEeCCCCCcceeccce-Eecccc-cCcceeeeec----CCCEEEEEeCCCCCceeEEEEccCCccccc
Confidence            44666665432   23122232100 000000 0011234565    556666655543332222456666666665

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=97.85  E-value=0.029  Score=53.56  Aligned_cols=230  Identities=11%  Similarity=0.087  Sum_probs=119.6

Q ss_pred             EEEEEeCCCCeEEEEeCCCCC---CCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCC
Q 008927          156 TVIFSNYKDQRLYKHSIDSKD---SSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ  231 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~---~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g  231 (548)
                      .++++..+|..+..-++..++   |.+ ++++-.    .-.+.+...|+||+..+-.+-|         ..|..+|+++|
T Consensus        29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH----sH~v~dv~~s~dg~~alS~swD---------~~lrlWDl~~g   95 (315)
T KOG0279|consen   29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH----SHFVSDVVLSSDGNFALSASWD---------GTLRLWDLATG   95 (315)
T ss_pred             ceEEEcccceEEEEEEeccCccccCceeeeeecc----ceEecceEEccCCceEEecccc---------ceEEEEEecCC
Confidence            456666566544333332211   333 455543    3467889999999974433222         36888899999


Q ss_pred             CccCcEEeeecCC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc
Q 008927          232 NIQEPKVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS  310 (548)
Q Consensus       232 ~~~~~~~L~~~~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp  310 (548)
                      +   .++...+.. -+...++|||.++|+=-+.        ...|-+.+.-+..    ...+......  ..+....|+|
T Consensus        96 ~---~t~~f~GH~~dVlsva~s~dn~qivSGSr--------DkTiklwnt~g~c----k~t~~~~~~~--~WVscvrfsP  158 (315)
T KOG0279|consen   96 E---STRRFVGHTKDVLSVAFSTDNRQIVSGSR--------DKTIKLWNTLGVC----KYTIHEDSHR--EWVSCVRFSP  158 (315)
T ss_pred             c---EEEEEEecCCceEEEEecCCCceeecCCC--------cceeeeeeecccE----EEEEecCCCc--CcEEEEEEcC
Confidence            7   555554433 3667789999999872221        1235555554221    1222221101  5678899999


Q ss_pred             CCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECC
Q 008927          311 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF  389 (548)
Q Consensus       311 DG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~  389 (548)
                      +.. .++++-..++  .+-.+|+.+-+.+.-...     ....   .+...++|   || .+.....++|  ++++.|+.
T Consensus       159 ~~~~p~Ivs~s~Dk--tvKvWnl~~~~l~~~~~g-----h~~~---v~t~~vSp---DG-slcasGgkdg--~~~LwdL~  222 (315)
T KOG0279|consen  159 NESNPIIVSASWDK--TVKVWNLRNCQLRTTFIG-----HSGY---VNTVTVSP---DG-SLCASGGKDG--EAMLWDLN  222 (315)
T ss_pred             CCCCcEEEEccCCc--eEEEEccCCcchhhcccc-----cccc---EEEEEECC---CC-CEEecCCCCc--eEEEEEcc
Confidence            974 5555432122  355566655554433221     1111   12234554   54 4443433444  56667776


Q ss_pred             CCce-EeecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          390 GHSL-SLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       390 ~g~~-~~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      .++- ..+. .+..+..+.-..+++++.....   ..|-+.|++++.
T Consensus       223 ~~k~lysl~-a~~~v~sl~fspnrywL~~at~---~sIkIwdl~~~~  265 (315)
T KOG0279|consen  223 EGKNLYSLE-AFDIVNSLCFSPNRYWLCAATA---TSIKIWDLESKA  265 (315)
T ss_pred             CCceeEecc-CCCeEeeEEecCCceeEeeccC---CceEEEeccchh
Confidence            6653 2222 2334555533333333333322   347777887665

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.85  E-value=0.014  Score=57.48  Aligned_cols=215  Identities=16%  Similarity=0.114  Sum_probs=115.0

Q ss_pred             ceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC--CceeeeEECCCCCEEEEEEecCCCC
Q 008927          191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS--DFYAFPRMDPRGERMAWIEWHHPNM  268 (548)
Q Consensus       191 ~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~--~~~~~p~~SPDGk~La~~~~~~~~~  268 (548)
                      .|-.++..+|+...++++..+.       -..++++|..+|+.  ...+...+  -||..-.|||||++|+ +..+.-  
T Consensus         5 ~RgH~~a~~p~~~~avafaRRP-------G~~~~v~D~~~g~~--~~~~~a~~gRHFyGHg~fs~dG~~Ly-tTEnd~--   72 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRP-------GTFALVFDCRTGQL--LQRLWAPPGRHFYGHGVFSPDGRLLY-TTENDY--   72 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCC-------CcEEEEEEcCCCce--eeEEcCCCCCEEecCEEEcCCCCEEE-Eecccc--
Confidence            3556678899655555554442       25799999999972  33454433  3678889999999875 442321  


Q ss_pred             CCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEE-----eCCCCe---------eeEEEEecc
Q 008927          269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT-----DRKNGF---------WNLHKWIES  333 (548)
Q Consensus       269 p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~s-----d~~~g~---------~~Ly~~d~~  333 (548)
                      .-....|-|.|+.. + +...-......    ....+..|.|||+ |++..     ..+.|+         .+|..+|..
T Consensus        73 ~~g~G~IgVyd~~~-~-~~ri~E~~s~G----IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~  146 (305)
T PF07433_consen   73 ETGRGVIGVYDAAR-G-YRRIGEFPSHG----IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR  146 (305)
T ss_pred             CCCcEEEEEEECcC-C-cEEEeEecCCC----cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence            11356788888872 2 21222233321    4467889999998 65541     111232         346777777


Q ss_pred             CCeeE-eecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC-----eEEEEEEECCCCceEeecCCC-------
Q 008927          334 NNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-----RSYLGILDDFGHSLSLLDIPF-------  400 (548)
Q Consensus       334 ~g~~~-~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g-----~~~L~~~dl~~g~~~~l~~~~-------  400 (548)
                      +|++. +..-.+ +    .-......+++.    .++.+++.....|     ..-|.+.+ .++..+.+..+.       
T Consensus       147 sG~ll~q~~Lp~-~----~~~lSiRHLa~~----~~G~V~~a~Q~qg~~~~~~PLva~~~-~g~~~~~~~~p~~~~~~l~  216 (305)
T PF07433_consen  147 SGALLEQVELPP-D----LHQLSIRHLAVD----GDGTVAFAMQYQGDPGDAPPLVALHR-RGGALRLLPAPEEQWRRLN  216 (305)
T ss_pred             CCceeeeeecCc-c----ccccceeeEEec----CCCcEEEEEecCCCCCccCCeEEEEc-CCCcceeccCChHHHHhhC
Confidence            88753 221100 0    011233345554    3445555544322     22233333 233355554431       


Q ss_pred             ceeEeee--ecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          401 TDIDNIT--LGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       401 ~~~~~~s--~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      .-+.++.  .+++.+++  ++ .+-..+.++|..++++
T Consensus       217 ~Y~gSIa~~~~g~~ia~--ts-PrGg~~~~~d~~tg~~  251 (305)
T PF07433_consen  217 GYIGSIAADRDGRLIAV--TS-PRGGRVAVWDAATGRL  251 (305)
T ss_pred             CceEEEEEeCCCCEEEE--EC-CCCCEEEEEECCCCCE
Confidence            1244443  34444433  23 2345677788888874

>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.85  E-value=2.9e-05  Score=73.58  Aligned_cols=66  Identities=21%  Similarity=0.308  Sum_probs=52.3

Q ss_pred             EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCC
Q 008927          463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGL  538 (548)
Q Consensus       463 ~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGy  538 (548)
                      .++|++. +|..|+|||..|+.      +.++.|+||..||==.   +.++-+.+-.|+..||+||.++.||=.++
T Consensus        58 dvTf~g~-~g~rI~gwlvlP~~------~~~~~P~vV~fhGY~g---~~g~~~~~l~wa~~Gyavf~MdvRGQg~~  123 (321)
T COG3458          58 DVTFTGY-GGARIKGWLVLPRH------EKGKLPAVVQFHGYGG---RGGEWHDMLHWAVAGYAVFVMDVRGQGSS  123 (321)
T ss_pred             EEEEecc-CCceEEEEEEeecc------cCCccceEEEEeeccC---CCCCccccccccccceeEEEEecccCCCc
Confidence            4889997 99999999999974      2368899999998311   11233456689999999999999997776

>PTZ00421 coronin; Provisional

Probab=97.81  E-value=0.005  Score=66.01  Aligned_cols=212  Identities=10%  Similarity=0.040  Sum_probs=117.2

Q ss_pred             CCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCc-------ccCCCCCCccccceeeCCeeeEEECCEEEE
Q 008927           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPS-------DITPKEYAVRTTAQEYGGGAFRIFGDTVIF  159 (548)
Q Consensus        88 ~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~-------~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F  159 (548)
                      ...+..+.++| ++.++....   ++|...||.+...  +...       .|....    ..+   ..-.|.|+++.++.
T Consensus        75 ~~~V~~v~fsP~d~~~LaSgS---~DgtIkIWdi~~~--~~~~~~~~~l~~L~gH~----~~V---~~l~f~P~~~~iLa  142 (493)
T PTZ00421         75 EGPIIDVAFNPFDPQKLFTAS---EDGTIMGWGIPEE--GLTQNISDPIVHLQGHT----KKV---GIVSFHPSAMNVLA  142 (493)
T ss_pred             CCCEEEEEEcCCCCCEEEEEe---CCCEEEEEecCCC--ccccccCcceEEecCCC----CcE---EEEEeCcCCCCEEE
Confidence            35577888888 665544432   2577777876443  1111       111111    111   12357777666666


Q ss_pred             EeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE
Q 008927          160 SNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV  238 (548)
Q Consensus       160 ~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~  238 (548)
                      +...++.|.+.|+..  ++. ..+...    ...+..+.|+|||+.|+..+.+         ..|.++|+.+++.  ...
T Consensus       143 Sgs~DgtVrIWDl~t--g~~~~~l~~h----~~~V~sla~spdG~lLatgs~D---------g~IrIwD~rsg~~--v~t  205 (493)
T PTZ00421        143 SAGADMVVNVWDVER--GKAVEVIKCH----SDQITSLEWNLDGSLLCTTSKD---------KKLNIIDPRDGTI--VSS  205 (493)
T ss_pred             EEeCCCEEEEEECCC--CeEEEEEcCC----CCceEEEEEECCCCEEEEecCC---------CEEEEEECCCCcE--EEE
Confidence            666677787778875  443 333322    1235678899999987765433         3688889988761  222


Q ss_pred             eeecCC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEE
Q 008927          239 LVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV  317 (548)
Q Consensus       239 L~~~~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~  317 (548)
                      +....+ ......|++++..|+-+..+..    ....|.+.|+.....  ......... .  .....+.|++|++++++
T Consensus       206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~s----~Dr~VklWDlr~~~~--p~~~~~~d~-~--~~~~~~~~d~d~~~L~l  276 (493)
T PTZ00421        206 VEAHASAKSQRCLWAKRKDLIITLGCSKS----QQRQIMLWDTRKMAS--PYSTVDLDQ-S--SALFIPFFDEDTNLLYI  276 (493)
T ss_pred             EecCCCCcceEEEEcCCCCeEEEEecCCC----CCCeEEEEeCCCCCC--ceeEeccCC-C--CceEEEEEcCCCCEEEE
Confidence            322221 1234579999887764443211    235688888864222  111111111 1  23455789999995555


Q ss_pred             EeCCCCeeeEEEEeccCCeeEe
Q 008927          318 TDRKNGFWNLHKWIESNNEVLA  339 (548)
Q Consensus       318 sd~~~g~~~Ly~~d~~~g~~~~  339 (548)
                      ...+++  .|..+++.+++...
T Consensus       277 ggkgDg--~Iriwdl~~~~~~~  296 (493)
T PTZ00421        277 GSKGEG--NIRCFELMNERLTF  296 (493)
T ss_pred             EEeCCC--eEEEEEeeCCceEE
Confidence            433233  56666776666443

>PTZ00421 coronin; Provisional

Probab=97.80  E-value=0.033  Score=59.76  Aligned_cols=205  Identities=13%  Similarity=0.147  Sum_probs=105.1

Q ss_pred             eecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEECCCCCc-----cCcEEeeecCCceeeeEECCCCCEEEEEEecC
Q 008927          192 SYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-----QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHH  265 (548)
Q Consensus       192 ~~~~~~~Sp-DG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~-----~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~  265 (548)
                      .+.++.|+| |++.|+..+.+         ..|.++|+.++..     .....|......+....|+|++..++..... 
T Consensus        77 ~V~~v~fsP~d~~~LaSgS~D---------gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~-  146 (493)
T PTZ00421         77 PIIDVAFNPFDPQKLFTASED---------GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA-  146 (493)
T ss_pred             CEEEEEEcCCCCCEEEEEeCC---------CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC-
Confidence            466788999 88876665443         2566677765420     0012333333446677899987544334311 


Q ss_pred             CCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeE-eecccc
Q 008927          266 PNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLD  344 (548)
Q Consensus       266 ~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~-~l~~~~  344 (548)
                            ...|.+.|++. ++  ....+.+..    ..+....|+|||++++.... ++  .|..+|+.+++.. .+....
T Consensus       147 ------DgtVrIWDl~t-g~--~~~~l~~h~----~~V~sla~spdG~lLatgs~-Dg--~IrIwD~rsg~~v~tl~~H~  210 (493)
T PTZ00421        147 ------DMVVNVWDVER-GK--AVEVIKCHS----DQITSLEWNLDGSLLCTTSK-DK--KLNIIDPRDGTIVSSVEAHA  210 (493)
T ss_pred             ------CCEEEEEECCC-Ce--EEEEEcCCC----CceEEEEEECCCCEEEEecC-CC--EEEEEECCCCcEEEEEecCC
Confidence                  24688889874 43  233444433    45788999999996555544 44  4666777666542 222110


Q ss_pred             cccCCCcccccCcceeeeeecCCCCEEEEEEE-eCCeEEEEEEECCCCc--eEeecCCC-c-eeEe-eeecCCEEEEEEe
Q 008927          345 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHS--LSLLDIPF-T-DIDN-ITLGNDCLFVEGA  418 (548)
Q Consensus       345 ~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~-~~g~~~L~~~dl~~g~--~~~l~~~~-~-~~~~-~s~d~~~l~~~~s  418 (548)
                          ...    .....|.+   +++.|+.... ......|.++|+....  ...+.... . .... ++++++.++..+.
T Consensus       211 ----~~~----~~~~~w~~---~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk  279 (493)
T PTZ00421        211 ----SAK----SQRCLWAK---RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSK  279 (493)
T ss_pred             ----CCc----ceEEEEcC---CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence                000    00122332   4455543322 1223457777875432  11111111 1 1112 2566665554432


Q ss_pred             cCCCCCeEEEEEcCCCce
Q 008927          419 SGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       419 s~~~p~~l~~~d~~~~~~  436 (548)
                      .   -..|..+|+.+++.
T Consensus       280 g---Dg~Iriwdl~~~~~  294 (493)
T PTZ00421        280 G---EGNIRCFELMNERL  294 (493)
T ss_pred             C---CCeEEEEEeeCCce
Confidence            2   24677777766653

>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins

Probab=97.78  E-value=2.9e-05  Score=78.28  Aligned_cols=71  Identities=24%  Similarity=0.454  Sum_probs=47.6

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCCh
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSS  540 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~  540 (548)
                      ...|+|++. +|..|+|||+.|++.      .++.|+||..||.......  + .....|+.+||+||.+|.||=.|.-+
T Consensus        56 vy~v~f~s~-~g~~V~g~l~~P~~~------~~~~Pavv~~hGyg~~~~~--~-~~~~~~a~~G~~vl~~d~rGqg~~~~  125 (320)
T PF05448_consen   56 VYDVSFESF-DGSRVYGWLYRPKNA------KGKLPAVVQFHGYGGRSGD--P-FDLLPWAAAGYAVLAMDVRGQGGRSP  125 (320)
T ss_dssp             EEEEEEEEG-GGEEEEEEEEEES-S------SSSEEEEEEE--TT--GGG--H-HHHHHHHHTT-EEEEE--TTTSSSS-
T ss_pred             EEEEEEEcc-CCCEEEEEEEecCCC------CCCcCEEEEecCCCCCCCC--c-ccccccccCCeEEEEecCCCCCCCCC
Confidence            457899997 999999999999742      4689999999997544211  1 22346999999999999999665444


Q ss_pred             h
Q 008927          541 V  541 (548)
Q Consensus       541 ~  541 (548)
                      +
T Consensus       126 d  126 (320)
T PF05448_consen  126 D  126 (320)
T ss_dssp             B
T ss_pred             C
Confidence            4

Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.78  E-value=0.0013  Score=65.58  Aligned_cols=154  Identities=10%  Similarity=0.109  Sum_probs=86.2

Q ss_pred             eeEEECCEEEEEeCCCC-eEEEEeCCCCCCCce---ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 008927          149 AFRIFGDTVIFSNYKDQ-RLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~-~Ly~~~~~~~~~~~~---~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~  224 (548)
                      .|+.+|++|+=.+.... -||.+..++   ..+   .|...    ...+.-..||||.+.|+.- ...        ..+.
T Consensus       231 ~FS~nGkyLAsaSkD~Taiiw~v~~d~---~~kl~~tlvgh----~~~V~yi~wSPDdryLlaC-g~~--------e~~~  294 (519)
T KOG0293|consen  231 QFSHNGKYLASASKDSTAIIWIVVYDV---HFKLKKTLVGH----SQPVSYIMWSPDDRYLLAC-GFD--------EVLS  294 (519)
T ss_pred             EEcCCCeeEeeccCCceEEEEEEecCc---ceeeeeeeecc----cCceEEEEECCCCCeEEec-Cch--------Hhee
Confidence            45556666665543333 456666553   321   22211    1224456799999887663 221        2488


Q ss_pred             EEECCCCCccCcEEeeecC-Cc-eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccC
Q 008927          225 AIALNGQNIQEPKVLVSGS-DF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES  302 (548)
Q Consensus       225 ~idl~~g~~~~~~~L~~~~-~~-~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~  302 (548)
                      +.|+.+|+   .+.+.... ++ ....+|-|||.+++  . ..+     ...++..+++  |.+  ...-.+-. .  ..
T Consensus       295 lwDv~tgd---~~~~y~~~~~~S~~sc~W~pDg~~~V--~-Gs~-----dr~i~~wdlD--gn~--~~~W~gvr-~--~~  356 (519)
T KOG0293|consen  295 LWDVDTGD---LRHLYPSGLGFSVSSCAWCPDGFRFV--T-GSP-----DRTIIMWDLD--GNI--LGNWEGVR-D--PK  356 (519)
T ss_pred             eccCCcch---hhhhcccCcCCCcceeEEccCCceeE--e-cCC-----CCcEEEecCC--cch--hhcccccc-c--ce
Confidence            89999998   66655433 33 56779999999865  2 122     2457777776  321  11111100 0  23


Q ss_pred             CcCceECcCCc-EEEEE-eCCCCeeeEEEEeccCCeeEeec
Q 008927          303 PTEPKWSSKGE-LFFVT-DRKNGFWNLHKWIESNNEVLAIY  341 (548)
Q Consensus       303 ~~~~~wspDG~-L~~~s-d~~~g~~~Ly~~d~~~g~~~~l~  341 (548)
                      +...+-++||+ ++.+. |.     .+..++.++...+.+.
T Consensus       357 v~dlait~Dgk~vl~v~~d~-----~i~l~~~e~~~dr~li  392 (519)
T KOG0293|consen  357 VHDLAITYDGKYVLLVTVDK-----KIRLYNREARVDRGLI  392 (519)
T ss_pred             eEEEEEcCCCcEEEEEeccc-----ceeeechhhhhhhccc
Confidence            56778899999 65553 33     5666676554444343

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.68  E-value=0.035  Score=65.17  Aligned_cols=252  Identities=12%  Similarity=0.114  Sum_probs=129.6

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCC-CCCC--------CC-ceecceeeCCCCCEEEEEEeccCCCCCC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITP-DYGE--------PL-VSYADGIFDPRFNRYVTVREDRRQDALN  218 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~-~~~~--------~~-~~~~~~~~SpDG~~i~~v~~~~~~~~~~  218 (548)
                      ++.++++.|++.+...++|+++++++  .....+-. ...+        .. .+-..+.++++++.| ||++..      
T Consensus       574 avd~~~g~lyVaDs~n~rI~v~d~~G--~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~L-YVaDt~------  644 (1057)
T PLN02919        574 AIDLLNNRLFISDSNHNRIVVTDLDG--NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLL-YVADTE------  644 (1057)
T ss_pred             EEECCCCeEEEEECCCCeEEEEeCCC--CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEE-EEEeCC------
Confidence            44445678888887788999999876  32222211 1000        00 112346788888765 444332      


Q ss_pred             ceeEEEEEECCCCCccCcEEeeecC--------------Cce---eeeEECCCCCEEEEEEecCCCCCCCCceEEEEEec
Q 008927          219 STTEIVAIALNGQNIQEPKVLVSGS--------------DFY---AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS  281 (548)
Q Consensus       219 ~~~~l~~idl~~g~~~~~~~L~~~~--------------~~~---~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~  281 (548)
                       .+.|.++|+.++.   .+.+....              ...   ....++|++..|. ++..      ....|++++..
T Consensus       645 -n~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~Ly-Vad~------~~~~I~v~d~~  713 (1057)
T PLN02919        645 -NHALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVY-IAMA------GQHQIWEYNIS  713 (1057)
T ss_pred             -CceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEE-EEEC------CCCeEEEEECC
Confidence             2468889998876   55553210              001   2347888766554 5422      24578888876


Q ss_pred             CCCceeeeEEEcCC---------CC--CcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccc------
Q 008927          282 ENGDVYKRVCVAGF---------DP--TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD------  344 (548)
Q Consensus       282 ~~g~~~~~~~l~~~---------~~--~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~------  344 (548)
                      . +.+   ..+.+.         ..  ..........++|||+.+|++|.  +...|.++|++++..+.+....      
T Consensus       714 ~-g~v---~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D~~tg~~~~~~gg~~~~~~~  787 (1057)
T PLN02919        714 D-GVT---RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALDLKTGGSRLLAGGDPTFSDN  787 (1057)
T ss_pred             C-CeE---EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEECCCCcEEEEEecccccCcc
Confidence            3 431   122111         00  00012334679999995556665  3357888998777654332110      


Q ss_pred             -cccC---CCc---ccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecC-C-------------Ccee
Q 008927          345 -AEFS---RPL---WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI-P-------------FTDI  403 (548)
Q Consensus       345 -~d~~---~p~---w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~-~-------------~~~~  403 (548)
                       ..++   .+.   .........+.+   ++ .||++-  .+...|.++|++++.+..+.. +             +..-
T Consensus       788 l~~fG~~dG~g~~~~l~~P~Gvavd~---dG-~LYVAD--s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P  861 (1057)
T PLN02919        788 LFKFGDHDGVGSEVLLQHPLGVLCAK---DG-QIYVAD--SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP  861 (1057)
T ss_pred             cccccCCCCchhhhhccCCceeeEeC---CC-cEEEEE--CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc
Confidence             0000   000   000111233432   44 455433  345568889988887765532 1             1111


Q ss_pred             Eee--eecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          404 DNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       404 ~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      .++  ++++ ++| ++.+  ....|.++|+.+++.
T Consensus       862 ~GIavd~dG-~ly-VaDt--~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        862 AGLALGENG-RLF-VADT--NNSLIRYLDLNKGEA  892 (1057)
T ss_pred             eEEEEeCCC-CEE-EEEC--CCCEEEEEECCCCcc
Confidence            223  3444 454 4443  235788889877764

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.67  E-value=0.0077  Score=62.20  Aligned_cols=193  Identities=11%  Similarity=0.102  Sum_probs=97.6

Q ss_pred             EEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCC
Q 008927          205 YVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG  284 (548)
Q Consensus       205 i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g  284 (548)
                      |++|.+..       .+.|.+||.++.+.  ...+..+........+||||++++ +.. .      ...|.++|+.. +
T Consensus         7 l~~V~~~~-------~~~v~viD~~t~~~--~~~i~~~~~~h~~~~~s~Dgr~~y-v~~-r------dg~vsviD~~~-~   68 (369)
T PF02239_consen    7 LFYVVERG-------SGSVAVIDGATNKV--VARIPTGGAPHAGLKFSPDGRYLY-VAN-R------DGTVSVIDLAT-G   68 (369)
T ss_dssp             EEEEEEGG-------GTEEEEEETTT-SE--EEEEE-STTEEEEEE-TT-SSEEE-EEE-T------TSEEEEEETTS-S
T ss_pred             EEEEEecC-------CCEEEEEECCCCeE--EEEEcCCCCceeEEEecCCCCEEE-EEc-C------CCeEEEEECCc-c
Confidence            56665543       25899999998862  344544444456678999999865 552 2      24799999985 4


Q ss_pred             ceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccc---cccCCCcccccCcceee
Q 008927          285 DVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD---AEFSRPLWVFGINSYEI  361 (548)
Q Consensus       285 ~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~---~d~~~p~w~~~~~~~~~  361 (548)
                      ++  ...+.-+     .......+|+||+++++++...+  .+..+|.++.+.....+..   .+...+.    ......
T Consensus        69 ~~--v~~i~~G-----~~~~~i~~s~DG~~~~v~n~~~~--~v~v~D~~tle~v~~I~~~~~~~~~~~~R----v~aIv~  135 (369)
T PF02239_consen   69 KV--VATIKVG-----GNPRGIAVSPDGKYVYVANYEPG--TVSVIDAETLEPVKTIPTGGMPVDGPESR----VAAIVA  135 (369)
T ss_dssp             SE--EEEEE-S-----SEEEEEEE--TTTEEEEEEEETT--EEEEEETTT--EEEEEE--EE-TTTS-------EEEEEE
T ss_pred             cE--EEEEecC-----CCcceEEEcCCCCEEEEEecCCC--ceeEeccccccceeecccccccccccCCC----ceeEEe
Confidence            42  2223222     23456789999996666654233  6777888777654332211   0000000    001112


Q ss_pred             eeecCCCCEEEEEEEeCCeEEEEEEECCCCce---EeecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          362 IQSHGEKNLIACSYRQNGRSYLGILDDFGHSL---SLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       362 ~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~---~~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      ++   ....+++..  ....+++.+|..+.+.   +.+..+..-.. .+++++++++.....   ...+.++|.++++.
T Consensus       136 s~---~~~~fVv~l--kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~---sn~i~viD~~~~k~  206 (369)
T PF02239_consen  136 SP---GRPEFVVNL--KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG---SNKIAVIDTKTGKL  206 (369)
T ss_dssp             -S---SSSEEEEEE--TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG---GTEEEEEETTTTEE
T ss_pred             cC---CCCEEEEEE--ccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccc---cceeEEEeeccceE
Confidence            21   334344333  3345788888766532   22222211112 336777776554433   34888889877764

...

>TIGR01840 esterase_phb esterase, PHB depolymerase family

Probab=97.66  E-value=4.6e-05  Score=72.44  Aligned_cols=57  Identities=14%  Similarity=0.185  Sum_probs=40.5

Q ss_pred             EEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccC-hHHHHHHhcCcEEEEeCCCCCCCCC
Q 008927          477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTGLS  539 (548)
Q Consensus       477 g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~-~~~Q~~asrGyaVl~~NyRGStGyG  539 (548)
                      +|||.|.+  +    .+++|+||++||++......... ...++...+||+|+.||+||+.+.+
T Consensus         1 ~~ly~P~~--~----~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~   58 (212)
T TIGR01840         1 MYVYVPAG--L----TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSN   58 (212)
T ss_pred             CEEEcCCC--C----CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccC
Confidence            47899965  2    35789999999998654432211 1345555689999999999987544

This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.

>PTZ00420 coronin; Provisional

Probab=97.64  E-value=0.016  Score=62.97  Aligned_cols=155  Identities=8%  Similarity=0.010  Sum_probs=86.8

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCC-ce-------ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCce
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSS-PL-------PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNST  220 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~-~~-------~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~  220 (548)
                      .|+|+++.++.+...++.|.+.++..+ +. ..       .+...    ...+....|+|++..+++.....        
T Consensus        81 afsP~~~~lLASgS~DgtIrIWDi~t~-~~~~~~i~~p~~~L~gH----~~~V~sVaf~P~g~~iLaSgS~D--------  147 (568)
T PTZ00420         81 QFNPCFSEILASGSEDLTIRVWEIPHN-DESVKEIKDPQCILKGH----KKKISIIDWNPMNYYIMCSSGFD--------  147 (568)
T ss_pred             EEcCCCCCEEEEEeCCCeEEEEECCCC-CccccccccceEEeecC----CCcEEEEEECCCCCeEEEEEeCC--------
Confidence            577765556666666776666565431 21 11       12211    23466788999998876543321        


Q ss_pred             eEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (548)
Q Consensus       221 ~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~  300 (548)
                      ..|.++|+.+++   ........+.+....|+|||+.|+-...        ...|.+.|+.. ++.  ...+.+..    
T Consensus       148 gtIrIWDl~tg~---~~~~i~~~~~V~SlswspdG~lLat~s~--------D~~IrIwD~Rs-g~~--i~tl~gH~----  209 (568)
T PTZ00420        148 SFVNIWDIENEK---RAFQINMPKKLSSLKWNIKGNLLSGTCV--------GKHMHIIDPRK-QEI--ASSFHIHD----  209 (568)
T ss_pred             CeEEEEECCCCc---EEEEEecCCcEEEEEECCCCCEEEEEec--------CCEEEEEECCC-CcE--EEEEeccc----
Confidence            368888998886   3222223345667889999998874331        34688889874 542  22333322    


Q ss_pred             cCC-cCc----eECcCCcEEEE-EeCCCCeeeEEEEeccC
Q 008927          301 ESP-TEP----KWSSKGELFFV-TDRKNGFWNLHKWIESN  334 (548)
Q Consensus       301 ~~~-~~~----~wspDG~L~~~-sd~~~g~~~Ly~~d~~~  334 (548)
                      ... ...    .|++|++.++. ...+.....|.++|+..
T Consensus       210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence            111 112    34588884444 32212334677888753

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.61  E-value=0.033  Score=59.49  Aligned_cols=234  Identities=13%  Similarity=0.101  Sum_probs=125.4

Q ss_pred             eeEEECCEEEEEe-CCCCeEEEEeCCCCCCC---ceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 008927          149 AFRIFGDTVIFSN-YKDQRLYKHSIDSKDSS---PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (548)
Q Consensus       149 ~~~~~~~~i~F~~-~~~~~Ly~~~~~~~~~~---~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~  224 (548)
                      .|+++|..++... ++.-.+|..  .+  ..   .+.+..    ....+.+..|||||+.|+-...|         ..|.
T Consensus       166 ~fs~~g~~l~~~~~~~~i~~~~~--~~--~~~~~~~~l~~----h~~~v~~~~fs~d~~~l~s~s~D---------~tir  228 (456)
T KOG0266|consen  166 DFSPDGRALAAASSDGLIRIWKL--EG--IKSNLLRELSG----HTRGVSDVAFSPDGSYLLSGSDD---------KTLR  228 (456)
T ss_pred             EEcCCCCeEEEccCCCcEEEeec--cc--ccchhhccccc----cccceeeeEECCCCcEEEEecCC---------ceEE
Confidence            4667777766653 222234433  32  22   222211    23457788999999976664333         3577


Q ss_pred             EEEC-CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCC
Q 008927          225 AIAL-NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (548)
Q Consensus       225 ~idl-~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~  303 (548)
                      ++|+ ..+..  .+.+.....++....|+|+|+.|+-.+.        ...+.+.++.. |+  ..+.+.+..    ..+
T Consensus       229 iwd~~~~~~~--~~~l~gH~~~v~~~~f~p~g~~i~Sgs~--------D~tvriWd~~~-~~--~~~~l~~hs----~~i  291 (456)
T KOG0266|consen  229 IWDLKDDGRN--LKTLKGHSTYVTSVAFSPDGNLLVSGSD--------DGTVRIWDVRT-GE--CVRKLKGHS----DGI  291 (456)
T ss_pred             EeeccCCCeE--EEEecCCCCceEEEEecCCCCEEEEecC--------CCcEEEEeccC-Ce--EEEeeeccC----Cce
Confidence            7777 44331  4555555566778899999966653332        24577778874 54  245565554    467


Q ss_pred             cCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeE---eecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCe
Q 008927          304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL---AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR  380 (548)
Q Consensus       304 ~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~---~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~  380 (548)
                      ....+++||.++..... ++  .|..+|+.+++.+   .+...+. .. +..     ...+.|   +++.|+ +...++.
T Consensus       292 s~~~f~~d~~~l~s~s~-d~--~i~vwd~~~~~~~~~~~~~~~~~-~~-~~~-----~~~fsp---~~~~ll-~~~~d~~  357 (456)
T KOG0266|consen  292 SGLAFSPDGNLLVSASY-DG--TIRVWDLETGSKLCLKLLSGAEN-SA-PVT-----SVQFSP---NGKYLL-SASLDRT  357 (456)
T ss_pred             EEEEECCCCCEEEEcCC-Cc--cEEEEECCCCceeeeecccCCCC-CC-cee-----EEEECC---CCcEEE-EecCCCe
Confidence            77899999996555544 43  5777788788733   2221111 00 221     233443   666555 4444444


Q ss_pred             EEEEEEECCCCce-EeecCCCc---e-eEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          381 SYLGILDDFGHSL-SLLDIPFT---D-IDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       381 ~~L~~~dl~~g~~-~~l~~~~~---~-~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      .  ..+|+..+.. ........   . +......++.+.+.++.   ...|+.+++.++.
T Consensus       358 ~--~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~---d~~v~~~~~~s~~  412 (456)
T KOG0266|consen  358 L--KLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE---DGSVYVWDSSSGG  412 (456)
T ss_pred             E--EEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeC---CceEEEEeCCccc
Confidence            4  4445555543 22222111   1 12222223444444432   3578888877654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.59  E-value=0.048  Score=54.53  Aligned_cols=208  Identities=14%  Similarity=0.110  Sum_probs=114.3

Q ss_pred             ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCcee-eeEECCCCCEEEEEEecCCCCCCCCc
Q 008927          195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYA-FPRMDPRGERMAWIEWHHPNMPWDKA  273 (548)
Q Consensus       195 ~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~-~p~~SPDGk~La~~~~~~~~~p~~~~  273 (548)
                      .+.+|.||+++++. .-.      +-..+-+||++.++   .-.-..-++++. .| +.+++  +.-+..        ..
T Consensus        99 ~~~ls~dgk~~~V~-N~T------Pa~SVtVVDl~~~k---vv~ei~~PGC~~iyP-~~~~~--F~~lC~--------DG  157 (342)
T PF06433_consen   99 MFALSADGKFLYVQ-NFT------PATSVTVVDLAAKK---VVGEIDTPGCWLIYP-SGNRG--FSMLCG--------DG  157 (342)
T ss_dssp             GEEE-TTSSEEEEE-EES------SSEEEEEEETTTTE---EEEEEEGTSEEEEEE-EETTE--EEEEET--------TS
T ss_pred             ceEEccCCcEEEEE-ccC------CCCeEEEEECCCCc---eeeeecCCCEEEEEe-cCCCc--eEEEec--------CC
Confidence            46799999987553 332      34789999999987   433344555543 34 33333  333331        23


Q ss_pred             eEEEEEecCCCceeeeE-EEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecc----ccccc
Q 008927          274 ELWVGYISENGDVYKRV-CVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS----LDAEF  347 (548)
Q Consensus       274 ~L~v~~~~~~g~~~~~~-~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~----~~~d~  347 (548)
                      .+..+.++.+|+..... .+...+.+  .-+..+.++.++. ++|++-.    .++|.+++.+.+.+..-+    .+.+ 
T Consensus       158 sl~~v~Ld~~Gk~~~~~t~~F~~~~d--p~f~~~~~~~~~~~~~F~Sy~----G~v~~~dlsg~~~~~~~~~~~~t~~e-  230 (342)
T PF06433_consen  158 SLLTVTLDADGKEAQKSTKVFDPDDD--PLFEHPAYSRDGGRLYFVSYE----GNVYSADLSGDSAKFGKPWSLLTDAE-  230 (342)
T ss_dssp             CEEEEEETSTSSEEEEEEEESSTTTS---B-S--EEETTTTEEEEEBTT----SEEEEEEETTSSEEEEEEEESS-HHH-
T ss_pred             ceEEEEECCCCCEeEeeccccCCCCc--ccccccceECCCCeEEEEecC----CEEEEEeccCCcccccCcccccCccc-
Confidence            56667777667632111 12221101  2345677776655 8888765    378999986665443221    0111 


Q ss_pred             CCCcccccCcc-eeeeeecCCCCEEEEEEEe-------CCeEEEEEEECCCCc-eEeecCCCceeEe--eeecCCEEEEE
Q 008927          348 SRPLWVFGINS-YEIIQSHGEKNLIACSYRQ-------NGRSYLGILDDFGHS-LSLLDIPFTDIDN--ITLGNDCLFVE  416 (548)
Q Consensus       348 ~~p~w~~~~~~-~~~~~~~~d~~~l~~~~~~-------~g~~~L~~~dl~~g~-~~~l~~~~~~~~~--~s~d~~~l~~~  416 (548)
                      ....|-+|+-. +++.+   ..++||+....       ++-.+||++|+++++ +.++..+. .+.+  ++.+++=++|.
T Consensus       231 ~~~~WrPGG~Q~~A~~~---~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~  306 (342)
T PF06433_consen  231 KADGWRPGGWQLIAYHA---ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDKPLLYA  306 (342)
T ss_dssp             HHTTEEE-SSS-EEEET---TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-EESEEEEESSSS-EEEE
T ss_pred             cccCcCCcceeeeeecc---ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-ccceEEEccCCCcEEEE
Confidence            12467766543 34432   67788876653       246899999999986 44555432 1222  35666656665


Q ss_pred             EecCCCCCeEEEEEcCCCce
Q 008927          417 GASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       417 ~ss~~~p~~l~~~d~~~~~~  436 (548)
                      .+.  ....|+++|..+|+.
T Consensus       307 ~~~--~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  307 LSA--GDGTLDVYDAATGKL  324 (342)
T ss_dssp             EET--TTTEEEEEETTT--E
T ss_pred             EcC--CCCeEEEEeCcCCcE
Confidence            543  236899999998875

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.59  E-value=0.023  Score=60.68  Aligned_cols=198  Identities=17%  Similarity=0.169  Sum_probs=109.0

Q ss_pred             cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCc
Q 008927          194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA  273 (548)
Q Consensus       194 ~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~  273 (548)
                      ....+||||+.++....+.         .+...++.+++....+.+......+....|||||+.|+=.+        ...
T Consensus       163 ~~~~fs~~g~~l~~~~~~~---------~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s--------~D~  225 (456)
T KOG0266|consen  163 TCVDFSPDGRALAAASSDG---------LIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGS--------DDK  225 (456)
T ss_pred             EEEEEcCCCCeEEEccCCC---------cEEEeecccccchhhccccccccceeeeEECCCCcEEEEec--------CCc
Confidence            3467999999977753332         23333443332000233322333466789999999776222        245


Q ss_pred             eEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCccc
Q 008927          274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWV  353 (548)
Q Consensus       274 ~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~  353 (548)
                      .|++.|+..++.  ..+.+.+..    ..+....|+|+|++++.... ++  .+..+|..+++.........        
T Consensus       226 tiriwd~~~~~~--~~~~l~gH~----~~v~~~~f~p~g~~i~Sgs~-D~--tvriWd~~~~~~~~~l~~hs--------  288 (456)
T KOG0266|consen  226 TLRIWDLKDDGR--NLKTLKGHS----TYVTSVAFSPDGNLLVSGSD-DG--TVRIWDVRTGECVRKLKGHS--------  288 (456)
T ss_pred             eEEEeeccCCCe--EEEEecCCC----CceEEEEecCCCCEEEEecC-CC--cEEEEeccCCeEEEeeeccC--------
Confidence            788889854443  345565544    45788999999986555433 33  46666777777655443211        


Q ss_pred             ccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce---EeecCCC-c-eeEee--eecCCEEEEEEecCCCCCeE
Q 008927          354 FGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL---SLLDIPF-T-DIDNI--TLGNDCLFVEGASGVEPSSV  426 (548)
Q Consensus       354 ~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~---~~l~~~~-~-~~~~~--s~d~~~l~~~~ss~~~p~~l  426 (548)
                      .+.+..++.+   ++..|+ +...++  .|.++|+.++..   +.+.... . -+..+  +++++.++....    ...+
T Consensus       289 ~~is~~~f~~---d~~~l~-s~s~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~  358 (456)
T KOG0266|consen  289 DGISGLAFSP---DGNLLV-SASYDG--TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTL  358 (456)
T ss_pred             CceEEEEECC---CCCEEE-EcCCCc--cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeE
Confidence            1122344543   555554 444444  566778888873   2333221 1 22222  567776554432    2355


Q ss_pred             EEEEcCCCc
Q 008927          427 AKVTLDDHK  435 (548)
Q Consensus       427 ~~~d~~~~~  435 (548)
                      -.+|+..+.
T Consensus       359 ~~w~l~~~~  367 (456)
T KOG0266|consen  359 KLWDLRSGK  367 (456)
T ss_pred             EEEEccCCc
Confidence            666666554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.59  E-value=0.049  Score=63.99  Aligned_cols=211  Identities=13%  Similarity=0.140  Sum_probs=108.0

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCC-------CCCC-----Cc-eecceeeCCCCCEEEEEEeccCCC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPD-------YGEP-----LV-SYADGIFDPRFNRYVTVREDRRQD  215 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~-------~~~~-----~~-~~~~~~~SpDG~~i~~v~~~~~~~  215 (548)
                      ++.++++.||+.+....+|.++++.+  +..+.+...       .++.     .. .-.++.++|++..|++ ....   
T Consensus       630 avd~~gn~LYVaDt~n~~Ir~id~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyV-ad~~---  703 (1057)
T PLN02919        630 AYNAKKNLLYVADTENHALREIDFVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYI-AMAG---  703 (1057)
T ss_pred             EEeCCCCEEEEEeCCCceEEEEecCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEE-EECC---
Confidence            34445666777665556888888875  444443211       0000     00 1124678897666544 3321   


Q ss_pred             CCCceeEEEEEECCCCCccCcEEeeec-------------CC--ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEe
Q 008927          216 ALNSTTEIVAIALNGQNIQEPKVLVSG-------------SD--FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYI  280 (548)
Q Consensus       216 ~~~~~~~l~~idl~~g~~~~~~~L~~~-------------~~--~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~  280 (548)
                          .+.|+++|+.++.   ...+...             ..  .-....++|||++|+ ++..      ....|+++|+
T Consensus       704 ----~~~I~v~d~~~g~---v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LY-VADs------~n~~Irv~D~  769 (1057)
T PLN02919        704 ----QHQIWEYNISDGV---TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELY-IADS------ESSSIRALDL  769 (1057)
T ss_pred             ----CCeEEEEECCCCe---EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEE-EEEC------CCCeEEEEEC
Confidence                2579999988875   4333210             00  012357899999875 4422      2467999998


Q ss_pred             cCCCceeeeEEEcCCCC-------------C-----cccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecc
Q 008927          281 SENGDVYKRVCVAGFDP-------------T-----IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS  342 (548)
Q Consensus       281 ~~~g~~~~~~~l~~~~~-------------~-----~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~  342 (548)
                      +. +.   ...+.+...             +     .........+++||++ |++|.  +...|.++|++++.+..+..
T Consensus       770 ~t-g~---~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~L-YVADs--~N~rIrviD~~tg~v~tiaG  842 (1057)
T PLN02919        770 KT-GG---SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQI-YVADS--YNHKIKKLDPATKRVTTLAG  842 (1057)
T ss_pred             CC-Cc---EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcE-EEEEC--CCCEEEEEECCCCeEEEEec
Confidence            74 32   122211000             0     0011234568899975 55554  34568889988887765542


Q ss_pred             c-ccccC-----CCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce
Q 008927          343 L-DAEFS-----RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (548)
Q Consensus       343 ~-~~d~~-----~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~  393 (548)
                      . ...+.     .... .......+.+   ++ .||++-  .+...|.++|+++++.
T Consensus       843 ~G~~G~~dG~~~~a~l-~~P~GIavd~---dG-~lyVaD--t~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        843 TGKAGFKDGKALKAQL-SEPAGLALGE---NG-RLFVAD--TNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cCCcCCCCCccccccc-CCceEEEEeC---CC-CEEEEE--CCCCEEEEEECCCCcc
Confidence            1 00000     0000 0111234432   44 455432  3445677888888765

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=97.54  E-value=0.00059  Score=75.43  Aligned_cols=96  Identities=18%  Similarity=0.389  Sum_probs=65.7

Q ss_pred             CEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEe-eecCCceeeeEECCCCCEEEE-EEecCCCCCCCCceEEEEEe
Q 008927          203 NRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL-VSGSDFYAFPRMDPRGERMAW-IEWHHPNMPWDKAELWVGYI  280 (548)
Q Consensus       203 ~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L-~~~~~~~~~p~~SPDGk~La~-~~~~~~~~p~~~~~L~v~~~  280 (548)
                      .+|+|+...        ..+|..+|.++.+   .+.+ .+...-...|.|||||++||| ++...-  + ....||+.++
T Consensus       319 tkiAfv~~~--------~~~L~~~D~dG~n---~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~--~-g~s~vYv~~L  384 (912)
T TIGR02171       319 AKLAFRNDV--------TGNLAYIDYTKGA---SRAVEIEDTISVYHPDISPDGKKVAFCTGIEGL--P-GKSSVYVRNL  384 (912)
T ss_pred             eeEEEEEcC--------CCeEEEEecCCCC---ceEEEecCCCceecCcCCCCCCEEEEEEeecCC--C-CCceEEEEeh
Confidence            467887432        1389999999998   8877 666666788999999999999 653320  0 2568999999


Q ss_pred             cCCCceeeeEEEcCCCCCcccCCcCceE--CcCCc--EEEEEeC
Q 008927          281 SENGDVYKRVCVAGFDPTIVESPTEPKW--SSKGE--LFFVTDR  320 (548)
Q Consensus       281 ~~~g~~~~~~~l~~~~~~~~~~~~~~~w--spDG~--L~~~sd~  320 (548)
                      .+.|.  ....|.-      ++..-|+|  ..+|.  |+|++|.
T Consensus       385 ~t~~~--~~vkl~v------e~aaiprwrv~e~gdt~ivyv~~a  420 (912)
T TIGR02171       385 NASGS--GLVKLPV------ENAAIPRWRVLENGDTVIVYVSDA  420 (912)
T ss_pred             hccCC--CceEeec------ccccccceEecCCCCeEEEEEcCC
Confidence            87654  2222322      22334666  56776  8888765

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.54  E-value=0.0034  Score=62.68  Aligned_cols=241  Identities=12%  Similarity=0.035  Sum_probs=124.1

Q ss_pred             CCccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCC--CCccccceeeCCeeeEEECCEEEEEeCCCC
Q 008927           88 SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKE--YAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ  165 (548)
Q Consensus        88 ~~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~--~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~  165 (548)
                      ...+.-++|||.++..-..+ ++|    .++..+.+. |+.+.+-+..  +++.+.       +|.|||.+++--+ .+.
T Consensus       269 ~~~V~yi~wSPDdryLlaCg-~~e----~~~lwDv~t-gd~~~~y~~~~~~S~~sc-------~W~pDg~~~V~Gs-~dr  334 (519)
T KOG0293|consen  269 SQPVSYIMWSPDDRYLLACG-FDE----VLSLWDVDT-GDLRHLYPSGLGFSVSSC-------AWCPDGFRFVTGS-PDR  334 (519)
T ss_pred             cCceEEEEECCCCCeEEecC-chH----heeeccCCc-chhhhhcccCcCCCccee-------EEccCCceeEecC-CCC
Confidence            34555667777444322221 222    244555443 3444444432  444332       6899988754432 456


Q ss_pred             eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCc
Q 008927          166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF  245 (548)
Q Consensus       166 ~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~  245 (548)
                      +++..+++|+  ....-...   ..-++.+++.++||+.++.+..+.         .|..++.++..   .+-+.+...-
T Consensus       335 ~i~~wdlDgn--~~~~W~gv---r~~~v~dlait~Dgk~vl~v~~d~---------~i~l~~~e~~~---dr~lise~~~  397 (519)
T KOG0293|consen  335 TIIMWDLDGN--ILGNWEGV---RDPKVHDLAITYDGKYVLLVTVDK---------KIRLYNREARV---DRGLISEEQP  397 (519)
T ss_pred             cEEEecCCcc--hhhccccc---ccceeEEEEEcCCCcEEEEEeccc---------ceeeechhhhh---hhccccccCc
Confidence            8999999873  21111100   012477889999999999886553         46777877765   3424333444


Q ss_pred             eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc-CCcEEEEEeCCCCe
Q 008927          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGELFFVTDRKNGF  324 (548)
Q Consensus       246 ~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp-DG~L~~~sd~~~g~  324 (548)
                      +....+|-|||.+. +.-       ...++.+-|++. ..+  ++...|...+  ..+-.-.|.- |.+++...   +.-
T Consensus       398 its~~iS~d~k~~L-vnL-------~~qei~LWDl~e-~~l--v~kY~Ghkq~--~fiIrSCFgg~~~~fiaSG---SED  461 (519)
T KOG0293|consen  398 ITSFSISKDGKLAL-VNL-------QDQEIHLWDLEE-NKL--VRKYFGHKQG--HFIIRSCFGGGNDKFIASG---SED  461 (519)
T ss_pred             eeEEEEcCCCcEEE-EEc-------ccCeeEEeecch-hhH--HHHhhccccc--ceEEEeccCCCCcceEEec---CCC
Confidence            56678999999554 432       134677778863 221  1112221100  0000011211 11233221   223


Q ss_pred             eeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927          325 WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (548)
Q Consensus       325 ~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~  386 (548)
                      ..+|.++..+|+...+.++-        .-..+..+|+|   .+..+++++.++|.-+|+-.
T Consensus       462 ~kvyIWhr~sgkll~~LsGH--------s~~vNcVswNP---~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  462 SKVYIWHRISGKLLAVLSGH--------SKTVNCVSWNP---ADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             ceEEEEEccCCceeEeecCC--------cceeeEEecCC---CCHHHhhccCCCCeEEEecC
Confidence            46888888787764433221        11122234554   55567667777777777643

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.54  E-value=0.012  Score=59.05  Aligned_cols=235  Identities=13%  Similarity=0.089  Sum_probs=122.9

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEEC-C-EEEEEeCCCC
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-D-TVIFSNYKDQ  165 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~-~-~i~F~~~~~~  165 (548)
                      +.+....+|+ ++.++--. -   .|...+|....-   +..+..-      .....-|+..|.|.. + .|+= ...|+
T Consensus       176 rPis~~~fS~ds~~laT~s-w---sG~~kvW~~~~~---~~~~~l~------gH~~~v~~~~fhP~~~~~~lat-~s~Dg  241 (459)
T KOG0272|consen  176 RPISGCSFSRDSKHLATGS-W---SGLVKVWSVPQC---NLLQTLR------GHTSRVGAAVFHPVDSDLNLAT-ASADG  241 (459)
T ss_pred             CcceeeEeecCCCeEEEee-c---CCceeEeecCCc---ceeEEEe------ccccceeeEEEccCCCccceee-eccCC
Confidence            4455555565 44433221 1   466777766432   2222221      111123556788873 3 3433 23344


Q ss_pred             --eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927          166 --RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (548)
Q Consensus       166 --~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~  243 (548)
                        .||.++-+   .....|+..    ..|++...|.|+|+.|+-.+-|+       ..+|  +|+.++.   .-.+.+|.
T Consensus       242 tvklw~~~~e---~~l~~l~gH----~~RVs~VafHPsG~~L~TasfD~-------tWRl--WD~~tk~---ElL~QEGH  302 (459)
T KOG0272|consen  242 TVKLWKLSQE---TPLQDLEGH----LARVSRVAFHPSGKFLGTASFDS-------TWRL--WDLETKS---ELLLQEGH  302 (459)
T ss_pred             ceeeeccCCC---cchhhhhcc----hhhheeeeecCCCceeeeccccc-------chhh--cccccch---hhHhhccc
Confidence              55554432   233556654    46888999999999988766554       1234  4888886   43444554


Q ss_pred             C-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCC
Q 008927          244 D-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN  322 (548)
Q Consensus       244 ~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~  322 (548)
                      . -+...+|.|||.-++ .. ...    .-..||  |+.+ |.  ....+.+.-    ..+....|||+|..+..... +
T Consensus       303 s~~v~~iaf~~DGSL~~-tG-GlD----~~~RvW--DlRt-gr--~im~L~gH~----k~I~~V~fsPNGy~lATgs~-D  366 (459)
T KOG0272|consen  303 SKGVFSIAFQPDGSLAA-TG-GLD----SLGRVW--DLRT-GR--CIMFLAGHI----KEILSVAFSPNGYHLATGSS-D  366 (459)
T ss_pred             ccccceeEecCCCceee-cc-Ccc----chhhee--eccc-Cc--EEEEecccc----cceeeEeECCCceEEeecCC-C
Confidence            3 356789999999554 22 111    123444  6653 43  244555543    45778899999974444322 4


Q ss_pred             CeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927          323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (548)
Q Consensus       323 g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~  385 (548)
                      +...||.+.  ..+...+.+.        ...-++...+.|   ..+.+++++..++...||.
T Consensus       367 nt~kVWDLR--~r~~ly~ipA--------H~nlVS~Vk~~p---~~g~fL~TasyD~t~kiWs  416 (459)
T KOG0272|consen  367 NTCKVWDLR--MRSELYTIPA--------HSNLVSQVKYSP---QEGYFLVTASYDNTVKIWS  416 (459)
T ss_pred             CcEEEeeec--ccccceeccc--------ccchhhheEecc---cCCeEEEEcccCcceeeec
Confidence            444454432  2222111121        111112223333   4666777777777777774

>PRK10566 esterase; Provisional

Probab=97.52  E-value=0.00014  Score=70.70  Aligned_cols=55  Identities=11%  Similarity=0.051  Sum_probs=42.6

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       474 ~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      .+..+.|.|.+.     .++++|+||++||.+....  .|....+.|+++||.|+.+|+||.
T Consensus        11 ~~~~~~~~p~~~-----~~~~~p~vv~~HG~~~~~~--~~~~~~~~l~~~G~~v~~~d~~g~   65 (249)
T PRK10566         11 GIEVLHAFPAGQ-----RDTPLPTVFFYHGFTSSKL--VYSYFAVALAQAGFRVIMPDAPMH   65 (249)
T ss_pred             CcceEEEcCCCC-----CCCCCCEEEEeCCCCcccc--hHHHHHHHHHhCCCEEEEecCCcc
Confidence            355677888531     1356799999999976543  466778999999999999999985

>PRK10162 acetyl esterase; Provisional

Probab=97.45  E-value=0.0004  Score=70.38  Aligned_cols=68  Identities=19%  Similarity=0.253  Sum_probs=52.0

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccccc-CccChHHHHHHh-cCcEEEEeCCCCCCCC
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTS-RGWAFVDVNYGGSTGL  538 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~-~~~~~~~Q~~as-rGyaVl~~NyRGStGy  538 (548)
                      .+.+++++. +| .|...+|.|..        +..|+||++|||...... ..+......++. .||.|+.+|||.+..+
T Consensus        57 ~~~~~i~~~-~g-~i~~~~y~P~~--------~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~  126 (318)
T PRK10162         57 TRAYMVPTP-YG-QVETRLYYPQP--------DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA  126 (318)
T ss_pred             EEEEEEecC-CC-ceEEEEECCCC--------CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC
Confidence            566778886 77 59999999942        235999999999865433 234556677887 5999999999999874

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=97.42  E-value=0.0043  Score=65.08  Aligned_cols=199  Identities=14%  Similarity=0.169  Sum_probs=106.6

Q ss_pred             HhcCCCccCceEEcC-C-CcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEe
Q 008927           84 VSGASKRLGGTAVDG-H-GRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSN  161 (548)
Q Consensus        84 l~~~~~~~~~~~~sp-g-~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~  161 (548)
                      |++. ..+.+++|.| . .+++.-    .++|+.+||++...| ......||..             -....++.|+|+.
T Consensus       624 l~Ng-t~vtDl~WdPFD~~rLAVa----~ddg~i~lWr~~a~g-l~e~~~tPe~-------------~lt~h~eKI~slR  684 (1012)
T KOG1445|consen  624 LFNG-TLVTDLHWDPFDDERLAVA----TDDGQINLWRLTANG-LPENEMTPEK-------------ILTIHGEKITSLR  684 (1012)
T ss_pred             cccC-ceeeecccCCCChHHeeec----ccCceEEEEEeccCC-CCcccCCcce-------------eeecccceEEEEE
Confidence            4443 5566777777 3 445442    246899999997763 2333333431             2233455666664


Q ss_pred             CC------------CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927          162 YK------------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (548)
Q Consensus       162 ~~------------~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~  229 (548)
                      .-            +-.|-+-|+... ..--.|...    ...+-+++|||||++|+-|+.|.         .|.+++..
T Consensus       685 fHPLAadvLa~asyd~Ti~lWDl~~~-~~~~~l~gH----tdqIf~~AWSpdGr~~AtVcKDg---------~~rVy~Pr  750 (1012)
T KOG1445|consen  685 FHPLAADVLAVASYDSTIELWDLANA-KLYSRLVGH----TDQIFGIAWSPDGRRIATVCKDG---------TLRVYEPR  750 (1012)
T ss_pred             ecchhhhHhhhhhccceeeeeehhhh-hhhheeccC----cCceeEEEECCCCcceeeeecCc---------eEEEeCCC
Confidence            21            122222244431 122233332    12466789999999999998763         57888888


Q ss_pred             CCCccCcEEeeecCCce----eeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC-C-CceeeeEEEcCCCCCcccCC
Q 008927          230 GQNIQEPKVLVSGSDFY----AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-N-GDVYKRVCVAGFDPTIVESP  303 (548)
Q Consensus       230 ~g~~~~~~~L~~~~~~~----~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~-~-g~~~~~~~l~~~~~~~~~~~  303 (548)
                      +++    +.|.++.+-.    +-..|-=||+.|+.+..+..    ...+|-+++... + +.+. ...+.-.     .+.
T Consensus       751 s~e----~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~----SeRQv~~Y~Aq~l~~~pl~-t~~lDva-----ps~  816 (1012)
T KOG1445|consen  751 SRE----QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS----SERQVQMYDAQTLDLRPLY-TQVLDVA-----PSP  816 (1012)
T ss_pred             CCC----CccccCCCCccCcceeEEEEecCcEEEEeccccc----chhhhhhhhhhhccCCcce-eeeeccc-----Ccc
Confidence            775    5666654422    23356668887776553322    123455554332 1 1110 1111111     244


Q ss_pred             cCceECcCCcEEEEEeCCCCeeeEEE
Q 008927          304 TEPKWSSKGELFFVTDRKNGFWNLHK  329 (548)
Q Consensus       304 ~~~~wspDG~L~~~sd~~~g~~~Ly~  329 (548)
                      .-|.+.+|..++|++-+++-+-++|-
T Consensus       817 LvP~YD~Ds~~lfltGKGD~~v~~yE  842 (1012)
T KOG1445|consen  817 LVPHYDYDSNVLFLTGKGDRFVNMYE  842 (1012)
T ss_pred             ccccccCCCceEEEecCCCceEEEEE
Confidence            56788889888888876444444443

>PLN02298 hydrolase, alpha/beta fold family protein

Probab=97.40  E-value=0.00041  Score=70.68  Aligned_cols=68  Identities=15%  Similarity=0.209  Sum_probs=50.8

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +++...|++. ||.++++..+.|.+      .+...|+||++||..... ...|....+.|+++||.|+.+|+||.
T Consensus        31 ~~~~~~~~~~-dg~~l~~~~~~~~~------~~~~~~~VvllHG~~~~~-~~~~~~~~~~L~~~Gy~V~~~D~rGh   98 (330)
T PLN02298         31 KGSKSFFTSP-RGLSLFTRSWLPSS------SSPPRALIFMVHGYGNDI-SWTFQSTAIFLAQMGFACFALDLEGH   98 (330)
T ss_pred             ccccceEEcC-CCCEEEEEEEecCC------CCCCceEEEEEcCCCCCc-ceehhHHHHHHHhCCCEEEEecCCCC
Confidence            3456678887 99999999988742      123458999999986432 22344456789999999999999995

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.40  E-value=0.007  Score=61.38  Aligned_cols=254  Identities=10%  Similarity=0.073  Sum_probs=134.3

Q ss_pred             EEEEEeCCCC--eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc
Q 008927          156 TVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (548)
Q Consensus       156 ~i~F~~~~~~--~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~  233 (548)
                      .|+.+..-++  +||.+|  |  ..-..|+...- ...-+.-..|.|+|+..+|++..        +..+|.+|+.+.+ 
T Consensus       226 plllvaG~d~~lrifqvD--G--k~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~r--------rky~ysyDle~ak-  291 (514)
T KOG2055|consen  226 PLLLVAGLDGTLRIFQVD--G--KVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSGR--------RKYLYSYDLETAK-  291 (514)
T ss_pred             ceEEEecCCCcEEEEEec--C--ccChhheeeee-ccCccceeeecCCCceEEEeccc--------ceEEEEeeccccc-
Confidence            4666665555  555554  4  22234444210 01224455799999977776543        4589999999988 


Q ss_pred             cCcEEeeec----CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927          234 QEPKVLVSG----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (548)
Q Consensus       234 ~~~~~L~~~----~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws  309 (548)
                        ...|...    ......+.+|||++.|++..        ....|+++...+ +++     +......  +.+..+.|+
T Consensus       292 --~~k~~~~~g~e~~~~e~FeVShd~~fia~~G--------~~G~I~lLhakT-~el-----i~s~Kie--G~v~~~~fs  353 (514)
T KOG2055|consen  292 --VTKLKPPYGVEEKSMERFEVSHDSNFIAIAG--------NNGHIHLLHAKT-KEL-----ITSFKIE--GVVSDFTFS  353 (514)
T ss_pred             --cccccCCCCcccchhheeEecCCCCeEEEcc--------cCceEEeehhhh-hhh-----hheeeec--cEEeeEEEe
Confidence              5554322    22455678999999888654        145788887763 432     1111101  457788999


Q ss_pred             cCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEEC-
Q 008927          310 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD-  388 (548)
Q Consensus       310 pDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl-  388 (548)
                      .||+.++++.. .|  ++|.+|+..........++...       .+.+++.++   ++. ++.+..+.|.-.||-.+- 
T Consensus       354 Sdsk~l~~~~~-~G--eV~v~nl~~~~~~~rf~D~G~v-------~gts~~~S~---ng~-ylA~GS~~GiVNIYd~~s~  419 (514)
T KOG2055|consen  354 SDSKELLASGG-TG--EVYVWNLRQNSCLHRFVDDGSV-------HGTSLCISL---NGS-YLATGSDSGIVNIYDGNSC  419 (514)
T ss_pred             cCCcEEEEEcC-Cc--eEEEEecCCcceEEEEeecCcc-------ceeeeeecC---CCc-eEEeccCcceEEEeccchh
Confidence            99994444432 34  8999998766543332221111       122344443   444 334445567777775442 


Q ss_pred             -CCCceEeecCC---CceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCceeeeeeEEEecCCCCCCccCCCccCCe
Q 008927          389 -FGHSLSLLDIP---FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPE  462 (548)
Q Consensus       389 -~~g~~~~l~~~---~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~pe  462 (548)
                       .++..+++..-   -..|..+  ..|.. |+.++++ .....+-++.+..-.        +  -+ +.+.....+..+.
T Consensus       420 ~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~-~~knalrLVHvPS~T--------V--Fs-NfP~~n~~vg~vt  486 (514)
T KOG2055|consen  420 FASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASR-VKKNALRLVHVPSCT--------V--FS-NFPTSNTKVGHVT  486 (514)
T ss_pred             hccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhh-ccccceEEEecccee--------e--ec-cCCCCCCcccceE
Confidence             22344444321   1234444  44444 4444443 234445555443221        1  12 2333345566666


Q ss_pred             EEEeec
Q 008927          463 LIEFPT  468 (548)
Q Consensus       463 ~i~~~s  468 (548)
                      .+.|.-
T Consensus       487 c~aFSP  492 (514)
T KOG2055|consen  487 CMAFSP  492 (514)
T ss_pred             EEEecC
Confidence            666643

>PTZ00420 coronin; Provisional

Probab=97.38  E-value=0.054  Score=58.83  Aligned_cols=217  Identities=10%  Similarity=0.055  Sum_probs=114.0

Q ss_pred             CCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCC-CcccCCC--CCC-ccccceeeCCeeeEEECCEEEEEeC
Q 008927           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDE-PSDITPK--EYA-VRTTAQEYGGGAFRIFGDTVIFSNY  162 (548)
Q Consensus        88 ~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~-~~~lt~~--~~~-~r~~v~~ygg~~~~~~~~~i~F~~~  162 (548)
                      ...+..+.++| .+.++....   ++|...||.+...  +. ...+...  .+. ....+   ..-.|.|++..++.+..
T Consensus        74 ~~~V~~lafsP~~~~lLASgS---~DgtIrIWDi~t~--~~~~~~i~~p~~~L~gH~~~V---~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         74 TSSILDLQFNPCFSEILASGS---EDLTIRVWEIPHN--DESVKEIKDPQCILKGHKKKI---SIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             CCCEEEEEEcCCCCCEEEEEe---CCCeEEEEECCCC--CccccccccceEEeecCCCcE---EEEEECCCCCeEEEEEe
Confidence            35677888998 555554433   3577788877543  11 1111100  000 01111   12367788777776666


Q ss_pred             CCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee
Q 008927          163 KDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS  241 (548)
Q Consensus       163 ~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~  241 (548)
                      .++.|.+.|+..  ++. ..+...     ..+..+.|+|||+.|+..+.+         ..|.++|+.+++.  ...+..
T Consensus       146 ~DgtIrIWDl~t--g~~~~~i~~~-----~~V~SlswspdG~lLat~s~D---------~~IrIwD~Rsg~~--i~tl~g  207 (568)
T PTZ00420        146 FDSFVNIWDIEN--EKRAFQINMP-----KKLSSLKWNIKGNLLSGTCVG---------KHMHIIDPRKQEI--ASSFHI  207 (568)
T ss_pred             CCCeEEEEECCC--CcEEEEEecC-----CcEEEEEECCCCCEEEEEecC---------CEEEEEECCCCcE--EEEEec
Confidence            677777778875  332 233221     235677899999987665433         3688889998861  222221


Q ss_pred             cCCc-----eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEE
Q 008927          242 GSDF-----YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF  316 (548)
Q Consensus       242 ~~~~-----~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~  316 (548)
                      ..+.     ...-.|++|+++|+-...+..    ...+|.+.|+...++  ....+.... .  .....|.|.++..++|
T Consensus       208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~----~~R~VkLWDlr~~~~--pl~~~~ld~-~--~~~L~p~~D~~tg~l~  278 (568)
T PTZ00420        208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKN----NMREMKLWDLKNTTS--ALVTMSIDN-A--SAPLIPHYDESTGLIY  278 (568)
T ss_pred             ccCCceeEEEEeeeEcCCCCEEEEEEcCCC----CccEEEEEECCCCCC--ceEEEEecC-C--ccceEEeeeCCCCCEE
Confidence            1111     111235799998875553321    124688889874332  122222111 1  2233467776644334


Q ss_pred             EEeCCCCeeeEEEEeccCCeeEeec
Q 008927          317 VTDRKNGFWNLHKWIESNNEVLAIY  341 (548)
Q Consensus       317 ~sd~~~g~~~Ly~~d~~~g~~~~l~  341 (548)
                      ++-.+++  .|+.+++..+....|.
T Consensus       279 lsGkGD~--tIr~~e~~~~~~~~l~  301 (568)
T PTZ00420        279 LIGKGDG--NCRYYQHSLGSIRKVN  301 (568)
T ss_pred             EEEECCC--eEEEEEccCCcEEeec
Confidence            4333244  4555565556555554

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.34  E-value=0.015  Score=57.33  Aligned_cols=99  Identities=12%  Similarity=0.113  Sum_probs=61.3

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEE-EEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV-AIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~-~id  227 (548)
                      .|..||..++=.+..+..|-+-+++.  +.-.+|-...   ...+..+.|||||+.|++..-+.       ...|| .-.
T Consensus       202 qwn~dgt~l~tAS~gsssi~iWdpdt--g~~~pL~~~g---lgg~slLkwSPdgd~lfaAt~da-------vfrlw~e~q  269 (445)
T KOG2139|consen  202 QWNEDGTILVTASFGSSSIMIWDPDT--GQKIPLIPKG---LGGFSLLKWSPDGDVLFAATCDA-------VFRLWQENQ  269 (445)
T ss_pred             EEcCCCCEEeecccCcceEEEEcCCC--CCcccccccC---CCceeeEEEcCCCCEEEEecccc-------eeeeehhcc
Confidence            45566666665555566666667776  5556665431   23567789999999987753332       34566 222


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEec
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWH  264 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~  264 (548)
                      ..+.+   +-.+.++  ......|||+|+.|.|....
T Consensus       270 ~wt~e---rw~lgsg--rvqtacWspcGsfLLf~~sg  301 (445)
T KOG2139|consen  270 SWTKE---RWILGSG--RVQTACWSPCGSFLLFACSG  301 (445)
T ss_pred             cceec---ceeccCC--ceeeeeecCCCCEEEEEEcC
Confidence            23333   3333333  56677999999999998743

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.32  E-value=0.026  Score=60.71  Aligned_cols=158  Identities=15%  Similarity=0.129  Sum_probs=89.2

Q ss_pred             eeCCeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 008927          144 EYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (548)
Q Consensus       144 ~ygg~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l  223 (548)
                      .-|+-.|++||..|++..  .++|.++|+..+..-..++-.     ...+..++.||||..++.+.|+         .+.
T Consensus        16 r~Gnl~ft~dG~sviSPv--GNrvsv~dLknN~S~Tl~~e~-----~~NI~~ialSp~g~lllavdE~---------g~~   79 (893)
T KOG0291|consen   16 RAGNLVFTKDGNSVISPV--GNRVSVFDLKNNKSYTLPLET-----RYNITRIALSPDGTLLLAVDER---------GRA   79 (893)
T ss_pred             ecCcEEECCCCCEEEecc--CCEEEEEEccCCcceeEEeec-----CCceEEEEeCCCceEEEEEcCC---------CcE
Confidence            335567888888888876  678999999753122223322     3467788999999988887443         234


Q ss_pred             EEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCce---eeeEEEcCCCCCcc
Q 008927          224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV---YKRVCVAGFDPTIV  300 (548)
Q Consensus       224 ~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~---~~~~~l~~~~~~~~  300 (548)
                      ..+++.....  ...+. ...-+....|||||+.+|....+       --+||..+-.-.+++   ...+...+..    
T Consensus        80 ~lvs~~~r~V--lh~f~-fk~~v~~i~fSPng~~fav~~gn-------~lqiw~~P~~~~~~~~pFvl~r~~~g~f----  145 (893)
T KOG0291|consen   80 LLVSLLSRSV--LHRFN-FKRGVGAIKFSPNGKFFAVGCGN-------LLQIWHAPGEIKNEFNPFVLHRTYLGHF----  145 (893)
T ss_pred             EEEeccccee--eEEEe-ecCccceEEECCCCcEEEEEecc-------eeEEEecCcchhcccCcceEeeeecCCc----
Confidence            4455543320  11112 22235667899999998844311       234554432111111   1122233332    


Q ss_pred             cCCcCceECcCCcEEEEEeCCCCeeeEEEEec
Q 008927          301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE  332 (548)
Q Consensus       301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~  332 (548)
                      ..+....||.|.+++.+..+ +-...|+-++.
T Consensus       146 ddi~si~Ws~DSr~l~~gsr-D~s~rl~~v~~  176 (893)
T KOG0291|consen  146 DDITSIDWSDDSRLLVTGSR-DLSARLFGVDG  176 (893)
T ss_pred             cceeEEEeccCCceEEeccc-cceEEEEEecc
Confidence            35677899999986666444 33345665553

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=97.31  E-value=0.17  Score=48.34  Aligned_cols=192  Identities=13%  Similarity=0.140  Sum_probs=103.4

Q ss_pred             CEEEEEeCCCCeEEEEeCCCCCCCc--eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCC
Q 008927          155 DTVIFSNYKDQRLYKHSIDSKDSSP--LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (548)
Q Consensus       155 ~~i~F~~~~~~~Ly~~~~~~~~~~~--~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~  232 (548)
                      +.|+.+...+..|-..+..+. ..-  +.++.+.  ....+...+|||.|+.|+.-+-+.       ...||.  -..++
T Consensus        27 g~ilAscg~Dk~vriw~~~~~-~s~~ck~vld~~--hkrsVRsvAwsp~g~~La~aSFD~-------t~~Iw~--k~~~e   94 (312)
T KOG0645|consen   27 GVILASCGTDKAVRIWSTSSG-DSWTCKTVLDDG--HKRSVRSVAWSPHGRYLASASFDA-------TVVIWK--KEDGE   94 (312)
T ss_pred             ceEEEeecCCceEEEEecCCC-CcEEEEEecccc--chheeeeeeecCCCcEEEEeeccc-------eEEEee--cCCCc
Confidence            456666655655555555420 122  2222221  122356778999999776644332       123332  22232


Q ss_pred             ccCcEEe--eecCCc-eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927          233 IQEPKVL--VSGSDF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (548)
Q Consensus       233 ~~~~~~L--~~~~~~-~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws  309 (548)
                         -+.+  .+|.+. +-..+||++|.+||-.+++        ..+|+..++.++++.-.-+|.+..    ..+-...|.
T Consensus        95 ---fecv~~lEGHEnEVK~Vaws~sG~~LATCSRD--------KSVWiWe~deddEfec~aVL~~Ht----qDVK~V~WH  159 (312)
T KOG0645|consen   95 ---FECVATLEGHENEVKCVAWSASGNYLATCSRD--------KSVWIWEIDEDDEFECIAVLQEHT----QDVKHVIWH  159 (312)
T ss_pred             ---eeEEeeeeccccceeEEEEcCCCCEEEEeeCC--------CeEEEEEecCCCcEEEEeeecccc----ccccEEEEc
Confidence               2222  344433 5567899999999966633        358888887656543334454443    457788999


Q ss_pred             cCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927          310 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (548)
Q Consensus       310 pDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~  385 (548)
                      |--.|+|.... ++.-.+|+-.. ++..+.+...+ ....-.|..     .|.+   .|.+|+ +..+++.-.|++
T Consensus       160 Pt~dlL~S~SY-DnTIk~~~~~~-dddW~c~~tl~-g~~~TVW~~-----~F~~---~G~rl~-s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  160 PTEDLLFSCSY-DNTIKVYRDED-DDDWECVQTLD-GHENTVWSL-----AFDN---IGSRLV-SCSDDGTVSIWR  223 (312)
T ss_pred             CCcceeEEecc-CCeEEEEeecC-CCCeeEEEEec-CccceEEEE-----EecC---CCceEE-EecCCcceEeee
Confidence            97558888665 45556666553 44333221111 111234542     3432   566665 455677777777

>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc

Probab=97.31  E-value=0.00037  Score=75.26  Aligned_cols=63  Identities=29%  Similarity=0.385  Sum_probs=45.3

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhc-C-cEEEEeCCC-CCCCCChhh
Q 008927          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-G-WAFVDVNYG-GSTGLSSVP  542 (548)
Q Consensus       475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asr-G-yaVl~~NyR-GStGyG~~f  542 (548)
                      ++--+|.|.+..    +++++|+||+||||+......... ....|+.+ + ++|+.+||| |..||+...
T Consensus        79 l~l~i~~p~~~~----~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~  144 (493)
T cd00312          79 LYLNVYTPKNTK----PGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTG  144 (493)
T ss_pred             CeEEEEeCCCCC----CCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCC
Confidence            667788886421    256789999999999865444333 33556654 3 999999999 999987543

) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.

>TIGR00976 /NonD putative hydrolase, CocE/NonD family

Probab=97.26  E-value=0.00053  Score=75.01  Aligned_cols=65  Identities=17%  Similarity=0.262  Sum_probs=47.1

Q ss_pred             eccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccc-cCccC-hHHHHHHhcCcEEEEeCCCCCCCCC
Q 008927          467 PTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILN-LSIQYWTSRGWAFVDVNYGGSTGLS  539 (548)
Q Consensus       467 ~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~-~~~~~-~~~Q~~asrGyaVl~~NyRGStGyG  539 (548)
                      +.+ ||.++++.+|.|++       .++.|+||++||-..... ...+. ...++|+++||+|+.+|+||..+-+
T Consensus         2 ~~~-DG~~L~~~~~~P~~-------~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~   68 (550)
T TIGR00976         2 PMR-DGTRLAIDVYRPAG-------GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASE   68 (550)
T ss_pred             cCC-CCCEEEEEEEecCC-------CCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCC
Confidence            455 99999999999963       347899999997432211 01122 3457899999999999999976543

This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=97.25  E-value=0.013  Score=60.18  Aligned_cols=217  Identities=10%  Similarity=0.018  Sum_probs=107.6

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCC------CccccceeeCCeeeEEECCEEEEEe
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEY------AVRTTAQEYGGGAFRIFGDTVIFSN  161 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~------~~r~~v~~ygg~~~~~~~~~i~F~~  161 (548)
                      -.+..+++|| |+.|..+....      ..-.++.+| -+..+..-++.      +-...+.+.--|.|.|+....+.+.
T Consensus       215 h~i~sl~ys~Tg~~iLvvsg~a------qakl~DRdG-~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~  287 (641)
T KOG0772|consen  215 HQINSLQYSVTGDQILVVSGSA------QAKLLDRDG-FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC  287 (641)
T ss_pred             cccceeeecCCCCeEEEEecCc------ceeEEccCC-ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe
Confidence            3456678888 88888886432      222222222 12221111111      1122233333467888877666665


Q ss_pred             CCCC--eEEEEeCCCCCCCceecCCCC-CCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE
Q 008927          162 YKDQ--RLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV  238 (548)
Q Consensus       162 ~~~~--~Ly~~~~~~~~~~~~~lT~~~-~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~  238 (548)
                      ..|+  +||-++-..  .+.+.+.+.. +...+......|+|||++|+.-+.+.         .|-.++..+-... +..
T Consensus       288 s~DgtlRiWdv~~~k--~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG---------SIQ~W~~~~~~v~-p~~  355 (641)
T KOG0772|consen  288 SYDGTLRIWDVNNTK--SQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG---------SIQIWDKGSRTVR-PVM  355 (641)
T ss_pred             cCCCcEEEEecCCch--hheeEEeeccCCCcccCceeeecCCCcchhhhcccCC---------ceeeeecCCcccc-cce
Confidence            5555  677655332  3333332211 11123355778999999988765543         3334443222100 222


Q ss_pred             eee----cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcE
Q 008927          239 LVS----GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL  314 (548)
Q Consensus       239 L~~----~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L  314 (548)
                      ...    ...-.....||+||++|+  ++..      ...|-+.|+..-.+  .....++-...  ..-....||||.+|
T Consensus       356 ~vk~AH~~g~~Itsi~FS~dg~~Ll--SRg~------D~tLKvWDLrq~kk--pL~~~tgL~t~--~~~tdc~FSPd~kl  423 (641)
T KOG0772|consen  356 KVKDAHLPGQDITSISFSYDGNYLL--SRGF------DDTLKVWDLRQFKK--PLNVRTGLPTP--FPGTDCCFSPDDKL  423 (641)
T ss_pred             EeeeccCCCCceeEEEeccccchhh--hccC------CCceeeeecccccc--chhhhcCCCcc--CCCCccccCCCceE
Confidence            211    111256778999999987  2222      12355556653222  11111111100  22356789999998


Q ss_pred             EEEEe---CCCCeeeEEEEeccCCe
Q 008927          315 FFVTD---RKNGFWNLHKWIESNNE  336 (548)
Q Consensus       315 ~~~sd---~~~g~~~Ly~~d~~~g~  336 (548)
                      ++...   ++.+...|+.+|..+=+
T Consensus       424 i~TGtS~~~~~~~g~L~f~d~~t~d  448 (641)
T KOG0772|consen  424 ILTGTSAPNGMTAGTLFFFDRMTLD  448 (641)
T ss_pred             EEecccccCCCCCceEEEEecccee
Confidence            77621   22334478888865433

>PRK13604 luxD acyl transferase; Provisional

Probab=97.22  E-value=0.00085  Score=66.60  Aligned_cols=62  Identities=15%  Similarity=0.151  Sum_probs=47.1

Q ss_pred             eeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       466 ~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ..+. ||.++.||+.+|.+.     ..++.|+||..||= +... ..|...+.+|+++||+|+..|+||+
T Consensus        14 ~~~~-dG~~L~Gwl~~P~~~-----~~~~~~~vIi~HGf-~~~~-~~~~~~A~~La~~G~~vLrfD~rg~   75 (307)
T PRK13604         14 ICLE-NGQSIRVWETLPKEN-----SPKKNNTILIASGF-ARRM-DHFAGLAEYLSSNGFHVIRYDSLHH   75 (307)
T ss_pred             EEcC-CCCEEEEEEEcCccc-----CCCCCCEEEEeCCC-CCCh-HHHHHHHHHHHHCCCEEEEecCCCC
Confidence            5666 999999999999641     14577999999982 1111 1266678899999999999998764

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.18  E-value=0.0011  Score=44.27  Aligned_cols=38  Identities=16%  Similarity=0.247  Sum_probs=25.3

Q ss_pred             EEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEE
Q 008927          237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWV  277 (548)
Q Consensus       237 ~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v  277 (548)
                      ++++........|.|||||++|+|++....   -...+||+
T Consensus         2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~---~g~~diy~   39 (39)
T PF07676_consen    2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRND---RGSFDIYV   39 (39)
T ss_dssp             EEES-SSSSEEEEEE-TTSSEEEEEEECT-----SSEEEEE
T ss_pred             cCcccCCccccCEEEecCCCEEEEEecCCC---CCCcCEEC
Confidence            466666666789999999999999984431   12456764

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated

Probab=97.17  E-value=0.0011  Score=65.71  Aligned_cols=64  Identities=16%  Similarity=0.289  Sum_probs=48.2

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCc--cChHHHHHHhcCcEEEEeCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI--LNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~--~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      |.+.|+.  +|.++.|+++.|.++        +.|.||++|||+....+..  +......|+++||.|+.+|+||-
T Consensus         3 ~~~~~~~--~~~~l~g~~~~p~~~--------~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~   68 (274)
T TIGR03100         3 RALTFSC--EGETLVGVLHIPGAS--------HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGM   68 (274)
T ss_pred             eeEEEEc--CCcEEEEEEEcCCCC--------CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCC
Confidence            4677876  688999999999541        2367888899987655432  22346789999999999999973

This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=97.15  E-value=0.032  Score=59.30  Aligned_cols=168  Identities=13%  Similarity=0.167  Sum_probs=91.6

Q ss_pred             eecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEE
Q 008927          240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT  318 (548)
Q Consensus       240 ~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~s  318 (548)
                      +.+..++...++||||++|++..         -.++.++.+..++.+ ..+.+.... -.........|+-|+. +++++
T Consensus       379 ~k~~~nIs~~aiSPdg~~Ia~st---------~~~~~iy~L~~~~~v-k~~~v~~~~-~~~~~a~~i~ftid~~k~~~~s  447 (691)
T KOG2048|consen  379 TKEKENISCAAISPDGNLIAIST---------VSRTKIYRLQPDPNV-KVINVDDVP-LALLDASAISFTIDKNKLFLVS  447 (691)
T ss_pred             cCCccceeeeccCCCCCEEEEee---------ccceEEEEeccCcce-eEEEeccch-hhhccceeeEEEecCceEEEEe
Confidence            44555677778999999999754         123444444443332 223332221 0002456678898988 55555


Q ss_pred             eCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecC
Q 008927          319 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI  398 (548)
Q Consensus       319 d~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~  398 (548)
                      .. .  ..|..+.+++...+.+......    .-....+....++   +|++|++..   ....|+++++++++.+.|..
T Consensus       448 ~~-~--~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~Ss---dG~yiaa~~---t~g~I~v~nl~~~~~~~l~~  514 (691)
T KOG2048|consen  448 KN-I--FSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSS---DGNYIAAIS---TRGQIFVYNLETLESHLLKV  514 (691)
T ss_pred             cc-c--ceeEEEEecCcchhhhhccccc----cCCCcceeEEEcC---CCCEEEEEe---ccceEEEEEcccceeecchh
Confidence            21 2  3455555555544444321100    0011222334443   899887654   56789999999988776652


Q ss_pred             -CCceeEe--ee-ecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          399 -PFTDIDN--IT-LGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       399 -~~~~~~~--~s-~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                       ....+..  +. .+-+++++..++    .++|.+|++..+
T Consensus       515 rln~~vTa~~~~~~~~~~lvvats~----nQv~efdi~~~~  551 (691)
T KOG2048|consen  515 RLNIDVTAAAFSPFVRNRLVVATSN----NQVFEFDIEARN  551 (691)
T ss_pred             ccCcceeeeeccccccCcEEEEecC----CeEEEEecchhh
Confidence             2222322  24 344566655443    578888885443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=97.14  E-value=0.29  Score=47.70  Aligned_cols=246  Identities=15%  Similarity=0.134  Sum_probs=125.0

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCe--eeEEECCEEEEEeC-CC
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGG--AFRIFGDTVIFSNY-KD  164 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~--~~~~~~~~i~F~~~-~~  164 (548)
                      ..+..+..++ |..+.- ..   ++....|+-...+  ...+-+..+         .||--  .|.-+...+++.+. .+
T Consensus        15 ~~i~sl~fs~~G~~lit-ss---~dDsl~LYd~~~g--~~~~ti~sk---------kyG~~~~~Fth~~~~~i~sStk~d   79 (311)
T KOG1446|consen   15 GKINSLDFSDDGLLLIT-SS---EDDSLRLYDSLSG--KQVKTINSK---------KYGVDLACFTHHSNTVIHSSTKED   79 (311)
T ss_pred             CceeEEEecCCCCEEEE-ec---CCCeEEEEEcCCC--ceeeEeecc---------cccccEEEEecCCceEEEccCCCC
Confidence            4566667776 555533 21   2345666655332  123333323         34332  34444556666553 35


Q ss_pred             CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC
Q 008927          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD  244 (548)
Q Consensus       165 ~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~  244 (548)
                      ..|-.+++..  ..-.+-.++   ...++..+..+|-++..+-.+.|         ..|..+|+...+   -+-+..-..
T Consensus        80 ~tIryLsl~d--NkylRYF~G---H~~~V~sL~~sP~~d~FlS~S~D---------~tvrLWDlR~~~---cqg~l~~~~  142 (311)
T KOG1446|consen   80 DTIRYLSLHD--NKYLRYFPG---HKKRVNSLSVSPKDDTFLSSSLD---------KTVRLWDLRVKK---CQGLLNLSG  142 (311)
T ss_pred             CceEEEEeec--CceEEEcCC---CCceEEEEEecCCCCeEEecccC---------CeEEeeEecCCC---CceEEecCC
Confidence            5777777765  222233332   13467778899987654333222         357777888665   333322111


Q ss_pred             ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC--CCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCC
Q 008927          245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN  322 (548)
Q Consensus       245 ~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~--~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~  322 (548)
                       -.-.+++|+|-.+|- . ..      ...|-++|+..  .|... ...+...+ .  .......|||||+.+++++. .
T Consensus       143 -~pi~AfDp~GLifA~-~-~~------~~~IkLyD~Rs~dkgPF~-tf~i~~~~-~--~ew~~l~FS~dGK~iLlsT~-~  208 (311)
T KOG1446|consen  143 -RPIAAFDPEGLIFAL-A-NG------SELIKLYDLRSFDKGPFT-TFSITDND-E--AEWTDLEFSPDGKSILLSTN-A  208 (311)
T ss_pred             -CcceeECCCCcEEEE-e-cC------CCeEEEEEecccCCCCce-eEccCCCC-c--cceeeeEEcCCCCEEEEEeC-C
Confidence             123478999965552 2 22      23688888764  23221 11222121 1  34567899999995455544 2


Q ss_pred             CeeeEEEEeccCCeeEeeccc-ccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE
Q 008927          323 GFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS  394 (548)
Q Consensus       323 g~~~Ly~~d~~~g~~~~l~~~-~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~  394 (548)
                      +  .+|.+|.=+|.+..-... ......|    .  ...+.|   |++.|+ ....+|+-  +++++++|...
T Consensus       209 s--~~~~lDAf~G~~~~tfs~~~~~~~~~----~--~a~ftP---ds~Fvl-~gs~dg~i--~vw~~~tg~~v  267 (311)
T KOG1446|consen  209 S--FIYLLDAFDGTVKSTFSGYPNAGNLP----L--SATFTP---DSKFVL-SGSDDGTI--HVWNLETGKKV  267 (311)
T ss_pred             C--cEEEEEccCCcEeeeEeeccCCCCcc----e--eEEECC---CCcEEE-EecCCCcE--EEEEcCCCcEe
Confidence            3  577888777775322111 1111111    1  123444   666554 44445654  45566777644

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.12  E-value=0.055  Score=52.08  Aligned_cols=226  Identities=12%  Similarity=0.068  Sum_probs=119.5

Q ss_pred             eeEEEC-CEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFG-DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~-~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      .+.|.- ..|+|...-.+--+++|.++. .+++.++..+  ..-.|...+|||||.+|+.. |+.-+   ..+.-|-++|
T Consensus        74 ~~~p~~~ravafARrPGtf~~vfD~~~~-~~pv~~~s~~--~RHfyGHGvfs~dG~~LYAT-Endfd---~~rGViGvYd  146 (366)
T COG3490          74 AFHPALPRAVAFARRPGTFAMVFDPNGA-QEPVTLVSQE--GRHFYGHGVFSPDGRLLYAT-ENDFD---PNRGVIGVYD  146 (366)
T ss_pred             ecCCCCcceEEEEecCCceEEEECCCCC-cCcEEEeccc--CceeecccccCCCCcEEEee-cCCCC---CCCceEEEEe
Confidence            455543 368887655567788999873 5666666653  23346777899999988776 44322   2456777778


Q ss_pred             CCCCCccCcEEeeecCCce---eeeEECCCCCEEEEEEe---cCCCC-----CC--CCceEEEEEecCCCceeeeEEEcC
Q 008927          228 LNGQNIQEPKVLVSGSDFY---AFPRMDPRGERMAWIEW---HHPNM-----PW--DKAELWVGYISENGDVYKRVCVAG  294 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~---~~p~~SPDGk~La~~~~---~~~~~-----p~--~~~~L~v~~~~~~g~~~~~~~l~~  294 (548)
                      ...+    ..++.+-+.+-   -...|.+||+.|+...-   .+|+.     .-  ....|.+++.. +|.+-++..+..
T Consensus       147 ~r~~----fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a-tG~liekh~Lp~  221 (366)
T COG3490         147 AREG----FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA-TGNLIEKHTLPA  221 (366)
T ss_pred             cccc----cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecc-ccchhhhccCch
Confidence            7754    34554433221   23479999999884421   23321     11  12356677755 465434444443


Q ss_pred             CCCCcccCCcCceECcCCcEEEEEeC-C--CCeeeEEEEeccCCeeEeec-ccccccCCCcccccCcceeeeeecCCCCE
Q 008927          295 FDPTIVESPTEPKWSSKGELFFVTDR-K--NGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNL  370 (548)
Q Consensus       295 ~~~~~~~~~~~~~wspDG~L~~~sd~-~--~g~~~Ly~~d~~~g~~~~l~-~~~~d~~~p~w~~~~~~~~~~~~~~d~~~  370 (548)
                      ....  .++....-.+||+++|-+.. +  ++...|.-+-..++..+.+- +++.......++   .+.+...   +.+.
T Consensus       222 ~l~~--lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYi---gsiA~n~---~~gl  293 (366)
T COG3490         222 SLRQ--LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYI---GSIAANR---RDGL  293 (366)
T ss_pred             hhhh--cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhh---hheeecc---cCCe
Confidence            2211  46667778899998776532 1  33344544433333333332 111000000111   0122221   2344


Q ss_pred             EEEEEEeCCeEEEEEEECCCCceEee
Q 008927          371 IACSYRQNGRSYLGILDDFGHSLSLL  396 (548)
Q Consensus       371 l~~~~~~~g~~~L~~~dl~~g~~~~l  396 (548)
                      +. .....|.. ..++|.++|.+...
T Consensus       294 V~-lTSP~GN~-~vi~da~tG~vv~~  317 (366)
T COG3490         294 VA-LTSPRGNR-AVIWDAATGAVVSE  317 (366)
T ss_pred             EE-EecCCCCe-EEEEEcCCCcEEec
Confidence            44 33444433 45779999987644

>TIGR02821 fghA_ester_D S-formylglutathione hydrolase

Probab=97.10  E-value=0.0013  Score=65.10  Aligned_cols=70  Identities=16%  Similarity=0.174  Sum_probs=49.2

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHH-hcCcEEEEeCC--CCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT-SRGWAFVDVNY--GGST  536 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~a-srGyaVl~~Ny--RGSt  536 (548)
                      +..+|.+..-+.++.-.+|.|.+  +.   .+++|+|+++||.+.......+....+.|+ ..||+|+.||.  ||+.
T Consensus        14 ~~~~~~s~~~~~~~~~~v~~P~~--~~---~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~   86 (275)
T TIGR02821        14 GFYRHKSETCGVPMTFGVFLPPQ--AA---AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTG   86 (275)
T ss_pred             EEEEEeccccCCceEEEEEcCCC--cc---CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCC
Confidence            45666664356778899999964  32   356899999999986655443333455565 57999999997  7653

This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=97.06  E-value=0.61  Score=50.40  Aligned_cols=218  Identities=8%  Similarity=-0.036  Sum_probs=117.3

Q ss_pred             ceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927          191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (548)
Q Consensus       191 ~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~  270 (548)
                      ...+.+..|||++.+++.....+    ..+..|-+.||.+|+   .. ...-.+......|.+|++.|.|+..+...   
T Consensus       129 ~~Lg~~~~s~D~~~la~s~D~~G----~e~y~lr~kdL~tg~---~~-~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~---  197 (682)
T COG1770         129 FSLGAASISPDHNLLAYSVDVLG----DEQYTLRFKDLATGE---EL-PDEITNTSGSFAWAADGKTLFYTRLDENH---  197 (682)
T ss_pred             eeeeeeeeCCCCceEEEEEeccc----ccEEEEEEEeccccc---cc-chhhcccccceEEecCCCeEEEEEEcCCC---
Confidence            45678889999999988644332    246788899999997   21 11112223456899999999999854332   


Q ss_pred             CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCC--eeEeecccccccC
Q 008927          271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN--EVLAIYSLDAEFS  348 (548)
Q Consensus       271 ~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g--~~~~l~~~~~d~~  348 (548)
                      .-.+||...+.+...  .-+++..+...  .......=+.+.+.++++-.+....++++++.+..  +.+.+.+.+.++.
T Consensus       198 rp~kv~~h~~gt~~~--~d~lvyeE~d~--~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~e  273 (682)
T COG1770         198 RPDKVWRHRLGTPGS--SDELVYEEKDD--RFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVE  273 (682)
T ss_pred             CcceEEEEecCCCCC--cceEEEEcCCC--cEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcE
Confidence            235788877764222  22333332201  11122222444453443221123345666665443  3444544321111


Q ss_pred             CCcccccCcceeeeeecCCCCEEEEEEEeCC-eEEEEEEEC--CCCceEeecC--CCceeEeeeecCCEEEEEEecCCCC
Q 008927          349 RPLWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYLGILDD--FGHSLSLLDI--PFTDIDNITLGNDCLFVEGASGVEP  423 (548)
Q Consensus       349 ~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g-~~~L~~~dl--~~g~~~~l~~--~~~~~~~~s~d~~~l~~~~ss~~~p  423 (548)
                                |...   ..++.+|+..+.+| ...|+....  ....++.+..  +..-+.++..-.++|++... ....
T Consensus       274 ----------Y~~e---h~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR-~~gl  339 (682)
T COG1770         274 ----------YSVE---HGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLER-QEGL  339 (682)
T ss_pred             ----------Eeee---ecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEec-ccCC
Confidence                      2221   14567777777666 556766554  1123443332  22235555555666665554 3556


Q ss_pred             CeEEEEEcCCCcee
Q 008927          424 SSVAKVTLDDHKLK  437 (548)
Q Consensus       424 ~~l~~~d~~~~~~~  437 (548)
                      +.|++.+.++++..
T Consensus       340 p~v~v~~~~~~~~~  353 (682)
T COG1770         340 PRVVVRDRKTGEER  353 (682)
T ss_pred             ceEEEEecCCCcee
Confidence            78888888776644

>PLN02442 S-formylglutathione hydrolase

Probab=97.05  E-value=0.0014  Score=65.25  Aligned_cols=68  Identities=18%  Similarity=0.111  Sum_probs=47.3

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChH-HHHHHhcCcEEEEeCCC
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLS-IQYWTSRGWAFVDVNYG  533 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~-~Q~~asrGyaVl~~NyR  533 (548)
                      .+.+++.|..-|..+.-.+|.|.+   .  +++++|+|+++||++........... .++++.+||+|+.||..
T Consensus        18 ~~~~~~~s~~l~~~~~~~vy~P~~---~--~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~   86 (283)
T PLN02442         18 NRRYKHFSSTLGCSMTFSVYFPPA---S--DSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTS   86 (283)
T ss_pred             EEEEEEeccccCCceEEEEEcCCc---c--cCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCC
Confidence            355666664257789999999952   1  25789999999998865543322222 35567789999999964

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=97.04  E-value=0.41  Score=47.61  Aligned_cols=186  Identities=10%  Similarity=0.065  Sum_probs=100.1

Q ss_pred             CCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCc
Q 008927          112 AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLV  191 (548)
Q Consensus       112 ~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~  191 (548)
                      +.+--||....+  ..+-+||...-+|-..       .|+-||. ++-+-+-++.|.+...+.+ ++...|...    ..
T Consensus        85 DD~AflW~~~~g--e~~~eltgHKDSVt~~-------~Fshdgt-lLATGdmsG~v~v~~~stg-~~~~~~~~e----~~  149 (399)
T KOG0296|consen   85 DDLAFLWDISTG--EFAGELTGHKDSVTCC-------SFSHDGT-LLATGDMSGKVLVFKVSTG-GEQWKLDQE----VE  149 (399)
T ss_pred             CceEEEEEccCC--cceeEecCCCCceEEE-------EEccCce-EEEecCCCccEEEEEcccC-ceEEEeecc----cC
Confidence            345566766443  3456666543333221       3554543 3334445566666666652 333444311    12


Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCc-eeeeEECCCCCEEEEEEecCCCCCC
Q 008927          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF-YAFPRMDPRGERMAWIEWHHPNMPW  270 (548)
Q Consensus       192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~-~~~p~~SPDGk~La~~~~~~~~~p~  270 (548)
                      .+.-+.|.|-+..+++-+++         ..||.+.+..+.   .-++..|... ...-.+.||||+|+-.. +      
T Consensus       150 dieWl~WHp~a~illAG~~D---------GsvWmw~ip~~~---~~kv~~Gh~~~ct~G~f~pdGKr~~tgy-~------  210 (399)
T KOG0296|consen  150 DIEWLKWHPRAHILLAGSTD---------GSVWMWQIPSQA---LCKVMSGHNSPCTCGEFIPDGKRILTGY-D------  210 (399)
T ss_pred             ceEEEEecccccEEEeecCC---------CcEEEEECCCcc---eeeEecCCCCCcccccccCCCceEEEEe-c------
Confidence            34557899988877765433         468888888855   5566655433 44557999999997443 2      


Q ss_pred             CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeec
Q 008927          271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (548)
Q Consensus       271 ~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~  341 (548)
                       ...|.+.++.. |.  ....+.+.. .  ........+.+|.+++..++ .+  ..+.++..+|++....
T Consensus       211 -dgti~~Wn~kt-g~--p~~~~~~~e-~--~~~~~~~~~~~~~~~~~g~~-e~--~~~~~~~~sgKVv~~~  271 (399)
T KOG0296|consen  211 -DGTIIVWNPKT-GQ--PLHKITQAE-G--LELPCISLNLAGSTLTKGNS-EG--VACGVNNGSGKVVNCN  271 (399)
T ss_pred             -CceEEEEecCC-Cc--eeEEecccc-c--CcCCccccccccceeEeccC-Cc--cEEEEccccceEEEec
Confidence             34677778774 53  222233221 1  12223344556665555554 33  3445555566655443

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=97.02  E-value=0.041  Score=54.75  Aligned_cols=147  Identities=15%  Similarity=0.178  Sum_probs=84.2

Q ss_pred             eeEEECCEEEEEeCCCC--eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~--~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      +|+|+|..|+=-+ .|.  +||  |+++  ..|  +..-++ ..--+.-.+|||||++|+--+.+         +.|-.+
T Consensus       122 ~fsp~g~~l~tGs-GD~TvR~W--D~~T--eTp--~~t~Kg-H~~WVlcvawsPDgk~iASG~~d---------g~I~lw  184 (480)
T KOG0271|consen  122 QFSPTGSRLVTGS-GDTTVRLW--DLDT--ETP--LFTCKG-HKNWVLCVAWSPDGKKIASGSKD---------GSIRLW  184 (480)
T ss_pred             EecCCCceEEecC-CCceEEee--ccCC--CCc--ceeecC-CccEEEEEEECCCcchhhccccC---------CeEEEe
Confidence            5778777776543 333  677  4443  222  211110 11234567899999998775433         478889


Q ss_pred             ECCCCCccCcEEeeecCCceeeeEE-----CCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCccc
Q 008927          227 ALNGQNIQEPKVLVSGSDFYAFPRM-----DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE  301 (548)
Q Consensus       227 dl~~g~~~~~~~L~~~~~~~~~p~~-----SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~  301 (548)
                      |..+|+. .-+.|......+...+|     .|++++||=.+  .      ...+.+-|+.. |.  ..+++.+..    .
T Consensus       185 dpktg~~-~g~~l~gH~K~It~Lawep~hl~p~~r~las~s--k------Dg~vrIWd~~~-~~--~~~~lsgHT----~  248 (480)
T KOG0271|consen  185 DPKTGQQ-IGRALRGHKKWITALAWEPLHLVPPCRRLASSS--K------DGSVRIWDTKL-GT--CVRTLSGHT----A  248 (480)
T ss_pred             cCCCCCc-ccccccCcccceeEEeecccccCCCccceeccc--C------CCCEEEEEccC-ce--EEEEeccCc----c
Confidence            9988861 12334433334444444     66777776222  1      24577778763 43  467777765    6


Q ss_pred             CCcCceECcCCcEEEEEeCCCCeeeEEEE
Q 008927          302 SPTEPKWSSKGELFFVTDRKNGFWNLHKW  330 (548)
Q Consensus       302 ~~~~~~wspDG~L~~~sd~~~g~~~Ly~~  330 (548)
                      ++.-..|--+| ++|.... +..-.+|+.
T Consensus       249 ~VTCvrwGG~g-liySgS~-DrtIkvw~a  275 (480)
T KOG0271|consen  249 SVTCVRWGGEG-LIYSGSQ-DRTIKVWRA  275 (480)
T ss_pred             ceEEEEEcCCc-eEEecCC-CceEEEEEc
Confidence            78888997555 7776544 444444443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=97.00  E-value=0.072  Score=51.00  Aligned_cols=197  Identities=15%  Similarity=0.148  Sum_probs=109.6

Q ss_pred             CCeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927          146 GGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       146 gg~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      .+...++|| ..+++...|+.|..-|+.+  +++++...+.   .......++|||.+.|+--+.|         ..|-+
T Consensus        67 ~dv~~s~dg-~~alS~swD~~lrlWDl~~--g~~t~~f~GH---~~dVlsva~s~dn~qivSGSrD---------kTikl  131 (315)
T KOG0279|consen   67 SDVVLSSDG-NFALSASWDGTLRLWDLAT--GESTRRFVGH---TKDVLSVAFSTDNRQIVSGSRD---------KTIKL  131 (315)
T ss_pred             cceEEccCC-ceEEeccccceEEEEEecC--CcEEEEEEec---CCceEEEEecCCCceeecCCCc---------ceeee
Confidence            333444444 3555555566566668887  6776554431   2346677899999987654322         35777


Q ss_pred             EECCCCCccCcEEeeec--CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCC
Q 008927          226 IALNGQNIQEPKVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (548)
Q Consensus       226 idl~~g~~~~~~~L~~~--~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~  303 (548)
                      +|.-++-   .-.+.++  .+++...+|||.-.....++..     |+ ..+-+-|++. -++  .....+..    ..+
T Consensus       132 wnt~g~c---k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s-----~D-ktvKvWnl~~-~~l--~~~~~gh~----~~v  195 (315)
T KOG0279|consen  132 WNTLGVC---KYTIHEDSHREWVSCVRFSPNESNPIIVSAS-----WD-KTVKVWNLRN-CQL--RTTFIGHS----GYV  195 (315)
T ss_pred             eeecccE---EEEEecCCCcCcEEEEEEcCCCCCcEEEEcc-----CC-ceEEEEccCC-cch--hhcccccc----ccE
Confidence            7877764   3333333  5778899999986444444422     23 2355567653 221  22333433    567


Q ss_pred             cCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEE
Q 008927          304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL  383 (548)
Q Consensus       304 ~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L  383 (548)
                      .....||||.|.....+ +|  .++++|++.++-  +...++  ..     -.....|+|    .+..++.+...+   |
T Consensus       196 ~t~~vSpDGslcasGgk-dg--~~~LwdL~~~k~--lysl~a--~~-----~v~sl~fsp----nrywL~~at~~s---I  256 (315)
T KOG0279|consen  196 NTVTVSPDGSLCASGGK-DG--EAMLWDLNEGKN--LYSLEA--FD-----IVNSLCFSP----NRYWLCAATATS---I  256 (315)
T ss_pred             EEEEECCCCCEEecCCC-Cc--eEEEEEccCCce--eEeccC--CC-----eEeeEEecC----CceeEeeccCCc---e
Confidence            77899999996655444 44  566667655543  321110  00     112345653    444444443322   6


Q ss_pred             EEEECCCCc
Q 008927          384 GILDDFGHS  392 (548)
Q Consensus       384 ~~~dl~~g~  392 (548)
                      .+.|++++.
T Consensus       257 kIwdl~~~~  265 (315)
T KOG0279|consen  257 KIWDLESKA  265 (315)
T ss_pred             EEEeccchh
Confidence            677887775

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.98  E-value=0.21  Score=48.21  Aligned_cols=215  Identities=20%  Similarity=0.164  Sum_probs=110.3

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee--cCCceeeeEECCCCCEEEEEEecCCCCC
Q 008927          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMP  269 (548)
Q Consensus       192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~--~~~~~~~p~~SPDGk~La~~~~~~~~~p  269 (548)
                      |-.+..++|--.+-+++....       -..-+++|..+.+.  +..+..  +..||..-.|||||++|+-...+..  +
T Consensus        69 R~Hgi~~~p~~~ravafARrP-------Gtf~~vfD~~~~~~--pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd--~  137 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRP-------GTFAMVFDPNGAQE--PVTLVSQEGRHFYGHGVFSPDGRLLYATENDFD--P  137 (366)
T ss_pred             ccCCeecCCCCcceEEEEecC-------CceEEEECCCCCcC--cEEEecccCceeecccccCCCCcEEEeecCCCC--C
Confidence            556778888765555544332       24678889988762  444443  3447888899999997754432221  1


Q ss_pred             CCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeC------CCCe---------eeEEEEeccC
Q 008927          270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR------KNGF---------WNLHKWIESN  334 (548)
Q Consensus       270 ~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~------~~g~---------~~Ly~~d~~~  334 (548)
                       ...-|-++|... + +...-.+....    ....+..|.+||+++.+.+-      .-|+         ..|.++|..+
T Consensus       138 -~rGViGvYd~r~-~-fqrvgE~~t~G----iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~at  210 (366)
T COG3490         138 -NRGVIGVYDARE-G-FQRVGEFSTHG----IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAAT  210 (366)
T ss_pred             -CCceEEEEeccc-c-cceecccccCC----cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccc
Confidence             245677888762 2 11111122211    34578899999995555432      1122         2356666556


Q ss_pred             Cee-Eeec-ccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC----eEEEEEEECCCCceEeecCCCc-------
Q 008927          335 NEV-LAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG----RSYLGILDDFGHSLSLLDIPFT-------  401 (548)
Q Consensus       335 g~~-~~l~-~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g----~~~L~~~dl~~g~~~~l~~~~~-------  401 (548)
                      |++ ++.+ +.  +    .-.+.......-    ++++|+|...-.|    ..-|.-+-..++.++.|..+..       
T Consensus       211 G~liekh~Lp~--~----l~~lSiRHld~g----~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~an  280 (366)
T COG3490         211 GNLIEKHTLPA--S----LRQLSIRHLDIG----RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFAN  280 (366)
T ss_pred             cchhhhccCch--h----hhhcceeeeeeC----CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHh
Confidence            653 2222 11  0    111222223332    4566776654322    2334333344555666654421       


Q ss_pred             eeEeeeec-CCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          402 DIDNITLG-NDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       402 ~~~~~s~d-~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      -+.++... ...++.+. ++ .-+....+|.++|.+
T Consensus       281 YigsiA~n~~~glV~lT-SP-~GN~~vi~da~tG~v  314 (366)
T COG3490         281 YIGSIAANRRDGLVALT-SP-RGNRAVIWDAATGAV  314 (366)
T ss_pred             hhhheeecccCCeEEEe-cC-CCCeEEEEEcCCCcE
Confidence            13333322 23333333 22 235667889998874

>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated

Probab=96.95  E-value=0.0016  Score=63.95  Aligned_cols=65  Identities=12%  Similarity=0.250  Sum_probs=45.4

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccc--ccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE--ARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~--~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      |.|.+++. +|. ++++++.|.+       .++.|+||++||-....  +...|......|+.+||.|+.+||||-
T Consensus         1 ~~~~l~~~-~g~-~~~~~~~p~~-------~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~   67 (266)
T TIGR03101         1 HPFFLDAP-HGF-RFCLYHPPVA-------VGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGC   67 (266)
T ss_pred             CCEEecCC-CCc-EEEEEecCCC-------CCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            34667775 554 7899998853       23469999999954322  122334456789999999999999993

This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=96.94  E-value=0.018  Score=56.89  Aligned_cols=112  Identities=16%  Similarity=0.166  Sum_probs=69.6

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee-ecCCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (548)
Q Consensus       192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~-~~~~~~~~p~~SPDGk~La~~~~~~~~~p~  270 (548)
                      -+..+.|.+||..++-.+-+        ...|.++|+++|.   ...|. .+.+.++...|||||.+|.-..-+.     
T Consensus       197 pVtsmqwn~dgt~l~tAS~g--------sssi~iWdpdtg~---~~pL~~~glgg~slLkwSPdgd~lfaAt~da-----  260 (445)
T KOG2139|consen  197 PVTSMQWNEDGTILVTASFG--------SSSIMIWDPDTGQ---KIPLIPKGLGGFSLLKWSPDGDVLFAATCDA-----  260 (445)
T ss_pred             eeeEEEEcCCCCEEeecccC--------cceEEEEcCCCCC---cccccccCCCceeeEEEcCCCCEEEEecccc-----
Confidence            35578899999877653222        2578888999987   55555 5555677889999999885333111     


Q ss_pred             CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEec
Q 008927          271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE  332 (548)
Q Consensus       271 ~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~  332 (548)
                       ...||--.    ..++..+.+.+.     ..++...|+|+|+ |+|...   |...||.+..
T Consensus       261 -vfrlw~e~----q~wt~erw~lgs-----grvqtacWspcGsfLLf~~s---gsp~lysl~f  310 (445)
T KOG2139|consen  261 -VFRLWQEN----QSWTKERWILGS-----GRVQTACWSPCGSFLLFACS---GSPRLYSLTF  310 (445)
T ss_pred             -eeeeehhc----ccceecceeccC-----CceeeeeecCCCCEEEEEEc---CCceEEEEee
Confidence             23444111    111112333332     4678889999999 777753   3356777654

>PLN02385 hydrolase; alpha/beta fold family protein

Probab=96.89  E-value=0.0022  Score=65.88  Aligned_cols=65  Identities=15%  Similarity=0.164  Sum_probs=47.3

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +...+... ||.++++..+.|.+       ++..|+||++||...... ..|....+.|+++||.|+.+|+||-
T Consensus        62 ~~~~~~~~-~g~~l~~~~~~p~~-------~~~~~~iv~lHG~~~~~~-~~~~~~~~~l~~~g~~v~~~D~~G~  126 (349)
T PLN02385         62 EESYEVNS-RGVEIFSKSWLPEN-------SRPKAAVCFCHGYGDTCT-FFFEGIARKIASSGYGVFAMDYPGF  126 (349)
T ss_pred             eeeeEEcC-CCCEEEEEEEecCC-------CCCCeEEEEECCCCCccc-hHHHHHHHHHHhCCCEEEEecCCCC
Confidence            33445555 89999999998853       245599999999754321 1234556789999999999999984

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=96.86  E-value=0.15  Score=53.39  Aligned_cols=121  Identities=19%  Similarity=0.288  Sum_probs=69.9

Q ss_pred             CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC
Q 008927          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD  244 (548)
Q Consensus       165 ~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~  244 (548)
                      +.||.++.+|. .-..+|...     .-+.+..|+|+|+..+.+-.-..       ..+-..|+++.-   +-.+-+++.
T Consensus       251 q~Lyll~t~g~-s~~V~L~k~-----GPVhdv~W~~s~~EF~VvyGfMP-------Akvtifnlr~~~---v~df~egpR  314 (566)
T KOG2315|consen  251 QTLYLLATQGE-SVSVPLLKE-----GPVHDVTWSPSGREFAVVYGFMP-------AKVTIFNLRGKP---VFDFPEGPR  314 (566)
T ss_pred             ceEEEEEecCc-eEEEecCCC-----CCceEEEECCCCCEEEEEEeccc-------ceEEEEcCCCCE---eEeCCCCCc
Confidence            58999999852 223455432     23678899999988665533221       245556776654   333444443


Q ss_pred             ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEE
Q 008927          245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV  317 (548)
Q Consensus       245 ~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~  317 (548)
                      .  ...|||-|+.|++..  ..+.   ..++-+.|+.. -     .++.... -  ....-..|+|||+.+++
T Consensus       315 N--~~~fnp~g~ii~lAG--FGNL---~G~mEvwDv~n-~-----K~i~~~~-a--~~tt~~eW~PdGe~flT  371 (566)
T KOG2315|consen  315 N--TAFFNPHGNIILLAG--FGNL---PGDMEVWDVPN-R-----KLIAKFK-A--ANTTVFEWSPDGEYFLT  371 (566)
T ss_pred             c--ceEECCCCCEEEEee--cCCC---CCceEEEeccc-h-----hhccccc-c--CCceEEEEcCCCcEEEE
Confidence            2  346999999888654  3332   24455667763 2     2232221 0  22345789999994444

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=96.81  E-value=0.002  Score=42.90  Aligned_cols=28  Identities=29%  Similarity=0.786  Sum_probs=22.6

Q ss_pred             cCCcCceECcCCc-EEEEEeCCC--CeeeEEE
Q 008927          301 ESPTEPKWSSKGE-LFFVTDRKN--GFWNLHK  329 (548)
Q Consensus       301 ~~~~~~~wspDG~-L~~~sd~~~--g~~~Ly~  329 (548)
                      .....|.|||||+ |+|.+++ .  |..+||+
T Consensus         9 ~~~~~p~~SpDGk~i~f~s~~-~~~g~~diy~   39 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTSNR-NDRGSFDIYV   39 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEEEC-T--SSEEEEE
T ss_pred             ccccCEEEecCCCEEEEEecC-CCCCCcCEEC
Confidence            3457899999999 9999998 6  8888885

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=96.80  E-value=0.019  Score=57.11  Aligned_cols=117  Identities=14%  Similarity=0.137  Sum_probs=66.9

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCC
Q 008927          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (548)
Q Consensus       193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~  272 (548)
                      +....|||||++|+--+.|         +.+-.+|+.+...  ...+.....++....|||||++||=-+        ..
T Consensus       118 Vl~~~fsp~g~~l~tGsGD---------~TvR~WD~~TeTp--~~t~KgH~~WVlcvawsPDgk~iASG~--------~d  178 (480)
T KOG0271|consen  118 VLSVQFSPTGSRLVTGSGD---------TTVRLWDLDTETP--LFTCKGHKNWVLCVAWSPDGKKIASGS--------KD  178 (480)
T ss_pred             EEEEEecCCCceEEecCCC---------ceEEeeccCCCCc--ceeecCCccEEEEEEECCCcchhhccc--------cC
Confidence            3456799999988764322         2344556666541  233344445677789999999998322        24


Q ss_pred             ceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC-----cCCcEEEEEeCCCCeeeEEEEeccCCee
Q 008927          273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS-----SKGELFFVTDRKNGFWNLHKWIESNNEV  337 (548)
Q Consensus       273 ~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws-----pDG~L~~~sd~~~g~~~Ly~~d~~~g~~  337 (548)
                      .+|.+.|.+.++.+  -+.+.+..    -.+..+.|-     |..+++..+.. +|.-.  .+|...+..
T Consensus       179 g~I~lwdpktg~~~--g~~l~gH~----K~It~Lawep~hl~p~~r~las~sk-Dg~vr--IWd~~~~~~  239 (480)
T KOG0271|consen  179 GSIRLWDPKTGQQI--GRALRGHK----KWITALAWEPLHLVPPCRRLASSSK-DGSVR--IWDTKLGTC  239 (480)
T ss_pred             CeEEEecCCCCCcc--cccccCcc----cceeEEeecccccCCCccceecccC-CCCEE--EEEccCceE
Confidence            57888887754332  23445543    345666664     45554444444 55444  445544543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=96.78  E-value=0.18  Score=47.62  Aligned_cols=139  Identities=15%  Similarity=0.092  Sum_probs=83.0

Q ss_pred             CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~  243 (548)
                      .++|-++|+..  +.+.++...+. ....+....|--||++++--.||         ..+-++|+..-.   .+++.+..
T Consensus        60 ~qhvRlyD~~S--~np~Pv~t~e~-h~kNVtaVgF~~dgrWMyTgseD---------gt~kIWdlR~~~---~qR~~~~~  124 (311)
T KOG0315|consen   60 NQHVRLYDLNS--NNPNPVATFEG-HTKNVTAVGFQCDGRWMYTGSED---------GTVKIWDLRSLS---CQRNYQHN  124 (311)
T ss_pred             CCeeEEEEccC--CCCCceeEEec-cCCceEEEEEeecCeEEEecCCC---------ceEEEEeccCcc---cchhccCC
Confidence            45677778776  55555543321 12345666788899997654443         245555776654   45555544


Q ss_pred             CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCC
Q 008927          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN  322 (548)
Q Consensus       244 ~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~  322 (548)
                      .-+....+.|+-..|. +. +      ....|++-|+..+--  ...++...  +  .++..+.-.|||+ +....++  
T Consensus       125 spVn~vvlhpnQteLi-s~-d------qsg~irvWDl~~~~c--~~~liPe~--~--~~i~sl~v~~dgsml~a~nnk--  188 (311)
T KOG0315|consen  125 SPVNTVVLHPNQTELI-SG-D------QSGNIRVWDLGENSC--THELIPED--D--TSIQSLTVMPDGSMLAAANNK--  188 (311)
T ss_pred             CCcceEEecCCcceEE-ee-c------CCCcEEEEEccCCcc--ccccCCCC--C--cceeeEEEcCCCcEEEEecCC--
Confidence            4455567788766554 33 2      245789989864311  12233333  3  6788899999999 7666666  


Q ss_pred             CeeeEEEEeccCC
Q 008927          323 GFWNLHKWIESNN  335 (548)
Q Consensus       323 g~~~Ly~~d~~~g  335 (548)
                      |  ++|.+++-++
T Consensus       189 G--~cyvW~l~~~  199 (311)
T KOG0315|consen  189 G--NCYVWRLLNH  199 (311)
T ss_pred             c--cEEEEEccCC
Confidence            3  5666665444

>PLN00021 chlorophyllase

Probab=96.78  E-value=0.0024  Score=64.30  Aligned_cols=55  Identities=18%  Similarity=0.122  Sum_probs=43.0

Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       473 ~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      ..+.+++|.|.+       ++++|+||++||+...  ...|....+.|+++||.|+.+|++|..
T Consensus        37 ~~~p~~v~~P~~-------~g~~PvVv~lHG~~~~--~~~y~~l~~~Las~G~~VvapD~~g~~   91 (313)
T PLN00021         37 PPKPLLVATPSE-------AGTYPVLLFLHGYLLY--NSFYSQLLQHIASHGFIVVAPQLYTLA   91 (313)
T ss_pred             CCceEEEEeCCC-------CCCCCEEEEECCCCCC--cccHHHHHHHHHhCCCEEEEecCCCcC
Confidence            458999999953       4578999999998643  233555667899999999999988743

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=96.75  E-value=0.019  Score=60.47  Aligned_cols=158  Identities=14%  Similarity=0.109  Sum_probs=82.5

Q ss_pred             eeEE-ECCEEEEEeCCC-CeEEEEeCCCCCCCceecCCCCC--CCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 008927          149 AFRI-FGDTVIFSNYKD-QRLYKHSIDSKDSSPLPITPDYG--EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (548)
Q Consensus       149 ~~~~-~~~~i~F~~~~~-~~Ly~~~~~~~~~~~~~lT~~~~--~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~  224 (548)
                      .|-| |..+|+..-+.. =+||++...|  ...-..|+...  .....+..+.|.|=..-++.++.        ....|-
T Consensus       634 ~WdPFD~~rLAVa~ddg~i~lWr~~a~g--l~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as--------yd~Ti~  703 (1012)
T KOG1445|consen  634 HWDPFDDERLAVATDDGQINLWRLTANG--LPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS--------YDSTIE  703 (1012)
T ss_pred             ccCCCChHHeeecccCceEEEEEeccCC--CCcccCCcceeeecccceEEEEEecchhhhHhhhhh--------ccceee
Confidence            3444 344565543222 2789998875  32222222210  00112334445553222222211        124677


Q ss_pred             EEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCC-CCCcccCC
Q 008927          225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF-DPTIVESP  303 (548)
Q Consensus       225 ~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~-~~~~~~~~  303 (548)
                      ++|+.+++.  .-.|....+.+...+|||||++||-+..        ...|.++.... ++   ..+-.+. ..+  ..-
T Consensus       704 lWDl~~~~~--~~~l~gHtdqIf~~AWSpdGr~~AtVcK--------Dg~~rVy~Prs-~e---~pv~Eg~gpvg--tRg  767 (1012)
T KOG1445|consen  704 LWDLANAKL--YSRLVGHTDQIFGIAWSPDGRRIATVCK--------DGTLRVYEPRS-RE---QPVYEGKGPVG--TRG  767 (1012)
T ss_pred             eeehhhhhh--hheeccCcCceeEEEECCCCcceeeeec--------CceEEEeCCCC-CC---CccccCCCCcc--Ccc
Confidence            889988762  3355555667778899999999997763        34688887653 32   1111111 101  223


Q ss_pred             cCceECcCCc-EEEE-EeCCCCeeeEEEEecc
Q 008927          304 TEPKWSSKGE-LFFV-TDRKNGFWNLHKWIES  333 (548)
Q Consensus       304 ~~~~wspDG~-L~~~-sd~~~g~~~Ly~~d~~  333 (548)
                      ....|.=||+ ++++ -|. ....+|-.|+.+
T Consensus       768 ARi~wacdgr~viv~Gfdk-~SeRQv~~Y~Aq  798 (1012)
T KOG1445|consen  768 ARILWACDGRIVIVVGFDK-SSERQVQMYDAQ  798 (1012)
T ss_pred             eeEEEEecCcEEEEecccc-cchhhhhhhhhh
Confidence            4678999999 4444 243 333456566543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=96.73  E-value=0.013  Score=65.27  Aligned_cols=142  Identities=15%  Similarity=0.076  Sum_probs=80.9

Q ss_pred             eeEEECCEEEEEeCCC-CeEEEEeC------CCCCCCce---------ecCCCCCCCCceecceeeCCCCCEEEEEEecc
Q 008927          149 AFRIFGDTVIFSNYKD-QRLYKHSI------DSKDSSPL---------PITPDYGEPLVSYADGIFDPRFNRYVTVREDR  212 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~-~~Ly~~~~------~~~~~~~~---------~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~  212 (548)
                      .|++||.++++-++.. =.||....      -|..|...         .|-.    ....+.|..||||+..++-+.-+ 
T Consensus        76 R~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~----H~~DV~Dv~Wsp~~~~lvS~s~D-  150 (942)
T KOG0973|consen   76 RFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG----HDSDVLDVNWSPDDSLLVSVSLD-  150 (942)
T ss_pred             EECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEec----CCCccceeccCCCccEEEEeccc-
Confidence            5888999888876332 14577662      11001111         1111    13457789999999887776433 


Q ss_pred             CCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEE
Q 008927          213 RQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV  292 (548)
Q Consensus       213 ~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l  292 (548)
                              +.|.++|..+.+.  .+++......+-...|.|=||++|-.+ +       ...|-+.+...-|-   ...+
T Consensus       151 --------nsViiwn~~tF~~--~~vl~~H~s~VKGvs~DP~Gky~ASqs-d-------Drtikvwrt~dw~i---~k~I  209 (942)
T KOG0973|consen  151 --------NSVIIWNAKTFEL--LKVLRGHQSLVKGVSWDPIGKYFASQS-D-------DRTLKVWRTSDWGI---EKSI  209 (942)
T ss_pred             --------ceEEEEcccccee--eeeeecccccccceEECCccCeeeeec-C-------CceEEEEEccccee---eEee
Confidence                    5788889888762  344444445566779999999998444 2       12344444332221   2223


Q ss_pred             cCCCC--CcccCCcCceECcCCcEEE
Q 008927          293 AGFDP--TIVESPTEPKWSSKGELFF  316 (548)
Q Consensus       293 ~~~~~--~~~~~~~~~~wspDG~L~~  316 (548)
                      ++...  .....+..+.|||||+++.
T Consensus       210 t~pf~~~~~~T~f~RlSWSPDG~~la  235 (942)
T KOG0973|consen  210 TKPFEESPLTTFFLRLSWSPDGHHLA  235 (942)
T ss_pred             ccchhhCCCcceeeecccCCCcCeec
Confidence            22110  0002356789999999433

>PRK10985 putative hydrolase; Provisional

Probab=96.73  E-value=0.003  Score=64.23  Aligned_cols=66  Identities=21%  Similarity=0.250  Sum_probs=44.2

Q ss_pred             EeeccCCCeEEEE-EEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCC
Q 008927          465 EFPTEVPGQKAYA-YYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGL  538 (548)
Q Consensus       465 ~~~s~~dG~~i~g-~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGy  538 (548)
                      .++.. ||..+.- |...|..       ....|+||++||.+...........++.|+++||.|+.+|+||..|-
T Consensus        35 ~~~~~-dg~~~~l~w~~~~~~-------~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~  101 (324)
T PRK10985         35 RLELP-DGDFVDLAWSEDPAQ-------ARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGE  101 (324)
T ss_pred             EEECC-CCCEEEEecCCCCcc-------CCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCC
Confidence            35566 8876643 4333321       23459999999997654432233456789999999999999996543

>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=96.72  E-value=0.003  Score=49.60  Aligned_cols=53  Identities=21%  Similarity=0.355  Sum_probs=42.1

Q ss_pred             CeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCC
Q 008927          472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       472 G~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      |.+|+...+.|.+        +...+|+.+||--.-.  ..|...++.|+++||+|+..|.||
T Consensus         1 G~~L~~~~w~p~~--------~~k~~v~i~HG~~eh~--~ry~~~a~~L~~~G~~V~~~D~rG   53 (79)
T PF12146_consen    1 GTKLFYRRWKPEN--------PPKAVVVIVHGFGEHS--GRYAHLAEFLAEQGYAVFAYDHRG   53 (79)
T ss_pred             CcEEEEEEecCCC--------CCCEEEEEeCCcHHHH--HHHHHHHHHHHhCCCEEEEECCCc
Confidence            5678888898853        2459999999973222  246678899999999999999999

Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.72  E-value=0.56  Score=44.78  Aligned_cols=184  Identities=15%  Similarity=0.133  Sum_probs=89.3

Q ss_pred             eEEEEEECCCCCccCcEEeeecCC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeE-EEcCCCCC
Q 008927          221 TEIVAIALNGQNIQEPKVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV-CVAGFDPT  298 (548)
Q Consensus       221 ~~l~~idl~~g~~~~~~~L~~~~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~-~l~~~~~~  298 (548)
                      ..|+.+|..+|+   ..--....+ ....|.  .++..|++..        ....|+.+|.. +|++. .+ .....+..
T Consensus        46 ~~l~~~d~~tG~---~~W~~~~~~~~~~~~~--~~~~~v~v~~--------~~~~l~~~d~~-tG~~~-W~~~~~~~~~~  110 (238)
T PF13360_consen   46 GNLYALDAKTGK---VLWRFDLPGPISGAPV--VDGGRVYVGT--------SDGSLYALDAK-TGKVL-WSIYLTSSPPA  110 (238)
T ss_dssp             SEEEEEETTTSE---EEEEEECSSCGGSGEE--EETTEEEEEE--------TTSEEEEEETT-TSCEE-EEEEE-SSCTC
T ss_pred             CEEEEEECCCCC---EEEEeeccccccceee--eccccccccc--------ceeeeEecccC-Cccee-eeecccccccc
Confidence            589999999997   332222222 223342  2455565444        12479999977 46521 22 12221100


Q ss_pred             cccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeeccccc-ccCCCcccccCcceeeeeecCCCCEEEEEEE
Q 008927          299 IVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA-EFSRPLWVFGINSYEIIQSHGEKNLIACSYR  376 (548)
Q Consensus       299 ~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~-d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~  376 (548)
                        ..........+|+ +++....    ..|+.+|+++|+..--.+... ....+........-.+.-   .++.+++. .
T Consensus       111 --~~~~~~~~~~~~~~~~~~~~~----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~-~  180 (238)
T PF13360_consen  111 --GVRSSSSPAVDGDRLYVGTSS----GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI---SDGRVYVS-S  180 (238)
T ss_dssp             --STB--SEEEEETTEEEEEETC----SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC---CTTEEEEE-C
T ss_pred             --ccccccCceEecCEEEEEecc----CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE---ECCEEEEE-c
Confidence              1112233333466 5444432    379999999998632221100 000000000000011111   33455543 3


Q ss_pred             eCCeEEEEEEECCCCceEeecCCCceeEe-eeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          377 QNGRSYLGILDDFGHSLSLLDIPFTDIDN-ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       377 ~~g~~~L~~~dl~~g~~~~l~~~~~~~~~-~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      .++.  ++.+|+++|+..- ..+...... ...+++.+++.. .   ...|+.+|+++|+.
T Consensus       181 ~~g~--~~~~d~~tg~~~w-~~~~~~~~~~~~~~~~~l~~~~-~---~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  181 GDGR--VVAVDLATGEKLW-SKPISGIYSLPSVDGGTLYVTS-S---DGRLYALDLKTGKV  234 (238)
T ss_dssp             CTSS--EEEEETTTTEEEE-EECSS-ECECEECCCTEEEEEE-T---TTEEEEEETTTTEE
T ss_pred             CCCe--EEEEECCCCCEEE-EecCCCccCCceeeCCEEEEEe-C---CCEEEEEECCCCCE
Confidence            3343  6667999997442 222333333 356777776655 2   37999999999873

...

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=96.71  E-value=1.4  Score=48.95  Aligned_cols=192  Identities=15%  Similarity=0.092  Sum_probs=99.3

Q ss_pred             CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC
Q 008927          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD  244 (548)
Q Consensus       165 ~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~  244 (548)
                      .++|+++..+   ....+...    ...+..+.+++++..++.+.......+  .....+.....++.   ...++.+..
T Consensus       149 ~~l~~~d~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~  216 (620)
T COG1506         149 SDLYVVDIES---KLIKLGLG----NLDVVSFATDGDGRLVASIRLDDDADP--WVTNLYVLIEGNGE---LESLTPGEG  216 (620)
T ss_pred             cceEEEccCc---ccccccCC----CCceeeeeeCCCCceeEEeeeccccCC--ceEeeEEEecCCCc---eEEEcCCCc
Confidence            4677777642   22333332    345666777777777666644432111  22333333335666   677777766


Q ss_pred             ceeeeEECCCCCEEEEEEecCCCCCC-CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCC
Q 008927          245 FYAFPRMDPRGERMAWIEWHHPNMPW-DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN  322 (548)
Q Consensus       245 ~~~~p~~SPDGk~La~~~~~~~~~p~-~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~  322 (548)
                      ....+.+.+||+.+++.....+. .| ....+++.+.+ .+++..  .+...+..  .......+.-++. ++|+.....
T Consensus       217 ~~~~~~~~~~gk~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~d~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  290 (620)
T COG1506         217 SISKLAFDADGKSIALLGTESDR-GLAEGDFILLLDGE-LGEVDG--DLSSGDDT--RGAWAVEGGLDGDGLLFIATDGG  290 (620)
T ss_pred             eeeeeeeCCCCCeeEEeccCCcc-CccccceEEEEecc-ccccce--eeccCCcc--cCcHHhccccCCCcEEEEEecCC
Confidence            67888999999999988755543 23 35667777633 233211  11111000  0111122223445 777655435


Q ss_pred             CeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC-CeEEEEEEEC
Q 008927          323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN-GRSYLGILDD  388 (548)
Q Consensus       323 g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~-g~~~L~~~dl  388 (548)
                      |...++.++..++....+....      ..+     ..+..   +++.+++..... ...++|+++.
T Consensus       291 g~~~l~~~~~~~~~~~~~~~~~------~~v-----~~f~~---~~~~~~~~~s~~~~p~~i~~~~~  343 (620)
T COG1506         291 GSSPLFRVDDLGGGVEGLSGDD------GGV-----PGFDV---DGRKLALAYSSPTEPPEIYLYDR  343 (620)
T ss_pred             CceEEEEEeccCCceeeecCCC------ceE-----EEEee---CCCEEEEEecCCCCccceEEEcC
Confidence            6667777664444332222110      111     11221   567777776543 3667888875

>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []

Probab=96.68  E-value=0.0021  Score=63.52  Aligned_cols=62  Identities=19%  Similarity=0.244  Sum_probs=40.0

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccc---cc-CccC----hHHHHHHhcCcEEEEeCCCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE---AR-GILN----LSIQYWTSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~---~~-~~~~----~~~Q~~asrGyaVl~~NyRGStG  537 (548)
                      ||.+|.+-+|.| +.+    .++++|+||..|+=-...   .. ....    ...+.|+.+||+|+.+|.||..+
T Consensus         1 DGv~L~adv~~P-~~~----~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~   70 (272)
T PF02129_consen    1 DGVRLAADVYRP-GAD----GGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGG   70 (272)
T ss_dssp             TS-EEEEEEEEE---T----TSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTT
T ss_pred             CCCEEEEEEEec-CCC----CCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCccccc
Confidence            799999999999 311    267899999988633211   11 1111    22345999999999999999754

It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.67  E-value=0.075  Score=52.75  Aligned_cols=148  Identities=10%  Similarity=0.029  Sum_probs=87.9

Q ss_pred             CEEEEEeCCCCeEEEEeCCCCCCCceecCC-CCC-CCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCC
Q 008927          155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITP-DYG-EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (548)
Q Consensus       155 ~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~-~~~-~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~  232 (548)
                      ++|+-.-  ..+||++|+..    -+.|-. ... +.+.+...+..++.+..|+|-...       ...+|++.|+.+-+
T Consensus        98 ~RLvV~L--ee~IyIydI~~----MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-------t~GdV~l~d~~nl~  164 (391)
T KOG2110|consen   98 KRLVVCL--EESIYIYDIKD----MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-------TSGDVVLFDTINLQ  164 (391)
T ss_pred             ceEEEEE--cccEEEEeccc----ceeehhhhccCCCccceEeeccCCCCceEEecCCC-------CCceEEEEEcccce
Confidence            3444444  34599999964    232211 000 012334455566666788884211       13589999988754


Q ss_pred             ccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc-eeeeEEEcCCCCCcccCCcCceECcC
Q 008927          233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKWSSK  311 (548)
Q Consensus       233 ~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~-~~~~~~l~~~~~~~~~~~~~~~wspD  311 (548)
                      .  ...|.-..+..+..+|||||..||-.+ +      .++-|.|..+.. |+ +.+.|   .+-  +...+.++.|+||
T Consensus       165 ~--v~~I~aH~~~lAalafs~~G~llATAS-e------KGTVIRVf~v~~-G~kl~eFR---RG~--~~~~IySL~Fs~d  229 (391)
T KOG2110|consen  165 P--VNTINAHKGPLAALAFSPDGTLLATAS-E------KGTVIRVFSVPE-GQKLYEFR---RGT--YPVSIYSLSFSPD  229 (391)
T ss_pred             e--eeEEEecCCceeEEEECCCCCEEEEec-c------CceEEEEEEcCC-ccEeeeee---CCc--eeeEEEEEEECCC
Confidence            1  334444455577889999999999333 2      267788888874 53 32222   111  0145678999999


Q ss_pred             Cc-EEEEEeCCCCeeeEEEEec
Q 008927          312 GE-LFFVTDRKNGFWNLHKWIE  332 (548)
Q Consensus       312 G~-L~~~sd~~~g~~~Ly~~d~  332 (548)
                      ++ |...++  .+.-+||+++.
T Consensus       230 s~~L~~sS~--TeTVHiFKL~~  249 (391)
T KOG2110|consen  230 SQFLAASSN--TETVHIFKLEK  249 (391)
T ss_pred             CCeEEEecC--CCeEEEEEecc
Confidence            99 444444  57788888764

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=96.63  E-value=0.052  Score=54.70  Aligned_cols=228  Identities=9%  Similarity=0.114  Sum_probs=114.6

Q ss_pred             eeEEECCEEEEEeCCC-CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCC--CCEEEEEEeccCCCCCCceeEEEE
Q 008927          149 AFRIFGDTVIFSNYKD-QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~-~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpD--G~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      +|+.+++.|+=.+-.. -.||..+- .  .....+-..    ..+.....|.|.  +..|+--+.|.       .-.||.
T Consensus       182 ~fS~ds~~laT~swsG~~kvW~~~~-~--~~~~~l~gH----~~~v~~~~fhP~~~~~~lat~s~Dg-------tvklw~  247 (459)
T KOG0272|consen  182 SFSRDSKHLATGSWSGLVKVWSVPQ-C--NLLQTLRGH----TSRVGAAVFHPVDSDLNLATASADG-------TVKLWK  247 (459)
T ss_pred             EeecCCCeEEEeecCCceeEeecCC-c--ceeEEEecc----ccceeeEEEccCCCccceeeeccCC-------ceeeec
Confidence            4556666655544222 36665542 1  122222222    246777889997  44444433332       234555


Q ss_pred             EECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcC
Q 008927          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (548)
Q Consensus       226 idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~  305 (548)
                      ++-++-    ...|......++..+|.|+|+.|+-.+.++.   |   .||  |+.+ +.  +.....|..    ..+..
T Consensus       248 ~~~e~~----l~~l~gH~~RVs~VafHPsG~~L~TasfD~t---W---RlW--D~~t-k~--ElL~QEGHs----~~v~~  308 (459)
T KOG0272|consen  248 LSQETP----LQDLEGHLARVSRVAFHPSGKFLGTASFDST---W---RLW--DLET-KS--ELLLQEGHS----KGVFS  308 (459)
T ss_pred             cCCCcc----hhhhhcchhhheeeeecCCCceeeecccccc---h---hhc--cccc-ch--hhHhhcccc----cccce
Confidence            543321    4455544455778899999999985554332   2   344  6664 32  233344443    57899


Q ss_pred             ceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (548)
Q Consensus       306 ~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~  385 (548)
                      .+|.+||.|+...-. +....|  +|+.+|.-.-...+  . ..+.  +   ...|+|    +++.+.+...++...++-
T Consensus       309 iaf~~DGSL~~tGGl-D~~~Rv--WDlRtgr~im~L~g--H-~k~I--~---~V~fsP----NGy~lATgs~Dnt~kVWD  373 (459)
T KOG0272|consen  309 IAFQPDGSLAATGGL-DSLGRV--WDLRTGRCIMFLAG--H-IKEI--L---SVAFSP----NGYHLATGSSDNTCKVWD  373 (459)
T ss_pred             eEecCCCceeeccCc-cchhhe--eecccCcEEEEecc--c-ccce--e---eEeECC----CceEEeecCCCCcEEEee
Confidence            999999998776433 233334  35555543322211  0 1111  1   134553    455555665666666664


Q ss_pred             EECCCCc-eEeecCCCceeEee--eecCCEEEEEEecCCCCCeEE
Q 008927          386 LDDFGHS-LSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVA  427 (548)
Q Consensus       386 ~dl~~g~-~~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~  427 (548)
                      +  ...+ +..+...-+.++.+  ++..+.++++++ .+..-.||
T Consensus       374 L--R~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas-yD~t~kiW  415 (459)
T KOG0272|consen  374 L--RMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS-YDNTVKIW  415 (459)
T ss_pred             e--cccccceecccccchhhheEecccCCeEEEEcc-cCcceeee
Confidence            4  3222 22222222234444  555666655553 34344444

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.62  E-value=0.53  Score=48.84  Aligned_cols=235  Identities=14%  Similarity=0.106  Sum_probs=117.2

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCC--CEEEEEEeccCCCCCCceeEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRF--NRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG--~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      .|+.++..++...  ...|+++.+.++ -+.-+....   ....+.++.|||.|  ..|+|..-...+.  .....|+.|
T Consensus       138 k~s~~D~y~ARvv--~~sl~i~e~t~n-~~~~p~~~l---r~~gi~dFsisP~~n~~~la~~tPEk~~k--pa~~~i~sI  209 (561)
T COG5354         138 KFSIDDKYVARVV--GSSLYIHEITDN-IEEHPFKNL---RPVGILDFSISPEGNHDELAYWTPEKLNK--PAMVRILSI  209 (561)
T ss_pred             eeeecchhhhhhc--cCeEEEEecCCc-cccCchhhc---cccceeeEEecCCCCCceEEEEccccCCC--CcEEEEEEc
Confidence            4666666555553  445777776321 111111111   01357789999964  4455542221111  134567777


Q ss_pred             ECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCC--C-CCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCC
Q 008927          227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHP--N-MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (548)
Q Consensus       227 dl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~--~-~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~  303 (548)
                      ...+-..  .+.|.+-.+  ....|.+.|++|++....+-  + .-+..++||++++.. ..   .+...+..    ..+
T Consensus       210 p~~s~l~--tk~lfk~~~--~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~---i~V~~~~~----~pV  277 (561)
T COG5354         210 PKNSVLV--TKNLFKVSG--VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RS---IPVEKDLK----DPV  277 (561)
T ss_pred             cCCCeee--eeeeEeecc--cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-cc---cceecccc----ccc
Confidence            7332210  122333333  25679999999988764443  1 113468999999873 22   22211222    568


Q ss_pred             cCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEE
Q 008927          304 TEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY  382 (548)
Q Consensus       304 ~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~  382 (548)
                      .++.|.|+++ +..++-...  ..+-.+++.++ ++-..++...          ++..|+|   .+++|++..-.+-...
T Consensus       278 hdf~W~p~S~~F~vi~g~~p--a~~s~~~lr~N-l~~~~Pe~~r----------NT~~fsp---~~r~il~agF~nl~gn  341 (561)
T COG5354         278 HDFTWEPLSSRFAVISGYMP--ASVSVFDLRGN-LRFYFPEQKR----------NTIFFSP---HERYILFAGFDNLQGN  341 (561)
T ss_pred             eeeeecccCCceeEEecccc--cceeecccccc-eEEecCCccc----------ccccccC---cccEEEEecCCccccc
Confidence            9999999998 777763211  22344455333 4433332211          1122333   4566665444444455


Q ss_pred             EEEEECCCCceE--eecCCCceeEeeeecCCEEEEEEec
Q 008927          383 LGILDDFGHSLS--LLDIPFTDIDNITLGNDCLFVEGAS  419 (548)
Q Consensus       383 L~~~dl~~g~~~--~l~~~~~~~~~~s~d~~~l~~~~ss  419 (548)
                      +-.+|..+....  .+......+..+++|+..+.....+
T Consensus       342 i~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts  380 (561)
T COG5354         342 IEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTS  380 (561)
T ss_pred             eEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCC
Confidence            666666543221  1222222344446666655444433

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.58  E-value=0.42  Score=47.92  Aligned_cols=206  Identities=11%  Similarity=0.148  Sum_probs=102.0

Q ss_pred             eeEEECCEEEEEeCC-CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYK-DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~-~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      .++.||+.+++.+.. ...+-++|++.  ++...-.+.   +++-..-| +.++  ....+|.+.         .+..+.
T Consensus       101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~--~kvv~ei~~---PGC~~iyP-~~~~--~F~~lC~DG---------sl~~v~  163 (342)
T PF06433_consen  101 ALSADGKFLYVQNFTPATSVTVVDLAA--KKVVGEIDT---PGCWLIYP-SGNR--GFSMLCGDG---------SLLTVT  163 (342)
T ss_dssp             EE-TTSSEEEEEEESSSEEEEEEETTT--TEEEEEEEG---TSEEEEEE-EETT--EEEEEETTS---------CEEEEE
T ss_pred             EEccCCcEEEEEccCCCCeEEEEECCC--CceeeeecC---CCEEEEEe-cCCC--ceEEEecCC---------ceEEEE
Confidence            455567777666543 45799999986  333222111   12333222 2333  345556653         355555


Q ss_pred             CC-CCCccCcEEeee----cCC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc-eeeeEEEcC-C---C
Q 008927          228 LN-GQNIQEPKVLVS----GSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAG-F---D  296 (548)
Q Consensus       228 l~-~g~~~~~~~L~~----~~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~-~~~~~~l~~-~---~  296 (548)
                      |+ .|+.  .+..+.    ..+ .+..|.++.++.+++|++.        ..++|.+++.+++. +.....+.. .   .
T Consensus       164 Ld~~Gk~--~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy--------~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~  233 (342)
T PF06433_consen  164 LDADGKE--AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY--------EGNVYSADLSGDSAKFGKPWSLLTDAEKAD  233 (342)
T ss_dssp             ETSTSSE--EEEEEEESSTTTS-B-S--EEETTTTEEEEEBT--------TSEEEEEEETTSSEEEEEEEESS-HHHHHT
T ss_pred             ECCCCCE--eEeeccccCCCCcccccccceECCCCeEEEEec--------CCEEEEEeccCCcccccCcccccCcccccc
Confidence            54 3331  222211    112 2457778888888989873        46899999985432 111111111 0   0


Q ss_pred             CCcccCCcCceECcCCc-EEEEEeCC------CCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCC
Q 008927          297 PTIVESPTEPKWSSKGE-LFFVTDRK------NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKN  369 (548)
Q Consensus       297 ~~~~~~~~~~~wspDG~-L~~~sd~~------~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~  369 (548)
                      ..+....+..++.+... ||++.+.+      .+..+||.+|+++++...-.+.+    .+.++     ...+.   +++
T Consensus       234 ~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----~~~~S-----i~Vsq---d~~  301 (342)
T PF06433_consen  234 GWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----HPIDS-----IAVSQ---DDK  301 (342)
T ss_dssp             TEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----EEESE-----EEEES---SSS
T ss_pred             CcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----Cccce-----EEEcc---CCC
Confidence            01113345566766544 77765431      34568999999998753222211    12221     23332   555


Q ss_pred             EEEEEEEeCCeEEEEEEECCCCceE
Q 008927          370 LIACSYRQNGRSYLGILDDFGHSLS  394 (548)
Q Consensus       370 ~l~~~~~~~g~~~L~~~dl~~g~~~  394 (548)
                      -+++... .+...|+++|..+|+..
T Consensus       302 P~L~~~~-~~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  302 PLLYALS-AGDGTLDVYDAATGKLV  325 (342)
T ss_dssp             -EEEEEE-TTTTEEEEEETTT--EE
T ss_pred             cEEEEEc-CCCCeEEEEeCcCCcEE
Confidence            5655544 34457899999998754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=96.57  E-value=0.65  Score=45.01  Aligned_cols=237  Identities=10%  Similarity=0.053  Sum_probs=118.8

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      .|++|.++|+=. ..++.|-+-|.-+. .+...|+-.    ..-+...++||.|+.|++---+       ....||.+..
T Consensus        62 ~ws~Dsr~ivSa-SqDGklIvWDs~Tt-nK~haipl~----s~WVMtCA~sPSg~~VAcGGLd-------N~Csiy~ls~  128 (343)
T KOG0286|consen   62 DWSTDSRRIVSA-SQDGKLIVWDSFTT-NKVHAIPLP----SSWVMTCAYSPSGNFVACGGLD-------NKCSIYPLST  128 (343)
T ss_pred             EecCCcCeEEee-ccCCeEEEEEcccc-cceeEEecC----ceeEEEEEECCCCCeEEecCcC-------ceeEEEeccc
Confidence            455666555443 34566655555431 222233221    2345567899999998884222       2356666553


Q ss_pred             C--CCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCc
Q 008927          229 N--GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (548)
Q Consensus       229 ~--~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~  306 (548)
                      +  .+.....+.|.....+.+--+|-+|+.-|  .+  .     ..+...+-|++. |.  ....+.+..    ..+..+
T Consensus       129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~~il--T~--S-----GD~TCalWDie~-g~--~~~~f~GH~----gDV~sl  192 (343)
T KOG0286|consen  129 RDAEGNVRVSRELAGHTGYLSCCRFLDDNHIL--TG--S-----GDMTCALWDIET-GQ--QTQVFHGHT----GDVMSL  192 (343)
T ss_pred             ccccccceeeeeecCccceeEEEEEcCCCceE--ec--C-----CCceEEEEEccc-ce--EEEEecCCc----ccEEEE
Confidence            3  22211134455556677777888887633  22  1     134566678884 54  234455544    457778


Q ss_pred             eECc-CCcEEEEEeCCCCeeeEEEEeccCCeeEeec-ccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEE
Q 008927          307 KWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (548)
Q Consensus       307 ~wsp-DG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~-~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~  384 (548)
                      ..+| |++.++...- +...  +++|...+..++-. -.+.|+..         ..|.|   +|..+. +-.+++..+||
T Consensus       193 sl~p~~~ntFvSg~c-D~~a--klWD~R~~~c~qtF~ghesDINs---------v~ffP---~G~afa-tGSDD~tcRly  256 (343)
T KOG0286|consen  193 SLSPSDGNTFVSGGC-DKSA--KLWDVRSGQCVQTFEGHESDINS---------VRFFP---SGDAFA-TGSDDATCRLY  256 (343)
T ss_pred             ecCCCCCCeEEeccc-ccce--eeeeccCcceeEeecccccccce---------EEEcc---CCCeee-ecCCCceeEEE
Confidence            8889 7775554222 2223  34455455544433 23344433         33443   555443 44466777665


Q ss_pred             EEECCCCceEeecCCCce---eEee-eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          385 ILDDFGHSLSLLDIPFTD---IDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       385 ~~dl~~g~~~~l~~~~~~---~~~~-s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                        |+.....-.+-.....   +.++ -...++|+|.+...   ....+.|.-.++
T Consensus       257 --DlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d---~~c~vWDtlk~e  306 (343)
T KOG0286|consen  257 --DLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD---FTCNVWDTLKGE  306 (343)
T ss_pred             --eecCCcEEeeeccCcccCCceeEEEcccccEEEeeecC---CceeEeeccccc
Confidence              5444322222222222   3333 12345566665432   345566644443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=96.56  E-value=0.087  Score=58.02  Aligned_cols=153  Identities=12%  Similarity=0.105  Sum_probs=85.7

Q ss_pred             eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (548)
Q Consensus       150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~  229 (548)
                      +.-+|..|++-+ .|..|-+++.+.. +..+.+-..    ...+..+.++|.|+.|+.+.-+         ..|..+|+.
T Consensus       104 v~g~g~~iaags-dD~~vK~~~~~D~-s~~~~lrgh----~apVl~l~~~p~~~fLAvss~d---------G~v~iw~~~  168 (933)
T KOG1274|consen  104 VSGSGKMIAAGS-DDTAVKLLNLDDS-SQEKVLRGH----DAPVLQLSYDPKGNFLAVSSCD---------GKVQIWDLQ  168 (933)
T ss_pred             EecCCcEEEeec-CceeEEEEecccc-chheeeccc----CCceeeeeEcCCCCEEEEEecC---------ceEEEEEcc
Confidence            333455777765 2446777777641 333333332    2335667899999987776433         368888998


Q ss_pred             CCCcc-CcEEeeecCC-----ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCC
Q 008927          230 GQNIQ-EPKVLVSGSD-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (548)
Q Consensus       230 ~g~~~-~~~~L~~~~~-----~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~  303 (548)
                      .+... ...-+....+     .+..++|+|||..+++...        ...+-+++.++ .+  ....+.+..-.  ..+
T Consensus       169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~--------d~~Vkvy~r~~-we--~~f~Lr~~~~s--s~~  235 (933)
T KOG1274|consen  169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV--------DNTVKVYSRKG-WE--LQFKLRDKLSS--SKF  235 (933)
T ss_pred             cchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc--------CCeEEEEccCC-ce--eheeecccccc--cce
Confidence            87520 0111222222     3467899999888886652        23577777663 33  12222222101  125


Q ss_pred             cCceECcCCcEEEEEeCCCCeeeEEEEecc
Q 008927          304 TEPKWSSKGELFFVTDRKNGFWNLHKWIES  333 (548)
Q Consensus       304 ~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~  333 (548)
                      ....|||+|+.+..++. .|  +|.++|.+
T Consensus       236 ~~~~wsPnG~YiAAs~~-~g--~I~vWnv~  262 (933)
T KOG1274|consen  236 SDLQWSPNGKYIAASTL-DG--QILVWNVD  262 (933)
T ss_pred             EEEEEcCCCcEEeeecc-CC--cEEEEecc
Confidence            67899999994444444 33  34444443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=96.55  E-value=0.61  Score=51.69  Aligned_cols=97  Identities=11%  Similarity=0.171  Sum_probs=63.6

Q ss_pred             eEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (548)
Q Consensus       221 ~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~  300 (548)
                      +.+.++....++.  -.+|+...-.....+++-+|+++|.-+        +...|-++++...+   ..+.+-+.+    
T Consensus        76 ~tv~~y~fps~~~--~~iL~Rftlp~r~~~v~g~g~~iaags--------dD~~vK~~~~~D~s---~~~~lrgh~----  138 (933)
T KOG1274|consen   76 NTVLRYKFPSGEE--DTILARFTLPIRDLAVSGSGKMIAAGS--------DDTAVKLLNLDDSS---QEKVLRGHD----  138 (933)
T ss_pred             ceEEEeeCCCCCc--cceeeeeeccceEEEEecCCcEEEeec--------CceeEEEEeccccc---hheeecccC----
Confidence            4667777777761  225554433345668999999999655        24568888877433   234455544    


Q ss_pred             cCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCee
Q 008927          301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV  337 (548)
Q Consensus       301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~  337 (548)
                      ..+..+.+.|+|+++.++.- +|  .|+.++++++..
T Consensus       139 apVl~l~~~p~~~fLAvss~-dG--~v~iw~~~~~~~  172 (933)
T KOG1274|consen  139 APVLQLSYDPKGNFLAVSSC-DG--KVQIWDLQDGIL  172 (933)
T ss_pred             CceeeeeEcCCCCEEEEEec-Cc--eEEEEEcccchh
Confidence            67889999999997777665 55  466667767654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=96.49  E-value=0.043  Score=55.08  Aligned_cols=133  Identities=14%  Similarity=0.159  Sum_probs=82.1

Q ss_pred             CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~  243 (548)
                      ++.|-..|..+  +..++-.+.    ..++..+..++||..|+....+         +.|=++|+.+.+   .+......
T Consensus       321 DkkvRfwD~Rs--~~~~~sv~~----gg~vtSl~ls~~g~~lLsssRD---------dtl~viDlRt~e---I~~~~sA~  382 (459)
T KOG0288|consen  321 DKKVRFWDIRS--ADKTRSVPL----GGRVTSLDLSMDGLELLSSSRD---------DTLKVIDLRTKE---IRQTFSAE  382 (459)
T ss_pred             ccceEEEeccC--CceeeEeec----CcceeeEeeccCCeEEeeecCC---------Cceeeeeccccc---EEEEeecc
Confidence            34455555544  344433333    2478888899999887654222         357789999988   66665443


Q ss_pred             Cc-----eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEE
Q 008927          244 DF-----YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT  318 (548)
Q Consensus       244 ~~-----~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~s  318 (548)
                      ++     ..-..|||||+++|--+        ....||+.++. +|++.......+.+    ..+....|.|-|+-++..
T Consensus       383 g~k~asDwtrvvfSpd~~YvaAGS--------~dgsv~iW~v~-tgKlE~~l~~s~s~----~aI~s~~W~~sG~~Llsa  449 (459)
T KOG0288|consen  383 GFKCASDWTRVVFSPDGSYVAAGS--------ADGSVYIWSVF-TGKLEKVLSLSTSN----AAITSLSWNPSGSGLLSA  449 (459)
T ss_pred             ccccccccceeEECCCCceeeecc--------CCCcEEEEEcc-CceEEEEeccCCCC----cceEEEEEcCCCchhhcc
Confidence            33     34568999999887322        24579999998 46654333333332    357888999999833445


Q ss_pred             eCCCCeeeEE
Q 008927          319 DRKNGFWNLH  328 (548)
Q Consensus       319 d~~~g~~~Ly  328 (548)
                      |+ +....||
T Consensus       450 dk-~~~v~lW  458 (459)
T KOG0288|consen  450 DK-QKAVTLW  458 (459)
T ss_pred             cC-CcceEec
Confidence            55 4443343

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.97  Score=44.17  Aligned_cols=271  Identities=10%  Similarity=0.082  Sum_probs=135.7

Q ss_pred             ceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927          191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (548)
Q Consensus       191 ~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~  270 (548)
                      .+..++.++++|..++..+++         ..|.++|..+|..  .+.|........-.+|-.....+.+.+. .    +
T Consensus        15 ~~i~sl~fs~~G~~litss~d---------Dsl~LYd~~~g~~--~~ti~skkyG~~~~~Fth~~~~~i~sSt-k----~   78 (311)
T KOG1446|consen   15 GKINSLDFSDDGLLLITSSED---------DSLRLYDSLSGKQ--VKTINSKKYGVDLACFTHHSNTVIHSST-K----E   78 (311)
T ss_pred             CceeEEEecCCCCEEEEecCC---------CeEEEEEcCCCce--eeEeecccccccEEEEecCCceEEEccC-C----C
Confidence            356778899999988774333         2577778888761  3444432111222234444455554442 1    1


Q ss_pred             CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCC
Q 008927          271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP  350 (548)
Q Consensus       271 ~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p  350 (548)
                       ...|..+++.. .+  -.|...|..    ..+..+.-+|-++.++.+.. +.  .|.++|+...+-+-+....   +.|
T Consensus        79 -d~tIryLsl~d-Nk--ylRYF~GH~----~~V~sL~~sP~~d~FlS~S~-D~--tvrLWDlR~~~cqg~l~~~---~~p  144 (311)
T KOG1446|consen   79 -DDTIRYLSLHD-NK--YLRYFPGHK----KRVNSLSVSPKDDTFLSSSL-DK--TVRLWDLRVKKCQGLLNLS---GRP  144 (311)
T ss_pred             -CCceEEEEeec-Cc--eEEEcCCCC----ceEEEEEecCCCCeEEeccc-CC--eEEeeEecCCCCceEEecC---CCc
Confidence             35688888874 33  245566654    45777888887765544433 32  4555665444433222110   011


Q ss_pred             cccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECC---CCceEee--cC-CCceeEee--eecCCEEEEEEecCCC
Q 008927          351 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF---GHSLSLL--DI-PFTDIDNI--TLGNDCLFVEGASGVE  422 (548)
Q Consensus       351 ~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~---~g~~~~l--~~-~~~~~~~~--s~d~~~l~~~~ss~~~  422 (548)
                      .       -++.     ..-|+|....++. .|.++|+.   .|--+..  +. ....+..+  ++||+.|++...    
T Consensus       145 i-------~AfD-----p~GLifA~~~~~~-~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----  207 (311)
T KOG1446|consen  145 I-------AAFD-----PEGLIFALANGSE-LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----  207 (311)
T ss_pred             c-------eeEC-----CCCcEEEEecCCC-eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----
Confidence            1       1232     2234444333332 56666753   2322222  21 12334444  889998876543    


Q ss_pred             CCeEEEEEcCCCceeeeeeEEEecCCCCCCccCCCc-cCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEE
Q 008927          423 PSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYF-SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKS  501 (548)
Q Consensus       423 p~~l~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~~~-~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~i  501 (548)
                      ...++++|.=+|.+.. + ........+..++ +.+ +.-+.| +.+. +..+||.|=..-         +++.-...-.
T Consensus       208 ~s~~~~lDAf~G~~~~-t-fs~~~~~~~~~~~-a~ftPds~Fv-l~gs-~dg~i~vw~~~t---------g~~v~~~~~~  273 (311)
T KOG1446|consen  208 ASFIYLLDAFDGTVKS-T-FSGYPNAGNLPLS-ATFTPDSKFV-LSGS-DDGTIHVWNLET---------GKKVAVLRGP  273 (311)
T ss_pred             CCcEEEEEccCCcEee-e-EeeccCCCCccee-EEECCCCcEE-EEec-CCCcEEEEEcCC---------CcEeeEecCC
Confidence            3578899876776321 0 0111111111122 223 223333 4444 545688887621         2221111112


Q ss_pred             ccCccccccCccChHHHHHHhcC
Q 008927          502 HGGPTSEARGILNLSIQYWTSRG  524 (548)
Q Consensus       502 HGGP~~~~~~~~~~~~Q~~asrG  524 (548)
                      |+||.....  |+|....|++.+
T Consensus       274 ~~~~~~~~~--fnP~~~mf~sa~  294 (311)
T KOG1446|consen  274 NGGPVSCVR--FNPRYAMFVSAS  294 (311)
T ss_pred             CCCCccccc--cCCceeeeeecC
Confidence            889887765  777665565543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.45  E-value=1.4  Score=45.89  Aligned_cols=228  Identities=12%  Similarity=0.082  Sum_probs=109.7

Q ss_pred             EEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCC
Q 008927          151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG  230 (548)
Q Consensus       151 ~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~  230 (548)
                      ..++++|++.. .++.||.+|.++  |+..=-....   ......|... + ..|++ ...        ...|+.+|+++
T Consensus       117 ~v~~~~v~v~~-~~g~l~ald~~t--G~~~W~~~~~---~~~~ssP~v~-~-~~v~v-~~~--------~g~l~ald~~t  179 (394)
T PRK11138        117 TVAGGKVYIGS-EKGQVYALNAED--GEVAWQTKVA---GEALSRPVVS-D-GLVLV-HTS--------NGMLQALNESD  179 (394)
T ss_pred             EEECCEEEEEc-CCCEEEEEECCC--CCCcccccCC---CceecCCEEE-C-CEEEE-ECC--------CCEEEEEEccC
Confidence            34677777754 567899999876  5442111110   1123344443 3 34443 222        24799999999


Q ss_pred             CCccCcEEeeec--CC----ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCC----cc
Q 008927          231 QNIQEPKVLVSG--SD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT----IV  300 (548)
Q Consensus       231 g~~~~~~~L~~~--~~----~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~----~~  300 (548)
                      |+   ..--.+.  +.    ....|... +| .++ +..       ....++.++.+ +|+..=...+......    ..
T Consensus       180 G~---~~W~~~~~~~~~~~~~~~sP~v~-~~-~v~-~~~-------~~g~v~a~d~~-~G~~~W~~~~~~~~~~~~~~~~  245 (394)
T PRK11138        180 GA---VKWTVNLDVPSLTLRGESAPATA-FG-GAI-VGG-------DNGRVSAVLME-QGQLIWQQRISQPTGATEIDRL  245 (394)
T ss_pred             CC---EeeeecCCCCcccccCCCCCEEE-CC-EEE-EEc-------CCCEEEEEEcc-CChhhheeccccCCCccchhcc
Confidence            97   3211111  11    12345543 22 343 331       13468888877 3541000111110000    00


Q ss_pred             -cCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC
Q 008927          301 -ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (548)
Q Consensus       301 -~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g  379 (548)
                       .....|.. .||.+|+.+.  .|  .|+.+|+++|+..--.+    +..+      .....     .++.||+...   
T Consensus       246 ~~~~~sP~v-~~~~vy~~~~--~g--~l~ald~~tG~~~W~~~----~~~~------~~~~~-----~~~~vy~~~~---  302 (394)
T PRK11138        246 VDVDTTPVV-VGGVVYALAY--NG--NLVALDLRSGQIVWKRE----YGSV------NDFAV-----DGGRIYLVDQ---  302 (394)
T ss_pred             cccCCCcEE-ECCEEEEEEc--CC--eEEEEECCCCCEEEeec----CCCc------cCcEE-----ECCEEEEEcC---
Confidence             00123333 2454665543  23  68999998887532111    1110      00112     4677776542   


Q ss_pred             eEEEEEEECCCCceEe-ecC-CCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          380 RSYLGILDDFGHSLSL-LDI-PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       380 ~~~L~~~dl~~g~~~~-l~~-~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      ..+|+.+|.++|+..- ... ...........++.+++...    ...|+.+|.++|+.
T Consensus       303 ~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~----~G~l~~ld~~tG~~  357 (394)
T PRK11138        303 NDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDS----EGYLHWINREDGRF  357 (394)
T ss_pred             CCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeC----CCEEEEEECCCCCE
Confidence            3469999999986531 111 11112222234666665432    35799999988874

>PHA02857 monoglyceride lipase; Provisional

Probab=96.45  E-value=0.0059  Score=60.25  Aligned_cols=55  Identities=20%  Similarity=0.235  Sum_probs=45.0

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ||..+++.+|.|.+        .+.|+|+++||....  ...|....++|+.+||.|+.+|+||.
T Consensus         9 ~g~~l~~~~~~~~~--------~~~~~v~llHG~~~~--~~~~~~~~~~l~~~g~~via~D~~G~   63 (276)
T PHA02857          9 DNDYIYCKYWKPIT--------YPKALVFISHGAGEH--SGRYEELAENISSLGILVFSHDHIGH   63 (276)
T ss_pred             CCCEEEEEeccCCC--------CCCEEEEEeCCCccc--cchHHHHHHHHHhCCCEEEEccCCCC
Confidence            89999999999831        245899999998643  33566778899999999999999996

>COG2936 Predicted acyl esterases [General function prediction only]

Probab=96.44  E-value=0.0049  Score=65.59  Aligned_cols=67  Identities=21%  Similarity=0.394  Sum_probs=52.0

Q ss_pred             EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccC------hHHHHHHhcCcEEEEeCCCCCC
Q 008927          463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN------LSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       463 ~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~------~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      .+.++-+ ||.+++.-||.|++       .++.|+|+..+=.|...-...+.      +..++||.+||+|+.+|-||+.
T Consensus        21 ~v~V~MR-DGvrL~~dIy~Pa~-------~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~   92 (563)
T COG2936          21 DVMVPMR-DGVRLAADIYRPAG-------AGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRG   92 (563)
T ss_pred             eeeEEec-CCeEEEEEEEccCC-------CCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccc
Confidence            4667777 99999999999975       46889999999777655422221      2225899999999999999976


Q ss_pred             C
Q 008927          537 G  537 (548)
Q Consensus       537 G  537 (548)
                      +
T Consensus        93 ~   93 (563)
T COG2936          93 G   93 (563)
T ss_pred             c
Confidence            5

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=96.43  E-value=1.5  Score=45.81  Aligned_cols=202  Identities=13%  Similarity=0.111  Sum_probs=103.5

Q ss_pred             HHHhcCCCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEE
Q 008927           82 DVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFS  160 (548)
Q Consensus        82 ~~l~~~~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~  160 (548)
                      ..+...++.+..+.++| |+.| |....   +|+-+-|....   |.--+|.+..-+  +.+     ..+...+..=+|+
T Consensus       314 ~~i~GHnK~ITaLtv~~d~~~i-~Sgsy---DG~I~~W~~~~---g~~~~~~g~~h~--nqI-----~~~~~~~~~~~~t  379 (603)
T KOG0318|consen  314 KVISGHNKSITALTVSPDGKTI-YSGSY---DGHINSWDSGS---GTSDRLAGKGHT--NQI-----KGMAASESGELFT  379 (603)
T ss_pred             heecccccceeEEEEcCCCCEE-Eeecc---CceEEEEecCC---cccccccccccc--ceE-----EEEeecCCCcEEE
Confidence            33455567777788887 4333 32222   46655554422   233333322100  000     1222222122444


Q ss_pred             eCCCCeEEEEeCCCCC---CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcE
Q 008927          161 NYKDQRLYKHSIDSKD---SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK  237 (548)
Q Consensus       161 ~~~~~~Ly~~~~~~~~---~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~  237 (548)
                      ..-|..|+++++.+++   .+...|-..       --.++.++||..++.++..          +|.++.-.++-    .
T Consensus       380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q-------P~~lav~~d~~~avv~~~~----------~iv~l~~~~~~----~  438 (603)
T KOG0318|consen  380 IGWDDTLRVISLKDNGYTKSEVVKLGSQ-------PKGLAVLSDGGTAVVACIS----------DIVLLQDQTKV----S  438 (603)
T ss_pred             EecCCeEEEEecccCcccccceeecCCC-------ceeEEEcCCCCEEEEEecC----------cEEEEecCCcc----e
Confidence            4445678888876420   111122221       1134566777665555433          45655432321    1


Q ss_pred             EeeecCCc-eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceee-eEEEcCCCCCcccCCcCceECcCCcEE
Q 008927          238 VLVSGSDF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCVAGFDPTIVESPTEPKWSSKGELF  315 (548)
Q Consensus       238 ~L~~~~~~-~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~-~~~l~~~~~~~~~~~~~~~wspDG~L~  315 (548)
                      .+.  ..+ ....+++||++.+| +.-       +...|+++.+.+ +++.+ ..++.. .    ..+...++||||+.+
T Consensus       439 ~~~--~~y~~s~vAv~~~~~~va-VGG-------~Dgkvhvysl~g-~~l~ee~~~~~h-~----a~iT~vaySpd~~yl  502 (603)
T KOG0318|consen  439 SIP--IGYESSAVAVSPDGSEVA-VGG-------QDGKVHVYSLSG-DELKEEAKLLEH-R----AAITDVAYSPDGAYL  502 (603)
T ss_pred             eec--cccccceEEEcCCCCEEE-Eec-------ccceEEEEEecC-Ccccceeeeecc-c----CCceEEEECCCCcEE
Confidence            111  122 24557999999887 431       235699999984 44323 233332 2    467889999999966


Q ss_pred             EEEeCCCCeeeEEEEeccCCee
Q 008927          316 FVTDRKNGFWNLHKWIESNNEV  337 (548)
Q Consensus       316 ~~sd~~~g~~~Ly~~d~~~g~~  337 (548)
                      ...|. .+  .+..+|+++.+.
T Consensus       503 a~~Da-~r--kvv~yd~~s~~~  521 (603)
T KOG0318|consen  503 AAGDA-SR--KVVLYDVASREV  521 (603)
T ss_pred             EEecc-CC--cEEEEEcccCce
Confidence            67776 43  466677777665

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=96.42  E-value=0.59  Score=49.05  Aligned_cols=232  Identities=12%  Similarity=0.076  Sum_probs=116.0

Q ss_pred             CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~  243 (548)
                      .++|.+-|+.+  |..++-.+...+......-+.||.|++.++.+..+          .|-+.+..+-..-+.+.|.  .
T Consensus       281 ~~~l~IWDI~t--G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~----------sisIyEtpsf~lld~Kslk--i  346 (698)
T KOG2314|consen  281 GQQLIIWDIAT--GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN----------SISIYETPSFMLLDKKSLK--I  346 (698)
T ss_pred             CceEEEEEccc--cchhcceeccCCCccccceEEeccCCceeEEeccc----------eEEEEecCceeeecccccC--C
Confidence            35777778877  54433222111122345567899999998887432          2333222111000001111  1


Q ss_pred             CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCC-
Q 008927          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK-  321 (548)
Q Consensus       244 ~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~-  321 (548)
                      ..+..+.|||-+.-|||-.-...+.|   .++-++.+....++..+. +..      .+...+.|-.+|+ |.+-.||. 
T Consensus       347 ~gIr~FswsP~~~llAYwtpe~~~~p---arvtL~evPs~~~iRt~n-lfn------VsDckLhWQk~gdyLcvkvdR~t  416 (698)
T KOG2314|consen  347 SGIRDFSWSPTSNLLAYWTPETNNIP---ARVTLMEVPSKREIRTKN-LFN------VSDCKLHWQKSGDYLCVKVDRHT  416 (698)
T ss_pred             ccccCcccCCCcceEEEEcccccCCc---ceEEEEecCccceeeecc-cee------eeccEEEeccCCcEEEEEEEeec
Confidence            12345689999999998653222322   456677776422222111 111      4456789999999 77777763 


Q ss_pred             -CC------eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC--CeEEEEEEECCCCc
Q 008927          322 -NG------FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN--GRSYLGILDDFGHS  392 (548)
Q Consensus       322 -~g------~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~--g~~~L~~~dl~~g~  392 (548)
                       .+      +.+|++++-..=-+..+     +...+.     -.|+|-|   .|+++.......  ..-+.|.+....++
T Consensus       417 K~~~~g~f~n~eIfrireKdIpve~v-----elke~v-----i~FaWEP---~gdkF~vi~g~~~k~tvsfY~~e~~~~~  483 (698)
T KOG2314|consen  417 KSKVKGQFSNLEIFRIREKDIPVEVV-----ELKESV-----IAFAWEP---HGDKFAVISGNTVKNTVSFYAVETNIKK  483 (698)
T ss_pred             cccccceEeeEEEEEeeccCCCceee-----ecchhe-----eeeeecc---CCCeEEEEEccccccceeEEEeecCCCc
Confidence             11      23466665321111111     111111     1245655   666665544333  33455555543444


Q ss_pred             eEeec-CCCcee--EeeeecCCEEEEEEecCCCCCeEEEEEcCC
Q 008927          393 LSLLD-IPFTDI--DNITLGNDCLFVEGASGVEPSSVAKVTLDD  433 (548)
Q Consensus       393 ~~~l~-~~~~~~--~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~  433 (548)
                      .+.+. .+-...  -.+++.|+.+++.+-.. ..++++.+|.+-
T Consensus       484 ~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s-~~g~l~F~D~~~  526 (698)
T KOG2314|consen  484 PSLVKELDKKFANTVFWSPKGRFVVVAALVS-RRGDLEFYDTDY  526 (698)
T ss_pred             hhhhhhhcccccceEEEcCCCcEEEEEEecc-cccceEEEecch
Confidence            43332 121111  12378888776665433 678899998764

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=96.41  E-value=0.32  Score=50.47  Aligned_cols=230  Identities=13%  Similarity=0.096  Sum_probs=107.5

Q ss_pred             CCeEEEEeCCCCCC---CceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee
Q 008927          164 DQRLYKHSIDSKDS---SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV  240 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~---~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~  240 (548)
                      |..+...|+.|=..   .-++|.+.+   .-.+..+.||+.|..|+++...         .+.-++|.++.+   .-...
T Consensus       188 Dy~v~~wDf~gMdas~~~fr~l~P~E---~h~i~sl~ys~Tg~~iLvvsg~---------aqakl~DRdG~~---~~e~~  252 (641)
T KOG0772|consen  188 DYTVKFWDFQGMDASMRSFRQLQPCE---THQINSLQYSVTGDQILVVSGS---------AQAKLLDRDGFE---IVEFS  252 (641)
T ss_pred             cceEEEEecccccccchhhhccCccc---ccccceeeecCCCCeEEEEecC---------cceeEEccCCce---eeeee
Confidence            33455556654111   225665542   1235567899999999888533         234455555543   21122


Q ss_pred             ecCC----------c---eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEE----cCCCCCcccCC
Q 008927          241 SGSD----------F---YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV----AGFDPTIVESP  303 (548)
Q Consensus       241 ~~~~----------~---~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l----~~~~~~~~~~~  303 (548)
                      .|+.          .   ...-.|.|+.+..+.....       ...|.+.+++...+  ...++    .+.. .  ..+
T Consensus       253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~-------DgtlRiWdv~~~k~--q~qVik~k~~~g~-R--v~~  320 (641)
T KOG0772|consen  253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY-------DGTLRIWDVNNTKS--QLQVIKTKPAGGK-R--VPV  320 (641)
T ss_pred             ccchhhhhhhccCCceeeeeccccccCcccceEEecC-------CCcEEEEecCCchh--heeEEeeccCCCc-c--cCc
Confidence            2211          1   1234799999977655422       23355556653222  11111    1211 2  556


Q ss_pred             cCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecc-cccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEE
Q 008927          304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY  382 (548)
Q Consensus       304 ~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~-~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~  382 (548)
                      ....|++||+++...-. +|--++|...  +-.++.... .++....    .+.....|++   |++.|+ +...++  .
T Consensus       321 tsC~~nrdg~~iAagc~-DGSIQ~W~~~--~~~v~p~~~vk~AH~~g----~~Itsi~FS~---dg~~Ll-SRg~D~--t  387 (641)
T KOG0772|consen  321 TSCAWNRDGKLIAAGCL-DGSIQIWDKG--SRTVRPVMKVKDAHLPG----QDITSISFSY---DGNYLL-SRGFDD--T  387 (641)
T ss_pred             eeeecCCCcchhhhccc-CCceeeeecC--CcccccceEeeeccCCC----CceeEEEecc---ccchhh-hccCCC--c
Confidence            78899999995333222 4655665541  111111110 0111000    1233455664   666554 332333  4


Q ss_pred             EEEEECCCCce-----EeecCCCcee-EeeeecCCEEEEEEecC---CCCCeEEEEEcCCC
Q 008927          383 LGILDDFGHSL-----SLLDIPFTDI-DNITLGNDCLFVEGASG---VEPSSVAKVTLDDH  434 (548)
Q Consensus       383 L~~~dl~~g~~-----~~l~~~~~~~-~~~s~d~~~l~~~~ss~---~~p~~l~~~d~~~~  434 (548)
                      |.+.|+..-+.     +-|..++..- ..++++++ |++++++.   ..++.|+.+|..+-
T Consensus       388 LKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~  447 (641)
T KOG0772|consen  388 LKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTL  447 (641)
T ss_pred             eeeeeccccccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccce
Confidence            45555543211     1122222211 12366655 55666553   24567888876543

>PLN02652 hydrolase; alpha/beta fold family protein

Probab=96.39  E-value=0.0089  Score=62.38  Aligned_cols=65  Identities=15%  Similarity=0.157  Sum_probs=49.8

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      +...+... +|..++..++.|..       ++..|+||++||......  .|......|+++||.|+.+|+||..
T Consensus       111 ~~~~~~~~-~~~~l~~~~~~p~~-------~~~~~~Vl~lHG~~~~~~--~~~~~a~~L~~~Gy~V~~~D~rGhG  175 (395)
T PLN02652        111 ATSLFYGA-RRNALFCRSWAPAA-------GEMRGILIIIHGLNEHSG--RYLHFAKQLTSCGFGVYAMDWIGHG  175 (395)
T ss_pred             EEEEEECC-CCCEEEEEEecCCC-------CCCceEEEEECCchHHHH--HHHHHHHHHHHCCCEEEEeCCCCCC
Confidence            44556776 88899999999853       234589999999865432  2456678899999999999999864

>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A

Probab=96.39  E-value=0.0077  Score=60.97  Aligned_cols=68  Identities=24%  Similarity=0.369  Sum_probs=40.3

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEcc---------Cccc---cccCcc-C---hHHHHHHhc
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG---------GPTS---EARGIL-N---LSIQYWTSR  523 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHG---------GP~~---~~~~~~-~---~~~Q~~asr  523 (548)
                      ..|.+.|.+. ++..+.+||+.|++.      .++.|.||.+||         |+.+   .....+ +   ...-+||.+
T Consensus        87 ~~EKv~f~~~-p~~~vpaylLvPd~~------~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~  159 (390)
T PF12715_consen   87 TREKVEFNTT-PGSRVPAYLLVPDGA------KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKR  159 (390)
T ss_dssp             EEEEEEE--S-TTB-EEEEEEEETT--------S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTT
T ss_pred             EEEEEEEEcc-CCeeEEEEEEecCCC------CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhC
Confidence            4578888887 999999999999752      357899999998         3322   000011 1   234579999


Q ss_pred             CcEEEEeCCCC
Q 008927          524 GWAFVDVNYGG  534 (548)
Q Consensus       524 GyaVl~~NyRG  534 (548)
                      ||+|+.||..|
T Consensus       160 GYVvla~D~~g  170 (390)
T PF12715_consen  160 GYVVLAPDALG  170 (390)
T ss_dssp             TSEEEEE--TT
T ss_pred             CCEEEEEcccc
Confidence            99999999776

>PLN02872 triacylglycerol lipase

Probab=96.33  E-value=0.0086  Score=62.38  Aligned_cols=73  Identities=16%  Similarity=0.063  Sum_probs=50.7

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccCh----HHHHHHhcCcEEEEeCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL----SIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~----~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +.|...++++ ||..+.-.-+++.++. ..  ..+.|.||++||...+...+..+.    ..-.|+++||.|+.+|.||.
T Consensus        43 ~~e~h~v~T~-DGy~L~l~ri~~~~~~-~~--~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~  118 (395)
T PLN02872         43 SCTEHTIQTK-DGYLLALQRVSSRNPR-LG--SQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGT  118 (395)
T ss_pred             CceEEEEECC-CCcEEEEEEcCCCCCC-CC--CCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCccccccccc
Confidence            5678888898 9988777766543211 11  123477999999987666554332    22358899999999999997


Q ss_pred             C
Q 008927          536 T  536 (548)
Q Consensus       536 t  536 (548)
                      .
T Consensus       119 ~  119 (395)
T PLN02872        119 R  119 (395)
T ss_pred             c
Confidence            5

>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]

Probab=96.17  E-value=0.0085  Score=62.28  Aligned_cols=53  Identities=30%  Similarity=0.386  Sum_probs=37.5

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccC--hHHHHHHhcC-cEEEEeCCCC
Q 008927          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN--LSIQYWTSRG-WAFVDVNYGG  534 (548)
Q Consensus       475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~--~~~Q~~asrG-yaVl~~NyRG  534 (548)
                      ++--++.|.   +   +.++.|+||+||||=--. +.+..  ..-+.||.+| ++|+.+|||=
T Consensus        80 L~LNIwaP~---~---~a~~~PVmV~IHGG~y~~-Gs~s~~~ydgs~La~~g~vVvVSvNYRL  135 (491)
T COG2272          80 LYLNIWAPE---V---PAEKLPVMVYIHGGGYIM-GSGSEPLYDGSALAARGDVVVVSVNYRL  135 (491)
T ss_pred             eeEEeeccC---C---CCCCCcEEEEEecccccc-CCCcccccChHHHHhcCCEEEEEeCccc
Confidence            566677785   1   245689999999994321 22222  3457899999 9999999993

>PLN00181 protein SPA1-RELATED; Provisional

Probab=96.05  E-value=3.9  Score=46.99  Aligned_cols=147  Identities=5%  Similarity=0.011  Sum_probs=80.5

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~Sp-DG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      .|.+..+.++.+...++.|.+.++.+  ++. ..+...    ...+....|+| |+..|+....+         ..|.++
T Consensus       539 ~~~~~~~~~las~~~Dg~v~lWd~~~--~~~~~~~~~H----~~~V~~l~~~p~~~~~L~Sgs~D---------g~v~iW  603 (793)
T PLN00181        539 CWNSYIKSQVASSNFEGVVQVWDVAR--SQLVTEMKEH----EKRVWSIDYSSADPTLLASGSDD---------GSVKLW  603 (793)
T ss_pred             EeccCCCCEEEEEeCCCeEEEEECCC--CeEEEEecCC----CCCEEEEEEcCCCCCEEEEEcCC---------CEEEEE
Confidence            45554444555665677777778765  332 333322    22456778987 66665554322         367888


Q ss_pred             ECCCCCccCcEEeeecCCceeeeEE-CCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcC
Q 008927          227 ALNGQNIQEPKVLVSGSDFYAFPRM-DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (548)
Q Consensus       227 dl~~g~~~~~~~L~~~~~~~~~p~~-SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~  305 (548)
                      |+.++..  ...+. .........| +++|+.|+....        ...|++.|+.....  ....+.+..    ..+..
T Consensus       604 d~~~~~~--~~~~~-~~~~v~~v~~~~~~g~~latgs~--------dg~I~iwD~~~~~~--~~~~~~~h~----~~V~~  666 (793)
T PLN00181        604 SINQGVS--IGTIK-TKANICCVQFPSESGRSLAFGSA--------DHKVYYYDLRNPKL--PLCTMIGHS----KTVSY  666 (793)
T ss_pred             ECCCCcE--EEEEe-cCCCeEEEEEeCCCCCEEEEEeC--------CCeEEEEECCCCCc--cceEecCCC----CCEEE
Confidence            8887751  22232 2223344456 567888875442        34789999874221  122333332    35667


Q ss_pred             ceECcCCcEEEEEeCCCCeeeEEE
Q 008927          306 PKWSSKGELFFVTDRKNGFWNLHK  329 (548)
Q Consensus       306 ~~wspDG~L~~~sd~~~g~~~Ly~  329 (548)
                      ..|. |+..++.... ++.-.||-
T Consensus       667 v~f~-~~~~lvs~s~-D~~ikiWd  688 (793)
T PLN00181        667 VRFV-DSSTLVSSST-DNTLKLWD  688 (793)
T ss_pred             EEEe-CCCEEEEEEC-CCEEEEEe
Confidence            7886 6664444433 45444443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=96.04  E-value=1.7  Score=42.67  Aligned_cols=155  Identities=13%  Similarity=0.059  Sum_probs=83.2

Q ss_pred             eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (548)
Q Consensus       150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~  229 (548)
                      |++-|..|+-. -.+|+|...|+++- +-.+-|+..-    .-+..+.||+||+.|+-.+.+         +.+-.+|+.
T Consensus        31 Fs~~G~~lAvG-c~nG~vvI~D~~T~-~iar~lsaH~----~pi~sl~WS~dgr~LltsS~D---------~si~lwDl~   95 (405)
T KOG1273|consen   31 FSRWGDYLAVG-CANGRVVIYDFDTF-RIARMLSAHV----RPITSLCWSRDGRKLLTSSRD---------WSIKLWDLL   95 (405)
T ss_pred             eccCcceeeee-ccCCcEEEEEcccc-chhhhhhccc----cceeEEEecCCCCEeeeecCC---------ceeEEEecc
Confidence            44556555543 34678888888762 3334454431    236678999999998775433         468888998


Q ss_pred             CCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCC-cccCCcCceE
Q 008927          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT-IVESPTEPKW  308 (548)
Q Consensus       230 ~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~-~~~~~~~~~w  308 (548)
                      .|..  .+++.-. .-+....|.|-.+..+.+..-       ...-++.++.. +.   .+++...+.. .......-.|
T Consensus        96 ~gs~--l~rirf~-spv~~~q~hp~k~n~~va~~~-------~~sp~vi~~s~-~~---h~~Lp~d~d~dln~sas~~~f  161 (405)
T KOG1273|consen   96 KGSP--LKRIRFD-SPVWGAQWHPRKRNKCVATIM-------EESPVVIDFSD-PK---HSVLPKDDDGDLNSSASHGVF  161 (405)
T ss_pred             CCCc--eeEEEcc-CccceeeeccccCCeEEEEEe-------cCCcEEEEecC-Cc---eeeccCCCccccccccccccc
Confidence            8862  3444322 224455677755544433311       12245666653 32   3455443311 0011122247


Q ss_pred             CcCCcEEEEEeCCCCeeeEEEEeccCCe
Q 008927          309 SSKGELFFVTDRKNGFWNLHKWIESNNE  336 (548)
Q Consensus       309 spDG~L~~~sd~~~g~~~Ly~~d~~~g~  336 (548)
                      .+-|+.++..+. -|+  |..++.++-+
T Consensus       162 dr~g~yIitGts-KGk--llv~~a~t~e  186 (405)
T KOG1273|consen  162 DRRGKYIITGTS-KGK--LLVYDAETLE  186 (405)
T ss_pred             cCCCCEEEEecC-cce--EEEEecchhe
Confidence            788885555443 454  4445554544

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.02  E-value=0.33  Score=47.04  Aligned_cols=205  Identities=18%  Similarity=0.274  Sum_probs=100.6

Q ss_pred             HHhcCCCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCC-cccCCCCCCccccceeeCCeeeEEECCEEEEE
Q 008927           83 VVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEP-SDITPKEYAVRTTAQEYGGGAFRIFGDTVIFS  160 (548)
Q Consensus        83 ~l~~~~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~-~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~  160 (548)
                      .|......++.+.+.| .+.+|.|.+.+     ..|+..+..  |+. +.+.-.++      ++|-|-.| ..++.++..
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~-----~~i~els~~--G~vlr~i~l~g~------~D~EgI~y-~g~~~~vl~   81 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEP-----GEIYELSLD--GKVLRRIPLDGF------GDYEGITY-LGNGRYVLS   81 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTT-----TEEEEEETT----EEEEEE-SS-------SSEEEEEE--STTEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCC-----CEEEEEcCC--CCEEEEEeCCCC------CCceeEEE-ECCCEEEEE
Confidence            4444445688999999 88899888543     236666655  333 22211111      12333334 245577777


Q ss_pred             eCCCCeEEEEeCCCCCCC--c---eecCCCC-CCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC--CCCC
Q 008927          161 NYKDQRLYKHSIDSKDSS--P---LPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL--NGQN  232 (548)
Q Consensus       161 ~~~~~~Ly~~~~~~~~~~--~---~~lT~~~-~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl--~~g~  232 (548)
                      ++++++|+.+.++.....  .   +.++-.. ......+-.++|+|.+++++.+.|+..       ..||.++.  ....
T Consensus        82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P-------~~l~~~~~~~~~~~  154 (248)
T PF06977_consen   82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP-------KRLYEVNGFPGGFD  154 (248)
T ss_dssp             ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS-------EEEEEEESTT-SS-
T ss_pred             EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC-------hhhEEEccccCccc
Confidence            878899999888432011  1   2232111 001234667899999999888766532       46888887  2222


Q ss_pred             ccCcEEeee-----cC---CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCC---Cccc
Q 008927          233 IQEPKVLVS-----GS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP---TIVE  301 (548)
Q Consensus       233 ~~~~~~L~~-----~~---~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~---~~~~  301 (548)
                         ......     ..   .-.+...+.|....|..++ +.      ...|.++|.  +|++.....+..+..   ....
T Consensus       155 ---~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS-~e------s~~l~~~d~--~G~~~~~~~L~~g~~gl~~~~~  222 (248)
T PF06977_consen  155 ---LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILS-DE------SRLLLELDR--QGRVVSSLSLDRGFHGLSKDIP  222 (248)
T ss_dssp             ----EEEE-HHHH-HT--SS---EEEEETTTTEEEEEE-TT------TTEEEEE-T--T--EEEEEE-STTGGG-SS---
T ss_pred             ---eeeccccccccccceeccccceEEcCCCCeEEEEE-CC------CCeEEEECC--CCCEEEEEEeCCcccCcccccC
Confidence               111110     01   1135567788777777666 21      346777774  465434444444210   0001


Q ss_pred             CCcCceECcCCcEEEEEeC
Q 008927          302 SPTEPKWSSKGELFFVTDR  320 (548)
Q Consensus       302 ~~~~~~wspDG~L~~~sd~  320 (548)
                      .....++.+||+||++++.
T Consensus       223 QpEGIa~d~~G~LYIvsEp  241 (248)
T PF06977_consen  223 QPEGIAFDPDGNLYIVSEP  241 (248)
T ss_dssp             SEEEEEE-TT--EEEEETT
T ss_pred             CccEEEECCCCCEEEEcCC
Confidence            2344689999999998875

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK13613 lipoprotein LpqB; Provisional

Probab=95.96  E-value=0.31  Score=53.37  Aligned_cols=162  Identities=15%  Similarity=0.118  Sum_probs=96.1

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCC----ceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeE-E
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE-I  223 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~----~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~-l  223 (548)
                      +.+.++..+++.......||+=++.++ ++    .+.+...     .++..|.|+++| +|..+ +....     ..+ |
T Consensus       369 avS~~g~~~A~v~~~~~~l~vg~~~~~-~~~~~~~~~~~~~-----~~Lt~PS~d~~g-~vWtv-d~~~~-----~~~vl  435 (599)
T PRK13613        369 AVSRDESRAAGISADGDSVYVGSLTPG-ASIGVHSWGVTAD-----GRLTSPSWDGRG-DLWVV-DRDPA-----DPRLL  435 (599)
T ss_pred             EEcCCCceEEEEcCCCcEEEEeccCCC-Cccccccceeecc-----CcccCCcCcCCC-CEEEe-cCCCC-----CceEE
Confidence            455678889999755557777665442 33    2333332     357888999988 56554 22111     123 3


Q ss_pred             EEEECCCCCccCcEEeee--cCC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC--CCc--eeeeEEEcCCC
Q 008927          224 VAIALNGQNIQEPKVLVS--GSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGD--VYKRVCVAGFD  296 (548)
Q Consensus       224 ~~idl~~g~~~~~~~L~~--~~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~--~g~--~~~~~~l~~~~  296 (548)
                      .++. .+|+   ...+..  -.+ .+...++|+||-|+|.+....     ...+|++.-+..  +|.  +.+.+.+....
T Consensus       436 ~v~~-~~G~---~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~-----g~~~v~va~V~R~~~G~~~l~~~~~l~~~l  506 (599)
T PRK13613        436 WLLQ-GDGE---PVEVRTPELDGHRVVAVRVARDGVRVALIVEKD-----GRRSLQIGRIVRDAKAVVSVEEFRSLAPEL  506 (599)
T ss_pred             EEEc-CCCc---EEEeeccccCCCEeEEEEECCCccEEEEEEecC-----CCcEEEEEEEEeCCCCcEEeeccEEeccCC
Confidence            3443 3555   332321  112 467889999999999987332     246788877654  342  22233333322


Q ss_pred             CCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCe
Q 008927          297 PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE  336 (548)
Q Consensus       297 ~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~  336 (548)
                          ..+....|..++.|+++.....+...++++++++..
T Consensus       507 ----~~v~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~  542 (599)
T PRK13613        507 ----EDVTDMSWAGDSQLVVLGREEGGVQQARYVQVDGST  542 (599)
T ss_pred             ----CccceeEEcCCCEEEEEeccCCCCcceEEEecCCcC
Confidence                346788999999887765332456778888886554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=95.93  E-value=1.2  Score=42.61  Aligned_cols=136  Identities=7%  Similarity=-0.076  Sum_probs=72.1

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      .|.+...-++++...+..+-+.|.-.  +++..-+...    .......|||||+.+++...+         ..|-.+|.
T Consensus        71 ~w~~~~~d~~atas~dk~ir~wd~r~--~k~~~~i~~~----~eni~i~wsp~g~~~~~~~kd---------D~it~id~  135 (313)
T KOG1407|consen   71 CWDPKHPDLFATASGDKTIRIWDIRS--GKCTARIETK----GENINITWSPDGEYIAVGNKD---------DRITFIDA  135 (313)
T ss_pred             eeCCCCCcceEEecCCceEEEEEecc--CcEEEEeecc----CcceEEEEcCCCCEEEEecCc---------ccEEEEEe
Confidence            45554444666655555555555554  5555444331    223445799999998886322         36888888


Q ss_pred             CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      .+-+   ...-.+..-+.....|+-++. +.|+...       ...+-++....   ++....+...+    ....-..|
T Consensus       136 r~~~---~~~~~~~~~e~ne~~w~~~nd-~Fflt~G-------lG~v~ILsyps---Lkpv~si~AH~----snCicI~f  197 (313)
T KOG1407|consen  136 RTYK---IVNEEQFKFEVNEISWNNSND-LFFLTNG-------LGCVEILSYPS---LKPVQSIKAHP----SNCICIEF  197 (313)
T ss_pred             cccc---eeehhcccceeeeeeecCCCC-EEEEecC-------CceEEEEeccc---cccccccccCC----cceEEEEE
Confidence            7654   211122222334556774444 6666521       23444444432   22233343333    33455789


Q ss_pred             CcCCcEEEE
Q 008927          309 SSKGELFFV  317 (548)
Q Consensus       309 spDG~L~~~  317 (548)
                      +|||+.+.+
T Consensus       198 ~p~GryfA~  206 (313)
T KOG1407|consen  198 DPDGRYFAT  206 (313)
T ss_pred             CCCCceEee
Confidence            999984433

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=95.91  E-value=1.8  Score=42.01  Aligned_cols=198  Identities=12%  Similarity=0.070  Sum_probs=110.3

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCC
Q 008927          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (548)
Q Consensus       192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~  271 (548)
                      .+.++.|++|+++|+-.+.+         ..|.++|.-+.+.  ...|.-...++..-++||.|+.+|.-..+       
T Consensus        57 Ki~~~~ws~Dsr~ivSaSqD---------GklIvWDs~TtnK--~haipl~s~WVMtCA~sPSg~~VAcGGLd-------  118 (343)
T KOG0286|consen   57 KIYAMDWSTDSRRIVSASQD---------GKLIVWDSFTTNK--VHAIPLPSSWVMTCAYSPSGNFVACGGLD-------  118 (343)
T ss_pred             ceeeeEecCCcCeEEeeccC---------CeEEEEEcccccc--eeEEecCceeEEEEEECCCCCeEEecCcC-------
Confidence            46678899999998775443         3688899988762  44555555577888999999988854322       


Q ss_pred             CceEEEEEecC---CCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeeccc-cccc
Q 008927          272 KAELWVGYISE---NGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEF  347 (548)
Q Consensus       272 ~~~L~v~~~~~---~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~-~~d~  347 (548)
                       +..-++++..   +|.....+.+.+..    ..++-..|.+|+.|+-.    +|-....++|+++|+....... ..|+
T Consensus       119 -N~Csiy~ls~~d~~g~~~v~r~l~gHt----gylScC~f~dD~~ilT~----SGD~TCalWDie~g~~~~~f~GH~gDV  189 (343)
T KOG0286|consen  119 -NKCSIYPLSTRDAEGNVRVSRELAGHT----GYLSCCRFLDDNHILTG----SGDMTCALWDIETGQQTQVFHGHTGDV  189 (343)
T ss_pred             -ceeEEEecccccccccceeeeeecCcc----ceeEEEEEcCCCceEec----CCCceEEEEEcccceEEEEecCCcccE
Confidence             2344455542   23222345566654    45666788888876533    3444677788888876554421 1121


Q ss_pred             CCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eecCCCceeEee--eecCCEEEEEEecCCCCC
Q 008927          348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPS  424 (548)
Q Consensus       348 ~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~  424 (548)
                      -         .+++.|  ++++.++ +..-+....  +.|+..+.-. .......++..+  -++|..  |...+.+.. 
T Consensus       190 ~---------slsl~p--~~~ntFv-Sg~cD~~ak--lWD~R~~~c~qtF~ghesDINsv~ffP~G~a--fatGSDD~t-  252 (343)
T KOG0286|consen  190 M---------SLSLSP--SDGNTFV-SGGCDKSAK--LWDVRSGQCVQTFEGHESDINSVRFFPSGDA--FATGSDDAT-  252 (343)
T ss_pred             E---------EEecCC--CCCCeEE-eccccccee--eeeccCcceeEeecccccccceEEEccCCCe--eeecCCCce-
Confidence            1         122332  1344433 333344444  4466666433 333334456555  355543  333333333 


Q ss_pred             eEEEEEcCCC
Q 008927          425 SVAKVTLDDH  434 (548)
Q Consensus       425 ~l~~~d~~~~  434 (548)
                       .-.+|+...
T Consensus       253 -cRlyDlRaD  261 (343)
T KOG0286|consen  253 -CRLYDLRAD  261 (343)
T ss_pred             -eEEEeecCC
Confidence             344565443

>PRK13614 lipoprotein LpqB; Provisional

Probab=95.80  E-value=0.37  Score=52.31  Aligned_cols=164  Identities=17%  Similarity=0.129  Sum_probs=95.6

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +.+.++..++|.......||.....   +..+.+...     ..+..|.|+++| +|..+ .+..      ...|.++.-
T Consensus       349 avS~~g~~~A~~~~~~~~l~~~~~g---~~~~~~~~g-----~~Lt~PS~d~~g-~vWtv-~~g~------~~~vv~~~~  412 (573)
T PRK13614        349 AESPVSQTVAFLNGSRTTLYTVSPG---QPARALTSG-----STLTRPSFSPQD-WVWTA-GPGG------NGRIVAYRP  412 (573)
T ss_pred             eecCCCceEEEecCCCcEEEEecCC---CcceeeecC-----CCccCCcccCCC-CEEEe-eCCC------CceEEEEec
Confidence            4556788899987544588887763   556665543     257788999998 66554 3321      125666554


Q ss_pred             CCC-CccCcE--Eee-e-cC-CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC--CCc---eeeeEEEcCCCC
Q 008927          229 NGQ-NIQEPK--VLV-S-GS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGD---VYKRVCVAGFDP  297 (548)
Q Consensus       229 ~~g-~~~~~~--~L~-~-~~-~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~--~g~---~~~~~~l~~~~~  297 (548)
                      .+. +.....  .+. . -. ..+...++|+||-++|.+....     ...+|++.-+..  +|.   +.+.+.+.. . 
T Consensus       413 ~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~-----g~~~V~va~V~R~~~G~P~~L~~~~~~~~-~-  485 (573)
T PRK13614        413 TGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQN-----GKSRVQVAGIVRNEDGTPRELTAPITLAA-D-  485 (573)
T ss_pred             CCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeC-----CccEEEEEEEEeCCCCCeEEccCceeccc-C-
Confidence            321 100001  111 1 11 1267889999999999887432     245688876653  343   111112211 1 


Q ss_pred             CcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeE
Q 008927          298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL  338 (548)
Q Consensus       298 ~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~  338 (548)
                         ..+....|..|+.|+.+.....+....+++.+..|..+
T Consensus       486 ---~~~~sl~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~~~  523 (573)
T PRK13614        486 ---SDADTGAWVGDSTVVVTKASATSNVVPELLSVDAGQPQ  523 (573)
T ss_pred             ---CCcceeEEcCCCEEEEEeccCCCcceEEEEEeCCCCcc
Confidence               35677899999987777543245566777777555544

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.76  E-value=1.7  Score=46.04  Aligned_cols=225  Identities=7%  Similarity=0.020  Sum_probs=116.2

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      .|+++|..|+-.. .++.+.+.|.... ...+.+...   ...+++.++|.  +..+.....+         ..|...|+
T Consensus       224 ~ws~~G~~LavG~-~~g~v~iwD~~~~-k~~~~~~~~---h~~rvg~laW~--~~~lssGsr~---------~~I~~~dv  287 (484)
T KOG0305|consen  224 KWSPDGSHLAVGT-SDGTVQIWDVKEQ-KKTRTLRGS---HASRVGSLAWN--SSVLSSGSRD---------GKILNHDV  287 (484)
T ss_pred             EECCCCCEEEEee-cCCeEEEEehhhc-cccccccCC---cCceeEEEecc--CceEEEecCC---------CcEEEEEE
Confidence            6777888777653 4567777777542 233333331   13578888898  2333332211         35667777


Q ss_pred             CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      ...+.. .+.+......+....|++||+++| ..   .    ..+.+++.|.....   ....+....    ..+-...|
T Consensus       288 R~~~~~-~~~~~~H~qeVCgLkws~d~~~lA-SG---g----nDN~~~Iwd~~~~~---p~~~~~~H~----aAVKA~aw  351 (484)
T KOG0305|consen  288 RISQHV-VSTLQGHRQEVCGLKWSPDGNQLA-SG---G----NDNVVFIWDGLSPE---PKFTFTEHT----AAVKALAW  351 (484)
T ss_pred             ecchhh-hhhhhcccceeeeeEECCCCCeec-cC---C----CccceEeccCCCcc---ccEEEeccc----eeeeEeee
Confidence            665411 122222333467789999999987 22   1    13567777764222   233444433    56778899


Q ss_pred             CcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEE-eCCeEEEEEE
Q 008927          309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGIL  386 (548)
Q Consensus       309 spDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~-~~g~~~L~~~  386 (548)
                      +|=-. |+.+.-. ..-..|..+|..+|+..........         ...+.|++   ..+.|+.+.- ....-.||.+
T Consensus       352 cP~q~~lLAsGGG-s~D~~i~fwn~~~g~~i~~vdtgsQ---------VcsL~Wsk---~~kEi~sthG~s~n~i~lw~~  418 (484)
T KOG0305|consen  352 CPWQSGLLATGGG-SADRCIKFWNTNTGARIDSVDTGSQ---------VCSLIWSK---KYKELLSTHGYSENQITLWKY  418 (484)
T ss_pred             CCCccCceEEcCC-CcccEEEEEEcCCCcEecccccCCc---------eeeEEEcC---CCCEEEEecCCCCCcEEEEec
Confidence            99755 7666432 3334577777767664332211111         12345554   4556654432 2233445554


Q ss_pred             ECCCCceEeecCCCceeEee--eecCCEEEEEEec
Q 008927          387 DDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGAS  419 (548)
Q Consensus       387 dl~~g~~~~l~~~~~~~~~~--s~d~~~l~~~~ss  419 (548)
                      .. -..+..+...-.-+-.+  ++|+..++..+..
T Consensus       419 ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D  452 (484)
T KOG0305|consen  419 PS-MKLVAELLGHTSRVLYLALSPDGETIVTGAAD  452 (484)
T ss_pred             cc-cceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence            32 11222332222223322  6777766555443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=95.75  E-value=5  Score=46.69  Aligned_cols=102  Identities=14%  Similarity=0.096  Sum_probs=59.8

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCC--CCCCceecCCCCC----CCCceecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDS--KDSSPLPITPDYG----EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE  222 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~--~~~~~~~lT~~~~----~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~  222 (548)
                      .|.+..+.++|.......-+.+.++.  .+.+.+.+.....    .....+-++.+-+|...|+++.+.         .+
T Consensus        28 ~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~---------Gd   98 (928)
T PF04762_consen   28 AFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALAS---------GD   98 (928)
T ss_pred             EEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECC---------ce
Confidence            55566677888765433213333321  0122233333210    012345566777887777666443         47


Q ss_pred             EEEE----ECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEE
Q 008927          223 IVAI----ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE  262 (548)
Q Consensus       223 l~~i----dl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~  262 (548)
                      |..+    +..+..   ...+..-+......+||||+..|+++.
T Consensus        99 i~~~~~~~~~~~~~---~E~VG~vd~GI~a~~WSPD~Ella~vT  139 (928)
T PF04762_consen   99 IILVREDPDPDEDE---IEIVGSVDSGILAASWSPDEELLALVT  139 (928)
T ss_pred             EEEEEccCCCCCce---eEEEEEEcCcEEEEEECCCcCEEEEEe
Confidence            8888    666665   666665555677789999999999876

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=95.74  E-value=0.49  Score=45.09  Aligned_cols=111  Identities=14%  Similarity=0.099  Sum_probs=67.0

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCC
Q 008927          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (548)
Q Consensus       193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~  272 (548)
                      ..++.|+|...-++++....        ..|-++|...++   ...-++...--..-.|||||+++++...        .
T Consensus        67 vdql~w~~~~~d~~atas~d--------k~ir~wd~r~~k---~~~~i~~~~eni~i~wsp~g~~~~~~~k--------d  127 (313)
T KOG1407|consen   67 VDQLCWDPKHPDLFATASGD--------KTIRIWDIRSGK---CTARIETKGENINITWSPDGEYIAVGNK--------D  127 (313)
T ss_pred             hhhheeCCCCCcceEEecCC--------ceEEEEEeccCc---EEEEeeccCcceEEEEcCCCCEEEEecC--------c
Confidence            34567888665555553321        257778888887   4433332222234579999999996642        2


Q ss_pred             ceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEe
Q 008927          273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWI  331 (548)
Q Consensus       273 ~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d  331 (548)
                      ..|-.+|... -     +.+......  ..+.+..|.-++.++|+++- .|.-+|..+.
T Consensus       128 D~it~id~r~-~-----~~~~~~~~~--~e~ne~~w~~~nd~Fflt~G-lG~v~ILsyp  177 (313)
T KOG1407|consen  128 DRITFIDART-Y-----KIVNEEQFK--FEVNEISWNNSNDLFFLTNG-LGCVEILSYP  177 (313)
T ss_pred             ccEEEEEecc-c-----ceeehhccc--ceeeeeeecCCCCEEEEecC-CceEEEEecc
Confidence            3577777653 1     112111101  23567789866669888876 7888888775

>COG4188 Predicted dienelactone hydrolase [General function prediction only]

Probab=95.68  E-value=0.022  Score=57.28  Aligned_cols=72  Identities=18%  Similarity=0.119  Sum_probs=52.7

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEcc-CccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG-GPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHG-GP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG  537 (548)
                      ..+++.....+.++.-++|.|....... ...++|+||+.|| ||.   ..+|.+-.+.||+.||+|..+++-||+-
T Consensus        39 ~~i~~~~~~r~~~~~v~~~~p~~~~~~~-~~~~~PlvvlshG~Gs~---~~~f~~~A~~lAs~Gf~Va~~~hpgs~~  111 (365)
T COG4188          39 VTITLNDPQRDRERPVDLRLPQGGTGTV-ALYLLPLVVLSHGSGSY---VTGFAWLAEHLASYGFVVAAPDHPGSNA  111 (365)
T ss_pred             EEEeccCcccCCccccceeccCCCcccc-ccCcCCeEEecCCCCCC---ccchhhhHHHHhhCceEEEeccCCCccc
Confidence            3455554313567888888886422110 1247899999999 665   6678899999999999999999999864

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=95.67  E-value=0.17  Score=54.74  Aligned_cols=129  Identities=16%  Similarity=0.184  Sum_probs=79.0

Q ss_pred             EEEEEeC---CCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCC
Q 008927          156 TVIFSNY---KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (548)
Q Consensus       156 ~i~F~~~---~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~  232 (548)
                      -.||...   +..+||..+-    ..|.+|..+.   -....-..|.|....++--+.+         ..+-.+|+.+|.
T Consensus       505 GyYFatas~D~tArLWs~d~----~~PlRifagh---lsDV~cv~FHPNs~Y~aTGSsD---------~tVRlWDv~~G~  568 (707)
T KOG0263|consen  505 GYYFATASHDQTARLWSTDH----NKPLRIFAGH---LSDVDCVSFHPNSNYVATGSSD---------RTVRLWDVSTGN  568 (707)
T ss_pred             ceEEEecCCCceeeeeeccc----CCchhhhccc---ccccceEEECCcccccccCCCC---------ceEEEEEcCCCc
Confidence            4677753   2348998775    3455554431   0112225689988765443222         245666888887


Q ss_pred             ccCcEEeeecC-CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcC
Q 008927          233 IQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK  311 (548)
Q Consensus       233 ~~~~~~L~~~~-~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspD  311 (548)
                         ..++..|. +-+...++||+|++|+--.        +...|.+.|+.. |.+  ...+.+..    ..+....||.|
T Consensus       569 ---~VRiF~GH~~~V~al~~Sp~Gr~LaSg~--------ed~~I~iWDl~~-~~~--v~~l~~Ht----~ti~SlsFS~d  630 (707)
T KOG0263|consen  569 ---SVRIFTGHKGPVTALAFSPCGRYLASGD--------EDGLIKIWDLAN-GSL--VKQLKGHT----GTIYSLSFSRD  630 (707)
T ss_pred             ---EEEEecCCCCceEEEEEcCCCceEeecc--------cCCcEEEEEcCC-Ccc--hhhhhccc----CceeEEEEecC
Confidence               66666553 3477889999999998322        235688889874 542  22233323    46778999999


Q ss_pred             CcEEEEE
Q 008927          312 GELFFVT  318 (548)
Q Consensus       312 G~L~~~s  318 (548)
                      |.++.+.
T Consensus       631 g~vLasg  637 (707)
T KOG0263|consen  631 GNVLASG  637 (707)
T ss_pred             CCEEEec
Confidence            9865554

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=95.64  E-value=0.11  Score=54.08  Aligned_cols=76  Identities=12%  Similarity=0.119  Sum_probs=45.5

Q ss_pred             eeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEE
Q 008927          239 LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT  318 (548)
Q Consensus       239 L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~s  318 (548)
                      +.-+.+......|||||++||.++.        ..-|.|++.+. -+   ...+-.   .++....-..||||||++++-
T Consensus       286 w~~~~g~in~f~FS~DG~~LA~VSq--------DGfLRvF~fdt-~e---Llg~mk---SYFGGLLCvcWSPDGKyIvtG  350 (636)
T KOG2394|consen  286 WHIGEGSINEFAFSPDGKYLATVSQ--------DGFLRIFDFDT-QE---LLGVMK---SYFGGLLCVCWSPDGKYIVTG  350 (636)
T ss_pred             eEeccccccceeEcCCCceEEEEec--------CceEEEeeccH-HH---HHHHHH---hhccceEEEEEcCCccEEEec
Confidence            3333344556789999999998883        24688888863 22   111111   111334557899999966664


Q ss_pred             eCCCCeeeEEEE
Q 008927          319 DRKNGFWNLHKW  330 (548)
Q Consensus       319 d~~~g~~~Ly~~  330 (548)
                      -. ++.-.+|.+
T Consensus       351 GE-DDLVtVwSf  361 (636)
T KOG2394|consen  351 GE-DDLVTVWSF  361 (636)
T ss_pred             CC-cceEEEEEe
Confidence            44 444555554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=95.55  E-value=2.2  Score=45.02  Aligned_cols=149  Identities=11%  Similarity=0.113  Sum_probs=82.4

Q ss_pred             ceeeCCCCCEEEEEEeccCCC---CCCceeEEEEEECCCCCccCcE-EeeecCCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927          195 DGIFDPRFNRYVTVREDRRQD---ALNSTTEIVAIALNGQNIQEPK-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (548)
Q Consensus       195 ~~~~SpDG~~i~~v~~~~~~~---~~~~~~~l~~idl~~g~~~~~~-~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~  270 (548)
                      .+.|.+-|..|+++....-|.   .-.....||.++..+..   .. .|. ..+-+....|||+|+..+.+.   .-|| 
T Consensus       222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s---~~V~L~-k~GPVhdv~W~~s~~EF~Vvy---GfMP-  293 (566)
T KOG2315|consen  222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES---VSVPLL-KEGPVHDVTWSPSGREFAVVY---GFMP-  293 (566)
T ss_pred             EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce---EEEecC-CCCCceEEEECCCCCEEEEEE---eccc-
Confidence            467999999887765432111   11124689999988433   22 222 223355679999999888554   2354 


Q ss_pred             CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCC
Q 008927          271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP  350 (548)
Q Consensus       271 ~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p  350 (548)
                        ..+-+.+++  +.  .+..+..      +......|+|.|+|+++.--++=..++-.+|..+  .+.|...++     
T Consensus       294 --Akvtifnlr--~~--~v~df~e------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~~a-----  354 (566)
T KOG2315|consen  294 --AKVTIFNLR--GK--PVFDFPE------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN--RKLIAKFKA-----  354 (566)
T ss_pred             --ceEEEEcCC--CC--EeEeCCC------CCccceEECCCCCEEEEeecCCCCCceEEEeccc--hhhcccccc-----
Confidence              457777876  32  1222222      2345678999999666653322122344556544  233332111     


Q ss_pred             cccccCcceeeeeecCCCCEEEEEEE
Q 008927          351 LWVFGINSYEIIQSHGEKNLIACSYR  376 (548)
Q Consensus       351 ~w~~~~~~~~~~~~~~d~~~l~~~~~  376 (548)
                         .+...+.|.|   ||.+|+...+
T Consensus       355 ---~~tt~~eW~P---dGe~flTATT  374 (566)
T KOG2315|consen  355 ---ANTTVFEWSP---DGEYFLTATT  374 (566)
T ss_pred             ---CCceEEEEcC---CCcEEEEEec
Confidence               1223356776   7887775543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=95.55  E-value=0.11  Score=50.74  Aligned_cols=139  Identities=9%  Similarity=0.026  Sum_probs=83.9

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      .|+|+|+.|+-.+  +.+|.+-|..+  -+..+|-.--    -.+.-..|+.|.-.|+++....        .-+.++++
T Consensus        15 ~fSp~g~yiAs~~--~yrlviRd~~t--lq~~qlf~cl----dki~yieW~ads~~ilC~~yk~--------~~vqvwsl   78 (447)
T KOG4497|consen   15 SFSPCGNYIASLS--RYRLVIRDSET--LQLHQLFLCL----DKIVYIEWKADSCHILCVAYKD--------PKVQVWSL   78 (447)
T ss_pred             eECCCCCeeeeee--eeEEEEeccch--hhHHHHHHHH----HHhhheeeeccceeeeeeeecc--------ceEEEEEe
Confidence            5788899888776  44666666544  3333332110    1234457999999999986543        34667777


Q ss_pred             CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      ...+.  .-.|.++.+..+..+|||||+.|.-.+ ..      ..+|-+-.+.+. +   -..+....    ..+....|
T Consensus        79 ~Qpew--~ckIdeg~agls~~~WSPdgrhiL~ts-eF------~lriTVWSL~t~-~---~~~~~~pK----~~~kg~~f  141 (447)
T KOG4497|consen   79 VQPEW--YCKIDEGQAGLSSISWSPDGRHILLTS-EF------DLRITVWSLNTQ-K---GYLLPHPK----TNVKGYAF  141 (447)
T ss_pred             eccee--EEEeccCCCcceeeeECCCcceEeeee-cc------eeEEEEEEeccc-e---eEEecccc----cCceeEEE
Confidence            66542  234666777777889999999887443 11      245555566532 1   22233222    44567889


Q ss_pred             CcCCcEEEE-EeC
Q 008927          309 SSKGELFFV-TDR  320 (548)
Q Consensus       309 spDG~L~~~-sd~  320 (548)
                      .|||++..+ +.+
T Consensus       142 ~~dg~f~ai~sRr  154 (447)
T KOG4497|consen  142 HPDGQFCAILSRR  154 (447)
T ss_pred             CCCCceeeeeecc
Confidence            999994444 443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=95.55  E-value=0.67  Score=43.91  Aligned_cols=146  Identities=10%  Similarity=0.038  Sum_probs=86.4

Q ss_pred             eEEECCEEEEEe-CCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          150 FRIFGDTVIFSN-YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       150 ~~~~~~~i~F~~-~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      |+-.+..|+=+. +++=+||-....   .+.+.|...     ....++.+|+||+.|... ..         ..|--+|.
T Consensus       151 wc~eD~~iLSSadd~tVRLWD~rTg---t~v~sL~~~-----s~VtSlEvs~dG~ilTia-~g---------ssV~Fwda  212 (334)
T KOG0278|consen  151 WCHEDKCILSSADDKTVRLWDHRTG---TEVQSLEFN-----SPVTSLEVSQDGRILTIA-YG---------SSVKFWDA  212 (334)
T ss_pred             EeccCceEEeeccCCceEEEEeccC---cEEEEEecC-----CCCcceeeccCCCEEEEe-cC---------ceeEEecc
Confidence            555555555533 223377755432   345555332     235677899999876442 21         34556676


Q ss_pred             CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEE-cCCCCCcccCCcCce
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-AGFDPTIVESPTEPK  307 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l-~~~~~~~~~~~~~~~  307 (548)
                      .+-.   .-.-...+-.+....++|+-.  .|+.-.      +...+|.+|..+ |+  +.-+. .+..    ..+...+
T Consensus       213 ksf~---~lKs~k~P~nV~SASL~P~k~--~fVaGg------ed~~~~kfDy~T-ge--Ei~~~nkgh~----gpVhcVr  274 (334)
T KOG0278|consen  213 KSFG---LLKSYKMPCNVESASLHPKKE--FFVAGG------EDFKVYKFDYNT-GE--EIGSYNKGHF----GPVHCVR  274 (334)
T ss_pred             cccc---ceeeccCccccccccccCCCc--eEEecC------cceEEEEEeccC-Cc--eeeecccCCC----CceEEEE
Confidence            6643   222223333456678999864  345522      135688889885 43  23332 3332    5678889


Q ss_pred             ECcCCcEEEEEeCCCCeeeEEEEec
Q 008927          308 WSSKGELFFVTDRKNGFWNLHKWIE  332 (548)
Q Consensus       308 wspDG~L~~~sd~~~g~~~Ly~~d~  332 (548)
                      |||||++|..-.. +|.-.||...+
T Consensus       275 FSPdGE~yAsGSE-DGTirlWQt~~  298 (334)
T KOG0278|consen  275 FSPDGELYASGSE-DGTIRLWQTTP  298 (334)
T ss_pred             ECCCCceeeccCC-CceEEEEEecC
Confidence            9999998887666 78888998875

>PRK10749 lysophospholipase L2; Provisional

Probab=95.53  E-value=0.03  Score=57.02  Aligned_cols=68  Identities=12%  Similarity=0.018  Sum_probs=49.3

Q ss_pred             ccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927          458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       458 ~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG  537 (548)
                      +..-|..+|... ||..++...+.|.+         ..|+||++||-....  ..|....+.++++||.|+.+|+||...
T Consensus        27 ~~~~~~~~~~~~-~g~~l~~~~~~~~~---------~~~~vll~HG~~~~~--~~y~~~~~~l~~~g~~v~~~D~~G~G~   94 (330)
T PRK10749         27 WRQREEAEFTGV-DDIPIRFVRFRAPH---------HDRVVVICPGRIESY--VKYAELAYDLFHLGYDVLIIDHRGQGR   94 (330)
T ss_pred             HhhccceEEEcC-CCCEEEEEEccCCC---------CCcEEEEECCccchH--HHHHHHHHHHHHCCCeEEEEcCCCCCC
Confidence            444566778876 99999998887631         237899999974322  234445567899999999999998643

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.53  E-value=2.7  Score=41.15  Aligned_cols=117  Identities=11%  Similarity=0.162  Sum_probs=67.5

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee--cCCceeeeEECCCCCEEEEEEecCCCCC
Q 008927          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMP  269 (548)
Q Consensus       192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~--~~~~~~~p~~SPDGk~La~~~~~~~~~p  269 (548)
                      ..+++.|+||.+.|+.+ .++       ...|+.++.++.-   .+.+.-  -.|. ..-.+.-+|+.++ +.  ..   
T Consensus        87 nvS~LTynp~~rtLFav-~n~-------p~~iVElt~~Gdl---irtiPL~g~~Dp-E~Ieyig~n~fvi-~d--ER---  148 (316)
T COG3204          87 NVSSLTYNPDTRTLFAV-TNK-------PAAIVELTKEGDL---IRTIPLTGFSDP-ETIEYIGGNQFVI-VD--ER---  148 (316)
T ss_pred             cccceeeCCCcceEEEe-cCC-------CceEEEEecCCce---EEEecccccCCh-hHeEEecCCEEEE-Ee--hh---
Confidence            37889999999987766 443       2579999988765   454431  1111 1224454555332 22  21   


Q ss_pred             CCCceEEEEEecCCCceee----eEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEe
Q 008927          270 WDKAELWVGYISENGDVYK----RVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWI  331 (548)
Q Consensus       270 ~~~~~L~v~~~~~~g~~~~----~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d  331 (548)
                        ...|++..++.+..+-.    ...+.... .+.......+|+|..+ |++..++  .--.||.++
T Consensus       149 --~~~l~~~~vd~~t~~~~~~~~~i~L~~~~-k~N~GfEGlA~d~~~~~l~~aKEr--~P~~I~~~~  210 (316)
T COG3204         149 --DRALYLFTVDADTTVISAKVQKIPLGTTN-KKNKGFEGLAWDPVDHRLFVAKER--NPIGIFEVT  210 (316)
T ss_pred             --cceEEEEEEcCCccEEeccceEEeccccC-CCCcCceeeecCCCCceEEEEEcc--CCcEEEEEe
Confidence              45788888876543211    11121111 1113466789999988 8888776  334677776

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=95.50  E-value=3.6  Score=42.49  Aligned_cols=233  Identities=9%  Similarity=0.023  Sum_probs=108.8

Q ss_pred             EECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCC
Q 008927          152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG  230 (548)
Q Consensus       152 ~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~  230 (548)
                      ..++.|++.. .++.||.++...  |+.. +....   .. -...+..  ++..|++...         ...|+.+|+++
T Consensus        63 v~~~~v~v~~-~~g~v~a~d~~t--G~~~W~~~~~---~~-~~~~p~v--~~~~v~v~~~---------~g~l~ald~~t  124 (377)
T TIGR03300        63 VAGGKVYAAD-ADGTVVALDAET--GKRLWRVDLD---ER-LSGGVGA--DGGLVFVGTE---------KGEVIALDAED  124 (377)
T ss_pred             EECCEEEEEC-CCCeEEEEEccC--CcEeeeecCC---CC-cccceEE--cCCEEEEEcC---------CCEEEEEECCC
Confidence            4566666554 457899999765  4432 11111   01 1123332  4566554322         14799999999


Q ss_pred             CCccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927          231 QNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (548)
Q Consensus       231 g~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws  309 (548)
                      |+   ...-.. .......|..  ++.+++ +..       ....|+.+|.+. |++. .+.-.............|...
T Consensus       125 G~---~~W~~~~~~~~~~~p~v--~~~~v~-v~~-------~~g~l~a~d~~t-G~~~-W~~~~~~~~~~~~~~~sp~~~  189 (377)
T TIGR03300       125 GK---ELWRAKLSSEVLSPPLV--ANGLVV-VRT-------NDGRLTALDAAT-GERL-WTYSRVTPALTLRGSASPVIA  189 (377)
T ss_pred             Cc---EeeeeccCceeecCCEE--ECCEEE-EEC-------CCCeEEEEEcCC-Ccee-eEEccCCCceeecCCCCCEEE
Confidence            87   322111 1223344555  244444 331       135799999874 5421 111111100000011233332


Q ss_pred             cCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccC--CCccccc-CcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927          310 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFS--RPLWVFG-INSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (548)
Q Consensus       310 pDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~--~p~w~~~-~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~  386 (548)
                       ++.+++...  .|  .|+.+|+++|+..--.......+  ....... ......     .++.||+.. .+  ..|+.+
T Consensus       190 -~~~v~~~~~--~g--~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-----~~~~vy~~~-~~--g~l~a~  256 (377)
T TIGR03300       190 -DGGVLVGFA--GG--KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-----DGGQVYAVS-YQ--GRVAAL  256 (377)
T ss_pred             -CCEEEEECC--CC--EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-----ECCEEEEEE-cC--CEEEEE
Confidence             343443332  23  68889988887532111000000  0000000 000111     355666543 33  368999


Q ss_pred             ECCCCceEeecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          387 DDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       387 dl~~g~~~~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      |+++|+..--.. .........+++++|+..    ....|+.+|.++++
T Consensus       257 d~~tG~~~W~~~-~~~~~~p~~~~~~vyv~~----~~G~l~~~d~~tG~  300 (377)
T TIGR03300       257 DLRSGRVLWKRD-ASSYQGPAVDDNRLYVTD----ADGVVVALDRRSGS  300 (377)
T ss_pred             ECCCCcEEEeec-cCCccCceEeCCEEEEEC----CCCeEEEEECCCCc
Confidence            999887542111 111222245677777654    23689999998886

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=95.47  E-value=1.7  Score=44.79  Aligned_cols=240  Identities=11%  Similarity=0.025  Sum_probs=121.2

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +|.-+|..|+.-+ .+|.+-..+.+|  .....|-..+    .-+..+.|.-+|..|+...-+         ..+.++|.
T Consensus       242 ~Wn~~G~~LatG~-~~G~~riw~~~G--~l~~tl~~Hk----gPI~slKWnk~G~yilS~~vD---------~ttilwd~  305 (524)
T KOG0273|consen  242 DWNNDGTLLATGS-EDGEARIWNKDG--NLISTLGQHK----GPIFSLKWNKKGTYILSGGVD---------GTTILWDA  305 (524)
T ss_pred             EecCCCCeEEEee-cCcEEEEEecCc--hhhhhhhccC----CceEEEEEcCCCCEEEeccCC---------ccEEEEec
Confidence            5655677777765 345444445555  4444444432    235567899999988764222         46788899


Q ss_pred             CCCCccCcEEeeecCCce-eeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          229 NGQNIQEPKVLVSGSDFY-AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~-~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      .+|+   ..+..+....- -...|--+-+   |+...      ....|+|..+..++.   ...+.+..    ..+....
T Consensus       306 ~~g~---~~q~f~~~s~~~lDVdW~~~~~---F~ts~------td~~i~V~kv~~~~P---~~t~~GH~----g~V~alk  366 (524)
T KOG0273|consen  306 HTGT---VKQQFEFHSAPALDVDWQSNDE---FATSS------TDGCIHVCKVGEDRP---VKTFIGHH----GEVNALK  366 (524)
T ss_pred             cCce---EEEeeeeccCCccceEEecCce---EeecC------CCceEEEEEecCCCc---ceeeeccc----CceEEEE
Confidence            8887   55544321110 1123332222   22211      234688888865432   44455544    5688899


Q ss_pred             ECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (548)
Q Consensus       308 wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d  387 (548)
                      |.|-|.|+..+.. ++...||.+.- ++....|.....++-...|++... ..+.|   ..+.++..+..++.  +.++|
T Consensus       367 ~n~tg~LLaS~Sd-D~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~-v~~n~---~~~~~l~sas~dst--V~lwd  438 (524)
T KOG0273|consen  367 WNPTGSLLASCSD-DGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGP-VTSNP---NMNLMLASASFDST--VKLWD  438 (524)
T ss_pred             ECCCCceEEEecC-CCeeEeeecCC-CcchhhhhhhccceeeEeecCCCC-ccCCC---cCCceEEEeecCCe--EEEEE
Confidence            9999996665443 56677776532 222222221111222223433111 11111   23334444444444  44557


Q ss_pred             CCCCce-EeecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          388 DFGHSL-SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       388 l~~g~~-~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      .+.|.. ..+......+..+  ++++++++. ++   .-..|...+...++
T Consensus       439 v~~gv~i~~f~kH~~pVysvafS~~g~ylAs-Gs---~dg~V~iws~~~~~  485 (524)
T KOG0273|consen  439 VESGVPIHTLMKHQEPVYSVAFSPNGRYLAS-GS---LDGCVHIWSTKTGK  485 (524)
T ss_pred             ccCCceeEeeccCCCceEEEEecCCCcEEEe-cC---CCCeeEeccccchh
Confidence            667753 3444333335554  666765532 22   23455555555555

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=95.41  E-value=0.75  Score=47.80  Aligned_cols=190  Identities=10%  Similarity=0.127  Sum_probs=97.4

Q ss_pred             CccCceEEcC-CCc---EEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCC-
Q 008927           89 KRLGGTAVDG-HGR---LIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK-  163 (548)
Q Consensus        89 ~~~~~~~~sp-g~~---i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~-  163 (548)
                      ..+.++.+|| |+.   .||.-..-...++..|+.+...  ...+..+  -|.+. .+    ..-|.+.|+.|.+.-.+ 
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~--s~l~tk~--lfk~~-~~----qLkW~~~g~~ll~l~~t~  244 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN--SVLVTKN--LFKVS-GV----QLKWQVLGKYLLVLVMTH  244 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC--Ceeeeee--eEeec-cc----EEEEecCCceEEEEEEEe
Confidence            4566778888 443   4444211112346667776432  1222211  11211 11    12466677877665322 


Q ss_pred             ---------CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCcc
Q 008927          164 ---------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ  234 (548)
Q Consensus       164 ---------~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~  234 (548)
                               ...||++++.+  ...+.....+    .-+.++.|.|++++.+.+..-+.       ..+-..|+.+.-  
T Consensus       245 ~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~----~pVhdf~W~p~S~~F~vi~g~~p-------a~~s~~~lr~Nl--  309 (561)
T COG5354         245 TKSNKSYFGESNLYLLRITE--RSIPVEKDLK----DPVHDFTWEPLSSRFAVISGYMP-------ASVSVFDLRGNL--  309 (561)
T ss_pred             eecccceeccceEEEEeecc--cccceecccc----ccceeeeecccCCceeEEecccc-------cceeecccccce--
Confidence                     24799998875  2222111111    23678899999999877753332       234455655542  


Q ss_pred             CcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcE
Q 008927          235 EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL  314 (548)
Q Consensus       235 ~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L  314 (548)
                       .-.+-+...  ..+.|||.+++|++...+.     ...++-+++..  |.   ..++.... .  ....-..|+|||++
T Consensus       310 -~~~~Pe~~r--NT~~fsp~~r~il~agF~n-----l~gni~i~~~~--~r---f~~~~~~~-~--~n~s~~~wspd~qF  373 (561)
T COG5354         310 -RFYFPEQKR--NTIFFSPHERYILFAGFDN-----LQGNIEIFDPA--GR---FKVAGAFN-G--LNTSYCDWSPDGQF  373 (561)
T ss_pred             -EEecCCccc--ccccccCcccEEEEecCCc-----cccceEEeccC--Cc---eEEEEEee-c--CCceEeeccCCceE
Confidence             222222221  2356899999998654322     23456666765  32   22221111 1  22344679999997


Q ss_pred             EEEE
Q 008927          315 FFVT  318 (548)
Q Consensus       315 ~~~s  318 (548)
                      |.+.
T Consensus       374 ~~~~  377 (561)
T COG5354         374 YDTD  377 (561)
T ss_pred             EEec
Confidence            6663

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=95.39  E-value=0.34  Score=51.76  Aligned_cols=160  Identities=13%  Similarity=0.095  Sum_probs=94.9

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +.+|+|..|++..-.+..||++..++. -..+.+-..+. .........++-|+..+++++.+.        .+|..+++
T Consensus       389 aiSPdg~~Ia~st~~~~~iy~L~~~~~-vk~~~v~~~~~-~~~~a~~i~ftid~~k~~~~s~~~--------~~le~~el  458 (691)
T KOG2048|consen  389 AISPDGNLIAISTVSRTKIYRLQPDPN-VKVINVDDVPL-ALLDASAISFTIDKNKLFLVSKNI--------FSLEEFEL  458 (691)
T ss_pred             ccCCCCCEEEEeeccceEEEEeccCcc-eeEEEeccchh-hhccceeeEEEecCceEEEEeccc--------ceeEEEEe
Confidence            567899999999877788999988742 22223322210 011233466888998887775332        46788888


Q ss_pred             CCCCccCcEEeeec--CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCc
Q 008927          229 NGQNIQEPKVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (548)
Q Consensus       229 ~~g~~~~~~~L~~~--~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~  306 (548)
                      ++..-.+..-+.+.  -+.......||||.+||-+.        ....|++++++. ++   ..++.... .  ..+...
T Consensus       459 ~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~--------t~g~I~v~nl~~-~~---~~~l~~rl-n--~~vTa~  523 (691)
T KOG2048|consen  459 ETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS--------TRGQIFVYNLET-LE---SHLLKVRL-N--IDVTAA  523 (691)
T ss_pred             cCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe--------ccceEEEEEccc-ce---eecchhcc-C--cceeee
Confidence            77651111112211  22356678899999999665        246899999984 43   23333211 1  345666


Q ss_pred             eECcCCc-EEEEEeCCCCeeeEEEEeccCCe
Q 008927          307 KWSSKGE-LFFVTDRKNGFWNLHKWIESNNE  336 (548)
Q Consensus       307 ~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~  336 (548)
                      .++|... -+.+.+. +  .++|-+|++..+
T Consensus       524 ~~~~~~~~~lvvats-~--nQv~efdi~~~~  551 (691)
T KOG2048|consen  524 AFSPFVRNRLVVATS-N--NQVFEFDIEARN  551 (691)
T ss_pred             eccccccCcEEEEec-C--CeEEEEecchhh
Confidence            7786654 3334332 2  378888875443

>COG0657 Aes Esterase/lipase [Lipid metabolism]

Probab=95.31  E-value=0.048  Score=55.05  Aligned_cols=63  Identities=19%  Similarity=0.217  Sum_probs=46.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCcc--ChHHHHHHhcCcEEEEeCCCCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL--NLSIQYWTSRGWAFVDVNYGGSTGL  538 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~--~~~~Q~~asrGyaVl~~NyRGStGy  538 (548)
                      ++..+...+|.|.. .    .....|+||++|||=+.......  ..-..+.+..||.|+.+|||=+..+
T Consensus        60 ~~~~~~~~~y~p~~-~----~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~  124 (312)
T COG0657          60 SGDGVPVRVYRPDR-K----AAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH  124 (312)
T ss_pred             CCCceeEEEECCCC-C----CCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC
Confidence            45557899999811 1    24568999999999766544333  3456777889999999999988775

>PRK13615 lipoprotein LpqB; Provisional

Probab=95.31  E-value=1.1  Score=48.57  Aligned_cols=157  Identities=10%  Similarity=0.039  Sum_probs=91.9

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +.+.++..++|.+. ++.||+=...   +..+.+...     ..+..|.|+++| +|..+ .+..      ...+.... 
T Consensus       340 avS~dg~~~A~v~~-~~~l~vg~~~---~~~~~~~~~-----~~Lt~PS~d~~g-~vWtv-~~g~------~~~l~~~~-  401 (557)
T PRK13615        340 TLSADGRQAAVRNA-SGVWSVGDGD---RDAVLLDTR-----PGLVAPSLDAQG-YVWST-PASD------PRGLVAWG-  401 (557)
T ss_pred             eEcCCCceEEEEcC-CceEEEecCC---CcceeeccC-----CccccCcCcCCC-CEEEE-eCCC------ceEEEEec-
Confidence            45567888999864 3455544332   455666543     247888999998 66554 3321      12333332 


Q ss_pred             CCCCccCcEEeee---cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc----e-eeeEEEcCCCCCcc
Q 008927          229 NGQNIQEPKVLVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD----V-YKRVCVAGFDPTIV  300 (548)
Q Consensus       229 ~~g~~~~~~~L~~---~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~----~-~~~~~l~~~~~~~~  300 (548)
                      .+|+   ...+.-   ....+...++|+||-|+|.+....     ...+|++.-+..++.    + .+.+.+....    
T Consensus       402 ~~G~---~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~-----g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l----  469 (557)
T PRK13615        402 PDGV---GHPVAVSWTATGRVVSLEVARDGARVLVQLETG-----AGPQLLVASIVRDGGVPTSLTTTPLELLASP----  469 (557)
T ss_pred             CCCc---eEEeeccccCCCeeEEEEeCCCccEEEEEEecC-----CCCEEEEEEEEeCCCcceEeeeccEEcccCc----
Confidence            2344   323311   112477889999999999886332     246788876654232    2 2223332222    


Q ss_pred             cCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCC
Q 008927          301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN  335 (548)
Q Consensus       301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g  335 (548)
                      ..+....|..|++|+.+.....+...++.+.+.+.
T Consensus       470 ~~v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g~  504 (557)
T PRK13615        470 GTPLDATWVDELDVATLTLAPDGERQVELHQVGGP  504 (557)
T ss_pred             CcceeeEEcCCCEEEEEeccCCCCceEEEEECCCc
Confidence            35677899999998887643244466788887543

>PLN02511 hydrolase

Probab=95.29  E-value=0.053  Score=56.55  Aligned_cols=70  Identities=16%  Similarity=0.170  Sum_probs=43.2

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      +...++.. ||..+....+.+....    .....|+||++||...+.....+......+.++||.|+.+|+||-.
T Consensus        72 ~re~l~~~-DG~~~~ldw~~~~~~~----~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G  141 (388)
T PLN02511         72 RRECLRTP-DGGAVALDWVSGDDRA----LPADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCA  141 (388)
T ss_pred             eEEEEECC-CCCEEEEEecCccccc----CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence            34456676 8888774333321110    0123489999999866543211223445567899999999999953

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.26  E-value=2.8  Score=39.80  Aligned_cols=189  Identities=15%  Similarity=0.012  Sum_probs=93.2

Q ss_pred             EECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCC
Q 008927          152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG  230 (548)
Q Consensus       152 ~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~  230 (548)
                      ++++.|+.. ..++.||.++..+  |+.. ......   ... ..+  ..++..|++...+         +.|+.+|+.+
T Consensus        34 ~~~~~v~~~-~~~~~l~~~d~~t--G~~~W~~~~~~---~~~-~~~--~~~~~~v~v~~~~---------~~l~~~d~~t   95 (238)
T PF13360_consen   34 PDGGRVYVA-SGDGNLYALDAKT--GKVLWRFDLPG---PIS-GAP--VVDGGRVYVGTSD---------GSLYALDAKT   95 (238)
T ss_dssp             EETTEEEEE-ETTSEEEEEETTT--SEEEEEEECSS---CGG-SGE--EEETTEEEEEETT---------SEEEEEETTT
T ss_pred             EeCCEEEEE-cCCCEEEEEECCC--CCEEEEeeccc---ccc-cee--eecccccccccce---------eeeEecccCC
Confidence            366776665 4678999999865  4432 222110   111 112  2345566554322         3799999999


Q ss_pred             CCccCcEEe-eecC----CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCccc----
Q 008927          231 QNIQEPKVL-VSGS----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE----  301 (548)
Q Consensus       231 g~~~~~~~L-~~~~----~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~----  301 (548)
                      |+   ..-- ....    ..........+|+++++.. .       ...|+.+|++ +|++.-...+ ..... ..    
T Consensus        96 G~---~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~g~l~~~d~~-tG~~~w~~~~-~~~~~-~~~~~~  161 (238)
T PF13360_consen   96 GK---VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT-S-------SGKLVALDPK-TGKLLWKYPV-GEPRG-SSPISS  161 (238)
T ss_dssp             SC---EEEEEEE-SSCTCSTB--SEEEEETTEEEEEE-T-------CSEEEEEETT-TTEEEEEEES-STT-S-S--EEE
T ss_pred             cc---eeeeeccccccccccccccCceEecCEEEEEe-c-------cCcEEEEecC-CCcEEEEeec-CCCCC-Ccceee
Confidence            97   3322 1211    1222233333577765443 1       4679999988 4652111222 21100 00    


Q ss_pred             ---CCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC
Q 008927          302 ---SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (548)
Q Consensus       302 ---~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~  378 (548)
                         ....+... +|.+| +... .+.  ++.+|+++|+..- ...   .....       ..+..   +++.|++.. . 
T Consensus       162 ~~~~~~~~~~~-~~~v~-~~~~-~g~--~~~~d~~tg~~~w-~~~---~~~~~-------~~~~~---~~~~l~~~~-~-  220 (238)
T PF13360_consen  162 FSDINGSPVIS-DGRVY-VSSG-DGR--VVAVDLATGEKLW-SKP---ISGIY-------SLPSV---DGGTLYVTS-S-  220 (238)
T ss_dssp             ETTEEEEEECC-TTEEE-EECC-TSS--EEEEETTTTEEEE-EEC---SS-EC-------ECEEC---CCTEEEEEE-T-
T ss_pred             ecccccceEEE-CCEEE-EEcC-CCe--EEEEECCCCCEEE-Eec---CCCcc-------CCcee---eCCEEEEEe-C-
Confidence               01223333 45344 4433 332  6777988887431 111   01100       00221   667776654 3 


Q ss_pred             CeEEEEEEECCCCceE
Q 008927          379 GRSYLGILDDFGHSLS  394 (548)
Q Consensus       379 g~~~L~~~dl~~g~~~  394 (548)
                       ..+|+.+|+.+|+..
T Consensus       221 -~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  221 -DGRLYALDLKTGKVV  235 (238)
T ss_dssp             -TTEEEEEETTTTEEE
T ss_pred             -CCEEEEEECCCCCEE
Confidence             357899999999753

...

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.25  E-value=3.1  Score=40.37  Aligned_cols=120  Identities=17%  Similarity=0.192  Sum_probs=64.0

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee-ecCCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (548)
Q Consensus       192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~-~~~~~~~~p~~SPDGk~La~~~~~~~~~p~  270 (548)
                      ..+.+.|.||.+.|++|. ++.       ..|+.+++++.-   .+.+. .+.+-+..-.+.-+|+ ++... ..     
T Consensus        23 e~SGLTy~pd~~tLfaV~-d~~-------~~i~els~~G~v---lr~i~l~g~~D~EgI~y~g~~~-~vl~~-Er-----   84 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAVQ-DEP-------GEIYELSLDGKV---LRRIPLDGFGDYEGITYLGNGR-YVLSE-ER-----   84 (248)
T ss_dssp             -EEEEEEETTTTEEEEEE-TTT-------TEEEEEETT--E---EEEEE-SS-SSEEEEEE-STTE-EEEEE-TT-----
T ss_pred             CccccEEcCCCCeEEEEE-CCC-------CEEEEEcCCCCE---EEEEeCCCCCCceeEEEECCCE-EEEEE-cC-----
Confidence            377889999999999984 332       479999987543   44543 2323345556666664 33233 21     


Q ss_pred             CCceEEEEEecCCCc-ee--eeEEEc-CCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEec
Q 008927          271 DKAELWVGYISENGD-VY--KRVCVA-GFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE  332 (548)
Q Consensus       271 ~~~~L~v~~~~~~g~-~~--~~~~l~-~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~  332 (548)
                       ...|++++++..+. +.  ....+. +........+..++|+|.++ |+++.++  .-..||.++.
T Consensus        85 -~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~--~P~~l~~~~~  148 (248)
T PF06977_consen   85 -DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER--KPKRLYEVNG  148 (248)
T ss_dssp             -TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES--SSEEEEEEES
T ss_pred             -CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC--CChhhEEEcc
Confidence             35799998854332 11  111121 10000003356789999877 8777665  2345787775

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=95.23  E-value=3.1  Score=40.07  Aligned_cols=165  Identities=13%  Similarity=0.140  Sum_probs=87.1

Q ss_pred             eecceeeCCC-CCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcE-EeeecC-CceeeeEECCCCCEEEEEEecCCCC
Q 008927          192 SYADGIFDPR-FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK-VLVSGS-DFYAFPRMDPRGERMAWIEWHHPNM  268 (548)
Q Consensus       192 ~~~~~~~SpD-G~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~-~L~~~~-~~~~~p~~SPDGk~La~~~~~~~~~  268 (548)
                      |.-.++|.|- |. |++.+...        ..|..+++.++..-+.+ .|.++. ..+...+|||.|++||-.+.+.   
T Consensus        16 r~W~~awhp~~g~-ilAscg~D--------k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~---   83 (312)
T KOG0645|consen   16 RVWSVAWHPGKGV-ILASCGTD--------KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA---   83 (312)
T ss_pred             cEEEEEeccCCce-EEEeecCC--------ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc---
Confidence            5667789997 54 55544332        24555555543210012 222222 2356789999999998655332   


Q ss_pred             CCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEee---ccccc
Q 008927          269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAI---YSLDA  345 (548)
Q Consensus       269 p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l---~~~~~  345 (548)
                         ..-||-  - .++++.....|.+..    ..+-..+||++|.++....| +----|+.++ ++++..-+   .+...
T Consensus        84 ---t~~Iw~--k-~~~efecv~~lEGHE----nEVK~Vaws~sG~~LATCSR-DKSVWiWe~d-eddEfec~aVL~~Htq  151 (312)
T KOG0645|consen   84 ---TVVIWK--K-EDGEFECVATLEGHE----NEVKCVAWSASGNYLATCSR-DKSVWIWEID-EDDEFECIAVLQEHTQ  151 (312)
T ss_pred             ---eEEEee--c-CCCceeEEeeeeccc----cceeEEEEcCCCCEEEEeeC-CCeEEEEEec-CCCcEEEEeeeccccc
Confidence               122332  1 245544444555543    45677899999996666555 3333355555 34454322   22222


Q ss_pred             ccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE
Q 008927          346 EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS  394 (548)
Q Consensus       346 d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~  394 (548)
                      |.....|         -    +..-|+|+...+..-.+|+-+. ++.+.
T Consensus       152 DVK~V~W---------H----Pt~dlL~S~SYDnTIk~~~~~~-dddW~  186 (312)
T KOG0645|consen  152 DVKHVIW---------H----PTEDLLFSCSYDNTIKVYRDED-DDDWE  186 (312)
T ss_pred             cccEEEE---------c----CCcceeEEeccCCeEEEEeecC-CCCee
Confidence            3333333         2    2345777777777777776654 44443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=95.21  E-value=0.15  Score=49.72  Aligned_cols=105  Identities=23%  Similarity=0.216  Sum_probs=66.2

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCce-------eeeEECCCCCEEEEEEecC
Q 008927          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY-------AFPRMDPRGERMAWIEWHH  265 (548)
Q Consensus       193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~-------~~p~~SPDGk~La~~~~~~  265 (548)
                      ...++|||+..+++-++.|.       ...||-+|++-...+++..|..++-+.       .-..+||.|+.||...   
T Consensus       281 V~~~aFsn~S~r~vtvSkDG-------~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~---  350 (420)
T KOG2096|consen  281 VLAAAFSNSSTRAVTVSKDG-------KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF---  350 (420)
T ss_pred             eeeeeeCCCcceeEEEecCC-------cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec---
Confidence            44678999999998887653       357888777654333366666553221       2346899999988432   


Q ss_pred             CCCCCCCceEEEEEecCCCce-eeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeC
Q 008927          266 PNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR  320 (548)
Q Consensus       266 ~~~p~~~~~L~v~~~~~~g~~-~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~  320 (548)
                            ++.|.++.-+. |+. .+...+.+      +.+....|++||+ ++-..|+
T Consensus       351 ------gs~l~~~~se~-g~~~~~~e~~h~------~~Is~is~~~~g~~~atcGdr  394 (420)
T KOG2096|consen  351 ------GSDLKVFASED-GKDYPELEDIHS------TTISSISYSSDGKYIATCGDR  394 (420)
T ss_pred             ------CCceEEEEccc-CccchhHHHhhc------CceeeEEecCCCcEEeeecce
Confidence                  45677776663 541 11111111      4578899999999 5555555

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=95.14  E-value=4.7  Score=41.69  Aligned_cols=145  Identities=12%  Similarity=0.094  Sum_probs=75.6

Q ss_pred             eCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEe
Q 008927          161 NYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL  239 (548)
Q Consensus       161 ~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L  239 (548)
                      ...++.|+++.++.  ..| ..+...    ...+..+.|.|.|..|+--+.|.       .-.||.+.-.+.    ...|
T Consensus       335 s~td~~i~V~kv~~--~~P~~t~~GH----~g~V~alk~n~tg~LLaS~SdD~-------TlkiWs~~~~~~----~~~l  397 (524)
T KOG0273|consen  335 SSTDGCIHVCKVGE--DRPVKTFIGH----HGEVNALKWNPTGSLLASCSDDG-------TLKIWSMGQSNS----VHDL  397 (524)
T ss_pred             cCCCceEEEEEecC--CCcceeeecc----cCceEEEEECCCCceEEEecCCC-------eeEeeecCCCcc----hhhh
Confidence            44567777777765  333 333332    13466778999998765543331       234554332221    2233


Q ss_pred             eecCCceeeeEECCCCCEEEEEEecCCCCC----C--CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc
Q 008927          240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMP----W--DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (548)
Q Consensus       240 ~~~~~~~~~p~~SPDGk~La~~~~~~~~~p----~--~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~  313 (548)
                      .....-+....|||+|.-    .+ .+++.    |  -.+-+-+.|+.. |.  ....+....    +.+..+.|||||+
T Consensus       398 ~~Hskei~t~~wsp~g~v----~~-n~~~~~~l~sas~dstV~lwdv~~-gv--~i~~f~kH~----~pVysvafS~~g~  465 (524)
T KOG0273|consen  398 QAHSKEIYTIKWSPTGPV----TS-NPNMNLMLASASFDSTVKLWDVES-GV--PIHTLMKHQ----EPVYSVAFSPNGR  465 (524)
T ss_pred             hhhccceeeEeecCCCCc----cC-CCcCCceEEEeecCCeEEEEEccC-Cc--eeEeeccCC----CceEEEEecCCCc
Confidence            322222344589999872    11 12110    0  123455666663 43  122233333    6788999999999


Q ss_pred             EEEEEeCCCCeeeEEEEeccCCee
Q 008927          314 LFFVTDRKNGFWNLHKWIESNNEV  337 (548)
Q Consensus       314 L~~~sd~~~g~~~Ly~~d~~~g~~  337 (548)
                      .+..-+. +|.-+||  +..+++.
T Consensus       466 ylAsGs~-dg~V~iw--s~~~~~l  486 (524)
T KOG0273|consen  466 YLASGSL-DGCVHIW--STKTGKL  486 (524)
T ss_pred             EEEecCC-CCeeEec--cccchhe
Confidence            6656555 5654444  4445554

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=95.05  E-value=0.53  Score=51.14  Aligned_cols=153  Identities=17%  Similarity=0.150  Sum_probs=87.5

Q ss_pred             eeEEECCEEEEEeC-CCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNY-KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~-~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      +|+|+.+.|+=.+. ..-+||-++...    ...+-.+   ...-..+..|+|-|  ++|..-.++     ...+||..|
T Consensus       458 sFsPd~rfLlScSED~svRLWsl~t~s----~~V~y~G---H~~PVwdV~F~P~G--yYFatas~D-----~tArLWs~d  523 (707)
T KOG0263|consen  458 SFSPDRRFLLSCSEDSSVRLWSLDTWS----CLVIYKG---HLAPVWDVQFAPRG--YYFATASHD-----QTARLWSTD  523 (707)
T ss_pred             eecccccceeeccCCcceeeeecccce----eEEEecC---CCcceeeEEecCCc--eEEEecCCC-----ceeeeeecc
Confidence            57777765554442 334899877643    1111111   11224466789987  455543332     346899887


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      -...    .|++...-.-+.-..|.|++.++|=-+.        ...+.+.|+.. |.  .+|++.|..    ..+....
T Consensus       524 ~~~P----lRifaghlsDV~cv~FHPNs~Y~aTGSs--------D~tVRlWDv~~-G~--~VRiF~GH~----~~V~al~  584 (707)
T KOG0263|consen  524 HNKP----LRIFAGHLSDVDCVSFHPNSNYVATGSS--------DRTVRLWDVST-GN--SVRIFTGHK----GPVTALA  584 (707)
T ss_pred             cCCc----hhhhcccccccceEEECCcccccccCCC--------CceEEEEEcCC-Cc--EEEEecCCC----CceEEEE
Confidence            6322    3444322212333578999987762211        22355557764 53  367788865    6789999


Q ss_pred             ECcCCcEEEEEeCCCCeeeEEEEeccCCee
Q 008927          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEV  337 (548)
Q Consensus       308 wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~  337 (548)
                      +||+|+.+...+. .|  .|..+|+.+|+.
T Consensus       585 ~Sp~Gr~LaSg~e-d~--~I~iWDl~~~~~  611 (707)
T KOG0263|consen  585 FSPCGRYLASGDE-DG--LIKIWDLANGSL  611 (707)
T ss_pred             EcCCCceEeeccc-CC--cEEEEEcCCCcc
Confidence            9999984444443 44  566777777764

>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]

Probab=95.04  E-value=0.057  Score=54.62  Aligned_cols=62  Identities=21%  Similarity=0.210  Sum_probs=43.6

Q ss_pred             CeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccC---ccChHHHHH-HhcCcEEEEeCCCCCCC
Q 008927          472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG---ILNLSIQYW-TSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       472 G~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~---~~~~~~Q~~-asrGyaVl~~NyRGStG  537 (548)
                      ...++..||.|....    +..+.|+||++|||-+.....   .|+...-.+ ...+-+|+.||||=..-
T Consensus        71 ~~~l~vRly~P~~~~----~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPE  136 (336)
T KOG1515|consen   71 FTNLPVRLYRPTSSS----SETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPE  136 (336)
T ss_pred             CCCeEEEEEcCCCCC----cccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCC
Confidence            345999999997521    226789999999998866543   233222233 56799999999996553

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=94.99  E-value=4.1  Score=41.78  Aligned_cols=166  Identities=11%  Similarity=0.110  Sum_probs=91.1

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeec-CCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (548)
Q Consensus       192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~-~~~~~~p~~SPDGk~La~~~~~~~~~p~  270 (548)
                      .+.+.+|.|-.+.++....+.        ..|.++|+.+++ .+++..... ..-+...+|+|=+..|.-.. .      
T Consensus       229 ~VeDV~~h~~h~~lF~sv~dd--------~~L~iwD~R~~~-~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~-S------  292 (422)
T KOG0264|consen  229 VVEDVAWHPLHEDLFGSVGDD--------GKLMIWDTRSNT-SKPSHSVKAHSAEVNCVAFNPFNEFILATG-S------  292 (422)
T ss_pred             ceehhhccccchhhheeecCC--------CeEEEEEcCCCC-CCCcccccccCCceeEEEeCCCCCceEEec-c------
Confidence            356778888766665543332        478899998531 113333322 22244567888776554233 1      


Q ss_pred             CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCC
Q 008927          271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR  349 (548)
Q Consensus       271 ~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~  349 (548)
                      ....|.+.|+..-.+  ....+.+..    ..+.+..|||+.+ ++..+-. +++.++|-++..+.+. .  +++++.+.
T Consensus       293 ~D~tV~LwDlRnL~~--~lh~~e~H~----dev~~V~WSPh~etvLASSg~-D~rl~vWDls~ig~eq-~--~eda~dgp  362 (422)
T KOG0264|consen  293 ADKTVALWDLRNLNK--PLHTFEGHE----DEVFQVEWSPHNETVLASSGT-DRRLNVWDLSRIGEEQ-S--PEDAEDGP  362 (422)
T ss_pred             CCCcEEEeechhccc--CceeccCCC----cceEEEEeCCCCCceeEeccc-CCcEEEEecccccccc-C--hhhhccCC
Confidence            134688888764221  122333333    5688999999988 7766544 5555555544323221 1  12222222


Q ss_pred             Cc--c-----cccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927          350 PL--W-----VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (548)
Q Consensus       350 p~--w-----~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~  386 (548)
                      |.  +     ....+.|+|.|   ...++++++.+++.-+|+.+
T Consensus       363 pEllF~HgGH~~kV~DfsWnp---~ePW~I~SvaeDN~LqIW~~  403 (422)
T KOG0264|consen  363 PELLFIHGGHTAKVSDFSWNP---NEPWTIASVAEDNILQIWQM  403 (422)
T ss_pred             cceeEEecCcccccccccCCC---CCCeEEEEecCCceEEEeec
Confidence            22  2     22334567765   56677777777777677654

>PRK13614 lipoprotein LpqB; Provisional

Probab=94.89  E-value=3.7  Score=44.78  Aligned_cols=199  Identities=11%  Similarity=0.068  Sum_probs=105.5

Q ss_pred             CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~  243 (548)
                      +++|++++  +  +...++.............+..|+||+.++++..+        ...|+..... +.   .+.+.++.
T Consensus       320 ~G~l~~~~--~--~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~~~~~--------~~~l~~~~~g-~~---~~~~~~g~  383 (573)
T PRK13614        320 DGELVRYE--N--GQISPLPDIQSVAGLGPASPAESPVSQTVAFLNGS--------RTTLYTVSPG-QP---ARALTSGS  383 (573)
T ss_pred             CCeEEEec--C--CCcccCCCccCcCcccccceeecCCCceEEEecCC--------CcEEEEecCC-Cc---ceeeecCC
Confidence            56677664  2  33444432211112234567899999999997322        2467877763 34   56666665


Q ss_pred             CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCcee--eeEEEcCCC-CCcccCCcCceECcCCc-EEEEEe
Q 008927          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY--KRVCVAGFD-PTIVESPTEPKWSSKGE-LFFVTD  319 (548)
Q Consensus       244 ~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~--~~~~l~~~~-~~~~~~~~~~~wspDG~-L~~~sd  319 (548)
                      . ...|.|+++| + +|+..+.     ....|..+.-++.++..  ....+.... .+  ..+..++-|+||- ++++..
T Consensus       384 ~-Lt~PS~d~~g-~-vWtv~~g-----~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g--~~I~~lrvSrDG~R~Avi~~  453 (573)
T PRK13614        384 T-LTRPSFSPQD-W-VWTAGPG-----GNGRIVAYRPTGVAEGAQAPTVTLTADWLAG--RTVKELRVSREGVRALVISE  453 (573)
T ss_pred             C-ccCCcccCCC-C-EEEeeCC-----CCceEEEEecCCCcccccccceeecccccCC--CeeEEEEECCCccEEEEEEE
Confidence            4 6789999999 3 4665321     12255554432222111  011111111 01  3478899999998 888775


Q ss_pred             CCCCeeeEEEEe---ccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEE-eCCeEEEEEEECCCCceEe
Q 008927          320 RKNGFWNLHKWI---ESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHSLSL  395 (548)
Q Consensus       320 ~~~g~~~Ly~~d---~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~-~~g~~~L~~~dl~~g~~~~  395 (548)
                      . .|..+|++.-   -.+|+.+.|+... ....   ........|.    ++..|+.... .++..+.+++.+..|..+.
T Consensus       454 ~-~g~~~V~va~V~R~~~G~P~~L~~~~-~~~~---~~~~~sl~W~----~~~sl~V~~~~~~~~~~~~~v~v~~g~~~~  524 (573)
T PRK13614        454 Q-NGKSRVQVAGIVRNEDGTPRELTAPI-TLAA---DSDADTGAWV----GDSTVVVTKASATSNVVPELLSVDAGQPQQ  524 (573)
T ss_pred             e-CCccEEEEEEEEeCCCCCeEEccCce-eccc---CCCcceeEEc----CCCEEEEEeccCCCcceEEEEEeCCCCccc
Confidence            5 5655555432   2356555665210 0000   0112234565    5667766654 3455667777776665554


Q ss_pred             ec
Q 008927          396 LD  397 (548)
Q Consensus       396 l~  397 (548)
                      +.
T Consensus       525 l~  526 (573)
T PRK13614        525 LA  526 (573)
T ss_pred             CC
Confidence            43

>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]

Probab=94.84  E-value=0.85  Score=49.01  Aligned_cols=35  Identities=14%  Similarity=0.206  Sum_probs=25.3

Q ss_pred             cCCcCceECcCCc-EEEE-EeCCCCeeeEEEEeccCC
Q 008927          301 ESPTEPKWSSKGE-LFFV-TDRKNGFWNLHKWIESNN  335 (548)
Q Consensus       301 ~~~~~~~wspDG~-L~~~-sd~~~g~~~Ly~~d~~~g  335 (548)
                      +.+....|.|||+ ++.. -||...+.+|.+++++..
T Consensus       358 EYI~Ragwtpdgkyvwvq~LdR~Q~~l~iilip~~~f  394 (867)
T KOG2281|consen  358 EYIARAGWTPDGKYVWVQVLDRSQQRLQIILIPPTLF  394 (867)
T ss_pred             eeeeeccccCCCcEEEEEEecCCcceeEEEEECHHHc
Confidence            3456678999999 4443 577677778888877554

>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]

Probab=94.80  E-value=9.4  Score=43.43  Aligned_cols=68  Identities=6%  Similarity=0.097  Sum_probs=42.9

Q ss_pred             CEEEEEEEeCC-eEEEEEEECCCC-ceEeecCCCceeE---eeeecCCEEEEEEecC-CCCCeEEEEEcCCCce
Q 008927          369 NLIACSYRQNG-RSYLGILDDFGH-SLSLLDIPFTDID---NITLGNDCLFVEGASG-VEPSSVAKVTLDDHKL  436 (548)
Q Consensus       369 ~~l~~~~~~~g-~~~L~~~dl~~g-~~~~l~~~~~~~~---~~s~d~~~l~~~~ss~-~~p~~l~~~d~~~~~~  436 (548)
                      ..+++....++ ..++..+....+ ..+.++.+...+.   ..+.+++.++|.+... ..-.+||.+++.+...
T Consensus       353 ~~~~~~~~~~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~~~  426 (755)
T KOG2100|consen  353 SYLKVDSVSDGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGSGTV  426 (755)
T ss_pred             ceeEEEeeccCCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEcccccc
Confidence            34444444455 778888877777 5666776544332   2255677888877654 4456889998876553

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=94.79  E-value=0.37  Score=47.34  Aligned_cols=111  Identities=11%  Similarity=0.186  Sum_probs=68.3

Q ss_pred             eeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceE
Q 008927          196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL  275 (548)
Q Consensus       196 ~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L  275 (548)
                      ..+||+|+.|+...          +.+|++-|..+-+   ..+|..--+-+...-|+.|..++..+....       ..+
T Consensus        14 c~fSp~g~yiAs~~----------~yrlviRd~~tlq---~~qlf~cldki~yieW~ads~~ilC~~yk~-------~~v   73 (447)
T KOG4497|consen   14 CSFSPCGNYIASLS----------RYRLVIRDSETLQ---LHQLFLCLDKIVYIEWKADSCHILCVAYKD-------PKV   73 (447)
T ss_pred             eeECCCCCeeeeee----------eeEEEEeccchhh---HHHHHHHHHHhhheeeeccceeeeeeeecc-------ceE
Confidence            36999999987652          2467777777765   444443334445567999998887766443       246


Q ss_pred             EEEEecCCCceeeeEE-EcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCee
Q 008927          276 WVGYISENGDVYKRVC-VAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV  337 (548)
Q Consensus       276 ~v~~~~~~g~~~~~~~-l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~  337 (548)
                      .+.++.. -+   ..+ +..+.    .......|||||+ |+..++- .  ..|-++.+.+.+.
T Consensus        74 qvwsl~Q-pe---w~ckIdeg~----agls~~~WSPdgrhiL~tseF-~--lriTVWSL~t~~~  126 (447)
T KOG4497|consen   74 QVWSLVQ-PE---WYCKIDEGQ----AGLSSISWSPDGRHILLTSEF-D--LRITVWSLNTQKG  126 (447)
T ss_pred             EEEEeec-ce---eEEEeccCC----CcceeeeECCCcceEeeeecc-e--eEEEEEEecccee
Confidence            6666652 22   222 33322    4567789999998 7776654 2  2344555545443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.77  E-value=2.8  Score=44.44  Aligned_cols=219  Identities=10%  Similarity=0.021  Sum_probs=112.5

Q ss_pred             CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee-c
Q 008927          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-G  242 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~-~  242 (548)
                      ...+|+-+...  ++.+.|....   ...+....|+++|+.|+.-..+         ..+.++|....+.  .+.+.. .
T Consensus       196 g~~vylW~~~s--~~v~~l~~~~---~~~vtSv~ws~~G~~LavG~~~---------g~v~iwD~~~~k~--~~~~~~~h  259 (484)
T KOG0305|consen  196 GQSVYLWSASS--GSVTELCSFG---EELVTSVKWSPDGSHLAVGTSD---------GTVQIWDVKEQKK--TRTLRGSH  259 (484)
T ss_pred             cceEEEEecCC--CceEEeEecC---CCceEEEEECCCCCEEEEeecC---------CeEEEEehhhccc--cccccCCc
Confidence            34678777766  6777777652   2356778899999998775433         3678888877541  333443 3


Q ss_pred             CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCC
Q 008927          243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN  322 (548)
Q Consensus       243 ~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~  322 (548)
                      ...+....|.  +..|.  .-.      ....|...|+......  ...+.+..    ..+..+.|++|++.+..... +
T Consensus       260 ~~rvg~laW~--~~~ls--sGs------r~~~I~~~dvR~~~~~--~~~~~~H~----qeVCgLkws~d~~~lASGgn-D  322 (484)
T KOG0305|consen  260 ASRVGSLAWN--SSVLS--SGS------RDGKILNHDVRISQHV--VSTLQGHR----QEVCGLKWSPDGNQLASGGN-D  322 (484)
T ss_pred             CceeEEEecc--CceEE--Eec------CCCcEEEEEEecchhh--hhhhhccc----ceeeeeEECCCCCeeccCCC-c
Confidence            4445666776  33232  211      1345666666542221  11133322    45788999999974333211 1


Q ss_pred             CeeeEEEEeccCCee-EeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCc
Q 008927          323 GFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT  401 (548)
Q Consensus       323 g~~~Ly~~d~~~g~~-~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~  401 (548)
                        ..++.+|..+.+. ..++...+.+-...|.+            -...|+++..-.....|...|..+|+....-....
T Consensus       323 --N~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP------------~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs  388 (484)
T KOG0305|consen  323 --NVVFIWDGLSPEPKFTFTEHTAAVKALAWCP------------WQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS  388 (484)
T ss_pred             --cceEeccCCCccccEEEeccceeeeEeeeCC------------CccCceEEcCCCcccEEEEEEcCCCcEecccccCC
Confidence              2355666523222 22332222222223332            22334444322234566677776665432222234


Q ss_pred             eeEee--eecCCEEEEEEecCCCCCeEEEE
Q 008927          402 DIDNI--TLGNDCLFVEGASGVEPSSVAKV  429 (548)
Q Consensus       402 ~~~~~--s~d~~~l~~~~ss~~~p~~l~~~  429 (548)
                      .|..+  +...+.++....-....-.||.+
T Consensus       389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~  418 (484)
T KOG0305|consen  389 QVCSLIWSKKYKELLSTHGYSENQITLWKY  418 (484)
T ss_pred             ceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence            56655  56666776655433333345554

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.72  E-value=4.4  Score=39.28  Aligned_cols=227  Identities=9%  Similarity=0.063  Sum_probs=122.9

Q ss_pred             CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc
Q 008927          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (548)
Q Consensus       154 ~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~  233 (548)
                      ++.|.|..+..+.|=++|..+  |+.++..-..   ..+-......|||..-++  +..        .-|.++|.++.+ 
T Consensus        72 dG~VWft~qg~gaiGhLdP~t--Gev~~ypLg~---Ga~Phgiv~gpdg~~Wit--d~~--------~aI~R~dpkt~e-  135 (353)
T COG4257          72 DGAVWFTAQGTGAIGHLDPAT--GEVETYPLGS---GASPHGIVVGPDGSAWIT--DTG--------LAIGRLDPKTLE-  135 (353)
T ss_pred             CCceEEecCccccceecCCCC--CceEEEecCC---CCCCceEEECCCCCeeEe--cCc--------ceeEEecCcccc-
Confidence            346899887777888999988  6666543331   122334567889875333  221        268899988887 


Q ss_pred             cCcEEee----ecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC-CCceeeeEEEcCCCCCcccCCcCceE
Q 008927          234 QEPKVLV----SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       234 ~~~~~L~----~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~-~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                        .++..    ...+....+.|.++|. |-|+....-     ..     .++. .+.   .++... +.+  .......-
T Consensus       136 --vt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~G~-----yG-----rLdPa~~~---i~vfpa-PqG--~gpyGi~a  196 (353)
T COG4257         136 --VTRFPLPLEHADANLETAVFDPWGN-LWFTGQIGA-----YG-----RLDPARNV---ISVFPA-PQG--GGPYGICA  196 (353)
T ss_pred             --eEEeecccccCCCcccceeeCCCcc-EEEeecccc-----ce-----ecCcccCc---eeeecc-CCC--CCCcceEE
Confidence              55442    2233456788999987 555552210     01     1111 010   111111 101  22344566


Q ss_pred             CcCCcEEEEEeCCCCeeeEEEEeccCCeeEeeccccc--ccCCCcccccCcceeeeeecCCC-CEEEEEEEeCCeEEEEE
Q 008927          309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA--EFSRPLWVFGINSYEIIQSHGEK-NLIACSYRQNGRSYLGI  385 (548)
Q Consensus       309 spDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~--d~~~p~w~~~~~~~~~~~~~~d~-~~l~~~~~~~g~~~L~~  385 (548)
                      .|||+++|.+=.  | ..|-++|..++-.+.+...+.  .-..-.|+             |. +++. .. .-+..+|++
T Consensus       197 tpdGsvwyasla--g-naiaridp~~~~aev~p~P~~~~~gsRriws-------------dpig~~w-it-twg~g~l~r  258 (353)
T COG4257         197 TPDGSVWYASLA--G-NAIARIDPFAGHAEVVPQPNALKAGSRRIWS-------------DPIGRAW-IT-TWGTGSLHR  258 (353)
T ss_pred             CCCCcEEEEecc--c-cceEEcccccCCcceecCCCccccccccccc-------------CccCcEE-Ee-ccCCceeeE
Confidence            899998888643  1 257788887775554432111  11111232             22 2333 33 346678999


Q ss_pred             EECCCCceEeecCCCce--eEeeeecC-CEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          386 LDDFGHSLSLLDIPFTD--IDNITLGN-DCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       386 ~dl~~g~~~~l~~~~~~--~~~~s~d~-~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      +|+....++...+|...  -..+..|. +++++.-   -....|.++|.++...
T Consensus       259 fdPs~~sW~eypLPgs~arpys~rVD~~grVW~se---a~agai~rfdpeta~f  309 (353)
T COG4257         259 FDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSE---ADAGAIGRFDPETARF  309 (353)
T ss_pred             eCcccccceeeeCCCCCCCcceeeeccCCcEEeec---cccCceeecCcccceE
Confidence            99988877765555332  22333454 4444322   2345788888776654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=94.72  E-value=8.2  Score=42.36  Aligned_cols=154  Identities=12%  Similarity=-0.006  Sum_probs=77.9

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      .|.|-+..| .+..+.|.|-++++..  ... ..+...    ...+.+.+.+||++..+..+.|+--   .....-+..+
T Consensus       419 ~Fvpgd~~I-v~G~k~Gel~vfdlaS--~~l~Eti~AH----dgaIWsi~~~pD~~g~vT~saDktV---kfWdf~l~~~  488 (888)
T KOG0306|consen  419 KFVPGDRYI-VLGTKNGELQVFDLAS--ASLVETIRAH----DGAIWSISLSPDNKGFVTGSADKTV---KFWDFKLVVS  488 (888)
T ss_pred             EecCCCceE-EEeccCCceEEEEeeh--hhhhhhhhcc----ccceeeeeecCCCCceEEecCCcEE---EEEeEEEEec
Confidence            344444444 3444567677777765  322 222222    2345677899999987766544310   0011112223


Q ss_pred             CCCCCccCcE-------EeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927          228 LNGQNIQEPK-------VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (548)
Q Consensus       228 l~~g~~~~~~-------~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~  300 (548)
                       ..|..  .+       +..+-.+-+....+||||+.||..-.+.      .-.+|.+|  + =+  -...+-|..    
T Consensus       489 -~~gt~--~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn------TVkVyflD--t-lK--FflsLYGHk----  550 (888)
T KOG0306|consen  489 -VPGTQ--KKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN------TVKVYFLD--T-LK--FFLSLYGHK----  550 (888)
T ss_pred             -cCccc--ceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC------eEEEEEec--c-ee--eeeeecccc----
Confidence             23320  12       1122234456678999999998443221      23455444  2 11  234455544    


Q ss_pred             cCCcCceECcCCcEEEEEeCCCCeeeEEEEe
Q 008927          301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWI  331 (548)
Q Consensus       301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d  331 (548)
                      ..+....-|||+++++.... +-.-.+|-+|
T Consensus       551 LPV~smDIS~DSklivTgSA-DKnVKiWGLd  580 (888)
T KOG0306|consen  551 LPVLSMDISPDSKLIVTGSA-DKNVKIWGLD  580 (888)
T ss_pred             cceeEEeccCCcCeEEeccC-CCceEEeccc
Confidence            55667788999997766432 2223444444

>PLN00181 protein SPA1-RELATED; Provisional

Probab=94.65  E-value=11  Score=43.42  Aligned_cols=152  Identities=10%  Similarity=0.022  Sum_probs=80.0

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceee-CCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIF-DPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~-SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      .|.+.++.++++...++.|.+.++..  +.. ..+...     .......| +++|..|+....+         ..|+.+
T Consensus       582 ~~~p~~~~~L~Sgs~Dg~v~iWd~~~--~~~~~~~~~~-----~~v~~v~~~~~~g~~latgs~d---------g~I~iw  645 (793)
T PLN00181        582 DYSSADPTLLASGSDDGSVKLWSINQ--GVSIGTIKTK-----ANICCVQFPSESGRSLAFGSAD---------HKVYYY  645 (793)
T ss_pred             EEcCCCCCEEEEEcCCCEEEEEECCC--CcEEEEEecC-----CCeEEEEEeCCCCCEEEEEeCC---------CeEEEE
Confidence            45554455666666677777778765  332 223221     12334456 4578877665433         468889


Q ss_pred             ECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCC---ceeeeEEEcCCCCCcccCC
Q 008927          227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG---DVYKRVCVAGFDPTIVESP  303 (548)
Q Consensus       227 dl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g---~~~~~~~l~~~~~~~~~~~  303 (548)
                      |+.++.. ....+......+....|+ |+..|+-.+.        ...|.+.|+....   .......+.+..    ..+
T Consensus       646 D~~~~~~-~~~~~~~h~~~V~~v~f~-~~~~lvs~s~--------D~~ikiWd~~~~~~~~~~~~l~~~~gh~----~~i  711 (793)
T PLN00181        646 DLRNPKL-PLCTMIGHSKTVSYVRFV-DSSTLVSSST--------DNTLKLWDLSMSISGINETPLHSFMGHT----NVK  711 (793)
T ss_pred             ECCCCCc-cceEecCCCCCEEEEEEe-CCCEEEEEEC--------CCEEEEEeCCCCccccCCcceEEEcCCC----CCe
Confidence            9877541 012233233345566776 6777653331        2357777765210   001123344432    345


Q ss_pred             cCceECcCCcEEEEEeCCCCeeeEEEEecc
Q 008927          304 TEPKWSSKGELFFVTDRKNGFWNLHKWIES  333 (548)
Q Consensus       304 ~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~  333 (548)
                      ....|+|+|++++.... ++  .++.++..
T Consensus       712 ~~v~~s~~~~~lasgs~-D~--~v~iw~~~  738 (793)
T PLN00181        712 NFVGLSVSDGYIATGSE-TN--EVFVYHKA  738 (793)
T ss_pred             eEEEEcCCCCEEEEEeC-CC--EEEEEECC
Confidence            56789999985444433 44  34455543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=94.41  E-value=1.2  Score=43.54  Aligned_cols=179  Identities=11%  Similarity=0.187  Sum_probs=93.3

Q ss_pred             EEEEEECCCCCccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927          222 EIVAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (548)
Q Consensus       222 ~l~~idl~~g~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~  300 (548)
                      .|-++-+.+|..  .++... ....+...+||.|+.+|.-.+.+        ..+.+--+.+ |+.  ....-+..    
T Consensus       286 kIKvWri~tG~C--lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD--------~tvRiHGlKS-GK~--LKEfrGHs----  348 (508)
T KOG0275|consen  286 KIKVWRIETGQC--LRRFDRAHTKGVTCLSFSRDNSQILSASFD--------QTVRIHGLKS-GKC--LKEFRGHS----  348 (508)
T ss_pred             cEEEEEEecchH--HHHhhhhhccCeeEEEEccCcchhhccccc--------ceEEEecccc-chh--HHHhcCcc----
Confidence            344445566652  333321 12235667899999988633211        2355555653 431  11122322    


Q ss_pred             cCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeec-ccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC
Q 008927          301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (548)
Q Consensus       301 ~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~-~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~  378 (548)
                      ..+....|++||. ++-.+ . +|.-.+  ++..+++-..-. +...|+       ...+..++|.  ....++ ..+  
T Consensus       349 Syvn~a~ft~dG~~iisaS-s-Dgtvkv--W~~KtteC~~Tfk~~~~d~-------~vnsv~~~PK--npeh~i-VCN--  412 (508)
T KOG0275|consen  349 SYVNEATFTDDGHHIISAS-S-DGTVKV--WHGKTTECLSTFKPLGTDY-------PVNSVILLPK--NPEHFI-VCN--  412 (508)
T ss_pred             ccccceEEcCCCCeEEEec-C-CccEEE--ecCcchhhhhhccCCCCcc-------cceeEEEcCC--CCceEE-EEc--
Confidence            3467889999998 44333 2 454444  444444321111 111111       1122334441  122332 222  


Q ss_pred             CeEEEEEEECCCCceEeecCC---Cce-eEe-eeecCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 008927          379 GRSYLGILDDFGHSLSLLDIP---FTD-IDN-ITLGNDCLFVEGASGVEPSSVAKVTLDDHKLK  437 (548)
Q Consensus       379 g~~~L~~~dl~~g~~~~l~~~---~~~-~~~-~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~  437 (548)
                      ....+|++++.+.-++..+.+   .++ +.. +++.|.++|.++..    ..+|-+...+|+++
T Consensus       413 rsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED----~vlYCF~~~sG~LE  472 (508)
T KOG0275|consen  413 RSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED----GVLYCFSVLSGKLE  472 (508)
T ss_pred             CCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccC----cEEEEEEeecCcee
Confidence            234688899876666766653   233 333 38999999998764    57888877777764

>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.39  E-value=0.05  Score=52.94  Aligned_cols=67  Identities=21%  Similarity=0.162  Sum_probs=43.5

Q ss_pred             EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccC-ccChHHHHHHhcCcEEEEeCCCCCCCCChh
Q 008927          463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNYGGSTGLSSV  541 (548)
Q Consensus       463 ~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~-~~~~~~Q~~asrGyaVl~~NyRGStGyG~~  541 (548)
                      ..+|.+  +|..-+.+||.|..  .    .+..||||+.||+=...... ..+-+.......||+|++|     .||.+.
T Consensus        37 ~~s~~~--~g~~r~y~l~vP~g--~----~~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yP-----dg~~~~  103 (312)
T COG3509          37 VASFDV--NGLKRSYRLYVPPG--L----PSGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYP-----DGYDRA  103 (312)
T ss_pred             cccccc--CCCccceEEEcCCC--C----CCCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECc-----Cccccc
Confidence            334444  67788999999954  3    23459999999985543221 1222233445679999999     566665


Q ss_pred             h
Q 008927          542 P  542 (548)
Q Consensus       542 f  542 (548)
                      |
T Consensus       104 w  104 (312)
T COG3509         104 W  104 (312)
T ss_pred             c
Confidence            5

>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.38  E-value=0.1  Score=50.33  Aligned_cols=67  Identities=13%  Similarity=0.117  Sum_probs=46.9

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLS  539 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG  539 (548)
                      +.+++++. | .++.|++.+|++       ...+|.||.+|+=..-.  +...-....||++||.|+.||.=+..|-.
T Consensus         3 ~~v~~~~~-~-~~~~~~~a~P~~-------~~~~P~VIv~hei~Gl~--~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~   69 (236)
T COG0412           3 TDVTIPAP-D-GELPAYLARPAG-------AGGFPGVIVLHEIFGLN--PHIRDVARRLAKAGYVVLAPDLYGRQGDP   69 (236)
T ss_pred             cceEeeCC-C-ceEeEEEecCCc-------CCCCCEEEEEecccCCc--hHHHHHHHHHHhCCcEEEechhhccCCCC
Confidence            45778885 5 889999999975       22349999999832111  01223456899999999999987654433

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.36  E-value=0.65  Score=52.28  Aligned_cols=160  Identities=14%  Similarity=0.122  Sum_probs=79.0

Q ss_pred             eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEE------ec--CCCc-----eeeeEEEcCCCCCcccCCcCceECcCC
Q 008927          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGY------IS--ENGD-----VYKRVCVAGFDPTIVESPTEPKWSSKG  312 (548)
Q Consensus       246 ~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~------~~--~~g~-----~~~~~~l~~~~~~~~~~~~~~~wspDG  312 (548)
                      ..-.+|||||++||.-+ ++.     .-.+|-..      +-  ++|.     ++....+-+.+    ..+....|+||+
T Consensus        72 v~CVR~S~dG~~lAsGS-DD~-----~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~----~DV~Dv~Wsp~~  141 (942)
T KOG0973|consen   72 VNCVRFSPDGSYLASGS-DDR-----LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD----SDVLDVNWSPDD  141 (942)
T ss_pred             eeEEEECCCCCeEeecc-Ccc-----eEEEeeecccCCcccccccccccccceeeEEEEEecCC----CccceeccCCCc
Confidence            45568999999999544 221     11223222      10  0111     22233444544    558889999999


Q ss_pred             cEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCc
Q 008927          313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS  392 (548)
Q Consensus       313 ~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~  392 (548)
                      .++..... ++  .+..++..+.+...+...     ....+-   ...|.|   -|++|. +...|..-.+|+.+ +.|-
T Consensus       142 ~~lvS~s~-Dn--sViiwn~~tF~~~~vl~~-----H~s~VK---Gvs~DP---~Gky~A-SqsdDrtikvwrt~-dw~i  205 (942)
T KOG0973|consen  142 SLLVSVSL-DN--SVIIWNAKTFELLKVLRG-----HQSLVK---GVSWDP---IGKYFA-SQSDDRTLKVWRTS-DWGI  205 (942)
T ss_pred             cEEEEecc-cc--eEEEEccccceeeeeeec-----cccccc---ceEECC---ccCeee-eecCCceEEEEEcc-ccee
Confidence            85444322 22  455666555543222211     111111   133443   455443 33344444555533 3455


Q ss_pred             eEeecCCCce------eEee--eecCCEEEEEEecCCCCCeEEEEEc
Q 008927          393 LSLLDIPFTD------IDNI--TLGNDCLFVEGASGVEPSSVAKVTL  431 (548)
Q Consensus       393 ~~~l~~~~~~------~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~  431 (548)
                      .+.++.||..      +.-+  +|||++|+...+-...-+.+-+++.
T Consensus       206 ~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR  252 (942)
T KOG0973|consen  206 EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER  252 (942)
T ss_pred             eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence            6667766642      2222  7899987655543332344445554

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=94.34  E-value=4.2  Score=42.94  Aligned_cols=164  Identities=14%  Similarity=0.103  Sum_probs=84.9

Q ss_pred             eeeEEECCEEEEEeCCCC----eEEEEeCCCCCCCceecCCCCCCCCceecc--eeeCCCCCEEEEEEeccCCCC-CC--
Q 008927          148 GAFRIFGDTVIFSNYKDQ----RLYKHSIDSKDSSPLPITPDYGEPLVSYAD--GIFDPRFNRYVTVREDRRQDA-LN--  218 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~~~----~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~--~~~SpDG~~i~~v~~~~~~~~-~~--  218 (548)
                      .+|+|.+..|+|=.....    ++-++.+..  +.  .|-..   .-..+++  +.|-..|++|.+-.+++.... ..  
T Consensus       352 FswsP~~~llAYwtpe~~~~parvtL~evPs--~~--~iRt~---nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f  424 (698)
T KOG2314|consen  352 FSWSPTSNLLAYWTPETNNIPARVTLMEVPS--KR--EIRTK---NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQF  424 (698)
T ss_pred             cccCCCcceEEEEcccccCCcceEEEEecCc--cc--eeeec---cceeeeccEEEeccCCcEEEEEEEeeccccccceE
Confidence            367777777666543321    344444433  11  12111   0123343  458889998766445442211 11  


Q ss_pred             ceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC-CCceeeeEEEcCCCC
Q 008927          219 STTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDP  297 (548)
Q Consensus       219 ~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~-~g~~~~~~~l~~~~~  297 (548)
                      ..-+|+.|+-..=.   .. ..+-.+.+.++.|-|.|.+.+.++-+..     ...+-++.++. .++   ..++..-+ 
T Consensus       425 ~n~eIfrireKdIp---ve-~velke~vi~FaWEP~gdkF~vi~g~~~-----k~tvsfY~~e~~~~~---~~lVk~~d-  491 (698)
T KOG2314|consen  425 SNLEIFRIREKDIP---VE-VVELKESVIAFAWEPHGDKFAVISGNTV-----KNTVSFYAVETNIKK---PSLVKELD-  491 (698)
T ss_pred             eeEEEEEeeccCCC---ce-eeecchheeeeeeccCCCeEEEEEcccc-----ccceeEEEeecCCCc---hhhhhhhc-
Confidence            12356665532211   22 2233344567799999999998874432     33444444442 222   23332222 


Q ss_pred             CcccCCcCceECcCCcEEEEEeCCCCeeeEEEEecc
Q 008927          298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES  333 (548)
Q Consensus       298 ~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~  333 (548)
                      .  .......|||.|+++++....+-..+|+.+|.+
T Consensus       492 k--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  492 K--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD  525 (698)
T ss_pred             c--cccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence            1  456778999999954444332334578888864

>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases

Probab=94.27  E-value=0.051  Score=59.11  Aligned_cols=55  Identities=29%  Similarity=0.360  Sum_probs=33.5

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCc--cChHHHHHHhcCcEEEEeCCC
Q 008927          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI--LNLSIQYWTSRGWAFVDVNYG  533 (548)
Q Consensus       475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~--~~~~~Q~~asrGyaVl~~NyR  533 (548)
                      ++--+|.|++..    .+.++|++|+||||=...-...  ......+++.++.+|+.+|||
T Consensus       109 L~LnI~~P~~~~----~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYR  165 (535)
T PF00135_consen  109 LYLNIYTPSNAS----SNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYR  165 (535)
T ss_dssp             -EEEEEEETSSS----STTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE---
T ss_pred             HHHhhhhccccc----cccccceEEEeecccccCCCcccccccccccccCCCEEEEEeccc
Confidence            677788897532    2337999999999955443321  122345678999999999999

Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=94.24  E-value=6.1  Score=38.91  Aligned_cols=97  Identities=8%  Similarity=0.013  Sum_probs=59.5

Q ss_pred             ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCce
Q 008927          195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE  274 (548)
Q Consensus       195 ~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~  274 (548)
                      -..|++-|..|+.-+.+         ..|+.+|..|-..  .+.|...-.-+....||+||+.|+-.+.        ...
T Consensus        28 ~~~Fs~~G~~lAvGc~n---------G~vvI~D~~T~~i--ar~lsaH~~pi~sl~WS~dgr~LltsS~--------D~s   88 (405)
T KOG1273|consen   28 CCQFSRWGDYLAVGCAN---------GRVVIYDFDTFRI--ARMLSAHVRPITSLCWSRDGRKLLTSSR--------DWS   88 (405)
T ss_pred             eEEeccCcceeeeeccC---------CcEEEEEccccch--hhhhhccccceeEEEecCCCCEeeeecC--------Cce
Confidence            45799999988776544         3688899988762  3444443334677899999998873331        124


Q ss_pred             EEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEE
Q 008927          275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT  318 (548)
Q Consensus       275 L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~s  318 (548)
                      +-+.|+-. |... .+....      ..+....|.|-.+ .++++
T Consensus        89 i~lwDl~~-gs~l-~rirf~------spv~~~q~hp~k~n~~va~  125 (405)
T KOG1273|consen   89 IKLWDLLK-GSPL-KRIRFD------SPVWGAQWHPRKRNKCVAT  125 (405)
T ss_pred             eEEEeccC-CCce-eEEEcc------CccceeeeccccCCeEEEE
Confidence            66668774 5421 122222      2355667887655 44443

>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway

Probab=94.22  E-value=0.058  Score=51.23  Aligned_cols=54  Identities=17%  Similarity=0.147  Sum_probs=35.3

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG  537 (548)
                      |.+|++.|.+       +++.|.||.+|+-..-.  +........||++||.|+.||+-+..+
T Consensus         1 ~~ay~~~P~~-------~~~~~~Vvv~~d~~G~~--~~~~~~ad~lA~~Gy~v~~pD~f~~~~   54 (218)
T PF01738_consen    1 IDAYVARPEG-------GGPRPAVVVIHDIFGLN--PNIRDLADRLAEEGYVVLAPDLFGGRG   54 (218)
T ss_dssp             EEEEEEEETT-------SSSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS
T ss_pred             CeEEEEeCCC-------CCCCCEEEEEcCCCCCc--hHHHHHHHHHHhcCCCEEecccccCCC
Confidence            5789999964       24679999999853111  111124567899999999999866665

Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.

>PRK13613 lipoprotein LpqB; Provisional

Probab=94.09  E-value=9.1  Score=42.19  Aligned_cols=201  Identities=13%  Similarity=0.203  Sum_probs=102.9

Q ss_pred             CCeEEEEeCCCC--CCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc-c-CcEEe
Q 008927          164 DQRLYKHSIDSK--DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-Q-EPKVL  239 (548)
Q Consensus       164 ~~~Ly~~~~~~~--~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~-~-~~~~L  239 (548)
                      +++++.+..++.  ++..+++.............+..|+||+.++++..+        ...|++-++..+.. + ..+.+
T Consensus       334 ~G~~~~~~~~~~~~~~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~v~~~--------~~~l~vg~~~~~~~~~~~~~~~  405 (599)
T PRK13613        334 DGQLWLLRISGTSNGTDPEPVPGALGSGRVPLRRVAVSRDESRAAGISAD--------GDSVYVGSLTPGASIGVHSWGV  405 (599)
T ss_pred             CCceEEEeccccccCCCcccCCCccCCCCCCccceEEcCCCceEEEEcCC--------CcEEEEeccCCCCcccccccee
Confidence            456777765430  023344433211012245577899999999998432        13677766654430 0 01223


Q ss_pred             eecCCceeeeEECCCCCEEEEEEecCCCCCCCCce-EEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEE
Q 008927          240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE-LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFV  317 (548)
Q Consensus       240 ~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~-L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~  317 (548)
                      .++. ....|.|+++| . +|+.....    ...+ |.+..-  +|+..+... .... +  ..+..++-|+||- ++++
T Consensus       406 ~~~~-~Lt~PS~d~~g-~-vWtvd~~~----~~~~vl~v~~~--~G~~~~V~~-~~l~-g--~~I~~lrvSrDG~RvAvv  472 (599)
T PRK13613        406 TADG-RLTSPSWDGRG-D-LWVVDRDP----ADPRLLWLLQG--DGEPVEVRT-PELD-G--HRVVAVRVARDGVRVALI  472 (599)
T ss_pred             eccC-cccCCcCcCCC-C-EEEecCCC----CCceEEEEEcC--CCcEEEeec-cccC-C--CEeEEEEECCCccEEEEE
Confidence            4343 36789999998 3 46652111    1233 444442  454322111 1111 1  3588899999998 8888


Q ss_pred             EeCCCCeeeEEEE--ec-cCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEE-eCCeEEEEEEECCCCce
Q 008927          318 TDRKNGFWNLHKW--IE-SNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHSL  393 (548)
Q Consensus       318 sd~~~g~~~Ly~~--d~-~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~-~~g~~~L~~~dl~~g~~  393 (548)
                      .+. .|..+|++-  -. ++|+ ..|+... ... +. ........|.    ++..|+.... .++...++++++++...
T Consensus       473 ~~~-~g~~~v~va~V~R~~~G~-~~l~~~~-~l~-~~-l~~v~~~~W~----~~~sL~Vlg~~~~~~~~v~~v~vdG~~~  543 (599)
T PRK13613        473 VEK-DGRRSLQIGRIVRDAKAV-VSVEEFR-SLA-PE-LEDVTDMSWA----GDSQLVVLGREEGGVQQARYVQVDGSTP  543 (599)
T ss_pred             Eec-CCCcEEEEEEEEeCCCCc-EEeeccE-Eec-cC-CCccceeEEc----CCCEEEEEeccCCCCcceEEEecCCcCc
Confidence            775 444455433  22 2344 3443110 000 00 0012234565    5667766443 44577889998875544


Q ss_pred             E
Q 008927          394 S  394 (548)
Q Consensus       394 ~  394 (548)
                      .
T Consensus       544 ~  544 (599)
T PRK13613        544 P  544 (599)
T ss_pred             c
Confidence            3

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=94.09  E-value=8.6  Score=40.05  Aligned_cols=183  Identities=9%  Similarity=0.056  Sum_probs=86.7

Q ss_pred             eEEEEEECCCCCccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCc
Q 008927          221 TEIVAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI  299 (548)
Q Consensus       221 ~~l~~idl~~g~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~  299 (548)
                      ..|+.+|.++|+   ..--.. .....+.|.+. |+ +|+ +..       ....|+.+|.++ |++ ..+.-.... ..
T Consensus       130 g~l~ald~~tG~---~~W~~~~~~~~~ssP~v~-~~-~v~-v~~-------~~g~l~ald~~t-G~~-~W~~~~~~~-~~  193 (394)
T PRK11138        130 GQVYALNAEDGE---VAWQTKVAGEALSRPVVS-DG-LVL-VHT-------SNGMLQALNESD-GAV-KWTVNLDVP-SL  193 (394)
T ss_pred             CEEEEEECCCCC---CcccccCCCceecCCEEE-CC-EEE-EEC-------CCCEEEEEEccC-CCE-eeeecCCCC-cc
Confidence            479999999997   332222 12234556665 33 343 331       135799999884 652 111111110 00


Q ss_pred             -ccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcc-cccCcceeeeeecCCCCEEEEEEEe
Q 008927          300 -VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW-VFGINSYEIIQSHGEKNLIACSYRQ  377 (548)
Q Consensus       300 -~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w-~~~~~~~~~~~~~~d~~~l~~~~~~  377 (548)
                       ......|.-. +|.+++...  +  ..|+.+++++|+..--.+.....+.... ........+.-   .++.+|+.. .
T Consensus       194 ~~~~~~sP~v~-~~~v~~~~~--~--g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v---~~~~vy~~~-~  264 (394)
T PRK11138        194 TLRGESAPATA-FGGAIVGGD--N--GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV---VGGVVYALA-Y  264 (394)
T ss_pred             cccCCCCCEEE-CCEEEEEcC--C--CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE---ECCEEEEEE-c
Confidence             0012334432 344444332  2  3588888888875321110000000000 00000001111   356666544 2


Q ss_pred             CCeEEEEEEECCCCceEeecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          378 NGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       378 ~g~~~L~~~dl~~g~~~~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      +  ..|+.+|+.+|+..-- .+......+..+++.+|+...    ...|+.+|+++|+
T Consensus       265 ~--g~l~ald~~tG~~~W~-~~~~~~~~~~~~~~~vy~~~~----~g~l~ald~~tG~  315 (394)
T PRK11138        265 N--GNLVALDLRSGQIVWK-REYGSVNDFAVDGGRIYLVDQ----NDRVYALDTRGGV  315 (394)
T ss_pred             C--CeEEEEECCCCCEEEe-ecCCCccCcEEECCEEEEEcC----CCeEEEEECCCCc
Confidence            3  4689999999975321 111111123456777777643    3689999998886

>PRK02888 nitrous-oxide reductase; Validated

Probab=93.98  E-value=11  Score=41.10  Aligned_cols=93  Identities=14%  Similarity=0.009  Sum_probs=49.1

Q ss_pred             EEEEEeCC-CCeEEEEeCCCCCCCceecCCCCCC-------------CCc-----eecceeeCCCCCEEEEEEeccCCCC
Q 008927          156 TVIFSNYK-DQRLYKHSIDSKDSSPLPITPDYGE-------------PLV-----SYADGIFDPRFNRYVTVREDRRQDA  216 (548)
Q Consensus       156 ~i~F~~~~-~~~Ly~~~~~~~~~~~~~lT~~~~~-------------~~~-----~~~~~~~SpDG~~i~~v~~~~~~~~  216 (548)
                      +-+|++++ +.+|-|++++.  =+..+|+.-+..             ..+     ++.-| ++|||+.+.-.        
T Consensus       142 r~~findk~n~Rvari~l~~--~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~P-lpnDGk~l~~~--------  210 (635)
T PRK02888        142 RYLFINDKANTRVARIRLDV--MKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIP-LPNDGKDLDDP--------  210 (635)
T ss_pred             eEEEEecCCCcceEEEECcc--EeeceeEeCCCccCccccCccccCCccEEEeCcccccc-cCCCCCEeecc--------
Confidence            56677765 56899988864  333344332100             000     11111 45666644211        


Q ss_pred             CCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEE
Q 008927          217 LNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE  262 (548)
Q Consensus       217 ~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~  262 (548)
                      .+.++-+-.||.++-+. ..+++..+  ......++|||++++..+
T Consensus       211 ~ey~~~vSvID~etmeV-~~qV~Vdg--npd~v~~spdGk~afvTs  253 (635)
T PRK02888        211 KKYRSLFTAVDAETMEV-AWQVMVDG--NLDNVDTDYDGKYAFSTC  253 (635)
T ss_pred             cceeEEEEEEECccceE-EEEEEeCC--CcccceECCCCCEEEEec
Confidence            23467788899887651 01222322  223457899999876554

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=93.88  E-value=6.9  Score=39.68  Aligned_cols=153  Identities=14%  Similarity=0.128  Sum_probs=88.5

Q ss_pred             eeEEECCEEEEEeCCCC--eEEEEeCCCCCCCceecCCCC---CCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 008927          149 AFRIFGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~--~Ly~~~~~~~~~~~~~lT~~~---~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l  223 (548)
                      .|+|.++.++-+-.+|.  .||.++-.   +-.+.||.-.   .+..-+..-..|.|-..-|++.+.-        .+.+
T Consensus        88 ~w~PfnD~vIASgSeD~~v~vW~IPe~---~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~--------Dn~v  156 (472)
T KOG0303|consen   88 DWCPFNDCVIASGSEDTKVMVWQIPEN---GLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS--------DNTV  156 (472)
T ss_pred             ccCccCCceeecCCCCceEEEEECCCc---ccccCcccceEEEeecceeEEEEeecccchhhHhhccC--------CceE
Confidence            68898887666544444  67777644   3333343210   0012356666788876666554321        2578


Q ss_pred             EEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCce-eeeEEEcCCCCCcccC
Q 008927          224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVES  302 (548)
Q Consensus       224 ~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~-~~~~~l~~~~~~~~~~  302 (548)
                      ..+|+.+|+   .-+-...++.+.+..|+-||.+|+-...        ...|.+.|... |++ .+.....+      ..
T Consensus       157 ~iWnv~tge---ali~l~hpd~i~S~sfn~dGs~l~Ttck--------DKkvRv~dpr~-~~~v~e~~~heG------~k  218 (472)
T KOG0303|consen  157 SIWNVGTGE---ALITLDHPDMVYSMSFNRDGSLLCTTCK--------DKKVRVIDPRR-GTVVSEGVAHEG------AK  218 (472)
T ss_pred             EEEeccCCc---eeeecCCCCeEEEEEeccCCceeeeecc--------cceeEEEcCCC-CcEeeecccccC------CC
Confidence            999999997   3322336777777899999999885542        34688888774 542 11111111      33


Q ss_pred             CcCceECcCCcEEEEE--eCCCCeeeEEEEec
Q 008927          303 PTEPKWSSKGELFFVT--DRKNGFWNLHKWIE  332 (548)
Q Consensus       303 ~~~~~wspDG~L~~~s--d~~~g~~~Ly~~d~  332 (548)
                      .....|..||+ ++.+  .+ ....++-++|+
T Consensus       219 ~~Raifl~~g~-i~tTGfsr-~seRq~aLwdp  248 (472)
T KOG0303|consen  219 PARAIFLASGK-IFTTGFSR-MSERQIALWDP  248 (472)
T ss_pred             cceeEEeccCc-eeeecccc-ccccceeccCc
Confidence            45678988887 3332  12 22334555554

>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []

Probab=93.80  E-value=0.064  Score=55.32  Aligned_cols=64  Identities=30%  Similarity=0.447  Sum_probs=42.0

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCC
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      .+.|.++-  +|.+|.|+|..|..       ++++|+||. -||--+--.+-+.....+|+.||+++|.++.=|
T Consensus       165 i~~v~iP~--eg~~I~g~LhlP~~-------~~p~P~VIv-~gGlDs~qeD~~~l~~~~l~~rGiA~LtvDmPG  228 (411)
T PF06500_consen  165 IEEVEIPF--EGKTIPGYLHLPSG-------EKPYPTVIV-CGGLDSLQEDLYRLFRDYLAPRGIAMLTVDMPG  228 (411)
T ss_dssp             EEEEEEEE--TTCEEEEEEEESSS-------SS-EEEEEE-E--TTS-GGGGHHHHHCCCHHCT-EEEEE--TT
T ss_pred             cEEEEEee--CCcEEEEEEEcCCC-------CCCCCEEEE-eCCcchhHHHHHHHHHHHHHhCCCEEEEEccCC
Confidence            47788887  46899999999963       567897766 566554444434445567899999999999865

This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.

>PRK00870 haloalkane dehalogenase; Provisional

Probab=93.79  E-value=0.2  Score=50.05  Aligned_cols=65  Identities=17%  Similarity=0.274  Sum_probs=41.2

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ....++.... ||..+.-. |...+.      . .-|.||++||.|....  .|...+..|+++||.|+.+|.||-
T Consensus        20 ~~~~~~~~~~-~~~~~~i~-y~~~G~------~-~~~~lvliHG~~~~~~--~w~~~~~~L~~~gy~vi~~Dl~G~   84 (302)
T PRK00870         20 APHYVDVDDG-DGGPLRMH-YVDEGP------A-DGPPVLLLHGEPSWSY--LYRKMIPILAAAGHRVIAPDLIGF   84 (302)
T ss_pred             CceeEeecCC-CCceEEEE-EEecCC------C-CCCEEEEECCCCCchh--hHHHHHHHHHhCCCEEEEECCCCC
Confidence            3455666654 56543322 333220      1 2367899999875433  456666778888999999999973

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=93.73  E-value=4.6  Score=39.79  Aligned_cols=152  Identities=11%  Similarity=0.101  Sum_probs=86.5

Q ss_pred             eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCC--CCCceecceeeCCC--CCEEEEEEeccCCCCCCceeEEEE
Q 008927          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG--EPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~--~~~~~~~~~~~SpD--G~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      ...+.++|+-..  .+.||++....   .++++-....  ++. .  -.+..|.  -..|+|        |+....+|-+
T Consensus       100 V~l~r~riVvvl--~~~I~VytF~~---n~k~l~~~et~~NPk-G--lC~~~~~~~k~~Laf--------Pg~k~GqvQi  163 (346)
T KOG2111|consen  100 VKLRRDRIVVVL--ENKIYVYTFPD---NPKLLHVIETRSNPK-G--LCSLCPTSNKSLLAF--------PGFKTGQVQI  163 (346)
T ss_pred             EEEcCCeEEEEe--cCeEEEEEcCC---ChhheeeeecccCCC-c--eEeecCCCCceEEEc--------CCCccceEEE
Confidence            344567777776  66788888763   4555533210  000 1  1123332  122233        1223468888


Q ss_pred             EECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcC
Q 008927          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (548)
Q Consensus       226 idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~  305 (548)
                      +|+......++..+.....-.+-.+++-+|..||=.+ .      .++=|.+.|-..++.+.|.+.  |.+ .  ..+..
T Consensus       164 ~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS-t------kGTLIRIFdt~~g~~l~E~RR--G~d-~--A~iy~  231 (346)
T KOG2111|consen  164 VDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS-T------KGTLIRIFDTEDGTLLQELRR--GVD-R--ADIYC  231 (346)
T ss_pred             EEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec-c------CcEEEEEEEcCCCcEeeeeec--CCc-h--heEEE
Confidence            8998765111244443333466778999999998333 2      257788888874333333222  111 2  45678


Q ss_pred             ceECcCCc-EEEEEeCCCCeeeEEEEe
Q 008927          306 PKWSSKGE-LFFVTDRKNGFWNLHKWI  331 (548)
Q Consensus       306 ~~wspDG~-L~~~sd~~~g~~~Ly~~d  331 (548)
                      ..||||+. |++.+|+  |.-+||.+.
T Consensus       232 iaFSp~~s~LavsSdK--gTlHiF~l~  256 (346)
T KOG2111|consen  232 IAFSPNSSWLAVSSDK--GTLHIFSLR  256 (346)
T ss_pred             EEeCCCccEEEEEcCC--CeEEEEEee
Confidence            89999999 7777776  666777654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=93.41  E-value=11  Score=39.10  Aligned_cols=207  Identities=13%  Similarity=0.067  Sum_probs=111.0

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      ...+++.+++-.....+.+.+++.... .....+..+     ..-..+.++|+++.++......      ..+.+.++|.
T Consensus        80 ~v~~~~~~vyv~~~~~~~v~vid~~~~-~~~~~~~vG-----~~P~~~~~~~~~~~vYV~n~~~------~~~~vsvid~  147 (381)
T COG3391          80 AVNPAGNKVYVTTGDSNTVSVIDTATN-TVLGSIPVG-----LGPVGLAVDPDGKYVYVANAGN------GNNTVSVIDA  147 (381)
T ss_pred             eeCCCCCeEEEecCCCCeEEEEcCccc-ceeeEeeec-----cCCceEEECCCCCEEEEEeccc------CCceEEEEeC
Confidence            344455556555555678888886541 111122211     1234568999999875542211      1367999999


Q ss_pred             CCCCccCcEE-eeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCC-CCCcccCCcCc
Q 008927          229 NGQNIQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF-DPTIVESPTEP  306 (548)
Q Consensus       229 ~~g~~~~~~~-L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~-~~~~~~~~~~~  306 (548)
                      .+..   ... +..+..- ..-.++|||++++ +...      ....|.+++.+. ..+   ..-... ...........
T Consensus       148 ~t~~---~~~~~~vG~~P-~~~a~~p~g~~vy-v~~~------~~~~v~vi~~~~-~~v---~~~~~~~~~~~~~~P~~i  212 (381)
T COG3391         148 ATNK---VTATIPVGNTP-TGVAVDPDGNKVY-VTNS------DDNTVSVIDTSG-NSV---VRGSVGSLVGVGTGPAGI  212 (381)
T ss_pred             CCCe---EEEEEecCCCc-ceEEECCCCCeEE-EEec------CCCeEEEEeCCC-cce---eccccccccccCCCCceE
Confidence            8876   322 2222211 3557999999875 5521      256788888653 221   110000 00000344667


Q ss_pred             eECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeec-ccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927          307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (548)
Q Consensus       307 ~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~-~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~  385 (548)
                      .++|||+.+|+.+..+....+..+|..++.+.... +...    . +..+   ....|   +++.+|.....  ...++.
T Consensus       213 ~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~----~-~~~~---v~~~p---~g~~~yv~~~~--~~~V~v  279 (381)
T COG3391         213 AVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS----G-APRG---VAVDP---AGKAAYVANSQ--GGTVSV  279 (381)
T ss_pred             EECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc----C-CCCc---eeECC---CCCEEEEEecC--CCeEEE
Confidence            89999995555544243457888998887765441 1111    0 1111   22333   67766654333  456777


Q ss_pred             EECCCCceEe
Q 008927          386 LDDFGHSLSL  395 (548)
Q Consensus       386 ~dl~~g~~~~  395 (548)
                      +|..+..+..
T Consensus       280 id~~~~~v~~  289 (381)
T COG3391         280 IDGATDRVVK  289 (381)
T ss_pred             EeCCCCceee
Confidence            8876655443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=93.35  E-value=2.2  Score=44.38  Aligned_cols=177  Identities=12%  Similarity=0.173  Sum_probs=95.8

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE---eee-cCCceeeeEECCCCCEEEEEEecCCCC
Q 008927          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV---LVS-GSDFYAFPRMDPRGERMAWIEWHHPNM  268 (548)
Q Consensus       193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~---L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~  268 (548)
                      +....++|||+.|+.--+         -..|-++||..-.   +++   |+. +...| ..+.|||.| |+|..-.    
T Consensus       468 iRSckL~pdgrtLivGGe---------astlsiWDLAapT---prikaeltssapaCy-ALa~spDak-vcFsccs----  529 (705)
T KOG0639|consen  468 IRSCKLLPDGRTLIVGGE---------ASTLSIWDLAAPT---PRIKAELTSSAPACY-ALAISPDAK-VCFSCCS----  529 (705)
T ss_pred             eeeeEecCCCceEEeccc---------cceeeeeeccCCC---cchhhhcCCcchhhh-hhhcCCccc-eeeeecc----
Confidence            446779999998766322         2467788888765   332   332 22233 457899987 6776633    


Q ss_pred             CCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccC
Q 008927          269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFS  348 (548)
Q Consensus       269 p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~  348 (548)
                         ..+|.|.|+.. ..  .++.+.+..    ....-...++||.-++..-. +  ..+-.+|+..+.  ++.  +.||.
T Consensus       530 ---dGnI~vwDLhn-q~--~VrqfqGht----DGascIdis~dGtklWTGGl-D--ntvRcWDlregr--qlq--qhdF~  592 (705)
T KOG0639|consen  530 ---DGNIAVWDLHN-QT--LVRQFQGHT----DGASCIDISKDGTKLWTGGL-D--NTVRCWDLREGR--QLQ--QHDFS  592 (705)
T ss_pred             ---CCcEEEEEccc-ce--eeecccCCC----CCceeEEecCCCceeecCCC-c--cceeehhhhhhh--hhh--hhhhh
Confidence               35688889873 32  245565544    33455677888872233111 1  124455654432  222  23444


Q ss_pred             CCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCceeEee--eecCCEEEE
Q 008927          349 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFV  415 (548)
Q Consensus       349 ~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~~~--s~d~~~l~~  415 (548)
                      ...+++|   |.+     .+++|++... +  .++.++.....+..+|......+-.+  +..|++++-
T Consensus       593 SQIfSLg---~cP-----~~dWlavGMe-n--s~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvS  650 (705)
T KOG0639|consen  593 SQIFSLG---YCP-----TGDWLAVGME-N--SNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVS  650 (705)
T ss_pred             hhheecc---cCC-----Cccceeeecc-c--CcEEEEecCCccceeecccccEEEEEEecccCceeee
Confidence            4333333   333     5677765443 2  33445554444455666554444444  567775543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=93.33  E-value=8.5  Score=37.51  Aligned_cols=153  Identities=12%  Similarity=0.127  Sum_probs=74.4

Q ss_pred             CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEec-cCCCCCCceeEEEEEECCCCC--ccCcEEee
Q 008927          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVRED-RRQDALNSTTEIVAIALNGQN--IQEPKVLV  240 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~-~~~~~~~~~~~l~~idl~~g~--~~~~~~L~  240 (548)
                      ++|+.++.++.  +.-+.+..........+-++.-+|-.++|+..+.. ..+...-....||.|+-.-+.  ..+...+.
T Consensus        39 dNqVhll~~d~--e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~  116 (370)
T KOG1007|consen   39 DNQVHLLRLDS--EGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA  116 (370)
T ss_pred             cceeEEEEecC--ccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence            57888887764  22222211110112234455667866777665443 222111123457776544332  11111121


Q ss_pred             ----ecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc--CCc-
Q 008927          241 ----SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS--KGE-  313 (548)
Q Consensus       241 ----~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp--DG~-  313 (548)
                          +.-+...-..|-|++++|+-+.         ..+|.+.+++.+.++. ..+......+.......-.|||  ||. 
T Consensus       117 ~Ldteavg~i~cvew~Pns~klasm~---------dn~i~l~~l~ess~~v-aev~ss~s~e~~~~ftsg~WspHHdgnq  186 (370)
T KOG1007|consen  117 SLDTEAVGKINCVEWEPNSDKLASMD---------DNNIVLWSLDESSKIV-AEVLSSESAEMRHSFTSGAWSPHHDGNQ  186 (370)
T ss_pred             cCCHHHhCceeeEEEcCCCCeeEEec---------cCceEEEEcccCcchh-eeecccccccccceecccccCCCCccce
Confidence                1122344567999999998654         2457777777433211 1122111101013456778998  677 


Q ss_pred             EEEEEeCCCCeeeEEEEecc
Q 008927          314 LFFVTDRKNGFWNLHKWIES  333 (548)
Q Consensus       314 L~~~sd~~~g~~~Ly~~d~~  333 (548)
                      +...+|.     .|..+|..
T Consensus       187 v~tt~d~-----tl~~~D~R  201 (370)
T KOG1007|consen  187 VATTSDS-----TLQFWDLR  201 (370)
T ss_pred             EEEeCCC-----cEEEEEcc
Confidence            6555555     45556654

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=93.31  E-value=1.3  Score=48.87  Aligned_cols=91  Identities=10%  Similarity=0.139  Sum_probs=56.4

Q ss_pred             eEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (548)
Q Consensus       221 ~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~  300 (548)
                      ..|.++|..+.+.  .|.+-...+......||||||||+-.+.        .+.|.+.|+.. +.+-....+.       
T Consensus       556 f~I~vvD~~t~kv--vR~f~gh~nritd~~FS~DgrWlisasm--------D~tIr~wDlpt-~~lID~~~vd-------  617 (910)
T KOG1539|consen  556 FSIRVVDVVTRKV--VREFWGHGNRITDMTFSPDGRWLISASM--------DSTIRTWDLPT-GTLIDGLLVD-------  617 (910)
T ss_pred             eeEEEEEchhhhh--hHHhhccccceeeeEeCCCCcEEEEeec--------CCcEEEEeccC-cceeeeEecC-------
Confidence            5788999888762  3333333445778899999999985442        35688899985 4321111121       


Q ss_pred             cCCcCceECcCCcEEEEEeCCCCeeeEEEEe
Q 008927          301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWI  331 (548)
Q Consensus       301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d  331 (548)
                      ..+....+||+|+++..+-.  +...||++.
T Consensus       618 ~~~~sls~SPngD~LAT~Hv--d~~gIylWs  646 (910)
T KOG1539|consen  618 SPCTSLSFSPNGDFLATVHV--DQNGIYLWS  646 (910)
T ss_pred             CcceeeEECCCCCEEEEEEe--cCceEEEEE
Confidence            23567899999994444322  223466663

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=93.31  E-value=1.7  Score=45.19  Aligned_cols=91  Identities=19%  Similarity=0.335  Sum_probs=56.9

Q ss_pred             eEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc-eeeeEEEcCCCCCc
Q 008927          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTI  299 (548)
Q Consensus       221 ~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~-~~~~~~l~~~~~~~  299 (548)
                      ...+++|.++..   ...+.......+-.++||||..||.-+  +      ...||++.++.+|. ........+     
T Consensus       428 G~w~V~d~e~~~---lv~~~~d~~~ls~v~ysp~G~~lAvgs--~------d~~iyiy~Vs~~g~~y~r~~k~~g-----  491 (626)
T KOG2106|consen  428 GRWFVLDTETQD---LVTIHTDNEQLSVVRYSPDGAFLAVGS--H------DNHIYIYRVSANGRKYSRVGKCSG-----  491 (626)
T ss_pred             ceEEEEecccce---eEEEEecCCceEEEEEcCCCCEEEEec--C------CCeEEEEEECCCCcEEEEeeeecC-----
Confidence            467888988865   444443355567779999999999544  2      34688888887664 111122222     


Q ss_pred             ccCCcCceECcCCcEEEEEeCCCCeeeEEEEe
Q 008927          300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWI  331 (548)
Q Consensus       300 ~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d  331 (548)
                       ..+..+.||+|++.+ +++.  +-++|..+.
T Consensus       492 -s~ithLDwS~Ds~~~-~~~S--~d~eiLyW~  519 (626)
T KOG2106|consen  492 -SPITHLDWSSDSQFL-VSNS--GDYEILYWK  519 (626)
T ss_pred             -ceeEEeeecCCCceE-Eecc--CceEEEEEc
Confidence             246778999999633 4433  445555553

>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3

Probab=93.26  E-value=0.12  Score=50.16  Aligned_cols=52  Identities=19%  Similarity=0.202  Sum_probs=37.4

Q ss_pred             EEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927          477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       477 g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG  537 (548)
                      -.+|.|+.       ...||+||+.||=-  ....-|....+.+||.||+|+.++...-.+
T Consensus         6 l~v~~P~~-------~g~yPVv~f~~G~~--~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~   57 (259)
T PF12740_consen    6 LLVYYPSS-------AGTYPVVLFLHGFL--LINSWYSQLLEHVASHGYIVVAPDLYSIGG   57 (259)
T ss_pred             eEEEecCC-------CCCcCEEEEeCCcC--CCHHHHHHHHHHHHhCceEEEEecccccCC
Confidence            35778864       35799999999954  111125566788999999999999655444

1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.24  E-value=1.7  Score=44.07  Aligned_cols=158  Identities=11%  Similarity=-0.001  Sum_probs=84.7

Q ss_pred             eeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCC---C-EEEEEEeccCCCCCCceeEE
Q 008927          148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRF---N-RYVTVREDRRQDALNSTTEI  223 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG---~-~i~~v~~~~~~~~~~~~~~l  223 (548)
                      -.|++||+.|+++......+|-.+. |  .....+|+..  ....+....|+.|+   . +|+.+..+.+      .-.+
T Consensus       192 L~FS~dgk~lasig~d~~~VW~~~~-g--~~~a~~t~~~--k~~~~~~cRF~~d~~~~~l~laa~~~~~~------~v~~  260 (398)
T KOG0771|consen  192 LDFSPDGKFLASIGADSARVWSVNT-G--AALARKTPFS--KDEMFSSCRFSVDNAQETLRLAASQFPGG------GVRL  260 (398)
T ss_pred             ceeCCCCcEEEEecCCceEEEEecc-C--chhhhcCCcc--cchhhhhceecccCCCceEEEEEecCCCC------ceeE
Confidence            4789999999998755557776553 2  3446677642  35678888888776   2 2222222221      1122


Q ss_pred             EEEECCCC-CccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccC
Q 008927          224 VAIALNGQ-NIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES  302 (548)
Q Consensus       224 ~~idl~~g-~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~  302 (548)
                      +.+-+..+ +....++........+...+|+||+.+|.-. .       ...+-+++...   ++....+.... .  ..
T Consensus       261 ~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT-~-------dGsVai~~~~~---lq~~~~vk~aH-~--~~  326 (398)
T KOG0771|consen  261 CDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT-M-------DGSVAIYDAKS---LQRLQYVKEAH-L--GF  326 (398)
T ss_pred             EEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec-c-------CCcEEEEEece---eeeeEeehhhh-e--ee
Confidence            33333333 1000333333344567889999999998544 2       23566666542   21122222111 1  45


Q ss_pred             CcCceECcCCc-EEEEEeCCCCeeeEEEEec
Q 008927          303 PTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE  332 (548)
Q Consensus       303 ~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~  332 (548)
                      +....|+||.+ +.=++-  +...+|..+..
T Consensus       327 VT~ltF~Pdsr~~~svSs--~~~~~v~~l~v  355 (398)
T KOG0771|consen  327 VTGLTFSPDSRYLASVSS--DNEAAVTKLAV  355 (398)
T ss_pred             eeeEEEcCCcCccccccc--CCceeEEEEee
Confidence            77889999976 443332  22334555543

>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]

Probab=93.11  E-value=0.087  Score=52.20  Aligned_cols=39  Identities=26%  Similarity=0.345  Sum_probs=32.6

Q ss_pred             CcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       495 ~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      -|+|+++||=|+..+.  |...+-.|+++||.|+.+|.||.
T Consensus        44 gP~illlHGfPe~wys--wr~q~~~la~~~~rviA~DlrGy   82 (322)
T KOG4178|consen   44 GPIVLLLHGFPESWYS--WRHQIPGLASRGYRVIAPDLRGY   82 (322)
T ss_pred             CCEEEEEccCCccchh--hhhhhhhhhhcceEEEecCCCCC
Confidence            4999999999997764  34445579999999999999984

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=92.97  E-value=13  Score=38.46  Aligned_cols=227  Identities=12%  Similarity=0.076  Sum_probs=107.8

Q ss_pred             EEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927          151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (548)
Q Consensus       151 ~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~  229 (548)
                      ..+++.|++.. .++.||.+|.+.  |+.. +....    ......+..  +++.|++. ..        ...|+.+|++
T Consensus       102 ~v~~~~v~v~~-~~g~l~ald~~t--G~~~W~~~~~----~~~~~~p~v--~~~~v~v~-~~--------~g~l~a~d~~  163 (377)
T TIGR03300       102 GADGGLVFVGT-EKGEVIALDAED--GKELWRAKLS----SEVLSPPLV--ANGLVVVR-TN--------DGRLTALDAA  163 (377)
T ss_pred             EEcCCEEEEEc-CCCEEEEEECCC--CcEeeeeccC----ceeecCCEE--ECCEEEEE-CC--------CCeEEEEEcC
Confidence            34566666543 467899999875  4432 22111    112233333  23444442 21        2479999999


Q ss_pred             CCCccCcEEeeec--CC----ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCC----c
Q 008927          230 GQNIQEPKVLVSG--SD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT----I  299 (548)
Q Consensus       230 ~g~~~~~~~L~~~--~~----~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~----~  299 (548)
                      +|+   ..--...  ..    ....|... ++ .+ |+..       ....++.+|++. |+..-...+......    .
T Consensus       164 tG~---~~W~~~~~~~~~~~~~~~sp~~~-~~-~v-~~~~-------~~g~v~ald~~t-G~~~W~~~~~~~~g~~~~~~  229 (377)
T TIGR03300       164 TGE---RLWTYSRVTPALTLRGSASPVIA-DG-GV-LVGF-------AGGKLVALDLQT-GQPLWEQRVALPKGRTELER  229 (377)
T ss_pred             CCc---eeeEEccCCCceeecCCCCCEEE-CC-EE-EEEC-------CCCEEEEEEccC-CCEeeeeccccCCCCCchhh
Confidence            987   3221111  10    11234433 33 33 3431       135788888873 542101111110000    0


Q ss_pred             -ccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC
Q 008927          300 -VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (548)
Q Consensus       300 -~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~  378 (548)
                       ......|.. .++.+|+.+ . .|  .|+.+|+++|+..--...    .  .+    .....     +++.||+..   
T Consensus       230 ~~~~~~~p~~-~~~~vy~~~-~-~g--~l~a~d~~tG~~~W~~~~----~--~~----~~p~~-----~~~~vyv~~---  286 (377)
T TIGR03300       230 LVDVDGDPVV-DGGQVYAVS-Y-QG--RVAALDLRSGRVLWKRDA----S--SY----QGPAV-----DDNRLYVTD---  286 (377)
T ss_pred             hhccCCccEE-ECCEEEEEE-c-CC--EEEEEECCCCcEEEeecc----C--Cc----cCceE-----eCCEEEEEC---
Confidence             001123433 234355544 3 33  588999988875422210    0  11    11122     466777653   


Q ss_pred             CeEEEEEEECCCCceE-ee-cCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          379 GRSYLGILDDFGHSLS-LL-DIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       379 g~~~L~~~dl~~g~~~-~l-~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      ....|+.+|..+|+.. .. .............++.+++...    -..|+.+|.++++.
T Consensus       287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~----~G~l~~~d~~tG~~  342 (377)
T TIGR03300       287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDF----EGYLHWLSREDGSF  342 (377)
T ss_pred             CCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeC----CCEEEEEECCCCCE
Confidence            3457899999888653 12 1111122222335666655432    35799999888874

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=92.91  E-value=6.6  Score=39.83  Aligned_cols=201  Identities=10%  Similarity=0.055  Sum_probs=104.6

Q ss_pred             cCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCC--CC-CccccceeeCCeeeEEECCEEEEEeCCCCe
Q 008927           91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPK--EY-AVRTTAQEYGGGAFRIFGDTVIFSNYKDQR  166 (548)
Q Consensus        91 ~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~--~~-~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~  166 (548)
                      +-+..|+| ++.+.-.   -.|+-..-||.+...  +-.+.|+..  .. .-.-+|   |--.|-|.-.-|+++...++.
T Consensus        84 vLDi~w~PfnD~vIAS---gSeD~~v~vW~IPe~--~l~~~ltepvv~L~gH~rrV---g~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   84 VLDIDWCPFNDCVIAS---GSEDTKVMVWQIPEN--GLTRDLTEPVVELYGHQRRV---GLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             ccccccCccCCceeec---CCCCceEEEEECCCc--ccccCcccceEEEeecceeE---EEEeecccchhhHhhccCCce
Confidence            34667788 6665332   223456667877655  345555521  00 000111   223566666667777777777


Q ss_pred             EEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCc
Q 008927          167 LYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF  245 (548)
Q Consensus       167 Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~  245 (548)
                      +..-+..+  |+. ..|..     +..+-+..|+-||..++.++.|.         .|-++|..+|+     ++.++...
T Consensus       156 v~iWnv~t--geali~l~h-----pd~i~S~sfn~dGs~l~TtckDK---------kvRv~dpr~~~-----~v~e~~~h  214 (472)
T KOG0303|consen  156 VSIWNVGT--GEALITLDH-----PDMVYSMSFNRDGSLLCTTCKDK---------KVRVIDPRRGT-----VVSEGVAH  214 (472)
T ss_pred             EEEEeccC--CceeeecCC-----CCeEEEEEeccCCceeeeecccc---------eeEEEcCCCCc-----Eeeecccc
Confidence            76667766  443 34442     12455678999999988877664         47778888876     33333111


Q ss_pred             ----eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCC
Q 008927          246 ----YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK  321 (548)
Q Consensus       246 ----~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~  321 (548)
                          -.-..|--||+ |+ .. ....|  ...++-+.|.+.-.+.-....+...     ..+.-|.|.+|.+++|+.-++
T Consensus       215 eG~k~~Raifl~~g~-i~-tT-Gfsr~--seRq~aLwdp~nl~eP~~~~elDtS-----nGvl~PFyD~dt~ivYl~GKG  284 (472)
T KOG0303|consen  215 EGAKPARAIFLASGK-IF-TT-GFSRM--SERQIALWDPNNLEEPIALQELDTS-----NGVLLPFYDPDTSIVYLCGKG  284 (472)
T ss_pred             cCCCcceeEEeccCc-ee-ee-ccccc--cccceeccCcccccCcceeEEeccC-----CceEEeeecCCCCEEEEEecC
Confidence                11224556676 33 22 11111  2233433333211110011223222     346678899998877776664


Q ss_pred             CCeeeEEEE
Q 008927          322 NGFWNLHKW  330 (548)
Q Consensus       322 ~g~~~Ly~~  330 (548)
                      ++.-+-|-+
T Consensus       285 D~~IRYyEi  293 (472)
T KOG0303|consen  285 DSSIRYFEI  293 (472)
T ss_pred             CcceEEEEe
Confidence            554444444

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=92.90  E-value=17  Score=39.95  Aligned_cols=59  Identities=17%  Similarity=0.248  Sum_probs=34.0

Q ss_pred             eCCee--eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEE
Q 008927          145 YGGGA--FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTV  208 (548)
Q Consensus       145 ygg~~--~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v  208 (548)
                      |.||.  |+.+|+.| |+.. ...|-.+++.+  +... ++....+......++..+||++.|+..
T Consensus        20 YtGG~~~~s~nG~~L-~t~~-~d~Vi~idv~t--~~~~-l~s~~~ed~d~ita~~l~~d~~~L~~a   80 (775)
T KOG0319|consen   20 YTGGPVAWSSNGQHL-YTAC-GDRVIIIDVAT--GSIA-LPSGSNEDEDEITALALTPDEEVLVTA   80 (775)
T ss_pred             ecCCceeECCCCCEE-EEec-CceEEEEEccC--Ccee-cccCCccchhhhheeeecCCccEEEEe
Confidence            44543  44455544 4432 33577788876  4332 444332234557778899998887664

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.86  E-value=4.9  Score=41.52  Aligned_cols=109  Identities=12%  Similarity=0.169  Sum_probs=56.9

Q ss_pred             EEEEEECCC--CCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEE-EecCCCcee-ee-EEEcCCC
Q 008927          222 EIVAIALNG--QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG-YISENGDVY-KR-VCVAGFD  296 (548)
Q Consensus       222 ~l~~idl~~--g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~-~~~~~g~~~-~~-~~l~~~~  296 (548)
                      +|++++-..  |...+.+++.++...-....+.+||  | |++ .       ..+|+.+ +.+.++... +. .++.+..
T Consensus        48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--l-yV~-~-------~~~i~~~~d~~gdg~ad~~~~~l~~~~~  116 (367)
T TIGR02604        48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--V-YVA-T-------PPDILFLRDKDGDDKADGEREVLLSGFG  116 (367)
T ss_pred             EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--E-EEe-C-------CCeEEEEeCCCCCCCCCCccEEEEEccC
Confidence            677776532  2211134555554444566788888  3 454 1       2357655 444333221 22 2333221


Q ss_pred             CC---cccCCcCceECcCCcEEEEEe-CCC---------------CeeeEEEEeccCCeeEeec
Q 008927          297 PT---IVESPTEPKWSSKGELFFVTD-RKN---------------GFWNLHKWIESNNEVLAIY  341 (548)
Q Consensus       297 ~~---~~~~~~~~~wspDG~L~~~sd-~~~---------------g~~~Ly~~d~~~g~~~~l~  341 (548)
                      ..   .......+.|.|||+||+..- ...               -...++++++++++.+.+.
T Consensus       117 ~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a  180 (367)
T TIGR02604       117 GQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVA  180 (367)
T ss_pred             CCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEe
Confidence            00   002355789999999888532 100               0135899999888776554

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=92.83  E-value=0.11  Score=54.10  Aligned_cols=55  Identities=15%  Similarity=0.077  Sum_probs=36.3

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee-cCCceeeeEECCCCCEEE
Q 008927          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMA  259 (548)
Q Consensus       193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~-~~~~~~~p~~SPDGk~La  259 (548)
                      +..+.|||||+.|++|+.|.         .|-+.|-++.+   ..-+.. --+-..-..||||||+|+
T Consensus       293 in~f~FS~DG~~LA~VSqDG---------fLRvF~fdt~e---Llg~mkSYFGGLLCvcWSPDGKyIv  348 (636)
T KOG2394|consen  293 INEFAFSPDGKYLATVSQDG---------FLRIFDFDTQE---LLGVMKSYFGGLLCVCWSPDGKYIV  348 (636)
T ss_pred             ccceeEcCCCceEEEEecCc---------eEEEeeccHHH---HHHHHHhhccceEEEEEcCCccEEE
Confidence            44688999999999997663         56666766654   222221 111123458999999987

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=92.76  E-value=12  Score=37.65  Aligned_cols=156  Identities=12%  Similarity=0.053  Sum_probs=88.5

Q ss_pred             CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCC
Q 008927          243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN  322 (548)
Q Consensus       243 ~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~  322 (548)
                      .+.......+|+...++ ..  ..     ...-|+.++. .|+  ..-.+++..    .++....||.||.++...|. +
T Consensus        64 ~~svFavsl~P~~~l~a-TG--Gg-----DD~AflW~~~-~ge--~~~eltgHK----DSVt~~~FshdgtlLATGdm-s  127 (399)
T KOG0296|consen   64 TDSVFAVSLHPNNNLVA-TG--GG-----DDLAFLWDIS-TGE--FAGELTGHK----DSVTCCSFSHDGTLLATGDM-S  127 (399)
T ss_pred             CCceEEEEeCCCCceEE-ec--CC-----CceEEEEEcc-CCc--ceeEecCCC----CceEEEEEccCceEEEecCC-C
Confidence            33344557788555333 32  11     2345666776 454  245567765    68999999999998888887 7


Q ss_pred             CeeeEEEEeccCCeeE-eecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCC-C
Q 008927          323 GFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP-F  400 (548)
Q Consensus       323 g~~~Ly~~d~~~g~~~-~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~-~  400 (548)
                      |.-.||..+  +|..+ .+..+   .+...|.      .|-|   . ..|++.-..+|.  ++.+.+..+...++-.+ .
T Consensus       128 G~v~v~~~s--tg~~~~~~~~e---~~dieWl------~WHp---~-a~illAG~~DGs--vWmw~ip~~~~~kv~~Gh~  190 (399)
T KOG0296|consen  128 GKVLVFKVS--TGGEQWKLDQE---VEDIEWL------KWHP---R-AHILLAGSTDGS--VWMWQIPSQALCKVMSGHN  190 (399)
T ss_pred             ccEEEEEcc--cCceEEEeecc---cCceEEE------Eecc---c-ccEEEeecCCCc--EEEEECCCcceeeEecCCC
Confidence            876666655  45443 33211   2223342      2332   2 345444445564  44444445444444322 2


Q ss_pred             ce--eEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          401 TD--IDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       401 ~~--~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      ..  ..-+.+||++++....    .+.|.+++++++.
T Consensus       191 ~~ct~G~f~pdGKr~~tgy~----dgti~~Wn~ktg~  223 (399)
T KOG0296|consen  191 SPCTCGEFIPDGKRILTGYD----DGTIIVWNPKTGQ  223 (399)
T ss_pred             CCcccccccCCCceEEEEec----CceEEEEecCCCc
Confidence            11  2345788988876665    3678888998886

>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A

Probab=92.67  E-value=0.13  Score=44.74  Aligned_cols=41  Identities=24%  Similarity=0.294  Sum_probs=33.2

Q ss_pred             EEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCC
Q 008927          497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLS  539 (548)
Q Consensus       497 liv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG  539 (548)
                      +||++||+-..  ...|....+.|+++||.|+.+|+||.....
T Consensus         1 ~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~   41 (145)
T PF12695_consen    1 VVVLLHGWGGS--RRDYQPLAEALAEQGYAVVAFDYPGHGDSD   41 (145)
T ss_dssp             EEEEECTTTTT--THHHHHHHHHHHHTTEEEEEESCTTSTTSH
T ss_pred             CEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEecCCCCccc
Confidence            58999999654  334667788999999999999999987653

...

>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily

Probab=92.64  E-value=0.24  Score=49.68  Aligned_cols=57  Identities=18%  Similarity=0.217  Sum_probs=36.4

Q ss_pred             EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCC
Q 008927          464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       464 i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      -++... ||.+++...+-+        ++  -|.||++||+|......   ....+|..++|.|+.+|+||
T Consensus         7 ~~~~~~-~~~~l~y~~~g~--------~~--~~~lvllHG~~~~~~~~---~~~~~~~~~~~~vi~~D~~G   63 (306)
T TIGR01249         7 GYLNVS-DNHQLYYEQSGN--------PD--GKPVVFLHGGPGSGTDP---GCRRFFDPETYRIVLFDQRG   63 (306)
T ss_pred             CeEEcC-CCcEEEEEECcC--------CC--CCEEEEECCCCCCCCCH---HHHhccCccCCEEEEECCCC
Confidence            345555 788877544321        01  24578999998764321   12234556899999999998

This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=92.58  E-value=15  Score=38.24  Aligned_cols=243  Identities=14%  Similarity=0.081  Sum_probs=128.6

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      .+.+++..++..+.....+..++...  .........   ..........+++|.+++....+        .+.+.++|.
T Consensus        37 ~~~~~g~~~~v~~~~~~~~~~~~~~~--n~~~~~~~~---g~~~p~~i~v~~~~~~vyv~~~~--------~~~v~vid~  103 (381)
T COG3391          37 AVNPDGTQVYVANSGSNDVSVIDATS--NTVTQSLSV---GGVYPAGVAVNPAGNKVYVTTGD--------SNTVSVIDT  103 (381)
T ss_pred             EEcCccCEEEEEeecCceeeeccccc--ceeeeeccC---CCccccceeeCCCCCeEEEecCC--------CCeEEEEcC
Confidence            44556666666664444555554431  111211111   01223355688888876443222        257889997


Q ss_pred             CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      ++...  ...+.-+. .-....++|||+.+. +.....    ....+.++|-.. +++.. . +.-+     ........
T Consensus       104 ~~~~~--~~~~~vG~-~P~~~~~~~~~~~vY-V~n~~~----~~~~vsvid~~t-~~~~~-~-~~vG-----~~P~~~a~  167 (381)
T COG3391         104 ATNTV--LGSIPVGL-GPVGLAVDPDGKYVY-VANAGN----GNNTVSVIDAAT-NKVTA-T-IPVG-----NTPTGVAV  167 (381)
T ss_pred             cccce--eeEeeecc-CCceEEECCCCCEEE-EEeccc----CCceEEEEeCCC-CeEEE-E-EecC-----CCcceEEE
Confidence            66541  12222222 223457999999875 552210    246788888663 33211 1 2221     12356789


Q ss_pred             CcCCcEEEEEeCCCCeeeEEEEeccCCeeEeeccc---ccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927          309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL---DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (548)
Q Consensus       309 spDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~---~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~  385 (548)
                      +|+|+.+++.+.  +...|..++..+..+.+ ...   -.....|.      ...+.+   ++.++|..-.......+..
T Consensus       168 ~p~g~~vyv~~~--~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~------~i~v~~---~g~~~yV~~~~~~~~~v~~  235 (381)
T COG3391         168 DPDGNKVYVTNS--DDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPA------GIAVDP---DGNRVYVANDGSGSNNVLK  235 (381)
T ss_pred             CCCCCeEEEEec--CCCeEEEEeCCCcceec-cccccccccCCCCc------eEEECC---CCCEEEEEeccCCCceEEE
Confidence            999995555553  33467788876655443 110   00111111      123333   7777776554433457889


Q ss_pred             EECCCCceEeecCCCc--e-e-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          386 LDDFGHSLSLLDIPFT--D-I-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       386 ~dl~~g~~~~l~~~~~--~-~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      +|..++.+.....+..  . . -.++++++.+++....   ...++.+|..+..
T Consensus       236 id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~~~  286 (381)
T COG3391         236 IDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ---GGTVSVIDGATDR  286 (381)
T ss_pred             EeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC---CCeEEEEeCCCCc
Confidence            9998887766532211  1 1 1226778777666543   5678888876654

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=92.55  E-value=12  Score=37.23  Aligned_cols=49  Identities=16%  Similarity=0.153  Sum_probs=28.0

Q ss_pred             CCEEEEEEEeCCeEEEEEEECCCCceEeecCCCceeEeeeecCCEEEEEEec
Q 008927          368 KNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGAS  419 (548)
Q Consensus       368 ~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~~~s~d~~~l~~~~ss  419 (548)
                      +++|++.  +.+..+++.+|+++|+.+.+..-.+...++.-.|+. +|++-+
T Consensus       212 dgrLwvl--dsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~l-lvVgmS  260 (335)
T TIGR03032       212 QGKLWLL--NSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDF-AFVGLS  260 (335)
T ss_pred             CCeEEEE--ECCCCEEEEEcCCCCcEEEEEECCCCCcccceeCCE-EEEEec
Confidence            3456554  356778999999889888775311223344333444 444433

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=92.53  E-value=6  Score=38.15  Aligned_cols=121  Identities=12%  Similarity=0.031  Sum_probs=69.9

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE--eee--cCCceeeeEECCCCCEEEEEEecCCCC
Q 008927          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV--LVS--GSDFYAFPRMDPRGERMAWIEWHHPNM  268 (548)
Q Consensus       193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~--L~~--~~~~~~~p~~SPDGk~La~~~~~~~~~  268 (548)
                      .....+|+|+++.+.|. +.      ++--+|.||-++..   ...  +..  ..+|+  -.||......|....     
T Consensus       161 ~ns~~~snd~~~~~~Vg-ds------~~Vf~y~id~~sey---~~~~~~a~t~D~gF~--~S~s~~~~~FAv~~Q-----  223 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVG-DS------RRVFRYAIDDESEY---IENIYEAPTSDHGFY--NSFSENDLQFAVVFQ-----  223 (344)
T ss_pred             eeeeEEcCCCceEEEec-CC------CcceEEEeCCccce---eeeeEecccCCCcee--eeeccCcceEEEEec-----
Confidence            44567999999998883 32      12345666665554   222  222  23343  368887777775542     


Q ss_pred             CCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc--EEEEEeCCCCeeeEEEEeccCCeeE
Q 008927          269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNEVL  338 (548)
Q Consensus       269 p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~--L~~~sd~~~g~~~Ly~~d~~~g~~~  338 (548)
                         ...+.+.|+...+.+  .+..+...+...+++....|++-|-  |+|+++.   +..+.++|..+++-.
T Consensus       224 ---dg~~~I~DVR~~~tp--m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh---fs~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  224 ---DGTCAIYDVRNMATP--MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH---FSRVHVVDTRNYVNH  287 (344)
T ss_pred             ---CCcEEEEEecccccc--hhhhcccCCCCCCceEEEEecCCCcceEEEEecC---cceEEEEEcccCcee
Confidence               345777888755431  1111111101115667778998775  8888864   446777787676543

>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]

Probab=92.49  E-value=0.32  Score=47.72  Aligned_cols=63  Identities=19%  Similarity=0.290  Sum_probs=46.8

Q ss_pred             EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       465 ~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      -++.. +|..++--...|.+.      .+..-+|+++||.- ......|...+-.|+..||+|+..|++|-
T Consensus        31 ~~~n~-rG~~lft~~W~p~~~------~~pr~lv~~~HG~g-~~~s~~~~~~a~~l~~~g~~v~a~D~~Gh   93 (313)
T KOG1455|consen   31 FFTNP-RGAKLFTQSWLPLSG------TEPRGLVFLCHGYG-EHSSWRYQSTAKRLAKSGFAVYAIDYEGH   93 (313)
T ss_pred             eEEcC-CCCEeEEEecccCCC------CCCceEEEEEcCCc-ccchhhHHHHHHHHHhCCCeEEEeeccCC
Confidence            35565 899999999999641      25668999999962 22223455566679999999999999984

>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A

Probab=92.46  E-value=0.11  Score=53.87  Aligned_cols=42  Identities=19%  Similarity=0.211  Sum_probs=25.9

Q ss_pred             CCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       493 ~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      .++|+||+-||==..+  ..|+....-|||+||+|+.++.|-.+
T Consensus        98 ~~~PvvIFSHGlgg~R--~~yS~~~~eLAS~GyVV~aieHrDgS  139 (379)
T PF03403_consen   98 GKFPVVIFSHGLGGSR--TSYSAICGELASHGYVVAAIEHRDGS  139 (379)
T ss_dssp             S-EEEEEEE--TT--T--TTTHHHHHHHHHTT-EEEEE---SS-
T ss_pred             CCCCEEEEeCCCCcch--hhHHHHHHHHHhCCeEEEEeccCCCc
Confidence            5799999999964333  34667778899999999999999543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.34  E-value=12  Score=36.75  Aligned_cols=165  Identities=10%  Similarity=0.036  Sum_probs=82.8

Q ss_pred             CeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       147 g~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      +-.|.|+.+.|+-+-++..+|.-++..|  .-.+.++-..   -.......|.-+|+. +.+.|+        ...|+.+
T Consensus        90 ~LTynp~~rtLFav~n~p~~iVElt~~G--dlirtiPL~g---~~DpE~Ieyig~n~f-vi~dER--------~~~l~~~  155 (316)
T COG3204          90 SLTYNPDTRTLFAVTNKPAAIVELTKEG--DLIRTIPLTG---FSDPETIEYIGGNQF-VIVDER--------DRALYLF  155 (316)
T ss_pred             ceeeCCCcceEEEecCCCceEEEEecCC--ceEEEecccc---cCChhHeEEecCCEE-EEEehh--------cceEEEE
Confidence            3478888888877776777888888886  3344443220   001122346656554 343333        2455555


Q ss_pred             ECCCCC--ccC-cEEee--e--c-CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCC-C
Q 008927          227 ALNGQN--IQE-PKVLV--S--G-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD-P  297 (548)
Q Consensus       227 dl~~g~--~~~-~~~L~--~--~-~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~-~  297 (548)
                      .++.+.  ... ...+.  .  . +.-+...+|+|+.++|.+..-..|      ..||.+....+. +.......... .
T Consensus       156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P------~~I~~~~~~~~~-l~~~~~~~~~~~~  228 (316)
T COG3204         156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP------IGIFEVTQSPSS-LSVHASLDPTADR  228 (316)
T ss_pred             EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC------cEEEEEecCCcc-cccccccCccccc
Confidence            444331  000 00111  1  1 222466799999999876653332      457777644211 10000000000 0


Q ss_pred             C-cccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCC
Q 008927          298 T-IVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN  335 (548)
Q Consensus       298 ~-~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g  335 (548)
                      + ....++.+.+.+... |+++++. +  ..|..+|+++.
T Consensus       229 ~~f~~DvSgl~~~~~~~~LLVLS~E-S--r~l~Evd~~G~  265 (316)
T COG3204         229 DLFVLDVSGLEFNAITNSLLVLSDE-S--RRLLEVDLSGE  265 (316)
T ss_pred             ceEeeccccceecCCCCcEEEEecC-C--ceEEEEecCCC
Confidence            0 012356677776544 8888876 3  25666776443

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=92.29  E-value=2.2  Score=43.23  Aligned_cols=107  Identities=16%  Similarity=0.086  Sum_probs=70.4

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceec-ceeeCCCCCEEEEEEecc----CC-----CCCC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYA-DGIFDPRFNRYVTVREDR----RQ-----DALN  218 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~-~~~~SpDG~~i~~v~~~~----~~-----~~~~  218 (548)
                      +|...++.++.. |.---||.++.++  +.++.++...++.+.++. ++..+++| .|+|.....    ++     -.++
T Consensus       121 ~f~~~ggdL~Va-DAYlGL~~V~p~g--~~a~~l~~~~~G~~~kf~N~ldI~~~g-~vyFTDSSsk~~~rd~~~a~l~g~  196 (376)
T KOG1520|consen  121 RFDKKGGDLYVA-DAYLGLLKVGPEG--GLAELLADEAEGKPFKFLNDLDIDPEG-VVYFTDSSSKYDRRDFVFAALEGD  196 (376)
T ss_pred             EeccCCCeEEEE-ecceeeEEECCCC--CcceeccccccCeeeeecCceeEcCCC-eEEEeccccccchhheEEeeecCC
Confidence            555556555443 2334689999988  778888775433344544 57788854 466652211    10     0123


Q ss_pred             ceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEE
Q 008927          219 STTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE  262 (548)
Q Consensus       219 ~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~  262 (548)
                      ...+|+++|..+..   .++|.++-.|....++|||+..+.+..
T Consensus       197 ~~GRl~~YD~~tK~---~~VLld~L~F~NGlaLS~d~sfvl~~E  237 (376)
T KOG1520|consen  197 PTGRLFRYDPSTKV---TKVLLDGLYFPNGLALSPDGSFVLVAE  237 (376)
T ss_pred             CccceEEecCcccc---hhhhhhcccccccccCCCCCCEEEEEe
Confidence            45679999999988   788887766767778999999988776

>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A)

Probab=92.26  E-value=0.23  Score=50.57  Aligned_cols=59  Identities=17%  Similarity=0.303  Sum_probs=43.4

Q ss_pred             eeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEcc-Ccccccc--------------------Cc--c-ChHHHHHH
Q 008927          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG-GPTSEAR--------------------GI--L-NLSIQYWT  521 (548)
Q Consensus       466 ~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHG-GP~~~~~--------------------~~--~-~~~~Q~~a  521 (548)
                      |++. ||..|+.+.+.|.+         +..+||.+|| |=|+.+.                    ..  | ...++.|+
T Consensus         2 ~~~~-~g~~l~~~~~~~~~---------~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~   71 (332)
T TIGR01607         2 FRNK-DGLLLKTYSWIVKN---------AIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFN   71 (332)
T ss_pred             ccCC-CCCeEEEeeeeccC---------CeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHH
Confidence            5666 99999999998842         2379999999 3333211                    11  2 24578999


Q ss_pred             hcCcEEEEeCCCC
Q 008927          522 SRGWAFVDVNYGG  534 (548)
Q Consensus       522 srGyaVl~~NyRG  534 (548)
                      ++||.|+.+|.||
T Consensus        72 ~~G~~V~~~D~rG   84 (332)
T TIGR01607        72 KNGYSVYGLDLQG   84 (332)
T ss_pred             HCCCcEEEecccc
Confidence            9999999999998

These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=92.02  E-value=1.1  Score=46.42  Aligned_cols=141  Identities=13%  Similarity=0.051  Sum_probs=88.3

Q ss_pred             CEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCcc
Q 008927          155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ  234 (548)
Q Consensus       155 ~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~  234 (548)
                      ..|.|..-.++.|-+.|+... .-.+++....    -...-+.+|+||..|..-  .       ..+.+-.+|+..+.  
T Consensus       521 akvcFsccsdGnI~vwDLhnq-~~VrqfqGht----DGascIdis~dGtklWTG--G-------lDntvRcWDlregr--  584 (705)
T KOG0639|consen  521 AKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHT----DGASCIDISKDGTKLWTG--G-------LDNTVRCWDLREGR--  584 (705)
T ss_pred             cceeeeeccCCcEEEEEcccc-eeeecccCCC----CCceeEEecCCCceeecC--C-------Cccceeehhhhhhh--
Confidence            369999888998888888641 3345554331    123345688999887542  1       23567788998874  


Q ss_pred             CcEEeeec--CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCC
Q 008927          235 EPKVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (548)
Q Consensus       235 ~~~~L~~~--~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG  312 (548)
                         ++.+.  ...+.....+|.|.+|| +..       .++++++......    ++..+.-.+    ..+..+.|++-|
T Consensus       585 ---qlqqhdF~SQIfSLg~cP~~dWla-vGM-------ens~vevlh~skp----~kyqlhlhe----ScVLSlKFa~cG  645 (705)
T KOG0639|consen  585 ---QLQQHDFSSQIFSLGYCPTGDWLA-VGM-------ENSNVEVLHTSKP----EKYQLHLHE----SCVLSLKFAYCG  645 (705)
T ss_pred             ---hhhhhhhhhhheecccCCCcccee-eec-------ccCcEEEEecCCc----cceeecccc----cEEEEEEecccC
Confidence               23221  11234556799999998 442       3567888887632    234444433    467889999999


Q ss_pred             cEEEEEeCCCCeeeEEEEe
Q 008927          313 ELFFVTDRKNGFWNLHKWI  331 (548)
Q Consensus       313 ~L~~~sd~~~g~~~Ly~~d  331 (548)
                      +.++.+-. ++..+.|+..
T Consensus       646 kwfvStGk-DnlLnawrtP  663 (705)
T KOG0639|consen  646 KWFVSTGK-DNLLNAWRTP  663 (705)
T ss_pred             ceeeecCc-hhhhhhccCc
Confidence            86555544 5666666654

>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily

Probab=91.93  E-value=0.27  Score=47.81  Aligned_cols=40  Identities=20%  Similarity=0.216  Sum_probs=28.6

Q ss_pred             CcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       495 ~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      .|.||++||||.+... .|.....++...||.|+.+|.||.
T Consensus        25 ~~~vl~~hG~~g~~~~-~~~~~~~~l~~~g~~vi~~d~~G~   64 (288)
T TIGR01250        25 KIKLLLLHGGPGMSHE-YLENLRELLKEEGREVIMYDQLGC   64 (288)
T ss_pred             CCeEEEEcCCCCccHH-HHHHHHHHHHhcCCEEEEEcCCCC
Confidence            3778889999876532 233444555666999999999984

This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=91.84  E-value=7.8  Score=38.37  Aligned_cols=111  Identities=13%  Similarity=0.114  Sum_probs=61.1

Q ss_pred             ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC-CCCCccC-cEEeeec----CCceeeeEECC-CCCEEEEEEecCCC
Q 008927          195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL-NGQNIQE-PKVLVSG----SDFYAFPRMDP-RGERMAWIEWHHPN  267 (548)
Q Consensus       195 ~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl-~~g~~~~-~~~L~~~----~~~~~~p~~SP-DGk~La~~~~~~~~  267 (548)
                      .+.|||||..|++-  .        .+.|-+.|+ ..|..-+ ...++.+    .+..+..++|| |.+.+|+-++.   
T Consensus       163 sL~Fs~DGeqlfaG--y--------krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~---  229 (406)
T KOG2919|consen  163 SLQFSPDGEQLFAG--Y--------KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG---  229 (406)
T ss_pred             eEEecCCCCeEeec--c--------cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeeccc---
Confidence            57899999998763  2        245667776 3443100 1222221    23456678888 55577765532   


Q ss_pred             CCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEec
Q 008927          268 MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE  332 (548)
Q Consensus       268 ~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~  332 (548)
                           ..+-++.-+ ++.  ...++.+..    ..+..+.|.+||.-+|...|..  ..|..+|+
T Consensus       230 -----q~~giy~~~-~~~--pl~llggh~----gGvThL~~~edGn~lfsGaRk~--dkIl~WDi  280 (406)
T KOG2919|consen  230 -----QRVGIYNDD-GRR--PLQLLGGHG----GGVTHLQWCEDGNKLFSGARKD--DKILCWDI  280 (406)
T ss_pred             -----ceeeeEecC-CCC--ceeeecccC----CCeeeEEeccCcCeecccccCC--CeEEEEee
Confidence                 223333333 222  233444433    6799999999999555543323  24556665

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=91.78  E-value=4.3  Score=44.22  Aligned_cols=190  Identities=11%  Similarity=0.063  Sum_probs=96.9

Q ss_pred             ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeec----CCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927          195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG----SDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (548)
Q Consensus       195 ~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~----~~~~~~p~~SPDGk~La~~~~~~~~~p~  270 (548)
                      ...||++|+.|++.+.          +.|-.+|+.++.   .. +..+    .+......++||+++|+....       
T Consensus        24 ~~~~s~nG~~L~t~~~----------d~Vi~idv~t~~---~~-l~s~~~ed~d~ita~~l~~d~~~L~~a~r-------   82 (775)
T KOG0319|consen   24 PVAWSSNGQHLYTACG----------DRVIIIDVATGS---IA-LPSGSNEDEDEITALALTPDEEVLVTASR-------   82 (775)
T ss_pred             ceeECCCCCEEEEecC----------ceEEEEEccCCc---ee-cccCCccchhhhheeeecCCccEEEEeec-------
Confidence            3689999999888653          358889999987   32 3322    233567789999998875542       


Q ss_pred             CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCC
Q 008927          271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP  350 (548)
Q Consensus       271 ~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p  350 (548)
                       ..-|.+..++. |++...-...+.     ..+.-..++|-|.|+...+. .+.  +-++|.+.+...--..   ..+++
T Consensus        83 -s~llrv~~L~t-gk~irswKa~He-----~Pvi~ma~~~~g~LlAtgga-D~~--v~VWdi~~~~~th~fk---G~gGv  149 (775)
T KOG0319|consen   83 -SQLLRVWSLPT-GKLIRSWKAIHE-----APVITMAFDPTGTLLATGGA-DGR--VKVWDIKNGYCTHSFK---GHGGV  149 (775)
T ss_pred             -cceEEEEEccc-chHhHhHhhccC-----CCeEEEEEcCCCceEEeccc-cce--EEEEEeeCCEEEEEec---CCCce
Confidence             34567777774 542111111111     23445677888755444333 443  3344554443221111   22223


Q ss_pred             cccccCcceeeeeecCCC-CEEEEEEEeCCeEEEEEEECCCCce--EeecCCCceeEee--eecCCEEEEEEecCCCCCe
Q 008927          351 LWVFGINSYEIIQSHGEK-NLIACSYRQNGRSYLGILDDFGHSL--SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSS  425 (548)
Q Consensus       351 ~w~~~~~~~~~~~~~~d~-~~l~~~~~~~g~~~L~~~dl~~g~~--~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~  425 (548)
                      .|.     ..|.|   +- .++++....++  .++++|+.++..  ..+....+.+.++  ..|+..++.++.    -.-
T Consensus       150 Vss-----l~F~~---~~~~~lL~sg~~D~--~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkv  215 (775)
T KOG0319|consen  150 VSS-----LLFHP---HWNRWLLASGATDG--TVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKV  215 (775)
T ss_pred             EEE-----EEeCC---ccchhheeecCCCc--eEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcE
Confidence            322     12221   21 23444443444  455566655443  1222334455554  456555544432    234


Q ss_pred             EEEEEcC
Q 008927          426 VAKVTLD  432 (548)
Q Consensus       426 l~~~d~~  432 (548)
                      ++++|+.
T Consensus       216 i~vwd~~  222 (775)
T KOG0319|consen  216 IIVWDLV  222 (775)
T ss_pred             EEEeehh
Confidence            5566653

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=91.66  E-value=2  Score=45.00  Aligned_cols=52  Identities=6%  Similarity=0.046  Sum_probs=34.6

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVT  207 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~  207 (548)
                      +|.|+...|+|.+  .++++.-++..+ ..+.+--..    ..-+-...|+|..+.|+-
T Consensus       152 ~W~p~S~~vl~c~--g~h~~IKpL~~n-~k~i~WkAH----DGiiL~~~W~~~s~lI~s  203 (737)
T KOG1524|consen  152 RWAPNSNSIVFCQ--GGHISIKPLAAN-SKIIRWRAH----DGLVLSLSWSTQSNIIAS  203 (737)
T ss_pred             EECCCCCceEEec--CCeEEEeecccc-cceeEEecc----CcEEEEeecCccccceee
Confidence            6888889999998  778999988742 333333332    123445678888776654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=91.64  E-value=3.4  Score=40.55  Aligned_cols=163  Identities=12%  Similarity=-0.005  Sum_probs=88.3

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCC
Q 008927          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (548)
Q Consensus       193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~  272 (548)
                      +..+.||.|+..|+-.+-++         .+-+-.+.+|+.  .+.......++....+++||.+|.-.+.+        
T Consensus       309 vt~l~FSrD~SqiLS~sfD~---------tvRiHGlKSGK~--LKEfrGHsSyvn~a~ft~dG~~iisaSsD--------  369 (508)
T KOG0275|consen  309 VTCLSFSRDNSQILSASFDQ---------TVRIHGLKSGKC--LKEFRGHSSYVNEATFTDDGHHIISASSD--------  369 (508)
T ss_pred             eeEEEEccCcchhhcccccc---------eEEEeccccchh--HHHhcCccccccceEEcCCCCeEEEecCC--------
Confidence            45567899998876643332         233445666651  22222233456677899999998743321        


Q ss_pred             ceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCc
Q 008927          273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPL  351 (548)
Q Consensus       273 ~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~  351 (548)
                      ..+-+.+..++.-+...+. .+.  +  ..+.....-|..- -+++.++ ++  .+|.++..+.-++.......+-+  .
T Consensus       370 gtvkvW~~KtteC~~Tfk~-~~~--d--~~vnsv~~~PKnpeh~iVCNr-sn--tv~imn~qGQvVrsfsSGkREgG--d  439 (508)
T KOG0275|consen  370 GTVKVWHGKTTECLSTFKP-LGT--D--YPVNSVILLPKNPEHFIVCNR-SN--TVYIMNMQGQVVRSFSSGKREGG--D  439 (508)
T ss_pred             ccEEEecCcchhhhhhccC-CCC--c--ccceeEEEcCCCCceEEEEcC-CC--eEEEEeccceEEeeeccCCccCC--c
Confidence            2344444442111111111 111  2  4556666667665 6677777 43  58888885544555554433222  1


Q ss_pred             ccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE
Q 008927          352 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS  394 (548)
Q Consensus       352 w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~  394 (548)
                      ++.    -..+|   .|++||+..+   ...||.+...+|+++
T Consensus       440 Fi~----~~lSp---kGewiYcigE---D~vlYCF~~~sG~LE  472 (508)
T KOG0275|consen  440 FIN----AILSP---KGEWIYCIGE---DGVLYCFSVLSGKLE  472 (508)
T ss_pred             eEE----EEecC---CCcEEEEEcc---CcEEEEEEeecCcee
Confidence            111    12333   7888887653   346788887788765

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=91.61  E-value=5.4  Score=41.38  Aligned_cols=151  Identities=8%  Similarity=0.005  Sum_probs=87.6

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      .|.|....|+-+..-|+.|++.++-.   .-+.|+...+ ...-+.+..|+++|..++..+-|         ..|-.+|+
T Consensus       221 ~~fp~~~hLlLS~gmD~~vklW~vy~---~~~~lrtf~g-H~k~Vrd~~~s~~g~~fLS~sfD---------~~lKlwDt  287 (503)
T KOG0282|consen  221 QWFPKKGHLLLSGGMDGLVKLWNVYD---DRRCLRTFKG-HRKPVRDASFNNCGTSFLSASFD---------RFLKLWDT  287 (503)
T ss_pred             hhccceeeEEEecCCCceEEEEEEec---Ccceehhhhc-chhhhhhhhccccCCeeeeeecc---------eeeeeecc
Confidence            35665567777766677777766643   2233433211 11235577899999997766443         36778899


Q ss_pred             CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      ++|+.  ...+..+ ....-..+.||+..++++...       ..+|...|+.. |++..  .....-    .++....|
T Consensus       288 ETG~~--~~~f~~~-~~~~cvkf~pd~~n~fl~G~s-------d~ki~~wDiRs-~kvvq--eYd~hL----g~i~~i~F  350 (503)
T KOG0282|consen  288 ETGQV--LSRFHLD-KVPTCVKFHPDNQNIFLVGGS-------DKKIRQWDIRS-GKVVQ--EYDRHL----GAILDITF  350 (503)
T ss_pred             ccceE--EEEEecC-CCceeeecCCCCCcEEEEecC-------CCcEEEEeccc-hHHHH--HHHhhh----hheeeeEE
Confidence            99972  2223322 223344688999777665422       45788888874 54211  111111    45667889


Q ss_pred             CcCCc-EEEEEeCCCCeeeEEEEe
Q 008927          309 SSKGE-LFFVTDRKNGFWNLHKWI  331 (548)
Q Consensus       309 spDG~-L~~~sd~~~g~~~Ly~~d  331 (548)
                      -++|+ ++-.+|.  +...||-+.
T Consensus       351 ~~~g~rFissSDd--ks~riWe~~  372 (503)
T KOG0282|consen  351 VDEGRRFISSSDD--KSVRIWENR  372 (503)
T ss_pred             ccCCceEeeeccC--ccEEEEEcC
Confidence            99998 5545554  444555443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.60  E-value=5.6  Score=40.46  Aligned_cols=160  Identities=12%  Similarity=-0.006  Sum_probs=93.4

Q ss_pred             CCCCcCCHHHHhcCCCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEE
Q 008927           74 SWKSPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI  152 (548)
Q Consensus        74 ~w~spit~~~l~~~~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~  152 (548)
                      .|++-.++-...+....+.++.+|| |+.++++..     ....+|....+  .....+||.+.+.+     |..-+|..
T Consensus       172 ~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~-----d~~~VW~~~~g--~~~a~~t~~~k~~~-----~~~cRF~~  239 (398)
T KOG0771|consen  172 EWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA-----DSARVWSVNTG--AALARKTPFSKDEM-----FSSCRFSV  239 (398)
T ss_pred             ecCcchhhhhhHhhcCccccceeCCCCcEEEEecC-----CceEEEEeccC--chhhhcCCcccchh-----hhhceecc
Confidence            5889888888877778999999999 999999862     13456766443  34566666432221     22224555


Q ss_pred             EC---CEEEEEeCC-CC--eEEEEeCCCCCC---CceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 008927          153 FG---DTVIFSNYK-DQ--RLYKHSIDSKDS---SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (548)
Q Consensus       153 ~~---~~i~F~~~~-~~--~Ly~~~~~~~~~---~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l  223 (548)
                      |+   ...+|.... .+  .+|.+.+..+ +   ..++.+..    ...+..+..|+||+.++.-..+         +++
T Consensus       240 d~~~~~l~laa~~~~~~~v~~~~~~~w~~-~~~l~~~~~~~~----~~siSsl~VS~dGkf~AlGT~d---------GsV  305 (398)
T KOG0771|consen  240 DNAQETLRLAASQFPGGGVRLCDISLWSG-SNFLRLRKKIKR----FKSISSLAVSDDGKFLALGTMD---------GSV  305 (398)
T ss_pred             cCCCceEEEEEecCCCCceeEEEeeeecc-ccccchhhhhhc----cCcceeEEEcCCCcEEEEeccC---------CcE
Confidence            54   223333322 22  3344433321 1   22222222    1246778899999987664221         357


Q ss_pred             EEEECCCCCccCcEEeeec--CCceeeeEECCCCCEEEEEE
Q 008927          224 VAIALNGQNIQEPKVLVSG--SDFYAFPRMDPRGERMAWIE  262 (548)
Q Consensus       224 ~~idl~~g~~~~~~~L~~~--~~~~~~p~~SPDGk~La~~~  262 (548)
                      -+++..+=+   .-++...  ..++....||||.++++=++
T Consensus       306 ai~~~~~lq---~~~~vk~aH~~~VT~ltF~Pdsr~~~svS  343 (398)
T KOG0771|consen  306 AIYDAKSLQ---RLQYVKEAHLGFVTGLTFSPDSRYLASVS  343 (398)
T ss_pred             EEEEeceee---eeEeehhhheeeeeeEEEcCCcCcccccc
Confidence            777766544   2233221  23578889999999887554

>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]

Probab=91.57  E-value=0.66  Score=43.18  Aligned_cols=62  Identities=23%  Similarity=0.209  Sum_probs=46.6

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccCh--HHHHHHhcCcEEEEeCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL--SIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~--~~Q~~asrGyaVl~~NyRG  534 (548)
                      +-|.++..++ |..++++|++.-         ....|++++.|+--..   .+...  -.-++.+.+..|+.+.|||
T Consensus        53 pye~i~l~T~-D~vtL~a~~~~~---------E~S~pTlLyfh~NAGN---mGhr~~i~~~fy~~l~mnv~ivsYRG  116 (300)
T KOG4391|consen   53 PYERIELRTR-DKVTLDAYLMLS---------ESSRPTLLYFHANAGN---MGHRLPIARVFYVNLKMNVLIVSYRG  116 (300)
T ss_pred             CceEEEEEcC-cceeEeeeeecc---------cCCCceEEEEccCCCc---ccchhhHHHHHHHHcCceEEEEEeec
Confidence            3477889998 999999999982         1256999999986322   12222  2246889999999999997

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=91.52  E-value=14  Score=36.69  Aligned_cols=97  Identities=12%  Similarity=-0.112  Sum_probs=51.5

Q ss_pred             EEEEEECCCCCccCcEEeeecCC---c---eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeee-EEEcC
Q 008927          222 EIVAIALNGQNIQEPKVLVSGSD---F---YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR-VCVAG  294 (548)
Q Consensus       222 ~l~~idl~~g~~~~~~~L~~~~~---~---~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~-~~l~~  294 (548)
                      -|.++|.-+|+   .+.-...-+   -   .-...|||||.+|. ..        .+.-|.+++....|..-+. ..++.
T Consensus       134 PIh~wdaftG~---lraSy~~ydh~de~taAhsL~Fs~DGeqlf-aG--------ykrcirvFdt~RpGr~c~vy~t~~~  201 (406)
T KOG2919|consen  134 PIHLWDAFTGK---LRASYRAYDHQDEYTAAHSLQFSPDGEQLF-AG--------YKRCIRVFDTSRPGRDCPVYTTVTK  201 (406)
T ss_pred             ceeeeeccccc---cccchhhhhhHHhhhhheeEEecCCCCeEe-ec--------ccceEEEeeccCCCCCCcchhhhhc
Confidence            47788888887   444332211   1   13568999999985 43        1456888888655641111 12222


Q ss_pred             CCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEe
Q 008927          295 FDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWI  331 (548)
Q Consensus       295 ~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d  331 (548)
                      +..+....+..++++|-.. .+.+..- .....||..+
T Consensus       202 ~k~gq~giisc~a~sP~~~~~~a~gsY-~q~~giy~~~  238 (406)
T KOG2919|consen  202 GKFGQKGIISCFAFSPMDSKTLAVGSY-GQRVGIYNDD  238 (406)
T ss_pred             ccccccceeeeeeccCCCCcceeeecc-cceeeeEecC
Confidence            1101113456678888654 5544333 2234465543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=91.50  E-value=14  Score=35.70  Aligned_cols=139  Identities=11%  Similarity=0.021  Sum_probs=75.9

Q ss_pred             eEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc---eee-eEEEcCCC
Q 008927          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD---VYK-RVCVAGFD  296 (548)
Q Consensus       221 ~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~---~~~-~~~l~~~~  296 (548)
                      +.+-++|+++|+   ......-+..+....||++|..+++...+  .|. ....|.+.++..+..   -.+ ...+...+
T Consensus        74 ~t~kLWDv~tGk---~la~~k~~~~Vk~~~F~~~gn~~l~~tD~--~mg-~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~  147 (327)
T KOG0643|consen   74 QTAKLWDVETGK---QLATWKTNSPVKRVDFSFGGNLILASTDK--QMG-YTCFVSVFDIRDDSSDIDSEEPYLKIPTPD  147 (327)
T ss_pred             ceeEEEEcCCCc---EEEEeecCCeeEEEeeccCCcEEEEEehh--hcC-cceEEEEEEccCChhhhcccCceEEecCCc
Confidence            456777999997   33333333335556789999988877622  232 235688888763221   011 23333322


Q ss_pred             CCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCee-EeecccccccCCCcccccCcceeeeeecCCCCEEEEEE
Q 008927          297 PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY  375 (548)
Q Consensus       297 ~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~-~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~  375 (548)
                          ..+....|+|-|+.++.... .|  .|-.+|+.+|+. .....   +..     ...+...++    .++..+.+.
T Consensus       148 ----skit~a~Wg~l~~~ii~Ghe-~G--~is~~da~~g~~~v~s~~---~h~-----~~Ind~q~s----~d~T~FiT~  208 (327)
T KOG0643|consen  148 ----SKITSALWGPLGETIIAGHE-DG--SISIYDARTGKELVDSDE---EHS-----SKINDLQFS----RDRTYFITG  208 (327)
T ss_pred             ----cceeeeeecccCCEEEEecC-CC--cEEEEEcccCceeeechh---hhc-----ccccccccc----CCcceEEec
Confidence                34677899999994444443 44  466677777642 21111   111     122334454    345566666


Q ss_pred             EeCCeEEEE
Q 008927          376 RQNGRSYLG  384 (548)
Q Consensus       376 ~~~g~~~L~  384 (548)
                      ..+....|+
T Consensus       209 s~Dttakl~  217 (327)
T KOG0643|consen  209 SKDTTAKLV  217 (327)
T ss_pred             ccCccceee
Confidence            666666554

>PLN02211 methyl indole-3-acetate methyltransferase

Probab=91.44  E-value=0.24  Score=48.88  Aligned_cols=42  Identities=14%  Similarity=0.162  Sum_probs=33.3

Q ss_pred             CCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       493 ~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      +..|.||++||..+..  ..|....+.|.++||.|+.+++||..
T Consensus        16 ~~~p~vvliHG~~~~~--~~w~~~~~~L~~~g~~vi~~dl~g~G   57 (273)
T PLN02211         16 RQPPHFVLIHGISGGS--WCWYKIRCLMENSGYKVTCIDLKSAG   57 (273)
T ss_pred             CCCCeEEEECCCCCCc--CcHHHHHHHHHhCCCEEEEecccCCC
Confidence            3458999999976544  35666778899999999999999753

>PF10503 Esterase_phd: Esterase PHB depolymerase

Probab=91.38  E-value=0.21  Score=47.45  Aligned_cols=51  Identities=22%  Similarity=0.216  Sum_probs=31.9

Q ss_pred             EEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHH-hcCcEEEEeCC
Q 008927          477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT-SRGWAFVDVNY  532 (548)
Q Consensus       477 g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~a-srGyaVl~~Ny  532 (548)
                      -.||.|.+  .   +..++||||..||.-.......-...+..+| .+||+|++|+-
T Consensus         3 Y~lYvP~~--~---~~~~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~   54 (220)
T PF10503_consen    3 YRLYVPPG--A---PRGPVPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQ   54 (220)
T ss_pred             EEEecCCC--C---CCCCCCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccc
Confidence            35788854  2   1347899999999855432111112234466 46999999984

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=91.38  E-value=1  Score=49.44  Aligned_cols=60  Identities=15%  Similarity=0.086  Sum_probs=43.0

Q ss_pred             ceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEE
Q 008927          191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE  262 (548)
Q Consensus       191 ~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~  262 (548)
                      -++.++.|||||+||+..+-|         ..|.++|+.++.   ..-...-+.-..+..+||+|..||-+.
T Consensus       577 nritd~~FS~DgrWlisasmD---------~tIr~wDlpt~~---lID~~~vd~~~~sls~SPngD~LAT~H  636 (910)
T KOG1539|consen  577 NRITDMTFSPDGRWLISASMD---------STIRTWDLPTGT---LIDGLLVDSPCTSLSFSPNGDFLATVH  636 (910)
T ss_pred             cceeeeEeCCCCcEEEEeecC---------CcEEEEeccCcc---eeeeEecCCcceeeEECCCCCEEEEEE
Confidence            478899999999999876443         468899999986   222111122345668999999999554

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=91.11  E-value=15  Score=35.21  Aligned_cols=133  Identities=11%  Similarity=0.071  Sum_probs=76.0

Q ss_pred             EEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCccc
Q 008927          222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE  301 (548)
Q Consensus       222 ~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~  301 (548)
                      .+-++|..+|..  .+.|. .+..+....+|+||+.|. ++.        ++.+-..|.+.-+.++      ..++.  .
T Consensus       166 tVRLWD~rTgt~--v~sL~-~~s~VtSlEvs~dG~ilT-ia~--------gssV~Fwdaksf~~lK------s~k~P--~  225 (334)
T KOG0278|consen  166 TVRLWDHRTGTE--VQSLE-FNSPVTSLEVSQDGRILT-IAY--------GSSVKFWDAKSFGLLK------SYKMP--C  225 (334)
T ss_pred             ceEEEEeccCcE--EEEEe-cCCCCcceeeccCCCEEE-Eec--------CceeEEecccccccee------eccCc--c
Confidence            466779999872  33343 333456678999999775 441        3456566655433221      11101  3


Q ss_pred             CCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeE
Q 008927          302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS  381 (548)
Q Consensus       302 ~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~  381 (548)
                      .+.....+|+-.+++.-..   -..+|++|-.+|+..... ....++ |..     ...|+|    ++.+|.+-.++|.-
T Consensus       226 nV~SASL~P~k~~fVaGge---d~~~~kfDy~TgeEi~~~-nkgh~g-pVh-----cVrFSP----dGE~yAsGSEDGTi  291 (334)
T KOG0278|consen  226 NVESASLHPKKEFFVAGGE---DFKVYKFDYNTGEEIGSY-NKGHFG-PVH-----CVRFSP----DGELYASGSEDGTI  291 (334)
T ss_pred             ccccccccCCCceEEecCc---ceEEEEEeccCCceeeec-ccCCCC-ceE-----EEEECC----CCceeeccCCCceE
Confidence            4566677888655444322   245888898888765553 111222 221     234553    56677777788888


Q ss_pred             EEEEEEC
Q 008927          382 YLGILDD  388 (548)
Q Consensus       382 ~L~~~dl  388 (548)
                      +||...+
T Consensus       292 rlWQt~~  298 (334)
T KOG0278|consen  292 RLWQTTP  298 (334)
T ss_pred             EEEEecC
Confidence            8887654

>PRK13615 lipoprotein LpqB; Provisional

Probab=91.04  E-value=24  Score=38.51  Aligned_cols=163  Identities=9%  Similarity=-0.043  Sum_probs=86.9

Q ss_pred             cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCc
Q 008927          194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA  273 (548)
Q Consensus       194 ~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~  273 (548)
                      ..+..|+||+.++++..+         ..|++-... +.   .+.+..+. ....|.|+++| + +|+..+.       .
T Consensus       337 ~s~avS~dg~~~A~v~~~---------~~l~vg~~~-~~---~~~~~~~~-~Lt~PS~d~~g-~-vWtv~~g-------~  393 (557)
T PRK13615        337 DAATLSADGRQAAVRNAS---------GVWSVGDGD-RD---AVLLDTRP-GLVAPSLDAQG-Y-VWSTPAS-------D  393 (557)
T ss_pred             ccceEcCCCceEEEEcCC---------ceEEEecCC-Cc---ceeeccCC-ccccCcCcCCC-C-EEEEeCC-------C
Confidence            467899999999998221         245544433 34   45555443 46789999999 3 4665321       1


Q ss_pred             eEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEE--EeccCCeeEee-cccccccCC
Q 008927          274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHK--WIESNNEVLAI-YSLDAEFSR  349 (548)
Q Consensus       274 ~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~--~d~~~g~~~~l-~~~~~d~~~  349 (548)
                      ...+.....+|+.... .+.... +  ..+..++-|+||- ++++.+. .|..+|++  +-..++..+.| +.. .... 
T Consensus       394 ~~~l~~~~~~G~~~~v-~v~~~~-~--~~I~~lrvSrDG~R~Avi~~~-~g~~~V~va~V~R~~~~P~~L~~~p-~~l~-  466 (557)
T PRK13615        394 PRGLVAWGPDGVGHPV-AVSWTA-T--GRVVSLEVARDGARVLVQLET-GAGPQLLVASIVRDGGVPTSLTTTP-LELL-  466 (557)
T ss_pred             ceEEEEecCCCceEEe-eccccC-C--CeeEEEEeCCCccEEEEEEec-CCCCEEEEEEEEeCCCcceEeeecc-EEcc-
Confidence            2233333334542211 111111 2  4588899999998 8888765 44445554  32234434455 311 0000 


Q ss_pred             CcccccCcceeeeeecCCCCEEEEEEE-eCCeEEEEEEECCCC
Q 008927          350 PLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGH  391 (548)
Q Consensus       350 p~w~~~~~~~~~~~~~~d~~~l~~~~~-~~g~~~L~~~dl~~g  391 (548)
                      +.- -......|.    ++..|+.... .++..+++++.+.+.
T Consensus       467 ~~l-~~v~sl~W~----~~~~laVl~~~~~~~~~v~~v~v~g~  504 (557)
T PRK13615        467 ASP-GTPLDATWV----DELDVATLTLAPDGERQVELHQVGGP  504 (557)
T ss_pred             cCc-CcceeeEEc----CCCEEEEEeccCCCCceEEEEECCCc
Confidence            000 012234566    5667766653 345567788887643

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=90.97  E-value=4.3  Score=42.73  Aligned_cols=95  Identities=13%  Similarity=0.177  Sum_probs=56.3

Q ss_pred             eCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee
Q 008927          161 NYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV  240 (548)
Q Consensus       161 ~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~  240 (548)
                      ...||++..++-.+  .-.+-+...    ........|+|||.-|+-+-||.         .|-.+. .+|-.  +..|.
T Consensus        81 ~s~DGkf~il~k~~--rVE~sv~AH----~~A~~~gRW~~dGtgLlt~GEDG---------~iKiWS-rsGML--RStl~  142 (737)
T KOG1524|consen   81 CSNDGRFVILNKSA--RVERSISAH----AAAISSGRWSPDGAGLLTAGEDG---------VIKIWS-RSGML--RSTVV  142 (737)
T ss_pred             EcCCceEEEecccc--hhhhhhhhh----hhhhhhcccCCCCceeeeecCCc---------eEEEEe-ccchH--HHHHh
Confidence            33577888887664  323334332    12234557999999988765542         233333 33421  23455


Q ss_pred             ecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC
Q 008927          241 SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE  282 (548)
Q Consensus       241 ~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~  282 (548)
                      +....+...+|.||...++|..         +.++++-++..
T Consensus       143 Q~~~~v~c~~W~p~S~~vl~c~---------g~h~~IKpL~~  175 (737)
T KOG1524|consen  143 QNEESIRCARWAPNSNSIVFCQ---------GGHISIKPLAA  175 (737)
T ss_pred             hcCceeEEEEECCCCCceEEec---------CCeEEEeeccc
Confidence            5544555679999999999986         34566666653

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=90.96  E-value=8.8  Score=38.60  Aligned_cols=138  Identities=7%  Similarity=0.038  Sum_probs=72.4

Q ss_pred             EEEEEECCCCCccCcEEeee---cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCC
Q 008927          222 EIVAIALNGQNIQEPKVLVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT  298 (548)
Q Consensus       222 ~l~~idl~~g~~~~~~~L~~---~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~  298 (548)
                      +||+.|+..=+.  ...|..   ..........++++.+|||=...      +..+++++|+..-   .....+...+  
T Consensus       107 ~IyIydI~~Mkl--LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~------t~GdV~l~d~~nl---~~v~~I~aH~--  173 (391)
T KOG2110|consen  107 SIYIYDIKDMKL--LHTIETTPPNPKGLCALSPNNANCYLAYPGST------TSGDVVLFDTINL---QPVNTINAHK--  173 (391)
T ss_pred             cEEEEeccccee--ehhhhccCCCccceEeeccCCCCceEEecCCC------CCceEEEEEcccc---eeeeEEEecC--
Confidence            599999987431  111211   11123444555666788875311      3578999998642   2333444433  


Q ss_pred             cccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCe-eEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEE
Q 008927          299 IVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR  376 (548)
Q Consensus       299 ~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~-~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~  376 (548)
                        ..+..++|++||. |+-.+++ .---++|  ...+|+ ..+.-.+-    .+.   ...+.+|.+   ++..| ....
T Consensus       174 --~~lAalafs~~G~llATASeK-GTVIRVf--~v~~G~kl~eFRRG~----~~~---~IySL~Fs~---ds~~L-~~sS  237 (391)
T KOG2110|consen  174 --GPLAALAFSPDGTLLATASEK-GTVIRVF--SVPEGQKLYEFRRGT----YPV---SIYSLSFSP---DSQFL-AASS  237 (391)
T ss_pred             --CceeEEEECCCCCEEEEeccC-ceEEEEE--EcCCccEeeeeeCCc----eee---EEEEEEECC---CCCeE-EEec
Confidence              5677889999999 5555666 2222333  333443 22221110    011   112245654   55544 4444


Q ss_pred             eCCeEEEEEEEC
Q 008927          377 QNGRSYLGILDD  388 (548)
Q Consensus       377 ~~g~~~L~~~dl  388 (548)
                      ..+.-|++.++.
T Consensus       238 ~TeTVHiFKL~~  249 (391)
T KOG2110|consen  238 NTETVHIFKLEK  249 (391)
T ss_pred             CCCeEEEEEecc
Confidence            557778887764

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=90.83  E-value=1.7  Score=34.82  Aligned_cols=65  Identities=15%  Similarity=0.084  Sum_probs=41.4

Q ss_pred             ceeeCCCCCEEEEEEeccC-C-C-------CCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEE
Q 008927          195 DGIFDPRFNRYVTVREDRR-Q-D-------ALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE  262 (548)
Q Consensus       195 ~~~~SpDG~~i~~v~~~~~-~-~-------~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~  262 (548)
                      ++.+++++..|+|...... + .       ......+|+.+|..+++   .++|..+-.|-...++|||++.|++..
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~---~~vl~~~L~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKE---TTVLLDGLYFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTE---EEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCe---EEEehhCCCccCeEEEcCCCCEEEEEe
Confidence            3567778666777632211 0 0       02245799999999998   888888766667779999999988665

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG2267 PldB Lysophospholipase [Lipid metabolism]

Probab=90.75  E-value=0.45  Score=47.66  Aligned_cols=64  Identities=14%  Similarity=0.149  Sum_probs=47.1

Q ss_pred             EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCC
Q 008927          464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGL  538 (548)
Q Consensus       464 i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGy  538 (548)
                      -.|.+. ||..+....+.+.+        .+.-+||.+||.=..  ..-|...++.|+++||.|+..|-||=..-
T Consensus        12 ~~~~~~-d~~~~~~~~~~~~~--------~~~g~Vvl~HG~~Eh--~~ry~~la~~l~~~G~~V~~~D~RGhG~S   75 (298)
T COG2267          12 GYFTGA-DGTRLRYRTWAAPE--------PPKGVVVLVHGLGEH--SGRYEELADDLAARGFDVYALDLRGHGRS   75 (298)
T ss_pred             ceeecC-CCceEEEEeecCCC--------CCCcEEEEecCchHH--HHHHHHHHHHHHhCCCEEEEecCCCCCCC
Confidence            456675 99999998888742        122899999998322  12344568899999999999999985443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=90.51  E-value=7  Score=42.43  Aligned_cols=122  Identities=11%  Similarity=0.038  Sum_probs=65.1

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCC
Q 008927          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (548)
Q Consensus       192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~  271 (548)
                      .+..+..||+|+.|+-.+....    ....-|++++..+-..  ...|....--+....|||||++|+=++.++      
T Consensus       527 Ev~~l~~s~~gnliASaCKS~~----~ehAvI~lw~t~~W~~--~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR------  594 (764)
T KOG1063|consen  527 EVYALAISPTGNLIASACKSSL----KEHAVIRLWNTANWLQ--VQELEGHSLTVTRLAFSPDGRYLLSVSRDR------  594 (764)
T ss_pred             eEEEEEecCCCCEEeehhhhCC----ccceEEEEEeccchhh--hheecccceEEEEEEECCCCcEEEEeecCc------
Confidence            3446778899887765443221    1235677777766431  233443333367889999999998676443      


Q ss_pred             CceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEe
Q 008927          272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWI  331 (548)
Q Consensus       272 ~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d  331 (548)
                      .-.||-.--+...+. +..++....    .-+-...|+||++.++.+.| +-.--+|...
T Consensus       595 t~sl~~~~~~~~~e~-~fa~~k~Ht----RIIWdcsW~pde~~FaTaSR-DK~VkVW~~~  648 (764)
T KOG1063|consen  595 TVSLYEVQEDIKDEF-RFACLKAHT----RIIWDCSWSPDEKYFATASR-DKKVKVWEEP  648 (764)
T ss_pred             eEEeeeeecccchhh-hhccccccc----eEEEEcccCcccceeEEecC-CceEEEEecc
Confidence            223444311101111 011111111    23456789999875555555 5555556554

>PRK05855 short chain dehydrogenase; Validated

Probab=90.50  E-value=0.54  Score=51.64  Aligned_cols=52  Identities=17%  Similarity=0.296  Sum_probs=39.1

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ||.+++.+.+-+          ..-|.||++||.+....  .|....+.| ++||.|+.+|+||-
T Consensus        11 ~g~~l~~~~~g~----------~~~~~ivllHG~~~~~~--~w~~~~~~L-~~~~~Vi~~D~~G~   62 (582)
T PRK05855         11 DGVRLAVYEWGD----------PDRPTVVLVHGYPDNHE--VWDGVAPLL-ADRFRVVAYDVRGA   62 (582)
T ss_pred             CCEEEEEEEcCC----------CCCCeEEEEcCCCchHH--HHHHHHHHh-hcceEEEEecCCCC
Confidence            898998776532          12378999999986553  355666777 78999999999984

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.30  E-value=3.5  Score=47.01  Aligned_cols=258  Identities=12%  Similarity=0.152  Sum_probs=128.2

Q ss_pred             CccCceEEcC-CCcEE-EEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCe
Q 008927           89 KRLGGTAVDG-HGRLI-WLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR  166 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~-~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~  166 (548)
                      -++..+.|++ |++-- -+.+ .-|+|...||-....-.+....+...--.....|   -|-.|.+..+-++-+...++.
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaG-G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V---~gLDfN~~q~nlLASGa~~ge  140 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAG-GLEDGNIVLYDPASIIANASEEVLATKSKHTGPV---LGLDFNPFQGNLLASGADDGE  140 (1049)
T ss_pred             ccceeeeecccCCCccceeec-cccCCceEEecchhhccCcchHHHhhhcccCCce---eeeeccccCCceeeccCCCCc
Confidence            4566777777 66521 0111 2356777777554310012333322100000111   012455555545555556788


Q ss_pred             EEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC--C
Q 008927          167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS--D  244 (548)
Q Consensus       167 Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~--~  244 (548)
                      ||+=|+..   -.++.+...-.....+..++|...-++|++...        ......++|++..+.  ...+....  .
T Consensus       141 I~iWDlnn---~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s--------~sg~~~iWDlr~~~p--ii~ls~~~~~~  207 (1049)
T KOG0307|consen  141 ILIWDLNK---PETPFTPGSQAPPSEIKCLSWNRKVSHILASGS--------PSGRAVIWDLRKKKP--IIKLSDTPGRM  207 (1049)
T ss_pred             EEEeccCC---cCCCCCCCCCCCcccceEeccchhhhHHhhccC--------CCCCceeccccCCCc--ccccccCCCcc
Confidence            99888863   223444321001122344556655556555321        123567778877651  22233222  2


Q ss_pred             ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCC
Q 008927          245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG  323 (548)
Q Consensus       245 ~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g  323 (548)
                      ..+...|.||+..-++++.+....    .-|-+-|+.-.-.  ..+.+.+..    ..+....|.+.+. +++.+-+ ++
T Consensus       208 ~~S~l~WhP~~aTql~~As~dd~~----PviqlWDlR~ass--P~k~~~~H~----~GilslsWc~~D~~lllSsgk-D~  276 (1049)
T KOG0307|consen  208 HCSVLAWHPDHATQLLVASGDDSA----PVIQLWDLRFASS--PLKILEGHQ----RGILSLSWCPQDPRLLLSSGK-DN  276 (1049)
T ss_pred             ceeeeeeCCCCceeeeeecCCCCC----ceeEeecccccCC--chhhhcccc----cceeeeccCCCCchhhhcccC-CC
Confidence            356778999988555566443322    2233334331111  234444443    4577889999886 7766655 43


Q ss_pred             eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927          324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (548)
Q Consensus       324 ~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d  387 (548)
                        +++.++.++||+.--.+.     .-.|.+..   .|.|   ..-.++..+.-+|.-.||.+-
T Consensus       277 --~ii~wN~~tgEvl~~~p~-----~~nW~fdv---~w~p---r~P~~~A~asfdgkI~I~sl~  327 (1049)
T KOG0307|consen  277 --RIICWNPNTGEVLGELPA-----QGNWCFDV---QWCP---RNPSVMAAASFDGKISIYSLQ  327 (1049)
T ss_pred             --CeeEecCCCceEeeecCC-----CCcceeee---eecC---CCcchhhhheeccceeeeeee
Confidence              688889888876432221     23566543   3443   222244444556777776553

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=90.28  E-value=24  Score=36.36  Aligned_cols=181  Identities=14%  Similarity=0.127  Sum_probs=93.4

Q ss_pred             eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee-cCC
Q 008927          166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSD  244 (548)
Q Consensus       166 ~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~-~~~  244 (548)
                      ++|.....   .++..+-+..    ..+......|.|+.++..+.+         ....--|+.+|..  ..++.. ..+
T Consensus       286 ~vws~~~~---s~~~~~~~h~----~~V~~ls~h~tgeYllsAs~d---------~~w~Fsd~~~g~~--lt~vs~~~s~  347 (506)
T KOG0289|consen  286 RVWSVPLS---SEPTSSRPHE----EPVTGLSLHPTGEYLLSASND---------GTWAFSDISSGSQ--LTVVSDETSD  347 (506)
T ss_pred             Eeeccccc---cCcccccccc----ccceeeeeccCCcEEEEecCC---------ceEEEEEccCCcE--EEEEeecccc
Confidence            44554443   3444444432    123445677888876654222         2333446666641  222222 122


Q ss_pred             -ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCC
Q 008927          245 -FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN  322 (548)
Q Consensus       245 -~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~  322 (548)
                       -+....|.|||-  .|... .+     .+.|-+.|+.. +.  +...+.+..    ..+....|+.+|- |+..+|.  
T Consensus       348 v~~ts~~fHpDgL--ifgtg-t~-----d~~vkiwdlks-~~--~~a~Fpght----~~vk~i~FsENGY~Lat~add--  410 (506)
T KOG0289|consen  348 VEYTSAAFHPDGL--IFGTG-TP-----DGVVKIWDLKS-QT--NVAKFPGHT----GPVKAISFSENGYWLATAADD--  410 (506)
T ss_pred             ceeEEeeEcCCce--EEecc-CC-----CceEEEEEcCC-cc--ccccCCCCC----CceeEEEeccCceEEEEEecC--
Confidence             266778999995  44442 22     46788889874 32  233344433    5678889999996 4444444  


Q ss_pred             CeeeEEEEeccCCe-eEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeec
Q 008927          323 GFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD  397 (548)
Q Consensus       323 g~~~Ly~~d~~~g~-~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~  397 (548)
                      +  .+..+|+..-+ .+.+.-.+       . .+...+.+.+   .|..|. .+  +..-++|.++-.+..++.+.
T Consensus       411 ~--~V~lwDLRKl~n~kt~~l~~-------~-~~v~s~~fD~---SGt~L~-~~--g~~l~Vy~~~k~~k~W~~~~  470 (506)
T KOG0289|consen  411 G--SVKLWDLRKLKNFKTIQLDE-------K-KEVNSLSFDQ---SGTYLG-IA--GSDLQVYICKKKTKSWTEIK  470 (506)
T ss_pred             C--eEEEEEehhhcccceeeccc-------c-ccceeEEEcC---CCCeEE-ee--cceeEEEEEecccccceeee
Confidence            3  26667763221 12222111       0 1233455542   344443 33  44567888877677776553

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=90.28  E-value=5.2  Score=40.67  Aligned_cols=189  Identities=11%  Similarity=-0.010  Sum_probs=109.3

Q ss_pred             CccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEE
Q 008927           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY  168 (548)
Q Consensus        89 ~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly  168 (548)
                      -.++++++||.+..|...+   ++|+..||-....  .+.+.|...++.+++-       .|-|.. .++++..+++-+-
T Consensus       181 eaIRdlafSpnDskF~t~S---dDg~ikiWdf~~~--kee~vL~GHgwdVksv-------dWHP~k-gLiasgskDnlVK  247 (464)
T KOG0284|consen  181 EAIRDLAFSPNDSKFLTCS---DDGTIKIWDFRMP--KEERVLRGHGWDVKSV-------DWHPTK-GLIASGSKDNLVK  247 (464)
T ss_pred             hhhheeccCCCCceeEEec---CCCeEEEEeccCC--chhheeccCCCCccee-------ccCCcc-ceeEEccCCceeE
Confidence            4688899998555544432   4688888865443  3678888888888754       455543 3666665666555


Q ss_pred             EEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceee
Q 008927          169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAF  248 (548)
Q Consensus       169 ~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~  248 (548)
                      ..|..++ ...-.|-..    .-.+....|+|+|.+|+..++|+         .+-++|+.+-+.  ........+++..
T Consensus       248 lWDprSg-~cl~tlh~H----KntVl~~~f~~n~N~Llt~skD~---------~~kv~DiR~mkE--l~~~r~Hkkdv~~  311 (464)
T KOG0284|consen  248 LWDPRSG-SCLATLHGH----KNTVLAVKFNPNGNWLLTGSKDQ---------SCKVFDIRTMKE--LFTYRGHKKDVTS  311 (464)
T ss_pred             eecCCCc-chhhhhhhc----cceEEEEEEcCCCCeeEEccCCc---------eEEEEehhHhHH--HHHhhcchhhhee
Confidence            5566541 121222222    23466778999999998876653         577788875331  3333334456777


Q ss_pred             eEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEe
Q 008927          249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD  319 (548)
Q Consensus       249 p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd  319 (548)
                      ..|+|=-.-|. ++-.     |++ .|+...+.....   ...+.... +  ..+.++.|.|=|.|+...+
T Consensus       312 ~~WhP~~~~lf-tsgg-----~Dg-svvh~~v~~~~p---~~~i~~AH-d--~~iwsl~~hPlGhil~tgs  369 (464)
T KOG0284|consen  312 LTWHPLNESLF-TSGG-----SDG-SVVHWVVGLEEP---LGEIPPAH-D--GEIWSLAYHPLGHILATGS  369 (464)
T ss_pred             eccccccccce-eecc-----CCC-ceEEEecccccc---ccCCCccc-c--cceeeeeccccceeEeecC
Confidence            78999777664 3311     222 233333321111   11111111 2  4677889999998766643

>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase

Probab=90.28  E-value=0.27  Score=48.33  Aligned_cols=40  Identities=15%  Similarity=0.188  Sum_probs=28.3

Q ss_pred             cEEEEEccCccccccCc-cChHHHHHHhcCcEEEEeCCCCC
Q 008927          496 PLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       496 Pliv~iHGGP~~~~~~~-~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      |.||++||.+.....+. +...+..++..||.|+.+|+||.
T Consensus        31 ~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~   71 (282)
T TIGR03343        31 EAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGF   71 (282)
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCC
Confidence            56899999765443221 22334567788999999999984

Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.

>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3

Probab=90.26  E-value=0.28  Score=47.04  Aligned_cols=53  Identities=15%  Similarity=0.099  Sum_probs=38.3

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      ....++.|..       ...||+|++.||=  ......|+-..|..+|.||+|+.|+.-...
T Consensus        33 kpLlI~tP~~-------~G~yPVilF~HG~--~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~   85 (307)
T PF07224_consen   33 KPLLIVTPSE-------AGTYPVILFLHGF--NLYNSFYSQLLAHIASHGFIVVAPQLYTLF   85 (307)
T ss_pred             CCeEEecCCc-------CCCccEEEEeech--hhhhHHHHHHHHHHhhcCeEEEechhhccc
Confidence            5677888864       4579999999984  122223344568889999999999876543

1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=90.23  E-value=12  Score=38.72  Aligned_cols=95  Identities=12%  Similarity=0.064  Sum_probs=51.8

Q ss_pred             EEEEeCCCCeEEEE-eCCCCC---CCceecCCCCCCC----CceecceeeCCCCCEEEEEEeccC-----------CCCC
Q 008927          157 VIFSNYKDQRLYKH-SIDSKD---SSPLPITPDYGEP----LVSYADGIFDPRFNRYVTVREDRR-----------QDAL  217 (548)
Q Consensus       157 i~F~~~~~~~Ly~~-~~~~~~---~~~~~lT~~~~~~----~~~~~~~~~SpDG~~i~~v~~~~~-----------~~~~  217 (548)
                      |+.++  ..+||++ +.++++   ++.+.|.......    ......+.|.|||. |++......           ....
T Consensus        84 lyV~~--~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~  160 (367)
T TIGR02604        84 VYVAT--PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQ  160 (367)
T ss_pred             EEEeC--CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCccc
Confidence            55554  4468877 444320   1344443321101    01133688999996 444222110           0001


Q ss_pred             CceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCE
Q 008927          218 NSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGER  257 (548)
Q Consensus       218 ~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~  257 (548)
                      .....|++++.++++   .+++..+...-...+|+|+|+.
T Consensus       161 ~~~g~i~r~~pdg~~---~e~~a~G~rnp~Gl~~d~~G~l  197 (367)
T TIGR02604       161 GLGGGLFRYNPDGGK---LRVVAHGFQNPYGHSVDSWGDV  197 (367)
T ss_pred             ccCceEEEEecCCCe---EEEEecCcCCCccceECCCCCE
Confidence            123579999999988   7777766544455689999874

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=90.16  E-value=19  Score=34.87  Aligned_cols=109  Identities=11%  Similarity=0.058  Sum_probs=61.3

Q ss_pred             cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCC----ccC-cEEeeecCCceeeeEECCCCCEEEEEEecCCCC
Q 008927          194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN----IQE-PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM  268 (548)
Q Consensus       194 ~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~----~~~-~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~  268 (548)
                      -...|+++|..++++.++.-.    ....|.++|+....    ..+ ...|.....-.....|+|-|+.|..-   +   
T Consensus        97 k~~~F~~~gn~~l~~tD~~mg----~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G---h---  166 (327)
T KOG0643|consen   97 KRVDFSFGGNLILASTDKQMG----YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG---H---  166 (327)
T ss_pred             EEEeeccCCcEEEEEehhhcC----cceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe---c---
Confidence            345689999998887543211    23566777776321    001 22333333345566899999988642   2   


Q ss_pred             CCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeC
Q 008927          269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR  320 (548)
Q Consensus       269 p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~  320 (548)
                        +...|-.+|+.. |.    ..+.... .....+...++++|...++.+.+
T Consensus       167 --e~G~is~~da~~-g~----~~v~s~~-~h~~~Ind~q~s~d~T~FiT~s~  210 (327)
T KOG0643|consen  167 --EDGSISIYDART-GK----ELVDSDE-EHSSKINDLQFSRDRTYFITGSK  210 (327)
T ss_pred             --CCCcEEEEEccc-Cc----eeeechh-hhccccccccccCCcceEEeccc
Confidence              245688888874 43    1111110 00035778899999865555444

>PLN02894 hydrolase, alpha/beta fold family protein

Probab=89.55  E-value=0.76  Score=48.18  Aligned_cols=41  Identities=22%  Similarity=0.306  Sum_probs=28.9

Q ss_pred             CCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       494 ~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG  537 (548)
                      ..|.||++||.+....  .|...+..|+. +|.|+.+|+||-.+
T Consensus       104 ~~p~vvllHG~~~~~~--~~~~~~~~L~~-~~~vi~~D~rG~G~  144 (402)
T PLN02894        104 DAPTLVMVHGYGASQG--FFFRNFDALAS-RFRVIAIDQLGWGG  144 (402)
T ss_pred             CCCEEEEECCCCcchh--HHHHHHHHHHh-CCEEEEECCCCCCC
Confidence            3488999999876432  23344556654 69999999998643

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=89.48  E-value=7  Score=38.06  Aligned_cols=112  Identities=11%  Similarity=0.178  Sum_probs=66.9

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee----cCCceeeeEECC--CCCEEEEEEecC
Q 008927          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS----GSDFYAFPRMDP--RGERMAWIEWHH  265 (548)
Q Consensus       192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~----~~~~~~~p~~SP--DGk~La~~~~~~  265 (548)
                      ++.-..|-|+++.|+.+.+          +.|.+++++.+......++..    +...+...+|||  ||..++-..   
T Consensus       125 ~i~cvew~Pns~klasm~d----------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~---  191 (370)
T KOG1007|consen  125 KINCVEWEPNSDKLASMDD----------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS---  191 (370)
T ss_pred             ceeeEEEcCCCCeeEEecc----------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC---
Confidence            4555679999999998742          468888888765100122221    122355668999  899988443   


Q ss_pred             CCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEE
Q 008927          266 PNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHK  329 (548)
Q Consensus       266 ~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~  329 (548)
                            .+.|+..|+.+..+   ...+.... +  ..+....|.|+-+ ++..... +|+-+||-
T Consensus       192 ------d~tl~~~D~RT~~~---~~sI~dAH-g--q~vrdlDfNpnkq~~lvt~gD-dgyvriWD  243 (370)
T KOG1007|consen  192 ------DSTLQFWDLRTMKK---NNSIEDAH-G--QRVRDLDFNPNKQHILVTCGD-DGYVRIWD  243 (370)
T ss_pred             ------CCcEEEEEccchhh---hcchhhhh-c--ceeeeccCCCCceEEEEEcCC-CccEEEEe
Confidence                  35688888874322   22232211 1  3456678889887 4444444 66666654

>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional

Probab=89.26  E-value=1.2  Score=50.57  Aligned_cols=23  Identities=35%  Similarity=0.475  Sum_probs=19.4

Q ss_pred             hHHHHHHhcCcEEEEeCCCCCCC
Q 008927          515 LSIQYWTSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       515 ~~~Q~~asrGyaVl~~NyRGStG  537 (548)
                      ...++|+.|||+|+.+|.||..+
T Consensus       270 ~~~~~~~~rGYaVV~~D~RGtg~  292 (767)
T PRK05371        270 SLNDYFLPRGFAVVYVSGIGTRG  292 (767)
T ss_pred             hHHHHHHhCCeEEEEEcCCCCCC
Confidence            34689999999999999998633

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=89.13  E-value=3.5  Score=40.89  Aligned_cols=141  Identities=14%  Similarity=0.098  Sum_probs=73.7

Q ss_pred             CCCCcCCHHHHhcCCCccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCC-----CCCCccccceeeCCe
Q 008927           74 SWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITP-----KEYAVRTTAQEYGGG  148 (548)
Q Consensus        74 ~w~spit~~~l~~~~~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~-----~~~~~r~~v~~ygg~  148 (548)
                      .|+-|+..+........|..+++. ++...|+..-.. .....-|+.....+|-..++..     .+++..      -++
T Consensus       137 ~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~-sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmP------hSP  208 (335)
T TIGR03032       137 LWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQ-SDVADGWREGRRDGGCVIDIPSGEVVASGLSMP------HSP  208 (335)
T ss_pred             ccCCccccccCccCceeecceeee-CCeEEEEEEeec-cCCcccccccccCCeEEEEeCCCCEEEcCccCC------cCC
Confidence            477777666666655778888887 666767642210 0000112221111111111111     111100      001


Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCC-----------CC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-----------AL  217 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~-----------~~  217 (548)
                      .  +.+++|+|++...+.|+.+|+++  |+.+.+...+    .....+.|.  |..++...+..++.           -.
T Consensus       209 R--WhdgrLwvldsgtGev~~vD~~~--G~~e~Va~vp----G~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~  278 (335)
T TIGR03032       209 R--WYQGKLWLLNSGRGELGYVDPQA--GKFQPVAFLP----GFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLD  278 (335)
T ss_pred             c--EeCCeEEEEECCCCEEEEEcCCC--CcEEEEEECC----CCCccccee--CCEEEEEeccccCCCCcCCCchhhhhh
Confidence            1  35678999998889999999986  6666665542    233455566  66543322221110           02


Q ss_pred             CceeEEEEEECCCCC
Q 008927          218 NSTTEIVAIALNGQN  232 (548)
Q Consensus       218 ~~~~~l~~idl~~g~  232 (548)
                      +.+.-|++||+.+|+
T Consensus       279 ~~~CGv~vidl~tG~  293 (335)
T TIGR03032       279 ALGCGVAVIDLNSGD  293 (335)
T ss_pred             hhcccEEEEECCCCC
Confidence            235678899998887

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]

Probab=89.12  E-value=0.67  Score=42.79  Aligned_cols=72  Identities=18%  Similarity=0.200  Sum_probs=46.5

Q ss_pred             CccCCCccCCeEEEeeccCCCe-EEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccCh-HHHHHHhcCcEEEE
Q 008927          452 LKYKSYFSLPELIEFPTEVPGQ-KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWTSRGWAFVD  529 (548)
Q Consensus       452 ~l~~~~~~~pe~i~~~s~~dG~-~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~-~~Q~~asrGyaVl~  529 (548)
                      .|....+.+.|.+.|--  .|. .|.-|.  |.+         .-|+.++||||-+......-.. .......|||+|+.
T Consensus        36 ~Lkn~~i~r~e~l~Yg~--~g~q~VDIwg--~~~---------~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vas  102 (270)
T KOG4627|consen   36 ELKNKQIIRVEHLRYGE--GGRQLVDIWG--STN---------QAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVAS  102 (270)
T ss_pred             HhhhccccchhccccCC--CCceEEEEec--CCC---------CccEEEEEecchhhcCchhcccchhhhhhhcCeEEEE
Confidence            34555666777777743  333 355443  432         3499999999988655443332 34567889999999


Q ss_pred             eCCCCCC
Q 008927          530 VNYGGST  536 (548)
Q Consensus       530 ~NyRGSt  536 (548)
                      +.|-=++
T Consensus       103 vgY~l~~  109 (270)
T KOG4627|consen  103 VGYNLCP  109 (270)
T ss_pred             eccCcCc
Confidence            9885443

>PRK10439 enterobactin/ferric enterobactin esterase; Provisional

Probab=89.07  E-value=1.1  Score=47.03  Aligned_cols=69  Identities=17%  Similarity=0.247  Sum_probs=47.2

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCc----EEEEeCCCCC
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW----AFVDVNYGGS  535 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGy----aVl~~NyRGS  535 (548)
                      .+.++|.|..-|.+...++|.|.+  |+   .+++|+|++.||+.+......+ .....+++.|.    +|+.+|.-.+
T Consensus       180 ~~~~~~~S~~Lg~~r~v~VY~P~~--y~---~~~~PvlyllDG~~w~~~~~~~-~~ld~li~~g~i~P~ivV~id~~~~  252 (411)
T PRK10439        180 AKEIIWKSERLGNSRRVWIYTTGD--AA---PEERPLAILLDGQFWAESMPVW-PALDSLTHRGQLPPAVYLLIDAIDT  252 (411)
T ss_pred             eEEEEEEccccCCceEEEEEECCC--CC---CCCCCEEEEEECHHhhhcCCHH-HHHHHHHHcCCCCceEEEEECCCCc
Confidence            356777775357778999999964  53   3689999999999876543322 33456777784    4688886433

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=89.05  E-value=2.9  Score=43.27  Aligned_cols=117  Identities=15%  Similarity=0.195  Sum_probs=58.8

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeee--EECCCCCEEEEEEecCCCCCC
Q 008927          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFP--RMDPRGERMAWIEWHHPNMPW  270 (548)
Q Consensus       193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p--~~SPDGk~La~~~~~~~~~p~  270 (548)
                      +.+..|-++|++.+-.+++.       .-.||  +...+-   +..+......++.|  ..+|.|++++--+  .     
T Consensus       345 i~~i~F~~~g~rFissSDdk-------s~riW--e~~~~v---~ik~i~~~~~hsmP~~~~~P~~~~~~aQs--~-----  405 (503)
T KOG0282|consen  345 ILDITFVDEGRRFISSSDDK-------SVRIW--ENRIPV---PIKNIADPEMHTMPCLTLHPNGKWFAAQS--M-----  405 (503)
T ss_pred             eeeeEEccCCceEeeeccCc-------cEEEE--EcCCCc---cchhhcchhhccCcceecCCCCCeehhhc--c-----
Confidence            44567888888765544332       12344  433333   22222222234434  5689999876332  1     


Q ss_pred             CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccC
Q 008927          271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN  334 (548)
Q Consensus       271 ~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~  334 (548)
                       .+.|++..+...-.....+...+....  +...+..|||||+.++.-|. +|  .++.+|-.+
T Consensus       406 -dN~i~ifs~~~~~r~nkkK~feGh~va--Gys~~v~fSpDG~~l~SGds-dG--~v~~wdwkt  463 (503)
T KOG0282|consen  406 -DNYIAIFSTVPPFRLNKKKRFEGHSVA--GYSCQVDFSPDGRTLCSGDS-DG--KVNFWDWKT  463 (503)
T ss_pred             -CceEEEEecccccccCHhhhhcceecc--CceeeEEEcCCCCeEEeecC-Cc--cEEEeechh
Confidence             345666654321111111222221100  23457889999997777665 56  455555444

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=89.03  E-value=43  Score=39.19  Aligned_cols=59  Identities=12%  Similarity=0.082  Sum_probs=41.2

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEE
Q 008927          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE  262 (548)
Q Consensus       192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~  262 (548)
                      .+.++.+--|+..|.++.+.         .+|.++|.++..   ...+..-.+.+....||||++.++++.
T Consensus        70 ~i~s~~fl~d~~~i~v~~~~---------G~iilvd~et~~---~eivg~vd~GI~aaswS~Dee~l~liT  128 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITAL---------GDIILVDPETLE---LEIVGNVDNGISAASWSPDEELLALIT  128 (1265)
T ss_pred             ceEEEEEecccceEEEEecC---------CcEEEEcccccc---eeeeeeccCceEEEeecCCCcEEEEEe
Confidence            44555666676666554322         368888888877   666655555577789999999999887

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.02  E-value=28  Score=35.27  Aligned_cols=138  Identities=14%  Similarity=0.093  Sum_probs=66.7

Q ss_pred             ccCceEEcCCCcEEEEEecCCCCC-ceEEEEcCCCCCCCCccc-CCCCCC-------ccccceeeCCeeeEEECCEEEEE
Q 008927           90 RLGGTAVDGHGRLIWLESRPTEAG-RGVLVKEPAKAGDEPSDI-TPKEYA-------VRTTAQEYGGGAFRIFGDTVIFS  160 (548)
Q Consensus        90 ~~~~~~~spg~~i~~~~~~~~e~g-r~~l~~~~~~~~~~~~~l-t~~~~~-------~r~~v~~ygg~~~~~~~~~i~F~  160 (548)
                      ....+++.+++.+++........+ ...|++.+.+| ...+.+ +|..+.       .+..-..+.+-+++++|..|+..
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G-~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDG-RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCC-cccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            344556632555554431110111 26788887763 223444 354431       11111122234566777766666


Q ss_pred             eCCC---------------CeEEEEeCCCCCCC-ce----ecCCCC-CCCCceecceeeCCCCCEEEEEEeccCCCCCCc
Q 008927          161 NYKD---------------QRLYKHSIDSKDSS-PL----PITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNS  219 (548)
Q Consensus       161 ~~~~---------------~~Ly~~~~~~~~~~-~~----~lT~~~-~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~  219 (548)
                      ....               -+|+.++...+ ++ ..    ++.+.. ......++++.+-+|++.|+.  |+........
T Consensus       165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~-~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL--ER~~~~~~~~  241 (326)
T PF13449_consen  165 MESPLKQDGPRANPDNGSPLRILRYDPKTP-GEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL--ERDFSPGTGN  241 (326)
T ss_pred             ECccccCCCcccccccCceEEEEEecCCCC-CccceEEEEeCCccccccCCCCceeEEEECCCcEEEE--EccCCCCccc
Confidence            4221               25777777541 21 22    222100 001356778888999985444  3321111224


Q ss_pred             eeEEEEEECCCC
Q 008927          220 TTEIVAIALNGQ  231 (548)
Q Consensus       220 ~~~l~~idl~~g  231 (548)
                      ...||.+++...
T Consensus       242 ~~ri~~v~l~~a  253 (326)
T PF13449_consen  242 YKRIYRVDLSDA  253 (326)
T ss_pred             eEEEEEEEcccc
Confidence            678999998753

>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional

Probab=89.00  E-value=0.86  Score=48.71  Aligned_cols=61  Identities=11%  Similarity=0.157  Sum_probs=39.9

Q ss_pred             EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccCh-HHHHHH---hcCcEEEEeCCCCC
Q 008927          465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWT---SRGWAFVDVNYGGS  535 (548)
Q Consensus       465 ~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~-~~Q~~a---srGyaVl~~NyRGS  535 (548)
                      .|-+. .|.++|.....|.++       ..-|.||++||.+....  .|.. .+..|+   .+||.|+.+|+||-
T Consensus       179 ~~~~~-~~~~l~~~~~gp~~~-------~~k~~VVLlHG~~~s~~--~W~~~~~~~L~~~~~~~yrVia~Dl~G~  243 (481)
T PLN03087        179 SWLSS-SNESLFVHVQQPKDN-------KAKEDVLFIHGFISSSA--FWTETLFPNFSDAAKSTYRLFAVDLLGF  243 (481)
T ss_pred             eeEee-CCeEEEEEEecCCCC-------CCCCeEEEECCCCccHH--HHHHHHHHHHHHHhhCCCEEEEECCCCC
Confidence            34443 567888888888531       12267899999986543  2321 123444   47999999999983

>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]

Probab=88.76  E-value=0.99  Score=44.97  Aligned_cols=58  Identities=26%  Similarity=0.392  Sum_probs=38.0

Q ss_pred             CeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927          472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       472 G~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG  537 (548)
                      |.....|...|.+        .+.|+||..||==.+...+.....+..+..|||.|+..|.||=.|
T Consensus        60 ~~~~ldw~~~p~~--------~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~  117 (345)
T COG0429          60 GFIDLDWSEDPRA--------AKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSG  117 (345)
T ss_pred             CEEEEeeccCccc--------cCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccC
Confidence            4556777777743        345999999984222222211233456778999999999999544

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=88.68  E-value=7.4  Score=39.61  Aligned_cols=81  Identities=15%  Similarity=0.177  Sum_probs=48.3

Q ss_pred             CCeEEEEeCCCCCCCceecCCCCCCCCceec-ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee-
Q 008927          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYA-DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-  241 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~-~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~-  241 (548)
                      +|+|+++|..+  .+.+.|...     +++. ..+.|||+..|++. |..       ..+|.++=+.+.+.++.+.+++ 
T Consensus       198 ~GRl~~YD~~t--K~~~VLld~-----L~F~NGlaLS~d~sfvl~~-Et~-------~~ri~rywi~g~k~gt~EvFa~~  262 (376)
T KOG1520|consen  198 TGRLFRYDPST--KVTKVLLDG-----LYFPNGLALSPDGSFVLVA-ETT-------TARIKRYWIKGPKAGTSEVFAEG  262 (376)
T ss_pred             ccceEEecCcc--cchhhhhhc-----ccccccccCCCCCCEEEEE-eec-------cceeeeeEecCCccCchhhHhhc
Confidence            46888888876  566666553     4555 46899999998875 542       1344444444443111456665 


Q ss_pred             cCCceeeeEECCCCC-EEE
Q 008927          242 GSDFYAFPRMDPRGE-RMA  259 (548)
Q Consensus       242 ~~~~~~~p~~SPDGk-~La  259 (548)
                      -+++-.+-+.+++|. +++
T Consensus       263 LPG~PDNIR~~~~G~fWVa  281 (376)
T KOG1520|consen  263 LPGYPDNIRRDSTGHFWVA  281 (376)
T ss_pred             CCCCCcceeECCCCCEEEE
Confidence            344434556677886 344

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=88.09  E-value=15  Score=36.17  Aligned_cols=96  Identities=17%  Similarity=0.295  Sum_probs=54.1

Q ss_pred             CCceeeeEECCCCCEEE-EEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCC
Q 008927          243 SDFYAFPRMDPRGERMA-WIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK  321 (548)
Q Consensus       243 ~~~~~~p~~SPDGk~La-~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~  321 (548)
                      .|.++...|||.-+.++ -.+|       + ..+.+.++...|.+..+..... +    ..+....|+.||..+|+..- 
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SW-------D-~tVR~wevq~~g~~~~ka~~~~-~----~PvL~v~WsddgskVf~g~~-   92 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSW-------D-GTVRIWEVQNSGQLVPKAQQSH-D----GPVLDVCWSDDGSKVFSGGC-   92 (347)
T ss_pred             ccchheeEeccccCceEEeccc-------C-CceEEEEEecCCcccchhhhcc-C----CCeEEEEEccCCceEEeecc-
Confidence            45677888999444333 2344       3 3355556654454322111111 1    34677899999997777654 


Q ss_pred             CCeeeEEEEeccCCeeEeecccccccCCCcccc
Q 008927          322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF  354 (548)
Q Consensus       322 ~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~  354 (548)
                      ++  ++-.+|++++++.++...++-+..-.|+.
T Consensus        93 Dk--~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~  123 (347)
T KOG0647|consen   93 DK--QAKLWDLASGQVSQVAAHDAPVKTCHWVP  123 (347)
T ss_pred             CC--ceEEEEccCCCeeeeeecccceeEEEEec
Confidence            44  45567888998887753333222334543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=87.80  E-value=9.3  Score=42.19  Aligned_cols=160  Identities=8%  Similarity=0.027  Sum_probs=78.4

Q ss_pred             CccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEE
Q 008927           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY  168 (548)
Q Consensus        89 ~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly  168 (548)
                      -.+..+++.|-+.=||+.+--  +|...||.+...   +...++.-. .+-+.+      .|+|||+..+.-.. +|..+
T Consensus       410 dfVTcVaFnPvDDryFiSGSL--D~KvRiWsI~d~---~Vv~W~Dl~-~lITAv------cy~PdGk~avIGt~-~G~C~  476 (712)
T KOG0283|consen  410 DFVTCVAFNPVDDRYFISGSL--DGKVRLWSISDK---KVVDWNDLR-DLITAV------CYSPDGKGAVIGTF-NGYCR  476 (712)
T ss_pred             CeeEEEEecccCCCcEeeccc--ccceEEeecCcC---eeEeehhhh-hhheeE------EeccCCceEEEEEe-ccEEE
Confidence            445566777733445666433  688899988543   455554322 222332      56777654333221 22222


Q ss_pred             EEeCCCCC---CCceecCCCCCCCCceecceeeCCC-CCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC
Q 008927          169 KHSIDSKD---SSPLPITPDYGEPLVSYADGIFDPR-FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD  244 (548)
Q Consensus       169 ~~~~~~~~---~~~~~lT~~~~~~~~~~~~~~~SpD-G~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~  244 (548)
                      .++..+.+   ..-..++..++....++..+.+.|. -..|+.++.|         .+|-++|+...+   +.....|..
T Consensus       477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD---------SrIRI~d~~~~~---lv~KfKG~~  544 (712)
T KOG0283|consen  477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND---------SRIRIYDGRDKD---LVHKFKGFR  544 (712)
T ss_pred             EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCC---------CceEEEeccchh---hhhhhcccc
Confidence            22222200   0001111111101124556665552 2355555443         467778876655   322222211


Q ss_pred             ---ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEec
Q 008927          245 ---FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS  281 (548)
Q Consensus       245 ---~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~  281 (548)
                         ......|+.||++|+..+        +...+|+-+.+
T Consensus       545 n~~SQ~~Asfs~Dgk~IVs~s--------eDs~VYiW~~~  576 (712)
T KOG0283|consen  545 NTSSQISASFSSDGKHIVSAS--------EDSWVYIWKND  576 (712)
T ss_pred             cCCcceeeeEccCCCEEEEee--------cCceEEEEeCC
Confidence               123457899999998766        23568888765

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=87.76  E-value=34  Score=35.72  Aligned_cols=204  Identities=10%  Similarity=0.020  Sum_probs=117.8

Q ss_pred             CCccccCCCCCCCcCCHHHHhcCCCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccce
Q 008927           65 QDKITAPYGSWKSPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQ  143 (548)
Q Consensus        65 ~~~~~~~~g~w~spit~~~l~~~~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~  143 (548)
                      ..-.+.-|+ -++..-...+.+..-.+...+++| ++.++-..+   +++...+|..+..  ....+|+..+-.+|.   
T Consensus        88 ~sG~V~vfD-~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~s---Dd~v~k~~d~s~a--~v~~~l~~htDYVR~---  158 (487)
T KOG0310|consen   88 ESGHVKVFD-MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGS---DDKVVKYWDLSTA--YVQAELSGHTDYVRC---  158 (487)
T ss_pred             CcCcEEEec-cccHHHHHHHhhccCceeEEEecccCCeEEEecC---CCceEEEEEcCCc--EEEEEecCCcceeEe---
Confidence            344555666 455555666766656677888899 776655432   2344455655433  122245555555664   


Q ss_pred             eeCCeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 008927          144 EYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (548)
Q Consensus       144 ~ygg~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l  223 (548)
                          ++|+|..+.|+++-.-|+-|-..|+..  ..++.++-.   .+..+.+..+-|.|..|+-- ..         +.+
T Consensus       159 ----g~~~~~~~hivvtGsYDg~vrl~DtR~--~~~~v~eln---hg~pVe~vl~lpsgs~iasA-gG---------n~v  219 (487)
T KOG0310|consen  159 ----GDISPANDHIVVTGSYDGKVRLWDTRS--LTSRVVELN---HGCPVESVLALPSGSLIASA-GG---------NSV  219 (487)
T ss_pred             ----eccccCCCeEEEecCCCceEEEEEecc--CCceeEEec---CCCceeeEEEcCCCCEEEEc-CC---------CeE
Confidence                478888889999977777555445543  223333221   13456677788888876552 21         468


Q ss_pred             EEEECCCCCccCcEEeeec---CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927          224 VAIALNGQNIQEPKVLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (548)
Q Consensus       224 ~~idl~~g~~~~~~~L~~~---~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~  300 (548)
                      -++|+-+|.    +.++..   ..-+...++.-|+.+|.=.+-        ...+-+++.. +     ...+.+-.  +.
T Consensus       220 kVWDl~~G~----qll~~~~~H~KtVTcL~l~s~~~rLlS~sL--------D~~VKVfd~t-~-----~Kvv~s~~--~~  279 (487)
T KOG0310|consen  220 KVWDLTTGG----QLLTSMFNHNKTVTCLRLASDSTRLLSGSL--------DRHVKVFDTT-N-----YKVVHSWK--YP  279 (487)
T ss_pred             EEEEecCCc----eehhhhhcccceEEEEEeecCCceEeeccc--------ccceEEEEcc-c-----eEEEEeee--cc
Confidence            888999764    344332   233566778888888763222        2345566643 1     22222211  11


Q ss_pred             cCCcCceECcCCc-EEE
Q 008927          301 ESPTEPKWSSKGE-LFF  316 (548)
Q Consensus       301 ~~~~~~~wspDG~-L~~  316 (548)
                      ..+.+..-+||++ ++.
T Consensus       280 ~pvLsiavs~dd~t~vi  296 (487)
T KOG0310|consen  280 GPVLSIAVSPDDQTVVI  296 (487)
T ss_pred             cceeeEEecCCCceEEE
Confidence            4567788899988 554

>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]

Probab=87.64  E-value=0.74  Score=45.26  Aligned_cols=43  Identities=23%  Similarity=0.290  Sum_probs=32.1

Q ss_pred             CCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       492 ~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      +.+||+||+.||=-.++  .-|+..---+||+||+|+.|..|-.+
T Consensus       115 ~~k~PvvvFSHGLggsR--t~YSa~c~~LAShG~VVaavEHRD~S  157 (399)
T KOG3847|consen  115 NDKYPVVVFSHGLGGSR--TLYSAYCTSLASHGFVVAAVEHRDRS  157 (399)
T ss_pred             CCCccEEEEecccccch--hhHHHHhhhHhhCceEEEEeecccCc
Confidence            67999999999943222  23444445699999999999998654

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=87.62  E-value=34  Score=34.63  Aligned_cols=126  Identities=10%  Similarity=0.024  Sum_probs=67.8

Q ss_pred             EECCEEEEEeCCC------CeEEEEeCCCCCCCceec-CCC-C-------C--CCCceecceeeCCCCCEEEEEEeccC-
Q 008927          152 IFGDTVIFSNYKD------QRLYKHSIDSKDSSPLPI-TPD-Y-------G--EPLVSYADGIFDPRFNRYVTVREDRR-  213 (548)
Q Consensus       152 ~~~~~i~F~~~~~------~~Ly~~~~~~~~~~~~~l-T~~-~-------~--~~~~~~~~~~~SpDG~~i~~v~~~~~-  213 (548)
                      +.++.++.+.+..      .+|++++.+|  ...+.+ .+. .       .  .....+..++++|||+.|+.+.|..- 
T Consensus        93 ~~~g~~~is~E~~~~~~~~p~I~~~~~~G--~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~  170 (326)
T PF13449_consen   93 PPDGSFWISSEGGRTGGIPPRIRRFDLDG--RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLK  170 (326)
T ss_pred             ecCCCEEEEeCCccCCCCCCEEEEECCCC--cccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECcccc
Confidence            3555677777777      8999999886  333333 111 0       0  01123557899999998777666431 


Q ss_pred             -CCC-----CCceeEEEEEECCC-CCccCcEEeeec--------CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEE
Q 008927          214 -QDA-----LNSTTEIVAIALNG-QNIQEPKVLVSG--------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG  278 (548)
Q Consensus       214 -~~~-----~~~~~~l~~idl~~-g~~~~~~~L~~~--------~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~  278 (548)
                       +..     ......|+.+|..+ ++. ..+....-        ....+...+-+|++-|+ +.++....--...+||.+
T Consensus       171 ~d~~~~~~~~~~~~ri~~~d~~~~~~~-~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv-LER~~~~~~~~~~ri~~v  248 (326)
T PF13449_consen  171 QDGPRANPDNGSPLRILRYDPKTPGEP-VAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV-LERDFSPGTGNYKRIYRV  248 (326)
T ss_pred             CCCcccccccCceEEEEEecCCCCCcc-ceEEEEeCCccccccCCCCceeEEEECCCcEEE-EEccCCCCccceEEEEEE
Confidence             111     11236889999886 321 01222211        12245566777888444 553321100024577777


Q ss_pred             Eec
Q 008927          279 YIS  281 (548)
Q Consensus       279 ~~~  281 (548)
                      ++.
T Consensus       249 ~l~  251 (326)
T PF13449_consen  249 DLS  251 (326)
T ss_pred             Ecc
Confidence            765

>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit

Probab=87.61  E-value=2.1  Score=43.87  Aligned_cols=66  Identities=17%  Similarity=0.179  Sum_probs=38.1

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccC---ccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGG---PTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGG---P~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      |..+-++.  ++.  ..+-|.|...     ...+.| ||.+||=   +...+.......+.+|+++||.|+.+|+||..
T Consensus        38 ~~~~v~~~--~~~--~l~~~~~~~~-----~~~~~p-vl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g  106 (350)
T TIGR01836        38 PKEVVYRE--DKV--VLYRYTPVKD-----NTHKTP-LLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPD  106 (350)
T ss_pred             CCceEEEc--CcE--EEEEecCCCC-----cCCCCc-EEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCC
Confidence            34444544  444  4444566421     122446 7778862   11111122345688999999999999999853

This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=87.53  E-value=1.5  Score=35.10  Aligned_cols=52  Identities=13%  Similarity=0.163  Sum_probs=34.8

Q ss_pred             CCeEEEEeCCCCCCCceecCCCCCCCCceec-ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCC
Q 008927          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYA-DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG  230 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~-~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~  230 (548)
                      +|+|+++++.+  ++.+.|-..     +.++ ..++|+|++.|++. |..       +.+|.++-+.+
T Consensus        36 ~GRll~ydp~t--~~~~vl~~~-----L~fpNGVals~d~~~vlv~-Et~-------~~Ri~rywl~G   88 (89)
T PF03088_consen   36 TGRLLRYDPST--KETTVLLDG-----LYFPNGVALSPDESFVLVA-ETG-------RYRILRYWLKG   88 (89)
T ss_dssp             -EEEEEEETTT--TEEEEEEEE-----ESSEEEEEE-TTSSEEEEE-EGG-------GTEEEEEESSS
T ss_pred             CcCEEEEECCC--CeEEEehhC-----CCccCeEEEcCCCCEEEEE-ecc-------CceEEEEEEeC
Confidence            36999999998  666666543     4444 46799999997775 543       35677766654

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=87.53  E-value=30  Score=33.82  Aligned_cols=195  Identities=11%  Similarity=0.049  Sum_probs=102.2

Q ss_pred             eeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCc-eeeeEECCCCCEEEEEEecCCCCCCCCce
Q 008927          196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF-YAFPRMDPRGERMAWIEWHHPNMPWDKAE  274 (548)
Q Consensus       196 ~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~-~~~p~~SPDGk~La~~~~~~~~~p~~~~~  274 (548)
                      ...+|||. |.|....        ...|-.+|..+|+   .++..-+.+. -......|||.  +|+. +.      ...
T Consensus        67 vapapdG~-VWft~qg--------~gaiGhLdP~tGe---v~~ypLg~Ga~Phgiv~gpdg~--~Wit-d~------~~a  125 (353)
T COG4257          67 VAPAPDGA-VWFTAQG--------TGAIGHLDPATGE---VETYPLGSGASPHGIVVGPDGS--AWIT-DT------GLA  125 (353)
T ss_pred             cccCCCCc-eEEecCc--------cccceecCCCCCc---eEEEecCCCCCCceEEECCCCC--eeEe-cC------cce
Confidence            34667875 5665221        2467788999998   6665433322 12336789997  5665 11      123


Q ss_pred             EEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccc
Q 008927          275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF  354 (548)
Q Consensus       275 L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~  354 (548)
                      |..++-+ ..++++ ..+..+...  .....+.|.++|.|+|+...  |...  ++|+..+.++ +.+....       .
T Consensus       126 I~R~dpk-t~evt~-f~lp~~~a~--~nlet~vfD~~G~lWFt~q~--G~yG--rLdPa~~~i~-vfpaPqG-------~  189 (353)
T COG4257         126 IGRLDPK-TLEVTR-FPLPLEHAD--ANLETAVFDPWGNLWFTGQI--GAYG--RLDPARNVIS-VFPAPQG-------G  189 (353)
T ss_pred             eEEecCc-ccceEE-eecccccCC--CcccceeeCCCccEEEeecc--ccce--ecCcccCcee-eeccCCC-------C
Confidence            3333333 233322 223332112  45678899999999998654  3332  5666555433 3221100       1


Q ss_pred             cCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCc---eeEeeeecC-CEEEEEEecCCCCCeEEEEE
Q 008927          355 GINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT---DIDNITLGN-DCLFVEGASGVEPSSVAKVT  430 (548)
Q Consensus       355 ~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~---~~~~~s~d~-~~l~~~~ss~~~p~~l~~~d  430 (548)
                      +....+..|    ++.+++....+  ..|.++|..++..+.+..|..   ....+..|. ++++...   -..+.++++|
T Consensus       190 gpyGi~atp----dGsvwyaslag--naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~witt---wg~g~l~rfd  260 (353)
T COG4257         190 GPYGICATP----DGSVWYASLAG--NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITT---WGTGSLHRFD  260 (353)
T ss_pred             CCcceEECC----CCcEEEEeccc--cceEEcccccCCcceecCCCcccccccccccCccCcEEEec---cCCceeeEeC
Confidence            111233442    44566554332  357889988887776665432   122232333 4454442   2356889998


Q ss_pred             cCCCce
Q 008927          431 LDDHKL  436 (548)
Q Consensus       431 ~~~~~~  436 (548)
                      ......
T Consensus       261 Ps~~sW  266 (353)
T COG4257         261 PSVTSW  266 (353)
T ss_pred             cccccc
Confidence            876553

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=87.42  E-value=29  Score=38.81  Aligned_cols=154  Identities=17%  Similarity=0.204  Sum_probs=81.4

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      .|-...++|||++...-.|-+-.+.|  +|++.+....   -..-..++++--++.+++.-+.        ...|-+.-|
T Consensus      1031 dfDC~e~mvyWtDv~g~SI~rasL~G--~Ep~ti~n~~---L~SPEGiAVDh~~Rn~ywtDS~--------lD~IevA~L 1097 (1289)
T KOG1214|consen 1031 DFDCRERMVYWTDVAGRSISRASLEG--AEPETIVNSG---LISPEGIAVDHIRRNMYWTDSV--------LDKIEVALL 1097 (1289)
T ss_pred             ecccccceEEEeecCCCccccccccC--CCCceeeccc---CCCccceeeeeccceeeeeccc--------cchhheeec
Confidence            34344567888876666777778887  7777665421   0001112222233444443111        123445556


Q ss_pred             CCCCccCcEEeeecCC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          229 NGQNIQEPKVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      ++.+   .+.|....- .-...+..|=+..|.|..|++.     +..|-..+++  |+  +.+++...+.   .-...+.
T Consensus      1098 dG~~---rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRe-----nPkIets~mD--G~--NrRilin~Di---gLPNGLt 1162 (1289)
T KOG1214|consen 1098 DGSE---RKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRE-----NPKIETSSMD--GE--NRRILINTDI---GLPNGLT 1162 (1289)
T ss_pred             CCce---eeEEEeecccCcceEEeecccCceeecccccc-----CCcceeeccC--Cc--cceEEeeccc---CCCCCce
Confidence            6665   555553321 1123456777888999999875     3456666775  43  3455544331   2345677


Q ss_pred             ECcCCcEEEEEeCCCCeeeEEEEec
Q 008927          308 WSSKGELFFVTDRKNGFWNLHKWIE  332 (548)
Q Consensus       308 wspDG~L~~~sd~~~g~~~Ly~~d~  332 (548)
                      |.|..+++.-.|.  |...|--+..
T Consensus      1163 fdpfs~~LCWvDA--Gt~rleC~~p 1185 (1289)
T KOG1214|consen 1163 FDPFSKLLCWVDA--GTKRLECTLP 1185 (1289)
T ss_pred             eCcccceeeEEec--CCcceeEecC
Confidence            8888774444443  3334443333

>TIGR03611 RutD pyrimidine utilization protein D

Probab=87.40  E-value=0.7  Score=44.14  Aligned_cols=40  Identities=20%  Similarity=0.248  Sum_probs=28.5

Q ss_pred             CCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       494 ~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      +.|+||++||.+....  .|...++.|+ +||.|+.+|+||..
T Consensus        12 ~~~~iv~lhG~~~~~~--~~~~~~~~l~-~~~~vi~~D~~G~G   51 (257)
T TIGR03611        12 DAPVVVLSSGLGGSGS--YWAPQLDVLT-QRFHVVTYDHRGTG   51 (257)
T ss_pred             CCCEEEEEcCCCcchh--HHHHHHHHHH-hccEEEEEcCCCCC
Confidence            3588999999876542  3334445554 68999999999853

This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.

>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein

Probab=87.34  E-value=0.98  Score=43.97  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=27.7

Q ss_pred             cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      |.||++||.+....  .|....+.++ ++|.|+.+|+||-
T Consensus        29 ~~vv~~hG~~~~~~--~~~~~~~~l~-~~~~vi~~D~~G~   65 (278)
T TIGR03056        29 PLLLLLHGTGASTH--SWRDLMPPLA-RSFRVVAPDLPGH   65 (278)
T ss_pred             CeEEEEcCCCCCHH--HHHHHHHHHh-hCcEEEeecCCCC
Confidence            78999999875433  3455556664 5799999999983

Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=87.20  E-value=2  Score=42.86  Aligned_cols=144  Identities=11%  Similarity=0.125  Sum_probs=84.1

Q ss_pred             CEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc
Q 008927          155 DTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (548)
Q Consensus       155 ~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~  233 (548)
                      ..|+-+...+..|+++|+-.  +.| +.++-     .++-...+|+|.+  ..|+..+.       ...||..|...=..
T Consensus       200 TsILas~~sDrsIvLyD~R~--~~Pl~KVi~-----~mRTN~IswnPea--fnF~~a~E-------D~nlY~~DmR~l~~  263 (433)
T KOG0268|consen  200 TSILASCASDRSIVLYDLRQ--ASPLKKVIL-----TMRTNTICWNPEA--FNFVAANE-------DHNLYTYDMRNLSR  263 (433)
T ss_pred             chheeeeccCCceEEEeccc--CCccceeee-----eccccceecCccc--cceeeccc-------cccceehhhhhhcc
Confidence            34555545567899999876  433 34433     2466678999943  45654332       25799998765430


Q ss_pred             cCcEEeeecC-CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCC
Q 008927          234 QEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (548)
Q Consensus       234 ~~~~~L~~~~-~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG  312 (548)
                        +-.+..+. ..+....+||-|+-++=-+.+        ..|.++.+.. +.   .+-+-...  +...+....||-|.
T Consensus       264 --p~~v~~dhvsAV~dVdfsptG~EfvsgsyD--------ksIRIf~~~~-~~---SRdiYhtk--RMq~V~~Vk~S~Ds  327 (433)
T KOG0268|consen  264 --PLNVHKDHVSAVMDVDFSPTGQEFVSGSYD--------KSIRIFPVNH-GH---SRDIYHTK--RMQHVFCVKYSMDS  327 (433)
T ss_pred             --cchhhcccceeEEEeccCCCcchhcccccc--------ceEEEeecCC-Cc---chhhhhHh--hhheeeEEEEeccc
Confidence              22222222 124566899999987633322        3577777763 43   12121111  11457788999999


Q ss_pred             cEEEE-EeCCCCeeeEEEEec
Q 008927          313 ELFFV-TDRKNGFWNLHKWIE  332 (548)
Q Consensus       313 ~L~~~-sd~~~g~~~Ly~~d~  332 (548)
                      +.++. +|  ++.-.||+...
T Consensus       328 kyi~SGSd--d~nvRlWka~A  346 (433)
T KOG0268|consen  328 KYIISGSD--DGNVRLWKAKA  346 (433)
T ss_pred             cEEEecCC--Ccceeeeecch
Confidence            85555 44  57778888664

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=86.79  E-value=33  Score=38.07  Aligned_cols=174  Identities=13%  Similarity=0.124  Sum_probs=86.2

Q ss_pred             EEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCccc
Q 008927          222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE  301 (548)
Q Consensus       222 ~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~  301 (548)
                      +||.  +...+   --.+....+|+.-..|.|--.+- |++-.-      ...+.+-.+. +.+   +..-+.-  .  .
T Consensus       393 RLWh--~~~~~---CL~~F~HndfVTcVaFnPvDDry-FiSGSL------D~KvRiWsI~-d~~---Vv~W~Dl--~--~  452 (712)
T KOG0283|consen  393 RLWH--PGRKE---CLKVFSHNDFVTCVAFNPVDDRY-FISGSL------DGKVRLWSIS-DKK---VVDWNDL--R--D  452 (712)
T ss_pred             Eeec--CCCcc---eeeEEecCCeeEEEEecccCCCc-Eeeccc------ccceEEeecC-cCe---eEeehhh--h--h
Confidence            4554  44444   34556678899888999944432 455221      1244444554 222   1111221  1  4


Q ss_pred             CCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEe-----ecccccccCCCcccccCcceeeeeecCCCCEEEEEEE
Q 008927          302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-----IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR  376 (548)
Q Consensus       302 ~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~-----l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~  376 (548)
                      -+....++|||+.+++-.- .|.-.+|..  .+-+.+.     +.....- .. .-+   ..+.+.|.  +.+.|+++.+
T Consensus       453 lITAvcy~PdGk~avIGt~-~G~C~fY~t--~~lk~~~~~~I~~~~~Kk~-~~-~rI---TG~Q~~p~--~~~~vLVTSn  522 (712)
T KOG0283|consen  453 LITAVCYSPDGKGAVIGTF-NGYCRFYDT--EGLKLVSDFHIRLHNKKKK-QG-KRI---TGLQFFPG--DPDEVLVTSN  522 (712)
T ss_pred             hheeEEeccCCceEEEEEe-ccEEEEEEc--cCCeEEEeeeEeeccCccc-cC-cee---eeeEecCC--CCCeEEEecC
Confidence            5788899999997777655 665555543  2333221     1111000 00 001   12334321  3346766654


Q ss_pred             eCCeEEEEEEECCCCceEeecCCC----cee-EeeeecCCEEEEEEecCCCCCeEEEEEcC
Q 008927          377 QNGRSYLGILDDFGHSLSLLDIPF----TDI-DNITLGNDCLFVEGASGVEPSSVAKVTLD  432 (548)
Q Consensus       377 ~~g~~~L~~~dl~~g~~~~l~~~~----~~~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~  432 (548)
                         .++|.++|+.+.++...-.++    ..+ ..++.||++|+....    -..+|+++.+
T Consensus       523 ---DSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se----Ds~VYiW~~~  576 (712)
T KOG0283|consen  523 ---DSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE----DSWVYIWKND  576 (712)
T ss_pred             ---CCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec----CceEEEEeCC
Confidence               345677776444332211222    222 345678888876652    2567777653

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=86.79  E-value=34  Score=33.69  Aligned_cols=115  Identities=13%  Similarity=0.105  Sum_probs=66.3

Q ss_pred             ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEE-eCCC
Q 008927          245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT-DRKN  322 (548)
Q Consensus       245 ~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~s-d~~~  322 (548)
                      .+....|+|||..+|=-..        ..+|++-++.++-  ++.-.+.+..    ..+..+.|.+||. |+-.+ |+  
T Consensus        49 eI~~~~F~P~gs~~aSgG~--------Dr~I~LWnv~gdc--eN~~~lkgHs----gAVM~l~~~~d~s~i~S~gtDk--  112 (338)
T KOG0265|consen   49 EIYTIKFHPDGSCFASGGS--------DRAIVLWNVYGDC--ENFWVLKGHS----GAVMELHGMRDGSHILSCGTDK--  112 (338)
T ss_pred             eEEEEEECCCCCeEeecCC--------cceEEEEeccccc--cceeeecccc----ceeEeeeeccCCCEEEEecCCc--
Confidence            3455689999997762111        2467777765322  2444555554    6789999999999 54443 44  


Q ss_pred             CeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCC
Q 008927          323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH  391 (548)
Q Consensus       323 g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g  391 (548)
                         .++.+|.++|+...-......+..        ...+..   -+-.++.+...++.-.|  .|...+
T Consensus       113 ---~v~~wD~~tG~~~rk~k~h~~~vN--------s~~p~r---rg~~lv~SgsdD~t~kl--~D~R~k  165 (338)
T KOG0265|consen  113 ---TVRGWDAETGKRIRKHKGHTSFVN--------SLDPSR---RGPQLVCSGSDDGTLKL--WDIRKK  165 (338)
T ss_pred             ---eEEEEecccceeeehhccccceee--------ecCccc---cCCeEEEecCCCceEEE--Eeeccc
Confidence               789999999875433222222211        011221   24456666666665555  465443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=86.78  E-value=42  Score=34.74  Aligned_cols=123  Identities=8%  Similarity=-0.001  Sum_probs=69.5

Q ss_pred             CceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCC
Q 008927          190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP  269 (548)
Q Consensus       190 ~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p  269 (548)
                      .+.+....|.|||  ++|....       ....|-.+|+.++..  ....-....-+....||-+|=+||-.+ +     
T Consensus       347 ~v~~ts~~fHpDg--Lifgtgt-------~d~~vkiwdlks~~~--~a~Fpght~~vk~i~FsENGY~Lat~a-d-----  409 (506)
T KOG0289|consen  347 DVEYTSAAFHPDG--LIFGTGT-------PDGVVKIWDLKSQTN--VAKFPGHTGPVKAISFSENGYWLATAA-D-----  409 (506)
T ss_pred             cceeEEeeEcCCc--eEEeccC-------CCceEEEEEcCCccc--cccCCCCCCceeEEEeccCceEEEEEe-c-----
Confidence            3567888899999  4554222       124567778887641  222222222356678999998888444 2     


Q ss_pred             CCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEee
Q 008927          270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAI  340 (548)
Q Consensus       270 ~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l  340 (548)
                        ...+.+.|+.....   ...+.-.+ .  ..+....|..-|+++.+.   ...-.+|.+.-.+.+++.+
T Consensus       410 --d~~V~lwDLRKl~n---~kt~~l~~-~--~~v~s~~fD~SGt~L~~~---g~~l~Vy~~~k~~k~W~~~  469 (506)
T KOG0289|consen  410 --DGSVKLWDLRKLKN---FKTIQLDE-K--KEVNSLSFDQSGTYLGIA---GSDLQVYICKKKTKSWTEI  469 (506)
T ss_pred             --CCeEEEEEehhhcc---cceeeccc-c--ccceeEEEcCCCCeEEee---cceeEEEEEecccccceee
Confidence              23488888874322   22222211 1  235667888888833333   1224677777555555444

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=86.71  E-value=6.4  Score=42.69  Aligned_cols=66  Identities=24%  Similarity=0.375  Sum_probs=39.2

Q ss_pred             ceeeCCCCCEEEEEEeccCCCCCC-----ceeE-----------EEEEECCCCCccCcEEeeecCC--ceeeeEECCCCC
Q 008927          195 DGIFDPRFNRYVTVREDRRQDALN-----STTE-----------IVAIALNGQNIQEPKVLVSGSD--FYAFPRMDPRGE  256 (548)
Q Consensus       195 ~~~~SpDG~~i~~v~~~~~~~~~~-----~~~~-----------l~~idl~~g~~~~~~~L~~~~~--~~~~p~~SPDGk  256 (548)
                      ++.|+|+|.  +++++|.......     ....           ++..+..+++   .+++..++.  -...|.|+|||+
T Consensus       440 NL~~d~~G~--LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~---~~rf~~~P~gaE~tG~~fspDg~  514 (524)
T PF05787_consen  440 NLAFDPDGN--LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGE---LKRFLVGPNGAEITGPCFSPDGR  514 (524)
T ss_pred             ceEECCCCC--EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccc---eeeeccCCCCcccccceECCCCC
Confidence            467999987  3445765322100     0011           4455566666   666654432  257899999999


Q ss_pred             EEEEEEecCC
Q 008927          257 RMAWIEWHHP  266 (548)
Q Consensus       257 ~La~~~~~~~  266 (548)
                      .| |+.-.||
T Consensus       515 tl-FvniQHP  523 (524)
T PF05787_consen  515 TL-FVNIQHP  523 (524)
T ss_pred             EE-EEEEeCC
Confidence            86 5665665

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.67  E-value=29  Score=33.36  Aligned_cols=149  Identities=11%  Similarity=0.100  Sum_probs=81.0

Q ss_pred             CCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeec
Q 008927          163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG  242 (548)
Q Consensus       163 ~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~  242 (548)
                      ..|+||++++++. +..+.+....-  .-..-+..||+....+++++...        ..|-+.|+.-.. .+.+.+.+.
T Consensus        36 G~G~L~ile~~~~-~gi~e~~s~d~--~D~LfdV~Wse~~e~~~~~a~GD--------GSLrl~d~~~~s-~Pi~~~kEH  103 (311)
T KOG0277|consen   36 GNGRLFILEVTDP-KGIQECQSYDT--EDGLFDVAWSENHENQVIAASGD--------GSLRLFDLTMPS-KPIHKFKEH  103 (311)
T ss_pred             cCceEEEEecCCC-CCeEEEEeeec--ccceeEeeecCCCcceEEEEecC--------ceEEEeccCCCC-cchhHHHhh
Confidence            3578999998631 22333322210  11345778999888777765432        244455532221 012333343


Q ss_pred             CCceeeeEECCCCCEEEEEEecCCCCCCCC-ceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeC
Q 008927          243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDK-AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR  320 (548)
Q Consensus       243 ~~~~~~p~~SPDGk~La~~~~~~~~~p~~~-~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~  320 (548)
                      ..-+....|++--+++..++      .|+. -+||..++.  .   ..+...+..    ..+.+..|+|--. ++.....
T Consensus       104 ~~EV~Svdwn~~~r~~~lts------SWD~TiKLW~~~r~--~---Sv~Tf~gh~----~~Iy~a~~sp~~~nlfas~Sg  168 (311)
T KOG0277|consen  104 KREVYSVDWNTVRRRIFLTS------SWDGTIKLWDPNRP--N---SVQTFNGHN----SCIYQAAFSPHIPNLFASASG  168 (311)
T ss_pred             hhheEEeccccccceeEEee------ccCCceEeecCCCC--c---ceEeecCCc----cEEEEEecCCCCCCeEEEccC
Confidence            33455667888666655443      1443 366655443  2   234455543    5678899999755 5554433


Q ss_pred             CCCeeeEEEEeccCCeeEee
Q 008927          321 KNGFWNLHKWIESNNEVLAI  340 (548)
Q Consensus       321 ~~g~~~Ly~~d~~~g~~~~l  340 (548)
                       ++..+||-++.. |+...+
T Consensus       169 -d~~l~lwdvr~~-gk~~~i  186 (311)
T KOG0277|consen  169 -DGTLRLWDVRSP-GKFMSI  186 (311)
T ss_pred             -CceEEEEEecCC-CceeEE
Confidence             777888877764 554433

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=85.42  E-value=8.2  Score=37.54  Aligned_cols=78  Identities=12%  Similarity=0.186  Sum_probs=41.5

Q ss_pred             eEECCCCCEEEEEEecCCCCCCCCceEEEEEecCC-CceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeE
Q 008927          249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL  327 (548)
Q Consensus       249 p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~-g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~L  327 (548)
                      .+.++|||.||.+.         ++.|-+-....+ ..+..+..+..++ .  ..-....||||+.|+..++. .|  .|
T Consensus         3 ~~~~~~Gk~lAi~q---------d~~iEiRsa~Ddf~si~~kcqVpkD~-~--PQWRkl~WSpD~tlLa~a~S-~G--~i   67 (282)
T PF15492_consen    3 LALSSDGKLLAILQ---------DQCIEIRSAKDDFSSIIGKCQVPKDP-N--PQWRKLAWSPDCTLLAYAES-TG--TI   67 (282)
T ss_pred             eeecCCCcEEEEEe---------ccEEEEEeccCCchheeEEEecCCCC-C--chheEEEECCCCcEEEEEcC-CC--eE
Confidence            46789999999776         222333222211 1111122233222 1  23456899999996666554 55  45


Q ss_pred             EEEeccCCeeEeec
Q 008927          328 HKWIESNNEVLAIY  341 (548)
Q Consensus       328 y~~d~~~g~~~~l~  341 (548)
                      ..+|+.+.+.-.+.
T Consensus        68 ~vfdl~g~~lf~I~   81 (282)
T PF15492_consen   68 RVFDLMGSELFVIP   81 (282)
T ss_pred             EEEecccceeEEcC
Confidence            55577665544443

>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]

Probab=85.35  E-value=1.9  Score=39.60  Aligned_cols=61  Identities=21%  Similarity=0.370  Sum_probs=37.7

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCcc-ChH----HHHHHhcCcEEEEeCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLS----IQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~-~~~----~Q~~asrGyaVl~~NyRG  534 (548)
                      +.|-++.. -| .+++.+-+++        .+..|+.|..|-=|.  .+... |.-    ...|..+||++|..||||
T Consensus         5 ~~v~i~Gp-~G-~le~~~~~~~--------~~~~~iAli~HPHPl--~gGtm~nkvv~~la~~l~~~G~atlRfNfRg   70 (210)
T COG2945           5 PTVIINGP-AG-RLEGRYEPAK--------TPAAPIALICHPHPL--FGGTMNNKVVQTLARALVKRGFATLRFNFRG   70 (210)
T ss_pred             CcEEecCC-cc-cceeccCCCC--------CCCCceEEecCCCcc--ccCccCCHHHHHHHHHHHhCCceEEeecccc
Confidence            34555554 33 3566555442        245688888885554  33322 222    345788999999999999

>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold

Probab=85.30  E-value=3.8  Score=40.08  Aligned_cols=64  Identities=23%  Similarity=0.334  Sum_probs=46.3

Q ss_pred             EEeeccCCCe--EEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          464 IEFPTEVPGQ--KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       464 i~~~s~~dG~--~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      +.|.+. +|.  ++.+.+.--.      |.+....+||-+||-|.++.  .|-...+.|.+.|..|+.+||-|+.
T Consensus         9 ~k~~~~-~~~~~~~~a~y~D~~------~~gs~~gTVv~~hGsPGSH~--DFkYi~~~l~~~~iR~I~iN~PGf~   74 (297)
T PF06342_consen    9 VKFQAE-NGKIVTVQAVYEDSL------PSGSPLGTVVAFHGSPGSHN--DFKYIRPPLDEAGIRFIGINYPGFG   74 (297)
T ss_pred             EEcccc-cCceEEEEEEEEecC------CCCCCceeEEEecCCCCCcc--chhhhhhHHHHcCeEEEEeCCCCCC
Confidence            445554 554  4666664221      12445579999999998875  5667788999999999999999853

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=85.29  E-value=55  Score=34.76  Aligned_cols=108  Identities=12%  Similarity=0.173  Sum_probs=51.0

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCC---C-CCceecceeeCCCC-----CEEEEEEeccCCCCCC-
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG---E-PLVSYADGIFDPRF-----NRYVTVREDRRQDALN-  218 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~---~-~~~~~~~~~~SpDG-----~~i~~v~~~~~~~~~~-  218 (548)
                      .|.+|| +|+++....++|++++..+  +..+.+....+   . ......+++++||-     +..+|+.......... 
T Consensus        36 aflPDG-~llVtER~~G~I~~v~~~~--~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~  112 (454)
T TIGR03606        36 LWGPDN-QLWVTERATGKILRVNPET--GEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKEL  112 (454)
T ss_pred             EEcCCC-eEEEEEecCCEEEEEeCCC--CceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCc
Confidence            344554 5666554368999998665  33333221110   0 01234567788774     2234443321111000 


Q ss_pred             -ceeEEEEEECCCC--CccCcEEeeec-C----CceeeeEECCCCCEEEE
Q 008927          219 -STTEIVAIALNGQ--NIQEPKVLVSG-S----DFYAFPRMDPRGERMAW  260 (548)
Q Consensus       219 -~~~~l~~idl~~g--~~~~~~~L~~~-~----~~~~~p~~SPDGk~La~  260 (548)
                       ....|.++.++..  .....+.|..+ +    .+-...+|.|||+ |++
T Consensus       113 ~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYV  161 (454)
T TIGR03606       113 PNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYY  161 (454)
T ss_pred             cCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEE
Confidence             2457877776532  21113333322 1    1234567999997 543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase

Probab=84.79  E-value=1.2  Score=42.03  Aligned_cols=39  Identities=13%  Similarity=0.141  Sum_probs=29.1

Q ss_pred             CCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       494 ~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ..|+||++||-+....  .|....+.+ ++||.|+.+|+||.
T Consensus        12 ~~~~li~~hg~~~~~~--~~~~~~~~l-~~~~~v~~~d~~G~   50 (251)
T TIGR02427        12 GAPVLVFINSLGTDLR--MWDPVLPAL-TPDFRVLRYDKRGH   50 (251)
T ss_pred             CCCeEEEEcCcccchh--hHHHHHHHh-hcccEEEEecCCCC
Confidence            4589999999755443  445555666 47999999999985

Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.

>PRK07581 hypothetical protein; Validated

Probab=84.39  E-value=1.5  Score=44.60  Aligned_cols=40  Identities=10%  Similarity=-0.003  Sum_probs=27.2

Q ss_pred             CCcEEEEEccCccccccCccChHH---HHHHhcCcEEEEeCCCCC
Q 008927          494 KPPLLVKSHGGPTSEARGILNLSI---QYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       494 ~~Pliv~iHGGP~~~~~~~~~~~~---Q~~asrGyaVl~~NyRGS  535 (548)
                      +.|+||++||++.....  |.+.+   +.|...+|-|+.+|.||.
T Consensus        40 ~~~~vll~~~~~~~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G~   82 (339)
T PRK07581         40 KDNAILYPTWYSGTHQD--NEWLIGPGRALDPEKYFIIIPNMFGN   82 (339)
T ss_pred             CCCEEEEeCCCCCCccc--chhhccCCCccCcCceEEEEecCCCC
Confidence            45788888887654322  22221   357678999999999984

>COG4099 Predicted peptidase [General function prediction only]

Probab=84.35  E-value=1.7  Score=42.56  Aligned_cols=58  Identities=19%  Similarity=0.374  Sum_probs=37.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCC-cEEEEEccCccccccCcc----ChHHHHHHh--cCcEEEEeCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKP-PLLVKSHGGPTSEARGIL----NLSIQYWTS--RGWAFVDVNY  532 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~-Pliv~iHGGP~~~~~~~~----~~~~Q~~as--rGyaVl~~Ny  532 (548)
                      -|.++.-.||-|++  +.+  +++| ||+|+.||+-.......-    +...-.|++  -++.||.|.|
T Consensus       170 tgneLkYrly~Pkd--y~p--dkky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy  234 (387)
T COG4099         170 TGNELKYRLYTPKD--YAP--DKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQY  234 (387)
T ss_pred             cCceeeEEEecccc--cCC--CCccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEcccc
Confidence            58889999999964  653  7788 999999998654432211    011112222  2377888875

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=84.22  E-value=6.6  Score=41.06  Aligned_cols=79  Identities=13%  Similarity=0.101  Sum_probs=48.4

Q ss_pred             CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee--e
Q 008927          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--S  241 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~--~  241 (548)
                      .++.++++...  .....+-..    .....-..++|||..|+.-+.+.       .-.||+++.++..   ..++-  .
T Consensus       427 ~G~w~V~d~e~--~~lv~~~~d----~~~ls~v~ysp~G~~lAvgs~d~-------~iyiy~Vs~~g~~---y~r~~k~~  490 (626)
T KOG2106|consen  427 TGRWFVLDTET--QDLVTIHTD----NEQLSVVRYSPDGAFLAVGSHDN-------HIYIYRVSANGRK---YSRVGKCS  490 (626)
T ss_pred             cceEEEEeccc--ceeEEEEec----CCceEEEEEcCCCCEEEEecCCC-------eEEEEEECCCCcE---EEEeeeec
Confidence            46778888764  322222211    12355567999999877643331       3467777766654   34432  2


Q ss_pred             cCCceeeeEECCCCCEEE
Q 008927          242 GSDFYAFPRMDPRGERMA  259 (548)
Q Consensus       242 ~~~~~~~p~~SPDGk~La  259 (548)
                      + .+.....||+|++.|.
T Consensus       491 g-s~ithLDwS~Ds~~~~  507 (626)
T KOG2106|consen  491 G-SPITHLDWSSDSQFLV  507 (626)
T ss_pred             C-ceeEEeeecCCCceEE
Confidence            3 5678889999999765

>PRK10349 carboxylesterase BioH; Provisional

Probab=83.86  E-value=1  Score=43.57  Aligned_cols=40  Identities=18%  Similarity=0.086  Sum_probs=29.6

Q ss_pred             CCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       493 ~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +..|.||++||.+....  .|....+.|.. .|-|+.+|.||-
T Consensus        11 ~g~~~ivllHG~~~~~~--~w~~~~~~L~~-~~~vi~~Dl~G~   50 (256)
T PRK10349         11 QGNVHLVLLHGWGLNAE--VWRCIDEELSS-HFTLHLVDLPGF   50 (256)
T ss_pred             CCCCeEEEECCCCCChh--HHHHHHHHHhc-CCEEEEecCCCC
Confidence            34467999999765443  45666777764 599999999984

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=83.68  E-value=98  Score=36.32  Aligned_cols=42  Identities=17%  Similarity=0.165  Sum_probs=25.3

Q ss_pred             ccccCcceeeeeecCCCCEEEEEEE--eCC-eEEEEEEECCCCceEeec
Q 008927          352 WVFGINSYEIIQSHGEKNLIACSYR--QNG-RSYLGILDDFGHSLSLLD  397 (548)
Q Consensus       352 w~~~~~~~~~~~~~~d~~~l~~~~~--~~g-~~~L~~~dl~~g~~~~l~  397 (548)
                      |..+....+|-.   ||..+++++.  ..+ +..|.+++-+ |++....
T Consensus       208 ~dd~~~~ISWRG---DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS  252 (928)
T PF04762_consen  208 WDDGRVRISWRG---DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS  252 (928)
T ss_pred             cCCCceEEEECC---CCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc
Confidence            333445567764   6676666655  345 6778888765 6555443

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=83.61  E-value=45  Score=37.38  Aligned_cols=19  Identities=11%  Similarity=0.366  Sum_probs=15.8

Q ss_pred             CCEEEEEeCCCCeEEEEeCCC
Q 008927          154 GDTVIFSNYKDQRLYKHSIDS  174 (548)
Q Consensus       154 ~~~i~F~~~~~~~Ly~~~~~~  174 (548)
                      +..|+|..  .++|..+++.+
T Consensus       990 gt~LL~aq--g~~I~~lplng 1008 (1289)
T KOG1214|consen  990 GTFLLYAQ--GQQIGYLPLNG 1008 (1289)
T ss_pred             cceEEEec--cceEEEeecCc
Confidence            56788887  77899999986

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=83.23  E-value=43  Score=31.93  Aligned_cols=28  Identities=7%  Similarity=0.312  Sum_probs=21.0

Q ss_pred             CeeeEEECCEEEEEeCCCCeEEEEeCCC
Q 008927          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDS  174 (548)
Q Consensus       147 g~~~~~~~~~i~F~~~~~~~Ly~~~~~~  174 (548)
                      |..|..+.+.|+|++-..+.|.+.|...
T Consensus        19 gp~w~~~~~sLl~VDi~ag~v~r~D~~q   46 (310)
T KOG4499|consen   19 GPHWDVERQSLLYVDIEAGEVHRYDIEQ   46 (310)
T ss_pred             CCceEEecceEEEEEeccCceehhhhhh
Confidence            4567777788999987777777777765

>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase

Probab=82.47  E-value=2  Score=42.21  Aligned_cols=53  Identities=15%  Similarity=0.090  Sum_probs=35.7

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +|.+++.+....         +...|.||++||-+....  .|....+.|. ++|.|+.+|+||-
T Consensus        10 ~~~~~~~~~~~~---------~~~~~plvllHG~~~~~~--~w~~~~~~L~-~~~~vi~~Dl~G~   62 (276)
T TIGR02240        10 DGQSIRTAVRPG---------KEGLTPLLIFNGIGANLE--LVFPFIEALD-PDLEVIAFDVPGV   62 (276)
T ss_pred             CCcEEEEEEecC---------CCCCCcEEEEeCCCcchH--HHHHHHHHhc-cCceEEEECCCCC
Confidence            788888777532         111256799999654443  4555666664 5799999999985

This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.

>PRK06489 hypothetical protein; Provisional

Probab=82.37  E-value=2.8  Score=43.13  Aligned_cols=41  Identities=10%  Similarity=0.019  Sum_probs=26.2

Q ss_pred             CcEEEEEccCccccccCc-cChHHHH------HHhcCcEEEEeCCCCC
Q 008927          495 PPLLVKSHGGPTSEARGI-LNLSIQY------WTSRGWAFVDVNYGGS  535 (548)
Q Consensus       495 ~Pliv~iHGGP~~~~~~~-~~~~~Q~------~asrGyaVl~~NyRGS  535 (548)
                      -|.||++||++.+...+. ......+      +.+++|.|+.+|+||-
T Consensus        69 gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~Gh  116 (360)
T PRK06489         69 DNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGH  116 (360)
T ss_pred             CCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCC
Confidence            377999999987543221 0111111      2368999999999984

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=82.23  E-value=60  Score=34.94  Aligned_cols=69  Identities=14%  Similarity=0.147  Sum_probs=42.8

Q ss_pred             eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCee
Q 008927          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW  325 (548)
Q Consensus       246 ~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~  325 (548)
                      ....++||+.++|+.-..        .+.|.++|... +.    ...+...    -.....+|.|||.++++.+. .|.-
T Consensus       262 v~~ca~sp~E~kLvlGC~--------DgSiiLyD~~~-~~----t~~~ka~----~~P~~iaWHp~gai~~V~s~-qGel  323 (545)
T PF11768_consen  262 VICCARSPSEDKLVLGCE--------DGSIILYDTTR-GV----TLLAKAE----FIPTLIAWHPDGAIFVVGSE-QGEL  323 (545)
T ss_pred             ceEEecCcccceEEEEec--------CCeEEEEEcCC-Ce----eeeeeec----ccceEEEEcCCCcEEEEEcC-CceE
Confidence            455689999999886552        35688888763 32    2222211    33466899999997667655 5655


Q ss_pred             eEEEEec
Q 008927          326 NLHKWIE  332 (548)
Q Consensus       326 ~Ly~~d~  332 (548)
                      ++|=+-+
T Consensus       324 Q~FD~AL  330 (545)
T PF11768_consen  324 QCFDMAL  330 (545)
T ss_pred             EEEEeec
Confidence            5554433

>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function

Probab=82.20  E-value=0.7  Score=26.89  Aligned_cols=25  Identities=24%  Similarity=0.591  Sum_probs=20.6

Q ss_pred             ccCCCCCCCCCCCCCccccCCCCCC
Q 008927           52 ASTSPVPETYSATQDKITAPYGSWK   76 (548)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~g~w~   76 (548)
                      +.+||+|..+-..+.+.+.|.|.|.
T Consensus         5 tpaspapsdils~~pqs~rppgrwt   29 (29)
T PF05570_consen    5 TPASPAPSDILSSKPQSKRPPGRWT   29 (29)
T ss_pred             CCCCCCcHHHHhcCccccCCCCCCC
Confidence            4478888888888888999999993

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=82.04  E-value=79  Score=34.05  Aligned_cols=53  Identities=13%  Similarity=0.088  Sum_probs=30.3

Q ss_pred             eEEEEEEECCCCceE-eecCC---------Ccee-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          380 RSYLGILDDFGHSLS-LLDIP---------FTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       380 ~~~L~~~dl~~g~~~-~l~~~---------~~~~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      ...|+.+|+.+|+.. +...+         .... ..+...++.+ |+.+.   -..||.+|.++|+.
T Consensus       365 ~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v-~~g~~---dG~l~ald~~tG~~  428 (488)
T cd00216         365 KGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLV-FAGAA---DGYFRAFDATTGKE  428 (488)
T ss_pred             ceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeE-EEECC---CCeEEEEECCCCce
Confidence            457999999999754 11111         0011 1223345544 44432   36899999998873

The alignment model contains an 8-bladed beta-propeller.

>PRK02888 nitrous-oxide reductase; Validated

Probab=81.80  E-value=89  Score=34.48  Aligned_cols=50  Identities=12%  Similarity=0.183  Sum_probs=26.7

Q ss_pred             EEEEEEECCC----C-c-eEeecCCCcee-EeeeecCCEEEEEEecCCCCCeEEEEEcCC
Q 008927          381 SYLGILDDFG----H-S-LSLLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDD  433 (548)
Q Consensus       381 ~~L~~~dl~~----g-~-~~~l~~~~~~~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~  433 (548)
                      .++-++|..+    + + ...|..+..-. -.+++|++++++..-   ..+.+-++|.+.
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank---lS~tVSVIDv~k  352 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK---LSPTVTVIDVRK  352 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC---CCCcEEEEEChh
Confidence            3567888776    2 2 23344332111 124789998776543   234566677654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.79  E-value=31  Score=33.02  Aligned_cols=94  Identities=14%  Similarity=0.103  Sum_probs=51.3

Q ss_pred             EEeeecCCceeeeEECCCC-CEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEE
Q 008927          237 KVLVSGSDFYAFPRMDPRG-ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF  315 (548)
Q Consensus       237 ~~L~~~~~~~~~p~~SPDG-k~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~  315 (548)
                      +.|....|++...+|.|.- -...+++.-.     ....+.+...+.+.+.-+.+++...+    ..+....||.-|.++
T Consensus       201 ~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S-----qDg~viIwt~~~e~e~wk~tll~~f~----~~~w~vSWS~sGn~L  271 (299)
T KOG1332|consen  201 RTLEGHKDWVRDVAWAPSVGLPKSTIASCS-----QDGTVIIWTKDEEYEPWKKTLLEEFP----DVVWRVSWSLSGNIL  271 (299)
T ss_pred             hhhhhcchhhhhhhhccccCCCceeeEEec-----CCCcEEEEEecCccCcccccccccCC----cceEEEEEeccccEE
Confidence            4466667777777787752 2222222111     11233333333222211234444433    346778999999977


Q ss_pred             EEEeCCCCeeeEEEEeccCCeeEeec
Q 008927          316 FVTDRKNGFWNLHKWIESNNEVLAIY  341 (548)
Q Consensus       316 ~~sd~~~g~~~Ly~~d~~~g~~~~l~  341 (548)
                      .++.- ++...||+-+. .|+.+++.
T Consensus       272 aVs~G-dNkvtlwke~~-~Gkw~~v~  295 (299)
T KOG1332|consen  272 AVSGG-DNKVTLWKENV-DGKWEEVG  295 (299)
T ss_pred             EEecC-CcEEEEEEeCC-CCcEEEcc
Confidence            77765 66677888776 45666553

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=81.67  E-value=53  Score=34.65  Aligned_cols=134  Identities=10%  Similarity=0.045  Sum_probs=75.6

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      .|++..+.++-+...+|.+.+.|..|  ..|.  -...+....-..+..|||....|+.. -.-       ...|+.+|.
T Consensus       171 ~ys~skr~lL~~asd~G~VtlwDv~g--~sp~--~~~~~~HsAP~~gicfspsne~l~vs-VG~-------Dkki~~yD~  238 (673)
T KOG4378|consen  171 RYSPSKRFLLSIASDKGAVTLWDVQG--MSPI--FHASEAHSAPCRGICFSPSNEALLVS-VGY-------DKKINIYDI  238 (673)
T ss_pred             ecccccceeeEeeccCCeEEEEeccC--CCcc--cchhhhccCCcCcceecCCccceEEE-ecc-------cceEEEeec
Confidence            45666665555555567677778775  3332  21100001123467899987765442 221       146889998


Q ss_pred             CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      ...+.  ...|+-.. -.+..+|+++|-+|+ .. +      ...+|+.+|+.....  +...+...+    .++...+|
T Consensus       239 ~s~~s--~~~l~y~~-Plstvaf~~~G~~L~-aG-~------s~G~~i~YD~R~~k~--Pv~v~sah~----~sVt~vaf  301 (673)
T KOG4378|consen  239 RSQAS--TDRLTYSH-PLSTVAFSECGTYLC-AG-N------SKGELIAYDMRSTKA--PVAVRSAHD----ASVTRVAF  301 (673)
T ss_pred             ccccc--cceeeecC-CcceeeecCCceEEE-ee-c------CCceEEEEecccCCC--CceEeeecc----cceeEEEe
Confidence            76642  33454332 245678999998876 32 1      256899999985332  233333333    56777777


Q ss_pred             CcC
Q 008927          309 SSK  311 (548)
Q Consensus       309 spD  311 (548)
                      -|-
T Consensus       302 q~s  304 (673)
T KOG4378|consen  302 QPS  304 (673)
T ss_pred             eec
Confidence            554

>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase

Probab=81.60  E-value=2  Score=43.96  Aligned_cols=57  Identities=14%  Similarity=0.033  Sum_probs=35.1

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccC--------c-cChHH---HHHHhcCcEEEEeCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--------I-LNLSI---QYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~--------~-~~~~~---Q~~asrGyaVl~~NyRG  534 (548)
                      +|.+|+-..+-+.+       ....|.||++||=..+....        + |...+   ..|..++|.|+.+|+||
T Consensus        14 ~~~~~~y~~~g~~~-------~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G   82 (351)
T TIGR01392        14 SDVRVAYETYGTLN-------AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLG   82 (351)
T ss_pred             CCceEEEEeccccC-------CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCC
Confidence            56666666554422       11237899999966643211        1 22222   25667899999999999

This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.

>PLN02824 hydrolase, alpha/beta fold family protein

Probab=81.34  E-value=1.9  Score=42.76  Aligned_cols=38  Identities=16%  Similarity=0.107  Sum_probs=30.9

Q ss_pred             cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      |.||++||.+.+..  .|...++.|+.+ |.|+.+|.||..
T Consensus        30 ~~vlllHG~~~~~~--~w~~~~~~L~~~-~~vi~~DlpG~G   67 (294)
T PLN02824         30 PALVLVHGFGGNAD--HWRKNTPVLAKS-HRVYAIDLLGYG   67 (294)
T ss_pred             CeEEEECCCCCChh--HHHHHHHHHHhC-CeEEEEcCCCCC
Confidence            67899999987664  566677888876 699999999974

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=81.06  E-value=66  Score=32.57  Aligned_cols=237  Identities=11%  Similarity=-0.009  Sum_probs=0.0

Q ss_pred             EEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCc
Q 008927          157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (548)
Q Consensus       157 i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~  236 (548)
                      |+++..+++.|+..|..+  ++..+-..+   -.-...+..++..|+.|+-.+.+-.       -.||..+---..   .
T Consensus       122 ~v~~as~d~tikv~D~~t--g~~e~~LrG---Ht~sv~di~~~a~Gk~l~tcSsDl~-------~~LWd~~~~~~c---~  186 (406)
T KOG0295|consen  122 LVVSASEDATIKVFDTET--GELERSLRG---HTDSVFDISFDASGKYLATCSSDLS-------AKLWDFDTFFRC---I  186 (406)
T ss_pred             EEEEecCCceEEEEEccc--hhhhhhhhc---cccceeEEEEecCccEEEecCCccc-------hhheeHHHHHHH---H


Q ss_pred             EEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEE
Q 008927          237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF  316 (548)
Q Consensus       237 ~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~  316 (548)
                      +.+......++.+.+=|-|.+|+=.+.++.        |...+++ .|-  ....+.+..    +.+...+-..||.|+.
T Consensus       187 ks~~gh~h~vS~V~f~P~gd~ilS~srD~t--------ik~We~~-tg~--cv~t~~~h~----ewvr~v~v~~DGti~A  251 (406)
T KOG0295|consen  187 KSLIGHEHGVSSVFFLPLGDHILSCSRDNT--------IKAWECD-TGY--CVKTFPGHS----EWVRMVRVNQDGTIIA  251 (406)
T ss_pred             HHhcCcccceeeEEEEecCCeeeecccccc--------eeEEecc-cce--eEEeccCch----HhEEEEEecCCeeEEE


Q ss_pred             EEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeee------cCCCCEEEEEEEeCCeEEEEEEECCC
Q 008927          317 VTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQS------HGEKNLIACSYRQNGRSYLGILDDFG  390 (548)
Q Consensus       317 ~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~------~~d~~~l~~~~~~~g~~~L~~~dl~~  390 (548)
                      ..+. +..-.+|.+.  +++-+.+..   +...|.-..........|.      +.++..+++...+++.-.++  |+.+
T Consensus       252 s~s~-dqtl~vW~~~--t~~~k~~lR---~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w--dv~t  323 (406)
T KOG0295|consen  252 SCSN-DQTLRVWVVA--TKQCKAELR---EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW--DVST  323 (406)
T ss_pred             ecCC-CceEEEEEec--cchhhhhhh---ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE--eccC


Q ss_pred             CceE-eecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          391 HSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       391 g~~~-~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      |..- .|-.....+.++  ++.|++|+-.+..    ..|.++|+.++.
T Consensus       324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD----ktlrvwdl~~~~  367 (406)
T KOG0295|consen  324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCADD----KTLRVWDLKNLQ  367 (406)
T ss_pred             CeEEEEEecccceeeeeEEcCCCeEEEEEecC----CcEEEEEeccce

>PRK03204 haloalkane dehalogenase; Provisional

Probab=81.05  E-value=1.2  Score=44.11  Aligned_cols=37  Identities=24%  Similarity=0.281  Sum_probs=26.6

Q ss_pred             cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      |.||++||.|...  ..|......|. ++|.|+.+|+||.
T Consensus        35 ~~iv~lHG~~~~~--~~~~~~~~~l~-~~~~vi~~D~~G~   71 (286)
T PRK03204         35 PPILLCHGNPTWS--FLYRDIIVALR-DRFRCVAPDYLGF   71 (286)
T ss_pred             CEEEEECCCCccH--HHHHHHHHHHh-CCcEEEEECCCCC
Confidence            6789999998433  23444445554 5699999999984

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=80.98  E-value=62  Score=32.21  Aligned_cols=102  Identities=15%  Similarity=0.217  Sum_probs=57.7

Q ss_pred             eeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceE
Q 008927          196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL  275 (548)
Q Consensus       196 ~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L  275 (548)
                      .+|++|+..|+...+.+       .-.||...-..- ......|.+.........|+|.+.+|+=.+  ++    .+..+
T Consensus        16 hAwn~drt~iAv~~~~~-------evhiy~~~~~~~-w~~~htls~Hd~~vtgvdWap~snrIvtcs--~d----rnayV   81 (361)
T KOG1523|consen   16 HAWNSDRTQIAVSPNNH-------EVHIYSMLGADL-WEPAHTLSEHDKIVTGVDWAPKSNRIVTCS--HD----RNAYV   81 (361)
T ss_pred             eeecCCCceEEeccCCc-------eEEEEEecCCCC-ceeceehhhhCcceeEEeecCCCCceeEcc--CC----CCccc
Confidence            46999999887764443       235665543330 111344555555566789999999997444  22    12334


Q ss_pred             EEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEE
Q 008927          276 WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV  317 (548)
Q Consensus       276 ~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~  317 (548)
                      |  ....+|++.....|-.-.    .......|+|.+..+.+
T Consensus        82 w--~~~~~~~WkptlvLlRiN----rAAt~V~WsP~enkFAV  117 (361)
T KOG1523|consen   82 W--TQPSGGTWKPTLVLLRIN----RAATCVKWSPKENKFAV  117 (361)
T ss_pred             c--ccCCCCeeccceeEEEec----cceeeEeecCcCceEEe
Confidence            4  442356654433333222    45667899999874433

>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]

Probab=80.85  E-value=4.2  Score=42.33  Aligned_cols=74  Identities=23%  Similarity=0.179  Sum_probs=51.2

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccCh----HHHHHHhcCcEEEEeCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL----SIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~----~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +.|.....+. ||- |-.+=-.|..       +++.|.|++.||==.+.+.+..+.    ..=.|+.+||=|-.-|.|| 
T Consensus        47 ~~E~h~V~T~-DgY-iL~lhRIp~~-------~~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG-  116 (403)
T KOG2624|consen   47 PVEEHEVTTE-DGY-ILTLHRIPRG-------KKKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG-  116 (403)
T ss_pred             ceEEEEEEcc-CCe-EEEEeeecCC-------CCCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC-
Confidence            5678888887 996 3333333432       146699999999655555544442    1235889999999999999 


Q ss_pred             CCCChhhh
Q 008927          536 TGLSSVPS  543 (548)
Q Consensus       536 tGyG~~f~  543 (548)
                      +-|.|+..
T Consensus       117 n~ySr~h~  124 (403)
T KOG2624|consen  117 NTYSRKHK  124 (403)
T ss_pred             cccchhhc
Confidence            88988754

>PHA03098 kelch-like protein; Provisional

Probab=80.72  E-value=90  Score=33.90  Aligned_cols=190  Identities=7%  Similarity=-0.077  Sum_probs=93.1

Q ss_pred             eeEEEEEECCCCCccCcEEeeecC---CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCC
Q 008927          220 TTEIVAIALNGQNIQEPKVLVSGS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD  296 (548)
Q Consensus       220 ~~~l~~idl~~g~~~~~~~L~~~~---~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~  296 (548)
                      ..+++.+|+.+.+   -..+....   ...+.  ..-+|+ |..+. ...+. -....++.+|... +.+.   .+..-+
T Consensus       310 ~~~v~~yd~~~~~---W~~~~~~~~~R~~~~~--~~~~~~-lyv~G-G~~~~-~~~~~v~~yd~~~-~~W~---~~~~lp  377 (534)
T PHA03098        310 VNSVVSYDTKTKS---WNKVPELIYPRKNPGV--TVFNNR-IYVIG-GIYNS-ISLNTVESWKPGE-SKWR---EEPPLI  377 (534)
T ss_pred             eccEEEEeCCCCe---eeECCCCCcccccceE--EEECCE-EEEEe-CCCCC-EecceEEEEcCCC-Ccee---eCCCcC
Confidence            4579999998887   44443221   11222  222444 43333 11110 0134677788763 4432   222211


Q ss_pred             CCcccCCcCceECcCCcEEEEEeC---CCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEE
Q 008927          297 PTIVESPTEPKWSSKGELFFVTDR---KNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIAC  373 (548)
Q Consensus       297 ~~~~~~~~~~~wspDG~L~~~sd~---~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~  373 (548)
                      ..  .. ....-.-+|+||++.-.   +.....++++|+.+++.+.+.+...    +..  +. ....     -++.||+
T Consensus       378 ~~--r~-~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~----~r~--~~-~~~~-----~~~~iyv  442 (534)
T PHA03098        378 FP--RY-NPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI----SHY--GG-CAIY-----HDGKIYV  442 (534)
T ss_pred             cC--Cc-cceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc----ccc--Cc-eEEE-----ECCEEEE
Confidence            00  11 11122346677777422   1123568999998888877653211    111  11 1111     2455655


Q ss_pred             EEEeC------CeEEEEEEECCCCceEeecC-CCcee-EeeeecCCEEEEEEecCC--CCCeEEEEEcCCCce
Q 008927          374 SYRQN------GRSYLGILDDFGHSLSLLDI-PFTDI-DNITLGNDCLFVEGASGV--EPSSVAKVTLDDHKL  436 (548)
Q Consensus       374 ~~~~~------g~~~L~~~dl~~g~~~~l~~-~~~~~-~~~s~d~~~l~~~~ss~~--~p~~l~~~d~~~~~~  436 (548)
                      ..-..      ....++++|+++++++.+.. +.... ..+..-++.|++++....  ....++.+|+++.+.
T Consensus       443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence            42111      13458999999999988753 21111 112223566776664321  145788899877764

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=80.44  E-value=28  Score=34.53  Aligned_cols=105  Identities=15%  Similarity=0.117  Sum_probs=66.3

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCC-CceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCcc
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDS-SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ  234 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~-~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~  234 (548)
                      .|+|-..+.|+|=++++..... .|.-|-..    ...++-+.+.-+|..|+--++..        .=|-+.|..+|+. 
T Consensus       150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH----~s~Iacv~Ln~~Gt~vATaStkG--------TLIRIFdt~~g~~-  216 (346)
T KOG2111|consen  150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAH----DSDIACVALNLQGTLVATASTKG--------TLIRIFDTEDGTL-  216 (346)
T ss_pred             EEEcCCCccceEEEEEhhhcCcCCceEEEcc----cCceeEEEEcCCccEEEEeccCc--------EEEEEEEcCCCcE-
Confidence            5899887789999999875211 12333332    23455567888998776643321        3455668888762 


Q ss_pred             CcEEeeecCCc--eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC
Q 008927          235 EPKVLVSGSDF--YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE  282 (548)
Q Consensus       235 ~~~~L~~~~~~--~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~  282 (548)
                       ...+..|.+.  .....||||+++||..+ +       ...|++..+..
T Consensus       217 -l~E~RRG~d~A~iy~iaFSp~~s~LavsS-d-------KgTlHiF~l~~  257 (346)
T KOG2111|consen  217 -LQELRRGVDRADIYCIAFSPNSSWLAVSS-D-------KGTLHIFSLRD  257 (346)
T ss_pred             -eeeeecCCchheEEEEEeCCCccEEEEEc-C-------CCeEEEEEeec
Confidence             3334444432  34568999999999554 3       45688888863

>PRK10673 acyl-CoA esterase; Provisional

Probab=80.36  E-value=2.3  Score=40.88  Aligned_cols=39  Identities=15%  Similarity=0.087  Sum_probs=27.8

Q ss_pred             CCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       494 ~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ..|.||++||.+....  .|......| +++|.|+.+|.||.
T Consensus        15 ~~~~iv~lhG~~~~~~--~~~~~~~~l-~~~~~vi~~D~~G~   53 (255)
T PRK10673         15 NNSPIVLVHGLFGSLD--NLGVLARDL-VNDHDIIQVDMRNH   53 (255)
T ss_pred             CCCCEEEECCCCCchh--HHHHHHHHH-hhCCeEEEECCCCC
Confidence            3488999999977653  343344444 46799999999984

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=80.10  E-value=59  Score=33.45  Aligned_cols=100  Identities=10%  Similarity=0.060  Sum_probs=59.8

Q ss_pred             EEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCC--CCCcc
Q 008927          223 IVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF--DPTIV  300 (548)
Q Consensus       223 l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~--~~~~~  300 (548)
                      |-.+|..++.   .++-.+..+.+.....|+||..|.-.+   +     ...|-++|+... ++  ..+....  ...  
T Consensus       324 vRfwD~Rs~~---~~~sv~~gg~vtSl~ls~~g~~lLsss---R-----Ddtl~viDlRt~-eI--~~~~sA~g~k~a--  387 (459)
T KOG0288|consen  324 VRFWDIRSAD---KTRSVPLGGRVTSLDLSMDGLELLSSS---R-----DDTLKVIDLRTK-EI--RQTFSAEGFKCA--  387 (459)
T ss_pred             eEEEeccCCc---eeeEeecCcceeeEeeccCCeEEeeec---C-----CCceeeeecccc-cE--EEEeeccccccc--
Confidence            6667777766   555555555678889999999876332   1     134667777632 21  1112111  000  


Q ss_pred             cCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeec
Q 008927          301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (548)
Q Consensus       301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~  341 (548)
                      .......|||||+++..... +|  .||.++..+|+.+.+.
T Consensus       388 sDwtrvvfSpd~~YvaAGS~-dg--sv~iW~v~tgKlE~~l  425 (459)
T KOG0288|consen  388 SDWTRVVFSPDGSYVAAGSA-DG--SVYIWSVFTGKLEKVL  425 (459)
T ss_pred             cccceeEECCCCceeeeccC-CC--cEEEEEccCceEEEEe
Confidence            12456789999985544222 23  5888888899887665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	548
3azp_A	662	Crystal Structure Of Puromycin Hydrolase S511a Muta		3e-48
3azo_A	662	Crystal Structure Of Puromycin Hydrolase Length = 6		4e-47

>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant Length = 662

Iteration: 1
 Score =  189 bits (481), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 147/483 (30%), Positives = 229/483 (47%), Gaps = 34/483 (7%)
Query: 69  TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP 128
           TAPYG+W+SP+ A +V+  S R       G   + W+  RP EAGR  LV+  A   +E 
Sbjct: 4   TAPYGAWQSPIDAALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGAEES 62
Query: 129 SDITPKEYAVRTTAQEYGG----GAFR-IFGDTVIFSNYKDQRLYKHSIDSKDSS-PLPI 182
           +   P  + VR    EY G    G  R   G  ++F+++ DQRLY    D+   + P P+
Sbjct: 63  A--LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPL 120
Query: 183 TP--DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE-IVAIALNGQNIQEPKVL 239
           TP    G  L  +AD +  P       + E+   +  +     + A+ L+G    +   +
Sbjct: 121 TPVSAVGGGL-RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179
Query: 240 VSGSD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCVAG 294
              SD    F   PR+ P G +  W+ W HP MPW+  EL    ++E+G     R  + G
Sbjct: 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239
Query: 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354
            +  I ++    +W+  G L   TDR  G+WNLH+   +      +   + EF+ PLW  
Sbjct: 240 PEEAIAQA----EWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTP 294
Query: 355 GINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLF 414
           G+  +  + +     LIA  +   G + LGILD     L     P+T+    TL      
Sbjct: 295 GMRWFAPLAN----GLIAVVH-GKGAAVLGILDPESGELVDAAGPWTEW-AATLTVSGTR 348
Query: 415 VEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQK 474
             G +    ++   V LD    +A   + + +   D +   +Y+  P++  F T   G++
Sbjct: 349 AVGVAASPRTAYEVVELDTVTGRA---RTIGARHTDPVD-PAYYPEPQIRTF-TAPDGRE 403
Query: 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534
            +A+ YPP +P +    +E PP +V +HGGPTS    +L+L + Y+TSRG    DVNYGG
Sbjct: 404 IHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGG 463
Query: 535 STG 537
           STG
Sbjct: 464 STG 466

>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase Length = 662

Iteration: 1
 Score =  186 bits (471), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 147/483 (30%), Positives = 227/483 (46%), Gaps = 34/483 (7%)
Query: 69  TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP 128
           TAPYG+W+SP+ A +V+  S R       G   + W+  RP EAGR  LV+  A   +E 
Sbjct: 4   TAPYGAWQSPIDAALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGAEES 62
Query: 129 SDITPKEYAVRTTAQEYGG----GAFR-IFGDTVIFSNYKDQRLYKHSIDSKDSS-PLPI 182
           +   P  + VR    EY G    G  R   G  ++F+++ DQRLY    D+   + P P+
Sbjct: 63  A--LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPL 120
Query: 183 TP--DYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL 239
           TP    G  L  +AD +  P R   +    E   +   +    + A+ L+G    +   +
Sbjct: 121 TPVSAVGGGL-RWADPVLLPERGEVWCXAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179
Query: 240 VSGSD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCVAG 294
              SD    F   PR+ P G +  W+ W HP  PW+  EL    ++E+G     R  + G
Sbjct: 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRXPWEGTELKTARVTEDGRFADTRTLLGG 239
Query: 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354
            +  I ++    +W+  G L   TDR  G+WNLH+   +      +   + EF+ PLW  
Sbjct: 240 PEEAIAQA----EWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTP 294
Query: 355 GINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLF 414
           G   +  + +     LIA  +   G + LGILD     L     P+T+    TL      
Sbjct: 295 GXRWFAPLAN----GLIAVVH-GKGAAVLGILDPESGELVDAAGPWTEW-AATLTVSGTR 348
Query: 415 VEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQK 474
             G +    ++   V LD    +A   + + +   D +   +Y+  P++  F T   G++
Sbjct: 349 AVGVAASPRTAYEVVELDTVTGRA---RTIGARHTDPVD-PAYYPEPQIRTF-TAPDGRE 403
Query: 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534
            +A+ YPP +P +    +E PP +V +HGGPTS    +L+L + Y+TSRG    DVNYGG
Sbjct: 404 IHAHIYPPHSPDFTGPADELPPYVVXAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGG 463
Query: 535 STG 537
           STG
Sbjct: 464 STG 466

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	548
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	1e-133
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	1e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3fcy_A	346	Xylan esterase 1; alpha/beta hydrolase, carbohydra	3e-04
1l7a_A	318	Cephalosporin C deacetylase; structural genomics,	6e-04

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662

 Score =  401 bits (1032), Expect = e-133
 Identities = 132/482 (27%), Positives = 214/482 (44%), Gaps = 32/482 (6%)

Query: 69  TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP 128
           TAPYG+W+SP+ A +V+  S R       G   + W+  RP EAGR  LV+  A      
Sbjct: 4   TAPYGAWQSPIDAALVASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRA--DGAE 60

Query: 129 SDITPKEYAVRTTAQEYGGGAFRIF-----GDTVIFSNYKDQRLYKHSIDSK-DSSPLPI 182
               P  + VR    EY G  +        G  ++F+++ DQRLY    D+   + P P+
Sbjct: 61  ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPL 120

Query: 183 TPDYGEP-LVSYADGIFDPRFNRYVTVREDRRQDAL-NSTTEIVAIALNGQNIQEPK--- 237
           TP       + +AD +  P       + E+   +   +    + A+ L+G    +     
Sbjct: 121 TPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR 180

Query: 238 -VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD 296
            +      F   PR+ P G +  W+ W HP MPW+  EL    ++E+G       + G  
Sbjct: 181 ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240

Query: 297 PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGI 356
               E+  + +W+  G L   TDR  G+WNLH+   +      +   + EF+ PLW  G+
Sbjct: 241 E---EAIAQAEWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGM 296

Query: 357 NSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDN-ITLGNDCLFV 415
             +  + +      +       G + LGILD     L     P+T+    +T+       
Sbjct: 297 RWFAPLANG-----LIAVVHGKGAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVG 351

Query: 416 EGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKA 475
             AS      V ++     + +      + +   D +   +Y+  P++  F     G++ 
Sbjct: 352 VAASPRTAYEVVELDTVTGRAR-----TIGARHTDPVD-PAYYPEPQIRTFTAP-DGREI 404

Query: 476 YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535
           +A+ YPP +P +    +E PP +V +HGGPTS    +L+L + Y+TSRG    DVNYGGS
Sbjct: 405 HAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGGS 464

Query: 536 TG 537
           TG
Sbjct: 465 TG 466

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582

 Score =  112 bits (282), Expect = 1e-26
 Identities = 54/341 (15%), Positives = 102/341 (29%), Gaps = 48/341 (14%)

Query: 199 DPRFNRYVTVREDRRQDALNSTTE--IVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256
             +  R ++  +          TE  +   AL+G      + L     F      D RG+
Sbjct: 108 AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGG---GLRELARLPGFGFVS--DIRGD 162

Query: 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 316
            +A + +        +  L+      +G +         +     S +    S   ++  
Sbjct: 163 LIAGLGFF----GGGRVSLFT-SNLSSGGLRV---FDSGE----GSFSSASISPGMKVTA 210

Query: 317 VTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 376
             +       L      +  V  +     +FS       I        +     +A   R
Sbjct: 211 GLETA-REARLVTVDPRDGSVEDLELPSKDFS-SYRPTAITWL----GYLPDGRLAVVAR 264

Query: 377 QNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436
           + GRS + I  +       ++ P  +   + L    L     S   P  +  V+L   + 
Sbjct: 265 REGRSAVFIDGE------RVEAPQGNHGRVVLWRGKLVTSHTSLSTPPRI--VSLPSGE- 315

Query: 437 KAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPP 496
                 ++    P+ L+     +   L+   +   G +   Y                 P
Sbjct: 316 -----PLLEGGLPEDLRRS--IAGSRLVWVESF-DGSRVPTYVLES------GRAPTPGP 361

Query: 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537
            +V  HGGP +E     +       + G+  V  NY GSTG
Sbjct: 362 TVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTG 402

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 50/299 (16%), Positives = 97/299 (32%), Gaps = 67/299 (22%)

Query: 264 HHPNMPWDKAELWVGYISENGD---VYKRVCVAGFDPTIVESPTEPKWSSK--GELFFVT 318
           HH +M ++  E    Y     D   V++   V  FD   V+   +   S +    +    
Sbjct: 3   HHHHMDFETGEHQYQY----KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58

Query: 319 DRKNG----FWNLHKWIESNNEVLAIY---SLDAEFSRPLWVFGINSYEIIQSHGEKNLI 371
           D  +G    FW L   +    E++  +    L   +    ++      E  Q     +++
Sbjct: 59  DAVSGTLRLFWTL---LSKQEEMVQKFVEEVLRINYK---FLMSPIKTEQRQ----PSMM 108

Query: 372 ACSYRQNGRSYLGILDDFGHSLSLLDI----PFTDIDNITLG---NDCLFVEGASGVEPS 424
              Y          L +     +  ++    P+  +    L       + ++G  G   +
Sbjct: 109 TRMYI----EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 425 SVAKVTLDDHKLKAV-DFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPS 483
            VA      +K++   DFK+ W      L  K+  S   ++E       QK      P  
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFW------LNLKNCNSPETVLE-----MLQKLLYQIDPNW 213

Query: 484 NPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQY----------WTSRGW-AFVDVN 531
               ++       L + S     +E R +L     Y            ++ W AF +++
Sbjct: 214 TS--RSDHSSNIKLRIHS---IQAELRRLLKSK-PYENCLLVLLNVQNAKAWNAF-NLS 265

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 76/570 (13%), Positives = 150/570 (26%), Gaps = 176/570 (30%)

Query: 12  LTRFSASSSSASINFK-YIFSRRTVFTAS---PKRQKQRGCKIMASTSPVPETYSATQDK 67
           ++         S+  + YI  R  ++  +    K    R            + Y   +  
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR-----------LQPYLKLRQA 143

Query: 68  IT----APY-------GSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGV 116
           +     A         GS K+ +  DV    S ++          + WL  +   +   V
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCL--SYKVQCKMDFK---IFWLNLKNCNSPETV 198

Query: 117 LVK------EPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170
           L        +        SD +        + Q                      + Y++
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE-------------LRRLLKSKPYEN 245

Query: 171 SI----DSKDSSP----------LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDA 216
            +    + +++            L  T           D +          +  D     
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRF-----KQVTDFL---SAATTTHISLDHHSMT 297

Query: 217 LNS--TTEIVAIALNGQNIQEPKVLVSGSDFYA--FPRMDPRGERMAWIEWHHPNMPWDK 272
           L       ++   L+ +    P+ +++ +            R     W  W H N   DK
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI-RDGLATWDNWKHVNC--DK 354

Query: 273 A----ELWVGYIS--ENGDVYKRVCVAGFD-----PTIV-------ESPTEPKWSSKGEL 314
                E  +  +   E   ++ R+ V  F      PTI+          ++        +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLSLIWFDVIKSDV------MV 406

Query: 315 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIAC- 373
                 K     + K        ++I S+  E    L     N Y +   H  ++++   
Sbjct: 407 VVNKLHKYSL--VEKQ--PKESTISIPSIYLELKVKL----ENEYAL---H--RSIVDHY 453

Query: 374 ----SYRQNGRSYLGILDD-----FGHSLSLLDIP--FTDIDNITLGNDCLFVEGASGVE 422
               ++  +       LD       GH L  ++ P   T    + L  D  F+E      
Sbjct: 454 NIPKTFDSDDLI-PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--DFRFLE------ 504

Query: 423 PSSVAKVTLDDHKLKAVDFKVVWSSSPDTL----KYKSYFS---------LPELIEFPTE 469
                K+  D     A        S  +TL     YK Y           +  +++F   
Sbjct: 505 ----QKIRHDSTAWNAS------GSILNTLQQLKFYKPYICDNDPKYERLVNAILDF--- 551

Query: 470 VPGQKAYAYYYP-----------PSNPIYQ 488
           +P  +                      I++
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAIFE 581

>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 15/109 (13%)

Query: 435 KLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEK 494
           ++++VD K+    S   + +   +     + F   V G + +A Y  P         E K
Sbjct: 60  EMRSVDPKIELKESSFQVSFAECY----DLYFTG-VRGARIHAKYIKPKT-------EGK 107

Query: 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSVPS 543
            P L++ HG     +          + + G+  V ++  G  G S    
Sbjct: 108 HPALIRFHGYS---SNSGDWNDKLNYVAAGFTVVAMDVRGQGGQSQDVG 153

>1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 10/85 (11%)

Query: 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW 520
              + + +     +   +Y  P         E   P +VK HG     +       +  W
Sbjct: 56  VYRLTYKS-FGNARITGWYAVPDK-------EGPHPAIVKYHGYN--ASYDGEIHEMVNW 105

Query: 521 TSRGWAFVDVNYGGSTGLSSVPSTS 545
              G+A   +   G         + 
Sbjct: 106 ALHGYATFGMLVRGQQRSEDTSISP 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	548
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	100.0
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	100.0
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	100.0
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	100.0
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	100.0
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	100.0
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	100.0
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	100.0
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	100.0
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	100.0
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	100.0
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	100.0
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	99.93
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.89
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.87
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.85
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.84
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.82
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.82
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.79
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.74
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.7
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.7
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.69
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.67
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.67
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.66
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.66
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.65
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.65
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.65
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.62
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.62
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.59
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.57
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.54
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	99.54
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.52
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.46
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.46
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.41
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.39
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.34
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.3
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.29
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.28
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.27
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.23
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.23
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.22
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.19
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.18
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.14
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.11
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.08
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.06
4ao6_A	259	Esterase; hydrolase, thermo label; 1.60A {Unidenti	99.06
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.02
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.96
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.91
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.88
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.87
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.86
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.86
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.86
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.85
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.85
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.85
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.84
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.8
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.78
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.76
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.76
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.72
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.71
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.71
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.71
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.71
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.7
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.7
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.69
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.69
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.68
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.67
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.67
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.66
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.65
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.65
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.63
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.63
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.63
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.62
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.62
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.61
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.6
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.6
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.6
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.59
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.59
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.58
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.57
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.57
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.56
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.56
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.56
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.55
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.55
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.55
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.51
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.5
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.5
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.48
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.48
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.48
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.48
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.46
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.46
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.43
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.42
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.41
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.41
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.41
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.4
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.4
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.38
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.37
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.37
3nuz_A	398	Putative acetyl xylan esterase; structural genomic	98.37
2b9v_A	652	Alpha-amino acid ester hydrolase; catalytic triad,	98.37
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.36
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.36
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.36
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.35
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.35
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.34
1vlq_A	337	Acetyl xylan esterase; TM0077, structural genomics	98.34
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.34
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.33
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.32
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.32
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.32
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.32
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.32
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.31
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.3
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.29
1mpx_A	615	Alpha-amino acid ester hydrolase; alpha/beta hydro	98.29
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.28
3trd_A	208	Alpha/beta hydrolase; cellular processes; 1.50A {C	98.26
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.26
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.26
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.25
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.25
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.25
3ga7_A	326	Acetyl esterase; phosphoserine, IDP00896, hydrolas	98.23
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.22
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.22
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.22
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.2
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.17
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.17
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	98.17
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.17
2hm7_A	310	Carboxylesterase; alpha/beta hydrolase fold, hydro	98.16
2fuk_A	220	XC6422 protein; A/B hydrolase, structural genomics	98.16
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.14
2jbw_A	386	Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine	98.14
1gkl_A	297	Endo-1,4-beta-xylanase Y; hydrolase, esterase fami	98.14
2wir_A	313	Pesta, alpha/beta hydrolase fold-3 domain protein;	98.12
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.12
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.12
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.11
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.11
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.11
3g8y_A	391	SUSD/RAGB-associated esterase-like protein; struct	98.11
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.1
3i2k_A	587	Cocaine esterase; alpha/beta hydrolase, hydrolase;	98.09
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.09
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.09
2pm7_B	297	Protein transport protein SEC13, protein transport	98.08
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.07
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.07
3ain_A	323	303AA long hypothetical esterase; carboxylesterase	98.06
3iii_A	560	COCE/NOND family hydrolase; structural genomics, c	98.06
3qh4_A	317	Esterase LIPW; structural genomics, ssgcid, seattl	98.06
1l7a_A	318	Cephalosporin C deacetylase; structural genomics,	98.05
3fcx_A	282	FGH, esterase D, S-formylglutathione hydrolase; re	98.05
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.05
1jkm_A	361	Brefeldin A esterase; serine hydrolase, degradatio	98.04
3fcy_A	346	Xylan esterase 1; alpha/beta hydrolase, carbohydra	98.04
3doh_A	380	Esterase; alpha-beta hydrolase, beta sheet; 2.60A	98.04
3ebl_A	365	Gibberellin receptor GID1; alpha/beta hydrolase, l	98.03
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.03
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.03
3f67_A	241	Putative dienelactone hydrolase; alpha-beta-alpha	98.02
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.01
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.0
2c7b_A	311	Carboxylesterase, ESTE1; carboxyesterase, thermoph	98.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.99
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.99
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.98
2hdw_A	367	Hypothetical protein PA2218; alpha/beta hydrolase	97.98
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.98
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.97
1lzl_A	323	Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod	97.95
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.95
3hxk_A	276	Sugar hydrolase; alpha-beta protein., structural g	97.94
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.94
2o2g_A	223	Dienelactone hydrolase; YP_324580.1, structural ge	97.94
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.92
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.92
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	97.91
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.91
2pm7_B	297	Protein transport protein SEC13, protein transport	97.9
3bjr_A	283	Putative carboxylesterase; structural genomics, jo	97.9
3h2g_A	397	Esterase; xanthomonas oryzae PV. oryzae, cell WALL	97.9
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.9
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.9
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.89
1zi8_A	236	Carboxymethylenebutenolidase; alpha and beta prote	97.89
2i3d_A	249	AGR_C_3351P, hypothetical protein ATU1826; structu	97.89
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.86
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.85
3fak_A	322	Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc	97.85
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.84
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.84
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.84
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.83
2qm0_A	275	BES; alpha-beta structure, structural genomics, PS	97.83
3bxp_A	277	Putative lipase/esterase; putative carboxylesteras	97.82
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.82
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.82
4e15_A	303	Kynurenine formamidase; alpha/beta hydrolase fold,	97.81
2wtm_A	251	EST1E; hydrolase; 1.60A {Clostridium proteoclastic	97.8
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.8
3ls2_A	280	S-formylglutathione hydrolase; psychrophilic organ	97.79
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.76
3jro_A	753	Fusion protein of protein transport protein SEC13	97.76
3pfb_A	270	Cinnamoyl esterase; alpha/beta hydrolase fold, hyd	97.76
2o7r_A	338	CXE carboxylesterase; alpha/beta hydrolase; 1.40A	97.75
4b6g_A	283	Putative esterase; hydrolase, formaldehyde detoxif	97.75
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.75
3h04_A	275	Uncharacterized protein; protein with unknown func	97.74
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.73
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.72
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.71
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.69
3k2i_A	422	Acyl-coenzyme A thioesterase 4; alpha/beta hydrola	97.69
3hlk_A	446	Acyl-coenzyme A thioesterase 2, mitochondrial; alp	97.66
2zsh_A	351	Probable gibberellin receptor GID1L1; plant hormon	97.66
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.65
3jro_A	753	Fusion protein of protein transport protein SEC13	97.64
4ezi_A	377	Uncharacterized protein; alpha-beta hydrolases fol	97.63
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.63
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.62
3ksr_A	290	Putative serine hydrolase; catalytic triad, struct	97.61
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	97.61
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.61
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.6
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.6
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.6
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.6
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.58
2uz0_A	263	Esterase, tributyrin esterase; alpha/beta hydrolas	97.58
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.57
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.56
1jjf_A	268	Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x	97.56
2pbl_A	262	Putative esterase/lipase/thioesterase; alpha/beta-	97.56
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.55
3d0k_A	304	Putative poly(3-hydroxybutyrate) depolymerase LPQ;	97.55
1sfr_A	304	Antigen 85-A; alpha/beta hydrolase, structural gen	97.53
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.52
3mve_A	415	FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/	97.51
3hju_A	342	Monoglyceride lipase; alpha/beta hydrolase, hydrol	97.51
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.5
3pe6_A	303	Monoglyceride lipase; alpha-beta hydrolase fold, 2	97.5
3i6y_A	280	Esterase APC40077; lipase, structural genomics, PS	97.49
1r88_A	280	MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP	97.49
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.48
3bdi_A	207	Uncharacterized protein TA0194; NP_393672.1, predi	97.48
1qe3_A	489	PNB esterase, para-nitrobenzyl esterase; alpha-bet	97.48
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.47
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.46
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.45
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.45
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.43
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.43
1jji_A	311	Carboxylesterase; alpha-beta hydrolase fold, hydro	97.43
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.41
2h7c_A	542	Liver carboxylesterase 1; enzyme, cholesteryl este	97.4
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.4
1tht_A	305	Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.	97.4
1k8q_A	377	Triacylglycerol lipase, gastric; APHA beta hydrola	97.39
3e4d_A	278	Esterase D; S-formylglutathione hydrolase, hydrola	97.38
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.35
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.33
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.32
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.31
3llc_A	270	Putative hydrolase; structural genomics, joint cen	97.29
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.26
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.23
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.21
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.21
2ha2_A	543	ACHE, acetylcholinesterase; hydrolase fold, serine	97.2
3d7r_A	326	Esterase; alpha/beta fold, hydrolase; 2.01A {Staph	97.18
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.15
4f0j_A	315	Probable hydrolytic enzyme; alpha/beta hydrolase f	97.12
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.1
1imj_A	210	CIB, CCG1-interacting factor B; alpha/beta hydrola	97.1
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.09
1ukc_A	522	ESTA, esterase; fungi, A/B hydrolase fold, acetylc	97.08
2ogt_A	498	Thermostable carboxylesterase EST50; alpha/beta hy	97.08
3d59_A	383	Platelet-activating factor acetylhydrolase; secret	97.06
3fnb_A	405	Acylaminoacyl peptidase SMU_737; alpha-beta-alpha	97.06
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.02
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.02
2fx5_A	258	Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse	97.02
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	97.01
3c8d_A	403	Enterochelin esterase; alpha-beta-alpha sandwich,	96.98
1vkh_A	273	Putative serine hydrolase; structural genomics, jo	96.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.96
1lns_A	763	X-prolyl dipeptidyl aminopetidase; alpha beta hydr	96.95
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	96.93
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	96.92
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.91
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.87
3k6k_A	322	Esterase/lipase; alpha/beta hydrolase fold; 2.20A	96.86
1jfr_A	262	Lipase; serine hydrolase; 1.90A {Streptomyces exfo	96.85
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.81
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.8
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.79
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	96.78
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.77
2qru_A	274	Uncharacterized protein; alpha/beta-hydrolase, str	96.74
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.73
3qit_A	286	CURM TE, polyketide synthase; thioesterase, alpha/	96.68
1ea5_A	537	ACHE, acetylcholinesterase; hydrolase, serine hydr	96.65
3vis_A	306	Esterase; alpha/beta-hydrolase fold, polyethylene	96.65
1dx4_A	585	ACHE, acetylcholinesterase; hydrolase, serine este	96.62
1p0i_A	529	Cholinesterase; serine hydrolase, butyrate, hydrol	96.59
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.51
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	96.49
2qe8_A	343	Uncharacterized protein; structural genomics, join	96.49
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	96.41
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.4
2gzs_A	278	IROE protein; enterobactin, salmochelin, DFP, hydr	96.37
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.37
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.35
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.35
2bce_A	579	Cholesterol esterase; hydrolase, serine esterase,	96.34
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.31
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.3
1zoi_A	276	Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo	96.28
1a88_A	275	Chloroperoxidase L; haloperoxidase, oxidoreductase	96.25
3i28_A	555	Epoxide hydrolase 2; aromatic hydrocarbons catabol	96.24
1llf_A	534	Lipase 3; candida cylindracea cholesterol esterase	96.22
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.17
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.16
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	96.15
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.13
1thg_A	544	Lipase; hydrolase(carboxylic esterase); HET: NAG N	96.07
1dqz_A	280	85C, protein (antigen 85-C); fibronectin, structur	96.07
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.02
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.0
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.99
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	95.94
2fj0_A	551	JuvenIle hormone esterase; manduca sexta, alpha-be	95.91
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.89
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.86
1a8s_A	273	Chloroperoxidase F; haloperoxidase, oxidoreductase	95.84
2e3j_A	356	Epoxide hydrolase EPHB; epoxide hydrolase B, struc	95.81
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	95.74
2r11_A	306	Carboxylesterase NP; 2632844, putative hydrolase,	95.73
1ufo_A	238	Hypothetical protein TT1662; alpha-beta fold, hydr	95.72
2y6u_A	398	Peroxisomal membrane protein LPX1; hydrolase, puta	95.69
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	95.63
3vdx_A	456	Designed 16NM tetrahedral protein CAGE containing	95.47
3ia2_A	271	Arylesterase; alpha-beta hydrolase fold, transitio	95.45
3bwx_A	285	Alpha/beta hydrolase; YP_496220.1, joint center fo	95.43
1qlw_A	328	Esterase; anisotropic refinement, atomic resolutio	95.36
3r0v_A	262	Alpha/beta hydrolase fold protein; structural geno	95.3
3sty_A	267	Methylketone synthase 1; alpha/beta hydrolase, dec	95.3
1a8q_A	274	Bromoperoxidase A1; haloperoxidase, oxidoreductase	95.27
2vat_A	444	Acetyl-COA--deacetylcephalosporin C acetyltransfer	95.25
3dkr_A	251	Esterase D; alpha beta hydrolase, mechanism, catal	95.24
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	95.24
3pic_A	375	CIP2; alpha/beta hydrolase fold, glucuronoyl ester	95.22
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.15
4fbl_A	281	LIPS lipolytic enzyme; thermostable, structural ge	95.14
3rm3_A	270	MGLP, thermostable monoacylglycerol lipase; alpha/	95.11
1q0r_A	298	RDMC, aclacinomycin methylesterase; anthracycline,	95.09
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.09
4g9e_A	279	AHL-lactonase, alpha/beta hydrolase fold protein;	95.08
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	94.97
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.92
4g4g_A	433	4-O-methyl-glucuronoyl methylesterase; alpha/beta	94.82
1mtz_A	293	Proline iminopeptidase; alpha-beta hydrolase, CAP	94.75
1c4x_A	285	BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di	94.68
2wfl_A	264	Polyneuridine-aldehyde esterase; alkaloid metaboli	94.64
3bix_A	574	Neuroligin-1, neuroligin I; esterase domain, alpha	94.61
3cn9_A	226	Carboxylesterase; alpha/beta hydrolase fold super-	94.55
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.54
2yys_A	286	Proline iminopeptidase-related protein; TTHA1809,	94.48
2rau_A	354	Putative esterase; NP_343859.1, putative lipase, s	94.43
3g9x_A	299	Haloalkane dehalogenase; alpha/beta hydrolase, hel	94.4
2cjp_A	328	Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu	94.34
1auo_A	218	Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl	94.33
3b5e_A	223	MLL8374 protein; NP_108484.1, carboxylesterase, st	94.28
3u1t_A	309	DMMA haloalkane dehalogenase; alpha/beta-hydrolase	94.25
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	94.17
1brt_A	277	Bromoperoxidase A2; haloperoxidase, oxidoreductase	94.15
3fob_A	281	Bromoperoxidase; structural genomics, IDP00046, ba	94.13
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.01
2pl5_A	366	Homoserine O-acetyltransferase; alpha/beta hydrola	93.99
1hkh_A	279	Gamma lactamase; hydrolase, alpha/beta hydrolase,	93.97
1b6g_A	310	Haloalkane dehalogenase; hydrolase, alpha/beta-hyd	93.97
4i19_A	388	Epoxide hydrolase; structural genomics, PSI-biolog	93.93
2ocg_A	254	Valacyclovir hydrolase; alpha beta hydrolase fold;	93.89
3guu_A	462	Lipase A; protein structure, hydrolase; HET: 1PE;	93.88
4h0c_A	210	Phospholipase/carboxylesterase; PSI-biology, midwe	93.79
3g02_A	408	Epoxide hydrolase; alpha/beta hydrolase fold, enan	93.78
3e0x_A	245	Lipase-esterase related protein; APC60309, clostri	93.76
2b61_A	377	Homoserine O-acetyltransferase; acyl-enzyme, aspar	93.75
1fj2_A	232	Protein (acyl protein thioesterase 1); alpha/beta	93.72
3i1i_A	377	Homoserine O-acetyltransferase; structural genomic	93.71
3qvm_A	282	OLEI00960; structural genomics, PSI-biology, midwe	93.69
4dnp_A	269	DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu	93.67
3r40_A	306	Fluoroacetate dehalogenase; FACD, defluorinase, al	93.64
2xt0_A	297	Haloalkane dehalogenase; hydrolase, alpha-beta hyd	93.62
3qmv_A	280	Thioesterase, REDJ; alpha/beta hydrolase fold, hyd	93.6
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	93.57
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	93.56
3nwo_A	330	PIP, proline iminopeptidase; structural genomics,	93.42
3oos_A	278	Alpha/beta hydrolase family protein; APC67239.0, p	93.22
1wm1_A	317	Proline iminopeptidase; complex with inhibitor, hy	93.18
3om8_A	266	Probable hydrolase; structural genomics, PSI-2, pr	93.15
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.11
2wue_A	291	2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas	93.09
1azw_A	313	Proline iminopeptidase; aminopeptidase, serine pro	93.04
3kda_A	301	CFTR inhibitory factor (CIF); alpha/beta hydrolase	92.94
3og9_A	209	Protein YAHD A copper inducible hydrolase; alpha/b	92.85
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	92.81
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	92.78
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	92.78
3kxp_A	314	Alpha-(N-acetylaminomethylene)succinic acid hydrol	92.67
3hss_A	293	Putative bromoperoxidase; alpha beta hydrolase, ox	92.66
1u2e_A	289	2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase	92.62
1tqh_A	247	Carboxylesterase precursor; tetrahedral intermedia	92.56
1j1i_A	296	META cleavage compound hydrolase; carbazole degrad	92.29
1ex9_A	285	Lactonizing lipase; alpha-beta hydrolase fold, pho	92.15
1iup_A	282	META-cleavage product hydrolase; aromatic compound	92.15
3ibt_A	264	1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO,	91.88
1r3d_A	264	Conserved hypothetical protein VC1974; structural	91.7
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	91.52
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	91.48
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	91.35
2xua_A	266	PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate	91.19
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.09
1pja_A	302	Palmitoyl-protein thioesterase 2 precursor; hydrol	90.89
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	90.72
3gff_A	331	IROE-like serine hydrolase; NP_718593.1, structura	90.66
2qvb_A	297	Haloalkane dehalogenase 3; RV2579, alpha-beta hydr	90.65
2q0x_A	335	Protein DUF1749, uncharacterized protein; alpha/be	90.6
4fhz_A	285	Phospholipase/carboxylesterase; alpha/beta hydrola	90.36
1ys1_X	320	Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h	90.35
2h1i_A	226	Carboxylesterase; structural genomics, PSI-2, prot	90.3
3afi_E	316	Haloalkane dehalogenase; A/B-hydrolase, hydrolase;	90.2
2puj_A	286	2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola;	90.19
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	90.15
1tca_A	317	Lipase; hydrolase(carboxylic esterase); HET: NAG;	90.06
2qmq_A	286	Protein NDRG2, protein NDR2; alpha/beta-hydrolases	89.99
2wj6_A	276	1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid	89.93
3l80_A	292	Putative uncharacterized protein SMU.1393C; alpha/	89.8
3fsg_A	272	Alpha/beta superfamily hydrolase; PF00561, MCSG, P	89.65
3fla_A	267	RIFR; alpha-beta hydrolase thioesterase, hydrolase	89.56
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	89.42
3c5v_A	316	PME-1, protein phosphatase methylesterase 1; demet	89.25
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	88.96
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	88.96
3b12_A	304	Fluoroacetate dehalogenase; dehalogease, hydrolase	88.42
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	88.67
1mj5_A	302	1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase;	88.64
2r8b_A	251	AGR_C_4453P, uncharacterized protein ATU2452; APC6	88.59
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	88.53
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	88.25
2xmz_A	269	Hydrolase, alpha/beta hydrolase fold family; menaq	87.36
1ehy_A	294	Protein (soluble epoxide hydrolase); alpha/beta hy	87.3
3qyj_A	291	ALR0039 protein; alpha/beta fold, hydrolase; 1.78A	87.22
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	87.15
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	87.12
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	86.97
4fol_A	299	FGH, S-formylglutathione hydrolase; D-type esteras	86.89
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	86.13
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	85.81
3v48_A	268	Aminohydrolase, putative aminoacrylate hydrolase R	85.42

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=100.00  E-value=1.9e-54  Score=480.18  Aligned_cols=456  Identities=29%  Similarity=0.537  Sum_probs=375.2

Q ss_pred             cccCCCCCCCcCCHHHHhcCCCccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCC
Q 008927           68 ITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG  147 (548)
Q Consensus        68 ~~~~~g~w~spit~~~l~~~~~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg  147 (548)
                      +++|||+|++||+++++......+.+|+++ |+.++|++.++.++++..||.+..+  +..++||....++++.+++|++
T Consensus         3 ~~~~~g~w~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~   79 (662)
T 3azo_A            3 STAPYGAWQSPIDAALVASRSGRPACVGAV-GDEVWWVAPRPAEAGRATLVRRRAD--GAEESALPAPWNVRNRVFEYSG   79 (662)
T ss_dssp             EECCTTCCCCSCCHHHHHHTCSCCEEEEEE-TTEEEEEEEETTTTTEEEEEEECTT--SCEEESSCTTCCBCCCGGGTCC
T ss_pred             ccCCCcCCCCCCCHHHHhhcCCccceeEEc-CCeEEEEecCcccCCcEEEEEECCC--CCcceeCCCCccccccccccCC
Confidence            789999999999999999987899999999 8999999998888889999987444  5789999988899999999999


Q ss_pred             eee--E--EECCE-EEEEeCCCCeEEEEeCC--CCCCCceecCCCCCC-CCceecceeeCCCCCEEEEEEeccCC-CCCC
Q 008927          148 GAF--R--IFGDT-VIFSNYKDQRLYKHSID--SKDSSPLPITPDYGE-PLVSYADGIFDPRFNRYVTVREDRRQ-DALN  218 (548)
Q Consensus       148 ~~~--~--~~~~~-i~F~~~~~~~Ly~~~~~--~~~~~~~~lT~~~~~-~~~~~~~~~~SpDG~~i~~v~~~~~~-~~~~  218 (548)
                      +.+  +  |||+. |+|+++++.+||+++++  +. +++++||..... ...++.++.|||||++|+|+++++.+ .+..
T Consensus        80 ~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~-~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~  158 (662)
T 3azo_A           80 FPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGG-AVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD  158 (662)
T ss_dssp             CCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTC-CCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred             ccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCC-CCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence            875  3  67888 99999888899999987  20 467888873100 13467789999999999998766321 1112


Q ss_pred             ceeEEEEEECCC------CCccCcEEee-ecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEE
Q 008927          219 STTEIVAIALNG------QNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC  291 (548)
Q Consensus       219 ~~~~l~~idl~~------g~~~~~~~L~-~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~  291 (548)
                      ...+||++|+++      ++   .++|+ .+.+++..+.|||||++|+|.+++.+.++|+..+||+++++.+|.+.+.+.
T Consensus       159 ~~~~i~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~  235 (662)
T 3azo_A          159 VRRFLAAVPLDGSAAADRSA---VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT  235 (662)
T ss_dssp             EEEEEEEEETTSTTTTCGGG---SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred             ceeEEEEEECCCCccccCCc---eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence            457999999999      77   78888 777778889999999999999988888899889999999984352222344


Q ss_pred             EcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEE
Q 008927          292 VAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLI  371 (548)
Q Consensus       292 l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l  371 (548)
                      +.... .  ..+..+.|+|||+|+|++++ .+..+||++++++++.+.++....+...|.|..+...+.+.    +++.+
T Consensus       236 l~~~~-~--~~~~~~~~spdg~l~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~----~~~~~  307 (662)
T 3azo_A          236 LLGGP-E--EAIAQAEWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPL----ANGLI  307 (662)
T ss_dssp             EEEET-T--BCEEEEEECTTSCEEEEECT-TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEEC----TTSCE
T ss_pred             eCCCC-C--ceEcceEECCCCeEEEEECC-CCCeEEEEEECCCCceeecccccccccCccccccCceEeEe----CCCEE
Confidence            44321 1  45678999999998888887 78889999999889888888766666778998877778887    45678


Q ss_pred             EEEEEeCCeEEEEEEECCCCceEeecCCCceeEee-eecCCEEEEEEecCCCCCeEEEEEcCCCceeeeeeEEEecCCCC
Q 008927          372 ACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPD  450 (548)
Q Consensus       372 ~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~~~-s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~~~~l~~~~~  450 (548)
                      ++.... +..+|+.+|+++++++.|+.+...+..+ +.+++.++++.++...+.+||++|+++++.      +.|+..+.
T Consensus       308 ~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~------~~l~~~~~  380 (662)
T 3azo_A          308 AVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA------RTIGARHT  380 (662)
T ss_dssp             EEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE------EEEESCCC
T ss_pred             EEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce------EEeecCCc
Confidence            888877 8999999999989888888766666777 889999999999988999999999988874      34445444


Q ss_pred             CCccCCCccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEe
Q 008927          451 TLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV  530 (548)
Q Consensus       451 ~~l~~~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~  530 (548)
                      ..+....++.++.+++++. ||.+|++++|.|++.++.+++++++|+||++||||.......|....|+|+++||+|+.+
T Consensus       381 ~~~~~~~~~~~~~~~~~~~-dg~~i~~~~~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~  459 (662)
T 3azo_A          381 DPVDPAYYPEPQIRTFTAP-DGREIHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADV  459 (662)
T ss_dssp             CSSCGGGSCCCEEEEEECT-TSCEEEEEEECCCCSSEECCTTCCCCEEEEECSSSSSCCCCSCCHHHHHHHTTTCEEEEE
T ss_pred             ccCCccccCcceEEEEEcC-CCCEEEEEEECCCCccccCCCCCCccEEEEECCCCCccCcccchHHHHHHHhCCCEEEEE
Confidence            5667778889999999997 999999999999764332334678999999999999888888999999999999999999


Q ss_pred             CCCCCCCCChhhhhcc
Q 008927          531 NYGGSTGLSSVPSTSI  546 (548)
Q Consensus       531 NyRGStGyG~~f~~ai  546 (548)
                      |||||+|||+.|.+++
T Consensus       460 d~rG~~~~G~~~~~~~  475 (662)
T 3azo_A          460 NYGGSTGYGRAYRERL  475 (662)
T ss_dssp             ECTTCSSSCHHHHHTT
T ss_pred             CCCCCCCccHHHHHhh
Confidence            9999999999998764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=100.00  E-value=4.1e-36  Score=337.61  Aligned_cols=404  Identities=11%  Similarity=0.033  Sum_probs=283.0

Q ss_pred             CccCceEEcCCCcEEEEEecCCCCCceEEEEcCC---CCCCC-CcccCCCCCCccccceee---CCeeeE-EECCEEEEE
Q 008927           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPA---KAGDE-PSDITPKEYAVRTTAQEY---GGGAFR-IFGDTVIFS  160 (548)
Q Consensus        89 ~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~---~~~~~-~~~lt~~~~~~r~~v~~y---gg~~~~-~~~~~i~F~  160 (548)
                      ..++-|... |+++||...... +.+..|++.+.   ++ +. ..+++... |.++..++|   +...|+ |||+.|+|+
T Consensus       117 ~~~~~p~~~-g~~~yy~~~~~g-~~~~vl~r~~~~~~~~-~~~~~~vlld~-n~~a~~~~~~~~~~~~~S~PDG~~lAy~  192 (751)
T 2xe4_A          117 DDMSAPYVY-GKYRYYTREVKG-KPYKIYCRVFTDKEPG-DVAAEEVIIDV-NQVAEGKAFCDVMEVKPAPPEHDLVAFS  192 (751)
T ss_dssp             SEECCCEEE-TTEEEEEEECTT-CCSCEEEEEETTSCTT-CTTTCEEEEEH-HHHTTTCSCCEEEEEEECTTTTCEEEEE
T ss_pred             ccCCCCeEE-CCEEEEEEECCC-CceeEEEEEcCCCCCC-CCcCCEEEech-hHhccCCCeEEEeeeEecCCCCCEEEEE
Confidence            344555544 999999975421 22567887765   42 20 33333221 434444444   446789 899999999


Q ss_pred             eCCCC----eEEEEeCCCCCC-CceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccC
Q 008927          161 NYKDQ----RLYKHSIDSKDS-SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (548)
Q Consensus       161 ~~~~~----~Ly~~~~~~~~~-~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~  235 (548)
                      .+.++    +||++++++  + +  .++...   ...+.++.|||||+.|+|++.+..    ....+||++++.+++. +
T Consensus       193 ~~~~G~~~~~l~v~dl~~--g~~--~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~----~~~~~v~~~~lgt~~~-~  260 (751)
T 2xe4_A          193 VDMSGNEVYTIEFKRISD--PSQ--TIADKV---SGTNGEIVWGPDHTSLFYVTKDET----LRENKVWRHVMGKLQS-E  260 (751)
T ss_dssp             EESSSSSCEEEEEEETTC--TTC--CCCCCE---EEECSCCEECSSTTEEEEEEECTT----CCEEEEEEEETTSCGG-G
T ss_pred             EeCCCCceEEEEEEECCC--CCE--eCCccc---cCceeeEEEecCCCEEEEEEECCC----CCCCEEEEEECCCCch-h
Confidence            86543    599999997  5 4  222210   123567899999999999876532    1336899999988751 1


Q ss_pred             cEEeeec--CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeee--EEEcCCCCCcccCCcCceECcC
Q 008927          236 PKVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR--VCVAGFDPTIVESPTEPKWSSK  311 (548)
Q Consensus       236 ~~~L~~~--~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~--~~l~~~~~~~~~~~~~~~wspD  311 (548)
                      .+++.++  ..++..+.|||||++|+|..+..     ..++||+++++. +.. +.  +++....       ..+.|++|
T Consensus       261 ~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~-----~~~~l~~~d~~~-~~~-~~~~~~l~~~~-------~~~~~s~~  326 (751)
T 2xe4_A          261 DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP-----ETAEVHLLDLRK-GNA-HNTLEIVRPRE-------KGVRYDVQ  326 (751)
T ss_dssp             CEEEEECCCTTCEEEEEECTTSSEEEEEEECS-----SCEEEEEEESSS-CTT-CCCEEESSCCC-------TTCCEEEE
T ss_pred             cEEEEecCCCceEEEEEECCCCCEEEEEecCC-----CCceEEEEECCC-CCC-CceeEEeecCC-------CCceEEEe
Confidence            2355433  34677899999999999988654     367999999984 310 13  4454422       23345555


Q ss_pred             ---Cc-EEEEEeCC-CCeeeEEEEeccC-CeeEe-ecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEE
Q 008927          312 ---GE-LFFVTDRK-NGFWNLHKWIESN-NEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (548)
Q Consensus       312 ---G~-L~~~sd~~-~g~~~Ly~~d~~~-g~~~~-l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~  384 (548)
                         |+ |||++++. .++++||++++++ ++.+. |++...+.       ....+.+     .++.|++....++..+|+
T Consensus       327 ~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~-------~l~~~~~-----~~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          327 MHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDV-------FMESIAV-----RSNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             EETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSE-------EEEEEEE-----CSSEEEEEEEETTEEEEE
T ss_pred             eeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCc-------EEEEEEE-----ECCEEEEEEEeCCEEEEE
Confidence               77 99999884 4788999999876 45555 55432111       1112334     567899999999999999


Q ss_pred             EEEC-------CCCc-eEeecCCCce-eEee------eecCCEEEEEEecCCCCCeEEEEEcCCCceeeeeeEEEecCCC
Q 008927          385 ILDD-------FGHS-LSLLDIPFTD-IDNI------TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSP  449 (548)
Q Consensus       385 ~~dl-------~~g~-~~~l~~~~~~-~~~~------s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~~~~l~~~~  449 (548)
                      ++++       ++++ .+.|+.+... ...+      +.+++.++|..++.+.|+++|.+|+.+++.+      +|+...
T Consensus       395 ~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~------~l~~~~  468 (751)
T 2xe4_A          395 TMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT------AVKVRE  468 (751)
T ss_dssp             EEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE------EEEECC
T ss_pred             EEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE------EEeccc
Confidence            9996       6777 7887654322 2233      3467889999999999999999999888743      344332


Q ss_pred             CC-CccCCCccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEE
Q 008927          450 DT-LKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFV  528 (548)
Q Consensus       450 ~~-~l~~~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl  528 (548)
                      .. .++...+ .+|.++|++. ||.+|+++|++|++  +.  +++++|+||++||||.....+.|+...|.|+++||+|+
T Consensus       469 ~~~~~~~~~~-~~~~~~~~s~-dG~~i~~~l~~p~~--~~--~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~  542 (751)
T 2xe4_A          469 VGGGFDAANY-KVERRFATAP-DQTKIPLSVVYHKD--LD--MSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCDRGMIFA  542 (751)
T ss_dssp             CCTTCCGGGE-EEEEEEEECT-TCCEEEEEEEEETT--SC--TTSCCCEEEECCCCTTCCCCCCCCGGGHHHHTTTCEEE
T ss_pred             cccCCCccce-EEEEEEEECC-CCcEEEEEEEcCCC--CC--CCCCccEEEEECCCCCcCCCCcchHHHHHHHhCCcEEE
Confidence            21 3455555 4799999998 99999999999965  32  25688999999999999988899999999999999999


Q ss_pred             EeCCCCCCCCChhhhh-cc
Q 008927          529 DVNYGGSTGLSSVPST-SI  546 (548)
Q Consensus       529 ~~NyRGStGyG~~f~~-ai  546 (548)
                      .+||||+++||++|.+ +.
T Consensus       543 ~~d~RG~g~~G~~~~~~~~  561 (751)
T 2xe4_A          543 IAHIRGGSELGRAWYEIGA  561 (751)
T ss_dssp             EECCTTSCTTCTHHHHTTS
T ss_pred             EEeeCCCCCcCcchhhccc
Confidence            9999999999999987 54

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=100.00  E-value=6.8e-35  Score=326.32  Aligned_cols=420  Identities=12%  Similarity=0.084  Sum_probs=291.9

Q ss_pred             HHhcCCCccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCC-CCCccccceeeCCeeeEEECCEEEEEe
Q 008927           83 VVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPK-EYAVRTTAQEYGGGAFRIFGDTVIFSN  161 (548)
Q Consensus        83 ~l~~~~~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~-~~~~r~~v~~ygg~~~~~~~~~i~F~~  161 (548)
                      .+.+. ..+..|... |+++||+.... ...+..||+++..+ ++.+.|+.. ..... .-...++.+|+|||+.|+|..
T Consensus        69 ~~~~~-~~~~~p~~d-G~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~lld~~~l~~~-~~~~~~~~~~SPDg~~la~~~  143 (710)
T 2xdw_A           69 ELYDY-PKYSCHFKK-GKRYFYFYNTG-LQNQRVLYVQDSLE-GEARVFLDPNILSDD-GTVALRGYAFSEDGEYFAYGL  143 (710)
T ss_dssp             HHHCS-CEECCCEEE-TTEEEEEEECS-SCSSCEEEEESSTT-SCCEEEECGGGGCTT-SCEEEEEEEECTTSSEEEEEE
T ss_pred             Hhhcc-ccCCCCEEE-CCEEEEEEEcC-CceEEEEEEEcCCC-CCcEEEECHHHhccC-CCEEEEEEEECCCCCEEEEEE
Confidence            34444 556677633 99999998642 12355899887653 455544421 11100 001234568999999999997


Q ss_pred             CCCC----eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCC-------CCCceeEEEEEECCC
Q 008927          162 YKDQ----RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-------ALNSTTEIVAIALNG  230 (548)
Q Consensus       162 ~~~~----~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~-------~~~~~~~l~~idl~~  230 (548)
                      +..+    +||++++++  ++..+++..    ...+..+.|||||+.|+|.+.+....       ......+||++++.+
T Consensus       144 ~~~G~~~~~i~v~d~~t--g~~~~~~~~----~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t  217 (710)
T 2xdw_A          144 SASGSDWVTIKFMKVDG--AKELPDVLE----RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGT  217 (710)
T ss_dssp             EETTCSCEEEEEEETTT--TEEEEEEEE----EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTS
T ss_pred             cCCCCceEEEEEEECCC--CCCCccccc----CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCC
Confidence            6543    899999998  777665432    23466789999999999986543210       001246799999988


Q ss_pred             CCccCcEEeeec---CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCC-----CceeeeEEEcCCCCCcccC
Q 008927          231 QNIQEPKVLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-----GDVYKRVCVAGFDPTIVES  302 (548)
Q Consensus       231 g~~~~~~~L~~~---~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~-----g~~~~~~~l~~~~~~~~~~  302 (548)
                      ++. +.+.+.++   ..+...+.|||||++|++......+   ...+||+++++..     +.. ..+.+....    ..
T Consensus       218 ~~~-~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~---~~~~l~~~d~~~~~~~~~~~~-~~~~l~~~~----~~  288 (710)
T 2xdw_A          218 DQS-EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD---PVNRLWYCDLQQESNGITGIL-KWVKLIDNF----EG  288 (710)
T ss_dssp             CGG-GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS---SCCEEEEEEGGGSSSSSCSSC-CCEEEECSS----SS
T ss_pred             Ccc-cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC---CccEEEEEECcccccccCCcc-ceEEeeCCC----Cc
Confidence            751 12345443   2346688999999999988753321   1578999999741     321 234444432    22


Q ss_pred             CcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCe---eEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC
Q 008927          303 PTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE---VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (548)
Q Consensus       303 ~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~---~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~  378 (548)
                      . ...|+|||+ |+|.++.+.....|+++++++++   .+.|++...+    ..   ...+.+.    +++.|++.+..+
T Consensus       289 ~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~----~~---~~~~~~~----~~~~lv~~~~~~  356 (710)
T 2xdw_A          289 E-YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK----DV---LEWVACV----RSNFLVLCYLHD  356 (710)
T ss_dssp             C-EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS----CE---EEEEEEE----TTTEEEEEEEET
T ss_pred             E-EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC----Ce---EEEEEEE----cCCEEEEEEEEC
Confidence            2 346899999 99988874457889999998774   3566543110    01   1123454    578899999999


Q ss_pred             CeEEEEEEECCCCc-eEeecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc--eeeeeeEEEecCCCCCCc
Q 008927          379 GRSYLGILDDFGHS-LSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK--LKAVDFKVVWSSSPDTLK  453 (548)
Q Consensus       379 g~~~L~~~dl~~g~-~~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~--~~~~~~~~~l~~~~~~~l  453 (548)
                      +..+|+++++.+|+ .+.|..+...+..+  +++++.++|..++.++|..||++|+.+++  .+      +|.......+
T Consensus       357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~------~l~~~~~~~~  430 (710)
T 2xdw_A          357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPR------VFREVTVKGI  430 (710)
T ss_dssp             TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCE------EEEECCCTTC
T ss_pred             CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceE------EeeecccCCc
Confidence            99999999996665 56777664445544  56788999999999999999999998876  43      3333222224


Q ss_pred             cCCCccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHh-cCcEEEEeCC
Q 008927          454 YKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNY  532 (548)
Q Consensus       454 ~~~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~as-rGyaVl~~Ny  532 (548)
                      +...+ .+|.++|++. ||.+|+++++.|++  +.  .++++|+||++||||.....+.|+...+.|++ +||+|+.+|+
T Consensus       431 ~~~~~-~~~~~~~~~~-dg~~i~~~~~~p~~--~~--~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~~G~~v~~~d~  504 (710)
T 2xdw_A          431 DASDY-QTVQIFYPSK-DGTKIPMFIVHKKG--IK--LDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANI  504 (710)
T ss_dssp             CGGGE-EEEEEEEECT-TSCEEEEEEEEETT--CC--CSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECC
T ss_pred             Ccccc-EEEEEEEEcC-CCCEEEEEEEecCC--CC--CCCCccEEEEEcCCCCCcCCCcccHHHHHHHHhCCcEEEEEcc
Confidence            44444 5789999998 99999999999975  32  25678999999999999888899988889999 9999999999


Q ss_pred             CCCCCCChhhhhcc
Q 008927          533 GGSTGLSSVPSTSI  546 (548)
Q Consensus       533 RGStGyG~~f~~ai  546 (548)
                      ||+.+||++|.++.
T Consensus       505 rG~g~~g~~~~~~~  518 (710)
T 2xdw_A          505 RGGGEYGETWHKGG  518 (710)
T ss_dssp             TTSSTTHHHHHHTT
T ss_pred             CCCCCCChHHHHhh
Confidence            99999999998764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=100.00  E-value=7.9e-35  Score=327.29  Aligned_cols=407  Identities=10%  Similarity=0.058  Sum_probs=279.4

Q ss_pred             CceEEcC-CCcEEEEEecCC---CCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927           92 GGTAVDG-HGRLIWLESRPT---EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (548)
Q Consensus        92 ~~~~~sp-g~~i~~~~~~~~---e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L  167 (548)
                      .++.+|| |+.|++......   ..+...++.++..+ ++.++|+.....+.       ..+|+|||++|+|..  +++|
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~-~~~~~l~~~~~~~~-------~~~~SPdG~~la~~~--~~~i  134 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK-RQLITEERIPNNTQ-------WVTWSPVGHKLAYVW--NNDI  134 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-TEECCSSCCCTTEE-------EEEECSSTTCEEEEE--TTEE
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCC-CcEEEcccCCCcce-------eeEECCCCCEEEEEE--CCeE
Confidence            4589999 999988764210   12235666776653 46777775332221       257999999999997  5789


Q ss_pred             EEEeCCCCCCCceecCCCCCCCC---------------ceecceeeCCCCCEEEEEEeccCC------------------
Q 008927          168 YKHSIDSKDSSPLPITPDYGEPL---------------VSYADGIFDPRFNRYVTVREDRRQ------------------  214 (548)
Q Consensus       168 y~~~~~~~~~~~~~lT~~~~~~~---------------~~~~~~~~SpDG~~i~~v~~~~~~------------------  214 (548)
                      |++++++  ++.++||.......               .+...+.|||||+.|+|.+.+...                  
T Consensus       135 ~~~~~~~--~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~  212 (740)
T 4a5s_A          135 YVKIEPN--LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPK  212 (740)
T ss_dssp             EEESSTT--SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCE
T ss_pred             EEEECCC--CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCc
Confidence            9999988  78899987521000               011247899999999998654320                  


Q ss_pred             ---------CCCCceeEEEEEECCC---C---CccCcEEeee------cCCceeeeEECCCCCEEEEEEecCCCCCCCCc
Q 008927          215 ---------DALNSTTEIVAIALNG---Q---NIQEPKVLVS------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA  273 (548)
Q Consensus       215 ---------~~~~~~~~l~~idl~~---g---~~~~~~~L~~------~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~  273 (548)
                               +..+....|+++|+++   +   +   .+.|..      ...+...+.|||||+.+++...+..    ...
T Consensus       213 ~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~----~~~  285 (740)
T 4a5s_A          213 TVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT---SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ----NYS  285 (740)
T ss_dssp             EEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC---EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST----TEE
T ss_pred             ceeecCCCCcCcCCeeEEEEEECCCCCCCCcce---EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC----CEE
Confidence                     0012344799999999   7   4   555653      3334678999999998877664432    245


Q ss_pred             eEEEEEecCCCc----eee-eEEEcCCCCCcccC-----CcCceECcCCc-EE-EEEeCCCCeeeEEEEeccCCeeEeec
Q 008927          274 ELWVGYISENGD----VYK-RVCVAGFDPTIVES-----PTEPKWSSKGE-LF-FVTDRKNGFWNLHKWIESNNEVLAIY  341 (548)
Q Consensus       274 ~L~v~~~~~~g~----~~~-~~~l~~~~~~~~~~-----~~~~~wspDG~-L~-~~sd~~~g~~~Ly~~d~~~g~~~~l~  341 (548)
                      .|++.|+++ |+    ... ..++.... .  ..     ...|.|||||+ |+ +.+++ +|+.+||++++++++.++|+
T Consensus       286 ~i~~~d~~t-g~~~~~~~~~~~l~~~~~-~--~~v~~~~~~~p~fspDG~~l~~~~s~~-~G~~~l~~~~~~~~~~~~lT  360 (740)
T 4a5s_A          286 VMDICDYDE-SSGRWNCLVARQHIEMST-T--GWVGRFRPSEPHFTLDGNSFYKIISNE-EGYRHICYFQIDKKDCTFIT  360 (740)
T ss_dssp             EEEEEEEET-TTTEEEECGGGCEEEECS-S--SCSSSSSCCCCEECTTSSEEEEEEECT-TSCEEEEEEETTCSSCEESC
T ss_pred             EEEEEECCC-CccccceeEEEEeeeccC-C--ceEccCcCCCceEcCCCCEEEEEEEcC-CCceEEEEEECCCCceEecc
Confidence            799999985 43    101 11211111 1  22     24799999999 77 67787 89999999999999989998


Q ss_pred             ccccccCCCcccccCcceeeeeecCCCCEEEEEEEe----CCeEEEEEEECCCCceE-eecCCC----ceeE--eeeecC
Q 008927          342 SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ----NGRSYLGILDDFGHSLS-LLDIPF----TDID--NITLGN  410 (548)
Q Consensus       342 ~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~----~g~~~L~~~dl~~g~~~-~l~~~~----~~~~--~~s~d~  410 (548)
                      ....+...+        +.+     |++.|||.+..    .+..+||++++++++.+ .|+...    ..+.  .+++++
T Consensus       361 ~g~~~v~~~--------~~~-----d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg  427 (740)
T 4a5s_A          361 KGTWEVIGI--------EAL-----TSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEA  427 (740)
T ss_dssp             CSSSCEEEE--------EEE-----CSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTS
T ss_pred             cCCEEEEEE--------EEE-----eCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCC
Confidence            542221110        112     68899999876    46789999999877654 676331    2222  347899


Q ss_pred             CEEEEEEecCCCCCeEEEEEcCCCceeeeeeEEEecCCC--CCCccCCCccCCeEEEeeccCCCeEEEEEEEcCCCCCCC
Q 008927          411 DCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSP--DTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQ  488 (548)
Q Consensus       411 ~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~~~~l~~~~--~~~l~~~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~  488 (548)
                      +.+++..+++. ++.+++++.++++..     +++....  ...+....+..++.+++ +. ||.+++++++.|.+  |+
T Consensus       428 ~~~~~~~s~~~-~p~~~l~~~~~~~~~-----~~l~~n~~~~~~~~~~~~~~~~~~~~-~~-dg~~l~~~~~~P~~--~~  497 (740)
T 4a5s_A          428 KYYQLRCSGPG-LPLYTLHSSVNDKGL-----RVLEDNSALDKMLQNVQMPSKKLDFI-IL-NETKFWYQMILPPH--FD  497 (740)
T ss_dssp             SEEEEEECSBS-SCEEEEEETTTTEEE-----EEEECCHHHHHHHTTEECCEEEEEEE-EE-TTEEEEEEEEECTT--CC
T ss_pred             CEEEEEeCCCC-CCEEEEEECCCCcEE-----EEeccChhhhhhhhhccCCccEEEEE-cc-CCeEEEEEEEeCCC--CC
Confidence            99988888876 889999998777642     2332210  12234455677788888 66 99999999999965  54


Q ss_pred             CCCCCCCcEEEEEccCccccc-cCccC-hHHHHHH-hcCcEEEEeCCCCCCCCChhhhhccc
Q 008927          489 ASPEEKPPLLVKSHGGPTSEA-RGILN-LSIQYWT-SRGWAFVDVNYGGSTGLSSVPSTSIF  547 (548)
Q Consensus       489 ~~~~~~~Pliv~iHGGP~~~~-~~~~~-~~~Q~~a-srGyaVl~~NyRGStGyG~~f~~ai~  547 (548)
                        +++++|+||++||||.++. ...|. ...++++ ++||+|+.+|+||+.++|++|.++++
T Consensus       498 --~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~l~~~~G~~Vv~~D~rG~g~~g~~~~~~~~  557 (740)
T 4a5s_A          498 --KSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAIN  557 (740)
T ss_dssp             --TTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCHHHHGGGT
T ss_pred             --CCCCccEEEEECCCCcccccccccCcCHHHHHHhcCCeEEEEEcCCCCCcCChhHHHHHH
Confidence              3678999999999999864 33443 2335555 59999999999999999999988765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=100.00  E-value=2.8e-34  Score=320.55  Aligned_cols=410  Identities=13%  Similarity=0.110  Sum_probs=287.1

Q ss_pred             CccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCC-CCccccceeeCCeeeEEECCEEEEEeCCC---
Q 008927           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKE-YAVRTTAQEYGGGAFRIFGDTVIFSNYKD---  164 (548)
Q Consensus        89 ~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~-~~~r~~v~~ygg~~~~~~~~~i~F~~~~~---  164 (548)
                      ..+..|... |+++||+..... +.+..||+++..+ ++.+.|+... +..... ...++.+|+|||+.|+|+.+..   
T Consensus        70 ~~~~~p~~d-G~~~~~~~~~~~-~~~~~l~~~~~~~-~~~~~l~d~~~~a~~~~-~~~~~~~~SPDG~~la~~~~~~G~~  145 (695)
T 2bkl_A           70 DSVSTPSRR-NGRFFYVRTHKD-KEKAILYWRQGES-GQEKVLLDPNGWSKDGT-VSLGTWAVSWDGKKVAFAQKPNAAD  145 (695)
T ss_dssp             CEECCCEEE-TTEEEEEEECTT-CSSCEEEEEESTT-SCCEEEECGGGSSSSSC-EEEEEEEECTTSSEEEEEEEETTCS
T ss_pred             ccCCCCEEE-CCEEEEEEEcCC-CeEEEEEEEcCCC-CCcEEEEchHHhccCCC-EEEEEEEECCCCCEEEEEECCCCCc
Confidence            455566644 999999986532 2367889887653 4677777421 111111 1234568999999999997543   


Q ss_pred             -CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCC----CCCceeEEEEEECCCCCccCcEEe
Q 008927          165 -QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD----ALNSTTEIVAIALNGQNIQEPKVL  239 (548)
Q Consensus       165 -~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~----~~~~~~~l~~idl~~g~~~~~~~L  239 (548)
                       ..||++++++  ++..+.+..   ....+..+.|||||+.|+|++.+....    ......+||++++.+++.. .+++
T Consensus       146 ~~~i~v~dl~t--g~~~~~~~~---~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~-~~lv  219 (695)
T 2bkl_A          146 EAVLHVIDVDS--GEWSKVDVI---EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK-DTVV  219 (695)
T ss_dssp             CCEEEEEETTT--CCBCSSCCB---SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG-CEEE
T ss_pred             eEEEEEEECCC--CCCcCCccc---CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh-ceEE
Confidence             4899999998  655411111   112346789999999999986543210    0013468999999988611 2355


Q ss_pred             eecC---CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEE
Q 008927          240 VSGS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF  316 (548)
Q Consensus       240 ~~~~---~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~  316 (548)
                      ....   .++..+.|||||++|++.+.+..    ...+||+++.. +++   .+.+....    .....+.| +||+||+
T Consensus       220 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~----~~~~l~~~~~~-~~~---~~~l~~~~----~~~~~~~~-~~g~l~~  286 (695)
T 2bkl_A          220 HERTGDPTTFLQSDLSRDGKYLFVYILRGW----SENDVYWKRPG-EKD---FRLLVKGV----GAKYEVHA-WKDRFYV  286 (695)
T ss_dssp             ECCCCCTTCEEEEEECTTSCCEEEEEEETT----TEEEEEEECTT-CSS---CEEEEECS----SCCEEEEE-ETTEEEE
T ss_pred             EecCCCCEEEEEEEECCCCCEEEEEEeCCC----CceEEEEEcCC-CCc---eEEeecCC----CceEEEEe-cCCcEEE
Confidence            4432   35678999999999998876542    24689999765 343   33344322    33455667 6777777


Q ss_pred             EEeCCCCeeeEEEEeccCCee---EeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce
Q 008927          317 VTDRKNGFWNLHKWIESNNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (548)
Q Consensus       317 ~sd~~~g~~~Ly~~d~~~g~~---~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~  393 (548)
                      .++.+.+...|+++++++++.   +.|++...     .+..  ..+.+     .++.|+++...++..+|++++++++..
T Consensus       287 ~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-----~~~l--~~~~~-----~~~~lv~~~~~dg~~~l~~~~~~g~~~  354 (695)
T 2bkl_A          287 LTDEGAPRQRVFEVDPAKPARASWKEIVPEDS-----SASL--LSVSI-----VGGHLSLEYLKDATSEVRVATLKGKPV  354 (695)
T ss_dssp             EECTTCTTCEEEEEBTTBCSGGGCEEEECCCS-----SCEE--EEEEE-----ETTEEEEEEEETTEEEEEEEETTCCEE
T ss_pred             EECCCCCCCEEEEEeCCCCCccCCeEEecCCC-----CCeE--EEEEE-----ECCEEEEEEEECCEEEEEEEeCCCCee
Confidence            777645678999999987763   56654211     1111  12344     356788899999999999999876666


Q ss_pred             EeecCC-CceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCceeeeeeEEEecCCCCCCccCCCccCCeEEEeeccC
Q 008927          394 SLLDIP-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEV  470 (548)
Q Consensus       394 ~~l~~~-~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~pe~i~~~s~~  470 (548)
                      +.|..+ ...+..+  +++++.+++..++...|..||++|+++++.+      +|+... ..++... ..+|.++|++. 
T Consensus       355 ~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~------~l~~~~-~~~~~~~-~~~~~~~~~~~-  425 (695)
T 2bkl_A          355 RTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE------LWAKVD-VPMNPEQ-YQVEQVFYASK-  425 (695)
T ss_dssp             EECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE------EEEECC-CSSCGGG-EEEEEEEEECT-
T ss_pred             EEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE------EEecCC-CCCCHHH-CeEEEEEEECC-
Confidence            777654 3334444  5688899999999999999999999888743      344332 2244433 36899999998 


Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCChhhhhcc
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSVPSTSI  546 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~~f~~ai  546 (548)
                      ||.+|+++++.|++  ++  .++++|+||++||||.....+.|+...+.|+++||+|+.+|+||+.+||++|.++.
T Consensus       426 dg~~i~~~~~~p~~--~~--~~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~  497 (695)
T 2bkl_A          426 DGTKVPMFVVHRKD--LK--RDGNAPTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAG  497 (695)
T ss_dssp             TSCEEEEEEEEETT--CC--CSSCCCEEEECCCCTTCCCCCCCCGGGHHHHHTTCEEEEECCTTSSTTCHHHHHTT
T ss_pred             CCCEEEEEEEECCC--CC--CCCCccEEEEECCCCccccCCCcCHHHHHHHhCCCEEEEEecCCCCCcCHHHHHhh
Confidence            99999999999975  33  25678999999999999988899999999999999999999999999999998764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=100.00  E-value=6.1e-34  Score=317.61  Aligned_cols=406  Identities=11%  Similarity=0.132  Sum_probs=287.3

Q ss_pred             ccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccC-CCCCCccccceeeCCeeeEEECCEEEEEeCCC----
Q 008927           90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT-PKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD----  164 (548)
Q Consensus        90 ~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt-~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~----  164 (548)
                      .+.-|... |++.||...... +.+..+|+...+  ++.+-|+ +..+... .-...++.+|+|||++|+|+.+..    
T Consensus        80 ~~~~p~~~-g~~~y~~~~~~~-~~~~~~~r~~~~--~~~~vllD~n~la~~-~~~~l~~~~~SpDg~~lAy~~~~~G~~~  154 (693)
T 3iuj_A           80 KEGAPFRE-GRYHYFFKNDGL-QNQNVLWRQQEG--KPAEVFLDPNTLSPD-GTTALDQLSFSRDGRILAYSLSLAGSDW  154 (693)
T ss_dssp             EECCCEEE-TTEEEEEEECSS-CSSCEEEEECTT--SCCEEEECGGGGSTT-SCCEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred             cCCCCEEE-CCEEEEEEEcCC-CceeEEEEeCCC--CCcEEEEehhhccCC-CcEEEEEEEECCCCCEEEEEEecCCCce
Confidence            34444444 999999875432 345578876554  2333333 2222111 111234567899999999987654    


Q ss_pred             CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCC----CCCceeEEEEEECCCCCccCcEEee
Q 008927          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD----ALNSTTEIVAIALNGQNIQEPKVLV  240 (548)
Q Consensus       165 ~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~----~~~~~~~l~~idl~~g~~~~~~~L~  240 (548)
                      ..||++|+++  ++..+.+..    ..++..+.|| ||+.|+|++.+..+.    ......+||++++.++.. +.++|.
T Consensus       155 ~~i~v~dl~t--g~~~~~~~~----~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-~~~~v~  226 (693)
T 3iuj_A          155 REIHLMDVES--KQPLETPLK----DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE-DDRLVF  226 (693)
T ss_dssp             EEEEEEETTT--CSEEEEEEE----EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGG-GCEEEE
T ss_pred             EEEEEEECCC--CCCCccccC----CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcc-cceEEE
Confidence            3799999998  776555432    2346788999 999999987553100    012346899999988651 135666


Q ss_pred             ecCC----ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EE
Q 008927          241 SGSD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LF  315 (548)
Q Consensus       241 ~~~~----~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~  315 (548)
                      +..+    ++..+.|||||++|++......    ..++||+++++....  +.+.+....    .....+ |++||+ ||
T Consensus       227 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~----~~~~i~~~d~~~~~~--~~~~l~~~~----~~~~~~-~~~~g~~l~  295 (693)
T 3iuj_A          227 GAIPAQHHRYVGATVTEDDRFLLISAANST----SGNRLYVKDLSQENA--PLLTVQGDL----DADVSL-VDNKGSTLY  295 (693)
T ss_dssp             SCSGGGCCSEEEEEECTTSCEEEEEEESSS----SCCEEEEEETTSTTC--CCEEEECSS----SSCEEE-EEEETTEEE
T ss_pred             ecCCCCCeEEEEEEEcCCCCEEEEEEccCC----CCcEEEEEECCCCCC--ceEEEeCCC----CceEEE-EeccCCEEE
Confidence            5544    4667899999999998764332    236999999974221  234444432    223333 788888 99


Q ss_pred             EEEeCCCCeeeEEEEeccCCee---EeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCc
Q 008927          316 FVTDRKNGFWNLHKWIESNNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS  392 (548)
Q Consensus       316 ~~sd~~~g~~~Ly~~d~~~g~~---~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~  392 (548)
                      |+++++.....|+.+++++++.   +.|++...+      ..     .+.+   +++.|++...+++..+|+++|++++.
T Consensus       296 ~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~------~~-----~~s~---~g~~lv~~~~~~g~~~l~~~d~~g~~  361 (693)
T 3iuj_A          296 LLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ------VL-----TVHS---GSGYLFAEYMVDATARVEQFDYEGKR  361 (693)
T ss_dssp             EEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS------CE-----EEEE---ETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred             EEECCCCCCCEEEEEeCCCCCccccEEEecCCCC------EE-----EEEE---ECCEEEEEEEECCeeEEEEEECCCCe
Confidence            9988744567899999988764   566653221      11     2333   68899999999999999999999887


Q ss_pred             eEeecCCC-ceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCceeeeeeEEEecCCCCCCccCCCccCCeEEEeecc
Q 008927          393 LSLLDIPF-TDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTE  469 (548)
Q Consensus       393 ~~~l~~~~-~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~pe~i~~~s~  469 (548)
                      .+.|..+. ..+..+  +++++.+++..++.++|..||.+|+++++.      ++|...+ ..++...+ .+|.+++++.
T Consensus       362 ~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~------~~l~~~~-~~~~~~~~-~~~~~~~~~~  433 (693)
T 3iuj_A          362 VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI------SLYRASA-APFKPEDY-VSEQRFYQSK  433 (693)
T ss_dssp             EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE------EEEECCC-SSCCGGGE-EEEEEEEECT
T ss_pred             eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE------EEEEeCC-CCcChhhC-eeEEEEEecC
Confidence            78887653 334444  467889999999999999999999988874      3444443 23454444 5799999998


Q ss_pred             CCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCChhhhhcc
Q 008927          470 VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSVPSTSI  546 (548)
Q Consensus       470 ~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~~f~~ai  546 (548)
                       ||.+|+++|+.|++  +.  .++++|+||++||||.....+.|+...+.|+++||+|+.+|+||+++||++|.++.
T Consensus       434 -dg~~i~~~l~~p~~--~~--~~~~~P~ll~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~  505 (693)
T 3iuj_A          434 -DGTRVPLIISYRKG--LK--LDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAG  505 (693)
T ss_dssp             -TSCEEEEEEEEESS--CC--CSSCCCEEEECCCCTTCCCCCCCCHHHHHHHHTTCEEEEECCTTSSTTCHHHHHTT
T ss_pred             -CCcEEEEEEEecCC--CC--CCCCccEEEEECCCCCcCCCCccCHHHHHHHHCCCEEEEEeCCCCCccCHHHHHhh
Confidence             99999999999975  32  25678999999999999999999999999999999999999999999999998874

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=100.00  E-value=2.5e-33  Score=315.11  Aligned_cols=407  Identities=14%  Similarity=0.143  Sum_probs=285.6

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCC---CCCCCcccCCC-CCCccccceeeCCeeeEEECCEEEEEeCC
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAK---AGDEPSDITPK-EYAVRTTAQEYGGGAFRIFGDTVIFSNYK  163 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~---~~~~~~~lt~~-~~~~r~~v~~ygg~~~~~~~~~i~F~~~~  163 (548)
                      ..+..|.  | |+++||+..... ..+..||+++..   + ++.+.|+.. ...... -...++.+|+|||+.|+|..+.
T Consensus       109 ~~~~~p~--pdG~~~~~~~~~~~-~~~~~l~~~~~~~~~~-~~~~~lld~~~l~~~~-~~~~~~~~~SPDG~~la~~~~~  183 (741)
T 1yr2_A          109 ERFGLPQ--RRGASVFYSWNSGL-MNQSQLLVRPADAPVG-TKGRVLLDPNTWAKDG-ATALDAWAASDDGRLLAYSVQD  183 (741)
T ss_dssp             CEECCCE--EETTEEEEEEECSS-CSSCEEEEEETTSCTT-CCCEEEECGGGCC-----EEEEEEEECTTSSEEEEEEEE
T ss_pred             cccCCCE--EECCEEEEEEEcCC-CeEEEEEEEcCCccCC-CCCEEEECHHHhccCC-CEEEEeEEECCCCCEEEEEEcC
Confidence            4455555  6 999999986532 226788988754   3 466665432 111000 0123456899999999999754


Q ss_pred             C----CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCC-----CCCCceeEEEEEECCCCCcc
Q 008927          164 D----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-----DALNSTTEIVAIALNGQNIQ  234 (548)
Q Consensus       164 ~----~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~-----~~~~~~~~l~~idl~~g~~~  234 (548)
                      .    .+||++++++  ++..+.+..    ...+..+.|||| +.|+|++.+...     .......+||++++.++.. 
T Consensus       184 ~G~e~~~i~v~dl~t--g~~~~~~~~----~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-  255 (741)
T 1yr2_A          184 GGSDWRTVKFVGVAD--GKPLADELK----WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS-  255 (741)
T ss_dssp             TTCSEEEEEEEETTT--CCEEEEEEE----EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG-
T ss_pred             CCCceEEEEEEECCC--CCCCCccCC----CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch-
Confidence            3    3699999998  666554322    234568899999 999998654321     0011245799999988751 


Q ss_pred             CcEEeeecCC---ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceee-eEEEcCCCCCcccCCcCceECc
Q 008927          235 EPKVLVSGSD---FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCVAGFDPTIVESPTEPKWSS  310 (548)
Q Consensus       235 ~~~~L~~~~~---~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~-~~~l~~~~~~~~~~~~~~~wsp  310 (548)
                      +.+.+....+   ++..+.|||||++|++...+..+   ..++||++++++ +.. + .+.+....    .....+ |+|
T Consensus       256 ~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~---~~~~l~~~d~~~-~~~-~~~~~l~~~~----~~~~~~-~~~  325 (741)
T 1yr2_A          256 ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTD---PVNTVHVARVTN-GKI-GPVTALIPDL----KAQWDF-VDG  325 (741)
T ss_dssp             GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTC---SCCEEEEEEEET-TEE-CCCEEEECSS----SSCEEE-EEE
T ss_pred             hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCC---CcceEEEEECCC-CCC-cccEEecCCC----CceEEE-Eec
Confidence            1245554432   56788999999999998855421   256899999984 421 2 33444332    223344 459


Q ss_pred             CCc-EEEEEeCCCCeeeEEEEeccCC--eeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927          311 KGE-LFFVTDRKNGFWNLHKWIESNN--EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (548)
Q Consensus       311 DG~-L~~~sd~~~g~~~Ly~~d~~~g--~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d  387 (548)
                      ||+ |++.++.+.....|++++++++  +.+.|++...+     .   ...+.+     .++.|+++...++..+|++++
T Consensus       326 dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-----~---l~~~~~-----~~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          326 VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD-----N---LESVGI-----AGNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS-----E---EEEEEE-----EBTEEEEEEEETTEEEEEEEE
T ss_pred             cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC-----e---EEEEEE-----ECCEEEEEEEECCEEEEEEEe
Confidence            999 9998887445788999999874  56777653211     0   112344     356888999999999999999


Q ss_pred             CCCCceEeecCC-CceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCceeeeeeEEEecCCCCCCccCCCccCCeEE
Q 008927          388 DFGHSLSLLDIP-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELI  464 (548)
Q Consensus       388 l~~g~~~~l~~~-~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~pe~i  464 (548)
                      ++++..+.|+.+ ...+..+  +++++.++|..++..+|..||++|+.+++.      ++|... ...++...+ .+|.+
T Consensus       393 ~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~------~~l~~~-~~~~~~~~~-~~~~~  464 (741)
T 1yr2_A          393 LDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT------TPWEPV-HLTFDPADF-RVEQV  464 (741)
T ss_dssp             TTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE------EECSCC-CCSSCGGGE-EEEEE
T ss_pred             CCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE------EEEecC-CCCCChhHC-EEEEE
Confidence            877667777754 3344444  578888999999999999999999988874      344442 223444333 68999


Q ss_pred             EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCChhhhh
Q 008927          465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSVPST  544 (548)
Q Consensus       465 ~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~~f~~  544 (548)
                      +|++. ||.+|+++++.|++  +    ++++|+||++||||.....+.|+...+.|+++||+|+.+|+||+.+||++|.+
T Consensus       465 ~~~~~-dg~~i~~~~~~p~~--~----~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~  537 (741)
T 1yr2_A          465 FYPSK-DGTKVPMFIVRRKD--A----KGPLPTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHD  537 (741)
T ss_dssp             EEECT-TSCEEEEEEEEETT--C----CSCCCEEEECCCCTTCCCCCCCCHHHHHHHTTTCEEEEECCTTSSTTHHHHHH
T ss_pred             EEEcC-CCCEEEEEEEecCC--C----CCCCcEEEEECCCCCccCCCCcCHHHHHHHHCCcEEEEEecCCCCCCCHHHHH
Confidence            99998 99999999999964  2    34689999999999998888999999999999999999999999999999987


Q ss_pred             cc
Q 008927          545 SI  546 (548)
Q Consensus       545 ai  546 (548)
                      +.
T Consensus       538 ~~  539 (741)
T 1yr2_A          538 AG  539 (741)
T ss_dssp             TT
T ss_pred             hh
Confidence            53

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=100.00  E-value=4e-33  Score=312.85  Aligned_cols=424  Identities=13%  Similarity=0.121  Sum_probs=287.7

Q ss_pred             CCcCCHHHHhcC----CCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCC-CC------------
Q 008927           76 KSPLTADVVSGA----SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKE-YA------------  137 (548)
Q Consensus        76 ~spit~~~l~~~----~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~-~~------------  137 (548)
                      ..+||.+++++.    ...+..+++|| |++|++...+..+.+...|+.++..+ ++.++++... ..            
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~~   98 (741)
T 2ecf_A           20 AEKLTLEAITGPLPLSGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS-GQTRLLVDSKVVLPGTETLSDEEKA   98 (741)
T ss_dssp             --CCCHHHHTSSSCTTCCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT-CCEEEEECGGGTC------------
T ss_pred             cccccHHHHhccCCcCCCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC-CceeEccchhhcccccccccchhhh
Confidence            689999999952    14677899999 99999987532222356777776653 4566665321 10            


Q ss_pred             c--cccc---eeeCCeeeEEECCEEEEEeCCCCeEEEEeCCCCCC---CceecCCCCCCCCceecceeeCCCCCEEEEEE
Q 008927          138 V--RTTA---QEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDS---SPLPITPDYGEPLVSYADGIFDPRFNRYVTVR  209 (548)
Q Consensus       138 ~--r~~v---~~ygg~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~---~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~  209 (548)
                      .  |.++   ......+|+|||+.|+|...  ++||++++++  +   +.++++...    .....+.|||||++|+|++
T Consensus        99 ~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~--~~i~~~d~~~--~~~~~~~~l~~~~----~~~~~~~~SPDG~~la~~~  170 (741)
T 2ecf_A           99 RRERQRIAAMTGIVDYQWSPDAQRLLFPLG--GELYLYDLKQ--EGKAAVRQLTHGE----GFATDAKLSPKGGFVSFIR  170 (741)
T ss_dssp             --------CCEESCCCEECTTSSEEEEEET--TEEEEEESSS--CSTTSCCBCCCSS----SCEEEEEECTTSSEEEEEE
T ss_pred             hhhhhhhccccCcceeEECCCCCEEEEEeC--CcEEEEECCC--CCcceEEEcccCC----cccccccCCCCCCEEEEEe
Confidence            0  0000   01234579999999999984  8899999987  6   677887652    3466789999999999974


Q ss_pred             eccCCCCCCceeEEEEEECCCCCccCcEEeeecCCc-----------------eeeeEECCCCCEEEEEEecCCCCCC--
Q 008927          210 EDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF-----------------YAFPRMDPRGERMAWIEWHHPNMPW--  270 (548)
Q Consensus       210 ~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~-----------------~~~p~~SPDGk~La~~~~~~~~~p~--  270 (548)
                      .          .+|+++|+++++   .++++.....                 ...+.|||||++|+|...+....++  
T Consensus       171 ~----------~~i~~~d~~~g~---~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~  237 (741)
T 2ecf_A          171 G----------RNLWVIDLASGR---QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQK  237 (741)
T ss_dssp             T----------TEEEEEETTTTE---EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEE
T ss_pred             C----------CcEEEEecCCCC---EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEe
Confidence            2          269999999987   6776643221                 2568999999999998754321100  


Q ss_pred             -----------------------CCceEEEEEecCCCceee---------------------------------------
Q 008927          271 -----------------------DKAELWVGYISENGDVYK---------------------------------------  288 (548)
Q Consensus       271 -----------------------~~~~L~v~~~~~~g~~~~---------------------------------------  288 (548)
                                             ....|+++++++.++...                                       
T Consensus       238 ~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~  317 (741)
T 2ecf_A          238 RYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEV  317 (741)
T ss_dssp             EEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEE
T ss_pred             cCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEE
Confidence                                   112566666552021100                                       


Q ss_pred             -------eEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcce-e
Q 008927          289 -------RVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSY-E  360 (548)
Q Consensus       289 -------~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~-~  360 (548)
                             ..++..........+..+.|+|||++++.+++ +|..+||.++++++ .+.|+....+..         .. .
T Consensus       318 d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~-~g~~~l~~~~~~~~-~~~l~~~~~~v~---------~~~~  386 (741)
T 2ecf_A          318 TLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSER-TGFQHLYRIDSKGK-AAALTHGNWSVD---------ELLA  386 (741)
T ss_dssp             ETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECT-TSSCEEEEECSSSC-EEESCCSSSCEE---------EEEE
T ss_pred             ECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecC-CCccEEEEEcCCCC-eeeeeecceEEE---------eEeE
Confidence                   00000000000002357899999997777777 78889999998666 666764321111         12 2


Q ss_pred             eeeecCCCCEEEEEEEeCC--eEEEEEEECCCCceEeecCCCce-eEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 008927          361 IIQSHGEKNLIACSYRQNG--RSYLGILDDFGHSLSLLDIPFTD-IDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLK  437 (548)
Q Consensus       361 ~~~~~~d~~~l~~~~~~~g--~~~L~~~dl~~g~~~~l~~~~~~-~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~  437 (548)
                      |+|   +++.|++....++  ..+||.++..++..+.|+..... .-.+++|++.+++..++...|+++|+++++++.. 
T Consensus       387 ~s~---dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~~-  462 (741)
T 2ecf_A          387 VDE---KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANGEKI-  462 (741)
T ss_dssp             EET---TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCEE-
T ss_pred             EeC---CCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCeE-
Confidence            554   7888988887665  77899999877667777753222 2234889999999999999999999999866543 


Q ss_pred             eeeeEEEecCCCC---C-CccCC--CccCCeEEEeeccCCC-eEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccccc
Q 008927          438 AVDFKVVWSSSPD---T-LKYKS--YFSLPELIEFPTEVPG-QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR  510 (548)
Q Consensus       438 ~~~~~~~l~~~~~---~-~l~~~--~~~~pe~i~~~s~~dG-~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~  510 (548)
                           +.|+....   . .+.+.  .+..+|.++|++. || .+++++++.|.+  ++  +++++|+||++||||.....
T Consensus       463 -----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~l~~~~~~P~~--~~--~~~~~p~vv~~hG~~~~~~~  532 (741)
T 2ecf_A          463 -----ATLVENDLADPKHPYARYREAQRPVEFGTLTAA-DGKTPLNYSVIKPAG--FD--PAKRYPVAVYVYGGPASQTV  532 (741)
T ss_dssp             -----ECSSCCCSSSTTSTTHHHHTTCCCEEEEEEECT-TSSCEEEEEEECCSS--CC--TTSCEEEEEECCCSTTCCSC
T ss_pred             -----EEeccCcccccccchhhhhccCCCcEEEEEEcC-CCCEEEEEEEEeCCC--CC--CCCCcCEEEEEcCCCCcccc
Confidence                 23333211   0 34444  6788999999998 99 999999999965  43  25678999999999987632


Q ss_pred             -CccC-----hHHHHHHhcCcEEEEeCCCCCCCCChhhhhcc
Q 008927          511 -GILN-----LSIQYWTSRGWAFVDVNYGGSTGLSSVPSTSI  546 (548)
Q Consensus       511 -~~~~-----~~~Q~~asrGyaVl~~NyRGStGyG~~f~~ai  546 (548)
                       ..|.     ...++|+++||+|+.+|+||+.++|+.|.++.
T Consensus       533 ~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~s~~~~~~~~  574 (741)
T 2ecf_A          533 TDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGAL  574 (741)
T ss_dssp             SSCCCCSHHHHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTT
T ss_pred             cccccccchhHHHHHHHhCCCEEEEEecCCCCCCChhhhHHH
Confidence             3454     57899999999999999999999999987654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=100.00  E-value=5.1e-34  Score=311.59  Aligned_cols=383  Identities=15%  Similarity=0.072  Sum_probs=271.0

Q ss_pred             HHHHhcCCCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCC-CCccccceeeCCeeeEEECCEEE
Q 008927           81 ADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKE-YAVRTTAQEYGGGAFRIFGDTVI  158 (548)
Q Consensus        81 ~~~l~~~~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~-~~~r~~v~~ygg~~~~~~~~~i~  158 (548)
                      ++.+...  .+..+.++| |++|+|...+   +|...||.+ ..  ++.++||... ..+.       ..+|+||  +|+
T Consensus        16 ~~~~~~~--~~~~~~~~~DG~~la~~s~~---~g~~~lw~~-~~--g~~~~lt~~~~~~~~-------~~~~spd--~~l   78 (582)
T 3o4h_A           16 VERLIAV--EKYSLQGVVDGDKLLVVGFS---EGSVNAYLY-DG--GETVKLNREPINSVL-------DPHYGVG--RVI   78 (582)
T ss_dssp             HHHHHHS--CEEEEEEEETTTEEEEEEEE---TTEEEEEEE-ET--TEEEECCSSCCSEEC-------EECTTCS--EEE
T ss_pred             HHHHhcc--chheeecCCCCCeEEEEEcc---CCceeEEEE-cC--CCcEeeecccccccc-------cccCCCC--eEE
Confidence            4444443  456778899 9999999865   588889987 22  5788888643 1222       2367766  788


Q ss_pred             EEeCC---C--CeEEEEeC--CCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCC
Q 008927          159 FSNYK---D--QRLYKHSI--DSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ  231 (548)
Q Consensus       159 F~~~~---~--~~Ly~~~~--~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g  231 (548)
                      |+.+.   +  .+||.+++  ++   ..++++...   ...  ...|||||+.+++++...+        .++++|++++
T Consensus        79 ~~~~~~~g~~~~~l~~~~~~~~g---~~~~l~~~~---~~~--~~~~s~dg~~~~~~s~~~~--------~~~l~d~~~g  142 (582)
T 3o4h_A           79 LVRDVSKGAEQHALFKVNTSRPG---EEQRLEAVK---PMR--ILSGVDTGEAVVFTGATED--------RVALYALDGG  142 (582)
T ss_dssp             EEEECSTTSCCEEEEEEETTSTT---CCEECTTSC---SBE--EEEEEECSSCEEEEEECSS--------CEEEEEEETT
T ss_pred             EEeccCCCCcceEEEEEeccCCC---ccccccCCC---Cce--eeeeCCCCCeEEEEecCCC--------CceEEEccCC
Confidence            87654   2  28999998  54   345777652   223  4589999999888755432        2335588898


Q ss_pred             CccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcC
Q 008927          232 NIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK  311 (548)
Q Consensus       232 ~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspD  311 (548)
                      +   .++|+....  ..+.|||||++|++.+.+..+    ...||++|+++ |+   .+.++...    ..+..|.||||
T Consensus       143 ~---~~~l~~~~~--~~~~~spDG~~la~~~~~~~~----~~~i~~~d~~~-g~---~~~l~~~~----~~~~~~~~SpD  205 (582)
T 3o4h_A          143 G---LRELARLPG--FGFVSDIRGDLIAGLGFFGGG----RVSLFTSNLSS-GG---LRVFDSGE----GSFSSASISPG  205 (582)
T ss_dssp             E---EEEEEEESS--CEEEEEEETTEEEEEEEEETT----EEEEEEEETTT-CC---CEEECCSS----CEEEEEEECTT
T ss_pred             c---EEEeecCCC--ceEEECCCCCEEEEEEEcCCC----CeEEEEEcCCC-CC---ceEeecCC----CccccceECCC
Confidence            8   788876665  678999999999988755321    25699999984 54   34555543    45688999999


Q ss_pred             CcEEEEEeCCCCeeeEEEEeccCCeeEeeccc-ccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCC
Q 008927          312 GELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG  390 (548)
Q Consensus       312 G~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~-~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~  390 (548)
                      |+.++.+++ .+..+||++|+++++.+ ++.. ..+...+. ..+.....|+|   |+ .++++...++..+||.+    
T Consensus       206 G~~l~~~~~-~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~sp---dg-~~~~~~~~~g~~~l~~~----  274 (582)
T 3o4h_A          206 MKVTAGLET-AREARLVTVDPRDGSVE-DLELPSKDFSSYR-PTAITWLGYLP---DG-RLAVVARREGRSAVFID----  274 (582)
T ss_dssp             SCEEEEEEC-SSCEEEEEECTTTCCEE-ECCCSCSHHHHHC-CSEEEEEEECT---TS-CEEEEEEETTEEEEEET----
T ss_pred             CCEEEEccC-CCeeEEEEEcCCCCcEE-EccCCCcChhhhh-hccccceeEcC---CC-cEEEEEEcCCcEEEEEE----
Confidence            994346666 77789999999998877 4421 11111111 00000112554   66 88888888998888765    


Q ss_pred             CceEeecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCceeeeeeEEEecCCCCCCccC---CCccCCeEEEee
Q 008927          391 HSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYK---SYFSLPELIEFP  467 (548)
Q Consensus       391 g~~~~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~~~~l~~~~~~~l~~---~~~~~pe~i~~~  467 (548)
                      |+...  .+...+..++..++.+++..++...|++||++|+++ +.      +.|      .+++   ..++++|.++|+
T Consensus       275 g~~~~--~~~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~~~-~~------~~l------~~~~~~~~~~~~~~~~~~~  339 (582)
T 3o4h_A          275 GERVE--APQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPSGE-PL------LEG------GLPEDLRRSIAGSRLVWVE  339 (582)
T ss_dssp             TEEEC--CCSSEEEEEEEETTEEEEEEEETTEEEEEEEETTCC-EE------ECC------CCCHHHHHTEEEEEEEEEE
T ss_pred             CCeec--cCCCceEEEEecCCEEEEEEcCCCCCCeEEEEcCCC-ce------EEE------ecCCccccccCcceEEEEE
Confidence            55443  222344444222666778888888999999998754 42      222      2343   667788999999


Q ss_pred             ccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCChhhhhcc
Q 008927          468 TEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSVPSTSI  546 (548)
Q Consensus       468 s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~~f~~ai  546 (548)
                      +. ||.++++++|.|.+  +    .+++|+||++||||.......|....++|+++||+|+.+||||++|||+.|.++.
T Consensus       340 ~~-~g~~i~~~~~~p~~--~----~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~~~G~s~~~~~  411 (582)
T 3o4h_A          340 SF-DGSRVPTYVLESGR--A----PTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKI  411 (582)
T ss_dssp             CT-TSCEEEEEEEEETT--S----CSSEEEEEEECSSSSCCCCSSCCHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTT
T ss_pred             CC-CCCEEEEEEEcCCC--C----CCCCcEEEEECCCcccccccccCHHHHHHHhCCCEEEEeccCCCCCCchhHHhhh
Confidence            98 99999999999965  3    2378999999999999888889999999999999999999999999999988764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=100.00  E-value=6.5e-32  Score=301.97  Aligned_cols=412  Identities=13%  Similarity=0.107  Sum_probs=273.5

Q ss_pred             ccCceEEcC-CCcEEEEEecCCCC---CceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCC
Q 008927           90 RLGGTAVDG-HGRLIWLESRPTEA---GRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ  165 (548)
Q Consensus        90 ~~~~~~~sp-g~~i~~~~~~~~e~---gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~  165 (548)
                      .+..+.+|| |+.|++........   ....|+.++..+ ++.++|+..... ...+   ...+|+|||+.|+|..+  +
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~l~~~~~~-~~~~---~~~~~SPdG~~la~~~~--~  134 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH-GDPQSLDPPEVS-NAKL---QYAGWGPKGQQLIFIFE--N  134 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS-CCCEECCCTTCC-SCCC---SBCCBCSSTTCEEEEET--T
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCC-CceEeccCCccc-cccc---cccEECCCCCEEEEEEC--C
Confidence            367899999 99999886432111   124565555543 456666643211 0011   13479999999999984  6


Q ss_pred             eEEEEeCCCCCCCceecCCCCCCCCc----------------eecceeeCCCCCEEEEEEeccCC---------------
Q 008927          166 RLYKHSIDSKDSSPLPITPDYGEPLV----------------SYADGIFDPRFNRYVTVREDRRQ---------------  214 (548)
Q Consensus       166 ~Ly~~~~~~~~~~~~~lT~~~~~~~~----------------~~~~~~~SpDG~~i~~v~~~~~~---------------  214 (548)
                      +||++++++  ++.++++.... ...                ++..+.|||||+.|+|.+.+...               
T Consensus       135 ~i~~~~~~~--g~~~~~~~~~~-~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~  211 (723)
T 1xfd_A          135 NIYYCAHVG--KQAIRVVSTGK-EGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYP  211 (723)
T ss_dssp             EEEEESSSS--SCCEEEECCCB-TTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSC
T ss_pred             eEEEEECCC--CceEEEecCCC-CCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCC
Confidence            899999998  78888876421 111                12468899999999998654310               


Q ss_pred             ----------CCCCceeEEEEEECCCCCccCcEEeeec------CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEE
Q 008927          215 ----------DALNSTTEIVAIALNGQNIQEPKVLVSG------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG  278 (548)
Q Consensus       215 ----------~~~~~~~~l~~idl~~g~~~~~~~L~~~------~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~  278 (548)
                                +.......|+++|+.+++.  .+.|...      ......+.|||||+.|++......    ....|++.
T Consensus       212 ~~~~~~~~~~G~~~~~~~l~~~d~~~~~~--~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~----~~~~i~~~  285 (723)
T 1xfd_A          212 TVKPYHYPKAGSENPSISLHVIGLNGPTH--DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ----NVSILTLC  285 (723)
T ss_dssp             CCEEEECCBTTSCCCEEEEEEEESSSSCC--CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS----CEEEEEEE
T ss_pred             cceeccCCCCCCCCCeeEEEEEECCCCce--eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC----CeEEEEEE
Confidence                      0011245899999999871  2556543      234567899999998865543221    24689999


Q ss_pred             EecCCCceeeeEEEcCCCCCcccCC----cCceECcCCc-EEEE-EeCCCC----eeeEEEEe-ccCCe---eEeecccc
Q 008927          279 YISENGDVYKRVCVAGFDPTIVESP----TEPKWSSKGE-LFFV-TDRKNG----FWNLHKWI-ESNNE---VLAIYSLD  344 (548)
Q Consensus       279 ~~~~~g~~~~~~~l~~~~~~~~~~~----~~~~wspDG~-L~~~-sd~~~g----~~~Ly~~d-~~~g~---~~~l~~~~  344 (548)
                      |+++ |+.  ..++.... .  ..+    ..+.|||||+ |++. +++ .+    ..+||.++ ..+++   .+.|+...
T Consensus       286 d~~~-g~~--~~~~~~~~-~--~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~  358 (723)
T 1xfd_A          286 DATT-GVC--TKKHEDES-E--AWLHRQNEEPVFSKDGRKFFFIRAIP-QGGRGKFYHITVSSSQPNSSNDNIQSITSGD  358 (723)
T ss_dssp             ETTT-CCE--EEEEEEEC-S--SCCCCCCCCCEECTTSCSEEEEEEEC-CSSSSCEEEEEEECSSCCSSSCCCCBSCCSS
T ss_pred             eCCC-Ccc--eEEEEecc-C--CEEeccCCCceEcCCCCeEEEEEecc-cCCCcceeEEEEEeccCCCCccceeEeecCC
Confidence            9984 542  22222111 0  111    3789999999 8887 665 56    77899999 56666   66666321


Q ss_pred             cccCCCcccccCcceeeeeecCCCCEEEEEEEeC--CeEEEEEEECCCC-ceEeecCC---CceeE--eeeecCCEEEEE
Q 008927          345 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN--GRSYLGILDDFGH-SLSLLDIP---FTDID--NITLGNDCLFVE  416 (548)
Q Consensus       345 ~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~--g~~~L~~~dl~~g-~~~~l~~~---~~~~~--~~s~d~~~l~~~  416 (548)
                      .+..        ....|+|   |++.|++....+  +..+||.+++.++ +.+.|+..   ...+.  .+++|++.+++.
T Consensus       359 ~~~~--------~~~~~sp---dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          359 WDVT--------KILAYDE---KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             SCEE--------EEEEEET---TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             eEEE--------eeeEEcC---CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence            1110        1134555   889998887765  7788999998765 45556532   22232  347899999999


Q ss_pred             EecCCCCCeEEEEEcCCCceeeeeeEEEecCCC--CCCccCCCccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCC
Q 008927          417 GASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSP--DTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEK  494 (548)
Q Consensus       417 ~ss~~~p~~l~~~d~~~~~~~~~~~~~~l~~~~--~~~l~~~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~  494 (548)
                      .++++.|..++. +...++.     ..++....  ...+.+..+..+|.++|++. || ++++++|.|.+  ++  ++++
T Consensus       428 ~~~~~~p~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g-~l~~~~~~P~~--~~--~~~~  495 (723)
T 1xfd_A          428 CEGPGVPMVTVH-NTTDKKK-----MFDLETNEHVKKAINDRQMPKVEYRDIEID-DY-NLPMQILKPAT--FT--DTTH  495 (723)
T ss_dssp             CCSSSSCCEEEE-ETTTCCE-----EEEEECCHHHHHHHHTSCCCBCCBCCEEET-TE-EECCBEEBCSS--CC--SSSC
T ss_pred             ccCCCCCeEEEE-ECCCCCE-----EEEeccChhhhhhhhhccCCCceEEEEEcC-Cc-eEEEEEEeCCC--CC--CCCc
Confidence            988888876554 6544432     12232210  01244566788999999998 99 99999999965  43  3578


Q ss_pred             CcEEEEEccCccccc-cCcc--ChHHHHHHhcCcEEEEeCCCCCCCCChhhhhccc
Q 008927          495 PPLLVKSHGGPTSEA-RGIL--NLSIQYWTSRGWAFVDVNYGGSTGLSSVPSTSIF  547 (548)
Q Consensus       495 ~Pliv~iHGGP~~~~-~~~~--~~~~Q~~asrGyaVl~~NyRGStGyG~~f~~ai~  547 (548)
                      +|+||++||||..+. ...|  .+..++|+++||+|+.+|+||+.++|++|.++.+
T Consensus       496 ~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~g~~~~~~~~  551 (723)
T 1xfd_A          496 YPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVR  551 (723)
T ss_dssp             EEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTT
T ss_pred             cCEEEEEcCCCCccccCccccccHHHHHhhcCCEEEEEECCCCCccccHHHHHHHH
Confidence            999999999998753 3344  3667888899999999999999999999876653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=100.00  E-value=9e-31  Score=292.17  Aligned_cols=407  Identities=14%  Similarity=0.116  Sum_probs=275.7

Q ss_pred             CccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEE
Q 008927           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY  168 (548)
Q Consensus        89 ~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly  168 (548)
                      ..+..+.+||.+.+++..     ++.  |+.++..+ ++.++++.....+       ....|+|||+.|+|..  +++||
T Consensus        82 ~~v~~~~~spd~~~~~~~-----~~~--i~~~d~~~-~~~~~l~~~~~~~-------~~~~~SpdG~~la~~~--~~~i~  144 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLFT-----QGG--LVGFDMLA-RKVTYLFDTNEET-------ASLDFSPVGDRVAYVR--NHNLY  144 (706)
T ss_dssp             CCCEEEEETTTTEEEEEE-----TTE--EEEEETTT-TEEEEEECCTTCC-------TTCEECTTSSEEEEEE--TTEEE
T ss_pred             cCceeEEECCCCeEEEEE-----CCE--EEEEECCC-CceEEccCCcccc-------cCCcCCCCCCEEEEEE--CCeEE
Confidence            356788999875555553     243  44444432 3566665432121       2357999999999986  67899


Q ss_pred             EEeCCCC---CCCceecCCCCCCCCc------------eecceeeCCCCCEEEEEEeccCC-------------------
Q 008927          169 KHSIDSK---DSSPLPITPDYGEPLV------------SYADGIFDPRFNRYVTVREDRRQ-------------------  214 (548)
Q Consensus       169 ~~~~~~~---~~~~~~lT~~~~~~~~------------~~~~~~~SpDG~~i~~v~~~~~~-------------------  214 (548)
                      ++++++.   .++.++++.... ...            +...+.|||||++|++.+.+...                   
T Consensus       145 v~~~~~~~~~~g~~~~~~~~~~-~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~  223 (706)
T 2z3z_A          145 IARGGKLGEGMSRAIAVTIDGT-ETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL  223 (706)
T ss_dssp             EEECBCTTSCCCCCEESCSCCB-TTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred             EEecCcccccCCCcEEeccCCC-CCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence            9998740   034667766421 000            13678899999999998633110                   


Q ss_pred             -----CCCCceeEEEEEECCCCCccCcEEeeec---CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCC-c
Q 008927          215 -----DALNSTTEIVAIALNGQNIQEPKVLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG-D  285 (548)
Q Consensus       215 -----~~~~~~~~l~~idl~~g~~~~~~~L~~~---~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g-~  285 (548)
                           +..+....|+++|+++++   .+.+..+   ......+.|||||++|++...+...   ....|++.|+++ | .
T Consensus       224 ~y~~~g~~~~~~~l~~~d~~~~~---~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~---~~~~v~~~d~~~-g~~  296 (706)
T 2z3z_A          224 YYPMAGTPSHHVTVGIYHLATGK---TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQ---NECKVNAYDAET-GRF  296 (706)
T ss_dssp             CCCBTTSCCCEEEEEEEETTTTE---EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTS---CEEEEEEEETTT-CCE
T ss_pred             eCCCCCCCCCeeEEEEEECCCCc---eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCC---CeeEEEEEECCC-Cce
Confidence                 001235789999999987   6666532   2345688999999999987654321   245899999884 5 3


Q ss_pred             eeeeEEEcCCCCCcccCCcCceECc--CCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeee
Q 008927          286 VYKRVCVAGFDPTIVESPTEPKWSS--KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQ  363 (548)
Q Consensus       286 ~~~~~~l~~~~~~~~~~~~~~~wsp--DG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~  363 (548)
                      .  ..+...........+..+.|+|  ||++++.+++ .|..+||.++.+++..+.|+.......        ....|+|
T Consensus       297 ~--~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~-~g~~~l~~~~~~~~~~~~l~~~~~~v~--------~~~~~sp  365 (706)
T 2z3z_A          297 V--RTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR-DGWNHLYLYDTTGRLIRQVTKGEWEVT--------NFAGFDP  365 (706)
T ss_dssp             E--EEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT-TSSCEEEEEETTSCEEEECCCSSSCEE--------EEEEECT
T ss_pred             e--eEEEEccCCCeECccCCceeecCCCCEEEEEEcc-CCccEEEEEECCCCEEEecCCCCeEEE--------eeeEEcC
Confidence            2  1222111100001235689999  9997777777 788899999987777777764211110        0134554


Q ss_pred             ecCCCCEEEEEEEeCC--eEEEEEEECCCCceEeecCCCcee-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCceeeee
Q 008927          364 SHGEKNLIACSYRQNG--RSYLGILDDFGHSLSLLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD  440 (548)
Q Consensus       364 ~~~d~~~l~~~~~~~g--~~~L~~~dl~~g~~~~l~~~~~~~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~  440 (548)
                         +++.|++....++  ..+||.+|+++++.+.|+...... -.+++|++.+++..++...|.+|+++|+++++.    
T Consensus       366 ---dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~~----  438 (706)
T 2z3z_A          366 ---KGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSH----  438 (706)
T ss_dssp             ---TSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCEE----
T ss_pred             ---CCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCeE----
Confidence               7888988876554  578999999998888777433222 234789999999988888999999999987762    


Q ss_pred             eEEEecCCCCCCccCCCccCCeEEEeeccCCC-eEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccccc-CccCh---
Q 008927          441 FKVVWSSSPDTLKYKSYFSLPELIEFPTEVPG-QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNL---  515 (548)
Q Consensus       441 ~~~~l~~~~~~~l~~~~~~~pe~i~~~s~~dG-~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~-~~~~~---  515 (548)
                        ..++..  ..+....++.++.+++++. || .+++++++.|.+  ++  +++++|+||++||||.++.. ..|..   
T Consensus       439 --~~~~~~--~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~P~~--~~--~~~~~p~iv~~HGg~~~~~~~~~~~~~~~  509 (706)
T 2z3z_A          439 --TLLEAK--NPDTGYAMPEIRTGTIMAA-DGQTPLYYKLTMPLH--FD--PAKKYPVIVYVYGGPHAQLVTKTWRSSVG  509 (706)
T ss_dssp             --EEEECC--------CCCCEEEEEEECT-TSSSEEEEEEECCTT--CC--TTSCEEEEEECCCCTTCCCCCSCC----C
T ss_pred             --eecccc--chhhhcCCCCcEEEEEEcC-CCCEEEEEEEEeCCC--CC--CCCCccEEEEecCCCCceeeccccccCch
Confidence              233332  2355566788899999998 99 899999999965  54  35788999999999998753 34543   


Q ss_pred             -HHHHHHhcCcEEEEeCCCCCCCCChhhhhccc
Q 008927          516 -SIQYWTSRGWAFVDVNYGGSTGLSSVPSTSIF  547 (548)
Q Consensus       516 -~~Q~~asrGyaVl~~NyRGStGyG~~f~~ai~  547 (548)
                       ..++|+++||+|+.+|+||+.++|+.|.++++
T Consensus       510 ~~~~~la~~G~~v~~~d~rG~g~s~~~~~~~~~  542 (706)
T 2z3z_A          510 GWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIH  542 (706)
T ss_dssp             CHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTT
T ss_pred             HHHHHHHhCCcEEEEEecCCCcccchhHHHHHh
Confidence             68999999999999999999999999877654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=100.00  E-value=6.9e-31  Score=293.86  Aligned_cols=402  Identities=10%  Similarity=0.045  Sum_probs=268.9

Q ss_pred             ccCceEEcC-CCcEEEEEecCCC---CCceEEEEcCCCCCCCC---cccCCCCCCccccceeeCCeeeEEECCEEEEEeC
Q 008927           90 RLGGTAVDG-HGRLIWLESRPTE---AGRGVLVKEPAKAGDEP---SDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNY  162 (548)
Q Consensus        90 ~~~~~~~sp-g~~i~~~~~~~~e---~gr~~l~~~~~~~~~~~---~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~  162 (548)
                      .+..+.+|| |+.|++.......   .+...|+.++..+ ++.   ++|+..   +       ...+|+|||+.|+|.. 
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~-g~~~~~~~l~~~---~-------~~~~~SPDG~~la~~~-  128 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN-GEFVRGNELPRP---I-------QYLCWSPVGSKLAYVY-  128 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-TEECCSSCCCSS---B-------CCEEECSSTTCEEEEE-
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC-CccccceecCcc---c-------ccceECCCCCEEEEEE-
Confidence            467899999 9999998653100   1134566666543 344   444311   1       2358999999999997 


Q ss_pred             CCCeEEEEeCCCCCCCceecCCCCCCCC---------------ceecceeeCCCCCEEEEEEeccCCC------------
Q 008927          163 KDQRLYKHSIDSKDSSPLPITPDYGEPL---------------VSYADGIFDPRFNRYVTVREDRRQD------------  215 (548)
Q Consensus       163 ~~~~Ly~~~~~~~~~~~~~lT~~~~~~~---------------~~~~~~~~SpDG~~i~~v~~~~~~~------------  215 (548)
                       +++||+.++.+  ++.++||.......               .+...+.|||||+.|+|.+.+....            
T Consensus       129 -~~~i~~~~~~~--g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~  205 (719)
T 1z68_A          129 -QNNIYLKQRPG--DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQ  205 (719)
T ss_dssp             -TTEEEEESSTT--SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSS
T ss_pred             -CCeEEEEeCCC--CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCC
Confidence             56899999987  77888875421000               0124789999999999986542110            


Q ss_pred             -------------CCCceeEEEEEECCCCCccCcE---Eee------ecCCceeeeEECCCCCEEEEEEecCCCCCCCCc
Q 008927          216 -------------ALNSTTEIVAIALNGQNIQEPK---VLV------SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA  273 (548)
Q Consensus       216 -------------~~~~~~~l~~idl~~g~~~~~~---~L~------~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~  273 (548)
                                   .......|+++|+++++   ..   .+.      ........+.|||||+ +++...+...   ...
T Consensus       206 ~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~---~~~  278 (719)
T 1z68_A          206 YPRTINIPYPKAGAKNPVVRIFIIDTTYPA---YVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQ---NVS  278 (719)
T ss_dssp             SCEEEEEECCBTTSCCCEEEEEEEESSCHH---HHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESST---TEE
T ss_pred             CccceeecCCCCCCCCCeeEEEEEECCCCC---ccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEecccc---CeE
Confidence                         01134589999999886   32   332      1233467889999965 6655433221   245


Q ss_pred             eEEEEE----ecCCCceeeeEEE----cCCCCCcccCCc-----CceECcCCc-EEEE-EeCCCCeeeEEEEeccCCeeE
Q 008927          274 ELWVGY----ISENGDVYKRVCV----AGFDPTIVESPT-----EPKWSSKGE-LFFV-TDRKNGFWNLHKWIESNNEVL  338 (548)
Q Consensus       274 ~L~v~~----~~~~g~~~~~~~l----~~~~~~~~~~~~-----~~~wspDG~-L~~~-sd~~~g~~~Ly~~d~~~g~~~  338 (548)
                      +|++++    ++ +|+..  .++    .+..    ..+.     .+.|+|||+ |++. +++ .|..+||++++++++.+
T Consensus       279 ~l~~~d~~~~~~-~g~~~--~~~~~~~~~~~----~~~~~~~~~~~~~spdg~~l~~~~~~~-~g~~~l~~~~~~~~~~~  350 (719)
T 1z68_A          279 VLSICDFREDWQ-TWDCP--KTQEHIEESRT----GWAGGFFVSTPVFSYDAISYYKIFSDK-DGYKHIHYIKDTVENAI  350 (719)
T ss_dssp             EEEEEEECSSSS-SEECC--GGGEEEEECSS----SCSSSSSCCCCEECTTSSCEEEEEECT-TSCEEEEEESSCSTTCE
T ss_pred             EEEEEcccCCCC-CCceE--EEEecccccCC----ceEccccCCccEECCCCCeEEEEEEcc-CCceEEEEEECCCCceE
Confidence            799999    65 34321  112    1222    2333     789999999 8775 555 88899999999888877


Q ss_pred             eecccccccCCCcccccCcceeeeeecCCCCEEEEEEEe----CCeEEEEEEECCCC--ceEeecCC----CceeE--ee
Q 008927          339 AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ----NGRSYLGILDDFGH--SLSLLDIP----FTDID--NI  406 (548)
Q Consensus       339 ~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~----~g~~~L~~~dl~~g--~~~~l~~~----~~~~~--~~  406 (548)
                      .|+....++..         ..+.    +++.|++....    .+..+||.++++++  +.+.|+..    ...+.  .+
T Consensus       351 ~lt~~~~~v~~---------~~~~----d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~  417 (719)
T 1z68_A          351 QITSGKWEAIN---------IFRV----TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASF  417 (719)
T ss_dssp             ECSCSSSCEEE---------EEEE----CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEE
T ss_pred             ecccCceEEEE---------EEEE----eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEE
Confidence            77743221111         1122    57889988866    57789999998766  45666532    11222  34


Q ss_pred             eecCCEEEEEEecCCCCCeEEEEEcCCCceeeeeeEEEecCCCC---CCccCCCccCCeEEEeeccCCCeEEEEEEEcCC
Q 008927          407 TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPD---TLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPS  483 (548)
Q Consensus       407 s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~~~~l~~~~~---~~l~~~~~~~pe~i~~~s~~dG~~i~g~l~~P~  483 (548)
                      +++++.+++..++++.| .++++|+++++..     +++. .+.   ..++...++.+|.+++++. | .++++++|.|+
T Consensus       418 s~dg~~l~~~~s~~~~p-~~~l~d~~~g~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~P~  488 (719)
T 1z68_A          418 SDYAKYYALVCYGPGIP-ISTLHDGRTDQEI-----KILE-ENKELENALKNIQLPKEEIKKLEVD-E-ITLWYKMILPP  488 (719)
T ss_dssp             CGGGSSEEEEECCBSSC-EEEEECSSSCCEE-----EEEE-CCHHHHHHTTSBCCCEEEEEEEEET-T-EEEEEEEEECT
T ss_pred             CCCCCEEEEEcCCCCCC-eEEEEECCCCCEE-----EEee-cchhhhhhhccccCCceEEEEEecC-C-eEEEEEEEeCC
Confidence            78889888888877766 6888898777632     2232 222   1345566778899999997 7 99999999996


Q ss_pred             CCCCCCCCCCCCcEEEEEccCccccc-cCccC--hHHHHHHhcCcEEEEeCCCCCCCCChhhhhccc
Q 008927          484 NPIYQASPEEKPPLLVKSHGGPTSEA-RGILN--LSIQYWTSRGWAFVDVNYGGSTGLSSVPSTSIF  547 (548)
Q Consensus       484 ~~~~~~~~~~~~Pliv~iHGGP~~~~-~~~~~--~~~Q~~asrGyaVl~~NyRGStGyG~~f~~ai~  547 (548)
                      +  ++  +++++|+||++||||.... ...|.  +..++++++||+|+.+|+||+.++|++|.++++
T Consensus       489 ~--~~--~~~~~p~vl~~hG~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~~~~~~~~~~  551 (719)
T 1z68_A          489 Q--FD--RSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVY  551 (719)
T ss_dssp             T--CC--SSSCEEEEEEECCCTTBCCCCCCCCCCHHHHHHHTTCCEEEEEECTTBSSSCHHHHGGGT
T ss_pred             C--CC--CCCCccEEEEECCCCCcCcccccchhhHHHHHHhcCCeEEEEEcCCCCCCCchhhHHHHh
Confidence            5  43  3578899999999998764 34454  333444689999999999999999999876553

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=99.93  E-value=2.8e-23  Score=229.31  Aligned_cols=418  Identities=9%  Similarity=-0.013  Sum_probs=261.1

Q ss_pred             HHHhcCCCccCceEEcCCCcEEEEEecCCCCCceEEEEcC-C----CCCCCCcccCC-CCCCcc-ccceeeCCee-eEEE
Q 008927           82 DVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEP-A----KAGDEPSDITP-KEYAVR-TTAQEYGGGA-FRIF  153 (548)
Q Consensus        82 ~~l~~~~~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~-~----~~~~~~~~lt~-~~~~~r-~~v~~ygg~~-~~~~  153 (548)
                      ..++....++..|..- |+++|+.-.... .-+ .||+.. .    .+..+.+-|+. ..++.. ..-+.+.|.+ ++++
T Consensus        64 ~~~~~~~~ri~~p~~~-g~~~y~f~~d~~-~~~-gl~rrt~~~~~~~~~p~wevllD~d~l~~~~g~~~~~~g~~~~~~~  140 (711)
T 4hvt_A           64 ETIFYDQRKTPYGVIR-KGYVYNFWMDDK-NPQ-GLWRRTLVDNYSKDKPNWEVLIDFDKLSKKIGKKVAYRGVSNCFQN  140 (711)
T ss_dssp             HHHHTCTTSCCCCEEE-TTEEEEEECCSS-CSS-CEEEEEEHHHHTSSSCCCEEEEEHHHHHHHHTSCEEEEEEEECSSS
T ss_pred             HHHhccccccCCcEEE-CCEEEEEEecCC-CCc-EEEEEccchhcccCCCCcEEEeccccccccCCCcEEEeceeecCCC
Confidence            3445543468777777 999998865432 224 677652 1    00023333332 212211 1102344544 6678


Q ss_pred             CCEEEEEeCCCC----eEEEEeCCCCCCCceecCCCCC-CC------CceecceeeCCCCCEEEEEEeccCCC--CCCce
Q 008927          154 GDTVIFSNYKDQ----RLYKHSIDSKDSSPLPITPDYG-EP------LVSYADGIFDPRFNRYVTVREDRRQD--ALNST  220 (548)
Q Consensus       154 ~~~i~F~~~~~~----~Ly~~~~~~~~~~~~~lT~~~~-~~------~~~~~~~~~SpDG~~i~~v~~~~~~~--~~~~~  220 (548)
                      ++++++.-.+.|    .+..+|+.+  ++  .|..... ..      .+++..++|. |++.+++........  .....
T Consensus       141 ~~~~~~~ls~~G~d~~~~~~~d~~t--~~--~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~~  215 (711)
T 4hvt_A          141 PNRYLISMSFGGKDEMFFREWDLEK--KD--FVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLYP  215 (711)
T ss_dssp             TTEEEEEEEETTCSEEEEEEEETTT--TE--ECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSSB
T ss_pred             CCEEEEEeCCCCCceeEEEEEECCc--CC--cCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCCC
Confidence            888777743332    677888876  32  2222110 00      1245666887 667765532222111  11233


Q ss_pred             eEEEEEECCCCCccCcEEeeecC--CceeeeEECCCCCE---EEEEEecCCCCCCCCceEEEEEecCC-CceeeeEEEcC
Q 008927          221 TEIVAIALNGQNIQEPKVLVSGS--DFYAFPRMDPRGER---MAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAG  294 (548)
Q Consensus       221 ~~l~~idl~~g~~~~~~~L~~~~--~~~~~p~~SPDGk~---La~~~~~~~~~p~~~~~L~v~~~~~~-g~~~~~~~l~~  294 (548)
                      ..+|..-+-+... +.+.|.++.  +++..+..++|++.   +.++.....   +..+++|+.+++.. ++   ...+.-
T Consensus       216 ~~v~~~~~Gt~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~---~~~l~~  288 (711)
T 4hvt_A          216 NSLYIWKRGESIE-KAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKD---FYNYDNYILDTKYKNLK---LQKINM  288 (711)
T ss_dssp             CEEEEEETTSCGG-GCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESS---SSCEEEEEEECSSSSCE---EEECCS
T ss_pred             CEEEEEECCCChH-HCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecc---cCceeEEEEcCCCCCCc---ceEeec
Confidence            5788888876531 245666543  34556778899885   234542211   23589999987521 32   233322


Q ss_pred             CCCCcccCCcCceECcCCcEEEEEeCC-------CCeeeEEEEeccCC--------eeEe-ecccccccCCCcccccCcc
Q 008927          295 FDPTIVESPTEPKWSSKGELFFVTDRK-------NGFWNLHKWIESNN--------EVLA-IYSLDAEFSRPLWVFGINS  358 (548)
Q Consensus       295 ~~~~~~~~~~~~~wspDG~L~~~sd~~-------~g~~~Ly~~d~~~g--------~~~~-l~~~~~d~~~p~w~~~~~~  358 (548)
                      ..      ...+.+..+|++|+.....       .....|+.++++++        +.+. +++.        +......
T Consensus       289 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~  354 (711)
T 4hvt_A          289 PS------DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPT--------ANEVFNF  354 (711)
T ss_dssp             CT------TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCC--------TTEEEEE
T ss_pred             CC------cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCC--------CCCeEEE
Confidence            11      1234567788877754220       12345899988664        2333 3321        1111123


Q ss_pred             eeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCc--eEe-ecCCC-ceeEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 008927          359 YEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS--LSL-LDIPF-TDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLD  432 (548)
Q Consensus       359 ~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~--~~~-l~~~~-~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~  432 (548)
                      +.+.     ++.|++.+.+++..+|+++++.+|+  .+. +..+. +.+..+  +.+++.+++..++.+.|+++|++|+.
T Consensus       355 ~~~~-----~~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          355 ISTT-----KDRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             EEEC-----SSCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             EEEE-----CCEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            4453     4578889999999999999988774  445 55553 334433  46778899999999999999999987


Q ss_pred             CCceeeeeeEEEecCCCCCCccCCCccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCc
Q 008927          433 DHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI  512 (548)
Q Consensus       433 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~  512 (548)
                       ++.      ++|+..+ ..+++..+ .+|.++|++. ||.+|+++|++|++  ++  +++++|+||++||||..+..+.
T Consensus       430 -~~~------~~l~~~~-~~~~~~~~-~~e~v~~~s~-DG~~i~~~l~~P~~--~~--~~~~~P~vl~~HGG~~~~~~~~  495 (711)
T 4hvt_A          430 -HEL------KIIRKAL-YSFDSENY-VLEQKEATSF-DGVKIPYFLVYKKG--IK--FDGKNPTLLEAYGGFQVINAPY  495 (711)
T ss_dssp             -SCE------EEEECCS-SCCCGGGE-EEEEEEEECT-TSCEEEEEEEEETT--CC--CSSCCCEEEECCCCTTCCCCCC
T ss_pred             -CcE------EEEecCC-cccCcccC-eeEEEEEECC-CCeEEEEEEEecCC--CC--CCCCccEEEEECCCCCCCCCCc
Confidence             653      3454543 45566666 6899999998 99999999999976  32  3578999999999999999999


Q ss_pred             cChHH-HHHHhcCcEEEEeCCCCCCCCChhhhhccc
Q 008927          513 LNLSI-QYWTSRGWAFVDVNYGGSTGLSSVPSTSIF  547 (548)
Q Consensus       513 ~~~~~-Q~~asrGyaVl~~NyRGStGyG~~f~~ai~  547 (548)
                      |+... |+|+++||+|+.+|||||+|||++|.++..
T Consensus       496 ~~~~~~q~la~~Gy~Vv~~d~RGsg~~G~~~~~~~~  531 (711)
T 4hvt_A          496 FSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQ  531 (711)
T ss_dssp             CCHHHHHHTGGGTCEEEEECCTTSSTTCHHHHHTTS
T ss_pred             ccHHHHHHHHHCCCEEEEEeCCCCCCcchhHHHhhh
Confidence            98776 699999999999999999999999988754

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.89  E-value=5.5e-22  Score=204.07  Aligned_cols=332  Identities=11%  Similarity=0.110  Sum_probs=216.4

Q ss_pred             cCCCCCCCcCCHHHHhcCC--------CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccc
Q 008927           70 APYGSWKSPLTADVVSGAS--------KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRT  140 (548)
Q Consensus        70 ~~~g~w~spit~~~l~~~~--------~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~  140 (548)
                      .++..|..|.+-..+....        ..+.+|++|| |++|+|...+   +|..+||.++..+ ++.++++....... 
T Consensus         9 ~~~~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~---~g~~~l~~~d~~~-g~~~~lt~~~~~~~-   83 (388)
T 3pe7_A            9 LTFDTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAF---DGPWNYYLLDLNT-QVATQLTEGRGDNT-   83 (388)
T ss_dssp             CCCEEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT---TSSCEEEEEETTT-CEEEECCCSSCBCS-
T ss_pred             ccceEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcC---CCCceEEEEeCCC-CceEEeeeCCCCCc-
Confidence            4566666665544333321        2233488999 9999999753   5777898887764 57888886432110 


Q ss_pred             cceeeCCeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCC-----
Q 008927          141 TAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-----  215 (548)
Q Consensus       141 ~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~-----  215 (548)
                           -+..|+|||+.|+|... +..||++++++  ++.+.++.... .........++|||+.|+++.....+.     
T Consensus        84 -----~~~~~spdg~~l~~~~~-~~~l~~~d~~~--g~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~  154 (388)
T 3pe7_A           84 -----FGGFLSPDDDALFYVKD-GRNLMRVDLAT--LEENVVYQVPA-EWVGYGTWVANSDCTKLVGIEIRREDWVPLTD  154 (388)
T ss_dssp             -----SSCEECTTSSEEEEEET-TTEEEEEETTT--CCEEEEEECCT-TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred             -----cceEEcCCCCEEEEEeC-CCeEEEEECCC--Ccceeeeechh-hcccccceeECCCCCeeccccccCcccccccc
Confidence                 13479999999999983 35899999998  77777765421 111122334699999988765432110     


Q ss_pred             --------CCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECC-CCCEEEEEEecCCCCCCCCceEEEEEecCCCce
Q 008927          216 --------ALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDV  286 (548)
Q Consensus       216 --------~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SP-DGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~  286 (548)
                              .......|+++|+++++   .+.|+........+.||| ||++|+|+.....+  ....+||++++++ ++ 
T Consensus       155 ~~~~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~--~~~~~l~~~d~~~-~~-  227 (388)
T 3pe7_A          155 WKKFHEFYFTKPCCRLMRVDLKTGE---STVILQENQWLGHPIYRPYDDSTVAFCHEGPHD--LVDARMWLINEDG-TN-  227 (388)
T ss_dssp             HHHHHHHGGGCCCEEEEEEETTTCC---EEEEEEESSCEEEEEEETTEEEEEEEEECSCTT--TSSCSEEEEETTS-CC-
T ss_pred             cchhhhhhccCCcceEEEEECCCCc---eEEeecCCccccccEECCCCCCEEEEEEecCCC--CCcceEEEEeCCC-Cc-
Confidence                    01134789999999998   888887777788999999 99999998742110  0145899999873 43 


Q ss_pred             eeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCee--eEEEEeccCCeeEeecccccccCCCcccccCcceeeee
Q 008927          287 YKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW--NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQ  363 (548)
Q Consensus       287 ~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~--~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~  363 (548)
                        .+.+......  ..+..+.|||||+ |+|+++. .+..  .||++|+++++.+.|+.... .....+...  ...|+|
T Consensus       228 --~~~l~~~~~~--~~~~~~~~spdg~~l~~~~~~-~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~~~--~~~~sp  299 (388)
T 3pe7_A          228 --MRKVKTHAEG--ESCTHEFWVPDGSALVYVSYL-KGSPDRFIYSADPETLENRQLTSMPA-CSHLMSNYD--GSLMVG  299 (388)
T ss_dssp             --CEESCCCCTT--EEEEEEEECTTSSCEEEEEEE-TTCCCEEEEEECTTTCCEEEEEEECC-EEEEEECTT--SSEEEE
T ss_pred             --eEEeeeCCCC--cccccceECCCCCEEEEEecC-CCCCcceEEEEecCCCceEEEEcCCC-ceeeeecCC--CCeEcc
Confidence              3444443201  2456789999999 9898876 4544  49999999998877764221 000011111  123555


Q ss_pred             ecCCCCEEEEEEEe------CCeEEEEEEECCCCceEeecCCCc-----------eeE--eeeecCCEEEEEEecCCCCC
Q 008927          364 SHGEKNLIACSYRQ------NGRSYLGILDDFGHSLSLLDIPFT-----------DID--NITLGNDCLFVEGASGVEPS  424 (548)
Q Consensus       364 ~~~d~~~l~~~~~~------~g~~~L~~~dl~~g~~~~l~~~~~-----------~~~--~~s~d~~~l~~~~ss~~~p~  424 (548)
                         |++.|++....      .+...|+++|+++++.++|+....           .+.  .+++|++.|+|.... ....
T Consensus       300 ---dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~-~g~~  375 (388)
T 3pe7_A          300 ---DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV-HGKP  375 (388)
T ss_dssp             ---EECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT-TSSC
T ss_pred             ---CCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecC-CCce
Confidence               78888876643      567789999999999888875432           122  347899999887654 4567


Q ss_pred             eEEEEEcCCC
Q 008927          425 SVAKVTLDDH  434 (548)
Q Consensus       425 ~l~~~d~~~~  434 (548)
                      .||++++..+
T Consensus       376 ~l~~~~l~~~  385 (388)
T 3pe7_A          376 ALYLATLPES  385 (388)
T ss_dssp             EEEEEECCGG
T ss_pred             eEEEEECChh
Confidence            8999998654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.87  E-value=2.3e-20  Score=209.54  Aligned_cols=318  Identities=9%  Similarity=0.041  Sum_probs=208.0

Q ss_pred             CcCCHHHHhcC--CCccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCC-CCCCccccceeeCCeeeEEE
Q 008927           77 SPLTADVVSGA--SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITP-KEYAVRTTAQEYGGGAFRIF  153 (548)
Q Consensus        77 spit~~~l~~~--~~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~-~~~~~r~~v~~ygg~~~~~~  153 (548)
                      .+||.|+++..  ......++|+|++.+++..     +|...+|....   ++.+.++. ..+.... + ....-+|+||
T Consensus         3 ~~~tl~~~~~~~~~~~~~~~~w~~dg~~~~~~-----~~~i~~~~~~~---~~~~~~~~~~~~~~~~-~-~~~~~~~Spd   72 (740)
T 4a5s_A            3 KTYTLTDYLKNTYRLKLYSLRWISDHEYLYKQ-----ENNILVFNAEY---GNSSVFLENSTFDEFG-H-SINDYSISPD   72 (740)
T ss_dssp             EECCHHHHHHTCSCCCCCCEEECSSSEEEEEE-----TTEEEEEETTT---CCEEEEECTTTTTTCC-S-CCCEEEECTT
T ss_pred             CceeHHHHhcCcccccccccEECCCCcEEEEc-----CCcEEEEECCC---CceEEEEechhhhhhc-c-cccceEECCC
Confidence            46899999874  2446689999833444433     35555554432   34455543 2211100 0 0011367899


Q ss_pred             CCEEEEEeCC--------CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927          154 GDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       154 ~~~i~F~~~~--------~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      |+.|+|....        .+.+|++++.+  ++.++|+...    .....+.|||||++|+|+. +         ++||+
T Consensus        73 g~~l~~~~~~~~~~r~~~~~~~~~~d~~~--~~~~~l~~~~----~~~~~~~~SPdG~~la~~~-~---------~~i~~  136 (740)
T 4a5s_A           73 GQFILLEYNYVKQWRHSYTASYDIYDLNK--RQLITEERIP----NNTQWVTWSPVGHKLAYVW-N---------NDIYV  136 (740)
T ss_dssp             SSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSSCCC----TTEEEEEECSSTTCEEEEE-T---------TEEEE
T ss_pred             CCEEEEEECCeeeEEEccceEEEEEECCC--CcEEEcccCC----CcceeeEECCCCCEEEEEE-C---------CeEEE
Confidence            9999998742        15789999998  7788887652    2466789999999999984 2         37999


Q ss_pred             EECCCCCccCcEEeeecCC--c-----------------eeeeEECCCCCEEEEEEecCCCCC-----------------
Q 008927          226 IALNGQNIQEPKVLVSGSD--F-----------------YAFPRMDPRGERMAWIEWHHPNMP-----------------  269 (548)
Q Consensus       226 idl~~g~~~~~~~L~~~~~--~-----------------~~~p~~SPDGk~La~~~~~~~~~p-----------------  269 (548)
                      +|+.+++   .++|+....  .                 ...+.|||||++|||.+.+....+                 
T Consensus       137 ~~~~~~~---~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~  213 (740)
T 4a5s_A          137 KIEPNLP---SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKT  213 (740)
T ss_dssp             ESSTTSC---CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred             EECCCCc---eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcc
Confidence            9999998   788864321  1                 124889999999999875433111                 


Q ss_pred             -----------CCCceEEEEEecC---CCceeeeEEEcC------CCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEE
Q 008927          270 -----------WDKAELWVGYISE---NGDVYKRVCVAG------FDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH  328 (548)
Q Consensus       270 -----------~~~~~L~v~~~~~---~g~~~~~~~l~~------~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly  328 (548)
                                 .....|+++++++   +..+. .+.+..      ..    ..+..+.|||||+ +++..++..+...|+
T Consensus       214 ~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~----~~~~~~~wspdg~~~~~~~~r~~~~~~i~  288 (740)
T 4a5s_A          214 VRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT-SIQITAPASMLIGD----HYLCDVTWATQERISLQWLRRIQNYSVMD  288 (740)
T ss_dssp             EEEECCBTTSCCCEEEEEEEETTSCCSSSCCC-EEEECCCHHHHTSC----EEEEEEEEEETTEEEEEEEESSTTEEEEE
T ss_pred             eeecCCCCcCcCCeeEEEEEECCCCCCCCcce-EEEecCCccCCCCC----eEEEEEEEeCCCeEEEEEeCCCCCEEEEE
Confidence                       0112689999984   32111 222322      22    4567899999999 777777756677899


Q ss_pred             EEeccCCe-------eEeecccccccCCCccccc--CcceeeeeecCCCCEEE-EEEEeCCeEEEEEEECCCCceEeecC
Q 008927          329 KWIESNNE-------VLAIYSLDAEFSRPLWVFG--INSYEIIQSHGEKNLIA-CSYRQNGRSYLGILDDFGHSLSLLDI  398 (548)
Q Consensus       329 ~~d~~~g~-------~~~l~~~~~d~~~p~w~~~--~~~~~~~~~~~d~~~l~-~~~~~~g~~~L~~~dl~~g~~~~l~~  398 (548)
                      ++|+++|+       .+.+..+    ....|+..  .....|+|   |++.|+ +...++|..+||++|+++++.++|+.
T Consensus       289 ~~d~~tg~~~~~~~~~~~l~~~----~~~~~v~~~~~~~p~fsp---DG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~  361 (740)
T 4a5s_A          289 ICDYDESSGRWNCLVARQHIEM----STTGWVGRFRPSEPHFTL---DGNSFYKIISNEEGYRHICYFQIDKKDCTFITK  361 (740)
T ss_dssp             EEEEETTTTEEEECGGGCEEEE----CSSSCSSSSSCCCCEECT---TSSEEEEEEECTTSCEEEEEEETTCSSCEESCC
T ss_pred             EEECCCCccccceeEEEEeeec----cCCceEccCcCCCceEcC---CCCEEEEEEEcCCCceEEEEEECCCCceEeccc
Confidence            99998887       2223211    12234321  12345665   888887 66667899999999999999999987


Q ss_pred             CCceeEe-eeecCCEEEEEEec--C-CCCCeEEEEEcCCCc
Q 008927          399 PFTDIDN-ITLGNDCLFVEGAS--G-VEPSSVAKVTLDDHK  435 (548)
Q Consensus       399 ~~~~~~~-~s~d~~~l~~~~ss--~-~~p~~l~~~d~~~~~  435 (548)
                      +...+.. +..|++.|+|+++.  . ....+||++++++++
T Consensus       362 g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~  402 (740)
T 4a5s_A          362 GTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYT  402 (740)
T ss_dssp             SSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEE
T ss_pred             CCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCC
Confidence            6444433 35778999998865  1 345689999987654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.85  E-value=1.4e-19  Score=183.19  Aligned_cols=306  Identities=10%  Similarity=0.046  Sum_probs=197.4

Q ss_pred             CCcCCHHHHhcCCCccCceEEcCCCcEEEEEecCC---CCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEE
Q 008927           76 KSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT---EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI  152 (548)
Q Consensus        76 ~spit~~~l~~~~~~~~~~~~spg~~i~~~~~~~~---e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~  152 (548)
                      +.+++++++++. +.+.+|++. |++|+|+...+.   ......||.++..+ ++.++|  .  .+       ....|+|
T Consensus         3 ~~~~~~~~l~~~-~~~~~~~~d-G~~i~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l--~--~~-------~~~~~Sp   68 (347)
T 2gop_A            3 SIEWNEKTFAKF-AYLSDPRTK-GELVAYVLTKANLKDNKYENTIVIENLKN-NARRFI--E--NA-------TMPRISP   68 (347)
T ss_dssp             -------CCCCS-CEEEEEEEE-TTEEEEEEEEEETTTTEEEEEEEEEETTT-CCEEEE--E--SC-------EEEEECT
T ss_pred             cccCCcccceee-EEcccceEC-CcEEEEEEeecCcccCCccceEEEEeCCC-CceEEc--c--cC-------CCeEECC
Confidence            457899999987 889999995 999999865432   12367888887664 456665  1  11       1347999


Q ss_pred             ECCEEEEEeCCC----CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCC------------
Q 008927          153 FGDTVIFSNYKD----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDA------------  216 (548)
Q Consensus       153 ~~~~i~F~~~~~----~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~------------  216 (548)
                      ||+.|+|.....    .+||++++++  ++.++++..    .. ...+.|||||+.|+|...+..+..            
T Consensus        69 Dg~~la~~~~~~~~~~~~l~~~~~~~--g~~~~l~~~----~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~  141 (347)
T 2gop_A           69 DGKKIAFMRANEEKKVSEIWVADLET--LSSKKILEA----KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF  141 (347)
T ss_dssp             TSSEEEEEEEETTTTEEEEEEEETTT--TEEEEEEEE----SE-EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred             CCCEEEEEEeccCCCcceEEEEECCC--CceEEEEcC----CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence            999999987542    3799999987  788888875    23 677899999999999864311000            


Q ss_pred             ------CCceeEEEEEECCCCCccCc-EEeeecCCceeeeEECCCCCEEEEEEecCCCCC--CCCceEEEEEecCCCcee
Q 008927          217 ------LNSTTEIVAIALNGQNIQEP-KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP--WDKAELWVGYISENGDVY  287 (548)
Q Consensus       217 ------~~~~~~l~~idl~~g~~~~~-~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p--~~~~~L~v~~~~~~g~~~  287 (548)
                            .....+||++|+.+++   . +.|+. . ....+.|||||  |+|+.......+  ....+||+++   +|+. 
T Consensus       142 ~g~~~~~~~~~~l~~~d~~~~~---~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d---~~~~-  210 (347)
T 2gop_A          142 DDLGFFDGEKTTFWIFDTESEE---VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE---DGKE-  210 (347)
T ss_dssp             --------CEEEEEEEETTTTE---EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE---TTEE-
T ss_pred             cCcccccCccceEEEEECCCCe---EEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC---CCce-
Confidence                  0124789999999998   6 77776 3 56678999999  777763322211  1145899888   3542 


Q ss_pred             eeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCC----CeeeEEEEeccCCeeEeeccc-ccccCCCcccccCcceee
Q 008927          288 KRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN----GFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEI  361 (548)
Q Consensus       288 ~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~----g~~~Ly~~d~~~g~~~~l~~~-~~d~~~p~w~~~~~~~~~  361 (548)
                        +.+....     .+.  .++|||+ |++.++...    ....||.++  +++.+.++.. +..+..        ...|
T Consensus       211 --~~l~~~~-----~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~--------~~~~  271 (347)
T 2gop_A          211 --EKMFEKV-----SFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQ--------AKIK  271 (347)
T ss_dssp             --EEEEEEE-----SEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEE--------EEEE
T ss_pred             --EEeccCc-----cee--eECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCC--------ccEE
Confidence              2232211     122  3499999 888875421    246899999  6777777642 111111        0233


Q ss_pred             eeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCceeeeee
Q 008927          362 IQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDF  441 (548)
Q Consensus       362 ~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~  441 (548)
                           .++ +++....++..+|| ++  +|+.+.+......+..++... .++++.++...|.+||.+|   ++.     
T Consensus       272 -----sdg-~~~~~~~~~~~~l~-~~--~g~~~~~~~~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~---g~~-----  333 (347)
T 2gop_A          272 -----DGK-VYFTLFEEGSVNLY-IW--DGEIKPIAKGRHWIMGFDVDE-IVVYLKETATRLRELFTWD---GEE-----  333 (347)
T ss_dssp             -----TTE-EEEEEEETTEEEEE-EE--SSSEEEEECSSSEEEEEEESS-SEEEEEECSSSCCEEEEES---SSE-----
T ss_pred             -----cCc-EEEEEecCCcEEEE-Ec--CCceEEEecCCCeEEeeeeeC-cEEEEEcCCCChHHheEeC---CcE-----
Confidence                 223 88888888999999 98  466666654444455554333 6888888888888999997   443     


Q ss_pred             EEEecCCCCC
Q 008927          442 KVVWSSSPDT  451 (548)
Q Consensus       442 ~~~l~~~~~~  451 (548)
                       +.|+..+..
T Consensus       334 -~~lt~~n~~  342 (347)
T 2gop_A          334 -KQLTDYNDP  342 (347)
T ss_dssp             -EECCCTTST
T ss_pred             -EEeccccHh
Confidence             345565543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.84  E-value=3.6e-20  Score=190.53  Aligned_cols=324  Identities=12%  Similarity=0.075  Sum_probs=210.2

Q ss_pred             ccccCCCCCCCcCCHHHHhcCCC--------ccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCC
Q 008927           67 KITAPYGSWKSPLTADVVSGASK--------RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYA  137 (548)
Q Consensus        67 ~~~~~~g~w~spit~~~l~~~~~--------~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~  137 (548)
                      ..+.+|++|..+.+-+.+.....        .+.++++|| |++|+|+...   .|...||.++..+ ++.++++.....
T Consensus         6 ~~~~~~~~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~---~g~~~l~~~d~~~-~~~~~l~~~~~~   81 (396)
T 3c5m_A            6 VITLNFETFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF---DGNRNYYLLNLET-QQAVQLTEGKGD   81 (396)
T ss_dssp             EEECCEEEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT---TSSCEEEEEETTT-TEEEECCCSSCB
T ss_pred             ccchhhheeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEec---CCCceEEEEECCC-CcEEEeecCCCC
Confidence            45678889988877655433321        167899999 9999999754   4667788877653 467777754311


Q ss_pred             ccccceeeCCeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecc-------------------eee
Q 008927          138 VRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYAD-------------------GIF  198 (548)
Q Consensus       138 ~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~-------------------~~~  198 (548)
                            ......|+|||+.|+|.... .+||++++++  ++.++++....   ....+                   ..|
T Consensus        82 ------~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~--~~~~~~~~~~~---~~~~~g~~l~~~~~~~~~~~~~~~~~~  149 (396)
T 3c5m_A           82 ------NTFGGFISTDERAFFYVKNE-LNLMKVDLET--LEEQVIYTVDE---EWKGYGTWVANSDCTKLVGIEILKRDW  149 (396)
T ss_dssp             ------CTTTCEECTTSSEEEEEETT-TEEEEEETTT--CCEEEEEECCT---TEEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred             ------ccccceECCCCCEEEEEEcC-CcEEEEECCC--CCcEEEEeccc---ccCCCCCEEEeccCCcccccccccccc
Confidence                  11235789999999999854 4899999987  77787776421   10111                   345


Q ss_pred             CCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECC-CCCEEEEEEecCCCCCCCCceEEE
Q 008927          199 DPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWV  277 (548)
Q Consensus       199 SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SP-DGk~La~~~~~~~~~p~~~~~L~v  277 (548)
                      +|||+.+++......    .....|+++|+++++   .+.+......+..+.||| ||++|+|+.. .+.. ....+||+
T Consensus       150 spdg~~~~~~~~~~~----~~~~~l~~~d~~~g~---~~~~~~~~~~~~~~~~sp~dg~~l~~~~~-~~~~-~~~~~l~~  220 (396)
T 3c5m_A          150 QPLTSWEKFAEFYHT----NPTCRLIKVDIETGE---LEVIHQDTAWLGHPIYRPFDDSTVGFCHE-GPHD-LVDARMWL  220 (396)
T ss_dssp             CCCCSHHHHHHHHHT----CCCEEEEEEETTTCC---EEEEEEESSCEEEEEEETTEEEEEEEEEC-SCSS-SCSCCCEE
T ss_pred             CCCCcceeeeeeccC----CCcceEEEEECCCCc---EEeeccCCcccccceECCCCCCEEEEEec-CCCC-CCCceEEE
Confidence            666665544310000    134689999999998   777776666678899999 8999999873 2110 01258999


Q ss_pred             EEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeee--EEEEeccCCeeEeecccccccCCCcccc
Q 008927          278 GYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWN--LHKWIESNNEVLAIYSLDAEFSRPLWVF  354 (548)
Q Consensus       278 ~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~--Ly~~d~~~g~~~~l~~~~~d~~~p~w~~  354 (548)
                      +++++ ++   .+.+......  ..+..+.|+|||+ |++.+.. .+...  ||++|+++++.+.+....      .+. 
T Consensus       221 ~d~~~-~~---~~~l~~~~~~--~~~~~~~~spdg~~l~~~~~~-~~~~~~~l~~~d~~~g~~~~l~~~~------~~~-  286 (396)
T 3c5m_A          221 VNEDG-SN---VRKIKEHAEG--ESCTHEFWIPDGSAMAYVSYF-KGQTDRVIYKANPETLENEEVMVMP------PCS-  286 (396)
T ss_dssp             EETTS-CC---CEESSCCCTT--EEEEEEEECTTSSCEEEEEEE-TTTCCEEEEEECTTTCCEEEEEECC------SEE-
T ss_pred             EECCC-Cc---eeEeeccCCC--ccccceEECCCCCEEEEEecC-CCCccceEEEEECCCCCeEEeeeCC------CCC-
Confidence            99873 43   2333332101  3466789999999 8888765 44444  999999988877775321      111 


Q ss_pred             cCcceeeeeecCCCCEEEEEEE-------------eCCeEEEEEEECCCCceEeecCCCc------------ee-Eeeee
Q 008927          355 GINSYEIIQSHGEKNLIACSYR-------------QNGRSYLGILDDFGHSLSLLDIPFT------------DI-DNITL  408 (548)
Q Consensus       355 ~~~~~~~~~~~~d~~~l~~~~~-------------~~g~~~L~~~dl~~g~~~~l~~~~~------------~~-~~~s~  408 (548)
                          ..|+|  .|++.|++...             .++...|+++|+++++.+.|+....            .. ..+++
T Consensus       287 ----~~~s~--~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~  360 (396)
T 3c5m_A          287 ----HLMSN--FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTP  360 (396)
T ss_dssp             ----EEEEC--SSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECT
T ss_pred             ----CCccC--CCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEcc
Confidence                22331  04555544321             1355789999999998777764322            11 12478


Q ss_pred             cCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          409 GNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       409 d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      |++.|+|.... .....||++++++++.
T Consensus       361 dg~~l~~~s~~-~~~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          361 NDDGVLFTSDF-EGVPAIYIADVPESYK  387 (396)
T ss_dssp             TSSEEEEEECT-TSSCEEEEEECCTTCC
T ss_pred             CCCeEEEEecC-CCCceEEEEEEccccc
Confidence            89988887754 3467899999887763

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.82  E-value=3.3e-18  Score=178.73  Aligned_cols=240  Identities=13%  Similarity=0.138  Sum_probs=176.9

Q ss_pred             CCEEEEEeCC--C---CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          154 GDTVIFSNYK--D---QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       154 ~~~i~F~~~~--~---~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +.+|+|....  +   +.|++.++++  +..+.|+...    ..+..+.|||||+.|++++.+..      ...|+++|+
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g--~~~~~l~~~~----~~v~~~~~Spdg~~la~~s~~~~------~~~i~~~d~  210 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDG--YNQFVVHRSP----QPLMSPAWSPDGSKLAYVTFESG------RSALVIQTL  210 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTS--CSCEEEEEES----SCEEEEEECTTSSEEEEEECTTS------SCEEEEEET
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCC--CCCEEEeCCC----CcceeeEEcCCCCEEEEEEecCC------CcEEEEEEC
Confidence            6688888753  2   6899999987  7778887542    34667899999999999865431      358999999


Q ss_pred             CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      ++++   .+.+.........++|||||++|+|.....     ...+||++|++. ++   ...+....    ..+..+.|
T Consensus       211 ~tg~---~~~l~~~~~~~~~~~~spdg~~la~~~~~~-----g~~~i~~~d~~~-~~---~~~l~~~~----~~~~~~~~  274 (415)
T 2hqs_A          211 ANGA---VRQVASFPRHNGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLAS-GQ---IRQVTDGR----SNNTEPTW  274 (415)
T ss_dssp             TTCC---EEEEECCSSCEEEEEECTTSSEEEEEECTT-----SSCEEEEEETTT-CC---EEECCCCS----SCEEEEEE
T ss_pred             CCCc---EEEeecCCCcccCEEEcCCCCEEEEEEecC-----CCceEEEEECCC-CC---EEeCcCCC----CcccceEE
Confidence            9998   777776666678899999999999876322     245799999984 54   34454433    45678999


Q ss_pred             CcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927          309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (548)
Q Consensus       309 spDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d  387 (548)
                      +|||+ |++.+++ .+..+||++|+.+++.+.++....      +.   ....|+|   +++.|++....++...|+++|
T Consensus       275 spdg~~l~~~s~~-~g~~~i~~~d~~~~~~~~l~~~~~------~~---~~~~~sp---dG~~l~~~~~~~g~~~i~~~d  341 (415)
T 2hqs_A          275 FPDSQNLAFTSDQ-AGRPQVYKVNINGGAPQRITWEGS------QN---QDADVSS---DGKFMVMVSSNGGQQHIAKQD  341 (415)
T ss_dssp             CTTSSEEEEEECT-TSSCEEEEEETTSSCCEECCCSSS------EE---EEEEECT---TSSEEEEEEECSSCEEEEEEE
T ss_pred             CCCCCEEEEEECC-CCCcEEEEEECCCCCEEEEecCCC------cc---cCeEECC---CCCEEEEEECcCCceEEEEEE
Confidence            99999 8888876 677899999998888776653211      11   1234554   888898887777788999999


Q ss_pred             CCCCceEeecCCCceeE--eeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          388 DFGHSLSLLDIPFTDID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       388 l~~g~~~~l~~~~~~~~--~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      +++++.+.|.... .+.  .++++++.|++.... .....||++|++++..
T Consensus       342 ~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~-~~~~~l~~~d~~g~~~  390 (415)
T 2hqs_A          342 LATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQ-GMGSVLNLVSTDGRFK  390 (415)
T ss_dssp             TTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEE-TTEEEEEEEETTSCCE
T ss_pred             CCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcC-CCccEEEEEECCCCcE
Confidence            9999888776543 332  237888888776653 3345899999976653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.82  E-value=5.2e-18  Score=177.18  Aligned_cols=256  Identities=11%  Similarity=0.087  Sum_probs=181.7

Q ss_pred             CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC--CeEEEEeCCCCC
Q 008927           99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD  176 (548)
Q Consensus        99 g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~--~~Ly~~~~~~~~  176 (548)
                      +++++|+.....++....|+.++.++ +..+.|+.....+       ...+|+|+|+.|+|....+  ..||+.++.+  
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v-------~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t--  212 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPL-------MSPAWSPDGSKLAYVTFESGRSALVIQTLAN--  212 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCE-------EEEEECTTSSEEEEEECTTSSCEEEEEETTT--
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcc-------eeeEEcCCCCEEEEEEecCCCcEEEEEECCC--
Confidence            78899987543222125676666553 4566666432122       1247899999999998543  5899999987  


Q ss_pred             CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCC
Q 008927          177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE  256 (548)
Q Consensus       177 ~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk  256 (548)
                      ++.+.++...    .....+.|||||+.|+|+....      ....||++|+.+++   .+.++........+.|||||+
T Consensus       213 g~~~~l~~~~----~~~~~~~~spdg~~la~~~~~~------g~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~spdg~  279 (415)
T 2hqs_A          213 GAVRQVASFP----RHNGAPAFSPDGSKLAFALSKT------GSLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFPDSQ  279 (415)
T ss_dssp             CCEEEEECCS----SCEEEEEECTTSSEEEEEECTT------SSCEEEEEETTTCC---EEECCCCSSCEEEEEECTTSS
T ss_pred             CcEEEeecCC----CcccCEEEcCCCCEEEEEEecC------CCceEEEEECCCCC---EEeCcCCCCcccceEECCCCC
Confidence            7777777642    3456789999999999875432      13579999999998   778876666677899999999


Q ss_pred             EEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCC
Q 008927          257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN  335 (548)
Q Consensus       257 ~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g  335 (548)
                      +|++.+.+.     ...+||++++++ ++   .+.+....    ..+..+.|+|||+ |++.+.. .+...|+++|++++
T Consensus       280 ~l~~~s~~~-----g~~~i~~~d~~~-~~---~~~l~~~~----~~~~~~~~spdG~~l~~~~~~-~g~~~i~~~d~~~~  345 (415)
T 2hqs_A          280 NLAFTSDQA-----GRPQVYKVNING-GA---PQRITWEG----SQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATG  345 (415)
T ss_dssp             EEEEEECTT-----SSCEEEEEETTS-SC---CEECCCSS----SEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTC
T ss_pred             EEEEEECCC-----CCcEEEEEECCC-CC---EEEEecCC----CcccCeEECCCCCEEEEEECc-CCceEEEEEECCCC
Confidence            999887322     135899999874 54   23343322    3456789999999 7777655 56788999999998


Q ss_pred             eeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCceeE
Q 008927          336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDID  404 (548)
Q Consensus       336 ~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~  404 (548)
                      +.+.++... ..         ....|.|   +++.|++....++...|+++|++++..+.|+...+.+.
T Consensus       346 ~~~~l~~~~-~~---------~~~~~sp---dg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~  401 (415)
T 2hqs_A          346 GVQVLSSTF-LD---------ETPSLAP---NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVK  401 (415)
T ss_dssp             CEEECCCSS-SC---------EEEEECT---TSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEE
T ss_pred             CEEEecCCC-Cc---------CCeEEcC---CCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCc
Confidence            887775321 11         1234554   88889888888888899999999888888876544443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.81  E-value=1.2e-17  Score=186.24  Aligned_cols=323  Identities=10%  Similarity=0.011  Sum_probs=204.4

Q ss_pred             CCCcCCHHHHhcCC--CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeE
Q 008927           75 WKSPLTADVVSGAS--KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFR  151 (548)
Q Consensus        75 w~spit~~~l~~~~--~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~  151 (548)
                      |..++|.++++...  .....+.|+| |+.+ +. .   .+|  .|+.++..+ ++.+.++...-.....+   ...+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~-~~-~---~dg--~i~~~d~~~-g~~~~~~~~~~~~~~~v---~~~~~S   69 (723)
T 1xfd_A            1 QKKKVTVEDLFSEDFKIHDPEAKWISDTEFI-YR-E---QKG--TVRLWNVET-NTSTVLIEGKKIESLRA---IRYEIS   69 (723)
T ss_dssp             CCCCCCHHHHTCTTTCCCCCCCCBSSSSCBC-CC-C---SSS--CEEEBCGGG-CCCEEEECTTTTTTTTC---SEEEEC
T ss_pred             CCccccHHHHhCCCCcccccccEEcCCCcEE-EE-e---CCC--CEEEEECCC-CcEEEEecccccccccc---ceEEEC
Confidence            45789999998752  3366889999 6633 32 1   245  455555443 35555553211000011   224789


Q ss_pred             EECCEEEEEeCC--------CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 008927          152 IFGDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (548)
Q Consensus       152 ~~~~~i~F~~~~--------~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l  223 (548)
                      |||+.|+|....        ++.||+.++++  ++.++|+.... .......+.|||||++|+|++.          .+|
T Consensus        70 pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~-~~~~~~~~~~SPdG~~la~~~~----------~~i  136 (723)
T 1xfd_A           70 PDREYALFSYNVEPIYQHSYTGYYVLSKIPH--GDPQSLDPPEV-SNAKLQYAGWGPKGQQLIFIFE----------NNI  136 (723)
T ss_dssp             TTSSEEEEEESCCCCSSSCCCSEEEEEESSS--CCCEECCCTTC-CSCCCSBCCBCSSTTCEEEEET----------TEE
T ss_pred             CCCCEEEEEecCccceeecceeeEEEEECCC--CceEeccCCcc-ccccccccEECCCCCEEEEEEC----------CeE
Confidence            999999998643        26899999987  77788876421 1123567889999999999853          269


Q ss_pred             EEEECCCCCccCcEEeeecC-Cc------------------eeeeEECCCCCEEEEEEecCCCC----------------
Q 008927          224 VAIALNGQNIQEPKVLVSGS-DF------------------YAFPRMDPRGERMAWIEWHHPNM----------------  268 (548)
Q Consensus       224 ~~idl~~g~~~~~~~L~~~~-~~------------------~~~p~~SPDGk~La~~~~~~~~~----------------  268 (548)
                      |++|+++++   .++++... ..                  +..+.|||||++|+|.+.+....                
T Consensus       137 ~~~~~~~g~---~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~  213 (723)
T 1xfd_A          137 YYCAHVGKQ---AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTV  213 (723)
T ss_dssp             EEESSSSSC---CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred             EEEECCCCc---eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcc
Confidence            999999998   77776542 11                  15689999999999987553211                


Q ss_pred             ----------CCCCceEEEEEecCCCceeeeEEEcCCCC--CcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCC
Q 008927          269 ----------PWDKAELWVGYISENGDVYKRVCVAGFDP--TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN  335 (548)
Q Consensus       269 ----------p~~~~~L~v~~~~~~g~~~~~~~l~~~~~--~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g  335 (548)
                                .-....|++.|+++ ++.  .+.+.....  .....+..+.|||||+ |++.+++..+...|+++|++++
T Consensus       214 ~~~~~~~~G~~~~~~~l~~~d~~~-~~~--~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g  290 (723)
T 1xfd_A          214 KPYHYPKAGSENPSISLHVIGLNG-PTH--DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG  290 (723)
T ss_dssp             EEEECCBTTSCCCEEEEEEEESSS-SCC--CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred             eeccCCCCCCCCCeeEEEEEECCC-Cce--eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC
Confidence                      00123789999874 431  233332110  0003456789999999 6566666456678999999999


Q ss_pred             eeEeecccccccCCCccccc-CcceeeeeecCCCCEEEEE-EEeCC----eEEEEEEE-CCCCc---eEeecCC-CceeE
Q 008927          336 EVLAIYSLDAEFSRPLWVFG-INSYEIIQSHGEKNLIACS-YRQNG----RSYLGILD-DFGHS---LSLLDIP-FTDID  404 (548)
Q Consensus       336 ~~~~l~~~~~d~~~p~w~~~-~~~~~~~~~~~d~~~l~~~-~~~~g----~~~L~~~d-l~~g~---~~~l~~~-~~~~~  404 (548)
                      +.+.+.....    ..|+.. .....|+|   |++.|++. ...++    ..+|+++| ..+++   .+.|+.+ .....
T Consensus       291 ~~~~~~~~~~----~~~~~~~~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~  363 (723)
T 1xfd_A          291 VCTKKHEDES----EAWLHRQNEEPVFSK---DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK  363 (723)
T ss_dssp             CEEEEEEEEC----SSCCCCCCCCCEECT---TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE
T ss_pred             cceEEEEecc----CCEEeccCCCceEcC---CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEe
Confidence            8776653211    122110 01245655   88888887 55666    78999999 57777   6777753 32222


Q ss_pred             --eeeecCCEEEEEEecC-CCCCeEEEEEcCCC
Q 008927          405 --NITLGNDCLFVEGASG-VEPSSVAKVTLDDH  434 (548)
Q Consensus       405 --~~s~d~~~l~~~~ss~-~~p~~l~~~d~~~~  434 (548)
                        .+++|++.|+|..... .....||.+++.++
T Consensus       364 ~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~  396 (723)
T 1xfd_A          364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN  396 (723)
T ss_dssp             EEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred             eeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence              3588999998877542 13457888876554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.80  E-value=8.3e-18  Score=172.71  Aligned_cols=287  Identities=9%  Similarity=0.054  Sum_probs=184.0

Q ss_pred             eEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCC--eEEEEeCCCCCCCceecCCCCCCCCce
Q 008927          115 GVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVS  192 (548)
Q Consensus       115 ~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~--~Ly~~~~~~~~~~~~~lT~~~~~~~~~  192 (548)
                      ..+|.....+ +..++||..+......  -+...+|+|||++|+|....++  +||++++++  ++.+++|...   ...
T Consensus        11 ~~~~~~~~~g-~~~~~lt~~~~~~~~~--~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~--g~~~~lt~~~---~~~   82 (388)
T 3pe7_A           11 FDTYQDASTG-AQVTRLTPPDVTCHRN--YFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNT--QVATQLTEGR---GDN   82 (388)
T ss_dssp             CEEEECTTTC-CEEEECSCTTSCEECC--CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTT--CEEEECCCSS---CBC
T ss_pred             ceEEecCCCC-cceEEecCCcccccch--hhcCccCCCCCCEEEEEEcCCCCceEEEEeCCC--CceEEeeeCC---CCC
Confidence            3455544432 4667777543221110  1123579999999999987554  799999998  8899998763   122


Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCc-ee--eeEECCCCCEEEEEEecCCC-C
Q 008927          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF-YA--FPRMDPRGERMAWIEWHHPN-M  268 (548)
Q Consensus       193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~-~~--~p~~SPDGk~La~~~~~~~~-~  268 (548)
                      ...+.|||||++|+|+..+         ..|+++|+++++   .+.+...+.. ..  ...++|||+.|+.+.....+ .
T Consensus        83 ~~~~~~spdg~~l~~~~~~---------~~l~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~  150 (388)
T 3pe7_A           83 TFGGFLSPDDDALFYVKDG---------RNLMRVDLATLE---ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWV  150 (388)
T ss_dssp             SSSCEECTTSSEEEEEETT---------TEEEEEETTTCC---EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred             ccceEEcCCCCEEEEEeCC---------CeEEEEECCCCc---ceeeeechhhcccccceeECCCCCeeccccccCcccc
Confidence            3357899999999998532         379999999998   7777655433 22  23459999998865422111 0


Q ss_pred             C-------------CCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc-CCc-EEEEEeCC--CCeeeEEEEe
Q 008927          269 P-------------WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGE-LFFVTDRK--NGFWNLHKWI  331 (548)
Q Consensus       269 p-------------~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp-DG~-L~~~sd~~--~g~~~Ly~~d  331 (548)
                      +             -....|+++++++ |+   .+.+....    ..+..+.|+| ||+ |+|.++..  .+..+||.++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~l~~~d~~~-g~---~~~l~~~~----~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d  222 (388)
T 3pe7_A          151 PLTDWKKFHEFYFTKPCCRLMRVDLKT-GE---STVILQEN----QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLIN  222 (388)
T ss_dssp             CCCSHHHHHHHGGGCCCEEEEEEETTT-CC---EEEEEEES----SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEE
T ss_pred             cccccchhhhhhccCCcceEEEEECCC-Cc---eEEeecCC----ccccccEECCCCCCEEEEEEecCCCCCcceEEEEe
Confidence            0             0136899999984 54   23333322    3467899999 999 88887641  1256899999


Q ss_pred             ccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeE--EEEEEECCCCceEeecC-CCc-e----e
Q 008927          332 ESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS--YLGILDDFGHSLSLLDI-PFT-D----I  403 (548)
Q Consensus       332 ~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~--~L~~~dl~~g~~~~l~~-~~~-~----~  403 (548)
                      +++++.+.|+....    ..+.   ....|+|   |++.|++.....+..  .|+++|+++|+.+.|+. +.. .    .
T Consensus       223 ~~~~~~~~l~~~~~----~~~~---~~~~~sp---dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~  292 (388)
T 3pe7_A          223 EDGTNMRKVKTHAE----GESC---THEFWVP---DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNY  292 (388)
T ss_dssp             TTSCCCEESCCCCT----TEEE---EEEEECT---TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECT
T ss_pred             CCCCceEEeeeCCC----Cccc---ccceECC---CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecC
Confidence            98888877764211    0111   1134554   888898887776654  49999999998877653 221 0    1


Q ss_pred             --EeeeecCCEEEEEEec-----CCCCCeEEEEEcCCCceeee
Q 008927          404 --DNITLGNDCLFVEGAS-----GVEPSSVAKVTLDDHKLKAV  439 (548)
Q Consensus       404 --~~~s~d~~~l~~~~ss-----~~~p~~l~~~d~~~~~~~~~  439 (548)
                        ..+++|++.|++....     ......||++|+++++.+++
T Consensus       293 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l  335 (388)
T 3pe7_A          293 DGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRV  335 (388)
T ss_dssp             TSSEEEEEECCC------------CCCCEEEEEETTTTEEEEE
T ss_pred             CCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEe
Confidence              1247899988876543     14567899999988875433

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.79  E-value=7.1e-18  Score=188.27  Aligned_cols=315  Identities=11%  Similarity=0.028  Sum_probs=198.3

Q ss_pred             CcCCHHHHhcCC--CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEE
Q 008927           77 SPLTADVVSGAS--KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF  153 (548)
Q Consensus        77 spit~~~l~~~~--~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~  153 (548)
                      .++|.|+++...  ..-.+++++| | ++++..    .+|.  |+.++..+ ++.++++...-.....+   ...+|+||
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~~~----~d~~--i~~~~~~~-g~~~~~~~~~~~~~~~~---~~~~~SpD   70 (719)
T 1z68_A            2 RALTLKDILNGTFSYKTFFPNWISGQ-EYLHQS----ADNN--IVLYNIET-GQSYTILSNRTMKSVNA---SNYGLSPD   70 (719)
T ss_dssp             BCCCHHHHHHTTTCCCCCCCEESSSS-EEEEEC----TTSC--EEEEESSS-CCEEEEECHHHHHTTTC---SEEEECTT
T ss_pred             CcccHHHHhcCcccCCCCccEECCCC-eEEEEc----CCCC--EEEEEcCC-CcEEEEEccccccccce---eeEEECCC
Confidence            478999998752  2223689999 6 544433    1354  54444443 46677764310000001   12478999


Q ss_pred             CCEEEEEeCC--------CCeEEEEeCCCCCCCc---eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 008927          154 GDTVIFSNYK--------DQRLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE  222 (548)
Q Consensus       154 ~~~i~F~~~~--------~~~Ly~~~~~~~~~~~---~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~  222 (548)
                      |+.|+|....        ++.||+.++++  ++.   ++|+.       ....+.|||||++|+|+. +         .+
T Consensus        71 g~~la~~~~~~~~~~~s~~~~i~~~d~~~--g~~~~~~~l~~-------~~~~~~~SPDG~~la~~~-~---------~~  131 (719)
T 1z68_A           71 RQFVYLESDYSKLWRYSYTATYYIYDLSN--GEFVRGNELPR-------PIQYLCWSPVGSKLAYVY-Q---------NN  131 (719)
T ss_dssp             SSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSSCCCS-------SBCCEEECSSTTCEEEEE-T---------TE
T ss_pred             CCeEEEEecCceeEEeecceEEEEEECCC--CccccceecCc-------ccccceECCCCCEEEEEE-C---------Ce
Confidence            9999998752        46899999987  665   55542       256789999999999984 2         37


Q ss_pred             EEEEECCCCCccCcEEeeecCC-------------------ceeeeEECCCCCEEEEEEecCCCCC--------------
Q 008927          223 IVAIALNGQNIQEPKVLVSGSD-------------------FYAFPRMDPRGERMAWIEWHHPNMP--------------  269 (548)
Q Consensus       223 l~~idl~~g~~~~~~~L~~~~~-------------------~~~~p~~SPDGk~La~~~~~~~~~p--------------  269 (548)
                      |+++|+.+++   .++|+....                   ....++|||||++|+|.+.+....+              
T Consensus       132 i~~~~~~~g~---~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~  208 (719)
T 1z68_A          132 IYLKQRPGDP---PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPR  208 (719)
T ss_dssp             EEEESSTTSC---CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCE
T ss_pred             EEEEeCCCCC---cEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcc
Confidence            9999999998   677753221                   1147899999999999876532110              


Q ss_pred             ------------CCCceEEEEEecCCCceeeeEEE------cCCCCCcccCCcCceECcCCcEEEE-EeCCCCeeeEEEE
Q 008927          270 ------------WDKAELWVGYISENGDVYKRVCV------AGFDPTIVESPTEPKWSSKGELFFV-TDRKNGFWNLHKW  330 (548)
Q Consensus       270 ------------~~~~~L~v~~~~~~g~~~~~~~l------~~~~~~~~~~~~~~~wspDG~L~~~-sd~~~g~~~Ly~~  330 (548)
                                  .....|++.++++ ++......+      .+..    ..+..+.|||||++++. .++..+...|+++
T Consensus       209 ~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~  283 (719)
T 1z68_A          209 TINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIASSD----YYFSWLTWVTDERVCLQWLKRVQNVSVLSIC  283 (719)
T ss_dssp             EEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHHTSC----EEEEEEEESSSSEEEEEEEESSTTEEEEEEE
T ss_pred             ceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCCCCc----ceEEEeEEeCCCeEEEEEeccccCeEEEEEE
Confidence                        1123788999874 431000112      1222    45678999999885554 4554566789999


Q ss_pred             e----ccCCeeEeecccccccCCCccccc--CcceeeeeecCCCCEEEEE-EEeCCeEEEEEEECCCCceEeecCCCcee
Q 008927          331 I----ESNNEVLAIYSLDAEFSRPLWVFG--INSYEIIQSHGEKNLIACS-YRQNGRSYLGILDDFGHSLSLLDIPFTDI  403 (548)
Q Consensus       331 d----~~~g~~~~l~~~~~d~~~p~w~~~--~~~~~~~~~~~d~~~l~~~-~~~~g~~~L~~~dl~~g~~~~l~~~~~~~  403 (548)
                      |    +++++.+.++.... .....|+..  .....|+|   |++.|++. ...++..+|+++|+++++.++|+.+...+
T Consensus       284 d~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~sp---dg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v  359 (719)
T 1z68_A          284 DFREDWQTWDCPKTQEHIE-ESRTGWAGGFFVSTPVFSY---DAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEA  359 (719)
T ss_dssp             EECSSSSSEECCGGGEEEE-ECSSSCSSSSSCCCCEECT---TSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCE
T ss_pred             cccCCCCCCceEEEEeccc-ccCCceEccccCCccEECC---CCCeEEEEEEccCCceEEEEEECCCCceEecccCceEE
Confidence            9    88887766652000 011122210  01234554   78877775 44678899999999998888887643333


Q ss_pred             Eee--eecCCEEEEEEec---CCCCCeEEEEEcCCC
Q 008927          404 DNI--TLGNDCLFVEGAS---GVEPSSVAKVTLDDH  434 (548)
Q Consensus       404 ~~~--s~d~~~l~~~~ss---~~~p~~l~~~d~~~~  434 (548)
                      ..+  . +++.|+|.+..   ......||.++++++
T Consensus       360 ~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g  394 (719)
T 1z68_A          360 INIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSY  394 (719)
T ss_dssp             EEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred             EEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence            322  5 88888888754   134568999988655

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.74  E-value=1.3e-16  Score=163.87  Aligned_cols=253  Identities=11%  Similarity=0.088  Sum_probs=164.4

Q ss_pred             CeeeEEECCEEEEEeCCC--CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 008927          147 GGAFRIFGDTVIFSNYKD--QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (548)
Q Consensus       147 g~~~~~~~~~i~F~~~~~--~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~  224 (548)
                      ..+|+|||+.|+|....+  .+||++++++  ++.++++...   ......+.|||||+.|+|++.+         .+||
T Consensus        40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~--~~~~~l~~~~---~~~~~~~~~spdg~~l~~~~~~---------~~l~  105 (396)
T 3c5m_A           40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLET--QQAVQLTEGK---GDNTFGGFISTDERAFFYVKNE---------LNLM  105 (396)
T ss_dssp             SCCBCTTSCEEEEEECTTSSCEEEEEETTT--TEEEECCCSS---CBCTTTCEECTTSSEEEEEETT---------TEEE
T ss_pred             cCcCCCCCCEEEEEEecCCCceEEEEECCC--CcEEEeecCC---CCccccceECCCCCEEEEEEcC---------CcEE
Confidence            457999999999997653  4899999987  7788888752   1112337899999999998533         2699


Q ss_pred             EEECCCCCccCcEEeeecCCc-eee-------------------eEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCC
Q 008927          225 AIALNGQNIQEPKVLVSGSDF-YAF-------------------PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG  284 (548)
Q Consensus       225 ~idl~~g~~~~~~~L~~~~~~-~~~-------------------p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g  284 (548)
                      ++|+++++   .+++...... ...                   +.|||||++|++.......   ....||+++++. |
T Consensus       106 ~~d~~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~---~~~~l~~~d~~~-g  178 (396)
T 3c5m_A          106 KVDLETLE---EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN---PTCRLIKVDIET-G  178 (396)
T ss_dssp             EEETTTCC---EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC---CCEEEEEEETTT-C
T ss_pred             EEECCCCC---cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC---CcceEEEEECCC-C
Confidence            99999998   7777764322 111                   3466666666544310001   246899999984 5


Q ss_pred             ceeeeEEEcCCCCCcccCCcCceECc-CCc-EEEEEeCCCC--eeeEEEEeccCCeeEeecccccccCCCcccccCccee
Q 008927          285 DVYKRVCVAGFDPTIVESPTEPKWSS-KGE-LFFVTDRKNG--FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYE  360 (548)
Q Consensus       285 ~~~~~~~l~~~~~~~~~~~~~~~wsp-DG~-L~~~sd~~~g--~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~  360 (548)
                      +.   +.+....    ..+..+.|+| ||+ |+|+++....  ...||.+++++++.+.++...     +.+.  .....
T Consensus       179 ~~---~~~~~~~----~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-----~~~~--~~~~~  244 (396)
T 3c5m_A          179 EL---EVIHQDT----AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHA-----EGES--CTHEF  244 (396)
T ss_dssp             CE---EEEEEES----SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCC-----TTEE--EEEEE
T ss_pred             cE---EeeccCC----cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccC-----CCcc--ccceE
Confidence            42   2333322    3467889999 888 8888753111  157999999888777776311     1111  11234


Q ss_pred             eeeecCCCCEEEEEEEeCCeEE--EEEEECCCCceEeecC-CCceeEeeee-cCCEEEEEEec------------CCCCC
Q 008927          361 IIQSHGEKNLIACSYRQNGRSY--LGILDDFGHSLSLLDI-PFTDIDNITL-GNDCLFVEGAS------------GVEPS  424 (548)
Q Consensus       361 ~~~~~~d~~~l~~~~~~~g~~~--L~~~dl~~g~~~~l~~-~~~~~~~~s~-d~~~l~~~~ss------------~~~p~  424 (548)
                      |+|   |++.|++....++...  |+++|+++++.+.+.. +... ..+++ |++.+++..+.            .....
T Consensus       245 ~sp---dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~  320 (396)
T 3c5m_A          245 WIP---DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP  320 (396)
T ss_dssp             ECT---TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred             ECC---CCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence            554   7888888877766544  9999999998877653 3222 23467 88865553321            11237


Q ss_pred             eEEEEEcCCCceee
Q 008927          425 SVAKVTLDDHKLKA  438 (548)
Q Consensus       425 ~l~~~d~~~~~~~~  438 (548)
                      .||++|+++++.++
T Consensus       321 ~i~~~d~~~~~~~~  334 (396)
T 3c5m_A          321 FLYVLNTKAKSAQK  334 (396)
T ss_dssp             EEEEEETTTTBCCE
T ss_pred             cEEEEecccCceEE
Confidence            89999998887543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.70  E-value=1.6e-15  Score=169.69  Aligned_cols=257  Identities=18%  Similarity=0.199  Sum_probs=168.0

Q ss_pred             eeeEEECCEEEEEeCCCC-----eEEEEeCCCCCCCceecCCCCCCCC---------------------ceecceeeCCC
Q 008927          148 GAFRIFGDTVIFSNYKDQ-----RLYKHSIDSKDSSPLPITPDYGEPL---------------------VSYADGIFDPR  201 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~~~-----~Ly~~~~~~~~~~~~~lT~~~~~~~---------------------~~~~~~~~SpD  201 (548)
                      .+|+|||+.|+|....++     .||++++++  ++.++++.......                     ..+..+.||||
T Consensus        42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpD  119 (741)
T 2ecf_A           42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS--GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPD  119 (741)
T ss_dssp             EEECTTSSEEEEEECCSSCTTEEEEEEEETTT--CCEEEEECGGGTC--------------------CCEESCCCEECTT
T ss_pred             ceEecCCCEEEEEeccCCCCcccEEEEEECCC--CceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCC
Confidence            478899999999987555     899999987  77777665311000                     12567899999


Q ss_pred             CCEEEEEEeccCCCCCCceeEEEEEECCCC---CccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEE
Q 008927          202 FNRYVTVREDRRQDALNSTTEIVAIALNGQ---NIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG  278 (548)
Q Consensus       202 G~~i~~v~~~~~~~~~~~~~~l~~idl~~g---~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~  278 (548)
                      |+.|++...          ..|+++|+.++   +   .+.++........+.|||||++|+|..         ..+||+.
T Consensus       120 g~~l~~~~~----------~~i~~~d~~~~~~~~---~~~l~~~~~~~~~~~~SPDG~~la~~~---------~~~i~~~  177 (741)
T 2ecf_A          120 AQRLLFPLG----------GELYLYDLKQEGKAA---VRQLTHGEGFATDAKLSPKGGFVSFIR---------GRNLWVI  177 (741)
T ss_dssp             SSEEEEEET----------TEEEEEESSSCSTTS---CCBCCCSSSCEEEEEECTTSSEEEEEE---------TTEEEEE
T ss_pred             CCEEEEEeC----------CcEEEEECCCCCcce---EEEcccCCcccccccCCCCCCEEEEEe---------CCcEEEE
Confidence            999999743          47999999998   7   677776656678899999999999986         1379999


Q ss_pred             EecCCCceeeeEEEcCCCCC-c------------ccCCcCceECcCCc-EEEEEeCCC----------------------
Q 008927          279 YISENGDVYKRVCVAGFDPT-I------------VESPTEPKWSSKGE-LFFVTDRKN----------------------  322 (548)
Q Consensus       279 ~~~~~g~~~~~~~l~~~~~~-~------------~~~~~~~~wspDG~-L~~~sd~~~----------------------  322 (548)
                      ++++ ++   .+.++..... .            ...+..+.|||||+ |++.+....                      
T Consensus       178 d~~~-g~---~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~  253 (741)
T 2ecf_A          178 DLAS-GR---QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY  253 (741)
T ss_dssp             ETTT-TE---EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred             ecCC-CC---EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence            9984 54   2333322100 0            00146789999999 888753211                      


Q ss_pred             -------CeeeEEEEeccC-CeeEeeccc---ccccC-----------------------------------------CC
Q 008927          323 -------GFWNLHKWIESN-NEVLAIYSL---DAEFS-----------------------------------------RP  350 (548)
Q Consensus       323 -------g~~~Ly~~d~~~-g~~~~l~~~---~~d~~-----------------------------------------~p  350 (548)
                             +...|+++|+++ ++.+.+...   ...+.                                         ..
T Consensus       254 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~  333 (741)
T 2ecf_A          254 PAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP  333 (741)
T ss_dssp             CBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS
T ss_pred             CCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC
Confidence                   234788889887 765444311   00000                                         00


Q ss_pred             cccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCceeE---eeeecCCEEEEEEecCC-CCCeE
Q 008927          351 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDID---NITLGNDCLFVEGASGV-EPSSV  426 (548)
Q Consensus       351 ~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~---~~s~d~~~l~~~~ss~~-~p~~l  426 (548)
                      .|........|+|   |++ +++....++..+||.+|++++ .+.|+.....+.   .++++++.|++.++... ....|
T Consensus       334 ~~~~~~~~~~~sp---dg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l  408 (741)
T 2ecf_A          334 TWVPLHNSLRFLD---DGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQI  408 (741)
T ss_dssp             SCCCCCSCCEECT---TSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEE
T ss_pred             CcCCcCCceEECC---CCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEE
Confidence            1111112345654   666 777777778889999998766 777775433332   35789998888776432 14568


Q ss_pred             EEEEcCCCcee
Q 008927          427 AKVTLDDHKLK  437 (548)
Q Consensus       427 ~~~d~~~~~~~  437 (548)
                      |.++.+++..+
T Consensus       409 ~~~~~~g~~~~  419 (741)
T 2ecf_A          409 YAVPLQGGQPQ  419 (741)
T ss_dssp             EEEETTCCCCE
T ss_pred             EEEEcCCCCee
Confidence            88887655443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.70  E-value=2.6e-15  Score=167.08  Aligned_cols=255  Identities=13%  Similarity=0.119  Sum_probs=171.1

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +|++| +.|+|..  ++.||++++.+  ++.++++...    .....+.|||||+.|+|+. +         ..|+++|+
T Consensus        88 ~~spd-~~~~~~~--~~~i~~~d~~~--~~~~~l~~~~----~~~~~~~~SpdG~~la~~~-~---------~~i~v~~~  148 (706)
T 2z3z_A           88 LDAGR-GLVVLFT--QGGLVGFDMLA--RKVTYLFDTN----EETASLDFSPVGDRVAYVR-N---------HNLYIARG  148 (706)
T ss_dssp             EETTT-TEEEEEE--TTEEEEEETTT--TEEEEEECCT----TCCTTCEECTTSSEEEEEE-T---------TEEEEEEC
T ss_pred             EECCC-CeEEEEE--CCEEEEEECCC--CceEEccCCc----ccccCCcCCCCCCEEEEEE-C---------CeEEEEec
Confidence            56677 8899987  47899999987  7777777642    3467789999999999963 2         37999999


Q ss_pred             CC-----CCccCcEEeeecCCc---------------eeeeEECCCCCEEEEEEecCCCC--------------------
Q 008927          229 NG-----QNIQEPKVLVSGSDF---------------YAFPRMDPRGERMAWIEWHHPNM--------------------  268 (548)
Q Consensus       229 ~~-----g~~~~~~~L~~~~~~---------------~~~p~~SPDGk~La~~~~~~~~~--------------------  268 (548)
                      .+     ++   .++++.....               ...+.|||||++|++.+.+....                    
T Consensus       149 ~~~~~~~g~---~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y  225 (706)
T 2z3z_A          149 GKLGEGMSR---AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYY  225 (706)
T ss_dssp             BCTTSCCCC---CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECC
T ss_pred             CcccccCCC---cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeC
Confidence            98     87   6776644322               36789999999999987432210                    


Q ss_pred             -----CCCCceEEEEEecCCCceeeeEEEc-CCCCCcccCCcCceECcCCc-EEEEE-eCCCCeeeEEEEeccCC-eeEe
Q 008927          269 -----PWDKAELWVGYISENGDVYKRVCVA-GFDPTIVESPTEPKWSSKGE-LFFVT-DRKNGFWNLHKWIESNN-EVLA  339 (548)
Q Consensus       269 -----p~~~~~L~v~~~~~~g~~~~~~~l~-~~~~~~~~~~~~~~wspDG~-L~~~s-d~~~g~~~Ly~~d~~~g-~~~~  339 (548)
                           ......|+++|+++ ++   .+.+. .....  ..+..+.|+|||+ |++.+ ++......|+++|++++ +.+.
T Consensus       226 ~~~g~~~~~~~l~~~d~~~-~~---~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~  299 (706)
T 2z3z_A          226 PMAGTPSHHVTVGIYHLAT-GK---TVYLQTGEPKE--KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRT  299 (706)
T ss_dssp             CBTTSCCCEEEEEEEETTT-TE---EEECCCCSCTT--CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEE
T ss_pred             CCCCCCCCeeEEEEEECCC-Cc---eEeeccCCCCc--eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeE
Confidence                 01235799999974 54   22222 11101  3456789999999 77754 44355678999999998 6665


Q ss_pred             ecccccccCCCcccccCcceeeeeecCC--CCEEEEEEEeCCeEEEEEEECCCCceEeecCCCceeE---eeeecCCEEE
Q 008927          340 IYSLDAEFSRPLWVFGINSYEIIQSHGE--KNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDID---NITLGNDCLF  414 (548)
Q Consensus       340 l~~~~~d~~~p~w~~~~~~~~~~~~~~d--~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~---~~s~d~~~l~  414 (548)
                      +....    ...|........|+    .  ++.+++....++..+||.++.+++.++.|+.+...+.   .++++++.|+
T Consensus       300 ~~~~~----~~~~~~~~~~~~~s----p~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~  371 (706)
T 2z3z_A          300 LFVET----DKHYVEPLHPLTFL----PGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLY  371 (706)
T ss_dssp             EEEEE----CSSCCCCCSCCEEC----TTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEE
T ss_pred             EEEcc----CCCeECccCCceee----cCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEE
Confidence            54221    11222111223454    3  4556677777788999999987777888876433332   3478899988


Q ss_pred             EEEecCC-CCCeEEEEEcCCCceeee
Q 008927          415 VEGASGV-EPSSVAKVTLDDHKLKAV  439 (548)
Q Consensus       415 ~~~ss~~-~p~~l~~~d~~~~~~~~~  439 (548)
                      +..+... ....||.+|+++++.+.+
T Consensus       372 ~~~~~~~~~~~~l~~~d~~~~~~~~l  397 (706)
T 2z3z_A          372 FESTEASPLERHFYCIDIKGGKTKDL  397 (706)
T ss_dssp             EEESSSCTTCBEEEEEETTCCCCEES
T ss_pred             EEecCCCCceEEEEEEEcCCCCceec
Confidence            8775422 135899999887765433

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.69  E-value=9.2e-15  Score=142.67  Aligned_cols=232  Identities=12%  Similarity=0.139  Sum_probs=158.5

Q ss_pred             eeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      ..|+|++..|++..  ++.|+++++++. ++.+.+....  ....+..+.|+|||+.|++...+..     ....||.++
T Consensus        47 ~~~spdg~~l~~~~--~~~i~~~d~~~~-~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~-----~~~~l~~~~  116 (297)
T 2ojh_A           47 PNWSPDGKYLLLNS--EGLLYRLSLAGD-PSPEKVDTGF--ATICNNDHGISPDGALYAISDKVEF-----GKSAIYLLP  116 (297)
T ss_dssp             EEECTTSSEEEEEE--TTEEEEEESSSC-CSCEECCCTT--CCCBCSCCEECTTSSEEEEEECTTT-----SSCEEEEEE
T ss_pred             eEECCCCCEEEEEc--CCeEEEEeCCCC-CCceEecccc--ccccccceEECCCCCEEEEEEeCCC-----CcceEEEEE
Confidence            46888899999987  678999999751 3456665432  1234667899999999988753321     246899999


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      +.++.   .+.+..... ...+.|||||++|+|.....     ....||.++++. ++   ...+....    ..+..+.
T Consensus       117 ~~~~~---~~~~~~~~~-~~~~~~spdg~~l~~~~~~~-----~~~~l~~~~~~~-~~---~~~~~~~~----~~~~~~~  179 (297)
T 2ojh_A          117 STGGT---PRLMTKNLP-SYWHGWSPDGKSFTYCGIRD-----QVFDIYSMDIDS-GV---ETRLTHGE----GRNDGPD  179 (297)
T ss_dssp             TTCCC---CEECCSSSS-EEEEEECTTSSEEEEEEEET-----TEEEEEEEETTT-CC---EEECCCSS----SCEEEEE
T ss_pred             CCCCc---eEEeecCCC-ccceEECCCCCEEEEEECCC-----CceEEEEEECCC-Cc---ceEcccCC----Cccccce
Confidence            99988   777765543 56679999999999876432     134788887763 43   33344332    4567799


Q ss_pred             ECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC--------
Q 008927          308 WSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN--------  378 (548)
Q Consensus       308 wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~--------  378 (548)
                      |+|||+ |++.+.. .+...||.+++.+++.+.+.......         ....|.|   +++.|++....+        
T Consensus       180 ~s~dg~~l~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~---------~~~~~s~---dg~~l~~~~~~~~~~~~~~~  246 (297)
T 2ojh_A          180 YSPDGRWIYFNSSR-TGQMQIWRVRVDGSSVERITDSAYGD---------WFPHPSP---SGDKVVFVSYDADVFDHPRD  246 (297)
T ss_dssp             ECTTSSEEEEEECT-TSSCEEEEEETTSSCEEECCCCSEEE---------EEEEECT---TSSEEEEEEEETTCCSCCSS
T ss_pred             ECCCCCEEEEEecC-CCCccEEEECCCCCCcEEEecCCccc---------CCeEECC---CCCEEEEEEcCCCCCccccc
Confidence            999999 7777765 67789999998777777665321111         1134554   788888777654        


Q ss_pred             CeEEEEEEECCCCceEeecC---CCceeEe--eeecCCEEEEEEec
Q 008927          379 GRSYLGILDDFGHSLSLLDI---PFTDIDN--ITLGNDCLFVEGAS  419 (548)
Q Consensus       379 g~~~L~~~dl~~g~~~~l~~---~~~~~~~--~s~d~~~l~~~~ss  419 (548)
                      +...|+++|+++++.+.+..   ....+..  ++++++.|++....
T Consensus       247 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          247 LDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             EEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             CceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            34789999999887765542   1122332  37888888877664

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.67  E-value=4.1e-15  Score=173.07  Aligned_cols=305  Identities=10%  Similarity=0.002  Sum_probs=190.9

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC---
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD---  164 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~---  164 (548)
                      ..+..+++|| |++|+|...++.+.+...|+.++..+ ++.++|+.....++++.+++...+|+|||+ |+|+...+   
T Consensus        53 ~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~-g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~~~~~~~  130 (1045)
T 1k32_A           53 GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN-GEIKRITYFSGKSTGRRMFTDVAGFDPDGN-LIISTDAMQPF  130 (1045)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT-TEEEECCCCCEEEETTEECSEEEEECTTCC-EEEEECTTSSS
T ss_pred             CcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCC-CCeEEcccCCCcccccccccccccCCCCCE-EEEEECCcCCC
Confidence            5678899999 99999998765455778888887664 578888876555555666666778999998 88887543   


Q ss_pred             ---CeEEEEeCCCCCCCceecCCCCCCC----------------------------------------------Cceecc
Q 008927          165 ---QRLYKHSIDSKDSSPLPITPDYGEP----------------------------------------------LVSYAD  195 (548)
Q Consensus       165 ---~~Ly~~~~~~~~~~~~~lT~~~~~~----------------------------------------------~~~~~~  195 (548)
                         .+||++++++  +++++|+......                                              ......
T Consensus       131 ~~~~~l~~~~~~~--g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~  208 (1045)
T 1k32_A          131 SSMTCLYRVENDG--INFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSS  208 (1045)
T ss_dssp             TTCCEEEEEEGGG--TEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEE
T ss_pred             cccceEEEEECCC--CCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccc
Confidence               4799999987  6777776541000                                              000112


Q ss_pred             eeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEec------C----
Q 008927          196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWH------H----  265 (548)
Q Consensus       196 ~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~------~----  265 (548)
                      +.|++|  .++|+++..      ....||.++++++.   .++++.... +..+.|||||++|+|....      .    
T Consensus       209 ~~~s~d--~l~~~~~~d------g~~~l~~~~~~g~~---~~~l~~~~~-~~~~~~SpDG~~la~~~~~~i~~~d~~~~~  276 (1045)
T 1k32_A          209 PVIVGH--RIYFITDID------GFGQIYSTDLDGKD---LRKHTSFTD-YYPRHLNTDGRRILFSKGGSIYIFNPDTEK  276 (1045)
T ss_dssp             EEEETT--EEEEEECTT------SSCEEEEEETTSCS---CEECCCCCS-SCEEEEEESSSCEEEEETTEEEEECTTTCC
T ss_pred             eEEeCC--EEEEEEecc------CceEEEEEeCCCCc---ceEecCCCC-cceeeEcCCCCEEEEEeCCEEEEecCCceE
Confidence            345554  555654321      23578989988876   667765443 2345777777777664310      0    


Q ss_pred             ----CC------------------CCC---C--------CceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCC
Q 008927          266 ----PN------------------MPW---D--------KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (548)
Q Consensus       266 ----~~------------------~p~---~--------~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG  312 (548)
                          ..                  +.|   +        ...|++.++. +++   .+.+.... .  ..+..+.|+ ||
T Consensus       277 l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~-~~~---~~~~~~~~-~--~~~~~~~~s-dg  348 (1045)
T 1k32_A          277 IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVS-GTY---VLKVPEPL-R--IRYVRRGGD-TK  348 (1045)
T ss_dssp             EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTT-SSB---EEECSCCS-C--EEEEEECSS-SE
T ss_pred             eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCC-CCc---eEEccCCC-c--ceEEeeeEc-CC
Confidence                00                  000   0        1234444443 122   22233222 1  145678999 99


Q ss_pred             c-EEEEEeCCCCeeeEE-EEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCC
Q 008927          313 E-LFFVTDRKNGFWNLH-KWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG  390 (548)
Q Consensus       313 ~-L~~~sd~~~g~~~Ly-~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~  390 (548)
                      + |++.++.    ..|| ++++++++.+.++......         ..+.|+|   |++.|++... +  ..|+++|+++
T Consensus       349 ~~l~~~s~~----~~l~~~~d~~~~~~~~l~~~~~~~---------~~~~~Sp---DG~~la~~~~-~--~~v~~~d~~t  409 (1045)
T 1k32_A          349 VAFIHGTRE----GDFLGIYDYRTGKAEKFEENLGNV---------FAMGVDR---NGKFAVVAND-R--FEIMTVDLET  409 (1045)
T ss_dssp             EEEEEEETT----EEEEEEEETTTCCEEECCCCCCSE---------EEEEECT---TSSEEEEEET-T--SEEEEEETTT
T ss_pred             CeEEEEECC----CceEEEEECCCCCceEecCCccce---------eeeEECC---CCCEEEEECC-C--CeEEEEECCC
Confidence            9 8888763    4788 8898888877776211111         1245655   7888876542 2  3788999999


Q ss_pred             CceEeec-CCCceeE--eeeecCCEEEEEEecC------CCCCeEEEEEcCCCce
Q 008927          391 HSLSLLD-IPFTDID--NITLGNDCLFVEGASG------VEPSSVAKVTLDDHKL  436 (548)
Q Consensus       391 g~~~~l~-~~~~~~~--~~s~d~~~l~~~~ss~------~~p~~l~~~d~~~~~~  436 (548)
                      |+.+.+. .....+.  .+++|++.|++.....      .....|+++|+++++.
T Consensus       410 g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~  464 (1045)
T 1k32_A          410 GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI  464 (1045)
T ss_dssp             CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred             CceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE
Confidence            9887765 3222233  2378999988877643      3456899999988764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.67  E-value=1.2e-14  Score=141.95  Aligned_cols=229  Identities=10%  Similarity=0.039  Sum_probs=161.2

Q ss_pred             CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCC-CCccCcEEeeec
Q 008927          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQEPKVLVSG  242 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~-g~~~~~~~L~~~  242 (548)
                      ++.|+++++.+  ++.+.+...    ...+..+.|||||+.|++.. +         ..|+++|+++ ++   ...+..+
T Consensus        21 ~~~i~~~d~~~--~~~~~~~~~----~~~v~~~~~spdg~~l~~~~-~---------~~i~~~d~~~~~~---~~~~~~~   81 (297)
T 2ojh_A           21 RSSIEIFNIRT--RKMRVVWQT----PELFEAPNWSPDGKYLLLNS-E---------GLLYRLSLAGDPS---PEKVDTG   81 (297)
T ss_dssp             CEEEEEEETTT--TEEEEEEEE----SSCCEEEEECTTSSEEEEEE-T---------TEEEEEESSSCCS---CEECCCT
T ss_pred             ceeEEEEeCCC--CceeeeccC----CcceEeeEECCCCCEEEEEc-C---------CeEEEEeCCCCCC---ceEeccc
Confidence            56899999987  666666543    23456788999999988853 2         3799999999 87   6777654


Q ss_pred             C--CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEe
Q 008927          243 S--DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTD  319 (548)
Q Consensus       243 ~--~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd  319 (548)
                      .  .....+.|||||++|++...+..    ....||.++++. +.   .+.+...     ..+..+.|+|||+ |++...
T Consensus        82 ~~~~~~~~~~~spdg~~l~~~~~~~~----~~~~l~~~~~~~-~~---~~~~~~~-----~~~~~~~~spdg~~l~~~~~  148 (297)
T 2ojh_A           82 FATICNNDHGISPDGALYAISDKVEF----GKSAIYLLPSTG-GT---PRLMTKN-----LPSYWHGWSPDGKSFTYCGI  148 (297)
T ss_dssp             TCCCBCSCCEECTTSSEEEEEECTTT----SSCEEEEEETTC-CC---CEECCSS-----SSEEEEEECTTSSEEEEEEE
T ss_pred             cccccccceEECCCCCEEEEEEeCCC----CcceEEEEECCC-Cc---eEEeecC-----CCccceEECCCCCEEEEEEC
Confidence            4  34567899999999998774322    256899999873 43   3344432     2356679999999 777776


Q ss_pred             CCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCC
Q 008927          320 RKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP  399 (548)
Q Consensus       320 ~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~  399 (548)
                      . .+...||.+++.+++.+.+.......         ..+.|.|   +++.|++....++..+||.+++.+++.+.+...
T Consensus       149 ~-~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~s~---dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~  215 (297)
T 2ojh_A          149 R-DQVFDIYSMDIDSGVETRLTHGEGRN---------DGPDYSP---DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS  215 (297)
T ss_dssp             E-TTEEEEEEEETTTCCEEECCCSSSCE---------EEEEECT---TSSEEEEEECTTSSCEEEEEETTSSCEEECCCC
T ss_pred             C-CCceEEEEEECCCCcceEcccCCCcc---------ccceECC---CCCEEEEEecCCCCccEEEECCCCCCcEEEecC
Confidence            6 67789999998888777665322111         1244554   777788776667888999999888888777654


Q ss_pred             CceeEe--eeecCCEEEEEEecCC-------CCCeEEEEEcCCCcee
Q 008927          400 FTDIDN--ITLGNDCLFVEGASGV-------EPSSVAKVTLDDHKLK  437 (548)
Q Consensus       400 ~~~~~~--~s~d~~~l~~~~ss~~-------~p~~l~~~d~~~~~~~  437 (548)
                      ...+..  ++++++.|++......       ....|+++|+++++.+
T Consensus       216 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  262 (297)
T 2ojh_A          216 AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE  262 (297)
T ss_dssp             SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred             CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence            433333  3788898888776432       2357999999887754

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.66  E-value=5.1e-15  Score=163.39  Aligned_cols=251  Identities=13%  Similarity=0.070  Sum_probs=164.4

Q ss_pred             eEEECCEEEEEeCC---C--CeEEEEeCCCCCCCceecCCCCCCCCce-----ec--ceeeC--CCCCE-EEEEEeccCC
Q 008927          150 FRIFGDTVIFSNYK---D--QRLYKHSIDSKDSSPLPITPDYGEPLVS-----YA--DGIFD--PRFNR-YVTVREDRRQ  214 (548)
Q Consensus       150 ~~~~~~~i~F~~~~---~--~~Ly~~~~~~~~~~~~~lT~~~~~~~~~-----~~--~~~~S--pDG~~-i~~v~~~~~~  214 (548)
                      .+++++.++|...+   +  ..||.+ ..+  +++++||....  ..+     +.  .+.|+  |||++ |+|....   
T Consensus        29 ~~~s~~~~~~~~~~~~~~~~~~l~~~-~~~--~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~---  100 (662)
T 3azo_A           29 VGAVGDEVWWVAPRPAEAGRATLVRR-RAD--GAEESALPAPW--NVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG---  100 (662)
T ss_dssp             EEEETTEEEEEEEETTTTTEEEEEEE-CTT--SCEEESSCTTC--CBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT---
T ss_pred             eEEcCCeEEEEecCcccCCcEEEEEE-CCC--CCcceeCCCCc--cccccccccCCccceeeeecCCCeEEEEEECC---
Confidence            44568899998752   2  378888 444  67889987631  111     11  34455  99999 8886322   


Q ss_pred             CCCCceeEEEEEECC--C-CCccCcEEeee-----cCCceeeeEECCCCCEEEEEEecCCC-CC-CCCceEEEEEecCC-
Q 008927          215 DALNSTTEIVAIALN--G-QNIQEPKVLVS-----GSDFYAFPRMDPRGERMAWIEWHHPN-MP-WDKAELWVGYISEN-  283 (548)
Q Consensus       215 ~~~~~~~~l~~idl~--~-g~~~~~~~L~~-----~~~~~~~p~~SPDGk~La~~~~~~~~-~p-~~~~~L~v~~~~~~-  283 (548)
                           ..+||.+++.  + ++   .++|+.     .......++|||||++|+|.+.++.. .+ ....+||++++++. 
T Consensus       101 -----~~~l~~~~~~~~g~~~---~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  172 (662)
T 3azo_A          101 -----DQRLYAFEPDAPGGAV---PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA  172 (662)
T ss_dssp             -----TCCEEEECTTSTTCCC---CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred             -----CCeEEEEcCCCCCCCC---CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence                 2469999998  5 77   788876     23456789999999999998855211 01 12368999999741 


Q ss_pred             ----CceeeeEEEc-CCCCCcccCCcCceECcCCc-EEEEEeCCC----CeeeEEEEecc-CC---eeEeeccc-ccccC
Q 008927          284 ----GDVYKRVCVA-GFDPTIVESPTEPKWSSKGE-LFFVTDRKN----GFWNLHKWIES-NN---EVLAIYSL-DAEFS  348 (548)
Q Consensus       284 ----g~~~~~~~l~-~~~~~~~~~~~~~~wspDG~-L~~~sd~~~----g~~~Ly~~d~~-~g---~~~~l~~~-~~d~~  348 (548)
                          ++   .+.+. ...    ..+..+.|||||+ |++.+....    +..+||+++++ +|   +.+.|+.. .....
T Consensus       173 ~~~~~~---~~~l~~~~~----~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~  245 (662)
T 3azo_A          173 AADRSA---VRELSDDAH----RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA  245 (662)
T ss_dssp             TTCGGG---SEESSCSCS----SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE
T ss_pred             cccCCc---eeEEEecCC----CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc
Confidence                43   34555 433    4567899999999 888764422    33689999998 57   56666532 11111


Q ss_pred             CCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCcee---------Eeee-ecCCEEEEEEe
Q 008927          349 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDI---------DNIT-LGNDCLFVEGA  418 (548)
Q Consensus       349 ~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~---------~~~s-~d~~~l~~~~s  418 (548)
                               ...|+|   |++ |++....++..+||++|+++++.++++.....+         ..+. .+++.+++..+
T Consensus       246 ---------~~~~sp---dg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~  312 (662)
T 3azo_A          246 ---------QAEWAP---DGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG  312 (662)
T ss_dssp             ---------EEEECT---TSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB
T ss_pred             ---------ceEECC---CCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE
Confidence                     234554   666 888887778889999999888888776432111         1222 23555777665


Q ss_pred             cCCCCCeEEEEEcCCCceee
Q 008927          419 SGVEPSSVAKVTLDDHKLKA  438 (548)
Q Consensus       419 s~~~p~~l~~~d~~~~~~~~  438 (548)
                      .  ....||++|+++++.+.
T Consensus       313 ~--~~~~l~~~d~~~~~~~~  330 (662)
T 3azo_A          313 K--GAAVLGILDPESGELVD  330 (662)
T ss_dssp             S--SSCEEEEEETTTTEEEE
T ss_pred             c--CccEEEEEECCCCcEEE
Confidence            5  56789999988776543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.66  E-value=9.8e-15  Score=145.19  Aligned_cols=260  Identities=9%  Similarity=0.085  Sum_probs=180.7

Q ss_pred             EEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC----------
Q 008927           95 AVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD----------  164 (548)
Q Consensus        95 ~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~----------  164 (548)
                      +.+ |+.|||....    +...|++++.+| .++++|+...  +         .-+.++|++|+|++..+          
T Consensus        22 ~~~-g~~iy~~n~~----d~~~ly~~~~dg-~~~~~l~~~~--~---------~~i~~~g~~Iyy~~~~~~~~~~~~~~~   84 (302)
T 3s25_A           22 CES-DGEVFFSNTN----DNGRLYAMNIDG-SNIHKLSNDT--A---------MYINADKNYVYYVRNNNQKITSQTFFS   84 (302)
T ss_dssp             EEE-TTEEEEEEGG----GTTEEEEEETTS-CSCEEEEEEE--E---------EEEEECSSEEEEEEECC------CCSS
T ss_pred             EEe-CCEEEEEeCC----CCceEEEEcCCC-CCCEEccCCc--e---------eeEEEcCCEEEEEECCCCcccccceec
Confidence            334 9999998743    345799998885 4788888642  1         24678999999997653          


Q ss_pred             ---CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee
Q 008927          165 ---QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS  241 (548)
Q Consensus       165 ---~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~  241 (548)
                         ..||+++++|  ++.++|+...        ...++++|++|+|+.....     ....||++++++.+   .++|+.
T Consensus        85 ~n~~~Iy~i~~dg--~~~~~l~~~~--------~~~~s~~g~~Iy~~~~~~~-----~~~~Iy~~~~dGs~---~~~lt~  146 (302)
T 3s25_A           85 YDRNSLCRIKRNG--HGSTVLDPDP--------CIYASLIGNYIYYLHYDTQ-----TATSLYRIRIDGEE---KKKIKN  146 (302)
T ss_dssp             CCSEEEEEEETTS--CCCEEEECSC--------EEEEEEETTEEEEEEESSS-----SCEEEEEEETTSCC---CEEEES
T ss_pred             cCCCeEEEEeCCC--CcceEeecCC--------ccEEEEeCCEEEEEeecCC-----CCceEEEEECCCCC---eEEEeC
Confidence               4899999998  7788887752        1258889999999741111     23689999999988   888886


Q ss_pred             cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeC
Q 008927          242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR  320 (548)
Q Consensus       242 ~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~  320 (548)
                      ...    +.++|+|++|+|+..       ...+||++++++ +.   .+.+..+.    .  ..|.| |+|+ |||+...
T Consensus       147 ~~~----~~~~~~g~~iy~t~~-------g~~~Iy~~~l~g-~~---~~~l~~~~----~--~~~~~-P~g~~iy~t~~~  204 (302)
T 3s25_A          147 HYL----FTCNTSDRYFYYNNP-------KNGQLYRYDTAS-QS---EALFYDCN----C--YKPVV-LDDTNVYYMDVN  204 (302)
T ss_dssp             SCC----CCSEEETTEEEEECT-------TTCCEEEEETTT-TE---EEEEECSC----E--EEEEE-EETTEEEEEEGG
T ss_pred             CCc----eEeeEECCEEEEEeC-------CCceEEEEECCC-CC---EEEEeCCC----c--cceee-ecCCEEEEEEcC
Confidence            542    347889999998863       145799999974 42   23343322    1  23544 9998 7776543


Q ss_pred             CCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCC
Q 008927          321 KNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF  400 (548)
Q Consensus       321 ~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~  400 (548)
                       .+ .+|++++++++..+.|+...    . .|      +.+     +++.|||..... ..+|+++++++...+.|... 
T Consensus       205 -~~-~~I~~~~ldG~~~~~Lt~~~----~-~~------~~~-----~g~~Iy~~~~~~-~~~i~~~~~DG~~r~~l~~~-  264 (302)
T 3s25_A          205 -RD-NAIVHVNINNPNPVVLTEAN----I-EH------YNV-----YGSLIFYQRGGD-NPALCVVKNDGTGFKELAKG-  264 (302)
T ss_dssp             -GT-TEEEEECSSSCCCEECSCSC----E-EE------EEE-----ETTEEEEEECSS-SCEEEEEETTSCCCEEEEES-
T ss_pred             -CC-cEEEEEECCCCCeEEEeCCC----c-ce------EEE-----CCCEEEEEECCC-CcEEEEEECCCCccEEeeCC-
Confidence             34 78999999988888787421    1 22      233     688998875433 37899999988777777643 


Q ss_pred             ceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          401 TDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       401 ~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                       .+..++..+++|+|+-..   ...|+++++++..
T Consensus       265 -~~~~i~i~~d~Iy~td~~---~~~i~~~~~dGs~  295 (302)
T 3s25_A          265 -EFCNINVTSQYVYFTDFV---SNKEYCTSTQNPD  295 (302)
T ss_dssp             -CEEEEEECSSEEEEEETT---TCCEEEEESSSCC
T ss_pred             -ccceEEEeCCEEEEEECC---CCeEEEEECCCCC
Confidence             234567788999987543   2349999876543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.65  E-value=1.7e-14  Score=143.38  Aligned_cols=235  Identities=14%  Similarity=0.163  Sum_probs=165.5

Q ss_pred             CeeeEEECCEEEEEeCC-CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCC-CC----Cce
Q 008927          147 GGAFRIFGDTVIFSNYK-DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-AL----NST  220 (548)
Q Consensus       147 g~~~~~~~~~i~F~~~~-~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~-~~----~~~  220 (548)
                      ++-++.+|+.|+|.+.. +.+||+++.+|  .++++|+..    .  ..  -++++|++|+|+....... ..    ..+
T Consensus        18 ~g~~~~~g~~iy~~n~~d~~~ly~~~~dg--~~~~~l~~~----~--~~--~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~   87 (302)
T 3s25_A           18 AGLFCESDGEVFFSNTNDNGRLYAMNIDG--SNIHKLSND----T--AM--YINADKNYVYYVRNNNQKITSQTFFSYDR   87 (302)
T ss_dssp             TTCEEEETTEEEEEEGGGTTEEEEEETTS--CSCEEEEEE----E--EE--EEEECSSEEEEEEECC------CCSSCCS
T ss_pred             ceEEEEeCCEEEEEeCCCCceEEEEcCCC--CCCEEccCC----c--ee--eEEEcCCEEEEEECCCCcccccceeccCC
Confidence            35688999999999754 46999999998  889999875    1  22  3678999999986543100 00    025


Q ss_pred             eEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (548)
Q Consensus       221 ~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~  300 (548)
                      ..||++++++++   .++|......    .|+++|++|+|......    ....||.+++++.+    .+.|+...    
T Consensus        88 ~~Iy~i~~dg~~---~~~l~~~~~~----~~s~~g~~Iy~~~~~~~----~~~~Iy~~~~dGs~----~~~lt~~~----  148 (302)
T 3s25_A           88 NSLCRIKRNGHG---STVLDPDPCI----YASLIGNYIYYLHYDTQ----TATSLYRIRIDGEE----KKKIKNHY----  148 (302)
T ss_dssp             EEEEEEETTSCC---CEEEECSCEE----EEEEETTEEEEEEESSS----SCEEEEEEETTSCC----CEEEESSC----
T ss_pred             CeEEEEeCCCCc---ceEeecCCcc----EEEEeCCEEEEEeecCC----CCceEEEEECCCCC----eEEEeCCC----
Confidence            789999999998   8888865432    68899999999863222    25789999997422    34455432    


Q ss_pred             cCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC
Q 008927          301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (548)
Q Consensus       301 ~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g  379 (548)
                      .    +.|+++|+ |||.++   |..+||+++++++..+.|...      +...      .+.|   +++.|+|+...++
T Consensus       149 ~----~~~~~~g~~iy~t~~---g~~~Iy~~~l~g~~~~~l~~~------~~~~------~~~P---~g~~iy~t~~~~~  206 (302)
T 3s25_A          149 L----FTCNTSDRYFYYNNP---KNGQLYRYDTASQSEALFYDC------NCYK------PVVL---DDTNVYYMDVNRD  206 (302)
T ss_dssp             C----CCSEEETTEEEEECT---TTCCEEEEETTTTEEEEEECS------CEEE------EEEE---ETTEEEEEEGGGT
T ss_pred             c----eEeeEECCEEEEEeC---CCceEEEEECCCCCEEEEeCC------Cccc------eeee---cCCEEEEEEcCCC
Confidence            1    34678999 888865   456899999988887777532      1111      1223   7899998754444


Q ss_pred             eEEEEEEECCCCceEeecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 008927          380 RSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLK  437 (548)
Q Consensus       380 ~~~L~~~dl~~g~~~~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~  437 (548)
                       .+|++++++++..+.|+...  +..+++++++|++.....  ...|+++++++...+
T Consensus       207 -~~I~~~~ldG~~~~~Lt~~~--~~~~~~~g~~Iy~~~~~~--~~~i~~~~~DG~~r~  259 (302)
T 3s25_A          207 -NAIVHVNINNPNPVVLTEAN--IEHYNVYGSLIFYQRGGD--NPALCVVKNDGTGFK  259 (302)
T ss_dssp             -TEEEEECSSSCCCEECSCSC--EEEEEEETTEEEEEECSS--SCEEEEEETTSCCCE
T ss_pred             -cEEEEEECCCCCeEEEeCCC--cceEEECCCEEEEEECCC--CcEEEEEECCCCccE
Confidence             78999999998888887532  334688999998765432  379999999876644

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.65  E-value=5e-14  Score=157.17  Aligned_cols=259  Identities=8%  Similarity=-0.003  Sum_probs=166.0

Q ss_pred             EEECCEEEEEeCCC----CeEEEEeCCCCCCCceecCCCC---CCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 008927          151 RIFGDTVIFSNYKD----QRLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (548)
Q Consensus       151 ~~~~~~i~F~~~~~----~~Ly~~~~~~~~~~~~~lT~~~---~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l  223 (548)
                      +++|++++|.....    ..||+++..+  ++++.|+...   ++....+..+.|||||++|+|...+...    ....|
T Consensus        80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~----~~~~i  153 (710)
T 2xdw_A           80 FKKGKRYFYFYNTGLQNQRVLYVQDSLE--GEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGS----DWVTI  153 (710)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEESSTT--SCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTC----SCEEE
T ss_pred             EEECCEEEEEEEcCCceEEEEEEEcCCC--CCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCC----ceEEE
Confidence            48999999986442    3789999876  6666553210   0012356788999999999998655321    24689


Q ss_pred             EEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCC--------CCCCceEEEEEecCCCceeeeEEEcCC
Q 008927          224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM--------PWDKAELWVGYISENGDVYKRVCVAGF  295 (548)
Q Consensus       224 ~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~--------p~~~~~L~v~~~~~~g~~~~~~~l~~~  295 (548)
                      +++|+++|+   ...++.....+..+.|||||+.|+|.+.+.+..        .+...+||+.++.+ +.. +.+++...
T Consensus       154 ~v~d~~tg~---~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t-~~~-~~~~v~~~  228 (710)
T 2xdw_A          154 KFMKVDGAK---ELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGT-DQS-EDILCAEF  228 (710)
T ss_dssp             EEEETTTTE---EEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTS-CGG-GCEEEECC
T ss_pred             EEEECCCCC---CCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCC-Ccc-cceEEecc
Confidence            999999998   555432222245789999999999988543310        02245799999974 432 12333222


Q ss_pred             CCCcccCCcCceECcCCc-EEEEEeCCCC-eeeEEEEeccC------C--eeEeecccccccCCCcccccCcceeeeeec
Q 008927          296 DPTIVESPTEPKWSSKGE-LFFVTDRKNG-FWNLHKWIESN------N--EVLAIYSLDAEFSRPLWVFGINSYEIIQSH  365 (548)
Q Consensus       296 ~~~~~~~~~~~~wspDG~-L~~~sd~~~g-~~~Ly~~d~~~------g--~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~  365 (548)
                      ... ......+.|||||+ |++.+.+..+ ..+||++|+++      +  +.+.|+....    ..      .+.+.+  
T Consensus       229 ~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~----~~------~~~~s~--  295 (710)
T 2xdw_A          229 PDE-PKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE----GE------YDYVTN--  295 (710)
T ss_dssp             TTC-TTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS----SC------EEEEEE--
T ss_pred             CCC-CeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC----cE------EEEEec--
Confidence            100 02345789999999 8887765232 56899999976      5  4566653211    00      123444  


Q ss_pred             CCCCEEEEEEEeCC-eEEEEEEECCCCc---eEeecCCCc--eeEeee-ecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          366 GEKNLIACSYRQNG-RSYLGILDDFGHS---LSLLDIPFT--DIDNIT-LGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       366 ~d~~~l~~~~~~~g-~~~L~~~dl~~g~---~~~l~~~~~--~~~~~s-~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                       +++.|++..+.++ ..+|+++|++++.   ++.|..+..  .+..+. .+++.+++.... .....|+++++.+++
T Consensus       296 -dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~-~g~~~l~~~~~~~g~  370 (710)
T 2xdw_A          296 -EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH-DVKNTLQLHDLATGA  370 (710)
T ss_dssp             -ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE-TTEEEEEEEETTTCC
T ss_pred             -cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE-CCEEEEEEEECCCCC
Confidence             7889998876554 6789999998874   466654322  455553 347777777654 334679999985554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.65  E-value=2.3e-14  Score=159.52  Aligned_cols=257  Identities=11%  Similarity=-0.001  Sum_probs=166.8

Q ss_pred             eEEECCEEEEEeCCC----CeEEEEeCCCCCCCceecCCCC---CCCCceecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 008927          150 FRIFGDTVIFSNYKD----QRLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE  222 (548)
Q Consensus       150 ~~~~~~~i~F~~~~~----~~Ly~~~~~~~~~~~~~lT~~~---~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~  222 (548)
                      .+++|++|+|.....    ..||+++.++  +++++|+...   ++.......+.|||||++|+|.......    ....
T Consensus        75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~----~~~~  148 (695)
T 2bkl_A           75 PSRRNGRFFYVRTHKDKEKAILYWRQGES--GQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAA----DEAV  148 (695)
T ss_dssp             CEEETTEEEEEEECTTCSSCEEEEEESTT--SCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTC----SCCE
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCC--CCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCC----ceEE
Confidence            458999999987543    4799999877  7788887531   0011356788999999999998654321    2468


Q ss_pred             EEEEECCCCCccCcE---EeeecCCceeeeEECCCCCEEEEEEecCCCC-----CCCCceEEEEEecCCCceeeeEEEcC
Q 008927          223 IVAIALNGQNIQEPK---VLVSGSDFYAFPRMDPRGERMAWIEWHHPNM-----PWDKAELWVGYISENGDVYKRVCVAG  294 (548)
Q Consensus       223 l~~idl~~g~~~~~~---~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~-----p~~~~~L~v~~~~~~g~~~~~~~l~~  294 (548)
                      |+++|+++|+   ..   .+. +. .+..+.|||||+.|+|.+.+....     .+...+||+.++.+ +.. +.+++..
T Consensus       149 i~v~dl~tg~---~~~~~~~~-~~-~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t-~~~-~~~lv~~  221 (695)
T 2bkl_A          149 LHVIDVDSGE---WSKVDVIE-GG-KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGT-EPS-KDTVVHE  221 (695)
T ss_dssp             EEEEETTTCC---BCSSCCBS-CC-TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTS-CGG-GCEEEEC
T ss_pred             EEEEECCCCC---CcCCcccC-cc-cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCC-Cch-hceEEEe
Confidence            9999999997   43   121 11 125789999999999988654310     01245799999974 331 1233433


Q ss_pred             CCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEE
Q 008927          295 FDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIAC  373 (548)
Q Consensus       295 ~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~  373 (548)
                      .... ...+..+.|||||+ |++.+....+..+||.++..+++.+.|+......    +     ...+ +   +++ |++
T Consensus       222 ~~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~----~-----~~~~-~---~g~-l~~  286 (695)
T 2bkl_A          222 RTGD-PTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAK----Y-----EVHA-W---KDR-FYV  286 (695)
T ss_dssp             CCCC-TTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCC----E-----EEEE-E---TTE-EEE
T ss_pred             cCCC-CEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCce----E-----EEEe-c---CCc-EEE
Confidence            2100 02456789999999 8887765236778999988777777776432111    1     1122 2   677 777


Q ss_pred             EEEeC-CeEEEEEEECCCCc---eEeecCC--CceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          374 SYRQN-GRSYLGILDDFGHS---LSLLDIP--FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       374 ~~~~~-g~~~L~~~dl~~g~---~~~l~~~--~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      ..+.+ +...|+++|+++++   ++.|..+  ...+..++..++.+++.... +....|++++++++.
T Consensus       287 ~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~-dg~~~l~~~~~~g~~  353 (695)
T 2bkl_A          287 LTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLK-DATSEVRVATLKGKP  353 (695)
T ss_dssp             EECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEE-TTEEEEEEEETTCCE
T ss_pred             EECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEE-CCEEEEEEEeCCCCe
Confidence            76544 46789999998876   3555533  33455555457777777654 345688999976543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.62  E-value=6.5e-15  Score=148.71  Aligned_cols=248  Identities=10%  Similarity=0.044  Sum_probs=161.3

Q ss_pred             ccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCC-----
Q 008927           90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK-----  163 (548)
Q Consensus        90 ~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~-----  163 (548)
                      .+..+++|| |++|+|+..+.. ++...||.++..+ ++.++++..+.     +   ....|+|||+.|+|....     
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~-~~~~~l~~~~~~~-g~~~~l~~~~~-----~---~~~~wspdg~~l~~~~~~~~~~~  129 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEE-KKVSEIWVADLET-LSSKKILEAKN-----I---RSLEWNEDSRKLLIVGFKRREDE  129 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETT-TTEEEEEEEETTT-TEEEEEEEESE-----E---EEEEECTTSSEEEEEEECCCC--
T ss_pred             cCCCeEECCCCCEEEEEEeccC-CCcceEEEEECCC-CceEEEEcCCC-----c---cceeECCCCCEEEEEEccCCCcC
Confidence            456799999 999999976531 3677898887653 46777775431     1   234788999999998632     


Q ss_pred             ---------------------CCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCc-e
Q 008927          164 ---------------------DQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNS-T  220 (548)
Q Consensus       164 ---------------------~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~-~  220 (548)
                                           ..+||++++++  ++. ++|+. .     ....+.|||||  |+|+........... .
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~--~~~~~~l~~-~-----~~~~~~~spdg--~~~~~~~~~~~~~~~~~  199 (347)
T 2gop_A          130 DFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES--EEVIEEFEK-P-----RFSSGIWHRDK--IVVNVPHREIIPQYFKF  199 (347)
T ss_dssp             -------CCCC---------CEEEEEEEETTT--TEEEEEEEE-E-----TTCEEEEETTE--EEEEEECCCSSCCSSCC
T ss_pred             CcEEEcccceeecCcccccCccceEEEEECCC--CeEEeeecC-C-----CcccccCCCCe--EEEEEeccccccccccc
Confidence                                 35899999987  666 77764 1     34567899999  677654321111012 4


Q ss_pred             eEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (548)
Q Consensus       221 ~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~  300 (548)
                      .+||.+|  +++   .+.|+.+ .....  +||||++|+|.............+||+++ .  ++   .+.+.... .  
T Consensus       200 ~~l~~~d--~~~---~~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~--~~---~~~l~~~~-~--  262 (347)
T 2gop_A          200 WDIYIWE--DGK---EEKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD-G--KE---VMGILDEV-D--  262 (347)
T ss_dssp             EEEEEEE--TTE---EEEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC-S--SC---EEESSTTC-C--
T ss_pred             ccEEEeC--CCc---eEEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC-C--Cc---eEeccccC-C--
Confidence            6899999  666   6777765 33333  49999999998744322222356899988 2  43   33344322 1  


Q ss_pred             cCCcC-ceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC
Q 008927          301 ESPTE-PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (548)
Q Consensus       301 ~~~~~-~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g  379 (548)
                      ..+.. +.|+ || +++.... .+...|| ++  +|+.+.++.....+         ..+.+.    .  .++++....+
T Consensus       263 ~~~~~~~~~s-dg-~~~~~~~-~~~~~l~-~~--~g~~~~~~~~~~~v---------~~~~~s----~--~~~~~~~~~~  321 (347)
T 2gop_A          263 RGVGQAKIKD-GK-VYFTLFE-EGSVNLY-IW--DGEIKPIAKGRHWI---------MGFDVD----E--IVVYLKETAT  321 (347)
T ss_dssp             SEEEEEEEET-TE-EEEEEEE-TTEEEEE-EE--SSSEEEEECSSSEE---------EEEEES----S--SEEEEEECSS
T ss_pred             cccCCccEEc-Cc-EEEEEec-CCcEEEE-Ec--CCceEEEecCCCeE---------Eeeeee----C--cEEEEEcCCC
Confidence            34554 8999 98 8888766 6788899 88  46666665321111         124453    3  5667766555


Q ss_pred             eE-EEEEEECCCCceEeecC
Q 008927          380 RS-YLGILDDFGHSLSLLDI  398 (548)
Q Consensus       380 ~~-~L~~~dl~~g~~~~l~~  398 (548)
                      .. +||.+|   |+.++|+.
T Consensus       322 ~~~~l~~~~---g~~~~lt~  338 (347)
T 2gop_A          322 RLRELFTWD---GEEKQLTD  338 (347)
T ss_dssp             SCCEEEEES---SSEEECCC
T ss_pred             ChHHheEeC---CcEEEecc
Confidence            54 899987   66777764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.62  E-value=1.2e-13  Score=154.89  Aligned_cols=260  Identities=10%  Similarity=0.027  Sum_probs=165.1

Q ss_pred             eEEECCEEEEEeCCC----CeEEEEeCC---CCCCCceecCCCC---CCCCceecceeeCCCCCEEEEEEeccCCCCCCc
Q 008927          150 FRIFGDTVIFSNYKD----QRLYKHSID---SKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNS  219 (548)
Q Consensus       150 ~~~~~~~i~F~~~~~----~~Ly~~~~~---~~~~~~~~lT~~~---~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~  219 (548)
                      .+++|++++|.....    ..||+++..   +  ++.+.|+...   ++.......+.|||||++|+|...+...    .
T Consensus       114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~----e  187 (741)
T 1yr2_A          114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVG--TKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGS----D  187 (741)
T ss_dssp             CEEETTEEEEEEECSSCSSCEEEEEETTSCTT--CCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTC----S
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCccCC--CCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCC----c
Confidence            458999999987443    478999986   5  6677653320   0011356678999999999998655321    2


Q ss_pred             eeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCC------CCCCceEEEEEecCCCceeeeEEEc
Q 008927          220 TTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM------PWDKAELWVGYISENGDVYKRVCVA  293 (548)
Q Consensus       220 ~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~------p~~~~~L~v~~~~~~g~~~~~~~l~  293 (548)
                      ...|+++|+++|+   ..........+..+.|||| +.|+|.+.+.+..      .....+||+.++.+ +.. +.+++.
T Consensus       188 ~~~i~v~dl~tg~---~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt-~~~-~~~lv~  261 (741)
T 1yr2_A          188 WRTVKFVGVADGK---PLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGT-PQS-ADQPVF  261 (741)
T ss_dssp             EEEEEEEETTTCC---EEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTS-CGG-GCEEEE
T ss_pred             eEEEEEEECCCCC---CCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCC-Cch-hCEEEe
Confidence            4689999999998   4443221112357899999 9999987543210      00135799999864 321 123343


Q ss_pred             CCCCCcccCCcCceECcCCc-EEEEEeCC-CCeeeEEEEeccCC--e-eEeecccccccCCCcccccCcceeeeeecCCC
Q 008927          294 GFDPTIVESPTEPKWSSKGE-LFFVTDRK-NGFWNLHKWIESNN--E-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEK  368 (548)
Q Consensus       294 ~~~~~~~~~~~~~~wspDG~-L~~~sd~~-~g~~~Ly~~d~~~g--~-~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~  368 (548)
                      ..... ...+..+.|||||+ |++.+.+. .+...||++|++++  + .+.|+.....    ..      +.+.+   ++
T Consensus       262 ~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~----~~------~~~~~---dg  327 (741)
T 1yr2_A          262 ATPEL-PKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA----QW------DFVDG---VG  327 (741)
T ss_dssp             CCTTC-TTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS----CE------EEEEE---ET
T ss_pred             ccCCC-CeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc----eE------EEEec---cC
Confidence            32200 01356789999999 88877552 24668999999887  5 6667642110    11      11223   78


Q ss_pred             CEEEEEEEeCC-eEEEEEEECCCC--ceEeecCC-CceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          369 NLIACSYRQNG-RSYLGILDDFGH--SLSLLDIP-FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       369 ~~l~~~~~~~g-~~~L~~~dl~~g--~~~~l~~~-~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      +.|++..+.++ ..+|+++|++++  +++.|... ...+..++..++.+++.... .....|++++++++..
T Consensus       328 ~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~-dg~~~l~~~~~~g~~~  398 (741)
T 1yr2_A          328 DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIH-DAKSQVLAFDLDGKPA  398 (741)
T ss_dssp             TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEE-TTEEEEEEEETTSCEE
T ss_pred             CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEE-CCEEEEEEEeCCCCce
Confidence            89998877554 678999999874  56666533 23355555557778777654 3456799999865543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.59  E-value=2.4e-13  Score=158.27  Aligned_cols=268  Identities=11%  Similarity=0.040  Sum_probs=185.3

Q ss_pred             CccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEE
Q 008927           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY  168 (548)
Q Consensus        89 ~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly  168 (548)
                      ..+..|.++ +++++|+...   +|...||.++.++ +..++|+... .+       ....|++||+.|+|..  ++.||
T Consensus       204 ~~v~~~~~s-~d~l~~~~~~---dg~~~l~~~~~~g-~~~~~l~~~~-~~-------~~~~~SpDG~~la~~~--~~~i~  268 (1045)
T 1k32_A          204 THVSSPVIV-GHRIYFITDI---DGFGQIYSTDLDG-KDLRKHTSFT-DY-------YPRHLNTDGRRILFSK--GGSIY  268 (1045)
T ss_dssp             SCCEEEEEE-TTEEEEEECT---TSSCEEEEEETTS-CSCEECCCCC-SS-------CEEEEEESSSCEEEEE--TTEEE
T ss_pred             CcccceEEe-CCEEEEEEec---cCceEEEEEeCCC-CcceEecCCC-Cc-------ceeeEcCCCCEEEEEe--CCEEE
Confidence            456678888 6688888643   5788899887653 4667777532 11       1247999999999986  77899


Q ss_pred             EEeCCCCCCCceecCCCCCC-------CCceecceeeC-CCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee
Q 008927          169 KHSIDSKDSSPLPITPDYGE-------PLVSYADGIFD-PRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV  240 (548)
Q Consensus       169 ~~~~~~~~~~~~~lT~~~~~-------~~~~~~~~~~S-pDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~  240 (548)
                      ++++.+  .....++.....       .......+.|| |||++|++.. +         ..|+++++.+++   .+.+.
T Consensus       269 ~~d~~~--~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~---------~~i~~~~~~~~~---~~~~~  333 (1045)
T 1k32_A          269 IFNPDT--EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-R---------GQAFIQDVSGTY---VLKVP  333 (1045)
T ss_dssp             EECTTT--CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-T---------TEEEEECTTSSB---EEECS
T ss_pred             EecCCc--eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-c---------CEEEEEcCCCCc---eEEcc
Confidence            999854  444444432100       00135578899 9999999975 1         369999999887   67776


Q ss_pred             ecCC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEE-EEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEE
Q 008927          241 SGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELW-VGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFV  317 (548)
Q Consensus       241 ~~~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~-v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~  317 (548)
                      .... ....+.|| ||++|+|.+.        ...|| +++++. ++   .+.+.+..    ..+..+.|||||+ |++.
T Consensus       334 ~~~~~~~~~~~~s-dg~~l~~~s~--------~~~l~~~~d~~~-~~---~~~l~~~~----~~~~~~~~SpDG~~la~~  396 (1045)
T 1k32_A          334 EPLRIRYVRRGGD-TKVAFIHGTR--------EGDFLGIYDYRT-GK---AEKFEENL----GNVFAMGVDRNGKFAVVA  396 (1045)
T ss_dssp             CCSCEEEEEECSS-SEEEEEEEET--------TEEEEEEEETTT-CC---EEECCCCC----CSEEEEEECTTSSEEEEE
T ss_pred             CCCcceEEeeeEc-CCCeEEEEEC--------CCceEEEEECCC-CC---ceEecCCc----cceeeeEECCCCCEEEEE
Confidence            5555 56788999 9999998872        35799 999874 43   23344332    4567899999999 7666


Q ss_pred             EeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC-------CeEEEEEEECCC
Q 008927          318 TDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN-------GRSYLGILDDFG  390 (548)
Q Consensus       318 sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~-------g~~~L~~~dl~~  390 (548)
                      ++.    ..|+++|+++++.+.+.....     ..   ...+.|+|   |++.|++.....       ....|+++|+++
T Consensus       397 ~~~----~~v~~~d~~tg~~~~~~~~~~-----~~---v~~~~~Sp---DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          397 NDR----FEIMTVDLETGKPTVIERSRE-----AM---ITDFTISD---NSRFIAYGFPLKHGETDGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             ETT----SEEEEEETTTCCEEEEEECSS-----SC---CCCEEECT---TSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             CCC----CeEEEEECCCCceEEeccCCC-----CC---ccceEECC---CCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence            654    279999999998877763210     10   12245665   888888776543       457899999999


Q ss_pred             CceEeecCCCceeE--eeeecCCEEEEEEe
Q 008927          391 HSLSLLDIPFTDID--NITLGNDCLFVEGA  418 (548)
Q Consensus       391 g~~~~l~~~~~~~~--~~s~d~~~l~~~~s  418 (548)
                      ++.+.++.......  .+++|++.|++...
T Consensus       462 g~~~~l~~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          462 RKIFAATTENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             TEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             CcEEEeeCCCcccCCceEcCCCCEEEEEec
Confidence            98777765433322  24789999888765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.57  E-value=6.6e-14  Score=152.26  Aligned_cols=233  Identities=15%  Similarity=0.093  Sum_probs=153.7

Q ss_pred             eeeEEECCEEEEEeCCCC--eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927          148 GAFRIFGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~~~--~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      -++++||++|+|.+..++  +||.+  ++  +++++||...   ......+.||||  +|+|++.....   .....||.
T Consensus        27 ~~~~~DG~~la~~s~~~g~~~lw~~--~~--g~~~~lt~~~---~~~~~~~~~spd--~~l~~~~~~~g---~~~~~l~~   94 (582)
T 3o4h_A           27 LQGVVDGDKLLVVGFSEGSVNAYLY--DG--GETVKLNREP---INSVLDPHYGVG--RVILVRDVSKG---AEQHALFK   94 (582)
T ss_dssp             EEEEETTTEEEEEEEETTEEEEEEE--ET--TEEEECCSSC---CSEECEECTTCS--EEEEEEECSTT---SCCEEEEE
T ss_pred             eecCCCCCeEEEEEccCCceeEEEE--cC--CCcEeeeccc---ccccccccCCCC--eEEEEeccCCC---CcceEEEE
Confidence            368899999999986554  68876  55  7889998762   134667899999  67787653111   13468999


Q ss_pred             EEC--CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCC
Q 008927          226 IAL--NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (548)
Q Consensus       226 idl--~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~  303 (548)
                      +++  .++.    ..++..... ....|||||+.++|++...       ..+.+.++++ |+   .+.+....    .  
T Consensus        95 ~~~~~~g~~----~~l~~~~~~-~~~~~s~dg~~~~~~s~~~-------~~~~l~d~~~-g~---~~~l~~~~----~--  152 (582)
T 3o4h_A           95 VNTSRPGEE----QRLEAVKPM-RILSGVDTGEAVVFTGATE-------DRVALYALDG-GG---LRELARLP----G--  152 (582)
T ss_dssp             EETTSTTCC----EECTTSCSB-EEEEEEECSSCEEEEEECS-------SCEEEEEEET-TE---EEEEEEES----S--
T ss_pred             EeccCCCcc----ccccCCCCc-eeeeeCCCCCeEEEEecCC-------CCceEEEccC-Cc---EEEeecCC----C--
Confidence            999  6554    466544433 3568999999999887432       1233558874 54   33344322    2  


Q ss_pred             cCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEE
Q 008927          304 TEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY  382 (548)
Q Consensus       304 ~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~  382 (548)
                      ..+.|||||+ |++.++...+...||++|+++++.+.|+.......         ...|+|   |++.|+ ....++..+
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~---------~~~~Sp---DG~~l~-~~~~~~~~~  219 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFS---------SASISP---GMKVTA-GLETAREAR  219 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEE---------EEEECT---TSCEEE-EEECSSCEE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccc---------cceECC---CCCEEE-EccCCCeeE
Confidence            6789999999 77776553555779999999999888874322111         244555   788777 666677789


Q ss_pred             EEEEECCCCceEeecCCCceeE--e--------eeecCCEEEEEEecCCCCCeEEEEEc
Q 008927          383 LGILDDFGHSLSLLDIPFTDID--N--------ITLGNDCLFVEGASGVEPSSVAKVTL  431 (548)
Q Consensus       383 L~~~dl~~g~~~~l~~~~~~~~--~--------~s~d~~~l~~~~ss~~~p~~l~~~d~  431 (548)
                      |+++|+++++.+.++.....+.  .        +++|+ .+++..+..   ..+.++++
T Consensus       220 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~---g~~~l~~~  274 (582)
T 3o4h_A          220 LVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARRE---GRSAVFID  274 (582)
T ss_dssp             EEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEET---TEEEEEET
T ss_pred             EEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCC-cEEEEEEcC---CcEEEEEE
Confidence            9999999998873332221111  1        57788 677776543   24445554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.54  E-value=9.5e-13  Score=146.38  Aligned_cols=285  Identities=10%  Similarity=0.046  Sum_probs=180.0

Q ss_pred             CCCCcCCHHHHhcC-CCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeE
Q 008927           74 SWKSPLTADVVSGA-SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFR  151 (548)
Q Consensus        74 ~w~spit~~~l~~~-~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~  151 (548)
                      .|.--|.++.+... ...+..+.+|| |++++|...+.. .....|+.++..+ ++..+.+-.  .+     .+++.+|+
T Consensus       113 ~~~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G-~~~~~i~v~dl~t-g~~~~~~~~--~~-----k~~~~~Ws  183 (693)
T 3iuj_A          113 PAEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAG-SDWREIHLMDVES-KQPLETPLK--DV-----KFSGISWL  183 (693)
T ss_dssp             CCEEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSS-CCEEEEEEEETTT-CSEEEEEEE--EE-----ESCCCEEE
T ss_pred             CcEEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCC-CceEEEEEEECCC-CCCCccccC--Cc-----eeccEEEe
Confidence            35444555555443 13577889999 999999876521 2247888887663 344333211  01     13456899


Q ss_pred             EECCEEEEEeCCC------------CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCc
Q 008927          152 IFGDTVIFSNYKD------------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNS  219 (548)
Q Consensus       152 ~~~~~i~F~~~~~------------~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~  219 (548)
                       |++.|+|+...+            .+||+.++.++..+.+.|..........+..+.|||||++|++......     .
T Consensus       184 -Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-----~  257 (693)
T 3iuj_A          184 -GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST-----S  257 (693)
T ss_dssp             -TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS-----S
T ss_pred             -CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC-----C
Confidence             999999997542            3699999876222345565442000123556789999999988754432     2


Q ss_pred             eeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCc
Q 008927          220 TTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI  299 (548)
Q Consensus       220 ~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~  299 (548)
                      .++||++|+++++ .+.+.|+...+....+ |++||++|+|++....    ...+|++++++. +.....+.+....   
T Consensus       258 ~~~i~~~d~~~~~-~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~----~~~~l~~~d~~~-~~~~~~~~l~~~~---  327 (693)
T 3iuj_A          258 GNRLYVKDLSQEN-APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDA----PNRRLVTVDAAN-PGPAHWRDLIPER---  327 (693)
T ss_dssp             CCEEEEEETTSTT-CCCEEEECSSSSCEEE-EEEETTEEEEEECTTC----TTCEEEEEETTS-CCGGGCEEEECCC---
T ss_pred             CcEEEEEECCCCC-CceEEEeCCCCceEEE-EeccCCEEEEEECCCC----CCCEEEEEeCCC-CCccccEEEecCC---
Confidence            3689999998873 1167777655544444 8899999998874321    257899999985 3321223444433   


Q ss_pred             ccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEe-
Q 008927          300 VESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ-  377 (548)
Q Consensus       300 ~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~-  377 (548)
                       ..+.  .|+++|+ |++...+ .+...|++++++++..+.|....     ...+.   .+.+.+   +++.|++.+.. 
T Consensus       328 -~~~~--~~s~~g~~lv~~~~~-~g~~~l~~~d~~g~~~~~l~~p~-----~~~~~---~~~~~~---d~~~l~~~~ss~  392 (693)
T 3iuj_A          328 -QQVL--TVHSGSGYLFAEYMV-DATARVEQFDYEGKRVREVALPG-----LGSVS---GFNGKH---DDPALYFGFENY  392 (693)
T ss_dssp             -SSCE--EEEEETTEEEEEEEE-TTEEEEEEECTTSCEEEEECCSS-----SSEEE---ECCCCT---TCSCEEEEEECS
T ss_pred             -CCEE--EEEEECCEEEEEEEE-CCeeEEEEEECCCCeeEEeecCC-----CceEE---eeecCC---CCCEEEEEecCC
Confidence             2232  8999999 7777766 78889999999877776664211     11111   112222   67778877653 


Q ss_pred             CCeEEEEEEECCCCceEeecC
Q 008927          378 NGRSYLGILDDFGHSLSLLDI  398 (548)
Q Consensus       378 ~g~~~L~~~dl~~g~~~~l~~  398 (548)
                      .....||.+|+++++.+.|..
T Consensus       393 ~tP~~l~~~d~~~g~~~~l~~  413 (693)
T 3iuj_A          393 AQPPTLYRFEPKSGAISLYRA  413 (693)
T ss_dssp             SSCCEEEEECTTTCCEEEEEC
T ss_pred             CCCCEEEEEECCCCeEEEEEe
Confidence            344689999999988777653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=99.54  E-value=1.1e-12  Score=147.23  Aligned_cols=249  Identities=7%  Similarity=-0.004  Sum_probs=158.7

Q ss_pred             EEECCEEEEEeCCCC----eEEEEeC---CCCCC--CceecCCCC---CCCC-ceecceeeC-CCCCEEEEEEeccCCCC
Q 008927          151 RIFGDTVIFSNYKDQ----RLYKHSI---DSKDS--SPLPITPDY---GEPL-VSYADGIFD-PRFNRYVTVREDRRQDA  216 (548)
Q Consensus       151 ~~~~~~i~F~~~~~~----~Ly~~~~---~~~~~--~~~~lT~~~---~~~~-~~~~~~~~S-pDG~~i~~v~~~~~~~~  216 (548)
                      .++|+++||+....+    .||+.+.   ++  +  +.+.|....   ++.. .....+.|| |||++|+|+......  
T Consensus       123 ~~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~--~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~--  198 (751)
T 2xe4_A          123 YVYGKYRYYTREVKGKPYKIYCRVFTDKEPG--DVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGN--  198 (751)
T ss_dssp             EEETTEEEEEEECTTCCSCEEEEEETTSCTT--CTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSS--
T ss_pred             eEECCEEEEEEECCCCceeEEEEEcCCCCCC--CCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCC--
Confidence            368999999865432    4888886   44  4  444443210   0011 256678999 999999998654321  


Q ss_pred             CCceeEEEEEECCCC-CccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEE-cC
Q 008927          217 LNSTTEIVAIALNGQ-NIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-AG  294 (548)
Q Consensus       217 ~~~~~~l~~idl~~g-~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l-~~  294 (548)
                        ....||++|+++| +.. ...+..   ....+.|||||++|+|+..+...   ...+||+.++.+ +.. +.+++ ..
T Consensus       199 --~~~~l~v~dl~~g~~~l-~~~~~~---~~~~~~WspDg~~l~y~~~d~~~---~~~~v~~~~lgt-~~~-~~~lv~~~  267 (751)
T 2xe4_A          199 --EVYTIEFKRISDPSQTI-ADKVSG---TNGEIVWGPDHTSLFYVTKDETL---RENKVWRHVMGK-LQS-EDVCLYEE  267 (751)
T ss_dssp             --SCEEEEEEETTCTTCCC-CCCEEE---ECSCCEECSSTTEEEEEEECTTC---CEEEEEEEETTS-CGG-GCEEEEEC
T ss_pred             --ceEEEEEEECCCCCEeC-CccccC---ceeeEEEecCCCEEEEEEECCCC---CCCEEEEEECCC-Cch-hcEEEEec
Confidence              2468999999998 510 111221   24578999999999999854321   235899999874 321 12333 22


Q ss_pred             CCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCC--ee--EeecccccccCCCcccccCcceeeeeecCCCC
Q 008927          295 FDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN--EV--LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKN  369 (548)
Q Consensus       295 ~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g--~~--~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~  369 (548)
                      .+ .  .....+.|||||+ |++.+.. .+..+||++|++++  +.  +.|++..   ..+.|..     .|.    +++
T Consensus       268 ~~-~--~~~~~~~~SpDg~~l~~~~~~-~~~~~l~~~d~~~~~~~~~~~~l~~~~---~~~~~s~-----~~~----~g~  331 (751)
T 2xe4_A          268 HN-P--LFSAFMYKAADTNTLCIGSQS-PETAEVHLLDLRKGNAHNTLEIVRPRE---KGVRYDV-----QMH----GTS  331 (751)
T ss_dssp             CC-T--TCEEEEEECTTSSEEEEEEEC-SSCEEEEEEESSSCTTCCCEEESSCCC---TTCCEEE-----EEE----TTT
T ss_pred             CC-C--ceEEEEEECCCCCEEEEEecC-CCCceEEEEECCCCCCCceeEEeecCC---CCceEEE-----eee----eCC
Confidence            22 1  2345689999999 8887765 56778999999876  44  5565421   1223321     111    588


Q ss_pred             EEEEEEEeC--CeEEEEEEECCC-CceEe-ec-CCCc-eeEeeeecCCEEEEEEecCCCCCeEEEEEc
Q 008927          370 LIACSYRQN--GRSYLGILDDFG-HSLSL-LD-IPFT-DIDNITLGNDCLFVEGASGVEPSSVAKVTL  431 (548)
Q Consensus       370 ~l~~~~~~~--g~~~L~~~dl~~-g~~~~-l~-~~~~-~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~  431 (548)
                      .|++..+.+  +..+|+++|+++ ++++. |. .... .+..++..++.|++.... .....|+++++
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~-~g~~~l~~~dl  398 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRR-AGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEE-TTEEEEEEEEC
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEe-CCEEEEEEEec
Confidence            999988865  678999999876 45555 43 3222 355666678888877654 44578999996

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.52  E-value=2.1e-11  Score=122.66  Aligned_cols=282  Identities=13%  Similarity=0.059  Sum_probs=162.7

Q ss_pred             CccCceEEcC-CCcEEEEEecCCC-CCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCe
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTE-AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR  166 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e-~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~  166 (548)
                      ..+..+.++| |+++|.......+ .....|+.++..+ ++.....+.....       .+..|+++++.|++....++.
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~~-------~~~~~s~dg~~l~v~~~~~~~  112 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT-LEVTQAIHNDLKP-------FGATINNTTQTLWFGNTVNSA  112 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT-CCEEEEEEESSCC-------CSEEEETTTTEEEEEETTTTE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC-CeEEEEEecCCCc-------ceEEECCCCCEEEEEecCCCE
Confidence            3456789999 7788666532110 0134566666542 2333322211111       134678888889998877889


Q ss_pred             EEEEeCCCCCCCc-eecCCCCCC-----CCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee
Q 008927          167 LYKHSIDSKDSSP-LPITPDYGE-----PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV  240 (548)
Q Consensus       167 Ly~~~~~~~~~~~-~~lT~~~~~-----~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~  240 (548)
                      |+++++.+  ++. ..+......     .......+.|+|||++|++.....       ...|+++|+++++   .....
T Consensus       113 v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-------~~~i~~~d~~~~~---~~~~~  180 (353)
T 3vgz_A          113 VTAIDAKT--GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-------ESVIWVVDGGNIK---LKTAI  180 (353)
T ss_dssp             EEEEETTT--CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-------SCEEEEEETTTTE---EEEEE
T ss_pred             EEEEeCCC--CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-------CceEEEEcCCCCc---eEEEe
Confidence            99999987  554 333221100     001134578999999876653221       2479999999887   44333


Q ss_pred             e-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEe
Q 008927          241 S-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD  319 (548)
Q Consensus       241 ~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd  319 (548)
                      . .........|||||++|+... .       ..+|+++|+.. ++.  ...+...............|+|||+.+|+++
T Consensus       181 ~~~~~~~~~~~~s~dg~~l~~~~-~-------~~~i~~~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  249 (353)
T 3vgz_A          181 QNTGKMSTGLALDSEGKRLYTTN-A-------DGELITIDTAD-NKI--LSRKKLLDDGKEHFFINISLDTARQRAFITD  249 (353)
T ss_dssp             CCCCTTCCCCEEETTTTEEEEEC-T-------TSEEEEEETTT-TEE--EEEEECCCSSSCCCEEEEEEETTTTEEEEEE
T ss_pred             cCCCCccceEEECCCCCEEEEEc-C-------CCeEEEEECCC-CeE--EEEEEcCCCCCCcccceEEECCCCCEEEEEe
Confidence            3 222345678999999886443 1       35799999874 542  2222211100002234578999999445555


Q ss_pred             CCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eecC
Q 008927          320 RKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDI  398 (548)
Q Consensus       320 ~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~~  398 (548)
                      .  +...|+.+|+++++.....+.    ..+      ....+.|   +++.+++....+  ..|.++|+++++.. .+..
T Consensus       250 ~--~~~~v~~~d~~~~~~~~~~~~----~~~------~~~~~s~---dg~~l~v~~~~~--~~v~~~d~~~~~~~~~~~~  312 (353)
T 3vgz_A          250 S--KAAEVLVVDTRNGNILAKVAA----PES------LAVLFNP---ARNEAYVTHRQA--GKVSVIDAKSYKVVKTFDT  312 (353)
T ss_dssp             S--SSSEEEEEETTTCCEEEEEEC----SSC------CCEEEET---TTTEEEEEETTT--TEEEEEETTTTEEEEEEEC
T ss_pred             C--CCCEEEEEECCCCcEEEEEEc----CCC------ceEEECC---CCCEEEEEECCC--CeEEEEECCCCeEEEEEec
Confidence            4  224688999988876543321    111      1244554   777776654233  46888999888754 3333


Q ss_pred             CCceeEe--eeecCCEEEEEEec
Q 008927          399 PFTDIDN--ITLGNDCLFVEGAS  419 (548)
Q Consensus       399 ~~~~~~~--~s~d~~~l~~~~ss  419 (548)
                      +. ....  ++++++.+++....
T Consensus       313 ~~-~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          313 PT-HPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             CS-EEEEEEECTTSCEEEEEEEC
T ss_pred             CC-CCCeEEEcCCCCEEEEEEcc
Confidence            32 2232  36788888776655

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.46  E-value=3.3e-11  Score=120.34  Aligned_cols=242  Identities=11%  Similarity=0.068  Sum_probs=147.0

Q ss_pred             eeeEEECCEEEEEeCCCCeEEEEeCCCCCCCc--eecCCCCCCCCceecc-eeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 008927          148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP--LPITPDYGEPLVSYAD-GIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~--~~lT~~~~~~~~~~~~-~~~SpDG~~i~~v~~~~~~~~~~~~~~l~  224 (548)
                      ..|+++++.|++....++.|+++++.+  ++.  +.++..     ..... +.|+|||+.|+ +.....     ....|+
T Consensus        45 ~~~s~dg~~l~~~~~~~~~i~~~d~~~--~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~-~~~~~~-----~~~~i~  111 (331)
T 3u4y_A           45 TAITSDCSNVVVTSDFCQTLVQIETQL--EPPKVVAIQEG-----QSSMADVDITPDDQFAV-TVTGLN-----HPFNMQ  111 (331)
T ss_dssp             EEECSSSCEEEEEESTTCEEEEEECSS--SSCEEEEEEEC-----SSCCCCEEECTTSSEEE-ECCCSS-----SSCEEE
T ss_pred             EEEcCCCCEEEEEeCCCCeEEEEECCC--CceeEEecccC-----CCCccceEECCCCCEEE-EecCCC-----CcccEE
Confidence            467778888888887788999999987  553  334333     12234 78999999987 422211     123899


Q ss_pred             EEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeee--EEEcCCCCCcccC
Q 008927          225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR--VCVAGFDPTIVES  302 (548)
Q Consensus       225 ~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~--~~l~~~~~~~~~~  302 (548)
                      ++|+++++   ...............|||||++|+.....      +...|++++++.+|.+...  ..+...     ..
T Consensus       112 v~d~~~~~---~~~~~~~~~~~~~~~~spdg~~l~~~~~~------~~~~i~~~~~~~~g~~~~~~~~~~~~~-----~~  177 (331)
T 3u4y_A          112 SYSFLKNK---FISTIPIPYDAVGIAISPNGNGLILIDRS------SANTVRRFKIDADGVLFDTGQEFISGG-----TR  177 (331)
T ss_dssp             EEETTTTE---EEEEEECCTTEEEEEECTTSSCEEEEEET------TTTEEEEEEECTTCCEEEEEEEEECSS-----SS
T ss_pred             EEECCCCC---eEEEEECCCCccceEECCCCCEEEEEecC------CCceEEEEEECCCCcEeecCCccccCC-----CC
Confidence            99999887   44443333334678999999987655422      1233888888765543221  222221     33


Q ss_pred             CcCceECcCCcEEEEEeCCCCeeeEEEEeccCCee---EeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC
Q 008927          303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (548)
Q Consensus       303 ~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~---~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g  379 (548)
                      ...+.|+|||+.+|+++...+  .|+++|+++++.   ....+..   ..      .....+.|   +++.|++..  .+
T Consensus       178 ~~~~~~spdg~~l~v~~~~~~--~v~v~d~~~~~~~~~~~~~~~~---~~------~~~~~~sp---dg~~l~v~~--~~  241 (331)
T 3u4y_A          178 PFNITFTPDGNFAFVANLIGN--SIGILETQNPENITLLNAVGTN---NL------PGTIVVSR---DGSTVYVLT--ES  241 (331)
T ss_dssp             EEEEEECTTSSEEEEEETTTT--EEEEEECSSTTSCEEEEEEECS---SC------CCCEEECT---TSSEEEEEC--SS
T ss_pred             ccceEECCCCCEEEEEeCCCC--eEEEEECCCCcccceeeeccCC---CC------CceEEECC---CCCEEEEEE--cC
Confidence            567899999994444443133  577888877775   2222211   11      12245654   777776543  34


Q ss_pred             eEEEEEEECCCCceEeecC---C----Cc-ee----EeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          380 RSYLGILDDFGHSLSLLDI---P----FT-DI----DNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       380 ~~~L~~~dl~~g~~~~l~~---~----~~-~~----~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      ...|+++|+++++++.+..   .    .. ..    -.+++|++.+++....   ...|.++|+++..
T Consensus       242 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~---~~~v~v~d~~~~~  306 (331)
T 3u4y_A          242 TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI---SRELKVFTISGKV  306 (331)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT---TTEEEEEETTSCE
T ss_pred             CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC---CCcEEEEEecCCc
Confidence            5668999999988744321   1    01 11    1347888887765532   3578889987654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.46  E-value=5.5e-11  Score=120.69  Aligned_cols=276  Identities=10%  Similarity=0.028  Sum_probs=151.6

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L  167 (548)
                      .....+.++| |+.+|.......+.|+..+|.++.++ +..+.+.........      ...++++++.|+..+..++.|
T Consensus        50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~-g~~~~~~~~~~~~~~------p~~~~~dg~~l~~~~~~~~~v  122 (361)
T 3scy_A           50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK-GTLHLLNTQKTMGAD------PCYLTTNGKNIVTANYSGGSI  122 (361)
T ss_dssp             SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT-TEEEEEEEEECSSSC------EEEEEECSSEEEEEETTTTEE
T ss_pred             CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC-CcEEEeeEeccCCCC------cEEEEECCCEEEEEECCCCEE
Confidence            4566789999 77787776432234677778776542 244444321100000      112445677788887777888


Q ss_pred             EEEeCCCCCCCceecCC-----CCCCC-----CceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCC----C-
Q 008927          168 YKHSIDSKDSSPLPITP-----DYGEP-----LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ----N-  232 (548)
Q Consensus       168 y~~~~~~~~~~~~~lT~-----~~~~~-----~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g----~-  232 (548)
                      .+++++.+ +....+..     .....     ......+.|+|||++|++.....      ..-.+|.++..++    + 
T Consensus       123 ~~~~~~~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~------~~v~v~~~~~~~~~~~~~~  195 (361)
T 3scy_A          123 TVFPIGQD-GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT------DQIHKFNINPNANADNKEK  195 (361)
T ss_dssp             EEEEBCTT-SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT------TEEEEEEECTTCCTTTCCC
T ss_pred             EEEEeCCC-CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC------CEEEEEEEcCCCCcccccc
Confidence            88887642 33322211     00000     01123478999999877653211      1234444444443    1 


Q ss_pred             ccC---cEEee-ecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          233 IQE---PKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       233 ~~~---~~~L~-~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      ...   ...+. ..........|||||++|+... .      ....|++++++ +|++.....+...... ......+.|
T Consensus       196 l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~-~------~~~~v~v~~~~-~g~~~~~~~~~~~~~~-~~~~~~i~~  266 (361)
T 3scy_A          196 FLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLIN-E------IGGTVIAFRYA-DGMLDEIQTVAADTVN-AQGSGDIHL  266 (361)
T ss_dssp             CEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE-T------TTCEEEEEEEE-TTEEEEEEEEESCSSC-CCCEEEEEE
T ss_pred             eeecccccceecCCCCCCeEEEEcCCCCEEEEEc-C------CCCeEEEEEec-CCceEEeEEEecCCCC-CCCcccEEE
Confidence            000   01122 1122245678999999876544 2      13578999988 4654333333221100 022347889


Q ss_pred             CcCCcEEEEEeCC-CCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927          309 SSKGELFFVTDRK-NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (548)
Q Consensus       309 spDG~L~~~sd~~-~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d  387 (548)
                      +|||+.+|++++. .+.-.+|.++.++++.+.+..... -..|      ..+.++|   +++.|++....++.-.+|.+|
T Consensus       267 spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~------~~~~~sp---dg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          267 SPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHP------RNFIITP---NGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCC------CEEEECT---TSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCC------ceEEECC---CCCEEEEEECCCCCEEEEEEE
Confidence            9999966666663 466667777766777655532111 0111      2355665   777777655456778888899


Q ss_pred             CCCCceEeec
Q 008927          388 DFGHSLSLLD  397 (548)
Q Consensus       388 l~~g~~~~l~  397 (548)
                      +++|+++.+.
T Consensus       337 ~~~g~~~~~~  346 (361)
T 3scy_A          337 QATGLLTDIK  346 (361)
T ss_dssp             TTTCCEEECS
T ss_pred             CCCCcEeecc
Confidence            9999887664

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.41  E-value=8e-11  Score=120.46  Aligned_cols=237  Identities=11%  Similarity=0.051  Sum_probs=153.0

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      .|+++++.|+++...++.|+++++..  ++.......    ......+.|+|||+.|++...+        ...|+++|+
T Consensus        38 ~~s~dg~~l~~~~~~d~~i~v~d~~~--~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~~--------~~~v~v~d~  103 (391)
T 1l0q_A           38 VISPDGTKVYVANAHSNDVSIIDTAT--NNVIATVPA----GSSPQGVAVSPDGKQVYVTNMA--------SSTLSVIDT  103 (391)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEETTT--TEEEEEEEC----SSSEEEEEECTTSSEEEEEETT--------TTEEEEEET
T ss_pred             EECCCCCEEEEECCCCCeEEEEECCC--CeEEEEEEC----CCCccceEECCCCCEEEEEECC--------CCEEEEEEC
Confidence            57778888888877788999999976  544433222    1245677899999988775322        147999999


Q ss_pred             CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      .+++   ...............|+|||++|++...       ....|++.|+.. ++.  ...+...     .....+.|
T Consensus       104 ~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~-------~~~~v~~~d~~~-~~~--~~~~~~~-----~~~~~~~~  165 (391)
T 1l0q_A          104 TSNT---VAGTVKTGKSPLGLALSPDGKKLYVTNN-------GDKTVSVINTVT-KAV--INTVSVG-----RSPKGIAV  165 (391)
T ss_dssp             TTTE---EEEEEECSSSEEEEEECTTSSEEEEEET-------TTTEEEEEETTT-TEE--EEEEECC-----SSEEEEEE
T ss_pred             CCCe---EEEEEeCCCCcceEEECCCCCEEEEEeC-------CCCEEEEEECCC-CcE--EEEEecC-----CCcceEEE
Confidence            9987   5444444445567899999998876552       245799999874 542  2333332     23467889


Q ss_pred             CcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927          309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (548)
Q Consensus       309 spDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d  387 (548)
                      +|||+ |++.... ++  .|+.+|+.+++.........      .   .....+.|   +++.|++.........|+++|
T Consensus       166 ~~dg~~l~~~~~~-~~--~v~~~d~~~~~~~~~~~~~~------~---~~~~~~~~---~g~~l~~~~~~~~~~~v~~~d  230 (391)
T 1l0q_A          166 TPDGTKVYVANFD-SM--SISVIDTVTNSVIDTVKVEA------A---PSGIAVNP---EGTKAYVTNVDKYFNTVSMID  230 (391)
T ss_dssp             CTTSSEEEEEETT-TT--EEEEEETTTTEEEEEEECSS------E---EEEEEECT---TSSEEEEEEECSSCCEEEEEE
T ss_pred             CCCCCEEEEEeCC-CC--EEEEEECCCCeEEEEEecCC------C---ccceEECC---CCCEEEEEecCcCCCcEEEEE
Confidence            99999 5444433 33  58888988887654442211      1   11234554   677777665433456788999


Q ss_pred             CCCCceE-eecCCCceeEe--eeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          388 DFGHSLS-LLDIPFTDIDN--ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       388 l~~g~~~-~l~~~~~~~~~--~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      +.+++.. .+.... .+..  ++++++.+++..+.   ...|+++|+.+++.
T Consensus       231 ~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~---d~~v~v~d~~~~~~  278 (391)
T 1l0q_A          231 TGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSF---XNTVSVIDTATNTI  278 (391)
T ss_dssp             TTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEE
T ss_pred             CCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCC---CCEEEEEECCCCcE
Confidence            9888654 333322 2333  36788877766533   36799999987764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.39  E-value=1.8e-09  Score=108.29  Aligned_cols=243  Identities=10%  Similarity=0.062  Sum_probs=148.4

Q ss_pred             eeEEECCEEEEEeCC------CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 008927          149 AFRIFGDTVIFSNYK------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE  222 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~------~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~  222 (548)
                      +|+++++.|++.+..      ++.|+++++.+  ++.......    ......+.|+|||+.+++....        ...
T Consensus        47 ~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~--~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~--------~~~  112 (353)
T 3vgz_A           47 AYSQQENALWLATSQSRKLDKGGVVYRLDPVT--LEVTQAIHN----DLKPFGATINNTTQTLWFGNTV--------NSA  112 (353)
T ss_dssp             EEETTTTEEEEEECCCTTTEESEEEEEECTTT--CCEEEEEEE----SSCCCSEEEETTTTEEEEEETT--------TTE
T ss_pred             EECCCCCEEEEEcCCCcCCCCCccEEEEcCCC--CeEEEEEec----CCCcceEEECCCCCEEEEEecC--------CCE
Confidence            567778888877644      56899999987  554333222    1234567899999987665322        147


Q ss_pred             EEEEECCCCCccCcE-EeeecCC---------ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEE
Q 008927          223 IVAIALNGQNIQEPK-VLVSGSD---------FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV  292 (548)
Q Consensus       223 l~~idl~~g~~~~~~-~L~~~~~---------~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l  292 (548)
                      |+++|+++++   .. .+..+..         ......|||||++|+...+..      ...|+++|++. ++.  ...+
T Consensus       113 v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------~~~i~~~d~~~-~~~--~~~~  180 (353)
T 3vgz_A          113 VTAIDAKTGE---VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK------ESVIWVVDGGN-IKL--KTAI  180 (353)
T ss_dssp             EEEEETTTCC---EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS------SCEEEEEETTT-TEE--EEEE
T ss_pred             EEEEeCCCCe---eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC------CceEEEEcCCC-Cce--EEEe
Confidence            9999999987   43 3332211         134568999999876554321      35799999874 542  2334


Q ss_pred             cCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEE
Q 008927          293 AGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIA  372 (548)
Q Consensus       293 ~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~  372 (548)
                      ....    .....+.|+|||+.+|+++. .+  .|+.+|+.+++.......... +...+   .....+.|   +++.|+
T Consensus       181 ~~~~----~~~~~~~~s~dg~~l~~~~~-~~--~i~~~d~~~~~~~~~~~~~~~-~~~~~---~~~~~~s~---dg~~l~  246 (353)
T 3vgz_A          181 QNTG----KMSTGLALDSEGKRLYTTNA-DG--ELITIDTADNKILSRKKLLDD-GKEHF---FINISLDT---ARQRAF  246 (353)
T ss_dssp             CCCC----TTCCCCEEETTTTEEEEECT-TS--EEEEEETTTTEEEEEEECCCS-SSCCC---EEEEEEET---TTTEEE
T ss_pred             cCCC----CccceEEECCCCCEEEEEcC-CC--eEEEEECCCCeEEEEEEcCCC-CCCcc---cceEEECC---CCCEEE
Confidence            3221    34667899999995555554 33  688899988876543321100 00011   11234554   777776


Q ss_pred             EEEEeCCeEEEEEEECCCCceE-eecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          373 CSYRQNGRSYLGILDDFGHSLS-LLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       373 ~~~~~~g~~~L~~~dl~~g~~~-~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      +..  .+...|+++|+++++.. .+..+...--.++++++.+++....   ...|+++|+.+++.
T Consensus       247 ~~~--~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~---~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          247 ITD--SKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQ---AGKVSVIDAKSYKV  306 (353)
T ss_dssp             EEE--SSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETT---TTEEEEEETTTTEE
T ss_pred             EEe--CCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECC---CCeEEEEECCCCeE
Confidence            553  33457889999888754 3333322112337788877665432   36899999887763

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.34  E-value=1e-10  Score=117.94  Aligned_cols=256  Identities=11%  Similarity=0.099  Sum_probs=137.4

Q ss_pred             eeeEEECCEEEEEeCC--CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927          148 GAFRIFGDTVIFSNYK--DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~--~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      .+|+++|+ |++.+..  ++.|+++++++  ++.+.++.... .......+.|+|||+.|++.....        ..|.+
T Consensus        45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~--g~~~~~~~~~~-~~~~p~~~a~spdg~~l~~~~~~~--------~~v~v  112 (347)
T 3hfq_A           45 LALSAKDC-LYSVDKEDDEGGIAAWQIDG--QTAHKLNTVVA-PGTPPAYVAVDEARQLVYSANYHK--------GTAEV  112 (347)
T ss_dssp             EEECTTCE-EEEEEEETTEEEEEEEEEET--TEEEEEEEEEE-ESCCCSEEEEETTTTEEEEEETTT--------TEEEE
T ss_pred             EEEccCCe-EEEEEecCCCceEEEEEecC--CcEEEeeeeec-CCCCCEEEEECCCCCEEEEEeCCC--------CEEEE
Confidence            35677766 7777643  57899998876  55555543100 012345678999999877653221        34666


Q ss_pred             EECC-CCCccCcEEeee----cC--------CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEE
Q 008927          226 IALN-GQNIQEPKVLVS----GS--------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV  292 (548)
Q Consensus       226 idl~-~g~~~~~~~L~~----~~--------~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l  292 (548)
                      ++++ ++.   .+.+..    +.        .......|||||+ |+ +...      ....|++++++.+|++.....+
T Consensus       113 ~~~~~~g~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~-v~~~------~~~~v~~~~~~~~g~~~~~~~~  181 (347)
T 3hfq_A          113 MKIAADGA---LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LA-VIDL------GSDKVYVYNVSDAGQLSEQSVL  181 (347)
T ss_dssp             EEECTTSC---EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EE-EEET------TTTEEEEEEECTTSCEEEEEEE
T ss_pred             EEeCCCCC---eeecceeecCCCCCCccccCCCceEEEECCCCc-EE-EEeC------CCCEEEEEEECCCCcEEEeeeE
Confidence            6664 344   333321    11        1234578999999 54 4422      2357999999855654322222


Q ss_pred             cCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeeccc---ccccCCCcccccCcceeeeeecCCC
Q 008927          293 AGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSL---DAEFSRPLWVFGINSYEIIQSHGEK  368 (548)
Q Consensus       293 ~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~---~~d~~~p~w~~~~~~~~~~~~~~d~  368 (548)
                      .... .  .....+.|+|||+ ||+.... .+...+|.++..+++.+.+...   ...+....   ......++|   |+
T Consensus       182 ~~~~-g--~~p~~~~~spdg~~l~v~~~~-~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~i~~sp---dG  251 (347)
T 3hfq_A          182 TMEA-G--FGPRHLVFSPDGQYAFLAGEL-SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN---GAAAIRLSH---DG  251 (347)
T ss_dssp             ECCT-T--CCEEEEEECTTSSEEEEEETT-TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC---EEEEEEECT---TS
T ss_pred             EcCC-C--CCCceEEECCCCCEEEEEeCC-CCEEEEEEecCCCCceEEeeeeeecCCCCCCCC---cceeEEECC---CC
Confidence            2211 1  2344579999999 5554444 6666677776656765443211   11100001   112245654   77


Q ss_pred             CEEEEEEEeCCeEEEEEEECCCCceEeec---CCCceeEe--eeecCCEEEEEEecCCCCCeEEEEEcCCCceee
Q 008927          369 NLIACSYRQNGRSYLGILDDFGHSLSLLD---IPFTDIDN--ITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKA  438 (548)
Q Consensus       369 ~~l~~~~~~~g~~~L~~~dl~~g~~~~l~---~~~~~~~~--~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~  438 (548)
                      +.||++...++.-.+|.++. +|..+.+.   ........  +++|++.|++... ....-.+|.+|.++++++.
T Consensus       252 ~~l~v~~~~~~~v~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          252 HFLYVSNRGYNTLAVFAVTA-DGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ-NTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             CEEEEEEETTTEEEEEEECG-GGCEEEEEEEECSSSCCCEEEECTTSSEEEEEET-TTTEEEEEEECTTTCCEEE
T ss_pred             CEEEEEeCCCCEEEEEEECC-CCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc-CCCcEEEEEEeCCCCeEEe
Confidence            77876655455545554442 34444332   21112222  3778887765543 2333455666777777543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.30  E-value=3.2e-10  Score=112.82  Aligned_cols=246  Identities=11%  Similarity=-0.002  Sum_probs=146.1

Q ss_pred             eeeEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCC-CCceecceeeCCCCCEEEEEEeccCCCCCC---ceeE
Q 008927          148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGE-PLVSYADGIFDPRFNRYVTVREDRRQDALN---STTE  222 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~-~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~---~~~~  222 (548)
                      .+|+++++.|++....++.|+++++.+  ++.. .+...... .......+.|+|||+.|++........+..   ....
T Consensus        39 ~~~s~dg~~l~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~  116 (337)
T 1pby_B           39 PMVAPGGRIAYATVNKSESLVKIDLVT--GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR  116 (337)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTT--CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred             eEEcCCCCEEEEEeCCCCeEEEEECCC--CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCce
Confidence            467778888888887778999999986  5543 34322100 001345678999999887763211000000   1268


Q ss_pred             EEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccC
Q 008927          223 IVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES  302 (548)
Q Consensus       223 l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~  302 (548)
                      |+++|+.+++   ...............|||||++|++.  +        ..|++++++. ++.  ...+...     ..
T Consensus       117 i~v~d~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~--~--------~~i~~~d~~~-~~~--~~~~~~~-----~~  175 (337)
T 1pby_B          117 VALYDAETLS---RRKAFEAPRQITMLAWARDGSKLYGL--G--------RDLHVMDPEA-GTL--VEDKPIQ-----SW  175 (337)
T ss_dssp             EEEEETTTTE---EEEEEECCSSCCCEEECTTSSCEEEE--S--------SSEEEEETTT-TEE--EEEECST-----TT
T ss_pred             EEEEECCCCc---EEEEEeCCCCcceeEECCCCCEEEEe--C--------CeEEEEECCC-CcE--eeeeecc-----cc
Confidence            9999999886   44333333334566899999988754  1        3599999974 542  2233321     11


Q ss_pred             CcCceECcCCc-EEEEEeCCCCe---------------------eeEEEEeccCCeeEeecccccccCCCcccccCccee
Q 008927          303 PTEPKWSSKGE-LFFVTDRKNGF---------------------WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYE  360 (548)
Q Consensus       303 ~~~~~wspDG~-L~~~sd~~~g~---------------------~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~  360 (548)
                      .....|+|||+ +++.... .+.                     +.|+.+|+++++...+...... .      ......
T Consensus       176 ~~~~~~s~dg~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~------~~~~~~  247 (337)
T 1pby_B          176 EAETYAQPDVLAVWNQHES-SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD-V------FYFSTA  247 (337)
T ss_dssp             TTTTBCCCBCCCCCCCCTT-TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS-S------CEEEEE
T ss_pred             CCCceeCCCccEEeeeccC-CCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCC-C------ceeeEE
Confidence            23458999999 6544332 222                     1688999988876533211000 0      011244


Q ss_pred             eeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eecCCCcee-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          361 IIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       361 ~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~~~~~~~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      +.|   +++.|++.     ...|+++|+++++.. .+..+.... -.++++++.+++. .   ....|+++|+++++.
T Consensus       248 ~s~---dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~---~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          248 VNP---AKTRAFGA-----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG-G---ALGDLAAYDAETLEK  313 (337)
T ss_dssp             ECT---TSSEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE-S---BSSEEEEEETTTCCE
T ss_pred             ECC---CCCEEEEe-----CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEE-c---CCCcEEEEECcCCcE
Confidence            554   77777655     257899999888654 333322111 1236788877664 2   247899999987764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.29  E-value=6e-10  Score=111.13  Aligned_cols=259  Identities=11%  Similarity=0.055  Sum_probs=135.2

Q ss_pred             eeeEEECCEEEEEeCCCCeEEEEeCC--CCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927          148 GAFRIFGDTVIFSNYKDQRLYKHSID--SKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~~~~Ly~~~~~--~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      .+|+++++.|++....++.|.+++++  +  ++.+.+.....  ......+.|+|||+.|++.....        ..|.+
T Consensus        43 ~~~spdg~~l~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~--------~~i~~  110 (343)
T 1ri6_A           43 MVVSPDKRYLYVGVRPEFRVLAYRIAPDD--GALTFAAESAL--PGSLTHISTDHQGQFVFVGSYNA--------GNVSV  110 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTT--CCEEEEEEEEC--SSCCSEEEECTTSSEEEEEETTT--------TEEEE
T ss_pred             EEECCCCCEEEEeecCCCeEEEEEecCCC--Cceeecccccc--CCCCcEEEEcCCCCEEEEEecCC--------CeEEE
Confidence            46778888888888665767665554  4  55554432210  11345678999999877654321        35677


Q ss_pred             EECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeE--EEcCCCCCcccCC
Q 008927          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV--CVAGFDPTIVESP  303 (548)
Q Consensus       226 idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~--~l~~~~~~~~~~~  303 (548)
                      +|+..+...................|||||++|+.....       ...|++++++.++++....  .+.... .  ...
T Consensus       111 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~~~~-~--~~~  180 (343)
T 1ri6_A          111 TRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-------QDRICLFTVSDDGHLVAQDPAEVTTVE-G--AGP  180 (343)
T ss_dssp             EEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-------GTEEEEEEECTTSCEEEEEEEEEECST-T--CCE
T ss_pred             EECCCCccccccccccCCCCceEEEECCCCCEEEEecCC-------CCEEEEEEecCCCceeeecccccccCC-C--CCc
Confidence            777433210022222333335567899999988644311       3579999998546532222  222211 1  234


Q ss_pred             cCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecc---cccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC
Q 008927          304 TEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (548)
Q Consensus       304 ~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~---~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g  379 (548)
                      ..+.|+|||+ |++.... .+.-.+|.++..+++.+.+..   ....+....+.   ....+.|   +++.|++....++
T Consensus       181 ~~~~~~pdg~~l~~~~~~-~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~i~~s~---dg~~l~v~~~~~~  253 (343)
T 1ri6_A          181 RHMVFHPNEQYAYCVNEL-NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA---ADIHITP---DGRHLYACDRTAS  253 (343)
T ss_dssp             EEEEECTTSSEEEEEETT-TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCE---EEEEECT---TSSEEEEEETTTT
T ss_pred             ceEEECCCCCEEEEEeCC-CCEEEEEEecCCCCcEEEEeeccccCccccccCCc---cceEECC---CCCEEEEEecCCC
Confidence            5578999999 5554433 554444444434565432221   11111111111   1245654   7777765543445


Q ss_pred             eEEEEEEECCCCceEeec---CCCceeEe--eeecCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 008927          380 RSYLGILDDFGHSLSLLD---IPFTDIDN--ITLGNDCLFVEGASGVEPSSVAKVTLDDHKLK  437 (548)
Q Consensus       380 ~~~L~~~dl~~g~~~~l~---~~~~~~~~--~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~  437 (548)
                      .-.+|.++.++++.+.+.   .... ...  ++++++.+++... ....-.+|.+|.++++.+
T Consensus       254 ~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~-~~~~v~v~~~d~~~g~~~  314 (343)
T 1ri6_A          254 LITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQ-KSHHISVYEIVGEQGLLH  314 (343)
T ss_dssp             EEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECT-TTCEEEEEEEETTTTEEE
T ss_pred             EEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecC-CCCeEEEEEEcCCCceee
Confidence            444444433355555442   2221 322  3677777665442 233345566677777653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.28  E-value=1.9e-09  Score=107.43  Aligned_cols=243  Identities=10%  Similarity=-0.013  Sum_probs=140.5

Q ss_pred             eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (548)
Q Consensus       150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~  229 (548)
                      |..+++.++.+...++.|+++++.+  ++........   .... .+.|+|||+.|++....        ...|+++|+.
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~---~~~~-~~~~s~dg~~l~~~~~~--------~~~i~~~d~~   70 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDT--LEILNQITLG---YDFV-DTAITSDCSNVVVTSDF--------CQTLVQIETQ   70 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTT--CCEEEEEECC---CCEE-EEEECSSSCEEEEEEST--------TCEEEEEECS
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcc--cceeeeEEcc---CCcc-eEEEcCCCCEEEEEeCC--------CCeEEEEECC
Confidence            3345567777777778999999987  5554433321   1223 77899999987665432        1479999999


Q ss_pred             CCCccCc-EEeeecCCceee-eEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          230 GQNIQEP-KVLVSGSDFYAF-PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       230 ~g~~~~~-~~L~~~~~~~~~-p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      +++   . ............ ..|||||++|+ +.... +   ....|++++++. ++.  ...+...     .....+.
T Consensus        71 ~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~-~---~~~~i~v~d~~~-~~~--~~~~~~~-----~~~~~~~  134 (331)
T 3u4y_A           71 LEP---PKVVAIQEGQSSMADVDITPDDQFAV-TVTGL-N---HPFNMQSYSFLK-NKF--ISTIPIP-----YDAVGIA  134 (331)
T ss_dssp             SSS---CEEEEEEECSSCCCCEEECTTSSEEE-ECCCS-S---SSCEEEEEETTT-TEE--EEEEECC-----TTEEEEE
T ss_pred             CCc---eeEEecccCCCCccceEECCCCCEEE-EecCC-C---CcccEEEEECCC-CCe--EEEEECC-----CCccceE
Confidence            987   5 333333233344 78999999987 44211 0   012899999974 542  2233332     2346789


Q ss_pred             ECcCCc-EEEEEeCCCCe-eeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927          308 WSSKGE-LFFVTDRKNGF-WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (548)
Q Consensus       308 wspDG~-L~~~sd~~~g~-~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~  385 (548)
                      |+|||+ ||+.... .+. -.+|.++. ++............+.     +.....+.|   +++.|++....  ...|++
T Consensus       135 ~spdg~~l~~~~~~-~~~~i~~~~~~~-~g~~~~~~~~~~~~~~-----~~~~~~~sp---dg~~l~v~~~~--~~~v~v  202 (331)
T 3u4y_A          135 ISPNGNGLILIDRS-SANTVRRFKIDA-DGVLFDTGQEFISGGT-----RPFNITFTP---DGNFAFVANLI--GNSIGI  202 (331)
T ss_dssp             ECTTSSCEEEEEET-TTTEEEEEEECT-TCCEEEEEEEEECSSS-----SEEEEEECT---TSSEEEEEETT--TTEEEE
T ss_pred             ECCCCCEEEEEecC-CCceEEEEEECC-CCcEeecCCccccCCC-----CccceEECC---CCCEEEEEeCC--CCeEEE
Confidence            999999 5554433 444 55666553 2333211100000000     112345654   77777765433  346788


Q ss_pred             EECCCCce----EeecCCCceeE--eeeecCCEEEEEEecCCCCCeEEEEEcCCCceee
Q 008927          386 LDDFGHSL----SLLDIPFTDID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKA  438 (548)
Q Consensus       386 ~dl~~g~~----~~l~~~~~~~~--~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~  438 (548)
                      +|+++++.    ..+..+ ....  .+++|++.+++...   ....|+++|+++++.+.
T Consensus       203 ~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~---~~~~i~~~d~~~~~~~~  257 (331)
T 3u4y_A          203 LETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE---STVDVFNFNQLSGTLSF  257 (331)
T ss_dssp             EECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS---SEEEEEEEETTTTEEEE
T ss_pred             EECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc---CCCEEEEEECCCCceee
Confidence            89888874    333332 1222  23778887766543   23569999998887543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.27  E-value=1.5e-09  Score=110.97  Aligned_cols=231  Identities=12%  Similarity=0.100  Sum_probs=146.1

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccC
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~  235 (548)
                      .++.+...++.|++.+++.  ++........    .....+.|+|||+.|++....        ...|.++|+.+++   
T Consensus         3 ~l~vs~~~d~~v~v~d~~~--~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~--------d~~i~v~d~~~~~---   65 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTS--NKVTATIPVG----SNPMGAVISPDGTKVYVANAH--------SNDVSIIDTATNN---   65 (391)
T ss_dssp             EEEEEETTTTEEEEEETTT--TEEEEEEECS----SSEEEEEECTTSSEEEEEEGG--------GTEEEEEETTTTE---
T ss_pred             EEEEEcCCCCEEEEEECCC--CeEEEEeecC----CCcceEEECCCCCEEEEECCC--------CCeEEEEECCCCe---
Confidence            5666777788999999986  5443332221    234567899999988665322        1479999999987   


Q ss_pred             cEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-E
Q 008927          236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-L  314 (548)
Q Consensus       236 ~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L  314 (548)
                      ...............|||||++|++...       ....|++.|++. ++.  ...+...     ..+..+.|+|||+ |
T Consensus        66 ~~~~~~~~~~v~~~~~spdg~~l~~~~~-------~~~~v~v~d~~~-~~~--~~~~~~~-----~~~~~~~~s~dg~~l  130 (391)
T 1l0q_A           66 VIATVPAGSSPQGVAVSPDGKQVYVTNM-------ASSTLSVIDTTS-NTV--AGTVKTG-----KSPLGLALSPDGKKL  130 (391)
T ss_dssp             EEEEEECSSSEEEEEECTTSSEEEEEET-------TTTEEEEEETTT-TEE--EEEEECS-----SSEEEEEECTTSSEE
T ss_pred             EEEEEECCCCccceEECCCCCEEEEEEC-------CCCEEEEEECCC-CeE--EEEEeCC-----CCcceEEECCCCCEE
Confidence            5444444445667889999999876542       135799999984 542  2333332     3457789999999 5


Q ss_pred             EEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE
Q 008927          315 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS  394 (548)
Q Consensus       315 ~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~  394 (548)
                      ++.... .+  .|+.+|+.+++.........   .+      ....+.|   +++.|++....+  ..|+++|+.+++..
T Consensus       131 ~~~~~~-~~--~v~~~d~~~~~~~~~~~~~~---~~------~~~~~~~---dg~~l~~~~~~~--~~v~~~d~~~~~~~  193 (391)
T 1l0q_A          131 YVTNNG-DK--TVSVINTVTKAVINTVSVGR---SP------KGIAVTP---DGTKVYVANFDS--MSISVIDTVTNSVI  193 (391)
T ss_dssp             EEEETT-TT--EEEEEETTTTEEEEEEECCS---SE------EEEEECT---TSSEEEEEETTT--TEEEEEETTTTEEE
T ss_pred             EEEeCC-CC--EEEEEECCCCcEEEEEecCC---Cc------ceEEECC---CCCEEEEEeCCC--CEEEEEECCCCeEE
Confidence            555433 33  68888988887654442211   11      1244554   677776554333  45888899888655


Q ss_pred             eecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          395 LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       395 ~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      ........+..+  +++++.+++.... .....|+++|+.+++.
T Consensus       194 ~~~~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~v~~~d~~~~~~  236 (391)
T 1l0q_A          194 DTVKVEAAPSGIAVNPEGTKAYVTNVD-KYFNTVSMIDTGTNKI  236 (391)
T ss_dssp             EEEECSSEEEEEEECTTSSEEEEEEEC-SSCCEEEEEETTTTEE
T ss_pred             EEEecCCCccceEECCCCCEEEEEecC-cCCCcEEEEECCCCeE
Confidence            433222233333  6777777666542 2357899999887753

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.23  E-value=3.5e-09  Score=109.74  Aligned_cols=291  Identities=7%  Similarity=-0.022  Sum_probs=165.0

Q ss_pred             CccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCC-CCCc-cccceeeCCeeeEEECCEEEEEeCCCCe
Q 008927           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPK-EYAV-RTTAQEYGGGAFRIFGDTVIFSNYKDQR  166 (548)
Q Consensus        89 ~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~-~~~~-r~~v~~ygg~~~~~~~~~i~F~~~~~~~  166 (548)
                      ..+..+.++|++.+++....   ++...+|....   ++.....+. .+.. ...+.   ...|. .++.++++...++.
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~---~~~i~~~d~~~---g~~~~~~~~~~~~~~~~~v~---~~~~~-~~~~~~~s~~~d~~  192 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLE---DEGMDVLDINS---GQTVRLSPPEKYKKKLGFVE---TISIP-EHNELWVSQMQANA  192 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTT---SSSEEEEETTT---CCEEEECCCHHHHTTCCEEE---EEEEG-GGTEEEEEEGGGTE
T ss_pred             CCceEEEEeCCCeEEEEeCC---CCeEEEEECCC---CeEeeecCcccccccCCcee---EEEEc-CCCEEEEEECCCCE
Confidence            34557888986666665432   35555565432   244433221 0000 00110   11232 24577788777889


Q ss_pred             EEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCc
Q 008927          167 LYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF  245 (548)
Q Consensus       167 Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~  245 (548)
                      |++.++++  ++.. .+...    ......+.|+|||+.|++....        ...|+++|+.+++   ..........
T Consensus       193 v~~~d~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~--------~~~i~~~d~~~~~---~~~~~~~~~~  255 (433)
T 3bws_A          193 VHVFDLKT--LAYKATVDLT----GKWSKILLYDPIRDLVYCSNWI--------SEDISVIDRKTKL---EIRKTDKIGL  255 (433)
T ss_dssp             EEEEETTT--CCEEEEEECS----SSSEEEEEEETTTTEEEEEETT--------TTEEEEEETTTTE---EEEECCCCSE
T ss_pred             EEEEECCC--ceEEEEEcCC----CCCeeEEEEcCCCCEEEEEecC--------CCcEEEEECCCCc---EEEEecCCCC
Confidence            99999876  4443 33322    2235567899999987665322        1479999999886   4444334444


Q ss_pred             eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCe
Q 008927          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGF  324 (548)
Q Consensus       246 ~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~  324 (548)
                      .....|+|||++|+..........-....|++.++.. ++.  ...+.. .    ..+..+.|+|||+ +++.... ++ 
T Consensus       256 ~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~-~~~--~~~~~~-~----~~~~~~~~~~~g~~l~~~~~~-~~-  325 (433)
T 3bws_A          256 PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK-EKL--IDTIGP-P----GNKRHIVSGNTENKIYVSDMC-CS-  325 (433)
T ss_dssp             EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT-TEE--EEEEEE-E----ECEEEEEECSSTTEEEEEETT-TT-
T ss_pred             ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC-CcE--EeeccC-C----CCcceEEECCCCCEEEEEecC-CC-
Confidence            6677899999998866643321110245899999974 542  222211 1    2345689999998 6555443 44 


Q ss_pred             eeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC------------eEEEEEEECCCCc
Q 008927          325 WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG------------RSYLGILDDFGHS  392 (548)
Q Consensus       325 ~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g------------~~~L~~~dl~~g~  392 (548)
                       .|+++++.+++.....+....         .....+.|   +++.|++.....+            ...|+++|+++++
T Consensus       326 -~v~v~d~~~~~~~~~~~~~~~---------~~~~~~s~---dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~  392 (433)
T 3bws_A          326 -KIEVYDLKEKKVQKSIPVFDK---------PNTIALSP---DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT  392 (433)
T ss_dssp             -EEEEEETTTTEEEEEEECSSS---------EEEEEECT---TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred             -EEEEEECCCCcEEEEecCCCC---------CCeEEEcC---CCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence             677888888776544322111         11245554   6666765543322            1379999998887


Q ss_pred             eEeecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 008927          393 LSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLD  432 (548)
Q Consensus       393 ~~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~  432 (548)
                      ..........+..+  +++++.+++....   ...|++++++
T Consensus       393 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---d~~i~v~~~~  431 (433)
T 3bws_A          393 VKEFWEAGNQPTGLDVSPDNRYLVISDFL---DHQIRVYRRD  431 (433)
T ss_dssp             EEEEEECSSSEEEEEECTTSCEEEEEETT---TTEEEEEEET
T ss_pred             EEEEecCCCCCceEEEcCCCCEEEEEECC---CCeEEEEEec
Confidence            65433222234433  6777777654431   2567777654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.23  E-value=3.1e-09  Score=105.94  Aligned_cols=266  Identities=7%  Similarity=-0.018  Sum_probs=145.2

Q ss_pred             ccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEE
Q 008927           90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY  168 (548)
Q Consensus        90 ~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly  168 (548)
                      .+..+.++| |+.+|.....   .+...+|.++..+ +..+.+......  ...   ...+|+++++.|++....++.|+
T Consensus        39 ~~~~~~~spdg~~l~~~~~~---~~~v~~~~~~~~~-~~~~~~~~~~~~--~~~---~~~~~s~dg~~l~~~~~~~~~i~  109 (343)
T 1ri6_A           39 QVQPMVVSPDKRYLYVGVRP---EFRVLAYRIAPDD-GALTFAAESALP--GSL---THISTDHQGQFVFVGSYNAGNVS  109 (343)
T ss_dssp             CCCCEEECTTSSEEEEEETT---TTEEEEEEECTTT-CCEEEEEEEECS--SCC---SEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCceEEECCCCCEEEEeecC---CCeEEEEEecCCC-CceeeccccccC--CCC---cEEEEcCCCCEEEEEecCCCeEE
Confidence            456789999 7777776532   3666777775332 233333211000  011   12357778888888887777788


Q ss_pred             EEeCCCC-CCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCC-CCccCcEEe-----ee
Q 008927          169 KHSIDSK-DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQEPKVL-----VS  241 (548)
Q Consensus       169 ~~~~~~~-~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~-g~~~~~~~L-----~~  241 (548)
                      +++++.+ ..+.......    ......+.|+|||+.|+.....        ...|+++|+.+ ++   ...+     ..
T Consensus       110 ~~d~~~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~--------~~~v~~~d~~~~~~---~~~~~~~~~~~  174 (343)
T 1ri6_A          110 VTRLEDGLPVGVVDVVEG----LDGCHSANISPDNRTLWVPALK--------QDRICLFTVSDDGH---LVAQDPAEVTT  174 (343)
T ss_dssp             EEEEETTEEEEEEEEECC----CTTBCCCEECTTSSEEEEEEGG--------GTEEEEEEECTTSC---EEEEEEEEEEC
T ss_pred             EEECCCCccccccccccC----CCCceEEEECCCCCEEEEecCC--------CCEEEEEEecCCCc---eeeeccccccc
Confidence            7777320 0122222222    1235567899999987654312        13688888887 65   4322     21


Q ss_pred             c-CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC-CCceeeeEEEcCCCCC--cccCCcCceECcCCcEEEE
Q 008927          242 G-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPT--IVESPTEPKWSSKGELFFV  317 (548)
Q Consensus       242 ~-~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~-~g~~~~~~~l~~~~~~--~~~~~~~~~wspDG~L~~~  317 (548)
                      . ........|+|||++|++...       ....|.+++++. .|++.....+......  .......+.|+|||+.+|+
T Consensus       175 ~~~~~~~~~~~~pdg~~l~~~~~-------~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v  247 (343)
T 1ri6_A          175 VEGAGPRHMVFHPNEQYAYCVNE-------LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA  247 (343)
T ss_dssp             STTCCEEEEEECTTSSEEEEEET-------TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE
T ss_pred             CCCCCcceEEECCCCCEEEEEeC-------CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEE
Confidence            1 123445689999998875541       135788889853 3443222222211100  0012235889999994455


Q ss_pred             EeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEee
Q 008927          318 TDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL  396 (548)
Q Consensus       318 sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l  396 (548)
                      +....+.-.+|.++.++++.+.+...... ..      ...+.+.|   +++.|++....++.-.+|.+|.++|+++.+
T Consensus       248 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~~------~~~~~~s~---dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~  316 (343)
T 1ri6_A          248 CDRTASLITVFSVSEDGSVLSKEGFQPTE-TQ------PRGFNVDH---SGKYLIAAGQKSHHISVYEIVGEQGLLHEK  316 (343)
T ss_dssp             EETTTTEEEEEEECTTSCCEEEEEEEECS-SS------CCCEEECT---TSSEEEEECTTTCEEEEEEEETTTTEEEEE
T ss_pred             EecCCCEEEEEEEcCCCCceEEeeeecCC-Cc------cceEEECC---CCCEEEEecCCCCeEEEEEEcCCCceeeEc
Confidence            54435544444444335554444211100 01      12245654   677777655456777888889888876654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.22  E-value=9.1e-10  Score=110.85  Aligned_cols=226  Identities=10%  Similarity=-0.037  Sum_probs=126.4

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCC---CC--CCccccceeeCCeeeEEECCEEEEEeC
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITP---KE--YAVRTTAQEYGGGAFRIFGDTVIFSNY  162 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~---~~--~~~r~~v~~ygg~~~~~~~~~i~F~~~  162 (548)
                      ..+..+.++| |+.+|....   .++...+|..+.+  +..+.+..   ..  ...|.....-....|+|+|+ |+....
T Consensus        86 ~~p~~~a~spdg~~l~~~~~---~~~~v~v~~~~~~--g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~  159 (347)
T 3hfq_A           86 TPPAYVAVDEARQLVYSANY---HKGTAEVMKIAAD--GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL  159 (347)
T ss_dssp             CCCSEEEEETTTTEEEEEET---TTTEEEEEEECTT--SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET
T ss_pred             CCCEEEEECCCCCEEEEEeC---CCCEEEEEEeCCC--CCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC
Confidence            4567789999 766766542   2466677776544  23333221   00  00000000000135777787 777776


Q ss_pred             CCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee-
Q 008927          163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-  241 (548)
Q Consensus       163 ~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~-  241 (548)
                      .++.|++++++.. ++...+.............+.|+|||+.|++..+..      ..-.+|.++..+++   .+.+.. 
T Consensus       160 ~~~~v~~~~~~~~-g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~------~~v~v~~~~~~~g~---~~~~~~~  229 (347)
T 3hfq_A          160 GSDKVYVYNVSDA-GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS------SQIASLKYDTQTGA---FTQLGIV  229 (347)
T ss_dssp             TTTEEEEEEECTT-SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT------TEEEEEEEETTTTE---EEEEEEE
T ss_pred             CCCEEEEEEECCC-CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC------CEEEEEEecCCCCc---eEEeeee
Confidence            6778888887621 444433210000011233578999999876653321      12345555554565   333321 


Q ss_pred             --cC------CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc
Q 008927          242 --GS------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (548)
Q Consensus       242 --~~------~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~  313 (548)
                        ..      .......|||||++|+.....       ...|.+++++.+|.+.....+....    .....+.|+|||+
T Consensus       230 ~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~-------~~~v~v~~~~~~g~~~~~~~~~~~~----~~~~~~~~spdg~  298 (347)
T 3hfq_A          230 KTIPADYTAHNGAAAIRLSHDGHFLYVSNRG-------YNTLAVFAVTADGHLTLIQQISTEG----DFPRDFDLDPTEA  298 (347)
T ss_dssp             ESSCTTCCSCCEEEEEEECTTSCEEEEEEET-------TTEEEEEEECGGGCEEEEEEEECSS----SCCCEEEECTTSS
T ss_pred             eecCCCCCCCCcceeEEECCCCCEEEEEeCC-------CCEEEEEEECCCCcEEEeEEEecCC----CCcCeEEECCCCC
Confidence              11      124567899999988654421       3578888887445433333333321    3456789999999


Q ss_pred             EEEEEeCCCCeeeEEEEeccCCeeEeec
Q 008927          314 LFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (548)
Q Consensus       314 L~~~sd~~~g~~~Ly~~d~~~g~~~~l~  341 (548)
                      .+++++...+...+|.+|.++|+++.+.
T Consensus       299 ~l~v~~~~~~~v~v~~~d~~tg~l~~~~  326 (347)
T 3hfq_A          299 FVVVVNQNTDNATLYARDLTSGKLSLLQ  326 (347)
T ss_dssp             EEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred             EEEEEEcCCCcEEEEEEeCCCCeEEecc
Confidence            5555554367788898899889877664

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.19  E-value=5e-09  Score=108.53  Aligned_cols=245  Identities=11%  Similarity=0.033  Sum_probs=148.3

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCC--CCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY--GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~--~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      +|++ ++.++++...++.|+++++.+  ++...+....  .........+.|+|+|+.++.. ..        ...|+++
T Consensus       129 ~~s~-~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~-~~--------d~~v~~~  196 (433)
T 3bws_A          129 RFID-NTRLAIPLLEDEGMDVLDINS--GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQ-MQ--------ANAVHVF  196 (433)
T ss_dssp             EESS-SSEEEEEBTTSSSEEEEETTT--CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEE-GG--------GTEEEEE
T ss_pred             EEeC-CCeEEEEeCCCCeEEEEECCC--CeEeeecCcccccccCCceeEEEEcCCCEEEEEE-CC--------CCEEEEE
Confidence            5666 778999887788899999987  5555433210  0011245567899988754432 22        1479999


Q ss_pred             ECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCc
Q 008927          227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (548)
Q Consensus       227 dl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~  306 (548)
                      |+++++.  ...+...........|+|||++|+....       ....|++.|+.. ++.  ...+.. .    ..+..+
T Consensus       197 d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~i~~~d~~~-~~~--~~~~~~-~----~~~~~~  259 (433)
T 3bws_A          197 DLKTLAY--KATVDLTGKWSKILLYDPIRDLVYCSNW-------ISEDISVIDRKT-KLE--IRKTDK-I----GLPRGL  259 (433)
T ss_dssp             ETTTCCE--EEEEECSSSSEEEEEEETTTTEEEEEET-------TTTEEEEEETTT-TEE--EEECCC-C----SEEEEE
T ss_pred             ECCCceE--EEEEcCCCCCeeEEEEcCCCCEEEEEec-------CCCcEEEEECCC-CcE--EEEecC-C----CCceEE
Confidence            9998761  2333333344667799999998865542       135799999874 542  223332 2    346778


Q ss_pred             eECcCCc-EEEEEeCCC----CeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeE
Q 008927          307 KWSSKGE-LFFVTDRKN----GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS  381 (548)
Q Consensus       307 ~wspDG~-L~~~sd~~~----g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~  381 (548)
                      .|+|||+ |++......    +...|+.+|+.+++.........   .      .....+.|   +++.++++...++  
T Consensus       260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---~------~~~~~~~~---~g~~l~~~~~~~~--  325 (433)
T 3bws_A          260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---N------KRHIVSGN---TENKIYVSDMCCS--  325 (433)
T ss_dssp             EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---C------EEEEEECS---STTEEEEEETTTT--
T ss_pred             EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---C------cceEEECC---CCCEEEEEecCCC--
Confidence            9999999 555543211    23579999998887654432111   1      11234544   6777776654444  


Q ss_pred             EEEEEECCCCceEeecCCCceeEee--eecCCEEEEEEecCCC-----------CCeEEEEEcCCCce
Q 008927          382 YLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVE-----------PSSVAKVTLDDHKL  436 (548)
Q Consensus       382 ~L~~~dl~~g~~~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~-----------p~~l~~~d~~~~~~  436 (548)
                      .|+++|+++++..........+..+  +++++.+++.......           .+.|+++|+.+++.
T Consensus       326 ~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~  393 (433)
T 3bws_A          326 KIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV  393 (433)
T ss_dssp             EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred             EEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence            6778898887654332222233333  6777777666543322           24899999887763

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.18  E-value=2.9e-09  Score=105.83  Aligned_cols=232  Identities=11%  Similarity=0.031  Sum_probs=134.6

Q ss_pred             EEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCc-eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCcc
Q 008927          157 VIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLV-SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ  234 (548)
Q Consensus       157 i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~-~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~  234 (548)
                      ++++...++.|+++|+.+  ++.. .+....   .. ....+.|+|||+.+++....        ...|+++|+.+++  
T Consensus         3 ~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~v~~~~--------~~~v~~~d~~~~~--   67 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEK--MAVDKVITIAD---AGPTPMVPMVAPGGRIAYATVNK--------SESLVKIDLVTGE--   67 (337)
T ss_dssp             EEEEEETTTEEEEEETTT--TEEEEEEECTT---CTTCCCCEEECTTSSEEEEEETT--------TTEEEEEETTTCC--
T ss_pred             EEEEcCCCCeEEEEECCC--CcEEEEEEcCC---CCCCccceEEcCCCCEEEEEeCC--------CCeEEEEECCCCC--
Confidence            455666678999999876  5443 333220   00 34567899999987665322        2479999999987  


Q ss_pred             CcE-EeeecC-C----ceeeeEECCCCCEEEEEEecCC-CCCC---CCceEEEEEecCCCceeeeEEEcCCCCCcccCCc
Q 008927          235 EPK-VLVSGS-D----FYAFPRMDPRGERMAWIEWHHP-NMPW---DKAELWVGYISENGDVYKRVCVAGFDPTIVESPT  304 (548)
Q Consensus       235 ~~~-~L~~~~-~----~~~~p~~SPDGk~La~~~~~~~-~~p~---~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~  304 (548)
                       .. .+..+. .    ......|||||++|++...... ...+   ....|++++++. ++.  ...+...     ....
T Consensus        68 -~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~--~~~~~~~-----~~~~  138 (337)
T 1pby_B           68 -TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSR--RKAFEAP-----RQIT  138 (337)
T ss_dssp             -EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEE--EEEEECC-----SSCC
T ss_pred             -eEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC-CcE--EEEEeCC-----CCcc
Confidence             43 333221 0    2345689999999876541100 0001   136899999974 542  2333332     3456


Q ss_pred             CceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC----
Q 008927          305 EPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG----  379 (548)
Q Consensus       305 ~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g----  379 (548)
                      .+.|+|||+ |++. +     ..|+++|+++++.....+.........|         .|   +++.|++....++    
T Consensus       139 ~~~~s~dg~~l~~~-~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~---------s~---dg~~l~~~~~~~~~~~~  200 (337)
T 1pby_B          139 MLAWARDGSKLYGL-G-----RDLHVMDPEAGTLVEDKPIQSWEAETYA---------QP---DVLAVWNQHESSGVMAT  200 (337)
T ss_dssp             CEEECTTSSCEEEE-S-----SSEEEEETTTTEEEEEECSTTTTTTTBC---------CC---BCCCCCCCCTTTTEEEE
T ss_pred             eeEECCCCCEEEEe-C-----CeEEEEECCCCcEeeeeeccccCCCcee---------CC---CccEEeeeccCCCceee
Confidence            788999999 6555 3     2599999988876544322110011112         22   3333332211111    


Q ss_pred             -----------------eEEEEEEECCCCceEeecCC--CceeEe--eeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          380 -----------------RSYLGILDDFGHSLSLLDIP--FTDIDN--ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       380 -----------------~~~L~~~dl~~g~~~~l~~~--~~~~~~--~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                                       ...|+++|+++++...+...  ......  +++|++.+++. .     ..|+++|+++++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~-----~~v~~~d~~~~~~  272 (337)
T 1pby_B          201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-Y-----NVLESFDLEKNAS  272 (337)
T ss_dssp             EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-E-----SEEEEEETTTTEE
T ss_pred             eeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-C-----CeEEEEECCCCcC
Confidence                             12689999999887644321  112222  36788887765 2     6899999987764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.14  E-value=6.3e-09  Score=104.02  Aligned_cols=159  Identities=12%  Similarity=0.039  Sum_probs=96.1

Q ss_pred             CCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCC
Q 008927          154 GDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (548)
Q Consensus       154 ~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~  232 (548)
                      ++.++.+...++.|+++|+.+  ++.. .+...   .......+.|+|||+.+++.. ..       ...|+++|+.+++
T Consensus        10 ~~~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~---~~~~~~~~~~s~dg~~~~v~~-~~-------~~~i~~~d~~t~~   76 (349)
T 1jmx_B           10 GHEYMIVTNYPNNLHVVDVAS--DTVYKSCVMP---DKFGPGTAMMAPDNRTAYVLN-NH-------YGDIYGIDLDTCK   76 (349)
T ss_dssp             TCEEEEEEETTTEEEEEETTT--TEEEEEEECS---SCCSSCEEEECTTSSEEEEEE-TT-------TTEEEEEETTTTE
T ss_pred             CCEEEEEeCCCCeEEEEECCC--CcEEEEEecC---CCCCCceeEECCCCCEEEEEe-CC-------CCcEEEEeCCCCc
Confidence            446677766788999999986  5443 33322   111345678999999776653 21       2479999999886


Q ss_pred             ccCcEEeeecCC-------ceeeeEECCCCCEEEEEEecC--CCCCC--CCceEEEEEecCCCceee-eEEEcCCCCCcc
Q 008927          233 IQEPKVLVSGSD-------FYAFPRMDPRGERMAWIEWHH--PNMPW--DKAELWVGYISENGDVYK-RVCVAGFDPTIV  300 (548)
Q Consensus       233 ~~~~~~L~~~~~-------~~~~p~~SPDGk~La~~~~~~--~~~p~--~~~~L~v~~~~~~g~~~~-~~~l~~~~~~~~  300 (548)
                         .........       ......|||||++|++...+.  ....+  ....|+++|++. ++... ...... .    
T Consensus        77 ---~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~-~----  147 (349)
T 1jmx_B           77 ---NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD-GLEAKPVRTFPM-P----  147 (349)
T ss_dssp             ---EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG-GGGBCCSEEEEC-C----
T ss_pred             ---EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC-ccccceeeeccC-C----
Confidence               433222111       134568999999988665320  00001  135899999974 43211 122222 2    


Q ss_pred             cCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEee
Q 008927          301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAI  340 (548)
Q Consensus       301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l  340 (548)
                      ..+..+.|+|||++ |+.+.     .|+++|+++++....
T Consensus       148 ~~~~~~~~s~dg~l-~~~~~-----~i~~~d~~~~~~~~~  181 (349)
T 1jmx_B          148 RQVYLMRAADDGSL-YVAGP-----DIYKMDVKTGKYTVA  181 (349)
T ss_dssp             SSCCCEEECTTSCE-EEESS-----SEEEECTTTCCEEEE
T ss_pred             CcccceeECCCCcE-EEccC-----cEEEEeCCCCceecc
Confidence            34566779999994 44433     299999988876543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.11  E-value=3.1e-08  Score=98.16  Aligned_cols=237  Identities=8%  Similarity=-0.028  Sum_probs=141.0

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceec---CCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPI---TPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~l---T~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      +|++++..|+...  ++.|.+.++..+ .....+   ....  ....+..+.|+|||+.|+....+         ..|.+
T Consensus        58 ~~~~~~~~l~~~~--dg~i~iw~~~~~-~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d---------~~i~~  123 (337)
T 1gxr_A           58 TISNPTRHVYTGG--KGCVKVWDISHP-GNKSPVSQLDCLN--RDNYIRSCKLLPDGCTLIVGGEA---------STLSI  123 (337)
T ss_dssp             EECSSSSEEEEEC--BSEEEEEETTST-TCCSCSEEEECSC--TTSBEEEEEECTTSSEEEEEESS---------SEEEE
T ss_pred             EEecCCcEEEEcC--CCeEEEEECCCC-CceeeeecccccC--CCCcEEEEEEcCCCCEEEEEcCC---------CcEEE
Confidence            5667777777765  777888787652 222222   1100  12346678899999988775433         36888


Q ss_pred             EECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcC
Q 008927          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (548)
Q Consensus       226 idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~  305 (548)
                      +|+.+++......+...........|+|||+.|+....        ...|++.++.. ++  ....+....    ..+..
T Consensus       124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--------dg~v~~~d~~~-~~--~~~~~~~~~----~~i~~  188 (337)
T 1gxr_A          124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS--------DGNIAVWDLHN-QT--LVRQFQGHT----DGASC  188 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET--------TSCEEEEETTT-TE--EEEEECCCS----SCEEE
T ss_pred             EECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC--------CCcEEEEeCCC-Cc--eeeeeeccc----CceEE
Confidence            89988761001222333344667899999998875542        34688999874 43  233444333    45778


Q ss_pred             ceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (548)
Q Consensus       306 ~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~  385 (548)
                      +.|+|||++++.... +|  .|+.+|+.+++........    .+     .....+.|   +++.|+. ...++  .|++
T Consensus       189 ~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~----~~-----v~~~~~s~---~~~~l~~-~~~~~--~i~~  250 (337)
T 1gxr_A          189 IDISNDGTKLWTGGL-DN--TVRSWDLREGRQLQQHDFT----SQ-----IFSLGYCP---TGEWLAV-GMESS--NVEV  250 (337)
T ss_dssp             EEECTTSSEEEEEET-TS--EEEEEETTTTEEEEEEECS----SC-----EEEEEECT---TSSEEEE-EETTS--CEEE
T ss_pred             EEECCCCCEEEEEec-CC--cEEEEECCCCceEeeecCC----Cc-----eEEEEECC---CCCEEEE-EcCCC--cEEE
Confidence            899999995555444 34  5777788777654433211    11     11244553   6665554 44444  4777


Q ss_pred             EECCCCceEeecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          386 LDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       386 ~dl~~g~~~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      +|+.+++...+......+..+  +++++.++. ++.   ...|.++|+.+++.
T Consensus       251 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~---dg~i~~~~~~~~~~  299 (337)
T 1gxr_A          251 LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVS-TGK---DNLLNAWRTPYGAS  299 (337)
T ss_dssp             EETTSSCEEEECCCSSCEEEEEECTTSSEEEE-EET---TSEEEEEETTTCCE
T ss_pred             EECCCCCeEEEcCCccceeEEEECCCCCEEEE-ecC---CCcEEEEECCCCeE
Confidence            888888776665443445444  566775543 332   35788899877653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.08  E-value=7.5e-08  Score=95.33  Aligned_cols=265  Identities=9%  Similarity=0.019  Sum_probs=150.2

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCC-CCCCccccceeeCCeeeEEECCEEEEEeCCCCe
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITP-KEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR  166 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~-~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~  166 (548)
                      ..+..+.++| |..++...     +|...||.....  .....+.. ........+.   .-.|++++..|+... .++.
T Consensus        52 ~~v~~~~~~~~~~~l~~~~-----dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~l~~~~-~d~~  120 (337)
T 1gxr_A           52 EVVCAVTISNPTRHVYTGG-----KGCVKVWDISHP--GNKSPVSQLDCLNRDNYIR---SCKLLPDGCTLIVGG-EAST  120 (337)
T ss_dssp             SCCCEEEECSSSSEEEEEC-----BSEEEEEETTST--TCCSCSEEEECSCTTSBEE---EEEECTTSSEEEEEE-SSSE
T ss_pred             CceEEEEEecCCcEEEEcC-----CCeEEEEECCCC--CceeeeecccccCCCCcEE---EEEEcCCCCEEEEEc-CCCc
Confidence            5677889999 66555442     377778877543  22222211 0000011111   125666666666654 5678


Q ss_pred             EEEEeCCCCCCCce---ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927          167 LYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (548)
Q Consensus       167 Ly~~~~~~~~~~~~---~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~  243 (548)
                      |++.++..  ++.+   .+...    ......+.|+|+++.|+....+         ..|.++|+.+++.  ...+....
T Consensus       121 i~~~d~~~--~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~d---------g~v~~~d~~~~~~--~~~~~~~~  183 (337)
T 1gxr_A          121 LSIWDLAA--PTPRIKAELTSS----APACYALAISPDSKVCFSCCSD---------GNIAVWDLHNQTL--VRQFQGHT  183 (337)
T ss_dssp             EEEEECCC--C--EEEEEEECS----SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEE--EEEECCCS
T ss_pred             EEEEECCC--CCcceeeecccC----CCceEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCce--eeeeeccc
Confidence            88888876  4432   22222    2245677899999987765433         3588899988761  23333334


Q ss_pred             CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCC
Q 008927          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG  323 (548)
Q Consensus       244 ~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g  323 (548)
                      .......|+|||+.|+....        ...|++.|+.. ++.  ...+.. .    ..+..+.|+|||+++++... ++
T Consensus       184 ~~i~~~~~~~~~~~l~~~~~--------dg~i~~~d~~~-~~~--~~~~~~-~----~~v~~~~~s~~~~~l~~~~~-~~  246 (337)
T 1gxr_A          184 DGASCIDISNDGTKLWTGGL--------DNTVRSWDLRE-GRQ--LQQHDF-T----SQIFSLGYCPTGEWLAVGME-SS  246 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEET--------TSEEEEEETTT-TEE--EEEEEC-S----SCEEEEEECTTSSEEEEEET-TS
T ss_pred             CceEEEEECCCCCEEEEEec--------CCcEEEEECCC-Cce--EeeecC-C----CceEEEEECCCCCEEEEEcC-CC
Confidence            45677899999998885541        35799999874 431  222322 2    45677899999995555443 33


Q ss_pred             eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCcee
Q 008927          324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDI  403 (548)
Q Consensus       324 ~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~  403 (548)
                        .|+.+++.+++...+.....    +     .....+.|   +++.|+ +...++  .|.++|+.+++..........+
T Consensus       247 --~i~~~~~~~~~~~~~~~~~~----~-----v~~~~~~~---~~~~l~-~~~~dg--~i~~~~~~~~~~~~~~~~~~~v  309 (337)
T 1gxr_A          247 --NVEVLHVNKPDKYQLHLHES----C-----VLSLKFAY---CGKWFV-STGKDN--LLNAWRTPYGASIFQSKESSSV  309 (337)
T ss_dssp             --CEEEEETTSSCEEEECCCSS----C-----EEEEEECT---TSSEEE-EEETTS--EEEEEETTTCCEEEEEECSSCE
T ss_pred             --cEEEEECCCCCeEEEcCCcc----c-----eeEEEECC---CCCEEE-EecCCC--cEEEEECCCCeEEEEecCCCcE
Confidence              47777887776654432111    1     12244553   555554 444455  4667788877655332222234


Q ss_pred             Eee--eecCCEEEE
Q 008927          404 DNI--TLGNDCLFV  415 (548)
Q Consensus       404 ~~~--s~d~~~l~~  415 (548)
                      ..+  +++++.++.
T Consensus       310 ~~~~~s~~~~~l~~  323 (337)
T 1gxr_A          310 LSCDISVDDKYIVT  323 (337)
T ss_dssp             EEEEECTTSCEEEE
T ss_pred             EEEEECCCCCEEEE
Confidence            433  566665543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.06  E-value=2.4e-08  Score=101.05  Aligned_cols=168  Identities=10%  Similarity=0.046  Sum_probs=102.5

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCC----C-c------eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDS----S-P------LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDAL  217 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~----~-~------~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~  217 (548)
                      .|+|+|+.|++.+..++.|++++++...+    + .      ..+....   ......+.|||||+.|++..+..     
T Consensus       161 ~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~-----  232 (361)
T 3scy_A          161 RITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP---GSGPRHLIFNSDGKFAYLINEIG-----  232 (361)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT---TCCEEEEEECTTSSEEEEEETTT-----
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC---CCCCeEEEEcCCCCEEEEEcCCC-----
Confidence            67778888999887777777776654212    2 1      1111111   12234578999999876654221     


Q ss_pred             CceeEEEEEECCCCCccCcEEeee---cC---CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEec-CCCceeeeE
Q 008927          218 NSTTEIVAIALNGQNIQEPKVLVS---GS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRV  290 (548)
Q Consensus       218 ~~~~~l~~idl~~g~~~~~~~L~~---~~---~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~-~~g~~~~~~  290 (548)
                         ..|.++++++++   .+.+..   ..   .......|||||++|+... ..     ....|.+++++ .+|++....
T Consensus       233 ---~~v~v~~~~~g~---~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~-~~-----~~~~i~v~~~~~~~g~~~~~~  300 (361)
T 3scy_A          233 ---GTVIAFRYADGM---LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN-RL-----KADGVAIFKVDETNGTLTKVG  300 (361)
T ss_dssp             ---CEEEEEEEETTE---EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEE-CS-----SSCEEEEEEECTTTCCEEEEE
T ss_pred             ---CeEEEEEecCCc---eEEeEEEecCCCCCCCcccEEECCCCCEEEEEC-CC-----CCCEEEEEEEcCCCCcEEEee
Confidence               467888887776   433322   11   1234678999999886433 21     03467777775 235433222


Q ss_pred             EEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeec
Q 008927          291 CVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (548)
Q Consensus       291 ~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~  341 (548)
                      .+.. .    .....+.|+|||+.+++++...+.-.+|.+|+++|+.+.+.
T Consensus       301 ~~~~-g----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~  346 (361)
T 3scy_A          301 YQLT-G----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK  346 (361)
T ss_dssp             EEEC-S----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred             EecC-C----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence            2332 1    34567899999995555554367788999999898877664

>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A

Probab=99.06  E-value=1e-10  Score=113.53  Aligned_cols=77  Identities=18%  Similarity=0.312  Sum_probs=50.9

Q ss_pred             CCCccCCeE-EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCC
Q 008927          455 KSYFSLPEL-IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYG  533 (548)
Q Consensus       455 ~~~~~~pe~-i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyR  533 (548)
                      +..++..|. ++++ . ||.+|+|+|+.|.+       .++.|+||++|||+.....+.+....|+||++||+|+.+|+|
T Consensus        24 ~~~~~~~e~~~~~~-~-dG~~i~g~l~~P~~-------~~~~p~Vl~~HG~g~~~~~~~~~~~a~~la~~Gy~Vl~~D~r   94 (259)
T 4ao6_A           24 ERKLSVQERGFSLE-V-DGRTVPGVYWSPAE-------GSSDRLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGP   94 (259)
T ss_dssp             EEETTEEEEEEEEE-E-TTEEEEEEEEEESS-------SCCSEEEEEEC--------CHHHHHHHHHHHTTEEEEEECCC
T ss_pred             cccCCceEEEEEEe-e-CCeEEEEEEEeCCC-------CCCCCEEEEeCCCcccccchHHHHHHHHHHHCCCeEEeeccC
Confidence            344444444 4444 4 99999999999964       356799999999998877777888899999999999999999


Q ss_pred             CCCCCCh
Q 008927          534 GSTGLSS  540 (548)
Q Consensus       534 GStGyG~  540 (548)
                      |+...+.
T Consensus        95 G~G~s~~  101 (259)
T 4ao6_A           95 GHGERAS  101 (259)
T ss_dssp             C------
T ss_pred             CCCCCCC
Confidence            9865543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.02  E-value=3.1e-07  Score=92.03  Aligned_cols=307  Identities=11%  Similarity=0.072  Sum_probs=170.9

Q ss_pred             cccCCCCCCCcCCHHHHhcCCCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeC
Q 008927           68 ITAPYGSWKSPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYG  146 (548)
Q Consensus        68 ~~~~~g~w~spit~~~l~~~~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~yg  146 (548)
                      .-...|+...+++.   ......+..+.++| |+.++...    .+|...||.....  .....+......+.       
T Consensus        15 ~~~~~G~~~~~~~l---~~h~~~v~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~--~~~~~~~~h~~~v~-------   78 (369)
T 3zwl_B           15 NLYFQGSHMKAIKL---TGHERPLTQVKYNKEGDLLFSCS----KDSSASVWYSLNG--ERLGTLDGHTGTIW-------   78 (369)
T ss_dssp             CCCSSCCSEEEEEE---ECCSSCEEEEEECTTSCEEEEEE----SSSCEEEEETTTC--CEEEEECCCSSCEE-------
T ss_pred             ceEEeccccccEEE---EEeeceEEEEEEcCCCCEEEEEe----CCCEEEEEeCCCc--hhhhhhhhcCCcEE-------
Confidence            44556777777654   33345688899999 66555433    2577777866432  22333332211111       


Q ss_pred             CeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       147 g~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      ...|++++..|+... .++.|++.++..  ++.......    ......+.|+|+|+.|++...+...    ....|.++
T Consensus        79 ~~~~~~~~~~l~s~~-~dg~i~iwd~~~--~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~~~~----~~g~i~~~  147 (369)
T 3zwl_B           79 SIDVDCFTKYCVTGS-ADYSIKLWDVSN--GQCVATWKS----PVPVKRVEFSPCGNYFLAILDNVMK----NPGSINIY  147 (369)
T ss_dssp             EEEECTTSSEEEEEE-TTTEEEEEETTT--CCEEEEEEC----SSCEEEEEECTTSSEEEEEECCBTT----BCCEEEEE
T ss_pred             EEEEcCCCCEEEEEe-CCCeEEEEECCC--CcEEEEeec----CCCeEEEEEccCCCEEEEecCCccC----CCCEEEEE
Confidence            125666666665544 577888889876  444332222    2346678899999998876543110    12356677


Q ss_pred             ECCCCCcc---------CcEEeeecCC--ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCC
Q 008927          227 ALNGQNIQ---------EPKVLVSGSD--FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF  295 (548)
Q Consensus       227 dl~~g~~~---------~~~~L~~~~~--~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~  295 (548)
                      |+.++...         ....+.....  ......|+|||+.|+...        ....|++.|+...+.  ....+...
T Consensus       148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~--~~~~~~~~  217 (369)
T 3zwl_B          148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH--------KDGKISKYDVSNNYE--YVDSIDLH  217 (369)
T ss_dssp             EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE--------TTSEEEEEETTTTTE--EEEEEECC
T ss_pred             EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEc--------CCCEEEEEECCCCcE--eEEEEecC
Confidence            76655310         0122222222  466778999999887544        135799999975343  23334433


Q ss_pred             CCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEE
Q 008927          296 DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY  375 (548)
Q Consensus       296 ~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~  375 (548)
                      .    ..+..+.|+|||++++.... +|  .|..+|+.+++...........         ....+.|   +++.+++..
T Consensus       218 ~----~~v~~~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~---------~~~~~~~---~~~~l~~~~  278 (369)
T 3zwl_B          218 E----KSISDMQFSPDLTYFITSSR-DT--NSFLVDVSTLQVLKKYETDCPL---------NTAVITP---LKEFIILGG  278 (369)
T ss_dssp             S----SCEEEEEECTTSSEEEEEET-TS--EEEEEETTTCCEEEEEECSSCE---------EEEEECS---SSSEEEEEE
T ss_pred             C----CceeEEEECCCCCEEEEecC-Cc--eEEEEECCCCceeeeecCCCCc---------eeEEecC---CCceEEEee
Confidence            3    45778899999995555444 34  5777888777654433211111         1133443   555555443


Q ss_pred             EeC-----------CeEEEEEEECCCCceE-eecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCC
Q 008927          376 RQN-----------GRSYLGILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDH  434 (548)
Q Consensus       376 ~~~-----------g~~~L~~~dl~~g~~~-~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~  434 (548)
                      ..+           +...+.++|..+++.. .+......+..+  +++++.|+. ++.   ...|.+++++.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~---dg~v~iw~~~~~  347 (369)
T 3zwl_B          279 GQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYAS-GGE---DGFIRLHHFEKS  347 (369)
T ss_dssp             CCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE-EET---TSEEEEEEECHH
T ss_pred             cCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEE-EcC---CCeEEEEECccc
Confidence            221           2236778888777644 333333345444  566665543 332   256777877654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.96  E-value=1.9e-07  Score=94.79  Aligned_cols=171  Identities=10%  Similarity=-0.007  Sum_probs=89.7

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCC-CCCCCceecCCCCCCCCceecceeeCCCCCEE-EEEEeccCCC-CCC----cee
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSID-SKDSSPLPITPDYGEPLVSYADGIFDPRFNRY-VTVREDRRQD-ALN----STT  221 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~-~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i-~~v~~~~~~~-~~~----~~~  221 (548)
                      +|+++++.|+..+..  .|.+++++ .  ++..++.....  ......+.|+|||++| +++.....-. ..+    ...
T Consensus        46 a~spdg~~l~~~~~~--~v~~~~~~~~--g~~~~~~~~~~--~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g  119 (365)
T 1jof_A           46 TFDHERKNIYGAAMK--KWSSFAVKSP--TEIVHEASHPI--GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG  119 (365)
T ss_dssp             EECTTSSEEEEEEBT--EEEEEEEEET--TEEEEEEEEEC--CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred             EECCCCCEEEEEccc--eEEEEEECCC--CCEEEeeEeec--CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence            566777777766643  67666664 3  44443322100  0112346799999974 4443200000 000    012


Q ss_pred             EEEEEECC-CCCccCcEEeee----cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCC
Q 008927          222 EIVAIALN-GQNIQEPKVLVS----GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD  296 (548)
Q Consensus       222 ~l~~idl~-~g~~~~~~~L~~----~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~  296 (548)
                      .+.+++++ .|+.  ...+..    .........|||||++|+ +. +.     ....|++++++.+|++.....+....
T Consensus       120 ~v~v~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~spdG~~l~-~~-~~-----~~~~v~~~~~~~~g~~~~~~~~~~~~  190 (365)
T 1jof_A          120 YGNVFSVSETGKL--EKNVQNYEYQENTGIHGMVFDPTETYLY-SA-DL-----TANKLWTHRKLASGEVELVGSVDAPD  190 (365)
T ss_dssp             EEEEEEECTTCCE--EEEEEEEECCTTCCEEEEEECTTSSEEE-EE-ET-----TTTEEEEEEECTTSCEEEEEEEECSS
T ss_pred             eEEEEccCCCCcC--cceEeeEEeCCCCcceEEEECCCCCEEE-EE-cC-----CCCEEEEEEECCCCCEEEeeeEecCC
Confidence            45555554 3441  222321    233456788999999875 44 21     13579999997335432222222100


Q ss_pred             CCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCee
Q 008927          297 PTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV  337 (548)
Q Consensus       297 ~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~  337 (548)
                      ..  .....+.|+|||+ ||+.... .+.-.+|.++.++|+.
T Consensus       191 ~g--~~p~~~~~spdg~~l~v~~~~-~~~v~v~~~~~~~g~~  229 (365)
T 1jof_A          191 PG--DHPRWVAMHPTGNYLYALMEA-GNRICEYVIDPATHMP  229 (365)
T ss_dssp             TT--CCEEEEEECTTSSEEEEEETT-TTEEEEEEECTTTCCE
T ss_pred             CC--CCCCEeEECCCCCEEEEEECC-CCeEEEEEEeCCCCcE
Confidence            01  2355678999999 5544444 6666777777767764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.91  E-value=1.1e-07  Score=96.52  Aligned_cols=219  Identities=13%  Similarity=0.008  Sum_probs=116.5

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC-CCCccCcEEeee--cCCceeeeEECCCCCEE-EEEEecCCCC
Q 008927          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN-GQNIQEPKVLVS--GSDFYAFPRMDPRGERM-AWIEWHHPNM  268 (548)
Q Consensus       193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~-~g~~~~~~~L~~--~~~~~~~p~~SPDGk~L-a~~~~~~~~~  268 (548)
                      ...+.|+|||+.|+...++          .|.+++++ +|+   ...+..  ..+......|||||++| +++.....-.
T Consensus        42 ~~~~a~spdg~~l~~~~~~----------~v~~~~~~~~g~---~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~  108 (365)
T 1jof_A           42 ISWMTFDHERKNIYGAAMK----------KWSSFAVKSPTE---IVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYA  108 (365)
T ss_dssp             CSEEEECTTSSEEEEEEBT----------EEEEEEEEETTE---EEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCC
T ss_pred             CcEEEECCCCCEEEEEccc----------eEEEEEECCCCC---EEEeeEeecCCCCccEEECCCCCEEEEEEecCCcce
Confidence            4457899999987654321          46666665 665   444322  11223346899999974 4444100000


Q ss_pred             CC------CCceEEEEEecCCCceeeeEEE-cCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEecc-CCeeEee
Q 008927          269 PW------DKAELWVGYISENGDVYKRVCV-AGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES-NNEVLAI  340 (548)
Q Consensus       269 p~------~~~~L~v~~~~~~g~~~~~~~l-~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~-~g~~~~l  340 (548)
                      .+      ....+.+++++.+|++...... .... .  .....+.|+|||+.+|+++.+.  ..|++++++ +|+.+.+
T Consensus       109 ~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~-~--~~~~~~~~spdG~~l~~~~~~~--~~v~~~~~~~~g~~~~~  183 (365)
T 1jof_A          109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQE-N--TGIHGMVFDPTETYLYSADLTA--NKLWTHRKLASGEVELV  183 (365)
T ss_dssp             EEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCT-T--CCEEEEEECTTSSEEEEEETTT--TEEEEEEECTTSCEEEE
T ss_pred             eccceeecCCceEEEEccCCCCcCcceEeeEEeCC-C--CcceEEEECCCCCEEEEEcCCC--CEEEEEEECCCCCEEEe
Confidence            00      1345778888755653222111 1111 1  3456789999999656766533  367777776 6776543


Q ss_pred             cccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE----eec-CCC-----c-------ee
Q 008927          341 YSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS----LLD-IPF-----T-------DI  403 (548)
Q Consensus       341 ~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~----~l~-~~~-----~-------~~  403 (548)
                      ....... . .  .+...+.++|   |++.||+....++.-.++.+|.++|+..    .+. .+.     .       ..
T Consensus       184 ~~~~~~~-~-g--~~p~~~~~sp---dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  256 (365)
T 1jof_A          184 GSVDAPD-P-G--DHPRWVAMHP---TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYR  256 (365)
T ss_dssp             EEEECSS-T-T--CCEEEEEECT---TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEE
T ss_pred             eeEecCC-C-C--CCCCEeEECC---CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccc
Confidence            2110000 0 0  1112345664   7777766544456667777777677643    222 221     1       12


Q ss_pred             E--e-eeecCCEEEEEEecCC--CCCeEEEEEcC-CCce
Q 008927          404 D--N-ITLGNDCLFVEGASGV--EPSSVAKVTLD-DHKL  436 (548)
Q Consensus       404 ~--~-~s~d~~~l~~~~ss~~--~p~~l~~~d~~-~~~~  436 (548)
                      .  . +++|++.|++.....+  .+..|.+++++ ++++
T Consensus       257 ~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~  295 (365)
T 1jof_A          257 ADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI  295 (365)
T ss_dssp             EEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE
T ss_pred             ccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE
Confidence            2  3 5688888865543322  23477777774 5654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.88  E-value=2.8e-07  Score=92.22  Aligned_cols=226  Identities=12%  Similarity=0.007  Sum_probs=128.0

Q ss_pred             CeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       147 g~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      +..|.++++.|+|++..+++||++++++  ++.+.++..     .....+.|+|||+.++..  .         ..|+++
T Consensus        53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~--~~~~~~~~~-----~~v~~i~~~~dg~l~v~~--~---------~gl~~~  114 (326)
T 2ghs_A           53 GPTFDPASGTAWWFNILERELHELHLAS--GRKTVHALP-----FMGSALAKISDSKQLIAS--D---------DGLFLR  114 (326)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTT--TEEEEEECS-----SCEEEEEEEETTEEEEEE--T---------TEEEEE
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEECCC--CcEEEEECC-----CcceEEEEeCCCeEEEEE--C---------CCEEEE
Confidence            4578888889999987778999999987  555554332     234566799998865542  2         249999


Q ss_pred             ECCCCCccCcEEeeecC-----CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCccc
Q 008927          227 ALNGQNIQEPKVLVSGS-----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE  301 (548)
Q Consensus       227 dl~~g~~~~~~~L~~~~-----~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~  301 (548)
                      |+++++   .+.+....     .......++|||+ |.+....... ......||.++ +  |++   ..+....    .
T Consensus       115 d~~~g~---~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~-~~~~~~l~~~~-~--g~~---~~~~~~~----~  179 (326)
T 2ghs_A          115 DTATGV---LTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKA-ETGAGSIYHVA-K--GKV---TKLFADI----S  179 (326)
T ss_dssp             ETTTCC---EEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTC-CTTCEEEEEEE-T--TEE---EEEEEEE----S
T ss_pred             ECCCCc---EEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcC-CCCceEEEEEe-C--CcE---EEeeCCC----c
Confidence            999988   66665321     1245678999998 4333322110 11245788888 3  542   2222211    2


Q ss_pred             CCcCceECcCCc-EEEEEeCCCCeeeEEEEecc--CC-ee---EeecccccccCCCcccccCcceeeeeecCCCCEEEEE
Q 008927          302 SPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIES--NN-EV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACS  374 (548)
Q Consensus       302 ~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~--~g-~~---~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~  374 (548)
                      ....+.|+|||+ ||+.... .  ..|++++.+  +| +.   +.+......    .+..  ..+.+.    .++.|++.
T Consensus       180 ~~~~i~~s~dg~~lyv~~~~-~--~~I~~~d~~~~~Gl~~~~~~~~~~~~~~----~~~p--~gi~~d----~~G~lwva  246 (326)
T 2ghs_A          180 IPNSICFSPDGTTGYFVDTK-V--NRLMRVPLDARTGLPTGKAEVFIDSTGI----KGGM--DGSVCD----AEGHIWNA  246 (326)
T ss_dssp             SEEEEEECTTSCEEEEEETT-T--CEEEEEEBCTTTCCBSSCCEEEEECTTS----SSEE--EEEEEC----TTSCEEEE
T ss_pred             ccCCeEEcCCCCEEEEEECC-C--CEEEEEEcccccCCcccCceEEEECCCC----CCCC--CeeEEC----CCCCEEEE
Confidence            235688999999 6554332 2  468888874  55 42   112111000    1111  113332    23345544


Q ss_pred             EEeCCeEEEEEEECCCCceEeecCCCceeEee--e-ecCCEEEEEEecC
Q 008927          375 YRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI--T-LGNDCLFVEGASG  420 (548)
Q Consensus       375 ~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~~~--s-~d~~~l~~~~ss~  420 (548)
                      ...+  ..|+++|+++...+.+..+...+..+  + ++++.|++.....
T Consensus       247 ~~~~--~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          247 RWGE--GAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             EETT--TEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             EeCC--CEEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            3222  36889998544455665554344444  3 5667777665543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.87  E-value=1.9e-06  Score=86.22  Aligned_cols=229  Identities=12%  Similarity=0.051  Sum_probs=130.2

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      +|++++..|+.. ..++.|++.++..  ++. ..+...    ...+..+.|+||++.|+....+         ..|.++|
T Consensus        39 ~~s~~~~~l~~~-~~dg~i~vwd~~~--~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~d---------g~i~iwd  102 (369)
T 3zwl_B           39 KYNKEGDLLFSC-SKDSSASVWYSLN--GERLGTLDGH----TGTIWSIDVDCFTKYCVTGSAD---------YSIKLWD  102 (369)
T ss_dssp             EECTTSCEEEEE-ESSSCEEEEETTT--CCEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------TEEEEEE
T ss_pred             EEcCCCCEEEEE-eCCCEEEEEeCCC--chhhhhhhhc----CCcEEEEEEcCCCCEEEEEeCC---------CeEEEEE
Confidence            456666655554 3567788888876  444 344433    2346678899999988775433         3688999


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeee--------EEEcCCCCCc
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR--------VCVAGFDPTI  299 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~--------~~l~~~~~~~  299 (548)
                      +.+++   ...............|+|||+.|+....+...   ....|.+.++.........        ..+...... 
T Consensus       103 ~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~---~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-  175 (369)
T 3zwl_B          103 VSNGQ---CVATWKSPVPVKRVEFSPCGNYFLAILDNVMK---NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL-  175 (369)
T ss_dssp             TTTCC---EEEEEECSSCEEEEEECTTSSEEEEEECCBTT---BCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC-
T ss_pred             CCCCc---EEEEeecCCCeEEEEEccCCCEEEEecCCccC---CCCEEEEEEecCCccceeecccccceeeeccCCcCc-
Confidence            99987   54444455557778999999998866532111   1257888888743221111        111111100 


Q ss_pred             ccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccC-CeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC
Q 008927          300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN-NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (548)
Q Consensus       300 ~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~-g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~  378 (548)
                       ..+....|+|||+++++... +|  .|+.+|+.+ ++........   ..+     .....|.|   +++.|+ +...+
T Consensus       176 -~~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~---~~~-----v~~~~~~~---~~~~l~-~~~~d  239 (369)
T 3zwl_B          176 -DAATVAGWSTKGKYIIAGHK-DG--KISKYDVSNNYEYVDSIDLH---EKS-----ISDMQFSP---DLTYFI-TSSRD  239 (369)
T ss_dssp             -CCEEEEEECGGGCEEEEEET-TS--EEEEEETTTTTEEEEEEECC---SSC-----EEEEEECT---TSSEEE-EEETT
T ss_pred             -cceeEEEEcCCCCEEEEEcC-CC--EEEEEECCCCcEeEEEEecC---CCc-----eeEEEECC---CCCEEE-EecCC
Confidence             15667889999995555544 44  577778766 4433222110   011     12244553   555554 44444


Q ss_pred             CeEEEEEEECCCCceEeecCCCceeEee--eecCCEEEEEEe
Q 008927          379 GRSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGA  418 (548)
Q Consensus       379 g~~~L~~~dl~~g~~~~l~~~~~~~~~~--s~d~~~l~~~~s  418 (548)
                      +  .|.++|+.+++..........+..+  +++++.+++...
T Consensus       240 ~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  279 (369)
T 3zwl_B          240 T--NSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGG  279 (369)
T ss_dssp             S--EEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEEC
T ss_pred             c--eEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeec
Confidence            4  5777888887654332222223333  667776665543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.86  E-value=3.2e-06  Score=83.28  Aligned_cols=268  Identities=11%  Similarity=0.033  Sum_probs=146.5

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L  167 (548)
                      ..+..+.++| |+.++-..    .+|...||.....  ...+.+......+.       .-.|+++++.|+... .++.|
T Consensus        24 ~~v~~~~~s~~~~~l~s~~----~dg~i~iw~~~~~--~~~~~~~~h~~~v~-------~~~~~~~~~~l~s~~-~d~~i   89 (312)
T 4ery_A           24 KAVSSVKFSPNGEWLASSS----ADKLIKIWGAYDG--KFEKTISGHKLGIS-------DVAWSSDSNLLVSAS-DDKTL   89 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEE----TTSCEEEEETTTC--CEEEEECCCSSCEE-------EEEECTTSSEEEEEE-TTSEE
T ss_pred             CcEEEEEECCCCCEEEEee----CCCeEEEEeCCCc--ccchhhccCCCceE-------EEEEcCCCCEEEEEC-CCCEE
Confidence            5577889999 66554433    2577777765332  12222322211111       125667776665544 56788


Q ss_pred             EEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCce
Q 008927          168 YKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY  246 (548)
Q Consensus       168 y~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~  246 (548)
                      .+.++..  ++. +.+...    ........|+|+++.|+....+         ..|.++|+.+++.  ...+......+
T Consensus        90 ~vwd~~~--~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~--~~~~~~~~~~v  152 (312)
T 4ery_A           90 KIWDVSS--GKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFD---------ESVRIWDVKTGKC--LKTLPAHSDPV  152 (312)
T ss_dssp             EEEETTT--CCEEEEEECC----SSCEEEEEECSSSSEEEEEETT---------SCEEEEETTTCCE--EEEECCCSSCE
T ss_pred             EEEECCC--CcEEEEEcCC----CCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCEE--EEEecCCCCcE
Confidence            8888876  443 334332    1235567899999987765433         3588889988761  23343334456


Q ss_pred             eeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeee
Q 008927          247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN  326 (548)
Q Consensus       247 ~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~  326 (548)
                      ....|+|||+.|+....        ...|.+.|+.. ++  ....+.... .  ..+....|+|||++++.... +|  .
T Consensus       153 ~~~~~~~~~~~l~~~~~--------d~~i~~wd~~~-~~--~~~~~~~~~-~--~~~~~~~~~~~~~~l~~~~~-d~--~  215 (312)
T 4ery_A          153 SAVHFNRDGSLIVSSSY--------DGLCRIWDTAS-GQ--CLKTLIDDD-N--PPVSFVKFSPNGKYILAATL-DN--T  215 (312)
T ss_dssp             EEEEECTTSSEEEEEET--------TSCEEEEETTT-CC--EEEEECCSS-C--CCEEEEEECTTSSEEEEEET-TT--E
T ss_pred             EEEEEcCCCCEEEEEeC--------CCcEEEEECCC-Cc--eeeEEeccC-C--CceEEEEECCCCCEEEEEcC-CC--e
Confidence            77889999998875442        34688889874 43  122232211 1  34566889999995555444 44  5


Q ss_pred             EEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eecCCCceeEe
Q 008927          327 LHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTDIDN  405 (548)
Q Consensus       327 Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~~~~~~~~~  405 (548)
                      |..+|+.+++..........   ..+..   ...+.+   +++.++++...++  .|+++|+.+++.. .+......+..
T Consensus       216 i~iwd~~~~~~~~~~~~~~~---~~~~~---~~~~~~---~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~  284 (312)
T 4ery_A          216 LKLWDYSKGKCLKTYTGHKN---EKYCI---FANFSV---TGGKWIVSGSEDN--LVYIWNLQTKEIVQKLQGHTDVVIS  284 (312)
T ss_dssp             EEEEETTTTEEEEEECSSCC---SSSCC---CEEEEC---SSSCEEEECCTTS--CEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EEEEECCCCcEEEEEEecCC---ceEEE---EEEEEe---CCCcEEEEECCCC--EEEEEECCCchhhhhhhccCCcEEE
Confidence            66778777765433221110   11100   011221   3344444444444  4667788877644 34333233333


Q ss_pred             e--eecCCEEEE
Q 008927          406 I--TLGNDCLFV  415 (548)
Q Consensus       406 ~--s~d~~~l~~  415 (548)
                      +  .+++..++.
T Consensus       285 ~~~~p~~~~l~s  296 (312)
T 4ery_A          285 TACHPTENIIAS  296 (312)
T ss_dssp             EEECSSSSEEEE
T ss_pred             EeecCcCCceEE
Confidence            3  455655443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.86  E-value=4.7e-07  Score=88.80  Aligned_cols=236  Identities=14%  Similarity=0.112  Sum_probs=136.4

Q ss_pred             CeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       147 g~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      +..|.++++.|+|+...++.|+++++++  + .+.+...    ......+.++|||+.++.  ...       ...|+++
T Consensus        32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~--~-~~~~~~~----~~~~~~l~~~~dg~l~v~--~~~-------~~~i~~~   95 (296)
T 3e5z_A           32 GPVYVPARSAVIFSDVRQNRTWAWSDDG--Q-LSPEMHP----SHHQNGHCLNKQGHLIAC--SHG-------LRRLERQ   95 (296)
T ss_dssp             EEEEEGGGTEEEEEEGGGTEEEEEETTS--C-EEEEESS----CSSEEEEEECTTCCEEEE--ETT-------TTEEEEE
T ss_pred             CCeEeCCCCEEEEEeCCCCEEEEEECCC--C-eEEEECC----CCCcceeeECCCCcEEEE--ecC-------CCeEEEE
Confidence            4578888888999987788999999987  5 5555432    123456789999985433  321       1479999


Q ss_pred             ECCCCCccCcEEeeec-C----CceeeeEECCCCCEEEEEEec----------CCCCCCCCceEEEEEecCCCceeeeEE
Q 008927          227 ALNGQNIQEPKVLVSG-S----DFYAFPRMDPRGERMAWIEWH----------HPNMPWDKAELWVGYISENGDVYKRVC  291 (548)
Q Consensus       227 dl~~g~~~~~~~L~~~-~----~~~~~p~~SPDGk~La~~~~~----------~~~~p~~~~~L~v~~~~~~g~~~~~~~  291 (548)
                      |+.+|+   .+.+... .    .......++|||+ |.+....          .....-....||.++.+  |+   ...
T Consensus        96 d~~~g~---~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~---~~~  166 (296)
T 3e5z_A           96 REPGGE---WESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GT---LSA  166 (296)
T ss_dssp             CSTTCC---EEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SC---EEE
T ss_pred             cCCCCc---EEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC--CC---EEE
Confidence            998887   6655422 1    1123568999997 4332110          00000013478887754  44   233


Q ss_pred             EcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEecc-CCee---EeecccccccCCCcccccCcceeeeeecCC
Q 008927          292 VAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES-NNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGE  367 (548)
Q Consensus       292 l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~-~g~~---~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d  367 (548)
                      +....    .....+.|+|||+++ +++...  ..|++++++ +|+.   ..+. . .....|      ....+.+   +
T Consensus       167 ~~~~~----~~~~gi~~s~dg~~l-v~~~~~--~~i~~~~~~~~g~~~~~~~~~-~-~~~~~p------~~i~~d~---~  228 (296)
T 3e5z_A          167 PIRDR----VKPNGLAFLPSGNLL-VSDTGD--NATHRYCLNARGETEYQGVHF-T-VEPGKT------DGLRVDA---G  228 (296)
T ss_dssp             EECCC----SSEEEEEECTTSCEE-EEETTT--TEEEEEEECSSSCEEEEEEEE-C-CSSSCC------CSEEEBT---T
T ss_pred             eecCC----CCCccEEECCCCCEE-EEeCCC--CeEEEEEECCCCcCcCCCeEe-e-CCCCCC------CeEEECC---C
Confidence            33322    334568999999965 555423  367777765 4554   2222 1 111111      1234432   4


Q ss_pred             CCEEEEEEEeCCeEEEEEEECCCCceEeecCCCceeEee---eecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          368 KNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI---TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       368 ~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~~~---s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      + .|++..  +  ..|+++|+++.....+..+.. +..+   .++++.|++...     ..||+++++++++
T Consensus       229 G-~l~v~~--~--~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~-----~~l~~~~~~~~~~  289 (296)
T 3e5z_A          229 G-LIWASA--G--DGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVS-----TEFWSIETNVRGL  289 (296)
T ss_dssp             S-CEEEEE--T--TEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEET-----TEEEEEECSCCBC
T ss_pred             C-CEEEEc--C--CeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcC-----CeEEEEEcccccc
Confidence            4 465544  3  358889987555556655433 3322   356667766543     3799999877764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.86  E-value=2.4e-07  Score=92.32  Aligned_cols=120  Identities=8%  Similarity=0.011  Sum_probs=70.2

Q ss_pred             eeeEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCC---CceecceeeCCCCCEEEEEEecc---CCCCCCce
Q 008927          148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEP---LVSYADGIFDPRFNRYVTVREDR---RQDALNST  220 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~---~~~~~~~~~SpDG~~i~~v~~~~---~~~~~~~~  220 (548)
                      ..|+++++.+++....++.|+++++.+  ++.. .+.... .+   ......+.|||||+.|++...+.   .+......
T Consensus        48 ~~~s~dg~~~~v~~~~~~~i~~~d~~t--~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  124 (349)
T 1jmx_B           48 AMMAPDNRTAYVLNNHYGDIYGIDLDT--CKNTFHANLSS-VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP  124 (349)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTT--TEEEEEEESCC-STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             eEECCCCCEEEEEeCCCCcEEEEeCCC--CcEEEEEEccc-ccccccccccceEECCCCCEEEEEcccccccccccccCC
Confidence            357777888888887788999999986  5443 332110 00   11135678999999988765431   00000012


Q ss_pred             eEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEec
Q 008927          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS  281 (548)
Q Consensus       221 ~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~  281 (548)
                      ..|+++|+++++..........+.......|||||+ |+ +. .        .+|+++|++
T Consensus       125 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~-~~-~--------~~i~~~d~~  174 (349)
T 1jmx_B          125 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY-VA-G--------PDIYKMDVK  174 (349)
T ss_dssp             CEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE-EE-S--------SSEEEECTT
T ss_pred             CeEEEEECCCccccceeeeccCCCcccceeECCCCc-EE-Ec-c--------CcEEEEeCC
Confidence            589999999865211222223333344566999999 54 43 1        127777765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.86  E-value=5.2e-06  Score=85.14  Aligned_cols=282  Identities=12%  Similarity=0.107  Sum_probs=156.1

Q ss_pred             CceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEEEE
Q 008927           92 GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH  170 (548)
Q Consensus        92 ~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~~  170 (548)
                      ..+.++| |+.++....    +|...+|.....   +........ .+.      .-..|+++++.|+... .++.|.+.
T Consensus        60 ~~~~~s~~g~~l~~~~~----d~~v~i~d~~~~---~~~~~~~~~-~~~------~~~~~~~~~~~l~~~~-~dg~i~iw  124 (420)
T 3vl1_A           60 KGNTFEKVGSHLYKARL----DGHDFLFNTIIR---DGSKMLKRA-DYT------AVDTAKLQMRRFILGT-TEGDIKVL  124 (420)
T ss_dssp             TTCEEEEEETTEEEEEE----TTEEEEEECCSE---ETTTTSCSC-CEE------EEEEECSSSCEEEEEE-TTSCEEEE
T ss_pred             cceeeeecCCeEEEEEc----CCcEEEEEeccc---ceeeEEecC-Cce------EEEEEecCCCEEEEEE-CCCCEEEE
Confidence            3678899 888877653    466667765332   222222111 110      0113555666666654 56778888


Q ss_pred             eCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeE
Q 008927          171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPR  250 (548)
Q Consensus       171 ~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~  250 (548)
                      ++..  ++...+...   ....+..+.|+|||+.|+....+         ..|.++|+.+++.  ...+......+....
T Consensus       125 d~~~--~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~d---------~~i~iwd~~~~~~--~~~~~~h~~~v~~~~  188 (420)
T 3vl1_A          125 DSNF--NLQREIDQA---HVSEITKLKFFPSGEALISSSQD---------MQLKIWSVKDGSN--PRTLIGHRATVTDIA  188 (420)
T ss_dssp             CTTS--CEEEEETTS---SSSCEEEEEECTTSSEEEEEETT---------SEEEEEETTTCCC--CEEEECCSSCEEEEE
T ss_pred             eCCC--cceeeeccc---ccCccEEEEECCCCCEEEEEeCC---------CeEEEEeCCCCcC--ceEEcCCCCcEEEEE
Confidence            8876  555444322   12356678899999987765433         3688999998762  445554455577889


Q ss_pred             ECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCC-C-C------------------cccCCcCceECc
Q 008927          251 MDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD-P-T------------------IVESPTEPKWSS  310 (548)
Q Consensus       251 ~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~-~-~------------------~~~~~~~~~wsp  310 (548)
                      |+|||+.|+....        ...|.+.|+.. ++.  ...+.... . .                  ....+..+.|+|
T Consensus       189 ~~~~~~~l~s~~~--------d~~v~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~  257 (420)
T 3vl1_A          189 IIDRGRNVLSASL--------DGTIRLWECGT-GTT--IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT  257 (420)
T ss_dssp             EETTTTEEEEEET--------TSCEEEEETTT-TEE--EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred             EcCCCCEEEEEcC--------CCcEEEeECCC-Cce--eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence            9999998885542        23577777763 331  12221100 0 0                  003456688999


Q ss_pred             CCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCC
Q 008927          311 KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG  390 (548)
Q Consensus       311 DG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~  390 (548)
                      ||++++.... +|  .|..+|+.+++.......  ....+     .....|.|   +++.++++...++  .|+++|+.+
T Consensus       258 ~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~--~~~~~-----v~~~~~~~---~~~~~l~~g~~dg--~i~vwd~~~  322 (420)
T 3vl1_A          258 YGKYVIAGHV-SG--VITVHNVFSKEQTIQLPS--KFTCS-----CNSLTVDG---NNANYIYAGYENG--MLAQWDLRS  322 (420)
T ss_dssp             TTEEEEEEET-TS--CEEEEETTTCCEEEEECC--TTSSC-----EEEEEECS---SCTTEEEEEETTS--EEEEEETTC
T ss_pred             CCCEEEEEcC-CC--eEEEEECCCCceeEEccc--ccCCC-----ceeEEEeC---CCCCEEEEEeCCC--eEEEEEcCC
Confidence            9995555544 44  366777766654322211  11111     12245554   5653555665555  466678877


Q ss_pred             Cc--eEeecC-CCceeEee-eecCCEEEEEEecCCCCCeEEEEEcCCC
Q 008927          391 HS--LSLLDI-PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDH  434 (548)
Q Consensus       391 g~--~~~l~~-~~~~~~~~-s~d~~~l~~~~ss~~~p~~l~~~d~~~~  434 (548)
                      ++  +..+.. ....+..+ .+++ .++++++.   -..|.++++...
T Consensus       323 ~~~~~~~~~~~~~~~v~~~~~~~~-~~l~s~~~---d~~v~iw~~~~~  366 (420)
T 3vl1_A          323 PECPVGEFLINEGTPINNVYFAAG-ALFVSSGF---DTSIKLDIISDP  366 (420)
T ss_dssp             TTSCSEEEEESTTSCEEEEEEETT-EEEEEETT---TEEEEEEEECCT
T ss_pred             CcCchhhhhccCCCCceEEEeCCC-CEEEEecC---CccEEEEeccCC
Confidence            64  344443 22334444 4444 44444432   356777776553

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.85  E-value=9.7e-07  Score=86.91  Aligned_cols=228  Identities=12%  Similarity=0.162  Sum_probs=129.6

Q ss_pred             CeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       147 g~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      |..|.++++.|+|++...++|+++++++  ++.+.+...     .....+.++|||+.++.  ..         ..|+++
T Consensus        17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~--~~~~~~~~~-----~~~~~i~~~~dG~l~v~--~~---------~~l~~~   78 (297)
T 3g4e_A           17 SPVWEEVSNSLLFVDIPAKKVCRWDSFT--KQVQRVTMD-----APVSSVALRQSGGYVAT--IG---------TKFCAL   78 (297)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTT--CCEEEEECS-----SCEEEEEEBTTSSEEEE--ET---------TEEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCC--CcEEEEeCC-----CceEEEEECCCCCEEEE--EC---------CeEEEE
Confidence            4578877889999998888999999987  555444322     23556789999994333  22         369999


Q ss_pred             ECCCCCccCcEEeeecC-----CceeeeEECCCCCEEEEEEecCCCC----CCCCceEEEEEecCCCceeeeEEEcCCCC
Q 008927          227 ALNGQNIQEPKVLVSGS-----DFYAFPRMDPRGERMAWIEWHHPNM----PWDKAELWVGYISENGDVYKRVCVAGFDP  297 (548)
Q Consensus       227 dl~~g~~~~~~~L~~~~-----~~~~~p~~SPDGk~La~~~~~~~~~----p~~~~~L~v~~~~~~g~~~~~~~l~~~~~  297 (548)
                      |+++++   .+.+....     .......++|||+ |.+..+.....    .-....||.++.+  |++  .......  
T Consensus        79 d~~~g~---~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~--g~~--~~~~~~~--  148 (297)
T 3g4e_A           79 NWKEQS---AVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD--HHV--KKYFDQV--  148 (297)
T ss_dssp             ETTTTE---EEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT--SCE--EEEEEEE--
T ss_pred             ECCCCc---EEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC--CCE--EEEeecc--
Confidence            999887   66665321     1234567999998 44444322110    0123467777653  442  1222221  


Q ss_pred             CcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEec--cCCeeE--e-ecccccccCCCcccccCcceeeeeecCCCCEE
Q 008927          298 TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE--SNNEVL--A-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLI  371 (548)
Q Consensus       298 ~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~--~~g~~~--~-l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l  371 (548)
                         .....+.|+|||+ ||+.... .+  .|++++.  ++|+..  + +.........|      ....+.+   + +.|
T Consensus       149 ---~~pngi~~spdg~~lyv~~~~-~~--~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p------~g~~~d~---~-G~l  212 (297)
T 3g4e_A          149 ---DISNGLDWSLDHKIFYYIDSL-SY--SVDAFDYDLQTGQISNRRSVYKLEKEEQIP------DGMCIDA---E-GKL  212 (297)
T ss_dssp             ---SBEEEEEECTTSCEEEEEEGG-GT--EEEEEEECTTTCCEEEEEEEEECCGGGCEE------EEEEEBT---T-SCE
T ss_pred             ---ccccceEEcCCCCEEEEecCC-CC--cEEEEeccCCCCcccCcEEEEECCCCCCCC------CeeEECC---C-CCE
Confidence               2235689999999 5554433 33  4666654  566542  1 21110000111      1133431   4 456


Q ss_pred             EEEEEeCCeEEEEEEECCCCce-EeecCCCceeEee--e-ecCCEEEEEEecC
Q 008927          372 ACSYRQNGRSYLGILDDFGHSL-SLLDIPFTDIDNI--T-LGNDCLFVEGASG  420 (548)
Q Consensus       372 ~~~~~~~g~~~L~~~dl~~g~~-~~l~~~~~~~~~~--s-~d~~~l~~~~ss~  420 (548)
                      ++....+  ..|+++|+++|+. ..+..+...+..+  . ++++.||++....
T Consensus       213 wva~~~~--~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          213 WVACYNG--GRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             EEEEETT--TEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             EEEEcCC--CEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            5544333  3588999987764 4555553333333  4 6778888777643

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.85  E-value=7e-07  Score=95.96  Aligned_cols=213  Identities=13%  Similarity=0.124  Sum_probs=124.2

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +|++++..|+... .++.|.+.+..+  .....+...    ...+..+.|+|||+.|+....+         ..|.++|.
T Consensus       351 ~~s~~g~~l~~~~-~dg~v~~~~~~~--~~~~~~~~~----~~~v~~~~~s~dg~~l~~~~~d---------~~v~~~~~  414 (577)
T 2ymu_A          351 AFSPDGQTIASAS-DDKTVKLWNRNG--QLLQTLTGH----SSSVRGVAFSPDGQTIASASDD---------KTVKLWNR  414 (577)
T ss_dssp             EECTTSSEEEEEE-TTSEEEEEETTC--CEEEEEECC----SSCEEEEEECTTSSCEEEEETT---------SEEEEECT
T ss_pred             EECCCCCEEEEEe-CCCEEEEEcCCC--CEEEEecCC----CCCeEEEEECCCCCEEEEEeCC---------CEEEEEeC
Confidence            4666777776654 456777777664  334455443    2345667899999988775433         35777786


Q ss_pred             CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      .+..   .+.+......+....||||++.|+....        ...|.+.+++  ++  ....+.+..    ..+....|
T Consensus       415 ~~~~---~~~~~~~~~~v~~~~~s~d~~~l~~~~~--------d~~v~~w~~~--~~--~~~~~~~~~----~~v~~~~~  475 (577)
T 2ymu_A          415 NGQL---LQTLTGHSSSVWGVAFSPDDQTIASASD--------DKTVKLWNRN--GQ--LLQTLTGHS----SSVRGVAF  475 (577)
T ss_dssp             TCCE---EEEEECCSSCEEEEEECTTSSEEEEEET--------TSEEEEEETT--SC--EEEEEECCS----SCEEEEEE
T ss_pred             CCCE---EEEecCCCCCeEEEEECCCCCEEEEEcC--------CCEEEEEECC--CC--EEEEEcCCC----CCEEEEEE
Confidence            5543   4555544455667789999999885542        3467888865  33  233444433    45677899


Q ss_pred             CcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEEC
Q 008927          309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (548)
Q Consensus       309 spDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl  388 (548)
                      +|||++++.... ++  .|..++..+...+.+.....         ......|+|   +++.| ++...++.  |.++|.
T Consensus       476 spd~~~las~~~-d~--~i~iw~~~~~~~~~~~~h~~---------~v~~l~~s~---dg~~l-~s~~~dg~--v~lwd~  537 (577)
T 2ymu_A          476 SPDGQTIASASD-DK--TVKLWNRNGQLLQTLTGHSS---------SVRGVAFSP---DGQTI-ASASDDKT--VKLWNR  537 (577)
T ss_dssp             CTTSCEEEEEET-TS--EEEEEETTSCEEEEEECCSS---------CEEEEEECT---TSSCE-EEEETTSE--EEEECT
T ss_pred             cCCCCEEEEEeC-CC--EEEEEcCCCCEEEEEeCCCC---------CEEEEEEcC---CCCEE-EEEECcCE--EEEEeC
Confidence            999995555444 44  45666764433444432111         112245654   66555 45555664  555676


Q ss_pred             CCCceEeecCCCceeEee--eecCCEEE
Q 008927          389 FGHSLSLLDIPFTDIDNI--TLGNDCLF  414 (548)
Q Consensus       389 ~~g~~~~l~~~~~~~~~~--s~d~~~l~  414 (548)
                      .+..+..+......+..+  ++|++.|+
T Consensus       538 ~~~~~~~~~~h~~~v~~~~fs~dg~~l~  565 (577)
T 2ymu_A          538 NGQLLQTLTGHSSSVWGVAFSPDGQTIA  565 (577)
T ss_dssp             TSCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred             CCCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            544445554433345444  67777654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.85  E-value=3.7e-07  Score=95.44  Aligned_cols=252  Identities=8%  Similarity=0.053  Sum_probs=141.3

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCC--CCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSID--SKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~--~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      +|++++..|+++...++.|.+.++.  +  ++. +.+....  .......+.|+|||+.|+....+         ..++.
T Consensus       109 ~~s~d~~~l~~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~~---------g~v~~  175 (450)
T 2vdu_B          109 RLTSDESRLIACADSDKSLLVFDVDKTS--KNVLKLRKRFC--FSKRPNAISIAEDDTTVIIADKF---------GDVYS  175 (450)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEEECSSS--SSCEEEEEEEE--CSSCEEEEEECTTSSEEEEEETT---------SEEEE
T ss_pred             EEcCCCCEEEEEECCCCeEEEEECcCCC--Cceeeeeeccc--CCCCceEEEEcCCCCEEEEEeCC---------CcEEE
Confidence            5777888887777667766666665  4  333 4443110  01345678899999988775322         46899


Q ss_pred             EECCCCCcc--CcEEeeecCCceeeeEECCC---CCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEE-EcCCCCCc
Q 008927          226 IALNGQNIQ--EPKVLVSGSDFYAFPRMDPR---GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-VAGFDPTI  299 (548)
Q Consensus       226 idl~~g~~~--~~~~L~~~~~~~~~p~~SPD---Gk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~-l~~~~~~~  299 (548)
                      +++.+++..  ....+......+....|+||   |+.|+....        ...|++.++.. ++.  ... +.+..   
T Consensus       176 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~--------d~~i~vwd~~~-~~~--~~~~~~~h~---  241 (450)
T 2vdu_B          176 IDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR--------DEHIKISHYPQ-CFI--VDKWLFGHK---  241 (450)
T ss_dssp             EETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET--------TSCEEEEEESC-TTC--EEEECCCCS---
T ss_pred             EecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC--------CCcEEEEECCC-Cce--eeeeecCCC---
Confidence            999887621  01133433445667799999   887764442        24688889874 431  222 33332   


Q ss_pred             ccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeeccccc---ccC--------------CCcccccCcceeee
Q 008927          300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA---EFS--------------RPLWVFGINSYEII  362 (548)
Q Consensus       300 ~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~---d~~--------------~p~w~~~~~~~~~~  362 (548)
                       ..+..+.|+ ||++++.... ++  .|.++|+.+++.........   .+.              ..........+.+.
T Consensus       242 -~~v~~~~~s-d~~~l~s~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  316 (450)
T 2vdu_B          242 -HFVSSICCG-KDYLLLSAGG-DD--KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS  316 (450)
T ss_dssp             -SCEEEEEEC-STTEEEEEES-SS--EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred             -CceEEEEEC-CCCEEEEEeC-CC--eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence             457788999 9995555443 33  57778887877533221100   000              00011122234555


Q ss_pred             eecCCCCEEEEEEEeCCeEEEEEE-ECCCCceEe---ecCCCceeEeeeecCCEEEEEEecCCCCC------eEEEEEcC
Q 008927          363 QSHGEKNLIACSYRQNGRSYLGIL-DDFGHSLSL---LDIPFTDIDNITLGNDCLFVEGASGVEPS------SVAKVTLD  432 (548)
Q Consensus       363 ~~~~d~~~l~~~~~~~g~~~L~~~-dl~~g~~~~---l~~~~~~~~~~s~d~~~l~~~~ss~~~p~------~l~~~d~~  432 (548)
                      |   +++.|++....++.-.||.+ +...+.++.   +..+ ..+..+....+.+++...+...+.      .+|.++.+
T Consensus       317 ~---~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          317 K---NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             S---SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             C---CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence            4   66666655435555555555 223333332   3333 334455333355666666655554      88888877


Q ss_pred             CCce
Q 008927          433 DHKL  436 (548)
Q Consensus       433 ~~~~  436 (548)
                      ++++
T Consensus       393 ~~~~  396 (450)
T 2vdu_B          393 ENSF  396 (450)
T ss_dssp             TTEE
T ss_pred             CCeE
Confidence            7654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.84  E-value=4.2e-07  Score=89.12  Aligned_cols=251  Identities=10%  Similarity=0.018  Sum_probs=141.2

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L  167 (548)
                      .....|.++| |+.++|+...   .+  .|++++..+  ..+.+......+       -+..+.++| .|+.....++.|
T Consensus        28 ~~~eg~~~d~~g~~l~~~~~~---~~--~i~~~~~~~--~~~~~~~~~~~~-------~~l~~~~dg-~l~v~~~~~~~i   92 (296)
T 3e5z_A           28 TWTEGPVYVPARSAVIFSDVR---QN--RTWAWSDDG--QLSPEMHPSHHQ-------NGHCLNKQG-HLIACSHGLRRL   92 (296)
T ss_dssp             SSEEEEEEEGGGTEEEEEEGG---GT--EEEEEETTS--CEEEEESSCSSE-------EEEEECTTC-CEEEEETTTTEE
T ss_pred             ccccCCeEeCCCCEEEEEeCC---CC--EEEEEECCC--CeEEEECCCCCc-------ceeeECCCC-cEEEEecCCCeE
Confidence            4556799999 7779999743   23  355555542  233332211000       011233333 466666556789


Q ss_pred             EEEeCCCCCCCceecCCCCCCC-CceecceeeCCCCCEEEEEEec-c--------CCCCCCceeEEEEEECCCCCccCcE
Q 008927          168 YKHSIDSKDSSPLPITPDYGEP-LVSYADGIFDPRFNRYVTVRED-R--------RQDALNSTTEIVAIALNGQNIQEPK  237 (548)
Q Consensus       168 y~~~~~~~~~~~~~lT~~~~~~-~~~~~~~~~SpDG~~i~~v~~~-~--------~~~~~~~~~~l~~idl~~g~~~~~~  237 (548)
                      +++++..  ++.+.+....... .....++.++|||+. ++.... .        ..........||.++.+ ++   .+
T Consensus        93 ~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~d~~G~l-~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~---~~  165 (296)
T 3e5z_A           93 ERQREPG--GEWESIADSFEGKKLNSPNDVCLAPDGSL-WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT---LS  165 (296)
T ss_dssp             EEECSTT--CCEEEEECEETTEECCCCCCEEECTTSCE-EEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC---EE
T ss_pred             EEEcCCC--CcEEEEeeccCCCCCCCCCCEEECCCCCE-EEECCccccccccccccccccCCCcEEEEECCC-CC---EE
Confidence            9999865  5666554321000 113456889999974 332110 0        00000113589999988 65   56


Q ss_pred             EeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCce-eeeEEEcCCCCCcccCCcCceECcCCcEEE
Q 008927          238 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVESPTEPKWSSKGELFF  316 (548)
Q Consensus       238 ~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~-~~~~~l~~~~~~~~~~~~~~~wspDG~L~~  316 (548)
                      .+...........|||||+.| +...       ....|++++++.+|++ ...+.+ ... .  .....+.+++||+||+
T Consensus       166 ~~~~~~~~~~gi~~s~dg~~l-v~~~-------~~~~i~~~~~~~~g~~~~~~~~~-~~~-~--~~p~~i~~d~~G~l~v  233 (296)
T 3e5z_A          166 APIRDRVKPNGLAFLPSGNLL-VSDT-------GDNATHRYCLNARGETEYQGVHF-TVE-P--GKTDGLRVDAGGLIWA  233 (296)
T ss_dssp             EEECCCSSEEEEEECTTSCEE-EEET-------TTTEEEEEEECSSSCEEEEEEEE-CCS-S--SCCCSEEEBTTSCEEE
T ss_pred             EeecCCCCCccEEECCCCCEE-EEeC-------CCCeEEEEEECCCCcCcCCCeEe-eCC-C--CCCCeEEECCCCCEEE
Confidence            665554445667899999988 5542       1357999998745654 333444 211 1  3456788999999776


Q ss_pred             EEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE
Q 008927          317 VTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS  394 (548)
Q Consensus       317 ~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~  394 (548)
                      .. .    ..|+++++++.....+.....    +      ....+.  .++++.|+++. .   ..|+++++.+++++
T Consensus       234 ~~-~----~~v~~~~~~g~~~~~~~~~~~----~------~~~~f~--~~d~~~L~v~t-~---~~l~~~~~~~~~~~  290 (296)
T 3e5z_A          234 SA-G----DGVHVLTPDGDELGRVLTPQT----T------SNLCFG--GPEGRTLYMTV-S---TEFWSIETNVRGLE  290 (296)
T ss_dssp             EE-T----TEEEEECTTSCEEEEEECSSC----C------CEEEEE--STTSCEEEEEE-T---TEEEEEECSCCBCC
T ss_pred             Ec-C----CeEEEECCCCCEEEEEECCCC----c------eeEEEE--CCCCCEEEEEc-C---CeEEEEEccccccc
Confidence            66 2    258899986444444431110    1      123332  01556676554 2   26899998877654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.80  E-value=2.4e-06  Score=91.78  Aligned_cols=250  Identities=10%  Similarity=0.004  Sum_probs=138.8

Q ss_pred             eeEE----ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCC--------CCCceecceeeCCCCCEEEEEEeccCCCC
Q 008927          149 AFRI----FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG--------EPLVSYADGIFDPRFNRYVTVREDRRQDA  216 (548)
Q Consensus       149 ~~~~----~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~--------~~~~~~~~~~~SpDG~~i~~v~~~~~~~~  216 (548)
                      +|++    +|+.|+..+..++.|.++|..+  +++.+......        .+..+.....+|||++.+++....     
T Consensus       228 a~sp~~~~dg~~l~v~~~~~~~v~v~D~~t--~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-----  300 (543)
T 1nir_A          228 ESSKFKGYEDRYTIAGAYWPPQFAIMDGET--LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-----  300 (543)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTT--CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-----
T ss_pred             EeCCCcCCCCCEEEEEEccCCeEEEEeccc--cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC-----
Confidence            5777    8888877776678899999876  55533221100        001145567899999876554221     


Q ss_pred             CCceeEEEEEECCCCCccCcE--EeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcC
Q 008927          217 LNSTTEIVAIALNGQNIQEPK--VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG  294 (548)
Q Consensus       217 ~~~~~~l~~idl~~g~~~~~~--~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~  294 (548)
                         ...|+++|+.+++.  ..  .+. ...+.....|||||++|+ ++...      ...|.++|+++ +++.  ..+..
T Consensus       301 ---~g~i~vvd~~~~~~--l~~~~i~-~~~~~~~~~~spdg~~l~-va~~~------~~~v~v~D~~t-g~l~--~~i~~  364 (543)
T 1nir_A          301 ---TGKVLLVNYKDIDN--LTVTSIG-AAPFLHDGGWDSSHRYFM-TAANN------SNKVAVIDSKD-RRLS--ALVDV  364 (543)
T ss_dssp             ---TTEEEEEECTTSSS--CEEEEEE-CCSSCCCEEECTTSCEEE-EEEGG------GTEEEEEETTT-TEEE--EEEEC
T ss_pred             ---CCeEEEEEecCCCc--ceeEEec-cCcCccCceECCCCCEEE-EEecC------CCeEEEEECCC-CeEE--Eeecc
Confidence               24799999988651  22  222 233455668999999875 44222      35789999884 6532  22322


Q ss_pred             CCCCcccCCcCce-ECcCCc-EEEEEeCCCCeeeEEEEeccC-------CeeEeecccccccCCCcccccCcceeeeeec
Q 008927          295 FDPTIVESPTEPK-WSSKGE-LFFVTDRKNGFWNLHKWIESN-------NEVLAIYSLDAEFSRPLWVFGINSYEIIQSH  365 (548)
Q Consensus       295 ~~~~~~~~~~~~~-wspDG~-L~~~sd~~~g~~~Ly~~d~~~-------g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~  365 (548)
                      ....  ....... ++||+. +|+....+++  .|-+++.++       .+..+..+..   +...+     ...+.|  
T Consensus       365 g~~p--h~g~g~~~~~p~~g~~~~s~~~~d~--~V~v~d~~~~~~~~~~~~~v~~l~~~---g~~~~-----~v~~~p--  430 (543)
T 1nir_A          365 GKTP--HPGRGANFVHPKYGPVWSTSHLGDG--SISLIGTDPKNHPQYAWKKVAELQGQ---GGGSL-----FIKTHP--  430 (543)
T ss_dssp             SSSB--CCTTCEEEEETTTEEEEEEEBSSSS--EEEEEECCTTTCTTTBTSEEEEEECS---CSCCC-----CEECCT--
T ss_pred             CCCC--CCCCCcccCCCCCccEEEeccCCCc--eEEEEEeCCCCCchhcCeEEEEEEcC---CCCce-----EEEcCC--
Confidence            1100  1111223 368855 6554433233  466666655       3332222111   01111     133443  


Q ss_pred             CCCCEEEEEEE--eC--CeEEEEEEECCCCceE--eec--------CCCceeEe--eeecCCEEEEEEecC-CCCCeEEE
Q 008927          366 GEKNLIACSYR--QN--GRSYLGILDDFGHSLS--LLD--------IPFTDIDN--ITLGNDCLFVEGASG-VEPSSVAK  428 (548)
Q Consensus       366 ~d~~~l~~~~~--~~--g~~~L~~~dl~~g~~~--~l~--------~~~~~~~~--~s~d~~~l~~~~ss~-~~p~~l~~  428 (548)
                       +++.|+....  .+  ....|.++|+++++..  .|.        .+...+..  ++++|+.+++..-+. .....|.+
T Consensus       431 -dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v  509 (543)
T 1nir_A          431 -KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV  509 (543)
T ss_dssp             -TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEE
T ss_pred             -CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEE
Confidence             7777765431  11  1347889999887643  331        11122222  378999988876432 34689999


Q ss_pred             EEcCCCce
Q 008927          429 VTLDDHKL  436 (548)
Q Consensus       429 ~d~~~~~~  436 (548)
                      +|.++++.
T Consensus       510 ~D~~t~~~  517 (543)
T 1nir_A          510 VDDKTLKL  517 (543)
T ss_dssp             EETTTTEE
T ss_pred             EECCCceE
Confidence            99988875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.78  E-value=4e-06  Score=85.58  Aligned_cols=252  Identities=7%  Similarity=-0.038  Sum_probs=137.9

Q ss_pred             CeeeEEECCEEEEEeC---------CCCeEEEEeCCCCCCCce-ecCCC-CCCC--CceecceeeCCCCCEEEEEEeccC
Q 008927          147 GGAFRIFGDTVIFSNY---------KDQRLYKHSIDSKDSSPL-PITPD-YGEP--LVSYADGIFDPRFNRYVTVREDRR  213 (548)
Q Consensus       147 g~~~~~~~~~i~F~~~---------~~~~Ly~~~~~~~~~~~~-~lT~~-~~~~--~~~~~~~~~SpDG~~i~~v~~~~~  213 (548)
                      +..++||++.||..+.         .++.|.++|+.+  .+.. .+... ....  ...-..+.|||||++|++..... 
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t--~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~-  146 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT--FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA-  146 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC--CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC-
Confidence            4578899999999863         245788999875  3332 22111 0000  00123578999999987753321 


Q ss_pred             CCCCCceeEEEEEECCCCCccCcEEe-eecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEE-
Q 008927          214 QDALNSTTEIVAIALNGQNIQEPKVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-  291 (548)
Q Consensus       214 ~~~~~~~~~l~~idl~~g~~~~~~~L-~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~-  291 (548)
                            .+.|.++| ++++   .... ..-...   ..+.|+|++.++.. . +     ...+.+++. . ++...... 
T Consensus       147 ------~~~v~viD-~t~~---~~~~~i~~~~~---~~~~~~~~~~~~~~-~-~-----dg~~~~vd~-~-g~~~~~~~~  204 (373)
T 2mad_H          147 ------GPAVGLVV-QGGS---SDDQLLSSPTC---YHIHPGAPSTFYLL-C-A-----QGGLAKTDH-A-GGAAGAGLV  204 (373)
T ss_pred             ------CCeEEEEE-CCCC---EEeEEcCCCce---EEEEeCCCceEEEE-c-C-----CCCEEEEEC-C-CcEEEEEec
Confidence                  25799999 9887   3322 322222   34567777654332 1 1     234566666 3 33211100 


Q ss_pred             ---EcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeeccc---ccccCCCcccccCc-ceeeee
Q 008927          292 ---VAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSL---DAEFSRPLWVFGIN-SYEIIQ  363 (548)
Q Consensus       292 ---l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~---~~d~~~p~w~~~~~-~~~~~~  363 (548)
                         ..+..    .....+.+++++. ++|++..  +  .++.+|..++..+.+...   ........|..+.. .+.+.+
T Consensus       205 ~~~~~~~~----p~~~~~~~~~~~~~~~~~~~~--~--~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~  276 (373)
T 2mad_H          205 GAMLTAAQ----NLLTQPAQANKSGRIVWPVYS--G--KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK  276 (373)
T ss_pred             cccccCCc----ceeecceeEecCCEEEEEcCC--c--eEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC
Confidence               11111    1123467788877 7877743  3  799999876643322210   00001123333221 133443


Q ss_pred             ecCCCCEEEEEEEeC-------CeEEEEEEECCCCce-EeecCCCcee-EeeeecCCEEEEEEecCCCCCeEEEEEcCCC
Q 008927          364 SHGEKNLIACSYRQN-------GRSYLGILDDFGHSL-SLLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDH  434 (548)
Q Consensus       364 ~~~d~~~l~~~~~~~-------g~~~L~~~dl~~g~~-~~l~~~~~~~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~  434 (548)
                         ++++||......       ....|+++|++++++ +.+..+.... -.+++|++.++++.+.  ....|.++|++++
T Consensus       277 ---d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~--~~~~V~ViD~~t~  351 (373)
T 2mad_H          277 ---SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA--GTEVLHIYDAGAG  351 (373)
T ss_pred             ---CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcC--CCCeEEEEECCCC
Confidence               778887765421       235799999998876 5665433211 1347888866666542  2368999999887


Q ss_pred             ce
Q 008927          435 KL  436 (548)
Q Consensus       435 ~~  436 (548)
                      +.
T Consensus       352 ~v  353 (373)
T 2mad_H          352 DQ  353 (373)
T ss_pred             CE
Confidence            64

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.76  E-value=3.6e-06  Score=84.83  Aligned_cols=239  Identities=10%  Similarity=-0.004  Sum_probs=131.5

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      +|+++ +.|+ +...++.|.+.++..  ++. ..+..........+..+.|+|||+.|+....+         ..|.++|
T Consensus        89 ~~s~d-~~l~-~~s~dg~v~lWd~~~--~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d---------~~i~iwd  155 (344)
T 4gqb_B           89 TWVGE-RGIL-VASDSGAVELWELDE--NETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD---------ICIKVWD  155 (344)
T ss_dssp             EEETT-TEEE-EEETTSEEEEEEECT--TSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT---------SCEEEEE
T ss_pred             EEeCC-CeEE-EEECCCEEEEEeccC--CCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC---------CeEEEEE
Confidence            45544 3454 334567666667765  332 22210000001235677899999988775433         3588889


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      +.+++.  .+.+....+.+....|+||++.++.....       ...|.+.|+.. ++.  ...+......  ..+....
T Consensus       156 ~~~~~~--~~~~~~h~~~V~~~~~~~~~~~~l~s~s~-------D~~v~iwd~~~-~~~--~~~~~~~~~~--~~~~~~~  221 (344)
T 4gqb_B          156 LAQQVV--LSSYRAHAAQVTCVAASPHKDSVFLSCSE-------DNRILLWDTRC-PKP--ASQIGCSAPG--YLPTSLA  221 (344)
T ss_dssp             TTTTEE--EEEECCCSSCEEEEEECSSCTTEEEEEET-------TSCEEEEETTS-SSC--EEECC----C--CCEEEEE
T ss_pred             CCCCcE--EEEEcCcCCceEEEEecCCCCCceeeecc-------ccccccccccc-cce--eeeeecceee--ccceeee
Confidence            998871  23333334456777899999866534321       24588889874 431  2222211101  3456788


Q ss_pred             ECcCCc-EEEEEeCCCCeeeEEEEeccCCeeE-eecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927          308 WSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (548)
Q Consensus       308 wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~-~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~  385 (548)
                      |+|++. +++.... +|  .|.++|+.+++.. .+...    .  ..   .....|.|   ++..++++...++.  |++
T Consensus       222 ~~p~~~~~l~sg~~-dg--~v~~wd~~~~~~~~~~~~h----~--~~---v~~v~fsp---~g~~~lasgs~D~~--i~v  284 (344)
T 4gqb_B          222 WHPQQSEVFVFGDE-NG--TVSLVDTKSTSCVLSSAVH----S--QC---VTGLVFSP---HSVPFLASLSEDCS--LAV  284 (344)
T ss_dssp             ECSSCTTEEEEEET-TS--EEEEEESCC--CCEEEECC----S--SC---EEEEEECS---SSSCCEEEEETTSC--EEE
T ss_pred             ecCCCCcceEEecc-CC--cEEEEECCCCcEEEEEcCC----C--CC---EEEEEEcc---CCCeEEEEEeCCCe--EEE
Confidence            999766 7666554 44  4666787776542 23211    1  11   12245654   66666666666665  556


Q ss_pred             EECCCCceEeecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCC
Q 008927          386 LDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDH  434 (548)
Q Consensus       386 ~dl~~g~~~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~  434 (548)
                      +|+.++++..+......+..+  +++++.+++.++..   ..|.+.++.+.
T Consensus       285 wd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D---~~v~~w~v~~~  332 (344)
T 4gqb_B          285 LDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWD---HQVVHHVVPTE  332 (344)
T ss_dssp             ECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETT---SCEEEEECCC-
T ss_pred             EECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCC---CeEEEEECCCC
Confidence            688888766554333345554  67887776666532   35666666443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.76  E-value=3.9e-06  Score=90.03  Aligned_cols=227  Identities=13%  Similarity=0.130  Sum_probs=130.6

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +|++++..|+... .++.|.+.++++  ...+.+...    ........++|||+.|+....+         ..|.++|.
T Consensus       310 ~~~~~~~~l~t~~-~d~~i~~w~~~~--~~~~~~~~~----~~~v~~~~~s~~g~~l~~~~~d---------g~v~~~~~  373 (577)
T 2ymu_A          310 AFSPDGQTIASAS-DDKTVKLWNRNG--QHLQTLTGH----SSSVWGVAFSPDGQTIASASDD---------KTVKLWNR  373 (577)
T ss_dssp             EECTTSSEEEEEE-TTSCEEEEETTS--CEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEEEET
T ss_pred             EECCCCCEEEEEe-CCCeEEEEeCCC--CeeEEEeCC----CCCEEEEEECCCCCEEEEEeCC---------CEEEEEcC
Confidence            4556666665544 456666667765  555555543    2245567899999998775433         25667776


Q ss_pred             CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      .+..   ...+......+....|||||++|+....        ...|.+.+..  ++.  ...+.+..    ..+....|
T Consensus       374 ~~~~---~~~~~~~~~~v~~~~~s~dg~~l~~~~~--------d~~v~~~~~~--~~~--~~~~~~~~----~~v~~~~~  434 (577)
T 2ymu_A          374 NGQL---LQTLTGHSSSVRGVAFSPDGQTIASASD--------DKTVKLWNRN--GQL--LQTLTGHS----SSVWGVAF  434 (577)
T ss_dssp             TCCE---EEEEECCSSCEEEEEECTTSSCEEEEET--------TSEEEEECTT--CCE--EEEEECCS----SCEEEEEE
T ss_pred             CCCE---EEEecCCCCCeEEEEECCCCCEEEEEeC--------CCEEEEEeCC--CCE--EEEecCCC----CCeEEEEE
Confidence            5544   4455544445667789999999885542        2467777754  332  33344433    45677899


Q ss_pred             CcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEEC
Q 008927          309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (548)
Q Consensus       309 spDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl  388 (548)
                      +||+++++.... ++  .|..+++.+...+.+.....    +     .....+.|   +++.| ++...++.  |.+.|.
T Consensus       435 s~d~~~l~~~~~-d~--~v~~w~~~~~~~~~~~~~~~----~-----v~~~~~sp---d~~~l-as~~~d~~--i~iw~~  496 (577)
T 2ymu_A          435 SPDDQTIASASD-DK--TVKLWNRNGQLLQTLTGHSS----S-----VRGVAFSP---DGQTI-ASASDDKT--VKLWNR  496 (577)
T ss_dssp             CTTSSEEEEEET-TS--EEEEEETTSCEEEEEECCSS----C-----EEEEEECT---TSCEE-EEEETTSE--EEEEET
T ss_pred             CCCCCEEEEEcC-CC--EEEEEECCCCEEEEEcCCCC----C-----EEEEEEcC---CCCEE-EEEeCCCE--EEEEcC
Confidence            999995555443 44  45566765544444432111    1     11244554   55544 45555554  555676


Q ss_pred             CCCceEeecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 008927          389 FGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLD  432 (548)
Q Consensus       389 ~~g~~~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~  432 (548)
                      .+..++.+......+..+  +++++.|+ .++.   -..|.++|..
T Consensus       497 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~-s~~~---dg~v~lwd~~  538 (577)
T 2ymu_A          497 NGQLLQTLTGHSSSVRGVAFSPDGQTIA-SASD---DKTVKLWNRN  538 (577)
T ss_dssp             TSCEEEEEECCSSCEEEEEECTTSSCEE-EEET---TSEEEEECTT
T ss_pred             CCCEEEEEeCCCCCEEEEEEcCCCCEEE-EEEC---cCEEEEEeCC
Confidence            544455555433445544  67777654 3332   2467788864

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.72  E-value=2.4e-06  Score=84.02  Aligned_cols=215  Identities=10%  Similarity=0.051  Sum_probs=121.1

Q ss_pred             ccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEE
Q 008927           90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY  168 (548)
Q Consensus        90 ~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly  168 (548)
                      -...|.|+| ++.+||+...   .+  .|++++..+ +..+.+...     ..+   ++..+.++|+ |+...  +..|+
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~---~~--~i~~~d~~~-~~~~~~~~~-----~~~---~~i~~~~dG~-l~v~~--~~~l~   76 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIP---AK--KVCRWDSFT-KQVQRVTMD-----APV---SSVALRQSGG-YVATI--GTKFC   76 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETT---TT--EEEEEETTT-CCEEEEECS-----SCE---EEEEEBTTSS-EEEEE--TTEEE
T ss_pred             cccCCeEECCCCEEEEEECC---CC--EEEEEECCC-CcEEEEeCC-----Cce---EEEEECCCCC-EEEEE--CCeEE
Confidence            345789999 8899998743   23  466665542 223222111     111   1123444455 55544  46899


Q ss_pred             EEeCCCCCCCceecCCCCC-CCCceecceeeCCCCCEEEEEEeccCCC---CCCceeEEEEEECCCCCccCcEEeeecCC
Q 008927          169 KHSIDSKDSSPLPITPDYG-EPLVSYADGIFDPRFNRYVTVREDRRQD---ALNSTTEIVAIALNGQNIQEPKVLVSGSD  244 (548)
Q Consensus       169 ~~~~~~~~~~~~~lT~~~~-~~~~~~~~~~~SpDG~~i~~v~~~~~~~---~~~~~~~l~~idl~~g~~~~~~~L~~~~~  244 (548)
                      ++++++  ++.+.+..... ....+..+..++|||+. ++........   .......||+++.++ +   ...+.....
T Consensus        77 ~~d~~~--g~~~~~~~~~~~~~~~~~~di~~d~dG~l-~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~---~~~~~~~~~  149 (297)
T 3g4e_A           77 ALNWKE--QSAVVLATVDNDKKNNRFNDGKVDPAGRY-FAGTMAEETAPAVLERHQGALYSLFPDH-H---VKKYFDQVD  149 (297)
T ss_dssp             EEETTT--TEEEEEEECCTTCSSEEEEEEEECTTSCE-EEEEEECCSBTTBCCTTCEEEEEECTTS-C---EEEEEEEES
T ss_pred             EEECCC--CcEEEEEecCCCCCCCCCCCEEECCCCCE-EEecCCcccccccccCCCcEEEEEECCC-C---EEEEeeccc
Confidence            999986  55555543211 11245677889999984 4432211100   001346899999864 4   445544433


Q ss_pred             ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEec-CCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCC
Q 008927          245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG  323 (548)
Q Consensus       245 ~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~-~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g  323 (548)
                      .-....|||||+.|++....       ...|++++++ .+|.+...+.+.... ..........+++||+||+.... . 
T Consensus       150 ~pngi~~spdg~~lyv~~~~-------~~~i~~~~~d~~~G~~~~~~~~~~~~-~~~~~p~g~~~d~~G~lwva~~~-~-  219 (297)
T 3g4e_A          150 ISNGLDWSLDHKIFYYIDSL-------SYSVDAFDYDLQTGQISNRRSVYKLE-KEEQIPDGMCIDAEGKLWVACYN-G-  219 (297)
T ss_dssp             BEEEEEECTTSCEEEEEEGG-------GTEEEEEEECTTTCCEEEEEEEEECC-GGGCEEEEEEEBTTSCEEEEEET-T-
T ss_pred             cccceEEcCCCCEEEEecCC-------CCcEEEEeccCCCCcccCcEEEEECC-CCCCCCCeeEECCCCCEEEEEcC-C-
Confidence            44567899999988765421       3579999985 356543333332211 00022345678899987666543 2 


Q ss_pred             eeeEEEEeccCCeeEe
Q 008927          324 FWNLHKWIESNNEVLA  339 (548)
Q Consensus       324 ~~~Ly~~d~~~g~~~~  339 (548)
                       ..|+++++++|+...
T Consensus       220 -~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          220 -GRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             -TEEEEECTTTCCEEE
T ss_pred             -CEEEEEcCCCceEEE
Confidence             259999998777543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.71  E-value=4.3e-06  Score=80.73  Aligned_cols=232  Identities=12%  Similarity=0.047  Sum_probs=134.8

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCCCceec-----CCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCC
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDSSPLPI-----TPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG  230 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~~~~~l-----T~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~  230 (548)
                      .|+|.+  .+.|+++++++  ...+.+     ...   +..+...+.|+|+++.|++. ...       ...|+++++++
T Consensus         3 ~l~~~~--~~~I~~~~~~g--~~~~~~~~~~~~~~---~~~~~~gi~~d~~~~~ly~~-d~~-------~~~I~~~~~~g   67 (267)
T 1npe_A            3 HLLFAQ--TGKIERLPLER--NTMKKTEAKAFLHI---PAKVIIGLAFDCVDKVVYWT-DIS-------EPSIGRASLHG   67 (267)
T ss_dssp             EEEEEE--EEEEEEEEESS--SCBCGGGCEEEEEE---EEEEEEEEEEETTTTEEEEE-ETT-------TTEEEEEESSS
T ss_pred             EEEEEc--CCeEEEEEecC--cccccccceeeecC---CCCcEEEEEEecCCCEEEEE-ECC-------CCEEEEEecCC
Confidence            578877  45899999987  443321     111   01234567899998887665 322       25799999998


Q ss_pred             CCccCcEEeeec-CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927          231 QNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (548)
Q Consensus       231 g~~~~~~~L~~~-~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws  309 (548)
                      +.   .+.+... ...-....++|++++|++...       ....|+++++++ ..  ....+....    .......++
T Consensus        68 ~~---~~~~~~~~~~~p~~ia~d~~~~~lyv~d~-------~~~~I~~~~~~g-~~--~~~~~~~~~----~~P~~i~vd  130 (267)
T 1npe_A           68 GE---PTTIIRQDLGSPEGIALDHLGRTIFWTDS-------QLDRIEVAKMDG-TQ--RRVLFDTGL----VNPRGIVTD  130 (267)
T ss_dssp             CC---CEEEECTTCCCEEEEEEETTTTEEEEEET-------TTTEEEEEETTS-CS--CEEEECSSC----SSEEEEEEE
T ss_pred             CC---cEEEEECCCCCccEEEEEecCCeEEEEEC-------CCCEEEEEEcCC-CC--EEEEEECCC----CCccEEEEe
Confidence            76   5555432 223345678999888876542       245799998863 21  122232211    234556789


Q ss_pred             cCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEEC
Q 008927          310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (548)
Q Consensus       310 pDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl  388 (548)
                      |++. ||+ ++.......|+++++++...+.+...  ....|      ..+++.+   +++.||++-  .+...|+++|+
T Consensus       131 ~~~g~lyv-~~~~~~~~~I~~~~~dg~~~~~~~~~--~~~~P------~gia~d~---~~~~lyv~d--~~~~~I~~~~~  196 (267)
T 1npe_A          131 PVRGNLYW-TDWNRDNPKIETSHMDGTNRRILAQD--NLGLP------NGLTFDA---FSSQLCWVD--AGTHRAECLNP  196 (267)
T ss_dssp             TTTTEEEE-EECCSSSCEEEEEETTSCCCEEEECT--TCSCE------EEEEEET---TTTEEEEEE--TTTTEEEEEET
T ss_pred             eCCCEEEE-EECCCCCcEEEEEecCCCCcEEEEEC--CCCCC------cEEEEcC---CCCEEEEEE--CCCCEEEEEec
Confidence            9766 555 44422245788888865444434321  11111      1244543   577887654  34457899998


Q ss_pred             CCCceEeecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          389 FGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       389 ~~g~~~~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      +++..+.+......-.+++.+++.+|+...   ....|+++|.++++.
T Consensus       197 ~g~~~~~~~~~~~~P~gi~~d~~~lyva~~---~~~~v~~~d~~~g~~  241 (267)
T 1npe_A          197 AQPGRRKVLEGLQYPFAVTSYGKNLYYTDW---KTNSVIAMDLAISKE  241 (267)
T ss_dssp             TEEEEEEEEECCCSEEEEEEETTEEEEEET---TTTEEEEEETTTTEE
T ss_pred             CCCceEEEecCCCCceEEEEeCCEEEEEEC---CCCeEEEEeCCCCCc
Confidence            765544432222222344567788776543   235899999887763

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.71  E-value=2.5e-06  Score=84.98  Aligned_cols=201  Identities=7%  Similarity=-0.016  Sum_probs=117.9

Q ss_pred             CccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEE
Q 008927           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY  168 (548)
Q Consensus        89 ~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly  168 (548)
                      ..+..+.++|...++....   .++...||.....  ...+.+......+.       ...|+|++..|+.. ..++.|.
T Consensus        81 ~~v~~~~~~~~~~~l~s~s---~D~~i~lWd~~~~--~~~~~~~~~~~~~~-------~~~~spdg~~l~~g-~~dg~v~  147 (321)
T 3ow8_A           81 LGVVSVDISHTLPIAASSS---LDAHIRLWDLENG--KQIKSIDAGPVDAW-------TLAFSPDSQYLATG-THVGKVN  147 (321)
T ss_dssp             SCEEEEEECSSSSEEEEEE---TTSEEEEEETTTT--EEEEEEECCTTCCC-------CEEECTTSSEEEEE-CTTSEEE
T ss_pred             CCEEEEEECCCCCEEEEEe---CCCcEEEEECCCC--CEEEEEeCCCccEE-------EEEECCCCCEEEEE-cCCCcEE
Confidence            3455667776223333322   2466667765332  12223322221111       13677777766654 4567888


Q ss_pred             EEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcE-EeeecCCce
Q 008927          169 KHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK-VLVSGSDFY  246 (548)
Q Consensus       169 ~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~-~L~~~~~~~  246 (548)
                      +.++..  ++. ..+...    ......+.|+|||+.|+....+         ..|.++|+.+++   .. .+......+
T Consensus       148 i~~~~~--~~~~~~~~~~----~~~v~~~~~spdg~~lasg~~d---------g~i~iwd~~~~~---~~~~~~~h~~~v  209 (321)
T 3ow8_A          148 IFGVES--GKKEYSLDTR----GKFILSIAYSPDGKYLASGAID---------GIINIFDIATGK---LLHTLEGHAMPI  209 (321)
T ss_dssp             EEETTT--CSEEEEEECS----SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTE---EEEEECCCSSCC
T ss_pred             EEEcCC--CceeEEecCC----CceEEEEEECCCCCEEEEEcCC---------CeEEEEECCCCc---EEEEEcccCCce
Confidence            888876  433 233322    2235667899999988775433         358888999886   33 333333346


Q ss_pred             eeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeee
Q 008927          247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN  326 (548)
Q Consensus       247 ~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~  326 (548)
                      ....|||||+.|+-..        ....|.+.|+.. ++  ....+.+..    ..+..+.|+|||++++.... ++  .
T Consensus       210 ~~l~~spd~~~l~s~s--------~dg~i~iwd~~~-~~--~~~~~~~h~----~~v~~~~~sp~~~~l~s~s~-D~--~  271 (321)
T 3ow8_A          210 RSLTFSPDSQLLVTAS--------DDGYIKIYDVQH-AN--LAGTLSGHA----SWVLNVAFCPDDTHFVSSSS-DK--S  271 (321)
T ss_dssp             CEEEECTTSCEEEEEC--------TTSCEEEEETTT-CC--EEEEECCCS----SCEEEEEECTTSSEEEEEET-TS--C
T ss_pred             eEEEEcCCCCEEEEEc--------CCCeEEEEECCC-cc--eeEEEcCCC----CceEEEEECCCCCEEEEEeC-CC--c
Confidence            6789999999887433        134688889874 43  233454433    45778999999995555444 44  4


Q ss_pred             EEEEeccCCeeE
Q 008927          327 LHKWIESNNEVL  338 (548)
Q Consensus       327 Ly~~d~~~g~~~  338 (548)
                      |..+|+.+++..
T Consensus       272 v~iwd~~~~~~~  283 (321)
T 3ow8_A          272 VKVWDVGTRTCV  283 (321)
T ss_dssp             EEEEETTTTEEE
T ss_pred             EEEEeCCCCEEE
Confidence            666677777643

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.71  E-value=1.9e-06  Score=87.16  Aligned_cols=292  Identities=10%  Similarity=0.004  Sum_probs=143.5

Q ss_pred             CCccCceEEcC-CCcEEEEEecCCC--CCceEEEEcCCCCCCCC-cccCCCCCCccccceeeCCeeeEEECCEEEEEeCC
Q 008927           88 SKRLGGTAVDG-HGRLIWLESRPTE--AGRGVLVKEPAKAGDEP-SDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK  163 (548)
Q Consensus        88 ~~~~~~~~~sp-g~~i~~~~~~~~e--~gr~~l~~~~~~~~~~~-~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~  163 (548)
                      ...+..+++|| |..++--......  +|.  ++..+... +.+ ..+......-...+.   ..+|++++. ++... .
T Consensus        42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~--v~~~~~~~-~~~~~~~~~~~~~~~~~V~---~~~~s~d~~-~l~~s-~  113 (357)
T 4g56_B           42 EVQIGAVRYRRDGALLLAASSLSSRTWGGS--IWVFKDPE-GAPNESLCTAGVQTEAGVT---DVAWVSEKG-ILVAS-D  113 (357)
T ss_dssp             CSEEEEEEECSSSCEEEEEECSSSSSCCEE--EEEESSCC----CGGGCSEEEECSSCEE---EEEEETTTE-EEEEE-T
T ss_pred             cCCEEEEEECCCCCEEEEEcCCCCccccCe--EEEEECCC-CCcceeEecccCCCCCCEE---EEEEcCCCC-EEEEE-C
Confidence            46688899999 7766554321100  233  43333221 122 222211100011111   125666554 33333 3


Q ss_pred             CCeEEEEeCCCCCCCceecCCCC-CCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE-eee
Q 008927          164 DQRLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV-LVS  241 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~~~~lT~~~-~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~-L~~  241 (548)
                      ++.|.+.++..  ++...+.... ......+..+.|+|||+.|+....+         ..|.++|+.+++   ... +..
T Consensus       114 dg~v~lWd~~~--~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d---------g~v~iwd~~~~~---~~~~~~~  179 (357)
T 4g56_B          114 SGAVELWEILE--KESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD---------FSVKVWDLSQKA---VLKSYNA  179 (357)
T ss_dssp             TSCEEEC----------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT---------SCEEEEETTTTE---EEEEECC
T ss_pred             CCEEEEeeccc--cceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC---------CeEEEEECCCCc---EEEEEcC
Confidence            56666666654  3322111100 0001235567899999988765433         357888999886   333 333


Q ss_pred             cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeC
Q 008927          242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR  320 (548)
Q Consensus       242 ~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~  320 (548)
                      ....+....|+|+++.++.....       ...|.+.|+.. ++.  ...+......  ..+....|+|++. +++....
T Consensus       180 h~~~v~~v~~s~~~~~~~~s~~~-------dg~v~~wd~~~-~~~--~~~~~~~~~~--~~v~~v~~sp~~~~~la~g~~  247 (357)
T 4g56_B          180 HSSEVNCVAACPGKDTIFLSCGE-------DGRILLWDTRK-PKP--ATRIDFCASD--TIPTSVTWHPEKDDTFACGDE  247 (357)
T ss_dssp             CSSCEEEEEECTTCSSCEEEEET-------TSCEEECCTTS-SSC--BCBCCCTTCC--SCEEEEEECTTSTTEEEEEES
T ss_pred             CCCCEEEEEEccCCCceeeeecc-------CCceEEEECCC-Cce--eeeeeecccc--ccccchhhhhcccceEEEeec
Confidence            34456677899999755434321       24577878874 331  1112111101  3456789999976 7666554


Q ss_pred             CCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCC
Q 008927          321 KNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF  400 (548)
Q Consensus       321 ~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~  400 (548)
                       ++  .|.++|+.+++........   ..+     .....|.|   +++.++++...++.  |+++|+++++........
T Consensus       248 -d~--~i~~wd~~~~~~~~~~~~~---~~~-----v~~l~~sp---~~~~~lasgs~D~~--i~iwd~~~~~~~~~~~H~  311 (357)
T 4g56_B          248 -TG--NVSLVNIKNPDSAQTSAVH---SQN-----ITGLAYSY---HSSPFLASISEDCT--VAVLDADFSEVFRDLSHR  311 (357)
T ss_dssp             -SS--CEEEEESSCGGGCEEECCC---SSC-----EEEEEECS---SSSCCEEEEETTSC--EEEECTTSCEEEEECCCS
T ss_pred             -cc--ceeEEECCCCcEeEEEecc---cee-----EEEEEEcC---CCCCEEEEEeCCCE--EEEEECCCCcEeEECCCC
Confidence             44  4666777666543222110   111     12245554   66666666666664  556688888765443322


Q ss_pred             ceeEee--ee-cCCEEEEEEecCCCCCeEEEEEcCC
Q 008927          401 TDIDNI--TL-GNDCLFVEGASGVEPSSVAKVTLDD  433 (548)
Q Consensus       401 ~~~~~~--s~-d~~~l~~~~ss~~~p~~l~~~d~~~  433 (548)
                      ..+..+  ++ +++. ++.++.   -..|.+.++..
T Consensus       312 ~~V~~vafsP~d~~~-l~s~s~---Dg~v~iW~~~~  343 (357)
T 4g56_B          312 DFVTGVAWSPLDHSK-FTTVGW---DHKVLHHHLPS  343 (357)
T ss_dssp             SCEEEEEECSSSTTE-EEEEET---TSCEEEEECC-
T ss_pred             CCEEEEEEeCCCCCE-EEEEcC---CCeEEEEECCC
Confidence            335544  55 4454 444443   24577777643

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.71  E-value=1.2e-05  Score=81.55  Aligned_cols=292  Identities=12%  Similarity=0.048  Sum_probs=155.8

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L  167 (548)
                      ..+..+.++| |..++.....   +|...||.....   ........ ......+.   ...|+++++.++++...++.|
T Consensus        74 ~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~---~~~~~~~~-~~h~~~v~---~~~~~~~~~~~l~s~~~d~~i  143 (383)
T 3ei3_B           74 RRVTSLEWHPTHPTTVAVGSK---GGDIILWDYDVQ---NKTSFIQG-MGPGDAIT---GMKFNQFNTNQLFVSSIRGAT  143 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEEB---TSCEEEEETTST---TCEEEECC-CSTTCBEE---EEEEETTEEEEEEEEETTTEE
T ss_pred             CCEEEEEECCCCCCEEEEEcC---CCeEEEEeCCCc---ccceeeec-CCcCCcee---EEEeCCCCCCEEEEEeCCCEE
Confidence            4567788898 6455555433   577778876433   23222210 00011111   125666344555666677888


Q ss_pred             EEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCcee
Q 008927          168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYA  247 (548)
Q Consensus       168 y~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~  247 (548)
                      .+.++.+  ...+.+..... ....+..+.|+||++.|+....+         ..|.++|+.+..   ...+......+.
T Consensus       144 ~iwd~~~--~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~---~~~~~~h~~~v~  208 (383)
T 3ei3_B          144 TLRDFSG--SVIQVFAKTDS-WDYWYCCVDVSVSRQMLATGDST---------GRLLLLGLDGHE---IFKEKLHKAKVT  208 (383)
T ss_dssp             EEEETTS--CEEEEEECCCC-SSCCEEEEEEETTTTEEEEEETT---------SEEEEEETTSCE---EEEEECSSSCEE
T ss_pred             EEEECCC--CceEEEeccCC-CCCCeEEEEECCCCCEEEEECCC---------CCEEEEECCCCE---EEEeccCCCcEE
Confidence            8888875  54555543310 11235677899999987765333         478889986544   555554555677


Q ss_pred             eeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCce-eeeEEEcCCCCCcccCCcCceECc-CCcEEEEEeCCCCee
Q 008927          248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVESPTEPKWSS-KGELFFVTDRKNGFW  325 (548)
Q Consensus       248 ~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~-~~~~~l~~~~~~~~~~~~~~~wsp-DG~L~~~sd~~~g~~  325 (548)
                      ...|+|||+.+++....       ...|.+.|+...... .....+ +..    ..+..+.|+| ||++++.... ++  
T Consensus       209 ~~~~~~~~~~~l~s~~~-------d~~i~iwd~~~~~~~~~~~~~~-~~~----~~v~~~~~s~~~~~~l~~~~~-d~--  273 (383)
T 3ei3_B          209 HAEFNPRCDWLMATSSV-------DATVKLWDLRNIKDKNSYIAEM-PHE----KPVNAAYFNPTDSTKLLTTDQ-RN--  273 (383)
T ss_dssp             EEEECSSCTTEEEEEET-------TSEEEEEEGGGCCSTTCEEEEE-ECS----SCEEEEEECTTTSCEEEEEES-SS--
T ss_pred             EEEECCCCCCEEEEEeC-------CCEEEEEeCCCCCcccceEEEe-cCC----CceEEEEEcCCCCCEEEEEcC-CC--
Confidence            88999999943334321       357888898742110 012223 222    4678899999 9995555444 34  


Q ss_pred             eEEEEeccCCee-Eeecccc-cccCCCcccccCcceeeeeecCCCCEEEEEEEe------CCeEEEEEEECCCCce-Eee
Q 008927          326 NLHKWIESNNEV-LAIYSLD-AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ------NGRSYLGILDDFGHSL-SLL  396 (548)
Q Consensus       326 ~Ly~~d~~~g~~-~~l~~~~-~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~------~g~~~L~~~dl~~g~~-~~l  396 (548)
                      .|.++|+.+++. ..+.... ........+    ...|.|   ++..+.+....      .....|+++|+.+++. ..+
T Consensus       274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p---~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l  346 (383)
T 3ei3_B          274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPI----KATWHP---MYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQL  346 (383)
T ss_dssp             EEEEEETTBTTSCSEEEECCBCCCTTSCCC----CCEECS---SSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEE
T ss_pred             cEEEEECCCCccccccccccccccccccce----EEeccC---CCCceEEEecCCcccccCCCCeEEEEecCCCceeeee
Confidence            566777766653 2222110 000000000    012222   33333322211      1234577888887764 345


Q ss_pred             cCC--CceeE--eeeecCCEEEEEEecCCCCCeEEEEEcC
Q 008927          397 DIP--FTDID--NITLGNDCLFVEGASGVEPSSVAKVTLD  432 (548)
Q Consensus       397 ~~~--~~~~~--~~s~d~~~l~~~~ss~~~p~~l~~~d~~  432 (548)
                      ...  ...+.  .+++++..|+. ++  .  ..|.++|++
T Consensus       347 ~~~~~~~~~~~~~~s~~g~~l~s-~s--d--~~i~iw~~~  381 (383)
T 3ei3_B          347 RDPNAAGIISLNKFSPTGDVLAS-GM--G--FNILIWNRE  381 (383)
T ss_dssp             CBTTBCSCCCEEEECTTSSEEEE-EE--T--TEEEEEECC
T ss_pred             cCCCCCceEEEEEEecCccEEEE-ec--C--CcEEEEecC
Confidence            432  12233  34677775543 33  2  578888765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.70  E-value=4.7e-06  Score=82.94  Aligned_cols=226  Identities=10%  Similarity=0.059  Sum_probs=130.7

Q ss_pred             eEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      |++++. ++.+...++.|.+.++..  ++. +.+...    ......+.|+|||+.|+....+         ..|.++|+
T Consensus        88 ~~~~~~-~l~s~s~D~~i~lWd~~~--~~~~~~~~~~----~~~~~~~~~spdg~~l~~g~~d---------g~v~i~~~  151 (321)
T 3ow8_A           88 ISHTLP-IAASSSLDAHIRLWDLEN--GKQIKSIDAG----PVDAWTLAFSPDSQYLATGTHV---------GKVNIFGV  151 (321)
T ss_dssp             ECSSSS-EEEEEETTSEEEEEETTT--TEEEEEEECC----TTCCCCEEECTTSSEEEEECTT---------SEEEEEET
T ss_pred             ECCCCC-EEEEEeCCCcEEEEECCC--CCEEEEEeCC----CccEEEEEECCCCCEEEEEcCC---------CcEEEEEc
Confidence            333443 445555678888888875  333 344332    2345567899999987764322         46888899


Q ss_pred             CCCCccCcE-EeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          229 NGQNIQEPK-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       229 ~~g~~~~~~-~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      .+++   .. .+...........|||||+.|+....        ...|.+.|+.. ++  ....+.+..    ..+..+.
T Consensus       152 ~~~~---~~~~~~~~~~~v~~~~~spdg~~lasg~~--------dg~i~iwd~~~-~~--~~~~~~~h~----~~v~~l~  213 (321)
T 3ow8_A          152 ESGK---KEYSLDTRGKFILSIAYSPDGKYLASGAI--------DGIINIFDIAT-GK--LLHTLEGHA----MPIRSLT  213 (321)
T ss_dssp             TTCS---EEEEEECSSSCEEEEEECTTSSEEEEEET--------TSCEEEEETTT-TE--EEEEECCCS----SCCCEEE
T ss_pred             CCCc---eeEEecCCCceEEEEEECCCCCEEEEEcC--------CCeEEEEECCC-Cc--EEEEEcccC----CceeEEE
Confidence            8886   33 33333445677899999999885542        34688889874 54  234454433    4678899


Q ss_pred             ECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (548)
Q Consensus       308 wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d  387 (548)
                      |+|||++++.... ++  .|..+|+.+++.......     ...++   ....|.|   +++.| ++...++.  |.+.|
T Consensus       214 ~spd~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~-----h~~~v---~~~~~sp---~~~~l-~s~s~D~~--v~iwd  276 (321)
T 3ow8_A          214 FSPDSQLLVTASD-DG--YIKIYDVQHANLAGTLSG-----HASWV---LNVAFCP---DDTHF-VSSSSDKS--VKVWD  276 (321)
T ss_dssp             ECTTSCEEEEECT-TS--CEEEEETTTCCEEEEECC-----CSSCE---EEEEECT---TSSEE-EEEETTSC--EEEEE
T ss_pred             EcCCCCEEEEEcC-CC--eEEEEECCCcceeEEEcC-----CCCce---EEEEECC---CCCEE-EEEeCCCc--EEEEe
Confidence            9999996555544 44  366667766654332211     11111   1245654   55554 45555554  55668


Q ss_pred             CCCCceE-eecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEE
Q 008927          388 DFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVT  430 (548)
Q Consensus       388 l~~g~~~-~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d  430 (548)
                      +.+++.. .+......+..+  +++++.|+. ++.   -..|.++|
T Consensus       277 ~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s-~~~---d~~i~vwd  318 (321)
T 3ow8_A          277 VGTRTCVHTFFDHQDQVWGVKYNGNGSKIVS-VGD---DQEIHIYD  318 (321)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEE-EET---TCCEEEEE
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCEEEE-EeC---CCeEEEEe
Confidence            7777543 333333334444  566665543 332   13455555

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.70  E-value=3.2e-06  Score=84.50  Aligned_cols=222  Identities=11%  Similarity=0.037  Sum_probs=123.6

Q ss_pred             CHHHHhcCC-CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEE
Q 008927           80 TADVVSGAS-KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTV  157 (548)
Q Consensus        80 t~~~l~~~~-~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i  157 (548)
                      +++.+.... .....|.|+| ++.+||+...   .+  .|++++..+ +..+.+...     ..+   .+..|.++|. +
T Consensus        39 ~~~~~~~~~~~~~egp~~~~~~~~l~~~d~~---~~--~i~~~d~~~-~~~~~~~~~-----~~v---~~i~~~~dg~-l  103 (326)
T 2ghs_A           39 AGRVLDETPMLLGEGPTFDPASGTAWWFNIL---ER--ELHELHLAS-GRKTVHALP-----FMG---SALAKISDSK-Q  103 (326)
T ss_dssp             CCEEEECSCCSBEEEEEEETTTTEEEEEEGG---GT--EEEEEETTT-TEEEEEECS-----SCE---EEEEEEETTE-E
T ss_pred             ceEEeeccCCCCCcCCeEeCCCCEEEEEECC---CC--EEEEEECCC-CcEEEEECC-----Ccc---eEEEEeCCCe-E
Confidence            455555532 2346799999 8999999743   23  466665542 233333211     111   1224555554 4


Q ss_pred             EEEeCCCCeEEEEeCCCCCCCceecCCCCC-CCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCc
Q 008927          158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYG-EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (548)
Q Consensus       158 ~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~-~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~  236 (548)
                      ++..  ...|+++++++  ++.+.+..... ....+..++.++|||+. ++......  .......||+++  +++   .
T Consensus       104 ~v~~--~~gl~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~~~--~~~~~~~l~~~~--~g~---~  171 (326)
T 2ghs_A          104 LIAS--DDGLFLRDTAT--GVLTLHAELESDLPGNRSNDGRMHPSGAL-WIGTMGRK--AETGAGSIYHVA--KGK---V  171 (326)
T ss_dssp             EEEE--TTEEEEEETTT--CCEEEEECSSTTCTTEEEEEEEECTTSCE-EEEEEETT--CCTTCEEEEEEE--TTE---E
T ss_pred             EEEE--CCCEEEEECCC--CcEEEEeeCCCCCCCCCCCCEEECCCCCE-EEEeCCCc--CCCCceEEEEEe--CCc---E
Confidence            4444  34599999976  66666643211 01235667889999984 33322211  011246899999  465   5


Q ss_pred             EEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEec-CCC-ceeeeEEEcCCC-CCcccCCcCceECcCCc
Q 008927          237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENG-DVYKRVCVAGFD-PTIVESPTEPKWSSKGE  313 (548)
Q Consensus       237 ~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~-~~g-~~~~~~~l~~~~-~~~~~~~~~~~wspDG~  313 (548)
                      +.+..+........|||||+.|++...       ....|++++++ .+| ++...+.+.... ..  .......+++||.
T Consensus       172 ~~~~~~~~~~~~i~~s~dg~~lyv~~~-------~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~--~~p~gi~~d~~G~  242 (326)
T 2ghs_A          172 TKLFADISIPNSICFSPDGTTGYFVDT-------KVNRLMRVPLDARTGLPTGKAEVFIDSTGIK--GGMDGSVCDAEGH  242 (326)
T ss_dssp             EEEEEEESSEEEEEECTTSCEEEEEET-------TTCEEEEEEBCTTTCCBSSCCEEEEECTTSS--SEEEEEEECTTSC
T ss_pred             EEeeCCCcccCCeEEcCCCCEEEEEEC-------CCCEEEEEEcccccCCcccCceEEEECCCCC--CCCCeeEECCCCC
Confidence            555544334456789999998876542       13579999986 235 432222222110 01  2234567888998


Q ss_pred             EEEEEeCCCCeeeEEEEeccCCeeEee
Q 008927          314 LFFVTDRKNGFWNLHKWIESNNEVLAI  340 (548)
Q Consensus       314 L~~~sd~~~g~~~Ly~~d~~~g~~~~l  340 (548)
                      ||+.... .  ..|+++++++...+.+
T Consensus       243 lwva~~~-~--~~v~~~d~~g~~~~~i  266 (326)
T 2ghs_A          243 IWNARWG-E--GAVDRYDTDGNHIARY  266 (326)
T ss_dssp             EEEEEET-T--TEEEEECTTCCEEEEE
T ss_pred             EEEEEeC-C--CEEEEECCCCCEEEEE
Confidence            7665533 2  2688999844333333

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.70  E-value=9.8e-06  Score=80.50  Aligned_cols=259  Identities=13%  Similarity=0.072  Sum_probs=137.2

Q ss_pred             CccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCC-CCCCccccceeeCCeeeEEECCEEEEEeCCC---
Q 008927           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITP-KEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD---  164 (548)
Q Consensus        89 ~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~-~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~---  164 (548)
                      ..+..+.++|.+++||+...   .+  .|++++..+ ++.+.++. ....    ++   +..+.++| .|++....+   
T Consensus        45 ~~~~~~~~~~~g~l~~~~~~---~~--~i~~~d~~~-~~~~~~~~~~~~~----~~---~i~~~~dg-~l~v~~~~~~~~  110 (333)
T 2dg1_A           45 LQLEGLNFDRQGQLFLLDVF---EG--NIFKINPET-KEIKRPFVSHKAN----PA---AIKIHKDG-RLFVCYLGDFKS  110 (333)
T ss_dssp             CCEEEEEECTTSCEEEEETT---TC--EEEEECTTT-CCEEEEEECSSSS----EE---EEEECTTS-CEEEEECTTSSS
T ss_pred             ccccCcEECCCCCEEEEECC---CC--EEEEEeCCC-CcEEEEeeCCCCC----cc---eEEECCCC-cEEEEeCCCCCC
Confidence            45678899984457776532   23  466665542 34444431 1111    11   11233344 455555444   


Q ss_pred             -CeEEEEeCCCCCCCcee-cCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeec
Q 008927          165 -QRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG  242 (548)
Q Consensus       165 -~~Ly~~~~~~~~~~~~~-lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~  242 (548)
                       ..|+++++++  +..+. ++...  ......++.++|||+.+ +......  .......||++|.++++   .+.+...
T Consensus       111 ~~~i~~~d~~~--~~~~~~~~~~~--~~~~~~~i~~d~~g~l~-v~~~~~~--~~~~~~~l~~~~~~~~~---~~~~~~~  180 (333)
T 2dg1_A          111 TGGIFAATENG--DNLQDIIEDLS--TAYCIDDMVFDSKGGFY-FTDFRGY--STNPLGGVYYVSPDFRT---VTPIIQN  180 (333)
T ss_dssp             CCEEEEECTTS--CSCEEEECSSS--SCCCEEEEEECTTSCEE-EEECCCB--TTBCCEEEEEECTTSCC---EEEEEEE
T ss_pred             CceEEEEeCCC--CEEEEEEccCc--cCCcccceEECCCCCEE-EEecccc--ccCCCceEEEEeCCCCE---EEEeecC
Confidence             5899999987  55553 33211  12345577899999743 3322110  01124689999998877   6666544


Q ss_pred             CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc-eeee--EEEcCCCCCcccCCcCceECcCCcEEEEEe
Q 008927          243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKR--VCVAGFDPTIVESPTEPKWSSKGELFFVTD  319 (548)
Q Consensus       243 ~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~-~~~~--~~l~~~~~~~~~~~~~~~wspDG~L~~~sd  319 (548)
                      ........|+|||+.|++....       ...|++++++.+|. +...  .........  .....+.+++||+||+...
T Consensus       181 ~~~~~~i~~~~dg~~l~v~~~~-------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~d~~G~l~v~~~  251 (333)
T 2dg1_A          181 ISVANGIALSTDEKVLWVTETT-------ANRLHRIALEDDGVTIQPFGATIPYYFTGH--EGPDSCCIDSDDNLYVAMY  251 (333)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGG-------GTEEEEEEECTTSSSEEEEEEEEEEECCSS--SEEEEEEEBTTCCEEEEEE
T ss_pred             CCcccceEECCCCCEEEEEeCC-------CCeEEEEEecCCCcCcccccceEEEecCCC--CCCCceEECCCCCEEEEEc
Confidence            3345567899999988655421       35799999864343 2110  111111100  1234578899998766553


Q ss_pred             CCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC---CeEEEEEEECC
Q 008927          320 RKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN---GRSYLGILDDF  389 (548)
Q Consensus       320 ~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~---g~~~L~~~dl~  389 (548)
                      . .  ..|+++++++...+.+.......+...+   .....+.+   |++.|+++...+   ....|+++++.
T Consensus       252 ~-~--~~v~~~d~~g~~~~~~~~~~~~~g~~~~---~~~~~~~~---dg~~L~v~~~~g~~~~~~~l~~~~~~  315 (333)
T 2dg1_A          252 G-Q--GRVLVFNKRGYPIGQILIPGRDEGHMLR---STHPQFIP---GTNQLIICSNDIEMGGGSMLYTVNGF  315 (333)
T ss_dssp             T-T--TEEEEECTTSCEEEEEECTTGGGTCSCB---CCEEEECT---TSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             C-C--CEEEEECCCCCEEEEEEcCCCccccccC---cceEEECC---CCCEEEEEeCccCCCCCceEEEEecc
Confidence            3 2  2688888854444444211100000001   11234443   667787766542   34578888764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.69  E-value=1.7e-06  Score=85.39  Aligned_cols=257  Identities=11%  Similarity=0.010  Sum_probs=137.7

Q ss_pred             HHHHhcCCCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEE
Q 008927           81 ADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIF  159 (548)
Q Consensus        81 ~~~l~~~~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F  159 (548)
                      ++.|.........|.|+| |+.++|+...   .++  |++++.+  ++.+.+....-.    .   -+..+.++| .|+.
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~---~~~--i~~~~~~--g~~~~~~~~~~~----~---~gl~~d~dG-~l~v  101 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLV---GRR--VLGWRED--GTVDVLLDATAF----T---NGNAVDAQQ-RLVH  101 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETT---TTE--EEEEETT--SCEEEEEESCSC----E---EEEEECTTS-CEEE
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECC---CCE--EEEEeCC--CCEEEEeCCCCc----c---ceeeECCCC-CEEE
Confidence            344444435556889999 8889998643   344  4444444  344433321100    0   011333344 4555


Q ss_pred             EeCCCCeEEEEeCCCCCCCceecCCCCCCC-CceecceeeCCCCCEEEEEEe------cc---CCCCCCceeEEEEEECC
Q 008927          160 SNYKDQRLYKHSIDSKDSSPLPITPDYGEP-LVSYADGIFDPRFNRYVTVRE------DR---RQDALNSTTEIVAIALN  229 (548)
Q Consensus       160 ~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~-~~~~~~~~~SpDG~~i~~v~~------~~---~~~~~~~~~~l~~idl~  229 (548)
                      .......|++++.++   +.+.+....... .....++.++|||+ |++...      +.   ..........||++|.+
T Consensus       102 ~~~~~~~v~~~~~~g---~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~  177 (305)
T 3dr2_A          102 CEHGRRAITRSDADG---QAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD  177 (305)
T ss_dssp             EETTTTEEEEECTTS---CEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred             EECCCCEEEEECCCC---CEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence            555556899999863   455553321000 01245688999997 444210      00   00001123689999998


Q ss_pred             CCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (548)
Q Consensus       230 ~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws  309 (548)
                      +++   .+.+. +........|||||+.|++......  +-....|++++++.++ +...+.+.... .  .....+.++
T Consensus       178 ~g~---~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~--~~~~~~i~~~~~~~~~-l~~~~~~~~~~-~--~~pdgi~~d  247 (305)
T 3dr2_A          178 GSP---LQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQ--GHGSVEITAFAWRDGA-LHDRRHFASVP-D--GLPDGFCVD  247 (305)
T ss_dssp             SCC---CEEEE-EESSEEEEEECTTSSEEEEEECCC-----CCCEEEEEEEETTE-EEEEEEEECCS-S--SCCCSEEEC
T ss_pred             CCc---EEEEe-cCCCCcceEEcCCCCEEEEEecCCc--CCCCCEEEEEEecCCC-ccCCeEEEECC-C--CCCCeEEEC
Confidence            888   66665 3333456789999998875542210  0013579999998543 33333332211 1  234567889


Q ss_pred             cCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEEC
Q 008927          310 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (548)
Q Consensus       310 pDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl  388 (548)
                      +||+||+.+ . .   .|+++++++.....+...       .   +.....+.+   +++.|+++..    ..||++++
T Consensus       248 ~~G~lwv~~-~-~---gv~~~~~~g~~~~~~~~~-------~---~~~~~~f~~---d~~~L~it~~----~~l~~~~~  304 (305)
T 3dr2_A          248 RGGWLWSSS-G-T---GVCVFDSDGQLLGHIPTP-------G---TASNCTFDQ---AQQRLFITGG----PCLWMLPL  304 (305)
T ss_dssp             TTSCEEECC-S-S---EEEEECTTSCEEEEEECS-------S---CCCEEEECT---TSCEEEEEET----TEEEEEEC
T ss_pred             CCCCEEEec-C-C---cEEEECCCCCEEEEEECC-------C---ceeEEEEeC---CCCEEEEEcC----CeEEEEEC
Confidence            999865544 3 2   499999865444444311       1   112234433   6667766542    25777664

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.69  E-value=1.4e-05  Score=78.59  Aligned_cols=235  Identities=12%  Similarity=0.141  Sum_probs=135.6

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      .|++++..|+... .++.|.+.++..  ++.. .+...    ...+..+.|+|||+.|+....+         ..|.++|
T Consensus        30 ~~s~~~~~l~s~~-~dg~i~iw~~~~--~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~d---------~~i~vwd   93 (312)
T 4ery_A           30 KFSPNGEWLASSS-ADKLIKIWGAYD--GKFEKTISGH----KLGISDVAWSSDSNLLVSASDD---------KTLKIWD   93 (312)
T ss_dssp             EECTTSSEEEEEE-TTSCEEEEETTT--CCEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEEEE
T ss_pred             EECCCCCEEEEee-CCCeEEEEeCCC--cccchhhccC----CCceEEEEEcCCCCEEEEECCC---------CEEEEEE
Confidence            4556666655543 566677777765  4443 34332    2346678899999988775433         3688889


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      +.+++.  ...+...........|+|||+.|+-...        ...|.+.|+.. ++  ....+....    ..+....
T Consensus        94 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~--------d~~i~iwd~~~-~~--~~~~~~~~~----~~v~~~~  156 (312)
T 4ery_A           94 VSSGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSF--------DESVRIWDVKT-GK--CLKTLPAHS----DPVSAVH  156 (312)
T ss_dssp             TTTCCE--EEEEECCSSCEEEEEECSSSSEEEEEET--------TSCEEEEETTT-CC--EEEEECCCS----SCEEEEE
T ss_pred             CCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEeC--------CCcEEEEECCC-CE--EEEEecCCC----CcEEEEE
Confidence            998861  2334434445667789999998875442        34688889874 43  233444432    4567789


Q ss_pred             ECcCCcEEEEEeCCCCeeeEEEEeccCCeeE-eecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (548)
Q Consensus       308 wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~-~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~  386 (548)
                      |+|||++++.... +|  .|..+|+.+++.. .+....   ..+     .....+.|   +++.|+ +...++  .|.++
T Consensus       157 ~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~~---~~~-----~~~~~~~~---~~~~l~-~~~~d~--~i~iw  219 (312)
T 4ery_A          157 FNRDGSLIVSSSY-DG--LCRIWDTASGQCLKTLIDDD---NPP-----VSFVKFSP---NGKYIL-AATLDN--TLKLW  219 (312)
T ss_dssp             ECTTSSEEEEEET-TS--CEEEEETTTCCEEEEECCSS---CCC-----EEEEEECT---TSSEEE-EEETTT--EEEEE
T ss_pred             EcCCCCEEEEEeC-CC--cEEEEECCCCceeeEEeccC---CCc-----eEEEEECC---CCCEEE-EEcCCC--eEEEE
Confidence            9999995555544 44  4666777666543 222110   111     11234543   556554 444455  46677


Q ss_pred             ECCCCceE-eecCCCc----eeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          387 DDFGHSLS-LLDIPFT----DIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       387 dl~~g~~~-~l~~~~~----~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      |+.+++.. .+.....    ....+...++.+++.++.   ...|+++|+.+++.
T Consensus       220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~  271 (312)
T 4ery_A          220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE---DNLVYIWNLQTKEI  271 (312)
T ss_dssp             ETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCT---TSCEEEEETTTCCE
T ss_pred             ECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECC---CCEEEEEECCCchh
Confidence            88877643 3332111    112223344444444432   35788899877653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.68  E-value=4.7e-06  Score=82.88  Aligned_cols=248  Identities=12%  Similarity=0.023  Sum_probs=132.0

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      .|.++| .|+++...++.|+++++++  ++.+.+....   ......+.++|||+.++.. ....    .....|+++|+
T Consensus        51 ~~~~~g-~l~~~~~~~~~i~~~d~~~--~~~~~~~~~~---~~~~~~i~~~~dg~l~v~~-~~~~----~~~~~i~~~d~  119 (333)
T 2dg1_A           51 NFDRQG-QLFLLDVFEGNIFKINPET--KEIKRPFVSH---KANPAAIKIHKDGRLFVCY-LGDF----KSTGGIFAATE  119 (333)
T ss_dssp             EECTTS-CEEEEETTTCEEEEECTTT--CCEEEEEECS---SSSEEEEEECTTSCEEEEE-CTTS----SSCCEEEEECT
T ss_pred             EECCCC-CEEEEECCCCEEEEEeCCC--CcEEEEeeCC---CCCcceEEECCCCcEEEEe-CCCC----CCCceEEEEeC
Confidence            454444 4787776778999999987  6666654211   1245667899999854443 2110    01247999999


Q ss_pred             CCCCccCcEEeee-c--CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcC
Q 008927          229 NGQNIQEPKVLVS-G--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (548)
Q Consensus       229 ~~g~~~~~~~L~~-~--~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~  305 (548)
                      +++.   .+.+.. .  ........++|||+ |.+....... .-....||.++.++ +++   ..+....    .....
T Consensus       120 ~~~~---~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~-~~~~~~l~~~~~~~-~~~---~~~~~~~----~~~~~  186 (333)
T 2dg1_A          120 NGDN---LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYS-TNPLGGVYYVSPDF-RTV---TPIIQNI----SVANG  186 (333)
T ss_dssp             TSCS---CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBT-TBCCEEEEEECTTS-CCE---EEEEEEE----SSEEE
T ss_pred             CCCE---EEEEEccCccCCcccceEECCCCC-EEEEeccccc-cCCCceEEEEeCCC-CEE---EEeecCC----Ccccc
Confidence            9987   553322 1  22345678999997 4333321100 00135788887652 432   2222111    23456


Q ss_pred             ceECcCCc-EEEEEeCCCCeeeEEEEeccC-C-eeEeeccc-ccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeE
Q 008927          306 PKWSSKGE-LFFVTDRKNGFWNLHKWIESN-N-EVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS  381 (548)
Q Consensus       306 ~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~-g-~~~~l~~~-~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~  381 (548)
                      +.|+|||+ ||+.... .+  .|+++++++ + ....+... .........   ...+.+.+   ++ .|++....+  .
T Consensus       187 i~~~~dg~~l~v~~~~-~~--~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~---~~~i~~d~---~G-~l~v~~~~~--~  254 (333)
T 2dg1_A          187 IALSTDEKVLWVTETT-AN--RLHRIALEDDGVTIQPFGATIPYYFTGHEG---PDSCCIDS---DD-NLYVAMYGQ--G  254 (333)
T ss_dssp             EEECTTSSEEEEEEGG-GT--EEEEEEECTTSSSEEEEEEEEEEECCSSSE---EEEEEEBT---TC-CEEEEEETT--T
T ss_pred             eEECCCCCEEEEEeCC-CC--eEEEEEecCCCcCcccccceEEEecCCCCC---CCceEECC---CC-CEEEEEcCC--C
Confidence            78999999 6555433 33  678888742 3 23222100 000000000   11133432   44 455444322  3


Q ss_pred             EEEEEECCCCceEeecCCCc------eeEee--eecCCEEEEEEecC--CCCCeEEEEEcC
Q 008927          382 YLGILDDFGHSLSLLDIPFT------DIDNI--TLGNDCLFVEGASG--VEPSSVAKVTLD  432 (548)
Q Consensus       382 ~L~~~dl~~g~~~~l~~~~~------~~~~~--s~d~~~l~~~~ss~--~~p~~l~~~d~~  432 (548)
                      .|+++|+++...+.+..+..      ....+  ++|++.||+.....  .....||++++.
T Consensus       255 ~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~  315 (333)
T 2dg1_A          255 RVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  315 (333)
T ss_dssp             EEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             EEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence            67888986554555554321      22222  56777887766542  234678888864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.67  E-value=3.5e-06  Score=86.41  Aligned_cols=242  Identities=11%  Similarity=0.092  Sum_probs=140.3

Q ss_pred             eeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      .+|++++..|+... .++.|++.++..  ++.......    ........|+|||+.|+....+         ..|.++|
T Consensus        62 ~~~s~~g~~l~~~~-~d~~v~i~d~~~--~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd  125 (420)
T 3vl1_A           62 NTFEKVGSHLYKAR-LDGHDFLFNTII--RDGSKMLKR----ADYTAVDTAKLQMRRFILGTTE---------GDIKVLD  125 (420)
T ss_dssp             CEEEEEETTEEEEE-ETTEEEEEECCS--EETTTTSCS----CCEEEEEEECSSSCEEEEEETT---------SCEEEEC
T ss_pred             eeeeecCCeEEEEE-cCCcEEEEEecc--cceeeEEec----CCceEEEEEecCCCEEEEEECC---------CCEEEEe
Confidence            47899988776654 367888888875  333222222    1122233689999988775433         3588889


Q ss_pred             CCCCCccCcEEee-ecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCc
Q 008927          228 LNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (548)
Q Consensus       228 l~~g~~~~~~~L~-~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~  306 (548)
                      +.+++   ...+. ...+.+....|+|||+.|+....        ...|.+.++.. ++  ....+.+..    ..+..+
T Consensus       126 ~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~s~--------d~~i~iwd~~~-~~--~~~~~~~h~----~~v~~~  187 (420)
T 3vl1_A          126 SNFNL---QREIDQAHVSEITKLKFFPSGEALISSSQ--------DMQLKIWSVKD-GS--NPRTLIGHR----ATVTDI  187 (420)
T ss_dssp             TTSCE---EEEETTSSSSCEEEEEECTTSSEEEEEET--------TSEEEEEETTT-CC--CCEEEECCS----SCEEEE
T ss_pred             CCCcc---eeeecccccCccEEEEECCCCCEEEEEeC--------CCeEEEEeCCC-Cc--CceEEcCCC----CcEEEE
Confidence            98876   44443 34455778899999998875441        35799999984 43  234444433    567889


Q ss_pred             eECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCC----ccc------------ccCcceeeeeecCCCCE
Q 008927          307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP----LWV------------FGINSYEIIQSHGEKNL  370 (548)
Q Consensus       307 ~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p----~w~------------~~~~~~~~~~~~~d~~~  370 (548)
                      .|+|||++++.... +|  .|..+|+.+++..............    .|.            .......|.|   +++ 
T Consensus       188 ~~~~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~-  260 (420)
T 3vl1_A          188 AIIDRGRNVLSASL-DG--TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT---YGK-  260 (420)
T ss_dssp             EEETTTTEEEEEET-TS--CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC---TTE-
T ss_pred             EEcCCCCEEEEEcC-CC--cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC---CCC-
Confidence            99999995555444 44  4666777777654332210000000    000            0111233443   444 


Q ss_pred             EEEEEEeCCeEEEEEEECCCCceE-eecCC-CceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          371 IACSYRQNGRSYLGILDDFGHSLS-LLDIP-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       371 l~~~~~~~g~~~L~~~dl~~g~~~-~l~~~-~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      ++++...++.  |.++|+.+++.. .+... ...+..+  +++++.++++++.   ...|+++|+.+++
T Consensus       261 ~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~---dg~i~vwd~~~~~  324 (420)
T 3vl1_A          261 YVIAGHVSGV--ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE---NGMLAQWDLRSPE  324 (420)
T ss_dssp             EEEEEETTSC--EEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEET---TSEEEEEETTCTT
T ss_pred             EEEEEcCCCe--EEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeC---CCeEEEEEcCCCc
Confidence            4445555554  667788777543 33332 2334444  5677635555543   3678999987764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.67  E-value=1.8e-06  Score=89.69  Aligned_cols=296  Identities=11%  Similarity=0.049  Sum_probs=149.4

Q ss_pred             ccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEE
Q 008927           90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY  168 (548)
Q Consensus        90 ~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly  168 (548)
                      ++..+.++| +..+...-.   .+|.-.||.+...  .....+...+  -...|.   .-.|+|.++.++++...|+.|.
T Consensus       121 ~V~~l~~~P~~~~~lasGs---~dg~i~lWd~~~~--~~~~~~~~~g--H~~~V~---~l~f~p~~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGS---KGGDIMLWNFGIK--DKPTFIKGIG--AGGSIT---GLKFNPLNTNQFYASSMEGTTR  190 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEE---TTSCEEEECSSCC--SCCEEECCCS--SSCCCC---EEEECSSCTTEEEEECSSSCEE
T ss_pred             CEEEEEEeCCCCCEEEEEe---CCCEEEEEECCCC--CceeEEEccC--CCCCEE---EEEEeCCCCCEEEEEeCCCEEE
Confidence            355677777 555444332   2577777755332  1222222111  011111   1256665555666766778777


Q ss_pred             EEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceee
Q 008927          169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAF  248 (548)
Q Consensus       169 ~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~  248 (548)
                      +.|+.+  +..+.+..... ....+..+.|+|||+.|+....+         ..|.++|+.+..   ...+....+.+..
T Consensus       191 iwd~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~d---------g~i~~wd~~~~~---~~~~~~h~~~v~~  255 (435)
T 4e54_B          191 LQDFKG--NILRVFASSDT-INIWFCSLDVSASSRMVVTGDNV---------GNVILLNMDGKE---LWNLRMHKKKVTH  255 (435)
T ss_dssp             EEETTS--CEEEEEECCSS-CSCCCCCEEEETTTTEEEEECSS---------SBEEEEESSSCB---CCCSBCCSSCEEE
T ss_pred             EeeccC--CceeEEeccCC-CCccEEEEEECCCCCEEEEEeCC---------CcEeeeccCcce---eEEEecccceEEe
Confidence            778876  44444433210 12334567899999987664322         358888998766   5555544455677


Q ss_pred             eEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEE
Q 008927          249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH  328 (548)
Q Consensus       249 p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly  328 (548)
                      ..|+|+++.++.....       ...|.+.|+.............+..    ..+....|+|||++++.... +|  .|.
T Consensus       256 v~~~p~~~~~~~s~s~-------d~~v~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~spdg~~l~s~~~-D~--~i~  321 (435)
T 4e54_B          256 VALNPCCDWFLATASV-------DQTVKIWDLRQVRGKASFLYSLPHR----HPVNAACFSPDGARLLTTDQ-KS--EIR  321 (435)
T ss_dssp             EEECTTCSSEEEEEET-------TSBCCEEETTTCCSSSCCSBCCBCS----SCEEECCBCTTSSEEEEEES-SS--CEE
T ss_pred             eeecCCCceEEEEecC-------cceeeEEecccccccceEEEeeecc----ccccceeECCCCCeeEEEcC-CC--EEE
Confidence            8999999876655422       2356677876422111111111211    35677889999995555444 44  456


Q ss_pred             EEeccCCee-EeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC---------eEEEEEEECCCCceE-eec
Q 008927          329 KWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---------RSYLGILDDFGHSLS-LLD  397 (548)
Q Consensus       329 ~~d~~~g~~-~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g---------~~~L~~~dl~~g~~~-~l~  397 (548)
                      ++++.+++. ..+.......  ..+... ....+.+   ++..++.....++         ...|.++|..+|+.. .+.
T Consensus       322 iwd~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~  395 (435)
T 4e54_B          322 VYSASQWDCPLGLIPHPHRH--FQHLTP-IKAAWHP---RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY  395 (435)
T ss_dssp             EEESSSSSSEEEECCCCCCC--CSSSCC-CBCEECS---SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC
T ss_pred             EEECCCCccceEEecccccc--ccccee-EEEEEcC---CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe
Confidence            667666653 2222111000  001000 0112222   3333433322211         124777888888754 333


Q ss_pred             CCC-cee---EeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          398 IPF-TDI---DNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       398 ~~~-~~~---~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      .+. ..+   ..+++++..|+ .++    -..|.++++++++
T Consensus       396 ~~~~~~v~s~~~fspdg~~la-sg~----d~~i~iW~~~~gk  432 (435)
T 4e54_B          396 DPESSGISSLNEFNPMGDTLA-SAM----GYHILIWSQQEAR  432 (435)
T ss_dssp             CSSCCCCCCEEEECTTSSCEE-EEC----SSEEEECCCC---
T ss_pred             CCCCCcEEEEEEECCCCCEEE-EEc----CCcEEEEECCcCe
Confidence            322 122   23467776543 332    1368888887765

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.66  E-value=1e-05  Score=86.91  Aligned_cols=246  Identities=8%  Similarity=0.058  Sum_probs=139.0

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeC--CCCCCCc-eecCCCCCCCCceecceeeCC----CCCEEEEEEeccCCCCCCcee
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSI--DSKDSSP-LPITPDYGEPLVSYADGIFDP----RFNRYVTVREDRRQDALNSTT  221 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~--~~~~~~~-~~lT~~~~~~~~~~~~~~~Sp----DG~~i~~v~~~~~~~~~~~~~  221 (548)
                      .|++||+.|+-.+ .++.|.++|+  ..  ++. ..|..+     .....+.+||    ||++|+...+..        .
T Consensus       185 ~~spdg~~l~v~~-~d~~V~v~D~~~~t--~~~~~~i~~g-----~~p~~va~sp~~~~dg~~l~v~~~~~--------~  248 (543)
T 1nir_A          185 RMSASGRYLLVIG-RDARIDMIDLWAKE--PTKVAEIKIG-----IEARSVESSKFKGYEDRYTIAGAYWP--------P  248 (543)
T ss_dssp             EECTTSCEEEEEE-TTSEEEEEETTSSS--CEEEEEEECC-----SEEEEEEECCSTTCTTTEEEEEEEES--------S
T ss_pred             EECCCCCEEEEEC-CCCeEEEEECcCCC--CcEEEEEecC-----CCcceEEeCCCcCCCCCEEEEEEccC--------C
Confidence            5777777776665 4589999999  44  332 333322     2334567999    999876654321        4


Q ss_pred             EEEEEECCCCCccCcEEeee-c---------CC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeE
Q 008927          222 EIVAIALNGQNIQEPKVLVS-G---------SD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV  290 (548)
Q Consensus       222 ~l~~idl~~g~~~~~~~L~~-~---------~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~  290 (548)
                      .|.++|..+++.  .+.+.. +         .+ ......+|||++.+++.. .      ....|+++|......+. ..
T Consensus       249 ~v~v~D~~t~~~--~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~-~------~~g~i~vvd~~~~~~l~-~~  318 (543)
T 1nir_A          249 QFAIMDGETLEP--KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV-K------ETGKVLLVNYKDIDNLT-VT  318 (543)
T ss_dssp             EEEEEETTTCCE--EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE-T------TTTEEEEEECTTSSSCE-EE
T ss_pred             eEEEEecccccc--ceeecccCcccCccccccCCceEEEEECCCCCEEEEEE-C------CCCeEEEEEecCCCcce-eE
Confidence            688899998872  223321 1         11 345568999999775433 2      24689999997432221 12


Q ss_pred             EEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCE
Q 008927          291 CVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNL  370 (548)
Q Consensus       291 ~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~  370 (548)
                      .+...     .......|+|||+.++++...++  .|.++|+++++.....+.. ....+.+  +. .+ ..|   +++.
T Consensus       319 ~i~~~-----~~~~~~~~spdg~~l~va~~~~~--~v~v~D~~tg~l~~~i~~g-~~ph~g~--g~-~~-~~p---~~g~  383 (543)
T 1nir_A          319 SIGAA-----PFLHDGGWDSSHRYFMTAANNSN--KVAVIDSKDRRLSALVDVG-KTPHPGR--GA-NF-VHP---KYGP  383 (543)
T ss_dssp             EEECC-----SSCCCEEECTTSCEEEEEEGGGT--EEEEEETTTTEEEEEEECS-SSBCCTT--CE-EE-EET---TTEE
T ss_pred             EeccC-----cCccCceECCCCCEEEEEecCCC--eEEEEECCCCeEEEeeccC-CCCCCCC--Cc-cc-CCC---CCcc
Confidence            33321     34667899999995555543233  5777999898865543211 0011111  11 11 122   5566


Q ss_pred             EEEEEEeCCeEEEEEEECCC-------Cc-eEeecCCCce--eEeeeecCCEEEEEEe-cCC--CCCeEEEEEcCCCce
Q 008927          371 IACSYRQNGRSYLGILDDFG-------HS-LSLLDIPFTD--IDNITLGNDCLFVEGA-SGV--EPSSVAKVTLDDHKL  436 (548)
Q Consensus       371 l~~~~~~~g~~~L~~~dl~~-------g~-~~~l~~~~~~--~~~~s~d~~~l~~~~s-s~~--~p~~l~~~d~~~~~~  436 (548)
                      ++++.. .+...|.++|.++       .+ ++.|..+...  .-.++++++.||+... +++  ....|.++|.++++.
T Consensus       384 ~~~s~~-~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~  461 (543)
T 1nir_A          384 VWSTSH-LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA  461 (543)
T ss_dssp             EEEEEB-SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred             EEEecc-CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence            655432 2334577777766       33 3445433222  2223788888775431 111  134899999987763

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.65  E-value=3.1e-05  Score=79.31  Aligned_cols=238  Identities=6%  Similarity=-0.015  Sum_probs=136.8

Q ss_pred             eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (548)
Q Consensus       150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~  229 (548)
                      +.++++.++... .++.|++.++.+  ++...+....  ....+..+.|+|||+.|+....+         ..|.++|+.
T Consensus        99 ~~~s~~~l~~~~-~d~~v~lw~~~~--~~~~~~~~~~--~~~~v~~v~~s~~~~~l~~~~~d---------g~i~iwd~~  164 (401)
T 4aez_A           99 LDWSNLNVVAVA-LERNVYVWNADS--GSVSALAETD--ESTYVASVKWSHDGSFLSVGLGN---------GLVDIYDVE  164 (401)
T ss_dssp             EEECTTSEEEEE-ETTEEEEEETTT--CCEEEEEECC--TTCCEEEEEECTTSSEEEEEETT---------SCEEEEETT
T ss_pred             EeecCCCEEEEE-CCCeEEEeeCCC--CcEeEeeecC--CCCCEEEEEECCCCCEEEEECCC---------CeEEEEECc
Confidence            445555444332 467899999887  5554443321  12346678899999988775433         358888998


Q ss_pred             CCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (548)
Q Consensus       230 ~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws  309 (548)
                      +++.  .+.+......+....|  +++.|+...        ....|.+.++...+.  ....+.+..    ..+....|+
T Consensus       165 ~~~~--~~~~~~~~~~v~~~~~--~~~~l~~~~--------~dg~i~i~d~~~~~~--~~~~~~~~~----~~v~~~~~~  226 (401)
T 4aez_A          165 SQTK--LRTMAGHQARVGCLSW--NRHVLSSGS--------RSGAIHHHDVRIANH--QIGTLQGHS----SEVCGLAWR  226 (401)
T ss_dssp             TCCE--EEEECCCSSCEEEEEE--ETTEEEEEE--------TTSEEEEEETTSSSC--EEEEEECCS----SCEEEEEEC
T ss_pred             CCeE--EEEecCCCCceEEEEE--CCCEEEEEc--------CCCCEEEEecccCcc--eeeEEcCCC----CCeeEEEEc
Confidence            8761  3334333344555566  567666443        135789999874332  233344433    467788999


Q ss_pred             cCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECC
Q 008927          310 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF  389 (548)
Q Consensus       310 pDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~  389 (548)
                      |||++++.... +|  .|..+|+.+++.......   ..  .   ......|.|   ++..++++........|.++|+.
T Consensus       227 ~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~---~~--~---~v~~~~~~p---~~~~ll~~~~gs~d~~i~i~d~~  292 (401)
T 4aez_A          227 SDGLQLASGGN-DN--VVQIWDARSSIPKFTKTN---HN--A---AVKAVAWCP---WQSNLLATGGGTMDKQIHFWNAA  292 (401)
T ss_dssp             TTSSEEEEEET-TS--CEEEEETTCSSEEEEECC---CS--S---CCCEEEECT---TSTTEEEEECCTTTCEEEEEETT
T ss_pred             CCCCEEEEEeC-CC--eEEEccCCCCCccEEecC---Cc--c---eEEEEEECC---CCCCEEEEecCCCCCEEEEEECC
Confidence            99995555544 34  467778777654332211   01  1   112245554   56667665431123457788988


Q ss_pred             CCceE-eecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          390 GHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       390 ~g~~~-~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      +++.. .+.. ...+..+  +++++.++.....  ....|.++|+.+++.
T Consensus       293 ~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~--~dg~i~v~~~~~~~~  339 (401)
T 4aez_A          293 TGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGF--PDNNLSIWSYSSSGL  339 (401)
T ss_dssp             TCCEEEEEEC-SSCEEEEEECSSSSEEEEEECT--TTCEEEEEEEETTEE
T ss_pred             CCCEEEEEeC-CCcEEEEEECCCCCeEEEEeec--CCCcEEEEecCCccc
Confidence            87654 3332 2334444  6777776655432  235788888776653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.65  E-value=2.7e-06  Score=95.45  Aligned_cols=238  Identities=11%  Similarity=0.031  Sum_probs=139.6

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +|+|++..|+... .++.|.+.++..+ ...+.++..    ...+..+.|+|||+.|+....+         ..|.++|+
T Consensus        20 ~~sp~~~~la~~~-~~g~v~iwd~~~~-~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d---------g~i~vw~~   84 (814)
T 3mkq_A           20 DFHPTEPWVLTTL-YSGRVEIWNYETQ-VEVRSIQVT----ETPVRAGKFIARKNWIIVGSDD---------FRIRVFNY   84 (814)
T ss_dssp             EECSSSSEEEEEE-TTSEEEEEETTTT-EEEEEEECC----SSCEEEEEEEGGGTEEEEEETT---------SEEEEEET
T ss_pred             EECCCCCEEEEEe-CCCEEEEEECCCC-ceEEEEecC----CCcEEEEEEeCCCCEEEEEeCC---------CeEEEEEC
Confidence            6778888887765 4677888888651 233445433    2346678899999998876433         46889999


Q ss_pred             CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      .+++.  ...+....+.+....|||||++|+...        ....|.+.+++.+..  ....+.+..    ..+....|
T Consensus        85 ~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~--------~dg~i~vw~~~~~~~--~~~~~~~~~----~~v~~~~~  148 (814)
T 3mkq_A           85 NTGEK--VVDFEAHPDYIRSIAVHPTKPYVLSGS--------DDLTVKLWNWENNWA--LEQTFEGHE----HFVMCVAF  148 (814)
T ss_dssp             TTCCE--EEEEECCSSCEEEEEECSSSSEEEEEE--------TTSEEEEEEGGGTSE--EEEEEECCS----SCEEEEEE
T ss_pred             CCCcE--EEEEecCCCCEEEEEEeCCCCEEEEEc--------CCCEEEEEECCCCce--EEEEEcCCC----CcEEEEEE
Confidence            98872  334444455677889999999988544        135788889875322  233444433    45778899


Q ss_pred             Cc-CCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927          309 SS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (548)
Q Consensus       309 sp-DG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d  387 (548)
                      +| ||++++.... +|  .|..+++.+++........  ...+     .....+.| .+++. ++++...++  .|.++|
T Consensus       149 ~p~~~~~l~~~~~-dg--~v~vwd~~~~~~~~~~~~~--~~~~-----v~~~~~~~-~~~~~-~l~~~~~dg--~i~~~d  214 (814)
T 3mkq_A          149 NPKDPSTFASGCL-DR--TVKVWSLGQSTPNFTLTTG--QERG-----VNYVDYYP-LPDKP-YMITASDDL--TIKIWD  214 (814)
T ss_dssp             ETTEEEEEEEEET-TS--EEEEEETTCSSCSEEEECC--CTTC-----CCEEEECC-STTCC-EEEEECTTS--EEEEEE
T ss_pred             EcCCCCEEEEEeC-CC--eEEEEECCCCcceeEEecC--CCCC-----EEEEEEEE-CCCCC-EEEEEeCCC--EEEEEE
Confidence            99 7775555544 44  4666777665432222110  0001     11123331 00334 444444444  566778


Q ss_pred             CCCCceE-eecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          388 DFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       388 l~~g~~~-~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      +.+++.. .+......+..+  ++++..++. ++.   ...|.++|+.+++
T Consensus       215 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~---dg~v~vwd~~~~~  261 (814)
T 3mkq_A          215 YQTKSCVATLEGHMSNVSFAVFHPTLPIIIS-GSE---DGTLKIWNSSTYK  261 (814)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECSSSSEEEE-EET---TSCEEEEETTTCS
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE-EeC---CCeEEEEECCCCc
Confidence            8777643 343333344444  566665543 332   2567888877655

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.63  E-value=3.6e-06  Score=87.85  Aligned_cols=269  Identities=10%  Similarity=-0.042  Sum_probs=138.7

Q ss_pred             CCCCCcCCHHHHhcCCCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeE
Q 008927           73 GSWKSPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFR  151 (548)
Q Consensus        73 g~w~spit~~~l~~~~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~  151 (548)
                      +.|+.+.....+......+..+.++| |+.++.....   +|...||.+....+...+.+.....  ...+.   .-.|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~--~~~v~---~~~~s  158 (450)
T 2vdu_B           87 TAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADS---DKSLLVFDVDKTSKNVLKLRKRFCF--SKRPN---AISIA  158 (450)
T ss_dssp             -------------CCCCCEEEEEECTTSSEEEEEEGG---GTEEEEEEECSSSSSCEEEEEEEEC--SSCEE---EEEEC
T ss_pred             cCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECC---CCeEEEEECcCCCCceeeeeecccC--CCCce---EEEEc
Confidence            33444433333333334678889999 7776666543   5777888876211122233321100  01111   13566


Q ss_pred             EECCEEEEEeCCCCeEEEEeCCCCCCCce-----ecCCCCCCCCceecceeeCCC---CCEEEEEEeccCCCCCCceeEE
Q 008927          152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPL-----PITPDYGEPLVSYADGIFDPR---FNRYVTVREDRRQDALNSTTEI  223 (548)
Q Consensus       152 ~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-----~lT~~~~~~~~~~~~~~~SpD---G~~i~~v~~~~~~~~~~~~~~l  223 (548)
                      +++..|+... .++.+|.+++..  ++..     .+...    ...+..+.|+||   ++.|+....+         ..|
T Consensus       159 p~~~~l~~~~-~~g~v~~~~~~~--~~~~~~~~~~~~~h----~~~v~~~~~sp~~~~~~~l~s~~~d---------~~i  222 (450)
T 2vdu_B          159 EDDTTVIIAD-KFGDVYSIDINS--IPEEKFTQEPILGH----VSMLTDVHLIKDSDGHQFIITSDRD---------EHI  222 (450)
T ss_dssp             TTSSEEEEEE-TTSEEEEEETTS--CCCSSCCCCCSEEC----SSCEEEEEEEECTTSCEEEEEEETT---------SCE
T ss_pred             CCCCEEEEEe-CCCcEEEEecCC--cccccccceeeecc----cCceEEEEEcCCCCCCcEEEEEcCC---------CcE
Confidence            7777777665 578899999875  3322     22211    123556789999   7776654332         358


Q ss_pred             EEEECCCCCccCcEE-eeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCC-------
Q 008927          224 VAIALNGQNIQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF-------  295 (548)
Q Consensus       224 ~~idl~~g~~~~~~~-L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~-------  295 (548)
                      .++|+.+++.  ... +......+....|+ ||+.|+....        ...|.+.|+.. ++.  ...+...       
T Consensus       223 ~vwd~~~~~~--~~~~~~~h~~~v~~~~~s-d~~~l~s~~~--------d~~v~vwd~~~-~~~--~~~~~~~~~~~~~~  288 (450)
T 2vdu_B          223 KISHYPQCFI--VDKWLFGHKHFVSSICCG-KDYLLLSAGG--------DDKIFAWDWKT-GKN--LSTFDYNSLIKPYL  288 (450)
T ss_dssp             EEEEESCTTC--EEEECCCCSSCEEEEEEC-STTEEEEEES--------SSEEEEEETTT-CCE--EEEEECHHHHGGGC
T ss_pred             EEEECCCCce--eeeeecCCCCceEEEEEC-CCCEEEEEeC--------CCeEEEEECCC-CcE--eeeecchhhhhhhh
Confidence            8888888761  223 22334457788999 9999885541        35788889874 542  1222100       


Q ss_pred             ----------------CCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEE-eccCCeeEeecccccccCCCcccccCc
Q 008927          296 ----------------DPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKW-IESNNEVLAIYSLDAEFSRPLWVFGIN  357 (548)
Q Consensus       296 ----------------~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~-d~~~g~~~~l~~~~~d~~~p~w~~~~~  357 (548)
                                      ...  ..+..+.|+|||+ |++.++. .+.-.||.+ +..+++.+.+......  .+.     .
T Consensus       289 ~~~~~~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~~~~~~-d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v-----~  358 (450)
T 2vdu_B          289 NDQHLAPPRFQNENNDIIE--FAVSKIIKSKNLPFVAFFVEA-TKCIIILEMSEKQKGDLALKQIITFP--YNV-----I  358 (450)
T ss_dssp             CTTSBC----------CBC--CCEEEEEECSSSSEEEEEETT-CSEEEEEEECSSSTTCEEEEEEEECS--SCE-----E
T ss_pred             hhcccccccccccccccce--EEEEEEEEeCCCCEEEEEECC-CCeEEEEEeccCCCCceeeccEeccC--Cce-----E
Confidence                            001  3456789999999 5444534 555555555 2223333322211111  111     2


Q ss_pred             ceeeeeecCCCCEEEEEEEe-C------CeEEEEEEECCCCceE
Q 008927          358 SYEIIQSHGEKNLIACSYRQ-N------GRSYLGILDDFGHSLS  394 (548)
Q Consensus       358 ~~~~~~~~~d~~~l~~~~~~-~------g~~~L~~~dl~~g~~~  394 (548)
                      .+.|.    . +.++++... +      ..-.||.++.++++++
T Consensus       359 ~~~~~----~-~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~  397 (450)
T 2vdu_B          359 SLSAH----N-DEFQVTLDNKESSGVQKNFAKFIEYNLNENSFV  397 (450)
T ss_dssp             EEEEE----T-TEEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred             EEEec----C-CcEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence            24565    3 344444332 1      1237888888777654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.63  E-value=6.5e-06  Score=83.97  Aligned_cols=281  Identities=9%  Similarity=0.043  Sum_probs=152.5

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEc----CCCCCCC-------CcccCCCCCCc-------cccceeeCCee
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKE----PAKAGDE-------PSDITPKEYAV-------RTTAQEYGGGA  149 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~----~~~~~~~-------~~~lt~~~~~~-------r~~v~~ygg~~  149 (548)
                      ..+..+.++| |..++.....   +|...||..    ...   +       ...+.. .+..       ...+.   .-.
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~~---dg~i~iw~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~---~~~  115 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGEK---NSVARLARIVETDQEG---KKYWKLTIIAELRH-PFALSASSGKTTNQVT---CLA  115 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEET---BTEEEEEEEEEC---------CEEEEEEEEEEC-CCCCC------CBCEE---EEE
T ss_pred             CceEEEEECCCCCcEEEEecC---CceEEEEEEecccCCc---cccccccccccccc-cccccccccCCCCceE---EEE
Confidence            5678899999 7724444322   477777776    332   2       122211 1110       01111   125


Q ss_pred             eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (548)
Q Consensus       150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~  229 (548)
                      |+++++.|+... .++.|++.+..+  .....+...    ...+..+.|+|+++.|+....+         ..|.++|+.
T Consensus       116 ~s~~~~~l~~~~-~dg~i~i~~~~~--~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~  179 (425)
T 1r5m_A          116 WSHDGNSIVTGV-ENGELRLWNKTG--ALLNVLNFH----RAPIVSVKWNKDGTHIISMDVE---------NVTILWNVI  179 (425)
T ss_dssp             ECTTSSEEEEEE-TTSCEEEEETTS--CEEEEECCC----CSCEEEEEECTTSSEEEEEETT---------CCEEEEETT
T ss_pred             EcCCCCEEEEEe-CCCeEEEEeCCC--CeeeeccCC----CccEEEEEECCCCCEEEEEecC---------CeEEEEECC
Confidence            666677666654 466777778554  444555543    2346678899999988775433         358888998


Q ss_pred             CCCccCcEEeeecCCc---------------eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcC
Q 008927          230 GQNIQEPKVLVSGSDF---------------YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG  294 (548)
Q Consensus       230 ~g~~~~~~~L~~~~~~---------------~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~  294 (548)
                      +++.  ...+......               .....|+|++. ++...        ....|++.++.. ++  ....+..
T Consensus       180 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~g~i~~~d~~~-~~--~~~~~~~  245 (425)
T 1r5m_A          180 SGTV--MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPG--------PKGAIFVYQITE-KT--PTGKLIG  245 (425)
T ss_dssp             TTEE--EEEECCC---------------CCCBSCCEEEETTE-EEEEC--------GGGCEEEEETTC-SS--CSEEECC
T ss_pred             CCcE--EEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEc--------CCCeEEEEEcCC-Cc--eeeeecc
Confidence            8761  2222222111               45567888865 43232        135799999884 43  2333443


Q ss_pred             CCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEE
Q 008927          295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACS  374 (548)
Q Consensus       295 ~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~  374 (548)
                      ..    ..+..+.|+|||++++.... +|  .|+.+++.+++.......   ...+     .....+.|   ++  ++++
T Consensus       246 ~~----~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~---~~~~-----i~~~~~~~---~~--~l~~  305 (425)
T 1r5m_A          246 HH----GPISVLEFNDTNKLLLSASD-DG--TLRIWHGGNGNSQNCFYG---HSQS-----IVSASWVG---DD--KVIS  305 (425)
T ss_dssp             CS----SCEEEEEEETTTTEEEEEET-TS--CEEEECSSSBSCSEEECC---CSSC-----EEEEEEET---TT--EEEE
T ss_pred             CC----CceEEEEECCCCCEEEEEcC-CC--EEEEEECCCCccceEecC---CCcc-----EEEEEECC---CC--EEEE
Confidence            33    45678899999995555444 34  466777766654332211   0111     12245553   44  4445


Q ss_pred             EEeCCeEEEEEEECCCCceEe-ecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          375 YRQNGRSYLGILDDFGHSLSL-LDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       375 ~~~~g~~~L~~~dl~~g~~~~-l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      ...++  .|+++|+.+++... +......+..+  +++++.++. ++.   ...|.++|+.+++
T Consensus       306 ~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~---dg~i~i~~~~~~~  363 (425)
T 1r5m_A          306 CSMDG--SVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAV-AFM---DGQVNVYDLKKLN  363 (425)
T ss_dssp             EETTS--EEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEE-EET---TSCEEEEECHHHH
T ss_pred             EeCCC--cEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEE-EEC---CCeEEEEECCCCc
Confidence            55455  56777887776443 33323334444  566665544 332   2578888876543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.63  E-value=8.3e-06  Score=81.21  Aligned_cols=296  Identities=7%  Similarity=-0.043  Sum_probs=149.0

Q ss_pred             CCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEEC--CEEEEEeCCC
Q 008927           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG--DTVIFSNYKD  164 (548)
Q Consensus        88 ~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~--~~i~F~~~~~  164 (548)
                      ...+..+.++| |..++.......++|...||.....   +...+...+  -...+.   .-.|++++  +.++++...+
T Consensus        18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~---~~~~~~~~~--~~~~v~---~~~~~~~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG---DLKLLREIE--KAKPIK---CGTFGATSLQQRYLATGDFG   89 (357)
T ss_dssp             SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS---SEEEEEEEE--ESSCEE---EEECTTCCTTTCCEEEEETT
T ss_pred             CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC---cccceeeec--ccCcEE---EEEEcCCCCCCceEEEecCC
Confidence            35677889999 7777665533223566677766432   322221100  011111   12455553  3445555567


Q ss_pred             CeEEEEeCCCCCC-CceecCCCCCCCCceecce------eeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcE
Q 008927          165 QRLYKHSIDSKDS-SPLPITPDYGEPLVSYADG------IFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK  237 (548)
Q Consensus       165 ~~Ly~~~~~~~~~-~~~~lT~~~~~~~~~~~~~------~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~  237 (548)
                      +.|.+.++..+ . ....+....    ..+..+      .|+||++.|+....+         ..|.++|+.+++. ...
T Consensus        90 g~i~iwd~~~~-~~~~~~~~~~~----~~v~~~~~~~~~~~s~~~~~l~~~~~d---------~~i~vwd~~~~~~-~~~  154 (357)
T 3i2n_A           90 GNLHIWNLEAP-EMPVYSVKGHK----EIINAIDGIGGLGIGEGAPEIVTGSRD---------GTVKVWDPRQKDD-PVA  154 (357)
T ss_dssp             SCEEEECTTSC-SSCSEEECCCS----SCEEEEEEESGGGCC-CCCEEEEEETT---------SCEEEECTTSCSS-CSE
T ss_pred             CeEEEEeCCCC-CccEEEEEecc----cceEEEeeccccccCCCccEEEEEeCC---------CeEEEEeCCCCCC-cce
Confidence            88888888762 2 234444331    122222      578999988765433         3588888887641 033


Q ss_pred             EeeecCC----ceee----eEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927          238 VLVSGSD----FYAF----PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (548)
Q Consensus       238 ~L~~~~~----~~~~----p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws  309 (548)
                      .+....+    ....    +.|+|||+.|+...        ....|++.++.. ++.   .......    ..+....|+
T Consensus       155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~--------~d~~i~i~d~~~-~~~---~~~~~~~----~~v~~~~~~  218 (357)
T 3i2n_A          155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY--------DNGDIKLFDLRN-MAL---RWETNIK----NGVCSLEFD  218 (357)
T ss_dssp             EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE--------TTSEEEEEETTT-TEE---EEEEECS----SCEEEEEES
T ss_pred             eccccCCCCCCceEEEEEEeccCCCCCEEEEEc--------cCCeEEEEECcc-Cce---eeecCCC----CceEEEEcC
Confidence            3332111    2222    23899999887544        135799999984 432   2222222    457788999


Q ss_pred             c---CCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927          310 S---KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (548)
Q Consensus       310 p---DG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~  386 (548)
                      |   +++++++... +|.  |+.+|+.+++...............   ......+.|   +++.++++...++.-.||-+
T Consensus       219 ~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~---~~~~~l~~~~~dg~i~iwd~  289 (357)
T 3i2n_A          219 RKDISMNKLVATSL-EGK--FHVFDMRTQHPTKGFASVSEKAHKS---TVWQVRHLP---QNRELFLTAGGAGGLHLWKY  289 (357)
T ss_dssp             CSSSSCCEEEEEES-TTE--EEEEEEEEEETTTEEEEEEEECCSS---CEEEEEEET---TEEEEEEEEETTSEEEEEEE
T ss_pred             CCCCCCCEEEEECC-CCe--EEEEeCcCCCcccceeeeccCCCcC---CEEEEEECC---CCCcEEEEEeCCCcEEEeec
Confidence            9   8885555544 454  5555554443211110000000111   112245553   55546777777776666655


Q ss_pred             ECCCCc------------------eEeecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCC
Q 008927          387 DDFGHS------------------LSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDH  434 (548)
Q Consensus       387 dl~~g~------------------~~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~  434 (548)
                      +.....                  +..+......+..+  +++++.+++.++.   -..|.++|+.+.
T Consensus       290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~---d~~i~iw~~~~~  354 (357)
T 3i2n_A          290 EYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF---DQTVRVLIVTKL  354 (357)
T ss_dssp             ECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEET---TSEEEEEEECC-
T ss_pred             CCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecC---CCcEEEEECCCc
Confidence            532111                  11122222234443  5677766655543   246777776543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.62  E-value=2.8e-05  Score=79.60  Aligned_cols=278  Identities=9%  Similarity=-0.039  Sum_probs=151.2

Q ss_pred             CceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEEEEe
Q 008927           92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS  171 (548)
Q Consensus        92 ~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~~~  171 (548)
                      ..+.++ ++.++-...    +|...||.....   +...+.....  ...+.   .-+|++++..|+... .++.|.+.+
T Consensus        97 ~~~~~s-~~~l~~~~~----d~~v~lw~~~~~---~~~~~~~~~~--~~~v~---~v~~s~~~~~l~~~~-~dg~i~iwd  162 (401)
T 4aez_A           97 NLLDWS-NLNVVAVAL----ERNVYVWNADSG---SVSALAETDE--STYVA---SVKWSHDGSFLSVGL-GNGLVDIYD  162 (401)
T ss_dssp             BCEEEC-TTSEEEEEE----TTEEEEEETTTC---CEEEEEECCT--TCCEE---EEEECTTSSEEEEEE-TTSCEEEEE
T ss_pred             EEEeec-CCCEEEEEC----CCeEEEeeCCCC---cEeEeeecCC--CCCEE---EEEECCCCCEEEEEC-CCCeEEEEE
Confidence            345666 666655432    466666765332   3333322110  11111   125667777666654 567888888


Q ss_pred             CCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeE
Q 008927          172 IDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPR  250 (548)
Q Consensus       172 ~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~  250 (548)
                      +..  ++. +.+...    ...+..+.|  +++.|+....+         ..|.++|+..... ....+......+....
T Consensus       163 ~~~--~~~~~~~~~~----~~~v~~~~~--~~~~l~~~~~d---------g~i~i~d~~~~~~-~~~~~~~~~~~v~~~~  224 (401)
T 4aez_A          163 VES--QTKLRTMAGH----QARVGCLSW--NRHVLSSGSRS---------GAIHHHDVRIANH-QIGTLQGHSSEVCGLA  224 (401)
T ss_dssp             TTT--CCEEEEECCC----SSCEEEEEE--ETTEEEEEETT---------SEEEEEETTSSSC-EEEEEECCSSCEEEEE
T ss_pred             CcC--CeEEEEecCC----CCceEEEEE--CCCEEEEEcCC---------CCEEEEecccCcc-eeeEEcCCCCCeeEEE
Confidence            876  433 444432    234556667  55665554322         4688889985430 0233343444567789


Q ss_pred             ECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEE
Q 008927          251 MDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHK  329 (548)
Q Consensus       251 ~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~  329 (548)
                      |+|||+.|+....        ...|.+.|+.. ++  ....+....    ..+..+.|+|+|. +++.... .....|..
T Consensus       225 ~~~~~~~l~s~~~--------d~~v~iwd~~~-~~--~~~~~~~~~----~~v~~~~~~p~~~~ll~~~~g-s~d~~i~i  288 (401)
T 4aez_A          225 WRSDGLQLASGGN--------DNVVQIWDARS-SI--PKFTKTNHN----AAVKAVAWCPWQSNLLATGGG-TMDKQIHF  288 (401)
T ss_dssp             ECTTSSEEEEEET--------TSCEEEEETTC-SS--EEEEECCCS----SCCCEEEECTTSTTEEEEECC-TTTCEEEE
T ss_pred             EcCCCCEEEEEeC--------CCeEEEccCCC-CC--ccEEecCCc----ceEEEEEECCCCCCEEEEecC-CCCCEEEE
Confidence            9999998885542        34688999874 43  233344333    5678899999988 7776531 11235778


Q ss_pred             EeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEE-eCCeEEEEEEECCCCceEee---cCCCceeEe
Q 008927          330 WIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHSLSLL---DIPFTDIDN  405 (548)
Q Consensus       330 ~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~-~~g~~~L~~~dl~~g~~~~l---~~~~~~~~~  405 (548)
                      +|+.+++.........    +     .....|.|   +++.|+.... .++.  |.++|+.+++...+   ......+..
T Consensus       289 ~d~~~~~~~~~~~~~~----~-----v~~~~~s~---~~~~l~~~~g~~dg~--i~v~~~~~~~~~~~~~~~~h~~~v~~  354 (401)
T 4aez_A          289 WNAATGARVNTVDAGS----Q-----VTSLIWSP---HSKEIMSTHGFPDNN--LSIWSYSSSGLTKQVDIPAHDTRVLY  354 (401)
T ss_dssp             EETTTCCEEEEEECSS----C-----EEEEEECS---SSSEEEEEECTTTCE--EEEEEEETTEEEEEEEEECCSSCCCE
T ss_pred             EECCCCCEEEEEeCCC----c-----EEEEEECC---CCCeEEEEeecCCCc--EEEEecCCccceeEEEecCCCCCEEE
Confidence            8887776543332111    1     12245554   6666654322 3454  55556656654432   222223333


Q ss_pred             e--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          406 I--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       406 ~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      +  ++++..|+.. +.   ...|.++++.+++
T Consensus       355 ~~~s~dg~~l~s~-~~---dg~i~iw~~~~~~  382 (401)
T 4aez_A          355 SALSPDGRILSTA-AS---DENLKFWRVYDGD  382 (401)
T ss_dssp             EEECTTSSEEEEE-CT---TSEEEEEECCC--
T ss_pred             EEECCCCCEEEEE-eC---CCcEEEEECCCCc
Confidence            3  6677765443 22   3678888887765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.62  E-value=1.7e-05  Score=82.02  Aligned_cols=257  Identities=8%  Similarity=-0.032  Sum_probs=133.5

Q ss_pred             ECCEEEEEeCCC----CeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEecc-CCCCCCceeEEEEE
Q 008927          153 FGDTVIFSNYKD----QRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDR-RQDALNSTTEIVAI  226 (548)
Q Consensus       153 ~~~~i~F~~~~~----~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~-~~~~~~~~~~l~~i  226 (548)
                      ++.++|-.+...    +.|+++|++.  .+. ..|..+     ..- .+.+||||++|+...... +...++..+.|.+|
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t--~~vv~~I~vG-----~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~Vsvi  154 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGST--GRILGMTDGG-----FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVF  154 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTT--TEEEEEEEEC-----SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCC--CEEEEEEECC-----CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEE
Confidence            455666666443    6899999987  433 334332     123 678999999875543210 00000123579999


Q ss_pred             ECCCCCccCcEEeeec--C-----CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcC-----
Q 008927          227 ALNGQNIQEPKVLVSG--S-----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-----  294 (548)
Q Consensus       227 dl~~g~~~~~~~L~~~--~-----~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~-----  294 (548)
                      |+.+++.  ...|.-+  .     ..-....+||||++|+ +....     ....|.++|+.. +++.....+.+     
T Consensus       155 D~~t~~v--v~~I~v~g~~r~~~g~~P~~~~~spDGk~ly-V~n~~-----~~~~VsVID~~t-~kvv~~I~v~g~~~~~  225 (426)
T 3c75_H          155 DPVTFLP--IADIELPDAPRFLVGTYQWMNALTPDNKNLL-FYQFS-----PAPAVGVVDLEG-KTFDRMLDVPDCYHIF  225 (426)
T ss_dssp             CTTTCCE--EEEEEETTCCCCCBSCCGGGSEECTTSSEEE-EEECS-----SSCEEEEEETTT-TEEEEEEECCSEEEEE
T ss_pred             ECCCCcE--EEEEECCCccccccCCCcceEEEcCCCCEEE-EEecC-----CCCeEEEEECCC-CeEEEEEEcCCceeec
Confidence            9999872  2333322  1     1123458999999875 54221     135688888774 43211111100     


Q ss_pred             --C---------C---------CCcc-------------cCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEee
Q 008927          295 --F---------D---------PTIV-------------ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAI  340 (548)
Q Consensus       295 --~---------~---------~~~~-------------~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l  340 (548)
                        +         +         ....             .....+.+++||+ ++|++.  .+  .++.+|..+++.+.+
T Consensus       226 p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~--~g--~V~ViD~~~~~~~v~  301 (426)
T 3c75_H          226 PASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY--TG--KIFQADLTAEGATFR  301 (426)
T ss_dssp             EEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT--TS--EEEEEEECSSCEEEC
T ss_pred             cCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC--CC--cEEEEeccCCceEEe
Confidence              0         0         0000             0001234566666 555543  22  578888766554322


Q ss_pred             ccc----ccccCCCccccc-CcceeeeeecCCCCEEEEEEEeC-------CeEEEEEEECCCCceE-eecCCCcee-Eee
Q 008927          341 YSL----DAEFSRPLWVFG-INSYEIIQSHGEKNLIACSYRQN-------GRSYLGILDDFGHSLS-LLDIPFTDI-DNI  406 (548)
Q Consensus       341 ~~~----~~d~~~p~w~~~-~~~~~~~~~~~d~~~l~~~~~~~-------g~~~L~~~dl~~g~~~-~l~~~~~~~-~~~  406 (548)
                      .+.    .... ...|..+ ...+.+.+   +++++|+.....       +...|.++|+.+.++. .+..+..-. -.+
T Consensus       302 ~~~~~~~~~~i-~~g~~p~g~~~va~s~---dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~  377 (426)
T 3c75_H          302 APIEALTEAER-ADDWRPGGWQQTAYHR---QSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINV  377 (426)
T ss_dssp             CCEESSCTTTG-GGTEEECSSSCEEEEG---GGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEE
T ss_pred             eeeeecccccc-ccccccCCceeeEEcC---CCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEE
Confidence            110    0000 0122221 11234544   778887765432       3468999999988754 454322111 123


Q ss_pred             eecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          407 TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       407 s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      ++|++.++|+...  ....|.++|+.+++.
T Consensus       378 spDg~~~lyv~n~--~s~~VsVID~~t~kv  405 (426)
T 3c75_H          378 SQDAEPLLYALSA--GTQTLHIYDAATGEE  405 (426)
T ss_dssp             CCSSSCEEEEEET--TTTEEEEEETTTCCE
T ss_pred             ccCCCEEEEEEcC--CCCeEEEEECCCCCE
Confidence            7888834455542  247899999988874

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.61  E-value=3.3e-06  Score=83.37  Aligned_cols=233  Identities=13%  Similarity=0.148  Sum_probs=128.5

Q ss_pred             CeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       147 g~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      |..|.++++.|+|++..++.|++++.+   ++.+.+...    ......+.++|||+.+++  +..       ...|+++
T Consensus        49 gp~~~~~g~~l~~~d~~~~~i~~~~~~---g~~~~~~~~----~~~~~gl~~d~dG~l~v~--~~~-------~~~v~~~  112 (305)
T 3dr2_A           49 GPAWWEAQRTLVWSDLVGRRVLGWRED---GTVDVLLDA----TAFTNGNAVDAQQRLVHC--EHG-------RRAITRS  112 (305)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEETT---SCEEEEEES----CSCEEEEEECTTSCEEEE--ETT-------TTEEEEE
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEeCC---CCEEEEeCC----CCccceeeECCCCCEEEE--ECC-------CCEEEEE
Confidence            457888888999999888899999985   445544432    123456789999985443  322       1368999


Q ss_pred             ECCCCCccCcEEeeec-CC----ceeeeEECCCCCEEEEEEec-----C-----CCC-CCCCceEEEEEecCCCceeeeE
Q 008927          227 ALNGQNIQEPKVLVSG-SD----FYAFPRMDPRGERMAWIEWH-----H-----PNM-PWDKAELWVGYISENGDVYKRV  290 (548)
Q Consensus       227 dl~~g~~~~~~~L~~~-~~----~~~~p~~SPDGk~La~~~~~-----~-----~~~-p~~~~~L~v~~~~~~g~~~~~~  290 (548)
                      +.+ |+   .+.+... ..    ......++|||+ | |++..     .     ... ......||.++.+ +|++.   
T Consensus       113 ~~~-g~---~~~~~~~~~~~~~~~~~~i~~d~dG~-l-~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~-~g~~~---  182 (305)
T 3dr2_A          113 DAD-GQ---AHLLVGRYAGKRLNSPNDLIVARDGA-I-WFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD-GSPLQ---  182 (305)
T ss_dssp             CTT-SC---EEEEECEETTEECSCCCCEEECTTSC-E-EEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS-SCCCE---
T ss_pred             CCC-CC---EEEEEeccCCCccCCCCCEEECCCCC-E-EEeCcCCCccccccccccccccCCCeEEEEcCC-CCcEE---
Confidence            987 55   5555422 11    123568999998 4 34210     0     000 0013578888875 35432   


Q ss_pred             EEcCCCCCcccCCcCceECcCCcEEEEEeCCC---CeeeEEEEeccCCeeE--eecccccccCCCcccccCcceeeeeec
Q 008927          291 CVAGFDPTIVESPTEPKWSSKGELFFVTDRKN---GFWNLHKWIESNNEVL--AIYSLDAEFSRPLWVFGINSYEIIQSH  365 (548)
Q Consensus       291 ~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~---g~~~Ly~~d~~~g~~~--~l~~~~~d~~~p~w~~~~~~~~~~~~~  365 (548)
                      .+.+ .    .....+.|+|||+.+|+++...   +...|++++++++...  .+... .....|      ..+...+  
T Consensus       183 ~~~~-~----~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-~~~~~p------dgi~~d~--  248 (305)
T 3dr2_A          183 RMAD-L----DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-VPDGLP------DGFCVDR--  248 (305)
T ss_dssp             EEEE-E----SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC-CSSSCC------CSEEECT--
T ss_pred             EEec-C----CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-CCCCCC------CeEEECC--
Confidence            2222 1    2345678999999444444311   2357888887655421  11100 001111      1133331  


Q ss_pred             CCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCceeEe--eeecCCEEEEEEecCCCCCeEEEEEc
Q 008927          366 GEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDN--ITLGNDCLFVEGASGVEPSSVAKVTL  431 (548)
Q Consensus       366 ~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~~--~s~d~~~l~~~~ss~~~p~~l~~~d~  431 (548)
                       +++ |++.. .   ..|++++.++.....+..+.. ...  ++++++.|++..+     ..||++++
T Consensus       249 -~G~-lwv~~-~---~gv~~~~~~g~~~~~~~~~~~-~~~~~f~~d~~~L~it~~-----~~l~~~~~  304 (305)
T 3dr2_A          249 -GGW-LWSSS-G---TGVCVFDSDGQLLGHIPTPGT-ASNCTFDQAQQRLFITGG-----PCLWMLPL  304 (305)
T ss_dssp             -TSC-EEECC-S---SEEEEECTTSCEEEEEECSSC-CCEEEECTTSCEEEEEET-----TEEEEEEC
T ss_pred             -CCC-EEEec-C---CcEEEECCCCCEEEEEECCCc-eeEEEEeCCCCEEEEEcC-----CeEEEEEC
Confidence             444 55433 2   248999986655566655432 222  2456677766553     37888764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.60  E-value=6.3e-06  Score=92.41  Aligned_cols=246  Identities=11%  Similarity=0.077  Sum_probs=144.2

Q ss_pred             CCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCe
Q 008927           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR  166 (548)
Q Consensus        88 ~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~  166 (548)
                      ...+..+.++| |..++...    .+|...||.....  ...+.+......++       ...|++++..|+... .++.
T Consensus        13 ~~~v~~i~~sp~~~~la~~~----~~g~v~iwd~~~~--~~~~~~~~~~~~v~-------~~~~s~~~~~l~~~~-~dg~   78 (814)
T 3mkq_A           13 SDRVKGIDFHPTEPWVLTTL----YSGRVEIWNYETQ--VEVRSIQVTETPVR-------AGKFIARKNWIIVGS-DDFR   78 (814)
T ss_dssp             CSCEEEEEECSSSSEEEEEE----TTSEEEEEETTTT--EEEEEEECCSSCEE-------EEEEEGGGTEEEEEE-TTSE
T ss_pred             CCceEEEEECCCCCEEEEEe----CCCEEEEEECCCC--ceEEEEecCCCcEE-------EEEEeCCCCEEEEEe-CCCe
Confidence            35677889999 77776654    2577777765432  22333432221221       236888888888876 4678


Q ss_pred             EEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCc
Q 008927          167 LYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF  245 (548)
Q Consensus       167 Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~  245 (548)
                      |.+.++..  ++. ..+...    ...+..+.|+|||+.|+....+         ..|.++|+.++.. ....+......
T Consensus        79 i~vw~~~~--~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d---------g~i~vw~~~~~~~-~~~~~~~~~~~  142 (814)
T 3mkq_A           79 IRVFNYNT--GEKVVDFEAH----PDYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENNWA-LEQTFEGHEHF  142 (814)
T ss_dssp             EEEEETTT--CCEEEEEECC----SSCEEEEEECSSSSEEEEEETT---------SEEEEEEGGGTSE-EEEEEECCSSC
T ss_pred             EEEEECCC--CcEEEEEecC----CCCEEEEEEeCCCCEEEEEcCC---------CEEEEEECCCCce-EEEEEcCCCCc
Confidence            88888876  443 444433    2346678899999988765433         3688888887630 02333333445


Q ss_pred             eeeeEECC-CCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc--CCcEEEEEeCCC
Q 008927          246 YAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS--KGELFFVTDRKN  322 (548)
Q Consensus       246 ~~~p~~SP-DGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp--DG~L~~~sd~~~  322 (548)
                      .....|+| ||+.|+....        ...|.+.++.. +.  ....+.... .  ..+....|+|  ||.++++... +
T Consensus       143 v~~~~~~p~~~~~l~~~~~--------dg~v~vwd~~~-~~--~~~~~~~~~-~--~~v~~~~~~~~~~~~~l~~~~~-d  207 (814)
T 3mkq_A          143 VMCVAFNPKDPSTFASGCL--------DRTVKVWSLGQ-ST--PNFTLTTGQ-E--RGVNYVDYYPLPDKPYMITASD-D  207 (814)
T ss_dssp             EEEEEEETTEEEEEEEEET--------TSEEEEEETTC-SS--CSEEEECCC-T--TCCCEEEECCSTTCCEEEEECT-T
T ss_pred             EEEEEEEcCCCCEEEEEeC--------CCeEEEEECCC-Cc--ceeEEecCC-C--CCEEEEEEEECCCCCEEEEEeC-C
Confidence            67789999 8887775441        35788999874 33  122232221 1  4567789999  8885555544 4


Q ss_pred             CeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE
Q 008927          323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS  394 (548)
Q Consensus       323 g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~  394 (548)
                      |  .|..+|..+++........   ..+     .....|.|   +++.| ++...+|.  |.++|+.+++..
T Consensus       208 g--~i~~~d~~~~~~~~~~~~~---~~~-----v~~~~~~~---~~~~l-~~~~~dg~--v~vwd~~~~~~~  263 (814)
T 3mkq_A          208 L--TIKIWDYQTKSCVATLEGH---MSN-----VSFAVFHP---TLPII-ISGSEDGT--LKIWNSSTYKVE  263 (814)
T ss_dssp             S--EEEEEETTTTEEEEEEECC---SSC-----EEEEEECS---SSSEE-EEEETTSC--EEEEETTTCSEE
T ss_pred             C--EEEEEECCCCcEEEEEcCC---CCC-----EEEEEEcC---CCCEE-EEEeCCCe--EEEEECCCCcEE
Confidence            4  5677777777643322110   111     11234553   55544 44444554  566688777643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.60  E-value=2.1e-05  Score=77.93  Aligned_cols=274  Identities=8%  Similarity=-0.025  Sum_probs=146.9

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCC----CcccCCCCCCccccceeeCCeeeEEECC-EEEEEeC
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDE----PSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNY  162 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~----~~~lt~~~~~~r~~v~~ygg~~~~~~~~-~i~F~~~  162 (548)
                      ..+..+.++| |+.++...    .+|...||.....   .    .+.+....    ..+.   ...|++++. .|+.. .
T Consensus        12 ~~v~~~~~s~~~~~l~~~~----~d~~v~iw~~~~~---~~~~~~~~~~~~~----~~v~---~~~~~~~~~~~l~~~-~   76 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITS----WDGSLTVYKFDIQ---AKNVDLLQSLRYK----HPLL---CCNFIDNTDLQIYVG-T   76 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEE----TTSEEEEEEEETT---TTEEEEEEEEECS----SCEE---EEEEEESSSEEEEEE-E
T ss_pred             CcEEEEEEcCCCCEEEEEc----CCCeEEEEEeCCC---CccccceeeeecC----CceE---EEEECCCCCcEEEEE-c
Confidence            4567788998 66665443    2477777766443   2    22222111    1111   136788877 55554 4


Q ss_pred             CCCeEEEEeC-CCCCCCceecCC--CCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCC---------
Q 008927          163 KDQRLYKHSI-DSKDSSPLPITP--DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG---------  230 (548)
Q Consensus       163 ~~~~Ly~~~~-~~~~~~~~~lT~--~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~---------  230 (548)
                      .++.|++.++ .+  ++...+..  .    ...+..+.|+| ++.|+....+         ..|.++|+.+         
T Consensus        77 ~dg~i~~wd~~~~--~~~~~~~~~~~----~~~v~~l~~~~-~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~  140 (342)
T 1yfq_A           77 VQGEILKVDLIGS--PSFQALTNNEA----NLGICRICKYG-DDKLIAASWD---------GLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             TTSCEEEECSSSS--SSEEECBSCCC----CSCEEEEEEET-TTEEEEEETT---------SEEEEECHHHHTTBCEEEE
T ss_pred             CCCeEEEEEeccC--CceEeccccCC----CCceEEEEeCC-CCEEEEEcCC---------CeEEEEccccccccccccc
Confidence            6788999998 76  66666654  3    23456778999 8877665433         3678888876         


Q ss_pred             CCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc
Q 008927          231 QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS  310 (548)
Q Consensus       231 g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp  310 (548)
                      ++   ...............|+|++  |+...        ....|.+.++...+............    ..+....|+|
T Consensus       141 ~~---~~~~~~~~~~v~~~~~~~~~--l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~----~~i~~i~~~~  203 (342)
T 1yfq_A          141 NL---NSNNTKVKNKIFTMDTNSSR--LIVGM--------NNSQVQWFRLPLCEDDNGTIEESGLK----YQIRDVALLP  203 (342)
T ss_dssp             ES---CSSSSSSCCCEEEEEECSSE--EEEEE--------STTEEEEEESSCCTTCCCEEEECSCS----SCEEEEEECS
T ss_pred             CC---eeeEEeeCCceEEEEecCCc--EEEEe--------CCCeEEEEECCccccccceeeecCCC----CceeEEEECC
Confidence            44   22222233446677899988  54333        13579999987413211112222222    4567789999


Q ss_pred             -CCcEEEEEeCCCCeeeEEEEeccC-----CeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEE
Q 008927          311 -KGELFFVTDRKNGFWNLHKWIESN-----NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (548)
Q Consensus       311 -DG~L~~~sd~~~g~~~Ly~~d~~~-----g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~  384 (548)
                       ||+++++... +|.-.||.++..+     .....+....................+.|   +++.|+ +...+|  .|+
T Consensus       204 ~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~-~~~~dg--~i~  276 (342)
T 1yfq_A          204 KEQEGYACSSI-DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP---RHKFLY-TAGSDG--IIS  276 (342)
T ss_dssp             GGGCEEEEEET-TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT---TTCCEE-EEETTS--CEE
T ss_pred             CCCCEEEEEec-CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC---CCCEEE-EecCCc--eEE
Confidence             9996666555 6666666665431     11222211100000000000112345554   555554 444455  467


Q ss_pred             EEECCCCceE-eecCC-CceeEeeeecCCEEEEEE
Q 008927          385 ILDDFGHSLS-LLDIP-FTDIDNITLGNDCLFVEG  417 (548)
Q Consensus       385 ~~dl~~g~~~-~l~~~-~~~~~~~s~d~~~l~~~~  417 (548)
                      ++|+.+++.. .+... ...+..+.++++.|+...
T Consensus       277 vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s  311 (342)
T 1yfq_A          277 CWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT  311 (342)
T ss_dssp             EEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEE
T ss_pred             EEcCccHhHhhhhhcccCCCceEecCCCCeEEEEe
Confidence            7788877643 34333 334544455556554443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.60  E-value=1e-05  Score=77.98  Aligned_cols=200  Identities=13%  Similarity=0.108  Sum_probs=120.4

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +|.++++.|++++...+.|+++++++  +..+.+....   ......+.++|+++.|++. ...       ...|+++++
T Consensus        42 ~~d~~~~~ly~~d~~~~~I~~~~~~g--~~~~~~~~~~---~~~p~~ia~d~~~~~lyv~-d~~-------~~~I~~~~~  108 (267)
T 1npe_A           42 AFDCVDKVVYWTDISEPSIGRASLHG--GEPTTIIRQD---LGSPEGIALDHLGRTIFWT-DSQ-------LDRIEVAKM  108 (267)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEESSS--CCCEEEECTT---CCCEEEEEEETTTTEEEEE-ETT-------TTEEEEEET
T ss_pred             EEecCCCEEEEEECCCCEEEEEecCC--CCcEEEEECC---CCCccEEEEEecCCeEEEE-ECC-------CCEEEEEEc
Confidence            45555779999998888999999987  5555443220   1234467789988887664 321       247999999


Q ss_pred             CCCCccCcEEeeecC-CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          229 NGQNIQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~-~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      ++..   .+.+.... ..-...+++|++.+|+|..+..     ....|++++++  |..  ...+.... -  .....+.
T Consensus       109 ~g~~---~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-----~~~~I~~~~~d--g~~--~~~~~~~~-~--~~P~gia  173 (267)
T 1npe_A          109 DGTQ---RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-----DNPKIETSHMD--GTN--RRILAQDN-L--GLPNGLT  173 (267)
T ss_dssp             TSCS---CEEEECSSCSSEEEEEEETTTTEEEEEECCS-----SSCEEEEEETT--SCC--CEEEECTT-C--SCEEEEE
T ss_pred             CCCC---EEEEEECCCCCccEEEEeeCCCEEEEEECCC-----CCcEEEEEecC--CCC--cEEEEECC-C--CCCcEEE
Confidence            8765   55554322 2334567999988887665321     13579988886  321  22222111 0  2345678


Q ss_pred             ECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (548)
Q Consensus       308 wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d  387 (548)
                      +++|++.+|++|.  +...|++++++++..+.+...   ...|.   +   .+.     +++.||++.  .+...|+++|
T Consensus       174 ~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~~---~~~P~---g---i~~-----d~~~lyva~--~~~~~v~~~d  235 (267)
T 1npe_A          174 FDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEG---LQYPF---A---VTS-----YGKNLYYTD--WKTNSVIAMD  235 (267)
T ss_dssp             EETTTTEEEEEET--TTTEEEEEETTEEEEEEEEEC---CCSEE---E---EEE-----ETTEEEEEE--TTTTEEEEEE
T ss_pred             EcCCCCEEEEEEC--CCCEEEEEecCCCceEEEecC---CCCce---E---EEE-----eCCEEEEEE--CCCCeEEEEe
Confidence            9999885555555  234799999876554444321   11221   1   222     567777643  2334688999


Q ss_pred             CCCCceE
Q 008927          388 DFGHSLS  394 (548)
Q Consensus       388 l~~g~~~  394 (548)
                      .++|+..
T Consensus       236 ~~~g~~~  242 (267)
T 1npe_A          236 LAISKEM  242 (267)
T ss_dssp             TTTTEEE
T ss_pred             CCCCCce
Confidence            8877643

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.59  E-value=1.5e-06  Score=88.37  Aligned_cols=194  Identities=9%  Similarity=-0.052  Sum_probs=114.6

Q ss_pred             eeEEECCEEEEEe-CCCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          149 AFRIFGDTVIFSN-YKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       149 ~~~~~~~~i~F~~-~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      +|+|||..|+... ..++.|.+.++..  ++.. .+...     ..+.++.|||||+.|+... +         ..+.++
T Consensus       140 ~fSpDg~~la~as~~~d~~i~iwd~~~--~~~~~~~~~~-----~~V~~v~fspdg~~l~s~s-~---------~~~~~~  202 (365)
T 4h5i_A          140 YISREGTVAAIASSKVPAIMRIIDPSD--LTEKFEIETR-----GEVKDLHFSTDGKVVAYIT-G---------SSLEVI  202 (365)
T ss_dssp             EECTTSSCEEEEESCSSCEEEEEETTT--TEEEEEEECS-----SCCCEEEECTTSSEEEEEC-S---------SCEEEE
T ss_pred             EEcCCCCEEEEEECCCCCEEEEeECCC--CcEEEEeCCC-----CceEEEEEccCCceEEecc-c---------eeEEEE
Confidence            6888888877654 3467788888876  4433 33221     2466789999999887753 2         236777


Q ss_pred             ECCCCCccCcEE-e-eec-CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCce--eeeEEEcCCCCCccc
Q 008927          227 ALNGQNIQEPKV-L-VSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV--YKRVCVAGFDPTIVE  301 (548)
Q Consensus       227 dl~~g~~~~~~~-L-~~~-~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~--~~~~~l~~~~~~~~~  301 (548)
                      +..+++   ... . ..+ ...+...+|||||+.|+..+.+..    ....++..++.. +..  .....+.+..    .
T Consensus       203 ~~~~~~---~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~----~~~~i~~~~~~~-~~~~~~~~~~~~~~~----~  270 (365)
T 4h5i_A          203 STVTGS---CIARKTDFDKNWSLSKINFIADDTVLIAASLKKG----KGIVLTKISIKS-GNTSVLRSKQVTNRF----K  270 (365)
T ss_dssp             ETTTCC---EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS----CCEEEEEEEEET-TEEEEEEEEEEESSC----S
T ss_pred             EeccCc---ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc----ceeEEeeccccc-ceecceeeeeecCCC----C
Confidence            887775   222 1 122 233567789999999886654322    123566667653 321  1122344433    4


Q ss_pred             CCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEe-ecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCe
Q 008927          302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR  380 (548)
Q Consensus       302 ~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~-l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~  380 (548)
                      .+....|+|||++++.... ++  .|.++|+.+++... +...     ...+   ....+|+|   |++.| ++...++.
T Consensus       271 ~V~~~~~Spdg~~lasgs~-D~--~V~iwd~~~~~~~~~~~~g-----H~~~---V~~v~fSp---dg~~l-aS~S~D~t  335 (365)
T 4h5i_A          271 GITSMDVDMKGELAVLASN-DN--SIALVKLKDLSMSKIFKQA-----HSFA---ITEVTISP---DSTYV-ASVSAANT  335 (365)
T ss_dssp             CEEEEEECTTSCEEEEEET-TS--CEEEEETTTTEEEEEETTS-----SSSC---EEEEEECT---TSCEE-EEEETTSE
T ss_pred             CeEeEEECCCCCceEEEcC-CC--EEEEEECCCCcEEEEecCc-----ccCC---EEEEEECC---CCCEE-EEEeCCCe
Confidence            5777899999995555433 33  47777888877532 3211     1111   12356765   66544 56667777


Q ss_pred             EEEEEE
Q 008927          381 SYLGIL  386 (548)
Q Consensus       381 ~~L~~~  386 (548)
                      -+|+-+
T Consensus       336 vrvw~i  341 (365)
T 4h5i_A          336 IHIIKL  341 (365)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            666644

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.59  E-value=1.3e-05  Score=82.01  Aligned_cols=243  Identities=10%  Similarity=0.057  Sum_probs=134.2

Q ss_pred             EEECCEEEEE--eCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          151 RIFGDTVIFS--NYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       151 ~~~~~~i~F~--~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~Sp-DG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      +.+.+.+++.  ...++.|.+.+++.. +.. +.+.... .....+..+.|+| +++.|+....+         ..|.++
T Consensus        41 ~~~~~~~~~~~~~~~~g~i~v~~~~~~-~~~~~~~~~~~-~h~~~V~~~~~~p~~~~~l~s~s~d---------g~v~vw  109 (402)
T 2aq5_A           41 AVNPKFMALICEASGGGAFLVLPLGKT-GRVDKNVPLVC-GHTAPVLDIAWCPHNDNVIASGSED---------CTVMVW  109 (402)
T ss_dssp             EECSSEEEEEBCCSSSCCEEEEETTCC-EECCTTCCCBC-CCSSCEEEEEECTTCTTEEEEEETT---------SEEEEE
T ss_pred             EECCCeEEEEEEEcCCCEEEEEECccC-CCCCCCCceEe-cCCCCEEEEEeCCCCCCEEEEEeCC---------CeEEEE
Confidence            3445544443  445778888888541 211 1111110 0123466788999 88876665433         367888


Q ss_pred             ECCCCCc-----cCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEE--cCCCCCc
Q 008927          227 ALNGQNI-----QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV--AGFDPTI  299 (548)
Q Consensus       227 dl~~g~~-----~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l--~~~~~~~  299 (548)
                      |+.++..     .....+......+....|+|||+.+++....       ...|.+.|+.. ++  ....+  ....   
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~-------dg~i~iwd~~~-~~--~~~~~~~~~~~---  176 (402)
T 2aq5_A          110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC-------DNVILVWDVGT-GA--AVLTLGPDVHP---  176 (402)
T ss_dssp             ECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET-------TSCEEEEETTT-TE--EEEEECTTTCC---
T ss_pred             EccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC-------CCEEEEEECCC-CC--ccEEEecCCCC---
Confidence            8887631     0134454445557788999999644434422       34688889884 43  23344  3333   


Q ss_pred             ccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeec-ccccccCCCcccccCcceeeeeecCCCCEEEEEEE-e
Q 008927          300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-Q  377 (548)
Q Consensus       300 ~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~-~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~-~  377 (548)
                       ..+....|+|||++++.... +|  .|..+|+.+++..... ....   ..    ......|.+   ++ .++++.. .
T Consensus       177 -~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~---~~----~~~~~~~~~---~~-~~l~~g~~~  241 (402)
T 2aq5_A          177 -DTIYSVDWSRDGALICTSCR-DK--RVRVIEPRKGTVVAEKDRPHE---GT----RPVHAVFVS---EG-KILTTGFSR  241 (402)
T ss_dssp             -SCEEEEEECTTSSCEEEEET-TS--EEEEEETTTTEEEEEEECSSC---SS----SCCEEEECS---TT-EEEEEEECT
T ss_pred             -CceEEEEECCCCCEEEEEec-CC--cEEEEeCCCCceeeeeccCCC---CC----cceEEEEcC---CC-cEEEEeccC
Confidence             46788999999994444444 34  5777888777654332 1110   00    012244553   44 4444432 2


Q ss_pred             CCeEEEEEEECCCCce--EeecCC-CceeEe--eeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          378 NGRSYLGILDDFGHSL--SLLDIP-FTDIDN--ITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       378 ~g~~~L~~~dl~~g~~--~~l~~~-~~~~~~--~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      .....|.++|+.+++.  .....+ ...+..  ++++++.+++.++.   -..|.++|+.+++
T Consensus       242 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~---dg~i~i~d~~~~~  301 (402)
T 2aq5_A          242 MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG---DSSIRYFEITSEA  301 (402)
T ss_dssp             TCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETT---CSCEEEEEECSST
T ss_pred             CCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcC---CCeEEEEEecCCC
Confidence            3456788889877643  222221 122332  36778877666532   2468888887665

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.58  E-value=1e-05  Score=82.41  Aligned_cols=249  Identities=12%  Similarity=0.054  Sum_probs=132.7

Q ss_pred             eeeEEECCEEEEEeC---------CCCeEEEEeCCCCCCCce-ecCCCCCCC---CceecceeeCCCCCEEEEEEeccCC
Q 008927          148 GAFRIFGDTVIFSNY---------KDQRLYKHSIDSKDSSPL-PITPDYGEP---LVSYADGIFDPRFNRYVTVREDRRQ  214 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~---------~~~~Ly~~~~~~~~~~~~-~lT~~~~~~---~~~~~~~~~SpDG~~i~~v~~~~~~  214 (548)
                      -.++|||++||..+.         +++.|.++|..+  .+.. .|.-..+..   ...-..+.+||||++++......  
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t--~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~--  158 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT--LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP--  158 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT--CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS--
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC--CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCC--
Confidence            356778888877752         245799999987  4442 332110000   01233578999999965542221  


Q ss_pred             CCCCceeEEEEEECCCCCccCcEEeeecCCce--------eeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCce
Q 008927          215 DALNSTTEIVAIALNGQNIQEPKVLVSGSDFY--------AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV  286 (548)
Q Consensus       215 ~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~--------~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~  286 (548)
                           .+.|.+||+++++.  ...|. -++..        .....++||+. +|+.....      ..+ + +...    
T Consensus       159 -----~~~VsVID~~t~~v--v~tI~-v~g~~~~~P~g~~~~~~~~~DG~~-~~v~~~~~------g~v-~-~~~~----  217 (386)
T 3sjl_D          159 -----APAVGVVDLEGKAF--KRMLD-VPDCYHIFPTAPDTFFMHCRDGSL-AKVAFGTE------GTP-E-ITHT----  217 (386)
T ss_dssp             -----SCEEEEEETTTTEE--EEEEE-CCSEEEEEEEETTEEEEEETTSCE-EEEECCSS------SCC-E-EEEC----
T ss_pred             -----CCeEEEEECCCCcE--EEEEE-CCCcceeecCCCceeEEECCCCCE-EEEECCCC------CeE-E-Eeec----
Confidence                 25799999999872  22332 11110        11245666663 33432211      111 0 1000    


Q ss_pred             eeeEEEcCCCCCcccCCcCceEC-cCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccc--cc-cCCCcccccC-cceee
Q 008927          287 YKRVCVAGFDPTIVESPTEPKWS-SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD--AE-FSRPLWVFGI-NSYEI  361 (548)
Q Consensus       287 ~~~~~l~~~~~~~~~~~~~~~ws-pDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~--~d-~~~p~w~~~~-~~~~~  361 (548)
                         ..+.... .  .....+.|. +||+++|+++.  |  ++|.+|..++..+.+.+..  .+ .-.+.|..+. ..+..
T Consensus       218 ---~~~~~~~-~--~~~~~~~~~~~dG~~~~vs~~--g--~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~  287 (386)
T 3sjl_D          218 ---EVFHPED-E--FLINHPAYSQKAGRLVWPTYT--G--KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY  287 (386)
T ss_dssp             ---CCCSCTT-S--CBCSCCEEETTTTEEEEEBTT--S--EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE
T ss_pred             ---ceecccc-c--cccccceeEcCCCcEEEEeCC--C--EEEEEECCCCcceeecceeccccccccccccCCCcceeeE
Confidence               0011111 1  122346774 78998888774  3  6999998766543322110  00 0013444432 23444


Q ss_pred             eeecCCCCEEEEEEEeC-------CeEEEEEEECCCCceE-eecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcC
Q 008927          362 IQSHGEKNLIACSYRQN-------GRSYLGILDDFGHSLS-LLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLD  432 (548)
Q Consensus       362 ~~~~~d~~~l~~~~~~~-------g~~~L~~~dl~~g~~~-~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~  432 (548)
                      .+   +++++|.....+       .-.+++++|++++++. .+..+..... .+++|++.++|+.+.  ....|.++|..
T Consensus       288 ~~---~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~--~~~~VsViD~~  362 (386)
T 3sjl_D          288 HR---ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST--GDKTLYIHDAE  362 (386)
T ss_dssp             ET---TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET--TTTEEEEEETT
T ss_pred             CC---CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC--CCCeEEEEECC
Confidence            43   788888876532       2468999999998754 4444321111 237888755555543  34689999998


Q ss_pred             CCce
Q 008927          433 DHKL  436 (548)
Q Consensus       433 ~~~~  436 (548)
                      +++.
T Consensus       363 t~k~  366 (386)
T 3sjl_D          363 SGEE  366 (386)
T ss_dssp             TCCE
T ss_pred             CCcE
Confidence            8874

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.57  E-value=4.7e-05  Score=77.08  Aligned_cols=292  Identities=10%  Similarity=0.058  Sum_probs=151.4

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCC---------CCccccceeeCCeeeEEECCEEE
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKE---------YAVRTTAQEYGGGAFRIFGDTVI  158 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~---------~~~r~~v~~ygg~~~~~~~~~i~  158 (548)
                      ..+..+.++| .+..+.....   +|...||.....  .....+....         ......+.   .-.|+++++.++
T Consensus        44 ~~v~~~~~s~~~~~~l~~~~~---dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~l  115 (408)
T 4a11_B           44 GGINTLDIEPVEGRYMLSGGS---DGVIVLYDLENS--SRQSYYTCKAVCSIGRDHPDVHRYSVE---TVQWYPHDTGMF  115 (408)
T ss_dssp             SCEEEEEECTTTCCEEEEEET---TSCEEEEECCCC--SSSSCEEECEEEEECTTCTTCCSSCEE---EEEECTTCTTCE
T ss_pred             CcEEEEEEecCCCCEEEEEcC---CCeEEEEECCCC--cccceEeccccccccccccccCCCcEE---EEEEccCCCcEE
Confidence            4667788888 6666555443   577778876543  1222221000         00011110   124555344455


Q ss_pred             EEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCC---CCCEEEEEEeccCCCCCCceeEEEEEECCCCCccC
Q 008927          159 FSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP---RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (548)
Q Consensus       159 F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~Sp---DG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~  235 (548)
                      ++...++.|.+.++..  ++........    .......++|   ++..|+....+         ..|.++|+.+++.  
T Consensus       116 ~s~~~d~~i~iwd~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~d~~~~~~--  178 (408)
T 4a11_B          116 TSSSFDKTLKVWDTNT--LQTADVFNFE----ETVYSHHMSPVSTKHCLVAVGTRG---------PKVQLCDLKSGSC--  178 (408)
T ss_dssp             EEEETTSEEEEEETTT--TEEEEEEECS----SCEEEEEECSSCSSCCEEEEEESS---------SSEEEEESSSSCC--
T ss_pred             EEEeCCCeEEEeeCCC--CccceeccCC----CceeeeEeecCCCCCcEEEEEcCC---------CeEEEEeCCCcce--
Confidence            5555678888889876  4443332221    1234455666   44466554332         3588889988762  


Q ss_pred             cEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEE---------------cCCCCCcc
Q 008927          236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV---------------AGFDPTIV  300 (548)
Q Consensus       236 ~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l---------------~~~~~~~~  300 (548)
                      ...+......+....|+|||++++++...       ...|.+.++.....  ....+               ....    
T Consensus       179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~~-------dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----  245 (408)
T 4a11_B          179 SHILQGHRQEILAVSWSPRYDYILATASA-------DSRVKLWDVRRASG--CLITLDQHNGKKSQAVESANTAHN----  245 (408)
T ss_dssp             CEEECCCCSCEEEEEECSSCTTEEEEEET-------TSCEEEEETTCSSC--CSEECCTTTTCSCCCTTTSSCSCS----
T ss_pred             eeeecCCCCcEEEEEECCCCCcEEEEEcC-------CCcEEEEECCCCCc--ccccccccccccceeecccccccc----
Confidence            34454445556778999999975544422       34688888864321  11222               1111    


Q ss_pred             cCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeeccccc-ccCCCcccccCcceeeeeecCCCCEEEEEEEeCC
Q 008927          301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA-EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (548)
Q Consensus       301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~-d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g  379 (548)
                      ..+..+.|+|||++++.... +|  .|..+++.+++......... ......     ..+....  ..+..+++. ..++
T Consensus       246 ~~v~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~-~~~~  314 (408)
T 4a11_B          246 GKVNGLCFTSDGLHLLTVGT-DN--RMRLWNSSNGENTLVNYGKVCNNSKKG-----LKFTVSC--GCSSEFVFV-PYGS  314 (408)
T ss_dssp             SCEEEEEECTTSSEEEEEET-TS--CEEEEETTTCCBCCCCCCCCCCCCSSC-----CCCEECC--SSSSCEEEE-EETT
T ss_pred             CceeEEEEcCCCCEEEEecC-CC--eEEEEECCCCccceecccccccccccc-----ceeEEec--CCCceEEEE-ecCC
Confidence            34667899999995555443 34  46777777766432221100 000000     0011110  023444444 3344


Q ss_pred             eEEEEEEECCCCceE-eecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          380 RSYLGILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       380 ~~~L~~~dl~~g~~~-~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                        .|.++|+.+++.. .+......+..+  +++++.|+ +++.   -..|.++|++.++
T Consensus       315 --~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~---dg~i~iw~~~~~~  367 (408)
T 4a11_B          315 --TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY-SGSR---DCNILAWVPSLYE  367 (408)
T ss_dssp             --EEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEE-EEET---TSCEEEEEECC--
T ss_pred             --EEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEE-EECC---CCeEEEEeCCCCC
Confidence              5777888887654 343333345544  66776654 3332   2568888887665

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.57  E-value=2.3e-05  Score=79.42  Aligned_cols=103  Identities=7%  Similarity=0.046  Sum_probs=60.0

Q ss_pred             CCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCC-CCCCceeEEEEEECCCCCccCcEEeee
Q 008927          164 DQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-DALNSTTEIVAIALNGQNIQEPKVLVS  241 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~-~~~~~~~~l~~idl~~g~~~~~~~L~~  241 (548)
                      ++.||++|.+.  ++.. .+..+     ..- .+.+||||++++...+.... ..++....|.++|+.+++.  ...+.-
T Consensus        30 d~~v~v~D~~t--~~~~~~i~~g-----~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~--~~~i~~   99 (361)
T 2oiz_A           30 ESRVHVYDYTN--GKFLGMVPTA-----FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF--EKEISL   99 (361)
T ss_dssp             GCEEEEEETTT--CCEEEEEECC-----EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE--EEEEEE
T ss_pred             cCeEEEEECCC--CeEEEEecCC-----CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE--EEEEEc
Confidence            46899999876  5443 33222     223 67899999987665432100 0011235799999988762  233322


Q ss_pred             cC------CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC
Q 008927          242 GS------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE  282 (548)
Q Consensus       242 ~~------~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~  282 (548)
                      ..      ..-....+||||++|+ ++...+     ...|.++|++.
T Consensus       100 ~~~~~~~g~~p~~i~~spdg~~l~-v~n~~~-----~~~v~v~d~~~  140 (361)
T 2oiz_A          100 PPKRVQGLNYDGLFRQTTDGKFIV-LQNASP-----ATSIGIVDVAK  140 (361)
T ss_dssp             CTTBCCBCCCGGGEEECTTSSEEE-EEEESS-----SEEEEEEETTT
T ss_pred             CccccccCCCcceEEECCCCCEEE-EECCCC-----CCeEEEEECCC
Confidence            21      1233568999999876 542211     34688888774

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.56  E-value=1e-05  Score=82.55  Aligned_cols=241  Identities=12%  Similarity=0.079  Sum_probs=132.6

Q ss_pred             ccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEE
Q 008927           90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY  168 (548)
Q Consensus        90 ~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly  168 (548)
                      .+..+.++| |+.++...    .+|...||.  ..+ .....+......+.       ...|++++..|+... .++.|.
T Consensus       110 ~v~~~~~s~~~~~l~~~~----~dg~i~i~~--~~~-~~~~~~~~~~~~v~-------~~~~~~~~~~l~~~~-~d~~i~  174 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGV----ENGELRLWN--KTG-ALLNVLNFHRAPIV-------SVKWNKDGTHIISMD-VENVTI  174 (425)
T ss_dssp             CEEEEEECTTSSEEEEEE----TTSCEEEEE--TTS-CEEEEECCCCSCEE-------EEEECTTSSEEEEEE-TTCCEE
T ss_pred             ceEEEEEcCCCCEEEEEe----CCCeEEEEe--CCC-CeeeeccCCCccEE-------EEEECCCCCEEEEEe-cCCeEE
Confidence            677889999 66555443    247777775  221 22333332211111       125666676666554 567788


Q ss_pred             EEeCCCCCCCc-eecCCCCCC-----------CCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCc
Q 008927          169 KHSIDSKDSSP-LPITPDYGE-----------PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (548)
Q Consensus       169 ~~~~~~~~~~~-~~lT~~~~~-----------~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~  236 (548)
                      +.++..  ++. ..+......           .......+.|+|++. ++....+         ..|+++|+.+++.  .
T Consensus       175 iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------g~i~~~d~~~~~~--~  240 (425)
T 1r5m_A          175 LWNVIS--GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPK---------GAIFVYQITEKTP--T  240 (425)
T ss_dssp             EEETTT--TEEEEEECCC---------------CCCBSCCEEEETTE-EEEECGG---------GCEEEEETTCSSC--S
T ss_pred             EEECCC--CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCC---------CeEEEEEcCCCce--e
Confidence            888865  333 223222100           000155677888865 3333222         4689999998762  3


Q ss_pred             EEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEE
Q 008927          237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF  316 (548)
Q Consensus       237 ~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~  316 (548)
                      ..+......+....|+|||+.|+....        ...|++.++.. ++  ....+....    ..+..+.|+||| +++
T Consensus       241 ~~~~~~~~~i~~~~~~~~~~~l~~~~~--------d~~i~i~d~~~-~~--~~~~~~~~~----~~i~~~~~~~~~-~l~  304 (425)
T 1r5m_A          241 GKLIGHHGPISVLEFNDTNKLLLSASD--------DGTLRIWHGGN-GN--SQNCFYGHS----QSIVSASWVGDD-KVI  304 (425)
T ss_dssp             EEECCCSSCEEEEEEETTTTEEEEEET--------TSCEEEECSSS-BS--CSEEECCCS----SCEEEEEEETTT-EEE
T ss_pred             eeeccCCCceEEEEECCCCCEEEEEcC--------CCEEEEEECCC-Cc--cceEecCCC----ccEEEEEECCCC-EEE
Confidence            344433445677899999998875441        34688888874 43  233444333    457788999999 555


Q ss_pred             EEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCc
Q 008927          317 VTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS  392 (548)
Q Consensus       317 ~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~  392 (548)
                      .... +|  .|+.+|+.+++........   ..+     .....+.|   +++.| ++...++.  |.++|+.+++
T Consensus       305 ~~~~-d~--~i~i~d~~~~~~~~~~~~~---~~~-----i~~~~~s~---~~~~l-~~~~~dg~--i~i~~~~~~~  363 (425)
T 1r5m_A          305 SCSM-DG--SVRLWSLKQNTLLALSIVD---GVP-----IFAGRISQ---DGQKY-AVAFMDGQ--VNVYDLKKLN  363 (425)
T ss_dssp             EEET-TS--EEEEEETTTTEEEEEEECT---TCC-----EEEEEECT---TSSEE-EEEETTSC--EEEEECHHHH
T ss_pred             EEeC-CC--cEEEEECCCCcEeEecccC---Ccc-----EEEEEEcC---CCCEE-EEEECCCe--EEEEECCCCc
Confidence            5444 44  5777787777654333210   111     11234553   55544 44555554  5556665554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.56  E-value=2.1e-05  Score=78.47  Aligned_cols=235  Identities=11%  Similarity=-0.035  Sum_probs=136.5

Q ss_pred             eEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      ..+++++|+.....++.|.++|+.+  ++. +.+...     .....+.+++|| +| |+....       ...|+++|+
T Consensus        49 i~~~~~~lyv~~~~~~~v~viD~~t--~~~~~~i~~~-----~~p~~i~~~~~g-~l-yv~~~~-------~~~v~~iD~  112 (328)
T 3dsm_A           49 MVIRDGIGWIVVNNSHVIFAIDINT--FKEVGRITGF-----TSPRYIHFLSDE-KA-YVTQIW-------DYRIFIINP  112 (328)
T ss_dssp             EEEETTEEEEEEGGGTEEEEEETTT--CCEEEEEECC-----SSEEEEEEEETT-EE-EEEEBS-------CSEEEEEET
T ss_pred             EEEECCEEEEEEcCCCEEEEEECcc--cEEEEEcCCC-----CCCcEEEEeCCC-eE-EEEECC-------CCeEEEEEC
Confidence            4567888888887778999999987  554 455432     123355688888 54 544321       247999999


Q ss_pred             CCCCccCcE-EeeecCC-----ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccC
Q 008927          229 NGQNIQEPK-VLVSGSD-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES  302 (548)
Q Consensus       229 ~~g~~~~~~-~L~~~~~-----~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~  302 (548)
                      ++++   .. .+..+..     .-....+  ++++|. +....     ....|+++|+++ +++.  ..+...     ..
T Consensus       113 ~t~~---~~~~i~~g~~~~~~~~p~~i~~--~~~~ly-v~~~~-----~~~~v~viD~~t-~~~~--~~i~~g-----~~  173 (328)
T 3dsm_A          113 KTYE---ITGYIECPDMDMESGSTEQMVQ--YGKYVY-VNCWS-----YQNRILKIDTET-DKVV--DELTIG-----IQ  173 (328)
T ss_dssp             TTTE---EEEEEECTTCCTTTCBCCCEEE--ETTEEE-EEECT-----TCCEEEEEETTT-TEEE--EEEECS-----SC
T ss_pred             CCCe---EEEEEEcCCccccCCCcceEEE--ECCEEE-EEcCC-----CCCEEEEEECCC-CeEE--EEEEcC-----CC
Confidence            9987   43 3332220     2223345  567664 54110     145799999884 5432  223221     23


Q ss_pred             CcCceECcCCcEEEEEeCCC-C------eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEE
Q 008927          303 PTEPKWSSKGELFFVTDRKN-G------FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY  375 (548)
Q Consensus       303 ~~~~~wspDG~L~~~sd~~~-g------~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~  375 (548)
                      .....++|||++|+.+.... +      ...|+++|++++++........ -..|      ..+.+.|   +++.||+..
T Consensus       174 p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p------~~la~~~---d~~~lyv~~  243 (328)
T 3dsm_A          174 PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWP------SEVQLNG---TRDTLYWIN  243 (328)
T ss_dssp             BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCC------EEEEECT---TSCEEEEES
T ss_pred             ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCc------eeEEEec---CCCEEEEEc
Confidence            45678899999777654310 0      2579999998887653321100 0011      2245553   677776542


Q ss_pred             EeCCeEEEEEEECCCCceEeec-CC--CceeEee--eecCCEEEEEEe-cCCCCCeEEEEEcCCCc
Q 008927          376 RQNGRSYLGILDDFGHSLSLLD-IP--FTDIDNI--TLGNDCLFVEGA-SGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       376 ~~~g~~~L~~~dl~~g~~~~l~-~~--~~~~~~~--s~d~~~l~~~~s-s~~~p~~l~~~d~~~~~  435 (548)
                         .  .++++|++++++.... .+  .....++  +++++.+|+... +......|+++|++ ++
T Consensus       244 ---~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          244 ---N--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             ---S--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred             ---c--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence               2  7899999888753211 11  1223344  456777776641 11235789999987 54

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.56  E-value=6.4e-06  Score=83.60  Aligned_cols=201  Identities=11%  Similarity=0.014  Sum_probs=110.9

Q ss_pred             ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCce
Q 008927          195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE  274 (548)
Q Consensus       195 ~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~  274 (548)
                      ..+|||||+.|+......       ...|.++|+.+++   ..........+....|||||++|+...         ...
T Consensus       138 ~v~fSpDg~~la~as~~~-------d~~i~iwd~~~~~---~~~~~~~~~~V~~v~fspdg~~l~s~s---------~~~  198 (365)
T 4h5i_A          138 LVYISREGTVAAIASSKV-------PAIMRIIDPSDLT---EKFEIETRGEVKDLHFSTDGKVVAYIT---------GSS  198 (365)
T ss_dssp             EEEECTTSSCEEEEESCS-------SCEEEEEETTTTE---EEEEEECSSCCCEEEECTTSSEEEEEC---------SSC
T ss_pred             EEEEcCCCCEEEEEECCC-------CCEEEEeECCCCc---EEEEeCCCCceEEEEEccCCceEEecc---------cee
Confidence            467999999876643322       1468889999987   444334444566789999999998654         123


Q ss_pred             EEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCccc
Q 008927          275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWV  353 (548)
Q Consensus       275 L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~  353 (548)
                      +.+.+... +... ........ .  ..+....|+|||+ ++..+..+.....++.++...+....+.... -.+...  
T Consensus       199 ~~~~~~~~-~~~~-~~~~~~~~-~--~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~--  270 (365)
T 4h5i_A          199 LEVISTVT-GSCI-ARKTDFDK-N--WSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ-VTNRFK--  270 (365)
T ss_dssp             EEEEETTT-CCEE-EEECCCCT-T--EEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEE-EESSCS--
T ss_pred             EEEEEecc-Ccce-eeeecCCC-C--CCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeee-ecCCCC--
Confidence            56666653 4311 11111111 1  4567789999999 5555443233445667776555432211000 000111  


Q ss_pred             ccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eec-CCCceeEee--eecCCEEEEEEecCCCCCeEEEE
Q 008927          354 FGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLD-IPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKV  429 (548)
Q Consensus       354 ~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~-~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~  429 (548)
                       ....+.++|   +++.| ++...++.  |.++|+++++.. .+. .....+..+  ++|++.|+ .++..   ..|.++
T Consensus       271 -~V~~~~~Sp---dg~~l-asgs~D~~--V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~la-S~S~D---~tvrvw  339 (365)
T 4h5i_A          271 -GITSMDVDM---KGELA-VLASNDNS--IALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVA-SVSAA---NTIHII  339 (365)
T ss_dssp             -CEEEEEECT---TSCEE-EEEETTSC--EEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEE-EEETT---SEEEEE
T ss_pred             -CeEeEEECC---CCCce-EEEcCCCE--EEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEE-EEeCC---CeEEEE
Confidence             112355664   66555 45555554  666788888643 332 223345554  77877654 44432   456667


Q ss_pred             EcCC
Q 008927          430 TLDD  433 (548)
Q Consensus       430 d~~~  433 (548)
                      |+..
T Consensus       340 ~ip~  343 (365)
T 4h5i_A          340 KLPL  343 (365)
T ss_dssp             ECCT
T ss_pred             EcCC
Confidence            7643

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.55  E-value=0.00017  Score=73.41  Aligned_cols=229  Identities=8%  Similarity=-0.036  Sum_probs=117.9

Q ss_pred             eEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCC-CCCCceeEEEEEECCCCCccCcEEeeec-
Q 008927          166 RLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-DALNSTTEIVAIALNGQNIQEPKVLVSG-  242 (548)
Q Consensus       166 ~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~-~~~~~~~~l~~idl~~g~~~~~~~L~~~-  242 (548)
                      .|+++|++.  ++.. .|..+     .. ..+.+||||++|++..+.... ..++..+.|.++|+.+.+.  ...+.-+ 
T Consensus        48 ~v~v~D~~t--~~~~~~i~~g-----~~-p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~--~~~i~~~~  117 (373)
T 2mad_H           48 QQWVLDAGS--GSILGHVNGG-----FL-PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP--IADIELPD  117 (373)
T ss_pred             EEEEEECCC--CeEEEEecCC-----CC-CCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE--EEEEECCC
Confidence            789999876  4433 33332     12 278899999997665321100 0001125688999988762  2222211 


Q ss_pred             -C-----CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEE-EcCCCCCcccCCcCceECcCCc-E
Q 008927          243 -S-----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-VAGFDPTIVESPTEPKWSSKGE-L  314 (548)
Q Consensus       243 -~-----~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~-l~~~~~~~~~~~~~~~wspDG~-L  314 (548)
                       .     ..-....|||||++|+..... +     ...|.++| + .+++  ... +.- .    .+   ....|+|+ .
T Consensus       118 ~~~~~~g~~p~~~~~spDG~~l~v~n~~-~-----~~~v~viD-~-t~~~--~~~~i~~-~----~~---~~~~~~~~~~  179 (373)
T 2mad_H          118 APRFDVGPYSWMNANTPNNADLLFFQFA-A-----GPAVGLVV-Q-GGSS--DDQLLSS-P----TC---YHIHPGAPST  179 (373)
T ss_pred             ccccccCCCccceEECCCCCEEEEEecC-C-----CCeEEEEE-C-CCCE--EeEEcCC-C----ce---EEEEeCCCce
Confidence             0     122356899999998754321 1     35799999 7 4553  222 221 1    11   34557776 5


Q ss_pred             EEEEeCCCCeeeEEEEeccCCeeEeecccccc-c-CCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCc
Q 008927          315 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAE-F-SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS  392 (548)
Q Consensus       315 ~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d-~-~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~  392 (548)
                      |+.... +|  .+..++. +++.......... . ..|.+.  .  ..+.+   +++.+++... .  ..++++|+.++.
T Consensus       180 ~~~~~~-dg--~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~--~--~~~~~---~~~~~~~~~~-~--~~v~vid~~~~~  245 (373)
T 2mad_H          180 FYLLCA-QG--GLAKTDH-AGGAAGAGLVGAMLTAAQNLLT--Q--PAQAN---KSGRIVWPVY-S--GKILQADISAAG  245 (373)
T ss_pred             EEEEcC-CC--CEEEEEC-CCcEEEEEeccccccCCcceee--c--ceeEe---cCCEEEEEcC-C--ceEEEEeccCCc
Confidence            444332 33  3556666 5554322110000 0 011100  0  11222   5566666552 2  378899987664


Q ss_pred             eEeec---C-----------CCce-eEeeeecCCEEEEEEecCC------CCCeEEEEEcCCCce
Q 008927          393 LSLLD---I-----------PFTD-IDNITLGNDCLFVEGASGV------EPSSVAKVTLDDHKL  436 (548)
Q Consensus       393 ~~~l~---~-----------~~~~-~~~~s~d~~~l~~~~ss~~------~p~~l~~~d~~~~~~  436 (548)
                      .+.+.   .           +.+. .-.+++|++++|+......      ...+|+++|+++++.
T Consensus       246 ~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v  310 (373)
T 2mad_H          246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT  310 (373)
T ss_pred             ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE
Confidence            33221   0           1110 1224678888887664311      235899999987764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.55  E-value=3.5e-06  Score=86.16  Aligned_cols=251  Identities=10%  Similarity=0.031  Sum_probs=135.4

Q ss_pred             eeEEECCEEEEEe----------CCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCC
Q 008927          149 AFRIFGDTVIFSN----------YKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDAL  217 (548)
Q Consensus       149 ~~~~~~~~i~F~~----------~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~  217 (548)
                      +|+|++..++++.          ..++.|++.++..  ++. +.+....  ....+..+.|+|||+.|+....+      
T Consensus        19 ~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~--~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d------   88 (416)
T 2pm9_A           19 AWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLA--ADSEKPIASLQ--VDSKFNDLDWSHNNKIIAGALDN------   88 (416)
T ss_dssp             CBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSS--GGGCSCSCCCC--CSSCEEEEEECSSSSCEEEEESS------
T ss_pred             eeCCCCCCEEEEEecCcccccccCCCCeEEEEEccC--CCCCcEEEEEe--cCCceEEEEECCCCCeEEEEccC------
Confidence            5777777566665          4567788888875  321 1221111  12346678899999988775443      


Q ss_pred             CceeEEEEEECCCCCc--cCcEEeeecCCceeeeEECCC-CCEEEEEEecCCCCCCCCceEEEEEecCCC------ceee
Q 008927          218 NSTTEIVAIALNGQNI--QEPKVLVSGSDFYAFPRMDPR-GERMAWIEWHHPNMPWDKAELWVGYISENG------DVYK  288 (548)
Q Consensus       218 ~~~~~l~~idl~~g~~--~~~~~L~~~~~~~~~p~~SPD-Gk~La~~~~~~~~~p~~~~~L~v~~~~~~g------~~~~  288 (548)
                         ..|.++|+.+...  .....+......+....|+|| ++.|+ ....       ...|++.++....      ....
T Consensus        89 ---g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~-------dg~v~iwd~~~~~~~~~~~~~~~  157 (416)
T 2pm9_A           89 ---GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLA-SGGN-------NGEIFIWDMNKCTESPSNYTPLT  157 (416)
T ss_dssp             ---SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEE-EECS-------SSCEEBCBTTTTSSCTTTCCCBC
T ss_pred             ---CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEE-EEcC-------CCeEEEEECCCCccccccccccc
Confidence               2477778876210  003334434445677899999 66665 4311       3468888887432      1000


Q ss_pred             eEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeeccccccc-CCCcccccCcceeeeeecC
Q 008927          289 RVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF-SRPLWVFGINSYEIIQSHG  366 (548)
Q Consensus       289 ~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~-~~p~w~~~~~~~~~~~~~~  366 (548)
                      ........    ..+..+.|+||+. +++.... +|  .|..+|+.+++........... +..   .......|.|   
T Consensus       158 ~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~---  224 (416)
T 2pm9_A          158 PGQSMSSV----DEVISLAWNQSLAHVFASAGS-SN--FASIWDLKAKKEVIHLSYTSPNSGIK---QQLSVVEWHP---  224 (416)
T ss_dssp             CCCSCCSS----CCCCEEEECSSCTTEEEEESS-SS--CEEEEETTTTEEEEEECCCCCSSCCC---CCEEEEEECS---
T ss_pred             cccccCCC----CCeeEEEeCCCCCcEEEEEcC-CC--CEEEEECCCCCcceEEeccccccccC---CceEEEEECC---
Confidence            00011111    4577899999954 7666554 44  4777787777654333211000 000   0112345654   


Q ss_pred             CCCEEEEEEEeCC-eEEEEEEECCCCc--eEeec-CCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          367 EKNLIACSYRQNG-RSYLGILDDFGHS--LSLLD-IPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       367 d~~~l~~~~~~~g-~~~L~~~dl~~g~--~~~l~-~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      ++..++++...++ ...|+++|+.++.  ...+. .....+..+  +++++.++++++.   ...|.++|+.+++.
T Consensus       225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~---dg~v~~wd~~~~~~  297 (416)
T 2pm9_A          225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR---DNTVLLWNPESAEQ  297 (416)
T ss_dssp             SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES---SSEEEEECSSSCCE
T ss_pred             CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC---CCCEEEeeCCCCcc
Confidence            5555555555543 2257777887753  22333 222334444  5523444444443   35788899877653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.55  E-value=3.6e-05  Score=83.75  Aligned_cols=202  Identities=8%  Similarity=-0.043  Sum_probs=113.8

Q ss_pred             cCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEEE
Q 008927           91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK  169 (548)
Q Consensus        91 ~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~  169 (548)
                      ...+.++| |+.+++-.     .+...||.....  ...+.+....-.+.       .-+|+|+|..|+=.+ .++.|.+
T Consensus        21 ~~~~~~spdg~~l~~~~-----~~~v~l~~~~~~--~~~~~~~~h~~~v~-------~~~~spdg~~lasg~-~d~~v~l   85 (611)
T 1nr0_A           21 AVVLGNTPAGDKIQYCN-----GTSVYTVPVGSL--TDTEIYTEHSHQTT-------VAKTSPSGYYCASGD-VHGNVRI   85 (611)
T ss_dssp             CCCCEECTTSSEEEEEE-----TTEEEEEETTCS--SCCEEECCCSSCEE-------EEEECTTSSEEEEEE-TTSEEEE
T ss_pred             eeEEeeCCCCCEEEeCC-----CCEEEEecCCCc--ccCeEecCCCCceE-------EEEECCCCcEEEEEe-CCCCEEE
Confidence            34567899 88888753     234455655322  23344443221221       126778887766544 4666666


Q ss_pred             EeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceee
Q 008927          170 HSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAF  248 (548)
Q Consensus       170 ~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~  248 (548)
                      -++..+.... ..+...    ...+..+.|||||+.|+...++..     ....|+.+|.  ++.  ...+....+.+..
T Consensus        86 Wd~~~~~~~~~~~~~~~----~~~v~~v~fs~dg~~l~~~~~~~~-----~~~~v~~wd~--~~~--~~~l~gh~~~v~~  152 (611)
T 1nr0_A           86 WDTTQTTHILKTTIPVF----SGPVKDISWDSESKRIAAVGEGRE-----RFGHVFLFDT--GTS--NGNLTGQARAMNS  152 (611)
T ss_dssp             EESSSTTCCEEEEEECS----SSCEEEEEECTTSCEEEEEECCSS-----CSEEEEETTT--CCB--CBCCCCCSSCEEE
T ss_pred             eECCCCcceeeEeeccc----CCceEEEEECCCCCEEEEEECCCC-----ceeEEEEeeC--CCC--cceecCCCCCceE
Confidence            6765310111 122222    234667889999999887754321     1246777774  331  3344444455777


Q ss_pred             eEECCCCCE-EEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeE
Q 008927          249 PRMDPRGER-MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL  327 (548)
Q Consensus       249 p~~SPDGk~-La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~L  327 (548)
                      ..|+||++. |+-.+ .       ...+.+.+... ++  ....+.+..    ..+....|+|||++++.... ++  .|
T Consensus       153 v~f~p~~~~~l~s~s-~-------D~~v~lwd~~~-~~--~~~~l~~H~----~~V~~v~fspdg~~las~s~-D~--~i  214 (611)
T 1nr0_A          153 VDFKPSRPFRIISGS-D-------DNTVAIFEGPP-FK--FKSTFGEHT----KFVHSVRYNPDGSLFASTGG-DG--TI  214 (611)
T ss_dssp             EEECSSSSCEEEEEE-T-------TSCEEEEETTT-BE--EEEEECCCS----SCEEEEEECTTSSEEEEEET-TS--CE
T ss_pred             EEECCCCCeEEEEEe-C-------CCeEEEEECCC-Ce--Eeeeecccc----CceEEEEECCCCCEEEEEEC-CC--cE
Confidence            899999984 55333 1       23577777653 43  233444433    46788999999996555444 44  45


Q ss_pred             EEEeccCCeeE
Q 008927          328 HKWIESNNEVL  338 (548)
Q Consensus       328 y~~d~~~g~~~  338 (548)
                      .++++.+++..
T Consensus       215 ~lwd~~~g~~~  225 (611)
T 1nr0_A          215 VLYNGVDGTKT  225 (611)
T ss_dssp             EEEETTTCCEE
T ss_pred             EEEECCCCcEe
Confidence            56676666543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.51  E-value=2.2e-05  Score=85.41  Aligned_cols=237  Identities=8%  Similarity=0.024  Sum_probs=133.3

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +|+|+|+.|++..  ++.+++.++..+ ...+.++..    ...+....|||||+.|+....+         ..|.++|+
T Consensus        25 ~~spdg~~l~~~~--~~~v~l~~~~~~-~~~~~~~~h----~~~v~~~~~spdg~~lasg~~d---------~~v~lWd~   88 (611)
T 1nr0_A           25 GNTPAGDKIQYCN--GTSVYTVPVGSL-TDTEIYTEH----SHQTTVAKTSPSGYYCASGDVH---------GNVRIWDT   88 (611)
T ss_dssp             EECTTSSEEEEEE--TTEEEEEETTCS-SCCEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEEEES
T ss_pred             eeCCCCCEEEeCC--CCEEEEecCCCc-ccCeEecCC----CCceEEEEECCCCcEEEEEeCC---------CCEEEeEC
Confidence            5788899999987  346777777641 344555543    2245667899999988765433         35777888


Q ss_pred             CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      .+++......+....+.+....|||||++|+-...+..    ....+++.+.   ++  ....+.+..    ..+....|
T Consensus        89 ~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~----~~~~v~~wd~---~~--~~~~l~gh~----~~v~~v~f  155 (611)
T 1nr0_A           89 TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE----RFGHVFLFDT---GT--SNGNLTGQA----RAMNSVDF  155 (611)
T ss_dssp             SSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS----CSEEEEETTT---CC--BCBCCCCCS----SCEEEEEE
T ss_pred             CCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC----ceeEEEEeeC---CC--CcceecCCC----CCceEEEE
Confidence            76541001122223345677899999999986552211    0134555542   32  122234433    46778899


Q ss_pred             CcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927          309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (548)
Q Consensus       309 spDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d  387 (548)
                      +||+. +++.... ++.  +..++..+++.......     ...++   ....|.|   +++. +++...++.  |.+.|
T Consensus       156 ~p~~~~~l~s~s~-D~~--v~lwd~~~~~~~~~l~~-----H~~~V---~~v~fsp---dg~~-las~s~D~~--i~lwd  218 (611)
T 1nr0_A          156 KPSRPFRIISGSD-DNT--VAIFEGPPFKFKSTFGE-----HTKFV---HSVRYNP---DGSL-FASTGGDGT--IVLYN  218 (611)
T ss_dssp             CSSSSCEEEEEET-TSC--EEEEETTTBEEEEEECC-----CSSCE---EEEEECT---TSSE-EEEEETTSC--EEEEE
T ss_pred             CCCCCeEEEEEeC-CCe--EEEEECCCCeEeeeecc-----ccCce---EEEEECC---CCCE-EEEEECCCc--EEEEE
Confidence            99998 5555444 454  44456656554332211     11122   2245654   5554 445555665  55567


Q ss_pred             CCCCceE-eecC------C-CceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          388 DFGHSLS-LLDI------P-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       388 l~~g~~~-~l~~------~-~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      +.+++.. .+..      . ...+..+  +++++.|+ .++.   -..|.++|+.+++
T Consensus       219 ~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~-s~s~---D~~v~lWd~~~~~  272 (611)
T 1nr0_A          219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA-SASA---DKTIKIWNVATLK  272 (611)
T ss_dssp             TTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE-EEET---TSEEEEEETTTTE
T ss_pred             CCCCcEeeeeccccccccccCCCEEEEEECCCCCEEE-EEeC---CCeEEEEeCCCCc
Confidence            7777543 3321      1 2234444  67777654 3332   2567788887664

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.50  E-value=0.00012  Score=73.22  Aligned_cols=200  Identities=12%  Similarity=0.009  Sum_probs=109.4

Q ss_pred             ccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCC--cccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCe
Q 008927           90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEP--SDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR  166 (548)
Q Consensus        90 ~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~--~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~  166 (548)
                      .+..+.++| |+.++--.    .++...||.....   ..  +.....+  -...+.   .-+|+|++..|+-.. .++.
T Consensus        18 ~v~~l~~sp~g~~las~~----~D~~i~iw~~~~~---~~~~~~~~~~~--h~~~v~---~~~~sp~g~~l~s~s-~D~~   84 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCG----GDRRIRIWGTEGD---SWICKSVLSEG--HQRTVR---KVAWSPCGNYLASAS-FDAT   84 (345)
T ss_dssp             CEEEEEECTTSSCEEEEE----TTSCEEEEEEETT---EEEEEEEECSS--CSSCEE---EEEECTTSSEEEEEE-TTSC
T ss_pred             cEEEEEECCCCCEEEEEc----CCCeEEEEEcCCC---cceeeeeeccc--cCCcEE---EEEECCCCCEEEEEE-CCCc
Confidence            345678888 77665443    2577777765332   11  1111110  001111   135777777666554 4454


Q ss_pred             EEEEeCCCCCCCce---ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccC-cEEeeec
Q 008927          167 LYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE-PKVLVSG  242 (548)
Q Consensus       167 Ly~~~~~~~~~~~~---~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~-~~~L~~~  242 (548)
                      +.+.++..  +..+   .+...    ...+..+.|+|||+.|+....+         ..|.++|+.++.... ...+...
T Consensus        85 v~iw~~~~--~~~~~~~~~~~h----~~~v~~v~~sp~~~~l~s~s~D---------~~v~iwd~~~~~~~~~~~~~~~h  149 (345)
T 3fm0_A           85 TCIWKKNQ--DDFECVTTLEGH----ENEVKSVAWAPSGNLLATCSRD---------KSVWVWEVDEEDEYECVSVLNSH  149 (345)
T ss_dssp             EEEEEECC--C-EEEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SCEEEEEECTTSCEEEEEEECCC
T ss_pred             EEEEEccC--CCeEEEEEccCC----CCCceEEEEeCCCCEEEEEECC---------CeEEEEECCCCCCeEEEEEecCc
Confidence            44444443  3322   23322    2346678899999988775443         247777877664100 1122233


Q ss_pred             CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCC
Q 008927          243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN  322 (548)
Q Consensus       243 ~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~  322 (548)
                      ...+....|+|||+.|+-...        ...|.+.++.. +.......+.+..    ..+..+.|+|||++++.... +
T Consensus       150 ~~~v~~~~~~p~~~~l~s~s~--------d~~i~~w~~~~-~~~~~~~~~~~h~----~~v~~l~~sp~g~~l~s~s~-D  215 (345)
T 3fm0_A          150 TQDVKHVVWHPSQELLASASY--------DDTVKLYREEE-DDWVCCATLEGHE----STVWSLAFDPSGQRLASCSD-D  215 (345)
T ss_dssp             CSCEEEEEECSSSSCEEEEET--------TSCEEEEEEET-TEEEEEEEECCCS----SCEEEEEECTTSSEEEEEET-T
T ss_pred             CCCeEEEEECCCCCEEEEEeC--------CCcEEEEEecC-CCEEEEEEecCCC----CceEEEEECCCCCEEEEEeC-C
Confidence            344667889999998875542        23577777763 4321223344433    46788999999995555544 5


Q ss_pred             CeeeEEEEe
Q 008927          323 GFWNLHKWI  331 (548)
Q Consensus       323 g~~~Ly~~d  331 (548)
                      +.-.||...
T Consensus       216 ~~v~iW~~~  224 (345)
T 3fm0_A          216 RTVRIWRQY  224 (345)
T ss_dssp             SCEEEEEEE
T ss_pred             CeEEEeccc
Confidence            666666543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.50  E-value=0.00012  Score=74.13  Aligned_cols=205  Identities=14%  Similarity=0.035  Sum_probs=111.3

Q ss_pred             eeEEE----C---CEEEEEeCCCCeEEEEeCCCCCCC------ceecCCCCCCC--CceecceeeC----CCCCE-EEEE
Q 008927          149 AFRIF----G---DTVIFSNYKDQRLYKHSIDSKDSS------PLPITPDYGEP--LVSYADGIFD----PRFNR-YVTV  208 (548)
Q Consensus       149 ~~~~~----~---~~i~F~~~~~~~Ly~~~~~~~~~~------~~~lT~~~~~~--~~~~~~~~~S----pDG~~-i~~v  208 (548)
                      .|+++    +   ..|+. ...++.|++.++..  ++      .+.+..... .  ...+..+.|+    |+++. |+..
T Consensus        69 ~~~~~~~~~g~~~~~l~s-~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~  144 (397)
T 1sq9_A           69 DVLQAIERDAFELCLVAT-TSFSGDLLFYRITR--EDETKKVIFEKLDLLDS-DMKKHSFWALKWGASNDRLLSHRLVAT  144 (397)
T ss_dssp             EEEEEEETTTEEEEEEEE-EETTSCEEEEEEEE--CTTTCCEEEEEECCSCT-TGGGSCEEEEEEECCC----CEEEEEE
T ss_pred             EEecccccCCccccEEEE-EcCCCCEEEEEccC--Ccccccccceeeccccc-ccCCCcEEEEEEeeccCCCCceEEEEE
Confidence            67888    5   44444 44567777777765  33      344443210 0  1345677899    99998 6664


Q ss_pred             EeccCCCCCCceeEEEEEECCC------CCccCcE-----Eeee-------cCCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927          209 REDRRQDALNSTTEIVAIALNG------QNIQEPK-----VLVS-------GSDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (548)
Q Consensus       209 ~~~~~~~~~~~~~~l~~idl~~------g~~~~~~-----~L~~-------~~~~~~~p~~SPDGk~La~~~~~~~~~p~  270 (548)
                      ..+         ..|.++|+.+      ++.  ..     .+..       .........|+||| .|+...        
T Consensus       145 ~~d---------g~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~--------  204 (397)
T 1sq9_A          145 DVK---------GTTYIWKFHPFADESNSLT--LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF--------  204 (397)
T ss_dssp             ETT---------SCEEEEEEESSSSHHHHTT--TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC--------
T ss_pred             eCC---------CcEEEEeCCccccccccce--eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe--------
Confidence            333         2477777776      431  22     4421       23345677899999 665332        


Q ss_pred             CCceEEEEEecCCCceeeeEEEcC---C---CCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccc
Q 008927          271 DKAELWVGYISENGDVYKRVCVAG---F---DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD  344 (548)
Q Consensus       271 ~~~~L~v~~~~~~g~~~~~~~l~~---~---~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~  344 (548)
                      ....|.+.++.. ++  ....+..   .   .    ..+..+.|+|||++++......+...|..+|+.+++........
T Consensus       205 ~dg~i~i~d~~~-~~--~~~~~~~~~~h~~~~----~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~  277 (397)
T 1sq9_A          205 NNGTVQISELST-LR--PLYNFESQHSMINNS----NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP  277 (397)
T ss_dssp             TTSEEEEEETTT-TE--EEEEEECCC---CCC----CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred             CCCcEEEEECCC-Cc--eeEEEeccccccccC----CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccC
Confidence            245799999874 43  2333333   2   2    45778899999995444433133457888888777643332210


Q ss_pred             c--------ccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce
Q 008927          345 A--------EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (548)
Q Consensus       345 ~--------d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~  393 (548)
                      .        .+....   ......|.|   +++.|+ +...++  .|+++|+.+++.
T Consensus       278 ~~~~~~~~~~~~~~~---~v~~~~~~~---~~~~l~-~~~~dg--~i~iwd~~~~~~  325 (397)
T 1sq9_A          278 THSSQASLGEFAHSS---WVMSLSFND---SGETLC-SAGWDG--KLRFWDVKTKER  325 (397)
T ss_dssp             --------CCBSBSS---CEEEEEECS---SSSEEE-EEETTS--EEEEEETTTTEE
T ss_pred             cccccccccccccCC---cEEEEEECC---CCCEEE-EEeCCC--eEEEEEcCCCce
Confidence            0        000011   112345654   555554 444455  566778877754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.48  E-value=5e-05  Score=77.79  Aligned_cols=231  Identities=13%  Similarity=0.059  Sum_probs=138.3

Q ss_pred             CEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCcc
Q 008927          155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ  234 (548)
Q Consensus       155 ~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~  234 (548)
                      ..|+|.+  ...|+++++++  ++.+.+....    .....+.|+++++.|+++ +..       ...|++++++++.  
T Consensus        88 ~~l~~~~--~~~I~~i~~~~--~~~~~~~~~~----~~~~gl~~d~~~~~ly~~-D~~-------~~~I~r~~~~g~~--  149 (386)
T 3v65_B           88 PVLLFAN--RIDIRQVLPHR--SEYTLLLNNL----ENAIALDFHHRRELVFWS-DVT-------LDRILRANLNGSN--  149 (386)
T ss_dssp             CEEEEEC--BSCEEEECTTS--CCCEEEECSC----SCEEEEEEETTTTEEEEE-ETT-------TTEEEEEETTSCC--
T ss_pred             ceeEeec--CccceeeccCC--CcEEEEecCC----CccEEEEEecCCCeEEEE-eCC-------CCcEEEEecCCCC--
Confidence            3678876  45799999987  6666555431    235567899988887765 322       2579999999886  


Q ss_pred             CcEEee-ecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc
Q 008927          235 EPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (548)
Q Consensus       235 ~~~~L~-~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~  313 (548)
                       .+.+. .+...-...++++.+..|+|...       ....|+++++++  .. ...++....    .........|++.
T Consensus       150 -~~~~~~~~~~~p~glavd~~~g~lY~~d~-------~~~~I~~~~~dg--~~-~~~l~~~~l----~~P~giavdp~~g  214 (386)
T 3v65_B          150 -VEEVVSTGLESPGGLAVDWVHDKLYWTDS-------GTSRIEVANLDG--AH-RKVLLWQSL----EKPRAIALHPMEG  214 (386)
T ss_dssp             -EEEEECSSCSCCCCEEEETTTTEEEEEET-------TTTEEEECBTTS--CS-CEEEECSSC----SCEEEEEEETTTT
T ss_pred             -cEEEEeCCCCCccEEEEEeCCCeEEEEcC-------CCCeEEEEeCCC--Cc-eEEeecCCC----CCCcEEEEEcCCC
Confidence             55543 22222344577888888877652       235788888763  21 122333221    2344567788766


Q ss_pred             EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce
Q 008927          314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (548)
Q Consensus       314 L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~  393 (548)
                      .+|.+|. .....|+++++++...+.+...  .+   .|.   ..+++.+   +++.||++-  .+...|+++|++++..
T Consensus       215 ~ly~td~-~~~~~I~r~~~dG~~~~~~~~~--~~---~~P---nGlavd~---~~~~lY~aD--~~~~~I~~~d~dG~~~  280 (386)
T 3v65_B          215 TIYWTDW-GNTPRIEASSMDGSGRRIIADT--HL---FWP---NGLTIDY---AGRRMYWVD--AKHHVIERANLDGSHR  280 (386)
T ss_dssp             EEEEEEC-SSSCEEEEEETTSCSCEEEECS--SC---SCE---EEEEEEG---GGTEEEEEE--TTTTEEEEECTTSCSC
T ss_pred             eEEEecc-CCCCEEEEEeCCCCCcEEEEEC--CC---CCe---eeEEEeC---CCCEEEEEE--CCCCEEEEEeCCCCee
Confidence            4445555 2336799999876555544321  11   121   1245543   678888763  3455799999876655


Q ss_pred             Eeec-CCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          394 SLLD-IPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       394 ~~l~-~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      +.+. .....-.+++.+++.+|++-.   ....|.+++..+++
T Consensus       281 ~~~~~~~~~~P~giav~~~~ly~td~---~~~~V~~~~~~~G~  320 (386)
T 3v65_B          281 KAVISQGLPHPFAITVFEDSLYWTDW---HTKSINSANKFTGK  320 (386)
T ss_dssp             EEEECSSCSSEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred             EEEEECCCCCceEEEEECCEEEEeeC---CCCeEEEEECCCCc
Confidence            5443 222233344556777776542   34678888854554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.48  E-value=3.9e-05  Score=77.64  Aligned_cols=240  Identities=12%  Similarity=0.107  Sum_probs=130.9

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~Sp-DG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      .|++++..++++...++.|.+.++.+  ++...+..... ....+..+.|+| +++.|+....+         ..|.++|
T Consensus        80 ~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d---------~~i~iwd  147 (383)
T 3ei3_B           80 EWHPTHPTTVAVGSKGGDIILWDYDV--QNKTSFIQGMG-PGDAITGMKFNQFNTNQLFVSSIR---------GATTLRD  147 (383)
T ss_dssp             EECSSCTTEEEEEEBTSCEEEEETTS--TTCEEEECCCS-TTCBEEEEEEETTEEEEEEEEETT---------TEEEEEE
T ss_pred             EECCCCCCEEEEEcCCCeEEEEeCCC--cccceeeecCC-cCCceeEEEeCCCCCCEEEEEeCC---------CEEEEEE
Confidence            45566633444444577788888876  44433322100 123566788999 55655554322         3688889


Q ss_pred             CCCCCccCcEEeeecC---CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCc
Q 008927          228 LNGQNIQEPKVLVSGS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT  304 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~---~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~  304 (548)
                      +.++.   .+.+....   ..+....|+|||+.|+...        ....|++.++.  ++  ....+....    ..+.
T Consensus       148 ~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d~~i~i~d~~--~~--~~~~~~~h~----~~v~  208 (383)
T 3ei3_B          148 FSGSV---IQVFAKTDSWDYWYCCVDVSVSRQMLATGD--------STGRLLLLGLD--GH--EIFKEKLHK----AKVT  208 (383)
T ss_dssp             TTSCE---EEEEECCCCSSCCEEEEEEETTTTEEEEEE--------TTSEEEEEETT--SC--EEEEEECSS----SCEE
T ss_pred             CCCCc---eEEEeccCCCCCCeEEEEECCCCCEEEEEC--------CCCCEEEEECC--CC--EEEEeccCC----CcEE
Confidence            98765   55554332   3466778999999887544        13579999985  32  233444433    4578


Q ss_pred             CceECcCCc-EEEEEeCCCCeeeEEEEeccC----CeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC
Q 008927          305 EPKWSSKGE-LFFVTDRKNGFWNLHKWIESN----NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (548)
Q Consensus       305 ~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~----g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g  379 (548)
                      ...|+|+++ +++.... ++  .|..+|+.+    ++.......    ..+     .....|.   +.++.++++...++
T Consensus       209 ~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~----~~~-----v~~~~~s---~~~~~~l~~~~~d~  273 (383)
T 3ei3_B          209 HAEFNPRCDWLMATSSV-DA--TVKLWDLRNIKDKNSYIAEMPH----EKP-----VNAAYFN---PTDSTKLLTTDQRN  273 (383)
T ss_dssp             EEEECSSCTTEEEEEET-TS--EEEEEEGGGCCSTTCEEEEEEC----SSC-----EEEEEEC---TTTSCEEEEEESSS
T ss_pred             EEEECCCCCCEEEEEeC-CC--EEEEEeCCCCCcccceEEEecC----CCc-----eEEEEEc---CCCCCEEEEEcCCC
Confidence            899999999 7777655 55  456666655    222222211    111     1123444   11334444554454


Q ss_pred             eEEEEEEECCCCce-EeecCC----C---ceeE-eeeecCCEEEEEEe-----cCCCCCeEEEEEcCCCce
Q 008927          380 RSYLGILDDFGHSL-SLLDIP----F---TDID-NITLGNDCLFVEGA-----SGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       380 ~~~L~~~dl~~g~~-~~l~~~----~---~~~~-~~s~d~~~l~~~~s-----s~~~p~~l~~~d~~~~~~  436 (548)
                        .|.++|+.+++. ..+...    .   ..+. .+.+++..+.+..+     +......|+++|+.+++.
T Consensus       274 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~  342 (383)
T 3ei3_B          274 --EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGL  342 (383)
T ss_dssp             --EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCE
T ss_pred             --cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCce
Confidence              466778776643 222210    0   0111 11334444433322     112456788999877763

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.48  E-value=9.9e-05  Score=74.42  Aligned_cols=231  Identities=13%  Similarity=0.043  Sum_probs=138.0

Q ss_pred             CEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCcc
Q 008927          155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ  234 (548)
Q Consensus       155 ~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~  234 (548)
                      ..|+|.+  ...|+++++++  .+.+.+....    .+...+.|+++++.|+++ +..       ...|++++++++.  
T Consensus        45 ~~ll~~~--~~~I~~i~~~g--~~~~~~~~~~----~~~~~l~~d~~~~~ly~~-D~~-------~~~I~r~~~~g~~--  106 (349)
T 3v64_C           45 PVLLFAN--RIDIRQVLPHR--SEYTLLLNNL----ENAIALDFHHRRELVFWS-DVT-------LDRILRANLNGSN--  106 (349)
T ss_dssp             CEEEEEC--BSCEEEECTTS--CCEEEEECSC----SCEEEEEEETTTTEEEEE-ETT-------TTEEEEEETTSCS--
T ss_pred             ceeEeec--ccceEEEeCCC--CeeEEeecCC----CceEEEEEeccccEEEEE-ecc-------CCceEEEecCCCC--
Confidence            3688886  45699999987  5555554431    234567899988887765 321       2479999999887  


Q ss_pred             CcEEee-ecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc
Q 008927          235 EPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (548)
Q Consensus       235 ~~~~L~-~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~  313 (548)
                       .+.+. .+...-...++++.+..|+|...       ....|+++++++  .. ...++....    ......+.+|++.
T Consensus       107 -~~~~~~~~~~~p~glavd~~~g~ly~~d~-------~~~~I~~~~~dG--~~-~~~l~~~~l----~~P~~iavdp~~g  171 (349)
T 3v64_C          107 -VEEVVSTGLESPGGLAVDWVHDKLYWTDS-------GTSRIEVANLDG--AH-RKVLLWQSL----EKPRAIALHPMEG  171 (349)
T ss_dssp             -CEEEECSSCSCCCEEEEETTTTEEEEEET-------TTTEEEEEETTS--CS-CEEEECTTC----SCEEEEEEETTTT
T ss_pred             -ceEEEeCCCCCccEEEEecCCCeEEEEcC-------CCCeEEEEcCCC--Cc-eEEEEeCCC----CCcceEEEecCcC
Confidence             55553 23223345678888888887652       245799999863  21 122333221    2345567888766


Q ss_pred             EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce
Q 008927          314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (548)
Q Consensus       314 L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~  393 (548)
                      .+|.+|. .....|+++++++...+.+...  .+..|      ..+++.+   +++.||++-  .+...|+++|++++..
T Consensus       172 ~ly~td~-~~~~~I~r~~~dG~~~~~~~~~--~~~~P------nGla~d~---~~~~lY~aD--~~~~~I~~~~~dG~~~  237 (349)
T 3v64_C          172 TIYWTDW-GNTPRIEASSMDGSGRRIIADT--HLFWP------NGLTIDY---AGRRMYWVD--AKHHVIERANLDGSHR  237 (349)
T ss_dssp             EEEEEEC-SSSCEEEEEETTSCSCEESCCS--SCSCE------EEEEEET---TTTEEEEEE--TTTTEEEEEETTSCSC
T ss_pred             eEEEecc-CCCCEEEEEeCCCCCcEEEEEC--CCCCc------ceEEEeC---CCCEEEEEE--CCCCEEEEEeCCCCce
Confidence            4445554 2236799999876555544321  11112      1244543   678888763  3445799999876655


Q ss_pred             Eeec-CCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          394 SLLD-IPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       394 ~~l~-~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      +.+. .....-.+++.+++.+|++-.   ....|.+++..+|+
T Consensus       238 ~~~~~~~~~~P~giav~~~~ly~td~---~~~~V~~~~~~~G~  277 (349)
T 3v64_C          238 KAVISQGLPHPFAITVFEDSLYWTDW---HTKSINSANKFTGK  277 (349)
T ss_dssp             EEEECSSCSSEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred             EEEEeCCCCCceEEEEECCEEEEecC---CCCeEEEEEccCCC
Confidence            4433 232223344456777766532   34678888854454

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.48  E-value=3.1e-05  Score=83.31  Aligned_cols=238  Identities=8%  Similarity=0.055  Sum_probs=136.1

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCC----Cc-eecCCCCCCCCce-ecceeeCC--CCCEEEEEEeccCCCCCCce
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDS----SP-LPITPDYGEPLVS-YADGIFDP--RFNRYVTVREDRRQDALNST  220 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~----~~-~~lT~~~~~~~~~-~~~~~~Sp--DG~~i~~v~~~~~~~~~~~~  220 (548)
                      +|+++++.|++..  ++.|.+.+++.  +    +. +.+...    ... +..+.|+|  ||+.|+....+         
T Consensus        25 ~~spdg~~l~~~~--~~~v~v~~~~~--~~~~~~~~~~~~~h----~~~~v~~~~~sp~~~~~~l~s~~~d---------   87 (615)
T 1pgu_A           25 SYDPTTNAIAYPC--GKSAFVRCLDD--GDSKVPPVVQFTGH----GSSVVTTVKFSPIKGSQYLCSGDES---------   87 (615)
T ss_dssp             EEETTTTEEEEEE--TTEEEEEECCS--SCCSSCSEEEECTT----TTSCEEEEEECSSTTCCEEEEEETT---------
T ss_pred             EECCCCCEEEEec--CCeEEEEECCC--CCCccccceEEecC----CCceEEEEEECcCCCCCEEEEecCC---------
Confidence            7888999999988  56788888875  4    33 344433    234 67788999  99987765433         


Q ss_pred             eEEEEEECCCC------CccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcC
Q 008927          221 TEIVAIALNGQ------NIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG  294 (548)
Q Consensus       221 ~~l~~idl~~g------~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~  294 (548)
                      ..|.++|+.++      +......+......+....|||||++|+....+..    ....|++.+  . ++  ....+.+
T Consensus        88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~v~~~d--~-~~--~~~~~~~  158 (615)
T 1pgu_A           88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD----NFGVFISWD--S-GN--SLGEVSG  158 (615)
T ss_dssp             SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS----CSEEEEETT--T-CC--EEEECCS
T ss_pred             CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCC----CccEEEEEE--C-CC--cceeeec
Confidence            35777777654      20002223323445677899999999986653221    124566555  2 32  2333444


Q ss_pred             CCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCC-CCEEE
Q 008927          295 FDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGE-KNLIA  372 (548)
Q Consensus       295 ~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d-~~~l~  372 (548)
                      ..    ..+....|+|||+ +++.... ++  .|..+|+.+++...........+.+     .....+.|   + ++.| 
T Consensus       159 ~~----~~v~~~~~~~~~~~~l~~~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~~-----v~~~~~~~---~~~~~l-  222 (615)
T 1pgu_A          159 HS----QRINACHLKQSRPMRSMTVGD-DG--SVVFYQGPPFKFSASDRTHHKQGSF-----VRDVEFSP---DSGEFV-  222 (615)
T ss_dssp             CS----SCEEEEEECSSSSCEEEEEET-TT--EEEEEETTTBEEEEEECSSSCTTCC-----EEEEEECS---TTCCEE-
T ss_pred             CC----ccEEEEEECCCCCcEEEEEeC-CC--cEEEEeCCCcceeeeecccCCCCce-----EEEEEECC---CCCCEE-
Confidence            33    4577899999998 6666555 45  4566677676654332211100001     12245654   5 5544 


Q ss_pred             EEEEeCCeEEEEEEECCCCceE-ee-c---CCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          373 CSYRQNGRSYLGILDDFGHSLS-LL-D---IPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       373 ~~~~~~g~~~L~~~dl~~g~~~-~l-~---~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      ++...++  .|+++|+.+++.. .+ .   .....+..+  + +++.++ +++.   ...|.++|+.+++
T Consensus       223 ~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~---d~~i~~wd~~~~~  285 (615)
T 1pgu_A          223 ITVGSDR--KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFA-TVGA---DATIRVWDVTTSK  285 (615)
T ss_dssp             EEEETTC--CEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEE-EEET---TSEEEEEETTTTE
T ss_pred             EEEeCCC--eEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEE-EEcC---CCcEEEEECCCCc
Confidence            4444444  4677788887654 44 2   222334444  4 555554 3332   2568888887665

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.46  E-value=0.00013  Score=74.48  Aligned_cols=149  Identities=13%  Similarity=0.082  Sum_probs=92.2

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      +|++++..|+... .++.|.+.++..  ++.. .+...    ...+..+.|+|||+.|+....+         ..|.++|
T Consensus       130 ~~s~dg~~l~s~~-~d~~i~iwd~~~--~~~~~~~~~h----~~~v~~~~~~p~~~~l~s~s~d---------~~v~iwd  193 (393)
T 1erj_A          130 CFSPDGKFLATGA-EDRLIRIWDIEN--RKIVMILQGH----EQDIYSLDYFPSGDKLVSGSGD---------RTVRIWD  193 (393)
T ss_dssp             EECTTSSEEEEEE-TTSCEEEEETTT--TEEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEEEE
T ss_pred             EECCCCCEEEEEc-CCCeEEEEECCC--CcEEEEEccC----CCCEEEEEEcCCCCEEEEecCC---------CcEEEEE
Confidence            5666777666543 567788888876  4443 33332    2345678899999988765433         3688889


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECC-CCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEE-------cCCCCCc
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-------AGFDPTI  299 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SP-DGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l-------~~~~~~~  299 (548)
                      +.+++   ........+......|+| ||+.|+-...        ...|.+.|+.. +..  ...+       .+..   
T Consensus       194 ~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~s~--------d~~v~iwd~~~-~~~--~~~~~~~~~~~~~h~---  256 (393)
T 1erj_A          194 LRTGQ---CSLTLSIEDGVTTVAVSPGDGKYIAAGSL--------DRAVRVWDSET-GFL--VERLDSENESGTGHK---  256 (393)
T ss_dssp             TTTTE---EEEEEECSSCEEEEEECSTTCCEEEEEET--------TSCEEEEETTT-CCE--EEEEC------CCCS---
T ss_pred             CCCCe---eEEEEEcCCCcEEEEEECCCCCEEEEEcC--------CCcEEEEECCC-CcE--EEeecccccCCCCCC---
Confidence            99886   444444444566778999 8998875442        24578888874 432  1222       1211   


Q ss_pred             ccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccC
Q 008927          300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN  334 (548)
Q Consensus       300 ~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~  334 (548)
                       ..+....|+|||++++.... ++.  |.++|+.+
T Consensus       257 -~~v~~v~~~~~g~~l~s~s~-d~~--v~~wd~~~  287 (393)
T 1erj_A          257 -DSVYSVVFTRDGQSVVSGSL-DRS--VKLWNLQN  287 (393)
T ss_dssp             -SCEEEEEECTTSSEEEEEET-TSE--EEEEEC--
T ss_pred             -CCEEEEEECCCCCEEEEEeC-CCE--EEEEECCC
Confidence             45677899999995555544 454  44455543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.46  E-value=6.2e-05  Score=73.92  Aligned_cols=238  Identities=11%  Similarity=0.037  Sum_probs=132.5

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +|+|++..|+-. ..++.|.+.++..+ ...+.+...    ........|+||++.|+....+         ..|.++|+
T Consensus        20 ~fsp~~~~l~s~-~~dg~v~lWd~~~~-~~~~~~~~~----~~~v~~~~~~~~~~~l~s~s~d---------~~i~vwd~   84 (304)
T 2ynn_A           20 DFHPTEPWVLTT-LYSGRVELWNYETQ-VEVRSIQVT----ETPVRAGKFIARKNWIIVGSDD---------FRIRVFNY   84 (304)
T ss_dssp             EECSSSSEEEEE-ETTSEEEEEETTTT-EEEEEEECC----SSCEEEEEEEGGGTEEEEEETT---------SEEEEEET
T ss_pred             EECCCCCEEEEE-cCCCcEEEEECCCC-ceeEEeecc----CCcEEEEEEeCCCCEEEEECCC---------CEEEEEEC
Confidence            567777666544 35677777787651 223344332    1234566799999987765433         36888899


Q ss_pred             CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      .+++.  ...+....+.+....|+||++.|+-.+.        ...|.+.|+..+..  ....+.+..    ..+....|
T Consensus        85 ~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~sgs~--------D~~v~lWd~~~~~~--~~~~~~~h~----~~v~~v~~  148 (304)
T 2ynn_A           85 NTGEK--VVDFEAHPDYIRSIAVHPTKPYVLSGSD--------DLTVKLWNWENNWA--LEQTFEGHE----HFVMCVAF  148 (304)
T ss_dssp             TTCCE--EEEEECCSSCEEEEEECSSSSEEEEEET--------TSCEEEEEGGGTTE--EEEEECCCC----SCEEEEEE
T ss_pred             CCCcE--EEEEeCCCCcEEEEEEcCCCCEEEEECC--------CCeEEEEECCCCcc--hhhhhcccC----CcEEEEEE
Confidence            98871  2334444556777899999998874332        34588888874222  123344433    45778899


Q ss_pred             CcC-CcEEEEEeCCCCeeeEEEEeccCCeeE-eecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927          309 SSK-GELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (548)
Q Consensus       309 spD-G~L~~~sd~~~g~~~Ly~~d~~~g~~~-~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~  386 (548)
                      +|+ +.+++.... ++  .|..+|+..++.. .+....   ...     .....+.+ . .++.++++...++.  |.+.
T Consensus       149 ~p~~~~~l~sgs~-D~--~v~iwd~~~~~~~~~~~~~~---~~~-----v~~~~~~~-~-~~~~~l~s~s~D~~--i~iW  213 (304)
T 2ynn_A          149 NPKDPSTFASGCL-DR--TVKVWSLGQSTPNFTLTTGQ---ERG-----VNYVDYYP-L-PDKPYMITASDDLT--IKIW  213 (304)
T ss_dssp             CTTCTTEEEEEET-TS--EEEEEETTCSSCSEEEECCC---TTC-----EEEEEECC-S-TTCCEEEEEETTSE--EEEE
T ss_pred             CCCCCCEEEEEeC-CC--eEEEEECCCCCccceeccCC---cCc-----EEEEEEEE-c-CCCCEEEEEcCCCe--EEEE
Confidence            994 566666544 45  4555666544322 221110   000     01112221 0 23344556655664  5566


Q ss_pred             ECCCCce-EeecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          387 DDFGHSL-SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       387 dl~~g~~-~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      |+.+++. ..+......+..+  ++++..| +.++.   -..|.++|+.+++.
T Consensus       214 d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~s~s~---Dg~i~iWd~~~~~~  262 (304)
T 2ynn_A          214 DYQTKSCVATLEGHMSNVSFAVFHPTLPII-ISGSE---DGTLKIWNSSTYKV  262 (304)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECSSSSEE-EEEET---TSCEEEEETTTCCE
T ss_pred             eCCCCccceeeCCCCCCEEEEEECCCCCEE-EEEcC---CCeEEEEECCCCce
Confidence            8877753 3444333334433  5666644 34433   25688888877664

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.43  E-value=0.00013  Score=78.56  Aligned_cols=245  Identities=9%  Similarity=0.024  Sum_probs=134.9

Q ss_pred             eeeEEECCEEEEEeCCCCeEEEEeCC--CCCCC-ceecCCCCCCCCceecceeeC----CCCCEEEEEEeccCCCCCCce
Q 008927          148 GAFRIFGDTVIFSNYKDQRLYKHSID--SKDSS-PLPITPDYGEPLVSYADGIFD----PRFNRYVTVREDRRQDALNST  220 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~~~~Ly~~~~~--~~~~~-~~~lT~~~~~~~~~~~~~~~S----pDG~~i~~v~~~~~~~~~~~~  220 (548)
                      ..+++||++||..+ +++.|+++|+.  .  .+ ...|..+     ..-..+.+|    |||++++...+..        
T Consensus       202 v~~SpDGr~lyv~~-~dg~V~viD~~~~t--~~~v~~i~~G-----~~P~~ia~s~~~~pDGk~l~v~n~~~--------  265 (567)
T 1qks_A          202 SRLSASGRYLFVIG-RDGKVNMIDLWMKE--PTTVAEIKIG-----SEARSIETSKMEGWEDKYAIAGAYWP--------  265 (567)
T ss_dssp             EEECTTSCEEEEEE-TTSEEEEEETTSSS--CCEEEEEECC-----SEEEEEEECCSTTCTTTEEEEEEEET--------
T ss_pred             eEECCCCCEEEEEc-CCCeEEEEECCCCC--CcEeEEEecC-----CCCceeEEccccCCCCCEEEEEEccC--------
Confidence            46777888777655 57799999995  3  22 2344332     123356799    7999976654432        


Q ss_pred             eEEEEEECCCCCccCcEEeee-cC---------C-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeee
Q 008927          221 TEIVAIALNGQNIQEPKVLVS-GS---------D-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR  289 (548)
Q Consensus       221 ~~l~~idl~~g~~~~~~~L~~-~~---------~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~  289 (548)
                      +.+.++|..+.+.  .+.+.- +.         . .......|+++..++ +...      +..+|+++|......+ ..
T Consensus       266 ~~v~ViD~~t~~~--~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v-v~~~------~~g~v~~vd~~~~~~~-~v  335 (567)
T 1qks_A          266 PQYVIMDGETLEP--KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI-VNVK------ETGKILLVDYTDLNNL-KT  335 (567)
T ss_dssp             TEEEEEETTTCCE--EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE-EEET------TTTEEEEEETTCSSEE-EE
T ss_pred             CeEEEEECCCCcE--EEEEeccccccccccccCCCceEEEEEcCCCCEEE-EEec------CCCeEEEEecCCCccc-ee
Confidence            4788999888762  222221 10         1 233456788877554 3321      2568999998742211 12


Q ss_pred             EEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCc-ceeeeeecCCC
Q 008927          290 VCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGIN-SYEIIQSHGEK  368 (548)
Q Consensus       290 ~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~-~~~~~~~~~d~  368 (548)
                      ..+...     .......|+|||+.+|+++..+  ..|..+|.+++++....+....  .|  .++.. .| +.|   ++
T Consensus       336 ~~i~~~-----~~~~d~~~~pdgr~~~va~~~s--n~V~ViD~~t~kl~~~i~vgg~--~P--hpg~g~~~-~~p---~~  400 (567)
T 1qks_A          336 TEISAE-----RFLHDGGLDGSHRYFITAANAR--NKLVVIDTKEGKLVAIEDTGGQ--TP--HPGRGANF-VHP---TF  400 (567)
T ss_dssp             EEEECC-----SSEEEEEECTTSCEEEEEEGGG--TEEEEEETTTTEEEEEEECSSS--SB--CCTTCEEE-EET---TT
T ss_pred             eeeecc-----ccccCceECCCCCEEEEEeCCC--CeEEEEECCCCcEEEEEeccCc--CC--CCccceee-ECC---CC
Confidence            222221     2344568999999666665423  3688899999886554432001  11  11111 11 222   45


Q ss_pred             CEEEEEEEeCCeEEEEEEECCCCc--------eEeecCC-Cce-eEeeeecCCEEEEEEe-cCC--CCCeEEEEEcCCC
Q 008927          369 NLIACSYRQNGRSYLGILDDFGHS--------LSLLDIP-FTD-IDNITLGNDCLFVEGA-SGV--EPSSVAKVTLDDH  434 (548)
Q Consensus       369 ~~l~~~~~~~g~~~L~~~dl~~g~--------~~~l~~~-~~~-~~~~s~d~~~l~~~~s-s~~--~p~~l~~~d~~~~  434 (548)
                      +.++++ ..-+...|.++|.++++        ++.+... .+. +-..+++++++|+... .++  ....|.++|..+.
T Consensus       401 g~v~~t-~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          401 GPVWAT-SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             EEEEEE-EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             CcEEEe-CCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            666543 33344568888877632        2344432 111 1123678888776432 111  1348999998655

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.42  E-value=4.1e-06  Score=98.82  Aligned_cols=280  Identities=12%  Similarity=0.041  Sum_probs=153.1

Q ss_pred             ccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEE
Q 008927           90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY  168 (548)
Q Consensus        90 ~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly  168 (548)
                      .+..+.++| |+.++.-.    ++|...+|.....  .....+......+.       .-.|++++..|+.. ..++.|.
T Consensus       963 ~i~~~~~sp~g~~l~~g~----~~g~i~i~d~~~~--~~~~~~~~h~~~v~-------~l~~s~dg~~l~s~-~~dg~i~ 1028 (1249)
T 3sfz_A          963 QVSCCCLSPHLEYVAFGD----EDGAIKIIELPNN--RVFSSGVGHKKAVR-------HIQFTADGKTLISS-SEDSVIQ 1028 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEE----TTSCCEEEETTTT--SCEEECCCCSSCCC-------CEEECSSSSCEEEE-CSSSBEE
T ss_pred             cEEEEEEcCCCCEEEEEc----CCCCEEEEEcCCC--ceeeecccCCCceE-------EEEECCCCCEEEEE-cCCCEEE
Confidence            455677888 66555443    2577777766432  12222222211111       23577777766554 4577888


Q ss_pred             EEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceee
Q 008927          169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAF  248 (548)
Q Consensus       169 ~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~  248 (548)
                      +.++..  ++...+...    ......+.|+|++.. +....+         ..|.++|+.+++.  .+.+......+..
T Consensus      1029 vwd~~~--~~~~~~~~~----~~~v~~~~~~~~~~l-~~~~~d---------g~v~vwd~~~~~~--~~~~~~~~~~v~~ 1090 (1249)
T 3sfz_A         1029 VWNWQT--GDYVFLQAH----QETVKDFRLLQDSRL-LSWSFD---------GTVKVWNVITGRI--ERDFTCHQGTVLS 1090 (1249)
T ss_dssp             EEETTT--TEEECCBCC----SSCEEEEEECSSSEE-EEEESS---------SEEEEEETTTTCC--CEEEECCSSCCCC
T ss_pred             EEECCC--CceEEEecC----CCcEEEEEEcCCCcE-EEEECC---------CcEEEEECCCCce--eEEEcccCCcEEE
Confidence            888876  554444432    234667789998754 343332         3689999998872  3445444445677


Q ss_pred             eEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEE
Q 008927          249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH  328 (548)
Q Consensus       249 p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly  328 (548)
                      ..|||||+.|+....        ...|.+.++.. ++  ....+.+..    ..+..+.|+|||++++.... +|.  |.
T Consensus      1091 ~~~s~d~~~l~s~s~--------d~~v~iwd~~~-~~--~~~~l~~h~----~~v~~~~~s~dg~~lat~~~-dg~--i~ 1152 (1249)
T 3sfz_A         1091 CAISSDATKFSSTSA--------DKTAKIWSFDL-LS--PLHELKGHN----GCVRCSAFSLDGILLATGDD-NGE--IR 1152 (1249)
T ss_dssp             EEECSSSSSCEEECC--------SSCCCEECSSS-SS--CSBCCCCCS----SCEEEEEECSSSSEEEEEET-TSC--CC
T ss_pred             EEECCCCCEEEEEcC--------CCcEEEEECCC-cc--eeeeeccCC----CcEEEEEECCCCCEEEEEeC-CCE--EE
Confidence            899999998875442        23577778774 43  122333332    45678899999995555544 454  55


Q ss_pred             EEeccCCeeEeec-ccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eecCCCceeEee
Q 008927          329 KWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTDIDNI  406 (548)
Q Consensus       329 ~~d~~~g~~~~l~-~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~~~~~~~~~~  406 (548)
                      .+|+.+++..... +..................|+|   +++.|+..   +|  .|.++|+.+|+.. .+......+..+
T Consensus      1153 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~---dg~~l~s~---~g--~v~vwd~~~g~~~~~~~~~~~~i~~~ 1224 (1249)
T 3sfz_A         1153 IWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP---DSKTLVSA---GG--YLKWWNVATGDSSQTFYTNGTNLKKI 1224 (1249)
T ss_dssp             EEESSSSCCCCCCCCCC-------CCSCCCEEEECT---TSSCEEEE---SS--SEEEBCSSSCBCCCCCCCSSCCCCCC
T ss_pred             EEECCCCceEEEeccccccccccccCceEEEEEECC---CCCEEEEC---CC--eEEEEECCCCceeeeeeccCCcccEE
Confidence            6677676643221 1100000000111123356664   66666533   23  5777888887643 222222223333


Q ss_pred             --eecCCEEEEEEecCCCCCeEEEEEc
Q 008927          407 --TLGNDCLFVEGASGVEPSSVAKVTL  431 (548)
Q Consensus       407 --s~d~~~l~~~~ss~~~p~~l~~~d~  431 (548)
                        +++++.++....    .+.++++++
T Consensus      1225 ~~s~dg~~l~~~~~----dg~v~vw~l 1247 (1249)
T 3sfz_A         1225 HVSPDFRTYVTVDN----LGILYILQV 1247 (1249)
T ss_dssp             EECSSSCCEEEECT----TCCEEEECC
T ss_pred             EECCCCCEEEEecC----CcEEEEEee
Confidence              677776654332    245666553

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.41  E-value=7.3e-05  Score=74.90  Aligned_cols=199  Identities=12%  Similarity=0.090  Sum_probs=106.5

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc--e-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP--L-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~--~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      +|+|++..|+-.. .++.|.+.++.+  +..  + .+...   ....+..+.|+|||+.|+....+.         .+.+
T Consensus        23 ~~sp~g~~las~~-~D~~i~iw~~~~--~~~~~~~~~~~~---h~~~v~~~~~sp~g~~l~s~s~D~---------~v~i   87 (345)
T 3fm0_A           23 AWNPAGTLLASCG-GDRRIRIWGTEG--DSWICKSVLSEG---HQRTVRKVAWSPCGNYLASASFDA---------TTCI   87 (345)
T ss_dssp             EECTTSSCEEEEE-TTSCEEEEEEET--TEEEEEEEECSS---CSSCEEEEEECTTSSEEEEEETTS---------CEEE
T ss_pred             EECCCCCEEEEEc-CCCeEEEEEcCC--Ccceeeeeeccc---cCCcEEEEEECCCCCEEEEEECCC---------cEEE
Confidence            5667777666544 455555555554  321  1 12221   123466788999999887754432         3555


Q ss_pred             EECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcC
Q 008927          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (548)
Q Consensus       226 idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~  305 (548)
                      +++.++.......+....+.+....|+|||+.|+-.+.        ...|.+.++...........+.+..    ..+..
T Consensus        88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~--------D~~v~iwd~~~~~~~~~~~~~~~h~----~~v~~  155 (345)
T 3fm0_A           88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR--------DKSVWVWEVDEEDEYECVSVLNSHT----QDVKH  155 (345)
T ss_dssp             EEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET--------TSCEEEEEECTTSCEEEEEEECCCC----SCEEE
T ss_pred             EEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC--------CCeEEEEECCCCCCeEEEEEecCcC----CCeEE
Confidence            56666540001223333445677899999999885542        2458888887433221223344333    45678


Q ss_pred             ceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (548)
Q Consensus       306 ~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~  385 (548)
                      ..|+|||++++.... ++.-.||  +..+++...+..... ...+     .....|.|   +++.| ++...++.-+||.
T Consensus       156 ~~~~p~~~~l~s~s~-d~~i~~w--~~~~~~~~~~~~~~~-h~~~-----v~~l~~sp---~g~~l-~s~s~D~~v~iW~  222 (345)
T 3fm0_A          156 VVWHPSQELLASASY-DDTVKLY--REEEDDWVCCATLEG-HEST-----VWSLAFDP---SGQRL-ASCSDDRTVRIWR  222 (345)
T ss_dssp             EEECSSSSCEEEEET-TSCEEEE--EEETTEEEEEEEECC-CSSC-----EEEEEECT---TSSEE-EEEETTSCEEEEE
T ss_pred             EEECCCCCEEEEEeC-CCcEEEE--EecCCCEEEEEEecC-CCCc-----eEEEEECC---CCCEE-EEEeCCCeEEEec
Confidence            899999995455444 4544444  444554332211100 0111     12245654   55554 4566677777776


Q ss_pred             EE
Q 008927          386 LD  387 (548)
Q Consensus       386 ~d  387 (548)
                      ..
T Consensus       223 ~~  224 (345)
T 3fm0_A          223 QY  224 (345)
T ss_dssp             EE
T ss_pred             cc
Confidence            54

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.41  E-value=0.00016  Score=72.27  Aligned_cols=264  Identities=12%  Similarity=0.062  Sum_probs=138.6

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L  167 (548)
                      ..+..+.++| |+.++ ...   .+|...||.....  .....+......    +   -.-+|++++..|+-.. .++.+
T Consensus        56 ~~v~~~~~s~d~~~l~-s~s---~Dg~v~iWd~~~~--~~~~~~~~~~~~----v---~~~~~s~~~~~l~s~~-~d~~v  121 (340)
T 1got_B           56 AKIYAMHWGTDSRLLL-SAS---QDGKLIIWDSYTT--NKVHAIPLRSSW----V---MTCAYAPSGNYVACGG-LDNIC  121 (340)
T ss_dssp             SCEEEEEECTTSSEEE-EEE---TTTEEEEEETTTC--CEEEEEECSSSC----E---EEEEECTTSSEEEEEE-TTCEE
T ss_pred             CceEEEEECCCCCEEE-EEe---CCCcEEEEECCCC--CcceEeecCCcc----E---EEEEECCCCCEEEEEe-CCCeE
Confidence            4566788888 55443 322   2577777765332  112222211111    1   0125666676665543 46677


Q ss_pred             EEEeCCCCCCCce---ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcE-EeeecC
Q 008927          168 YKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK-VLVSGS  243 (548)
Q Consensus       168 y~~~~~~~~~~~~---~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~-~L~~~~  243 (548)
                      .+.++...++..+   .+...    ........|++++. |+....+         ..|.++|+.+++   .. .+....
T Consensus       122 ~iw~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~-l~s~s~d---------~~i~~wd~~~~~---~~~~~~~h~  184 (340)
T 1got_B          122 SIYNLKTREGNVRVSRELAGH----TGYLSCCRFLDDNQ-IVTSSGD---------TTCALWDIETGQ---QTTTFTGHT  184 (340)
T ss_dssp             EEEETTTCSBSCEEEEEEECC----SSCEEEEEEEETTE-EEEEETT---------SCEEEEETTTTE---EEEEECCCS
T ss_pred             EEEECccCCCcceeEEEecCC----CccEEEEEECCCCc-EEEEECC---------CcEEEEECCCCc---EEEEEcCCC
Confidence            7777764211122   22222    12344567888875 4443322         358888998886   33 333334


Q ss_pred             CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCC
Q 008927          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG  323 (548)
Q Consensus       244 ~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g  323 (548)
                      +.+....|+|||+.|+-...        ...|.+.|+.. +.  ....+.+..    ..+....|+|||++++.... +|
T Consensus       185 ~~v~~~~~~~~~~~l~sg~~--------d~~v~~wd~~~-~~--~~~~~~~h~----~~v~~v~~~p~~~~l~s~s~-d~  248 (340)
T 1got_B          185 GDVMSLSLAPDTRLFVSGAC--------DASAKLWDVRE-GM--CRQTFTGHE----SDINAICFFPNGNAFATGSD-DA  248 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEET--------TSCEEEEETTT-CS--EEEEECCCS----SCEEEEEECTTSSEEEEEET-TS
T ss_pred             CceEEEEECCCCCEEEEEeC--------CCcEEEEECCC-Ce--eEEEEcCCc----CCEEEEEEcCCCCEEEEEcC-CC
Confidence            45667889999997764331        34688889874 43  233444433    45778899999995555444 44


Q ss_pred             eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eecCCCce
Q 008927          324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTD  402 (548)
Q Consensus       324 ~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~~~~~~  402 (548)
                        .|..+|+.+++........      ....+.....|.|   +++.| ++...++.  |.++|..+++.. .+......
T Consensus       249 --~v~iwd~~~~~~~~~~~~~------~~~~~v~~~~~s~---~g~~l-~~g~~d~~--i~vwd~~~~~~~~~~~~h~~~  314 (340)
T 1got_B          249 --TCRLFDLRADQELMTYSHD------NIICGITSVSFSK---SGRLL-LAGYDDFN--CNVWDALKADRAGVLAGHDNR  314 (340)
T ss_dssp             --CEEEEETTTTEEEEEECCT------TCCSCEEEEEECT---TSSEE-EEEETTSE--EEEEETTTCCEEEEEECCSSC
T ss_pred             --cEEEEECCCCcEEEEEccC------CcccceEEEEECC---CCCEE-EEECCCCe--EEEEEcccCcEeeEeecCCCc
Confidence              4556677666543222111      0011122345654   55544 45555554  566687666543 33332333


Q ss_pred             eEee--eecCCEE
Q 008927          403 IDNI--TLGNDCL  413 (548)
Q Consensus       403 ~~~~--s~d~~~l  413 (548)
                      +..+  ++++..|
T Consensus       315 v~~~~~s~dg~~l  327 (340)
T 1got_B          315 VSCLGVTDDGMAV  327 (340)
T ss_dssp             EEEEEECTTSSCE
T ss_pred             EEEEEEcCCCCEE
Confidence            4444  4555544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.41  E-value=0.00019  Score=71.16  Aligned_cols=230  Identities=10%  Similarity=0.039  Sum_probs=132.3

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCC----C
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG----Q  231 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~----g  231 (548)
                      .|+|.+  ...|.++++++  .+...+.+..    .+...+.|+++++.|+++ ...       ...|+++++++    .
T Consensus         3 ~ll~~~--~~~I~~i~~~~--~~~~~~~~~~----~~p~g~~~d~~~~~ly~~-D~~-------~~~I~~~~~~g~~~~~   66 (316)
T 1ijq_A            3 YLFFTN--RHEVRKMTLDR--SEYTSLIPNL----RNVVALDTEVASNRIYWS-DLS-------QRMICSTQLDRAHGVS   66 (316)
T ss_dssp             EEEEEC--BSSEEEEETTS--CCCEEEECSC----SSEEEEEEETTTTEEEEE-ETT-------TTEEEEEEC-------
T ss_pred             EEEEEC--CCeEEEEECCC--cceEehhcCC----CceEEEEEEeCCCEEEEE-ECC-------CCcEEEEECCCCCCCc
Confidence            478887  45699999987  5555554321    234567899988887765 321       25799999987    3


Q ss_pred             CccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc
Q 008927          232 NIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS  310 (548)
Q Consensus       232 ~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp  310 (548)
                      .   .+.+.. +...-...++++.++.|+|...       ....|.++++++ ..  ...++....    .........|
T Consensus        67 ~---~~~~~~~~~~~p~glavd~~~~~ly~~d~-------~~~~I~~~~~~g-~~--~~~~~~~~~----~~P~~iavdp  129 (316)
T 1ijq_A           67 S---YDTVISRDIQAPDGLAVDWIHSNIYWTDS-------VLGTVSVADTKG-VK--RKTLFRENG----SKPRAIVVDP  129 (316)
T ss_dssp             ----CEEEECSSCSCCCEEEEETTTTEEEEEET-------TTTEEEEEETTS-SS--EEEEEECTT----CCEEEEEEET
T ss_pred             c---cEEEEeCCCCCcCEEEEeecCCeEEEEEC-------CCCEEEEEeCCC-Cc--eEEEEECCC----CCcceEEeCC
Confidence            3   344332 2222345577777888876642       245799998863 22  122333221    2344567788


Q ss_pred             CCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCC
Q 008927          311 KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG  390 (548)
Q Consensus       311 DG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~  390 (548)
                      ++..+|.+|. .....|+++++++...+.+...  .+.   |.   ...++.+   +++.||++-  .+...|+++|+++
T Consensus       130 ~~g~ly~~d~-~~~~~I~~~~~dG~~~~~~~~~--~~~---~P---~gla~d~---~~~~lY~~D--~~~~~I~~~d~dg  195 (316)
T 1ijq_A          130 VHGFMYWTDW-GTPAKIKKGGLNGVDIYSLVTE--NIQ---WP---NGITLDL---LSGRLYWVD--SKLHSISSIDVNG  195 (316)
T ss_dssp             TTTEEEEEEC-SSSCEEEEEETTSCCEEEEECS--SCS---CE---EEEEEET---TTTEEEEEE--TTTTEEEEEETTS
T ss_pred             CCCEEEEEcc-CCCCeEEEEcCCCCCeEEEEEC--CCC---Cc---eEEEEec---cCCEEEEEE--CCCCeEEEEecCC
Confidence            6664444554 2235799999865544444321  111   21   1244543   678888753  3455789999987


Q ss_pred             CceEeecC-C--CceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          391 HSLSLLDI-P--FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       391 g~~~~l~~-~--~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      ...+.+.. .  ...-.+++.+++.+|++-.   ....|++++..+++
T Consensus       196 ~~~~~~~~~~~~~~~P~giav~~~~ly~~d~---~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          196 GNRKTILEDEKRLAHPFSLAVFEDKVFWTDI---INEAIFSANRLTGS  240 (316)
T ss_dssp             CSCEEEEECTTTTSSEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred             CceEEEeecCCccCCcEEEEEECCEEEEEEC---CCCeEEEEeCCCCc
Confidence            65555432 1  2223344556777776542   34688999875554

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.40  E-value=2.8e-05  Score=79.57  Aligned_cols=242  Identities=12%  Similarity=0.055  Sum_probs=129.6

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCC-----C-ceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDS-----S-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE  222 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~-----~-~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~  222 (548)
                      .|+++++.++++...++.|.+.++..++.     + ...+...    ...+..+.|+|+|+.++++....        ..
T Consensus        88 ~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~~p~~~~~l~s~~~d--------g~  155 (402)
T 2aq5_A           88 AWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH----TKRVGIVAWHPTAQNVLLSAGCD--------NV  155 (402)
T ss_dssp             EECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC----SSCEEEEEECSSBTTEEEEEETT--------SC
T ss_pred             EeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC----CCeEEEEEECcCCCCEEEEEcCC--------CE
Confidence            56662334445555677777777765200     1 1233322    23466788999995444443321        35


Q ss_pred             EEEEECCCCCccCcEEe--eecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEE-cCCCCCc
Q 008927          223 IVAIALNGQNIQEPKVL--VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-AGFDPTI  299 (548)
Q Consensus       223 l~~idl~~g~~~~~~~L--~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l-~~~~~~~  299 (548)
                      |.++|+.+++.  ...+  ....+.+....|+|||+.|+....        ...|.+.|+.. ++  ....+ .... . 
T Consensus       156 i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------d~~i~iwd~~~-~~--~~~~~~~~~~-~-  220 (402)
T 2aq5_A          156 ILVWDVGTGAA--VLTLGPDVHPDTIYSVDWSRDGALICTSCR--------DKRVRVIEPRK-GT--VVAEKDRPHE-G-  220 (402)
T ss_dssp             EEEEETTTTEE--EEEECTTTCCSCEEEEEECTTSSCEEEEET--------TSEEEEEETTT-TE--EEEEEECSSC-S-
T ss_pred             EEEEECCCCCc--cEEEecCCCCCceEEEEECCCCCEEEEEec--------CCcEEEEeCCC-Cc--eeeeeccCCC-C-
Confidence            88889998861  2333  223445677899999998885542        35799999984 43  22333 2322 1 


Q ss_pred             ccCCcCceECcCCcEEEEE-eCCCCeeeEEEEeccCCee-EeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEe
Q 008927          300 VESPTEPKWSSKGELFFVT-DRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ  377 (548)
Q Consensus       300 ~~~~~~~~wspDG~L~~~s-d~~~g~~~Ly~~d~~~g~~-~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~  377 (548)
                       ..+....|+|||++++.. +. .....|..+|+.+++. ..+...  +...     +.....+.|   +++.|+++...
T Consensus       221 -~~~~~~~~~~~~~~l~~g~~~-~~d~~i~iwd~~~~~~~~~~~~~--~~~~-----~v~~~~~s~---~~~~l~~~g~~  288 (402)
T 2aq5_A          221 -TRPVHAVFVSEGKILTTGFSR-MSERQVALWDTKHLEEPLSLQEL--DTSS-----GVLLPFFDP---DTNIVYLCGKG  288 (402)
T ss_dssp             -SSCCEEEECSTTEEEEEEECT-TCCEEEEEEETTBCSSCSEEEEC--CCCS-----SCEEEEEET---TTTEEEEEETT
T ss_pred             -CcceEEEEcCCCcEEEEeccC-CCCceEEEEcCccccCCceEEec--cCCC-----ceeEEEEcC---CCCEEEEEEcC
Confidence             236778999999955554 22 3335788888766543 111110  0011     112244554   67777655534


Q ss_pred             CCeEEEEEEECCCCc--eEeecC-C-CceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 008927          378 NGRSYLGILDDFGHS--LSLLDI-P-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLK  437 (548)
Q Consensus       378 ~g~~~L~~~dl~~g~--~~~l~~-~-~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~  437 (548)
                      ++  .|.++|+.+++  ...+.. . ...+..+  ++++..++   +.   ...+.++++.+++.+
T Consensus       289 dg--~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~---s~---~~~~~~~~l~~~~~~  346 (402)
T 2aq5_A          289 DS--SIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV---NK---CEIARFYKLHERKCE  346 (402)
T ss_dssp             CS--CEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG---GG---TEEEEEEEEETTEEE
T ss_pred             CC--eEEEEEecCCCcceEeecccccCCcccceEEecccccce---ec---ceeEEEEEcCCCcEE
Confidence            55  45556666665  444432 1 1223333  45554332   11   124555666566544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.40  E-value=0.00016  Score=74.46  Aligned_cols=233  Identities=10%  Similarity=0.020  Sum_probs=135.1

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc-c
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-Q  234 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~-~  234 (548)
                      .|+|.+  ...|.++++++  .+.+.+....    .....+.|++.++.|+++ +..       ...|+++++++... .
T Consensus        85 ~ll~~~--~~~I~~i~l~~--~~~~~~~~~~----~~~~~l~~d~~~~~lyws-D~~-------~~~I~~~~~~g~~~~~  148 (400)
T 3p5b_L           85 YLFFTN--RHEVRKMTLDR--SEYTSLIPNL----RNVVALDTEVASNRIYWS-DLS-------QRMICSTQLDRAHGVS  148 (400)
T ss_dssp             EEEEEE--TTEEEEECTTS--CSCEEEECSC----SCEEEEEEETTTTEEEEE-ETT-------TTEEEEEEC------C
T ss_pred             eeEEec--cceeEEEccCC--cceeEecccc----CcceEEeeeeccCceEEE-ecC-------CCeEEEEEcccCCCCC
Confidence            688887  56799999987  5566554431    234567899988887765 321       24799999987210 0


Q ss_pred             CcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc
Q 008927          235 EPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (548)
Q Consensus       235 ~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~  313 (548)
                      ....+.. +...-...++.+.++.|+|...       ....|.++++++ ..  ...++....    .....++..|.+.
T Consensus       149 ~~~~~~~~~~~~p~glavD~~~~~lY~~d~-------~~~~I~~~~~~g-~~--~~~l~~~~~----~~P~~iavdp~~g  214 (400)
T 3p5b_L          149 SYDTVISRDIQAPDGLAVDWIHSNIYWTDS-------VLGTVSVADTKG-VK--RKTLFRENG----SKPRAIVVDPVHG  214 (400)
T ss_dssp             CCEEEECSSCSCEEEEEEETTTTEEEEEET-------TTTEEEEECTTT-CS--EEEEEECSS----CCEEEEEEETTTT
T ss_pred             cceEEEeCCCCCcccEEEEecCCceEEEEC-------CCCeEEEEeCCC-Cc--eEEEEeCCC----CCcceEEEecccC
Confidence            0334432 3333445577777888877652       245789888863 22  122333221    2344567788666


Q ss_pred             EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce
Q 008927          314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (548)
Q Consensus       314 L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~  393 (548)
                      .+|.+|. .....|+++++++...+.+...  .+   .|..   .+++.+   +++.||++-  .+...|+++|++++..
T Consensus       215 ~ly~td~-~~~~~I~~~~~dG~~~~~~~~~--~l---~~P~---glavd~---~~~~lY~aD--~~~~~I~~~d~dG~~~  280 (400)
T 3p5b_L          215 FMYWTDW-GTPAKIKKGGLNGVDIYSLVTE--NI---QWPN---GITLDL---LSGRLYWVD--SKLHSISSIDVNGGNR  280 (400)
T ss_dssp             EEEEEEC-SSSCCEEEEETTSCSCEEEECS--SC---SCEE---EEEEET---TTTEEEEEE--TTTTEEEEEETTSCCC
T ss_pred             eEEEEeC-CCCCEEEEEeCCCCccEEEEEC--CC---CceE---EEEEEe---CCCEEEEEE--CCCCEEEEEeCCCCcc
Confidence            4445554 2235799999876655555421  11   2211   244543   678888763  3456799999987766


Q ss_pred             EeecCC---CceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          394 SLLDIP---FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       394 ~~l~~~---~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      +.+...   ...-.+++.+++.+|++-.   ....|++++..+|+
T Consensus       281 ~~~~~~~~~l~~P~gl~v~~~~lywtd~---~~~~V~~~~~~~G~  322 (400)
T 3p5b_L          281 KTILEDEKRLAHPFSLAVFEDKVFWTDI---INEAIFSANRLTGS  322 (400)
T ss_dssp             EEEEECSSTTSSEEEEEEETTEEEEEES---SSCSEEEEESSSCC
T ss_pred             EEEEeCCCCCCCCEEEEEeCCEEEEecC---CCCeEEEEEcCCCC
Confidence            555321   2222345667787777652   34578888865554

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.38  E-value=1.1e-05  Score=82.46  Aligned_cols=253  Identities=8%  Similarity=0.107  Sum_probs=135.8

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCC--CCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCC
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGD--EPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ  165 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~--~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~  165 (548)
                      ..+..+.++| |+.++.-.    ++|...||.......+  ....+......+.       .-.|+++++.++++...++
T Consensus        68 ~~v~~~~~s~~~~~l~~~~----~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~-------~~~~~~~~~~~l~s~~~dg  136 (416)
T 2pm9_A           68 SKFNDLDWSHNNKIIAGAL----DNGSLELYSTNEANNAINSMARFSNHSSSVK-------TVKFNAKQDNVLASGGNNG  136 (416)
T ss_dssp             SCEEEEEECSSSSCEEEEE----SSSCEEEECCSSTTSCCCEEEECCCSSSCCC-------EEEECSSSTTBEEEECSSS
T ss_pred             CceEEEEECCCCCeEEEEc----cCCeEEEeecccccccccchhhccCCccceE-------EEEEcCCCCCEEEEEcCCC
Confidence            4577889999 76665543    2577777766441101  1122222211111       1256666555666666778


Q ss_pred             eEEEEeCCCCCCC-------ceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE
Q 008927          166 RLYKHSIDSKDSS-------PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV  238 (548)
Q Consensus       166 ~Ly~~~~~~~~~~-------~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~  238 (548)
                      .|++.++..  ++       +..+.... ........+.|+|++..++++....        ..|.++|+.+++   ...
T Consensus       137 ~v~iwd~~~--~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~iwd~~~~~---~~~  202 (416)
T 2pm9_A          137 EIFIWDMNK--CTESPSNYTPLTPGQSM-SSVDEVISLAWNQSLAHVFASAGSS--------NFASIWDLKAKK---EVI  202 (416)
T ss_dssp             CEEBCBTTT--TSSCTTTCCCBCCCCSC-CSSCCCCEEEECSSCTTEEEEESSS--------SCEEEEETTTTE---EEE
T ss_pred             eEEEEECCC--Ccccccccccccccccc-CCCCCeeEEEeCCCCCcEEEEEcCC--------CCEEEEECCCCC---cce
Confidence            898889876  32       22221111 0123456788999954444433221        358889999876   333


Q ss_pred             eeec-------CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEc-CCCCCcccCCcCceECc
Q 008927          239 LVSG-------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA-GFDPTIVESPTEPKWSS  310 (548)
Q Consensus       239 L~~~-------~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~-~~~~~~~~~~~~~~wsp  310 (548)
                      ....       ........|+|||+.++.+.....    ....|++.|+.....  ....+. +..    ..+..+.|+|
T Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----~~~~i~~~d~~~~~~--~~~~~~~~~~----~~v~~~~~s~  272 (416)
T 2pm9_A          203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD----NDPSILIWDLRNANT--PLQTLNQGHQ----KGILSLDWCH  272 (416)
T ss_dssp             EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS----SSCCCCEEETTSTTS--CSBCCCSCCS----SCEEEEEECS
T ss_pred             EEeccccccccCCceEEEEECCCCCCEEEEEECCC----CCceEEEEeCCCCCC--CcEEeecCcc----CceeEEEeCC
Confidence            2222       344677899999864443442211    012688889875322  122333 322    4577889999


Q ss_pred             -CCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECC
Q 008927          311 -KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF  389 (548)
Q Consensus       311 -DG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~  389 (548)
                       |+++++.... +|  .|.++|+.+++........     ..+   .....|.|   ++..++++...++.  |.++|+.
T Consensus       273 ~~~~~l~s~~~-dg--~v~~wd~~~~~~~~~~~~~-----~~~---v~~~~~s~---~~~~~l~s~~~d~~--i~iw~~~  336 (416)
T 2pm9_A          273 QDEHLLLSSGR-DN--TVLLWNPESAEQLSQFPAR-----GNW---CFKTKFAP---EAPDLFACASFDNK--IEVQTLQ  336 (416)
T ss_dssp             SCSSCEEEEES-SS--EEEEECSSSCCEEEEEECS-----SSC---CCCEEECT---TCTTEEEECCSSSE--EEEEESC
T ss_pred             CCCCeEEEEeC-CC--CEEEeeCCCCccceeecCC-----CCc---eEEEEECC---CCCCEEEEEecCCc--EEEEEcc
Confidence             7885555444 44  4777787777643322210     111   12245654   55355555555554  5555665


Q ss_pred             CCc
Q 008927          390 GHS  392 (548)
Q Consensus       390 ~g~  392 (548)
                      +++
T Consensus       337 ~~~  339 (416)
T 2pm9_A          337 NLT  339 (416)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.37  E-value=0.00017  Score=74.21  Aligned_cols=240  Identities=11%  Similarity=0.043  Sum_probs=131.0

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      .|+|++.. +++...++.|.+.++..  ++. +.+...    ...+....|+|+|+.|+....+         ..|.++|
T Consensus       115 ~~~p~~~~-l~s~s~Dg~i~vwd~~~--~~~~~~l~~h----~~~V~~v~~~~~~~~l~sgs~D---------~~i~iwd  178 (410)
T 1vyh_C          115 IFHPVFSV-MVSASEDATIKVWDYET--GDFERTLKGH----TDSVQDISFDHSGKLLASCSAD---------MTIKLWD  178 (410)
T ss_dssp             EECSSSSE-EEEEESSSCEEEEETTT--CCCCEEECCC----SSCEEEEEECTTSSEEEEEETT---------SCCCEEE
T ss_pred             EEcCCCCE-EEEEeCCCeEEEEECCC--CcEEEEEecc----CCcEEEEEEcCCCCEEEEEeCC---------CeEEEEe
Confidence            45555554 44444677888888876  443 444433    2245677899999977665433         2466778


Q ss_pred             CCCCCccCcEE-eeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCc
Q 008927          228 LNGQNIQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (548)
Q Consensus       228 l~~g~~~~~~~-L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~  306 (548)
                      +.+++   ... +......+....|+|||+.|+-.+.        ...|.+.|+.. +.  ....+.+..    ..+...
T Consensus       179 ~~~~~---~~~~~~~h~~~V~~v~~~p~~~~l~s~s~--------D~~i~~wd~~~-~~--~~~~~~~h~----~~v~~~  240 (410)
T 1vyh_C          179 FQGFE---CIRTMHGHDHNVSSVSIMPNGDHIVSASR--------DKTIKMWEVQT-GY--CVKTFTGHR----EWVRMV  240 (410)
T ss_dssp             TTSSC---EEECCCCCSSCEEEEEECSSSSEEEEEET--------TSEEEEEETTT-CC--EEEEEECCS----SCEEEE
T ss_pred             CCCCc---eeEEEcCCCCCEEEEEEeCCCCEEEEEeC--------CCeEEEEECCC-Cc--EEEEEeCCC----ccEEEE
Confidence            88876   332 3333445677899999998874442        35688889874 43  233444433    456778


Q ss_pred             eECcCCcEEEEEeCCCCeeeEEEEeccCCeeEe-ecccccccCCCcccccCcc-----------eeeeeecCCCCEEEEE
Q 008927          307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINS-----------YEIIQSHGEKNLIACS  374 (548)
Q Consensus       307 ~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~-l~~~~~d~~~p~w~~~~~~-----------~~~~~~~~d~~~l~~~  374 (548)
                      .|+|||++++.... ++.  |..+|+.+++... +......+....|......           ....    ..+.++++
T Consensus       241 ~~~~~g~~l~s~s~-D~~--v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~l~s  313 (410)
T 1vyh_C          241 RPNQDGTLIASCSN-DQT--VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG----KPGPFLLS  313 (410)
T ss_dssp             EECTTSSEEEEEET-TSC--EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----------CCEEEE
T ss_pred             EECCCCCEEEEEcC-CCe--EEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccC----CCCCEEEE
Confidence            89999996666544 443  5555666665432 2111100000011110000           0000    11334455


Q ss_pred             EEeCCeEEEEEEECCCCceE-eecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          375 YRQNGRSYLGILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       375 ~~~~g~~~L~~~dl~~g~~~-~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      ...++.  |.++|+.+++.. .+......+..+  +++++.|+ .++.   -..|.++|+.+++
T Consensus       314 gs~D~~--i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~-s~s~---D~~i~vwd~~~~~  371 (410)
T 1vyh_C          314 GSRDKT--IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCAD---DKTLRVWDYKNKR  371 (410)
T ss_dssp             EETTSE--EEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEE-EEET---TTEEEEECCTTSC
T ss_pred             EeCCCe--EEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEE-EEeC---CCeEEEEECCCCc
Confidence            555554  666788877543 333333334444  56666554 4432   2578888876654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.37  E-value=5.1e-05  Score=75.92  Aligned_cols=233  Identities=11%  Similarity=0.017  Sum_probs=126.3

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCC---ceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSS---PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~---~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      +|++++..|+.. ..++.|++.++++  ++   ...+...    ...+..+.|+|||+.|+....+         ..|.+
T Consensus        15 ~~s~~~~~l~~~-~~d~~v~i~~~~~--~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~~~~~d---------g~i~v   78 (372)
T 1k8k_C           15 AWNKDRTQIAIC-PNNHEVHIYEKSG--NKWVQVHELKEH----NGQVTGVDWAPDSNRIVTCGTD---------RNAYV   78 (372)
T ss_dssp             EECTTSSEEEEE-CSSSEEEEEEEET--TEEEEEEEEECC----SSCEEEEEEETTTTEEEEEETT---------SCEEE
T ss_pred             EECCCCCEEEEE-eCCCEEEEEeCCC--CcEEeeeeecCC----CCcccEEEEeCCCCEEEEEcCC---------CeEEE
Confidence            466666666665 3467788888876  43   3344332    2346678899999988775433         24777


Q ss_pred             EECCCCCccCcEEe---eecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccC
Q 008927          226 IALNGQNIQEPKVL---VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES  302 (548)
Q Consensus       226 idl~~g~~~~~~~L---~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~  302 (548)
                      +|+.+++   ....   ...........|+|||+.|+....        ...|.+.+++..........+.... .  ..
T Consensus        79 wd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------d~~v~i~d~~~~~~~~~~~~~~~~~-~--~~  144 (372)
T 1k8k_C           79 WTLKGRT---WKPTLVILRINRAARCVRWAPNEKKFAVGSG--------SRVISICYFEQENDWWVCKHIKKPI-R--ST  144 (372)
T ss_dssp             EEEETTE---EEEEEECCCCSSCEEEEEECTTSSEEEEEET--------TSSEEEEEEETTTTEEEEEEECTTC-C--SC
T ss_pred             EECCCCe---eeeeEEeecCCCceeEEEECCCCCEEEEEeC--------CCEEEEEEecCCCcceeeeeeeccc-C--CC
Confidence            7877765   2222   223344667899999998886552        2457777777433211122222211 1  45


Q ss_pred             CcCceECcCCcEEEEEeCCCCeeeEEEEecc------------------CCeeEeecccccccCCCcccccCcceeeeee
Q 008927          303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIES------------------NNEVLAIYSLDAEFSRPLWVFGINSYEIIQS  364 (548)
Q Consensus       303 ~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~------------------~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~  364 (548)
                      +....|+|||++++.... +|.  |+.+|+.                  .++.......     ...   ......+.| 
T Consensus       145 i~~~~~~~~~~~l~~~~~-dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~v~~~~~~~-  212 (372)
T 1k8k_C          145 VLSLDWHPNSVLLAAGSC-DFK--CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-----SCG---WVHGVCFSA-  212 (372)
T ss_dssp             EEEEEECTTSSEEEEEET-TSC--EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-----CSS---CEEEEEECS-
T ss_pred             eeEEEEcCCCCEEEEEcC-CCC--EEEEEcccccccccccccccccccchhhheEecCC-----CCC---eEEEEEECC-
Confidence            778899999995555544 454  4445532                  2222211110     001   112244553 


Q ss_pred             cCCCCEEEEEEEeCCeEEEEEEECCCCceE-eecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCC
Q 008927          365 HGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDD  433 (548)
Q Consensus       365 ~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~  433 (548)
                        +++.|+ +...++.  |.++|+.+++.. .+......+..+  ++++. +++.+ . .  ..|+++++.+
T Consensus       213 --~~~~l~-~~~~d~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~-d--~~i~i~~~~~  274 (372)
T 1k8k_C          213 --NGSRVA-WVSHDST--VCLADADKKMAVATLASETLPLLAVTFITESS-LVAAG-H-D--CFPVLFTYDS  274 (372)
T ss_dssp             --SSSEEE-EEETTTE--EEEEEGGGTTEEEEEECSSCCEEEEEEEETTE-EEEEE-T-T--SSCEEEEEET
T ss_pred             --CCCEEE-EEeCCCE--EEEEECCCCceeEEEccCCCCeEEEEEecCCC-EEEEE-e-C--CeEEEEEccC
Confidence              555554 4445554  666787776543 444333334444  45554 44444 2 2  4455666555

>3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis}

Probab=98.37  E-value=3.5e-07  Score=94.34  Aligned_cols=73  Identities=16%  Similarity=0.134  Sum_probs=57.6

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccccc------------CccC----hHHHHHHhc
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR------------GILN----LSIQYWTSR  523 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~------------~~~~----~~~Q~~asr  523 (548)
                      ..|.++|++. ||.+++++||.|.+  .    .+++|+||++||+......            ..|.    ...++|+++
T Consensus        91 ~~e~v~~~~~-~g~~l~~~l~~P~~--~----~~~~P~Vv~~HG~g~~~~~~~~~~g~~~~~~~~y~~~~~~~a~~la~~  163 (398)
T 3nuz_A           91 RLEKWEFYPL-PKCVSTFLVLIPDN--I----NKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKE  163 (398)
T ss_dssp             EEEEEEECCS-TTBCEEEEEEEESS--C----CSCEEEEEEECCTTCCHHHHHTCCCSSSTTCCSTTCTTTCHHHHHHTT
T ss_pred             EEEEEEEEcC-CCcEEEEEEEeCCC--C----CCCccEEEEEcCCCCCcccccccccccccccccccchHHHHHHHHHHC
Confidence            3577899998 99999999999964  1    3578999999998765431            1222    577899999


Q ss_pred             CcEEEEeCCCCCCCCC
Q 008927          524 GWAFVDVNYGGSTGLS  539 (548)
Q Consensus       524 GyaVl~~NyRGStGyG  539 (548)
                      ||+|+.+|+||....+
T Consensus       164 Gy~Vl~~D~rG~G~s~  179 (398)
T 3nuz_A          164 GYIAVAVDNPAAGEAS  179 (398)
T ss_dssp             TCEEEEECCTTSGGGC
T ss_pred             CCEEEEecCCCCCccc
Confidence            9999999999976654

>2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A

Probab=98.37  E-value=3.2e-07  Score=100.72  Aligned_cols=77  Identities=18%  Similarity=0.214  Sum_probs=57.1

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccc-cccCccC--------hHH-HHHHhcCcEEEEe
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILN--------LSI-QYWTSRGWAFVDV  530 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~-~~~~~~~--------~~~-Q~~asrGyaVl~~  530 (548)
                      .|.+++++. ||.+|++++|.|++       .+++|+||.+||--.. .....+.        ... |+|+++||+|+.+
T Consensus        37 ~~~v~i~~~-DG~~L~~~l~~P~~-------~~~~PvIl~~hpyg~~~~~~~~~~~~~~~~~~~~~~~~la~~GyaVv~~  108 (652)
T 2b9v_A           37 KREVMVPMR-DGVKLYTVIVIPKN-------ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQ  108 (652)
T ss_dssp             EEEEEEECT-TSCEEEEEEEEETT-------CCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEE
T ss_pred             EEEEEEECC-CCcEEEEEEEecCC-------CCCccEEEEECCCCCCcccccccccccccccccchHHHHHhCCCEEEEE
Confidence            477899998 99999999999964       2578999999852111 0001111        123 9999999999999


Q ss_pred             CCCCCCCCChhhhhc
Q 008927          531 NYGGSTGLSSVPSTS  545 (548)
Q Consensus       531 NyRGStGyG~~f~~a  545 (548)
                      |+||+.++|..|...
T Consensus       109 D~RG~g~S~g~~~~~  123 (652)
T 2b9v_A          109 DIRGKYGSQGDYVMT  123 (652)
T ss_dssp             ECTTSTTCCSCCCTT
T ss_pred             ecCcCCCCCCccccc
Confidence            999999998877543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.36  E-value=0.00013  Score=72.48  Aligned_cols=210  Identities=10%  Similarity=0.040  Sum_probs=115.5

Q ss_pred             CccCceEEcC-C--CcEEEEEecCCCCCceEEEEcCCCCCC-CCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC
Q 008927           89 KRLGGTAVDG-H--GRLIWLESRPTEAGRGVLVKEPAKAGD-EPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD  164 (548)
Q Consensus        89 ~~~~~~~~sp-g--~~i~~~~~~~~e~gr~~l~~~~~~~~~-~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~  164 (548)
                      ..+..+.++| +  +.+++....   +|...+|.....  . ....+......+.. +.-..+.+|++++..|+.. ..+
T Consensus        66 ~~v~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~--~~~~~~~~~~~~~v~~-~~~~~~~~~s~~~~~l~~~-~~d  138 (357)
T 3i2n_A           66 KPIKCGTFGATSLQQRYLATGDF---GGNLHIWNLEAP--EMPVYSVKGHKEIINA-IDGIGGLGIGEGAPEIVTG-SRD  138 (357)
T ss_dssp             SCEEEEECTTCCTTTCCEEEEET---TSCEEEECTTSC--SSCSEEECCCSSCEEE-EEEESGGGCC-CCCEEEEE-ETT
T ss_pred             CcEEEEEEcCCCCCCceEEEecC---CCeEEEEeCCCC--CccEEEEEecccceEE-EeeccccccCCCccEEEEE-eCC
Confidence            4566777887 4  455444432   577777765433  2 22333322211111 1000111455666666554 457


Q ss_pred             CeEEEEeCCCCCCCceecCCCCCCCCceeccee----eCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee
Q 008927          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGI----FDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV  240 (548)
Q Consensus       165 ~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~----~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~  240 (548)
                      +.|.+.++..+......+...............    |+|+++.|+....+         ..|.++|+.+++   .....
T Consensus       139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~---~~~~~  206 (357)
T 3i2n_A          139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN---------GDIKLFDLRNMA---LRWET  206 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT---------SEEEEEETTTTE---EEEEE
T ss_pred             CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC---------CeEEEEECccCc---eeeec
Confidence            788888887621123444432110011233333    88999987775432         378999999987   55555


Q ss_pred             ecCCceeeeEECC---CCCEEEEEEecCCCCCCCCceEEEEEecCCCc-eeeeE--EEcCCCCCcccCCcCceECcCCc-
Q 008927          241 SGSDFYAFPRMDP---RGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRV--CVAGFDPTIVESPTEPKWSSKGE-  313 (548)
Q Consensus       241 ~~~~~~~~p~~SP---DGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~-~~~~~--~l~~~~~~~~~~~~~~~wspDG~-  313 (548)
                      ..........|+|   +|+.|+....        ...|++.++.. ++ .....  .+.+..    ..+....|+|||+ 
T Consensus       207 ~~~~~v~~~~~~~~~~~~~~l~~~~~--------dg~i~i~d~~~-~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~  273 (357)
T 3i2n_A          207 NIKNGVCSLEFDRKDISMNKLVATSL--------EGKFHVFDMRT-QHPTKGFASVSEKAHK----STVWQVRHLPQNRE  273 (357)
T ss_dssp             ECSSCEEEEEESCSSSSCCEEEEEES--------TTEEEEEEEEE-EETTTEEEEEEEECCS----SCEEEEEEETTEEE
T ss_pred             CCCCceEEEEcCCCCCCCCEEEEECC--------CCeEEEEeCcC-CCcccceeeeccCCCc----CCEEEEEECCCCCc
Confidence            4455677889999   9998875441        35788888874 32 11111  112332    4677889999999 


Q ss_pred             EEEEEeCCCCeeeEEEEe
Q 008927          314 LFFVTDRKNGFWNLHKWI  331 (548)
Q Consensus       314 L~~~sd~~~g~~~Ly~~d  331 (548)
                      +++.... +|.-.||.+.
T Consensus       274 ~l~~~~~-dg~i~iwd~~  290 (357)
T 3i2n_A          274 LFLTAGG-AGGLHLWKYE  290 (357)
T ss_dssp             EEEEEET-TSEEEEEEEE
T ss_pred             EEEEEeC-CCcEEEeecC
Confidence            6776665 6655555443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.36  E-value=0.00013  Score=74.49  Aligned_cols=200  Identities=11%  Similarity=0.013  Sum_probs=107.6

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE-eeecCCceeeeEECCCCCEEEEEEecCCCCCCC
Q 008927          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (548)
Q Consensus       193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~-L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~  271 (548)
                      +..+.|+|||+.|+....+         ..|.++|+.+++   ... +......+....|+|||++|+-.+.        
T Consensus       126 v~~v~~s~dg~~l~s~~~d---------~~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~p~~~~l~s~s~--------  185 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAED---------RLIRIWDIENRK---IVMILQGHEQDIYSLDYFPSGDKLVSGSG--------  185 (393)
T ss_dssp             EEEEEECTTSSEEEEEETT---------SCEEEEETTTTE---EEEEECCCSSCEEEEEECTTSSEEEEEET--------
T ss_pred             EEEEEECCCCCEEEEEcCC---------CeEEEEECCCCc---EEEEEccCCCCEEEEEEcCCCCEEEEecC--------
Confidence            4567899999988775433         358888998886   433 3333444677899999998874442        


Q ss_pred             CceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc-CCcEEEEEeCCCCeeeEEEEeccCCeeE-eeccccc-ccC
Q 008927          272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDA-EFS  348 (548)
Q Consensus       272 ~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp-DG~L~~~sd~~~g~~~Ly~~d~~~g~~~-~l~~~~~-d~~  348 (548)
                      ...|.+.|+.. ++.  ...+...     ..+....|+| ||++++.... ++.  |..+|+.+++.. .+..... ..+
T Consensus       186 d~~v~iwd~~~-~~~--~~~~~~~-----~~v~~~~~~~~~~~~l~~~s~-d~~--v~iwd~~~~~~~~~~~~~~~~~~~  254 (393)
T 1erj_A          186 DRTVRIWDLRT-GQC--SLTLSIE-----DGVTTVAVSPGDGKYIAAGSL-DRA--VRVWDSETGFLVERLDSENESGTG  254 (393)
T ss_dssp             TSEEEEEETTT-TEE--EEEEECS-----SCEEEEEECSTTCCEEEEEET-TSC--EEEEETTTCCEEEEEC------CC
T ss_pred             CCcEEEEECCC-Cee--EEEEEcC-----CCcEEEEEECCCCCEEEEEcC-CCc--EEEEECCCCcEEEeecccccCCCC
Confidence            34688889874 532  2223322     3456788999 7886555544 443  556677776643 2321100 001


Q ss_pred             CCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-------------eecCCCceeEee--eecCCEE
Q 008927          349 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-------------LLDIPFTDIDNI--TLGNDCL  413 (548)
Q Consensus       349 ~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-------------~l~~~~~~~~~~--s~d~~~l  413 (548)
                      ....   .....|.|   +++.| ++...++.-.|  +|+.++...             .+......+..+  ++++..|
T Consensus       255 h~~~---v~~v~~~~---~g~~l-~s~s~d~~v~~--wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  325 (393)
T 1erj_A          255 HKDS---VYSVVFTR---DGQSV-VSGSLDRSVKL--WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI  325 (393)
T ss_dssp             CSSC---EEEEEECT---TSSEE-EEEETTSEEEE--EEC---------------CEEEEEECCSSCEEEEEECGGGCEE
T ss_pred             CCCC---EEEEEECC---CCCEE-EEEeCCCEEEE--EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEE
Confidence            1111   12245553   55554 45555665444  455433210             111111123333  4556544


Q ss_pred             EEEEecCCCCCeEEEEEcCCCce
Q 008927          414 FVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       414 ~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      + .++.   -..|+++|+.+++.
T Consensus       326 ~-sgs~---D~~v~iwd~~~~~~  344 (393)
T 1erj_A          326 L-SGSK---DRGVLFWDKKSGNP  344 (393)
T ss_dssp             E-EEET---TSEEEEEETTTCCE
T ss_pred             E-EEeC---CCeEEEEECCCCeE
Confidence            3 3332   25788889877653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.36  E-value=0.00012  Score=73.16  Aligned_cols=248  Identities=9%  Similarity=0.042  Sum_probs=133.6

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCC-cccCCCCCCccccceeeCCeeeEEEC-CEEEEEeCCCC
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEP-SDITPKEYAVRTTAQEYGGGAFRIFG-DTVIFSNYKDQ  165 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~-~~lt~~~~~~r~~v~~ygg~~~~~~~-~~i~F~~~~~~  165 (548)
                      ..+..+.++| |+.++...    .+|...||...... ... +.+......+.       .-.|+++. +.++++...++
T Consensus        12 ~~v~~~~~s~~~~~l~~~~----~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~-------~~~~~~~~~~~~l~s~~~dg   79 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCS----SDKTIKIFEVEGET-HKLIDTLTGHEGPVW-------RVDWAHPKFGTILASCSYDG   79 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEE----TTSCEEEEEEETTE-EEEEEEECCCSSCEE-------EEEECCGGGCSEEEEEETTS
T ss_pred             ccEEEEEEcCCCCEEEEEE----CCCcEEEEecCCCc-ceeeeEecCCCCcEE-------EEEeCCCCCCCEEEEeccCC
Confidence            5577888999 66655432    25777888764321 111 22222211111       12455441 33444555677


Q ss_pred             eEEEEeCCCCCCCc---eecCCCCCCCCceecceeeCCC--CCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee
Q 008927          166 RLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV  240 (548)
Q Consensus       166 ~Ly~~~~~~~~~~~---~~lT~~~~~~~~~~~~~~~SpD--G~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~  240 (548)
                      .|.+.++..  ++.   ..+...    ...+..+.|+|+  ++.|+....+         ..|.++|+.++.......+.
T Consensus        80 ~v~iwd~~~--~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~~  144 (379)
T 3jrp_A           80 KVLIWKEEN--GRWSQIAVHAVH----SASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKENGTTSPIIID  144 (379)
T ss_dssp             CEEEEEEET--TEEEEEEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCTTSCCCEEEEE
T ss_pred             EEEEEEcCC--CceeEeeeecCC----CcceEEEEeCCCCCCCEEEEecCC---------CcEEEEecCCCCceeeEEec
Confidence            777777765  432   223222    234667889999  8887776433         36888898877411122333


Q ss_pred             ecCCceeeeEECC-------------CCCEEEEEEecCCCCCCCCceEEEEEecCCCce-eeeEEEcCCCCCcccCCcCc
Q 008927          241 SGSDFYAFPRMDP-------------RGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVESPTEP  306 (548)
Q Consensus       241 ~~~~~~~~p~~SP-------------DGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~-~~~~~l~~~~~~~~~~~~~~  306 (548)
                      ..........|+|             |++.|+....        ...|++.++..+... .....+.+..    ..+..+
T Consensus       145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------dg~i~i~d~~~~~~~~~~~~~~~~h~----~~v~~~  212 (379)
T 3jrp_A          145 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA--------DNLVKIWKYNSDAQTYVLESTLEGHS----DWVRDV  212 (379)
T ss_dssp             CCTTCEEEEEECCCC----------CTTCEEEEEET--------TSCEEEEEEETTTTEEEEEEEECCCS----SCEEEE
T ss_pred             CCCCceEEEEEcCccccccccccCCCCCCEEEEEeC--------CCeEEEEEecCCCcceeeEEEEeccc----CcEeEE
Confidence            4444567889999             6888875542        346888888743321 1122333332    457789


Q ss_pred             eECcC---CcEEEEEeCCCCeeeEEEEeccCCe---eEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCe
Q 008927          307 KWSSK---GELFFVTDRKNGFWNLHKWIESNNE---VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR  380 (548)
Q Consensus       307 ~wspD---G~L~~~sd~~~g~~~Ly~~d~~~g~---~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~  380 (548)
                      .|+||   |++++.... +|.  |..+++.+++   ...+... .....+     .....|.|   +++.|+ +...+|.
T Consensus       213 ~~sp~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~-~~~~~~-----v~~~~~s~---~g~~l~-~~~~dg~  279 (379)
T 3jrp_A          213 AWSPTVLLRSYLASVSQ-DRT--CIIWTQDNEQGPWKKTLLKE-EKFPDV-----LWRASWSL---SGNVLA-LSGGDNK  279 (379)
T ss_dssp             EECCCCSSSEEEEEEET-TSC--EEEEEESSTTSCCEEEESSS-SCCSSC-----EEEEEECS---SSCCEE-EEESSSS
T ss_pred             EECCCCCCCCeEEEEeC-CCE--EEEEeCCCCCccceeeeecc-ccCCCc-----EEEEEEcC---CCCEEE-EecCCCc
Confidence            99999   776666555 554  4445554543   2222211 011111     12245654   666554 4455777


Q ss_pred             EEEEEEEC
Q 008927          381 SYLGILDD  388 (548)
Q Consensus       381 ~~L~~~dl  388 (548)
                      -++|.++.
T Consensus       280 i~iw~~~~  287 (379)
T 3jrp_A          280 VTLWKENL  287 (379)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEeCCC
Confidence            66766653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.35  E-value=0.00035  Score=68.40  Aligned_cols=247  Identities=12%  Similarity=0.072  Sum_probs=134.5

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L  167 (548)
                      ..+..+.++| |..++--.    .+|...||.....  ...+.+......++       ...|+++++.|+-. ..++.|
T Consensus        14 ~~V~~~~fsp~~~~l~s~~----~dg~v~lWd~~~~--~~~~~~~~~~~~v~-------~~~~~~~~~~l~s~-s~d~~i   79 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWVLTTL----YSGRVELWNYETQ--VEVRSIQVTETPVR-------AGKFIARKNWIIVG-SDDFRI   79 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEE----TTSEEEEEETTTT--EEEEEEECCSSCEE-------EEEEEGGGTEEEEE-ETTSEE
T ss_pred             CceEEEEECCCCCEEEEEc----CCCcEEEEECCCC--ceeEEeeccCCcEE-------EEEEeCCCCEEEEE-CCCCEE
Confidence            4577889999 66554332    2577778866432  12233322211111       13566777665544 356778


Q ss_pred             EEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE-eeecCCc
Q 008927          168 YKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV-LVSGSDF  245 (548)
Q Consensus       168 y~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~-L~~~~~~  245 (548)
                      .+.++..  ++. ..+...    ...+....|+|+++.|+....+         ..|.++|+.++..  ... +......
T Consensus        80 ~vwd~~~--~~~~~~~~~h----~~~v~~~~~~~~~~~l~sgs~D---------~~v~lWd~~~~~~--~~~~~~~h~~~  142 (304)
T 2ynn_A           80 RVFNYNT--GEKVVDFEAH----PDYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENNWA--LEQTFEGHEHF  142 (304)
T ss_dssp             EEEETTT--CCEEEEEECC----SSCEEEEEECSSSSEEEEEETT---------SCEEEEEGGGTTE--EEEEECCCCSC
T ss_pred             EEEECCC--CcEEEEEeCC----CCcEEEEEEcCCCCEEEEECCC---------CeEEEEECCCCcc--hhhhhcccCCc
Confidence            8888876  443 334332    2345677899999987665433         2577788887641  222 3333445


Q ss_pred             eeeeEECC-CCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc--CCcEEEEEeCCC
Q 008927          246 YAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS--KGELFFVTDRKN  322 (548)
Q Consensus       246 ~~~p~~SP-DGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp--DG~L~~~sd~~~  322 (548)
                      +....|+| |++.|+-...        ...|.+.|+.. +.. ......+..    ..+....|+|  |+++++.... +
T Consensus       143 v~~v~~~p~~~~~l~sgs~--------D~~v~iwd~~~-~~~-~~~~~~~~~----~~v~~~~~~~~~~~~~l~s~s~-D  207 (304)
T 2ynn_A          143 VMCVAFNPKDPSTFASGCL--------DRTVKVWSLGQ-STP-NFTLTTGQE----RGVNYVDYYPLPDKPYMITASD-D  207 (304)
T ss_dssp             EEEEEECTTCTTEEEEEET--------TSEEEEEETTC-SSC-SEEEECCCT----TCEEEEEECCSTTCCEEEEEET-T
T ss_pred             EEEEEECCCCCCEEEEEeC--------CCeEEEEECCC-CCc-cceeccCCc----CcEEEEEEEEcCCCCEEEEEcC-C
Confidence            67778999 6777763331        34688888864 321 122222222    3345566766  6665555444 4


Q ss_pred             CeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eec
Q 008927          323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLD  397 (548)
Q Consensus       323 g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~  397 (548)
                      +  .|..+|+.+++.......     ....   .....+.|   ++. ++++...++.  |.+.|+.+++.. .+.
T Consensus       208 ~--~i~iWd~~~~~~~~~~~~-----h~~~---v~~~~~~p---~~~-~l~s~s~Dg~--i~iWd~~~~~~~~~~~  267 (304)
T 2ynn_A          208 L--TIKIWDYQTKSCVATLEG-----HMSN---VSFAVFHP---TLP-IIISGSEDGT--LKIWNSSTYKVEKTLN  267 (304)
T ss_dssp             S--EEEEEETTTTEEEEEEEC-----CSSC---EEEEEECS---SSS-EEEEEETTSC--EEEEETTTCCEEEEEC
T ss_pred             C--eEEEEeCCCCccceeeCC-----CCCC---EEEEEECC---CCC-EEEEEcCCCe--EEEEECCCCceeeecc
Confidence            4  466677777764332211     0011   11234543   555 4456656665  455688777654 444

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.35  E-value=3e-05  Score=77.98  Aligned_cols=243  Identities=7%  Similarity=-0.030  Sum_probs=132.5

Q ss_pred             ccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEEE
Q 008927           90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK  169 (548)
Q Consensus        90 ~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~  169 (548)
                      .+..+.++|.++++ ...   .+|.-.||.....  .....+......-...|.   .-+|++++..|+-. ..++.|.+
T Consensus        84 ~v~~~~~s~d~~l~-~~s---~dg~v~lWd~~~~--~~~~~~~~~~~~H~~~V~---~v~~spdg~~l~sg-s~d~~i~i  153 (344)
T 4gqb_B           84 GVADLTWVGERGIL-VAS---DSGAVELWELDEN--ETLIVSKFCKYEHDDIVS---TVSVLSSGTQAVSG-SKDICIKV  153 (344)
T ss_dssp             CEEEEEEETTTEEE-EEE---TTSEEEEEEECTT--SSCEEEEEEEECCSSCEE---EEEECTTSSEEEEE-ETTSCEEE
T ss_pred             CEEEEEEeCCCeEE-EEE---CCCEEEEEeccCC--CceeEeeccccCCCCCEE---EEEECCCCCEEEEE-eCCCeEEE
Confidence            35677888644443 322   2577778876443  112111100000011111   12566677666544 45677888


Q ss_pred             EeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee-cC-Cce
Q 008927          170 HSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GS-DFY  246 (548)
Q Consensus       170 ~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~-~~-~~~  246 (548)
                      .++..  ++. +.+...    ...+....|+|++..+++.....        ..|.++|+.+++.  ...+.. .. ...
T Consensus       154 wd~~~--~~~~~~~~~h----~~~V~~~~~~~~~~~~l~s~s~D--------~~v~iwd~~~~~~--~~~~~~~~~~~~~  217 (344)
T 4gqb_B          154 WDLAQ--QVVLSSYRAH----AAQVTCVAASPHKDSVFLSCSED--------NRILLWDTRCPKP--ASQIGCSAPGYLP  217 (344)
T ss_dssp             EETTT--TEEEEEECCC----SSCEEEEEECSSCTTEEEEEETT--------SCEEEEETTSSSC--EEECC----CCCE
T ss_pred             EECCC--CcEEEEEcCc----CCceEEEEecCCCCCceeeeccc--------cccccccccccce--eeeeecceeeccc
Confidence            88876  443 333332    23455678999997655543321        3578889998872  233321 12 234


Q ss_pred             eeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCee
Q 008927          247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW  325 (548)
Q Consensus       247 ~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~  325 (548)
                      ....|+|++.+++.....       ...|.+.|+.. ++  ....+.+..    ..+....|+|||. +++.... ++  
T Consensus       218 ~~~~~~p~~~~~l~sg~~-------dg~v~~wd~~~-~~--~~~~~~~h~----~~v~~v~fsp~g~~~lasgs~-D~--  280 (344)
T 4gqb_B          218 TSLAWHPQQSEVFVFGDE-------NGTVSLVDTKS-TS--CVLSSAVHS----QCVTGLVFSPHSVPFLASLSE-DC--  280 (344)
T ss_dssp             EEEEECSSCTTEEEEEET-------TSEEEEEESCC-----CCEEEECCS----SCEEEEEECSSSSCCEEEEET-TS--
T ss_pred             eeeeecCCCCcceEEecc-------CCcEEEEECCC-Cc--EEEEEcCCC----CCEEEEEEccCCCeEEEEEeC-CC--
Confidence            567899976654433321       35688889874 43  234455543    4677889999996 6655443 34  


Q ss_pred             eEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927          326 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (548)
Q Consensus       326 ~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d  387 (548)
                      .|.++|+.+++...+..      ...++   ....|.|   +++.|+++...++.-.++.++
T Consensus       281 ~i~vwd~~~~~~~~~~~------H~~~V---~~v~~sp---~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          281 SLAVLDSSLSELFRSQA------HRDFV---RDATWSP---LNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             CEEEECTTCCEEEEECC------CSSCE---EEEEECS---SSTTEEEEEETTSCEEEEECC
T ss_pred             eEEEEECCCCcEEEEcC------CCCCE---EEEEEeC---CCCeEEEEEcCCCeEEEEECC
Confidence            46677888887654421      11111   2345665   777787777777766555443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.34  E-value=9.2e-05  Score=76.18  Aligned_cols=201  Identities=10%  Similarity=0.076  Sum_probs=115.6

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCC--CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKD--SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~--~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      +|.+.++.|||++...++|+++++++..  ...+.+....   ......+++++.++.|+++ +..       ...|.++
T Consensus       118 ~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~---~~~p~glavD~~~~~lY~~-d~~-------~~~I~~~  186 (400)
T 3p5b_L          118 DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---IQAPDGLAVDWIHSNIYWT-DSV-------LGTVSVA  186 (400)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS---CSCEEEEEEETTTTEEEEE-ETT-------TTEEEEE
T ss_pred             eeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC---CCCcccEEEEecCCceEEE-ECC-------CCeEEEE
Confidence            4555578999998888899999998621  1233332210   1123456777777777664 321       2479999


Q ss_pred             ECCCCCccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcC
Q 008927          227 ALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (548)
Q Consensus       227 dl~~g~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~  305 (548)
                      +++++.   .+.+.. +...-...++.|.+.+|+|..|..      ...|+.+++++..   ...++...-    .....
T Consensus       187 ~~~g~~---~~~l~~~~~~~P~~iavdp~~g~ly~td~~~------~~~I~~~~~dG~~---~~~~~~~~l----~~P~g  250 (400)
T 3p5b_L          187 DTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------PAKIKKGGLNGVD---IYSLVTENI----QWPNG  250 (400)
T ss_dssp             CTTTCS---EEEEEECSSCCEEEEEEETTTTEEEEEECSS------SCCEEEEETTSCS---CEEEECSSC----SCEEE
T ss_pred             eCCCCc---eEEEEeCCCCCcceEEEecccCeEEEEeCCC------CCEEEEEeCCCCc---cEEEEECCC----CceEE
Confidence            999886   555554 222234557899888898876532      3579999987322   122333221    23456


Q ss_pred             ceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (548)
Q Consensus       306 ~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~  385 (548)
                      +.++++++.+|++|.  +...|++++++++..+.+.........|   .+   ++.     +++.||++-  -+...|++
T Consensus       251 lavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~l~~P---~g---l~v-----~~~~lywtd--~~~~~V~~  315 (400)
T 3p5b_L          251 ITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHP---FS---LAV-----FEDKVFWTD--IINEAIFS  315 (400)
T ss_dssp             EEEETTTTEEEEEET--TTTEEEEEETTSCCCEEEEECSSTTSSE---EE---EEE-----ETTEEEEEE--SSSCSEEE
T ss_pred             EEEEeCCCEEEEEEC--CCCEEEEEeCCCCccEEEEeCCCCCCCC---EE---EEE-----eCCEEEEec--CCCCeEEE
Confidence            789988774444554  3357999998776655554221111111   11   222     456676654  23445777


Q ss_pred             EECCCC
Q 008927          386 LDDFGH  391 (548)
Q Consensus       386 ~dl~~g  391 (548)
                      +|..+|
T Consensus       316 ~~~~~G  321 (400)
T 3p5b_L          316 ANRLTG  321 (400)
T ss_dssp             EESSSC
T ss_pred             EEcCCC
Confidence            775555

>1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A*

Probab=98.34  E-value=4.9e-07  Score=90.53  Aligned_cols=71  Identities=20%  Similarity=0.213  Sum_probs=57.7

Q ss_pred             cCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCC
Q 008927          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGL  538 (548)
Q Consensus       459 ~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGy  538 (548)
                      ...+.++|++. ||.+|+++++.|++  .    +++.|+||++||++...   ++....+.|+++||+|+.+|+||..+.
T Consensus        66 ~~~~~~~~~~~-dg~~i~~~~~~P~~--~----~~~~p~vv~~HG~g~~~---~~~~~~~~l~~~G~~v~~~d~rG~g~s  135 (337)
T 1vlq_A           66 VEAYDVTFSGY-RGQRIKGWLLVPKL--E----EEKLPCVVQYIGYNGGR---GFPHDWLFWPSMGYICFVMDTRGQGSG  135 (337)
T ss_dssp             EEEEEEEEECG-GGCEEEEEEEEECC--S----CSSEEEEEECCCTTCCC---CCGGGGCHHHHTTCEEEEECCTTCCCS
T ss_pred             eEEEEEEEEcC-CCCEEEEEEEecCC--C----CCCccEEEEEcCCCCCC---CCchhhcchhhCCCEEEEecCCCCCCc
Confidence            35788999997 99999999999964  1    35679999999998653   344556789999999999999998854


Q ss_pred             C
Q 008927          539 S  539 (548)
Q Consensus       539 G  539 (548)
                      +
T Consensus       136 ~  136 (337)
T 1vlq_A          136 W  136 (337)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.34  E-value=8.8e-05  Score=76.78  Aligned_cols=208  Identities=7%  Similarity=0.026  Sum_probs=116.4

Q ss_pred             CCCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCC--------CCCcccCCCCCCccccceeeCCeeeEEECCEE
Q 008927           87 ASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAG--------DEPSDITPKEYAVRTTAQEYGGGAFRIFGDTV  157 (548)
Q Consensus        87 ~~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~--------~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i  157 (548)
                      ....+..++++| ++.++....   ++|...||.......        .....+.....    .+   -.-+|++++..+
T Consensus       127 h~~~v~~l~~~p~~~~~lat~~---~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~----~v---~~l~~~~~~~~~  196 (430)
T 2xyi_A          127 HEGEVNRARYMPQNACVIATKT---PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK----EG---YGLSWNPNLNGY  196 (430)
T ss_dssp             ESSCCSEEEEETTEEEEEEEEC---SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS----CC---CCEEECTTSTTE
T ss_pred             CCCcEEEEEECCCCCcEEEEEC---CCCcEEEEECCCcccccCccccCCCcEEecCCCC----Ce---EEEEeCCCCCCe
Confidence            335677888998 566666543   257778887754200        00111111100    00   112566666645


Q ss_pred             EEEeCCCCeEEEEeCCCCCCC------ceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCC
Q 008927          158 IFSNYKDQRLYKHSIDSKDSS------PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ  231 (548)
Q Consensus       158 ~F~~~~~~~Ly~~~~~~~~~~------~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g  231 (548)
                      +.+...++.|.+.++..+...      .+.+...    ...+.+..|+|++..++++....        ..|.++|+.++
T Consensus       197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h----~~~v~~v~~~p~~~~~l~s~~~d--------g~i~i~d~~~~  264 (430)
T 2xyi_A          197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGH----TAVVEDVAWHLLHESLFGSVADD--------QKLMIWDTRNN  264 (430)
T ss_dssp             EEEECTTSCEEEEETTSCCBGGGEEECSEEECCC----SSCEEEEEECSSCTTEEEEEETT--------SEEEEEETTCS
T ss_pred             EEEEeCCCeEEEEeCCCCCCCCceeccceeecCC----CCCEeeeEEeCCCCCEEEEEeCC--------CeEEEEECCCC
Confidence            566667788888888652011      1222222    23466788999555444443321        47889999876


Q ss_pred             Cc-cCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc
Q 008927          232 NI-QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS  310 (548)
Q Consensus       232 ~~-~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp  310 (548)
                      .. .....+...........|+|+|+.++.+...       ...|.+.++...+.  ....+....    ..+....|+|
T Consensus       265 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~-------dg~v~vwd~~~~~~--~~~~~~~h~----~~v~~i~~sp  331 (430)
T 2xyi_A          265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA-------DKTVALWDLRNLKL--KLHSFESHK----DEIFQVQWSP  331 (430)
T ss_dssp             CSSSCSEEEECCSSCEEEEEECSSCTTEEEEEET-------TSEEEEEETTCTTS--CSEEEECCS----SCEEEEEECS
T ss_pred             CCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeC-------CCeEEEEeCCCCCC--CeEEeecCC----CCEEEEEECC
Confidence            21 0133443334446778999999975545422       35799999875332  233344333    4678899999


Q ss_pred             CCc-EEEEEeCCCCeeeEEEE
Q 008927          311 KGE-LFFVTDRKNGFWNLHKW  330 (548)
Q Consensus       311 DG~-L~~~sd~~~g~~~Ly~~  330 (548)
                      +|+ +++.... +|.-.||-+
T Consensus       332 ~~~~~l~s~~~-d~~i~iwd~  351 (430)
T 2xyi_A          332 HNETILASSGT-DRRLHVWDL  351 (430)
T ss_dssp             SCTTEEEEEET-TSCCEEEEG
T ss_pred             CCCCEEEEEeC-CCcEEEEeC
Confidence            998 7777655 554444433

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.33  E-value=8.5e-05  Score=76.04  Aligned_cols=162  Identities=15%  Similarity=0.182  Sum_probs=102.3

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      .|.+.++.|||++...++|+++++++  +..+.+....   ...-..+++++.+..|++. +..       ...|+++++
T Consensus       122 ~~d~~~~~ly~~D~~~~~I~r~~~~g--~~~~~~~~~~---~~~p~glavd~~~g~lY~~-d~~-------~~~I~~~~~  188 (386)
T 3v65_B          122 DFHHRRELVFWSDVTLDRILRANLNG--SNVEEVVSTG---LESPGGLAVDWVHDKLYWT-DSG-------TSRIEVANL  188 (386)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTS--CCEEEEECSS---CSCCCCEEEETTTTEEEEE-ETT-------TTEEEECBT
T ss_pred             EEecCCCeEEEEeCCCCcEEEEecCC--CCcEEEEeCC---CCCccEEEEEeCCCeEEEE-cCC-------CCeEEEEeC
Confidence            45555779999988888999999987  5555443220   1123456788888887665 321       247999999


Q ss_pred             CCCCccCcEEeeec-CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          229 NGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       229 ~~g~~~~~~~L~~~-~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      ++..   .+.+... ...-...+++|++.+|+|..+..      ...|+.+++++..   ...++...-    .....+.
T Consensus       189 dg~~---~~~l~~~~l~~P~giavdp~~g~ly~td~~~------~~~I~r~~~dG~~---~~~~~~~~~----~~PnGla  252 (386)
T 3v65_B          189 DGAH---RKVLLWQSLEKPRAIALHPMEGTIYWTDWGN------TPRIEASSMDGSG---RRIIADTHL----FWPNGLT  252 (386)
T ss_dssp             TSCS---CEEEECSSCSCEEEEEEETTTTEEEEEECSS------SCEEEEEETTSCS---CEEEECSSC----SCEEEEE
T ss_pred             CCCc---eEEeecCCCCCCcEEEEEcCCCeEEEeccCC------CCEEEEEeCCCCC---cEEEEECCC----CCeeeEE
Confidence            9876   5555532 22334567899999898776432      2689999987321   122232221    2345688


Q ss_pred             ECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeec
Q 008927          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (548)
Q Consensus       308 wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~  341 (548)
                      |+|++..+|++|.  +...|+++++++...+.+.
T Consensus       253 vd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~  284 (386)
T 3v65_B          253 IDYAGRRMYWVDA--KHHVIERANLDGSHRKAVI  284 (386)
T ss_dssp             EEGGGTEEEEEET--TTTEEEEECTTSCSCEEEE
T ss_pred             EeCCCCEEEEEEC--CCCEEEEEeCCCCeeEEEE
Confidence            9988774444454  2347999998765544443

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.32  E-value=0.00089  Score=67.20  Aligned_cols=268  Identities=10%  Similarity=0.068  Sum_probs=140.4

Q ss_pred             CCCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCC
Q 008927           87 ASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ  165 (548)
Q Consensus        87 ~~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~  165 (548)
                      ....+..+.++| |.+++--.    .+|...||.....  .....+......+.       .-+|+|++..|+-. ..++
T Consensus        63 H~~~V~~~~~s~d~~~l~s~s----~Dg~v~vWd~~~~--~~~~~~~~~~~~v~-------~~~~sp~g~~lasg-~~d~  128 (354)
T 2pbi_B           63 HGNKVLCMDWCKDKRRIVSSS----QDGKVIVWDSFTT--NKEHAVTMPCTWVM-------ACAYAPSGCAIACG-GLDN  128 (354)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTC--CEEEEEECSSSCCC-------EEEECTTSSEEEEE-STTS
T ss_pred             CCCeEEEEEECCCCCEEEEEe----CCCeEEEEECCCC--CcceEEecCCCCEE-------EEEECCCCCEEEEe-eCCC
Confidence            335677888888 65554332    2577777755322  11222221111111       12567777666544 4556


Q ss_pred             eEEEEeCCCCCCC-----ceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE-e
Q 008927          166 RLYKHSIDSKDSS-----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV-L  239 (548)
Q Consensus       166 ~Ly~~~~~~~~~~-----~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~-L  239 (548)
                      .+.+.++..+..+     ...+...    ...+....|+|+++.|+....+         ..|.++|+.+++   ... +
T Consensus       129 ~i~v~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~t~s~D---------~~v~lwd~~~~~---~~~~~  192 (354)
T 2pbi_B          129 KCSVYPLTFDKNENMAAKKKSVAMH----TNYLSACSFTNSDMQILTASGD---------GTCALWDVESGQ---LLQSF  192 (354)
T ss_dssp             EEEEEECCCCTTCCSGGGCEEEEEC----SSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTCC---EEEEE
T ss_pred             CEEEEEEeccccccccccceeeecc----CCcEEEEEEeCCCCEEEEEeCC---------CcEEEEeCCCCe---EEEEE
Confidence            5555555431011     1112111    1234567899999988765433         368888999887   433 3


Q ss_pred             eecCCceeeeEECC--CCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEE
Q 008927          240 VSGSDFYAFPRMDP--RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV  317 (548)
Q Consensus       240 ~~~~~~~~~p~~SP--DGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~  317 (548)
                      ......+....|+|  +|+.|+-...        ...|.+.|+.. ++  ....+.+..    ..+....|+|||++++.
T Consensus       193 ~~h~~~v~~~~~~~~~~g~~l~sgs~--------Dg~v~~wd~~~-~~--~~~~~~~h~----~~v~~v~~~p~~~~l~s  257 (354)
T 2pbi_B          193 HGHGADVLCLDLAPSETGNTFVSGGC--------DKKAMVWDMRS-GQ--CVQAFETHE----SDVNSVRYYPSGDAFAS  257 (354)
T ss_dssp             ECCSSCEEEEEECCCSSCCEEEEEET--------TSCEEEEETTT-CC--EEEEECCCS----SCEEEEEECTTSSEEEE
T ss_pred             cCCCCCeEEEEEEeCCCCCEEEEEeC--------CCeEEEEECCC-Cc--EEEEecCCC----CCeEEEEEeCCCCEEEE
Confidence            32333344556766  5777764431        34688889874 43  233344433    45778899999995555


Q ss_pred             EeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce-Eee
Q 008927          318 TDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLL  396 (548)
Q Consensus       318 sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~-~~l  396 (548)
                      ... ++  .|.++|+.+++...+.....      ...+.....+.|   ++..| ++...++.  |.++|+.+++. ..+
T Consensus       258 ~s~-D~--~v~lwd~~~~~~~~~~~~~~------~~~~~~~~~~s~---~g~~l-~~g~~d~~--i~vwd~~~~~~~~~l  322 (354)
T 2pbi_B          258 GSD-DA--TCRLYDLRADREVAIYSKES------IIFGASSVDFSL---SGRLL-FAGYNDYT--INVWDVLKGSRVSIL  322 (354)
T ss_dssp             EET-TS--CEEEEETTTTEEEEEECCTT------CCSCEEEEEECT---TSSEE-EEEETTSC--EEEEETTTCSEEEEE
T ss_pred             EeC-CC--eEEEEECCCCcEEEEEcCCC------cccceeEEEEeC---CCCEE-EEEECCCc--EEEEECCCCceEEEE
Confidence            444 44  35556766665433322110      011222345553   55544 45545554  55668777653 344


Q ss_pred             cCCCceeEee--eecCCEEE
Q 008927          397 DIPFTDIDNI--TLGNDCLF  414 (548)
Q Consensus       397 ~~~~~~~~~~--s~d~~~l~  414 (548)
                      ......+..+  +++++.|+
T Consensus       323 ~~h~~~v~~l~~spdg~~l~  342 (354)
T 2pbi_B          323 FGHENRVSTLRVSPDGTAFC  342 (354)
T ss_dssp             CCCSSCEEEEEECTTSSCEE
T ss_pred             ECCCCcEEEEEECCCCCEEE
Confidence            3333345444  56666543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.32  E-value=0.00013  Score=73.90  Aligned_cols=234  Identities=9%  Similarity=-0.043  Sum_probs=130.5

Q ss_pred             EEEEeCCCCeEEEEeCCCCCCC-------ceecCCCCCCCCceecceeeCCC----C---CEEEEEEeccCCCCCCceeE
Q 008927          157 VIFSNYKDQRLYKHSIDSKDSS-------PLPITPDYGEPLVSYADGIFDPR----F---NRYVTVREDRRQDALNSTTE  222 (548)
Q Consensus       157 i~F~~~~~~~Ly~~~~~~~~~~-------~~~lT~~~~~~~~~~~~~~~SpD----G---~~i~~v~~~~~~~~~~~~~~  222 (548)
                      ++++...++.|++.++..  ++       ...+...    ...+..+.|+|+    |   +.|+....+         ..
T Consensus        28 ~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~g~~~~~l~s~~~d---------g~   92 (397)
T 1sq9_A           28 FTVSCSGDGYLKVWDNKL--LDNENPKDKSYSHFVH----KSGLHHVDVLQAIERDAFELCLVATTSFS---------GD   92 (397)
T ss_dssp             EEEEEETTSEEEEEESBC--CTTCCGGGGEEEEECC----TTCEEEEEEEEEEETTTEEEEEEEEEETT---------SC
T ss_pred             eEEEEcCCCEEEEEECCC--cccccCCCcceEEecC----CCcEEEEEEecccccCCccccEEEEEcCC---------CC
Confidence            444445678888888876  44       3333332    234567789999    8   877665433         24


Q ss_pred             EEEEECCCCCccCc-----EEeeecC------CceeeeEEC----CCCCE-EEEEEecCCCCCCCCceEEEEEecC----
Q 008927          223 IVAIALNGQNIQEP-----KVLVSGS------DFYAFPRMD----PRGER-MAWIEWHHPNMPWDKAELWVGYISE----  282 (548)
Q Consensus       223 l~~idl~~g~~~~~-----~~L~~~~------~~~~~p~~S----PDGk~-La~~~~~~~~~p~~~~~L~v~~~~~----  282 (548)
                      |.++|+.+++   .     .......      ..+....|+    |||+. |+....        ...|++.++..    
T Consensus        93 i~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~--------dg~i~iwd~~~~~~~  161 (397)
T 1sq9_A           93 LLFYRITRED---ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV--------KGTTYIWKFHPFADE  161 (397)
T ss_dssp             EEEEEEEECT---TTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET--------TSCEEEEEEESSSSH
T ss_pred             EEEEEccCCc---ccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC--------CCcEEEEeCCccccc
Confidence            7777777765   3     2222222      456778999    99998 765442        34688888874    


Q ss_pred             --CCcee--eeEEEc-------CCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeeccccccc---C
Q 008927          283 --NGDVY--KRVCVA-------GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF---S  348 (548)
Q Consensus       283 --~g~~~--~~~~l~-------~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~---~  348 (548)
                        ...+.  ....+.       ...    ..+....|+||| ++++... +|  .|..+|+.+++...........   .
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~-~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~h~~~~  233 (397)
T 1sq9_A          162 SNSLTLNWSPTLELQGTVESPMTPS----QFATSVDISERG-LIATGFN-NG--TVQISELSTLRPLYNFESQHSMINNS  233 (397)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSC----CCCCEEEECTTS-EEEEECT-TS--EEEEEETTTTEEEEEEECCC---CCC
T ss_pred             cccceeeccCcceeeeeeccccCCC----CCceEEEECCCc-eEEEEeC-CC--cEEEEECCCCceeEEEeccccccccC
Confidence              22211  000231       112    457788999999 6666554 44  5777787777654332210000   1


Q ss_pred             CCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eecC-------------CCceeEee--eecCCE
Q 008927          349 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDI-------------PFTDIDNI--TLGNDC  412 (548)
Q Consensus       349 ~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~~-------------~~~~~~~~--s~d~~~  412 (548)
                      .+     .....|.|   +++.|+.....++...|.++|+.+++.. .+..             ....+..+  +++++.
T Consensus       234 ~~-----i~~i~~~~---~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  305 (397)
T 1sq9_A          234 NS-----IRSVKFSP---QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET  305 (397)
T ss_dssp             CC-----EEEEEECS---STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSE
T ss_pred             Cc-----cceEEECC---CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCE
Confidence            11     12245554   6666665544444467889999877643 4433             22234444  566665


Q ss_pred             EEEEEecCCCCCeEEEEEcCCCce
Q 008927          413 LFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       413 l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      |+. ++.   ...|.++|+.+++.
T Consensus       306 l~~-~~~---dg~i~iwd~~~~~~  325 (397)
T 1sq9_A          306 LCS-AGW---DGKLRFWDVKTKER  325 (397)
T ss_dssp             EEE-EET---TSEEEEEETTTTEE
T ss_pred             EEE-EeC---CCeEEEEEcCCCce
Confidence            543 332   35788999877753

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.32  E-value=0.00056  Score=70.23  Aligned_cols=262  Identities=11%  Similarity=0.090  Sum_probs=141.4

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L  167 (548)
                      ..+..+.++| +..++- ..   ++|...||.....  ...+.+....-.+.       .-+|++++.. +.+...++.|
T Consensus       109 ~~V~~~~~~p~~~~l~s-~s---~Dg~i~vwd~~~~--~~~~~l~~h~~~V~-------~v~~~~~~~~-l~sgs~D~~i  174 (410)
T 1vyh_C          109 SPVTRVIFHPVFSVMVS-AS---EDATIKVWDYETG--DFERTLKGHTDSVQ-------DISFDHSGKL-LASCSADMTI  174 (410)
T ss_dssp             SCEEEEEECSSSSEEEE-EE---SSSCEEEEETTTC--CCCEEECCCSSCEE-------EEEECTTSSE-EEEEETTSCC
T ss_pred             CcEEEEEEcCCCCEEEE-Ee---CCCeEEEEECCCC--cEEEEEeccCCcEE-------EEEEcCCCCE-EEEEeCCCeE
Confidence            4566778888 554433 22   2577777866433  12333332211111       1245555554 4444456767


Q ss_pred             EEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCce
Q 008927          168 YKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY  246 (548)
Q Consensus       168 y~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~  246 (548)
                      .+.++.+  ++. +.+...    ...+....|+|+|+.|+....+         ..|.++|+.++..  ...+......+
T Consensus       175 ~iwd~~~--~~~~~~~~~h----~~~V~~v~~~p~~~~l~s~s~D---------~~i~~wd~~~~~~--~~~~~~h~~~v  237 (410)
T 1vyh_C          175 KLWDFQG--FECIRTMHGH----DHNVSSVSIMPNGDHIVSASRD---------KTIKMWEVQTGYC--VKTFTGHREWV  237 (410)
T ss_dssp             CEEETTS--SCEEECCCCC----SSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTCCE--EEEEECCSSCE
T ss_pred             EEEeCCC--CceeEEEcCC----CCCEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCcE--EEEEeCCCccE
Confidence            6667765  443 233222    2346677899999987765433         3688899998862  33444444456


Q ss_pred             eeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcC---------------
Q 008927          247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK---------------  311 (548)
Q Consensus       247 ~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspD---------------  311 (548)
                      ....++|||+.|+-...        ...|.+.++.. ++.  ...+.+..    ..+....|+|+               
T Consensus       238 ~~~~~~~~g~~l~s~s~--------D~~v~vwd~~~-~~~--~~~~~~h~----~~v~~~~~~~~~~~~~~~~~~~~~~~  302 (410)
T 1vyh_C          238 RMVRPNQDGTLIASCSN--------DQTVRVWVVAT-KEC--KAELREHR----HVVECISWAPESSYSSISEATGSETK  302 (410)
T ss_dssp             EEEEECTTSSEEEEEET--------TSCEEEEETTT-CCE--EEEECCCS----SCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred             EEEEECCCCCEEEEEcC--------CCeEEEEECCC-Cce--eeEecCCC----ceEEEEEEcCcccccchhhhcccccc
Confidence            67789999998874441        24577888874 431  23333332    34666788886               


Q ss_pred             -----CcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927          312 -----GELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (548)
Q Consensus       312 -----G~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~  386 (548)
                           |.+++.... ++  .|..+|+.+++.......     ...++.   ...+.|   +++.|+ +...++.  |.+.
T Consensus       303 ~~~~~g~~l~sgs~-D~--~i~iwd~~~~~~~~~~~~-----h~~~v~---~v~~~~---~g~~l~-s~s~D~~--i~vw  365 (410)
T 1vyh_C          303 KSGKPGPFLLSGSR-DK--TIKMWDVSTGMCLMTLVG-----HDNWVR---GVLFHS---GGKFIL-SCADDKT--LRVW  365 (410)
T ss_dssp             -----CCEEEEEET-TS--EEEEEETTTTEEEEEEEC-----CSSCEE---EEEECS---SSSCEE-EEETTTE--EEEE
T ss_pred             ccCCCCCEEEEEeC-CC--eEEEEECCCCceEEEEEC-----CCCcEE---EEEEcC---CCCEEE-EEeCCCe--EEEE
Confidence                 444444443 34  477778877764322211     112221   234553   555554 5555564  5556


Q ss_pred             ECCCCc-eEeecCCCceeEee--eecCCEE
Q 008927          387 DDFGHS-LSLLDIPFTDIDNI--TLGNDCL  413 (548)
Q Consensus       387 dl~~g~-~~~l~~~~~~~~~~--s~d~~~l  413 (548)
                      |+.+++ +..+......+..+  ++++..+
T Consensus       366 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  395 (410)
T 1vyh_C          366 DYKNKRCMKTLNAHEHFVTSLDFHKTAPYV  395 (410)
T ss_dssp             CCTTSCCCEEEECCSSCEEEEEECSSSSCE
T ss_pred             ECCCCceEEEEcCCCCcEEEEEEcCCCCEE
Confidence            776664 34444333334444  4555543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.32  E-value=0.00018  Score=71.46  Aligned_cols=234  Identities=13%  Similarity=0.076  Sum_probs=135.7

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccC
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~  235 (548)
                      .|+|.+  ...|.++++++...+...+...    ......+.|++.++.|+++ +..       ...|++++++++.. .
T Consensus         6 ~ll~~~--~~~I~~i~l~~~~~~~~~~~~~----~~~~~~ld~d~~~~~lyw~-D~~-------~~~I~r~~~~g~~~-~   70 (318)
T 3sov_A            6 LLLYAN--RRDLRLVDATNGKENATIVVGG----LEDAAAVDFVFSHGLIYWS-DVS-------EEAIKRTEFNKTES-V   70 (318)
T ss_dssp             EEEEEC--EEEEEEEETTCTTSCCEEEEEE----EEEEEEEEEEGGGTEEEEE-ETT-------TTEEEEEETTSSSC-C
T ss_pred             EEEEEc--cCeEEEEECCCCceEEEEEecC----CCccEEEEEEeCCCEEEEE-ECC-------CCcEEEEEccCCCc-e
Confidence            578886  5679999998721022222221    1123456799888887665 322       24799999988741 0


Q ss_pred             cEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEE
Q 008927          236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF  315 (548)
Q Consensus       236 ~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~  315 (548)
                      ...+..+...-...++.+.+..|+|...       ....|.++++++  .. ...++....    .........|++..+
T Consensus        71 ~~~~~~~l~~p~glavd~~~g~ly~~d~-------~~~~I~~~~~dG--~~-~~~l~~~~~----~~P~giavdp~~g~l  136 (318)
T 3sov_A           71 QNVVVSGLLSPDGLACDWLGEKLYWTDS-------ETNRIEVSNLDG--SL-RKVLFWQEL----DQPRAIALDPSSGFM  136 (318)
T ss_dssp             CEEEEECCSCCCEEEEETTTTEEEEEET-------TTTEEEEEETTS--CS-CEEEECSSC----SSEEEEEEEGGGTEE
T ss_pred             EEEEcCCCCCccEEEEEcCCCeEEEEEC-------CCCEEEEEECCC--Cc-EEEEEeCCC----CCccEEEEeCCCCEE
Confidence            2334443333345677877888877652       245799999863  21 122232221    234456777765544


Q ss_pred             EEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEe
Q 008927          316 FVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL  395 (548)
Q Consensus       316 ~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~  395 (548)
                      |.+|. .....|+++++++...+.+...  .+..|      ..+++.+   +++.||++-  .+...|+++|++++..+.
T Consensus       137 y~td~-~~~~~I~r~~~dG~~~~~~~~~--~l~~P------nglavd~---~~~~lY~aD--~~~~~I~~~d~dG~~~~~  202 (318)
T 3sov_A          137 YWTDW-GEVPKIERAGMDGSSRFIIINS--EIYWP------NGLTLDY---EEQKLYWAD--AKLNFIHKSNLDGTNRQA  202 (318)
T ss_dssp             EEEEC-SSSCEEEEEETTSCSCEEEECS--SCSCE------EEEEEET---TTTEEEEEE--TTTTEEEEEETTSCSCEE
T ss_pred             EEEec-CCCCEEEEEEcCCCCeEEEEEC--CCCCc------cEEEEec---cCCEEEEEE--CCCCEEEEEcCCCCceEE
Confidence            45554 2346799999876554444321  12222      1245543   678888763  345679999998766555


Q ss_pred             ecC-CCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          396 LDI-PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       396 l~~-~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      +.. ....-.+++.+++.+|++-   .....|++++..+++
T Consensus       203 ~~~~~~~~P~glav~~~~lywtd---~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          203 VVKGSLPHPFALTLFEDILYWTD---WSTHSILACNKYTGE  240 (318)
T ss_dssp             EECSCCSCEEEEEEETTEEEEEE---TTTTEEEEEETTTCC
T ss_pred             EecCCCCCceEEEEeCCEEEEEe---cCCCeEEEEECCCCC
Confidence            433 2222334556777777663   245689999986665

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.32  E-value=0.00017  Score=77.44  Aligned_cols=201  Identities=10%  Similarity=0.106  Sum_probs=119.2

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCC----CccCcEEeeecCCc-eeeeEECC--CCCEEEEEEec
Q 008927          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ----NIQEPKVLVSGSDF-YAFPRMDP--RGERMAWIEWH  264 (548)
Q Consensus       192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g----~~~~~~~L~~~~~~-~~~p~~SP--DGk~La~~~~~  264 (548)
                      ....+.|||||+.|++.. +         ..|.++|++++    +.  ...+....+. +....|||  ||++|+... .
T Consensus        20 ~v~~~~~spdg~~l~~~~-~---------~~v~v~~~~~~~~~~~~--~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~-~   86 (615)
T 1pgu_A           20 FTTHLSYDPTTNAIAYPC-G---------KSAFVRCLDDGDSKVPP--VVQFTGHGSSVVTTVKFSPIKGSQYLCSGD-E   86 (615)
T ss_dssp             CCCCCEEETTTTEEEEEE-T---------TEEEEEECCSSCCSSCS--EEEECTTTTSCEEEEEECSSTTCCEEEEEE-T
T ss_pred             ceeEEEECCCCCEEEEec-C---------CeEEEEECCCCCCcccc--ceEEecCCCceEEEEEECcCCCCCEEEEec-C
Confidence            456778999999988864 2         26888898877    41  4445545556 77889999  999888544 1


Q ss_pred             CCCCCCCCceEEEEEecCCC------ceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCee
Q 008927          265 HPNMPWDKAELWVGYISENG------DVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV  337 (548)
Q Consensus       265 ~~~~p~~~~~L~v~~~~~~g------~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~  337 (548)
                             ...|.+.++.. +      +......+....    ..+....|+|||+ |+...+.......|+.++. +...
T Consensus        87 -------dg~v~vw~~~~-~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~-~~~~  153 (615)
T 1pgu_A           87 -------SGKVIVWGWTF-DKESNSVEVNVKSEFQVLA----GPISDISWDFEGRRLCVVGEGRDNFGVFISWDS-GNSL  153 (615)
T ss_dssp             -------TSEEEEEEEEE-EGGGTEEEEEEEEEEECCS----SCEEEEEECTTSSEEEEEECCSSCSEEEEETTT-CCEE
T ss_pred             -------CCEEEEEeCCC-Ccccccccccccchhhccc----ccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC-CCcc
Confidence                   34688888853 2      111223333333    5678899999999 6555543244567888872 2233


Q ss_pred             EeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eecCCCc---eeEee--eec-C
Q 008927          338 LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFT---DIDNI--TLG-N  410 (548)
Q Consensus       338 ~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~~~~~---~~~~~--s~d-~  410 (548)
                      ..+...    ...     .....|.|   +++.++++...++.  +.++|+.+++.. .+.....   .+..+  +++ +
T Consensus       154 ~~~~~~----~~~-----v~~~~~~~---~~~~~l~~~~~d~~--v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (615)
T 1pgu_A          154 GEVSGH----SQR-----INACHLKQ---SRPMRSMTVGDDGS--VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG  219 (615)
T ss_dssp             EECCSC----SSC-----EEEEEECS---SSSCEEEEEETTTE--EEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC
T ss_pred             eeeecC----Ccc-----EEEEEECC---CCCcEEEEEeCCCc--EEEEeCCCcceeeeecccCCCCceEEEEEECCCCC
Confidence            333211    111     11244554   56545666665554  555677776543 3333333   35444  567 5


Q ss_pred             CEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          411 DCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       411 ~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      +.++ +++.   ...|+++|+.+++.
T Consensus       220 ~~l~-~~~~---dg~i~vwd~~~~~~  241 (615)
T 1pgu_A          220 EFVI-TVGS---DRKISCFDGKSGEF  241 (615)
T ss_dssp             CEEE-EEET---TCCEEEEETTTCCE
T ss_pred             CEEE-EEeC---CCeEEEEECCCCCE
Confidence            5544 4433   35788899877763

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.31  E-value=9.7e-05  Score=74.50  Aligned_cols=162  Identities=15%  Similarity=0.165  Sum_probs=102.5

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      .|.+.++.|||++...++|+++++++  +..+.+....   ......+++++.++.|++. +..       ...|+++++
T Consensus        79 ~~d~~~~~ly~~D~~~~~I~r~~~~g--~~~~~~~~~~---~~~p~glavd~~~g~ly~~-d~~-------~~~I~~~~~  145 (349)
T 3v64_C           79 DFHHRRELVFWSDVTLDRILRANLNG--SNVEEVVSTG---LESPGGLAVDWVHDKLYWT-DSG-------TSRIEVANL  145 (349)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECSS---CSCCCEEEEETTTTEEEEE-ETT-------TTEEEEEET
T ss_pred             EEeccccEEEEEeccCCceEEEecCC--CCceEEEeCC---CCCccEEEEecCCCeEEEE-cCC-------CCeEEEEcC
Confidence            45555779999988888999999997  5555543320   1123456788888887665 321       247999999


Q ss_pred             CCCCccCcEEeeec-CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          229 NGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       229 ~~g~~~~~~~L~~~-~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      ++..   .+.+... ...-...+++|++..|+|..+..      ...|+.+++++  .  ..+.+.... -  .....+.
T Consensus       146 dG~~---~~~l~~~~l~~P~~iavdp~~g~ly~td~~~------~~~I~r~~~dG--~--~~~~~~~~~-~--~~PnGla  209 (349)
T 3v64_C          146 DGAH---RKVLLWQSLEKPRAIALHPMEGTIYWTDWGN------TPRIEASSMDG--S--GRRIIADTH-L--FWPNGLT  209 (349)
T ss_dssp             TSCS---CEEEECTTCSCEEEEEEETTTTEEEEEECSS------SCEEEEEETTS--C--SCEESCCSS-C--SCEEEEE
T ss_pred             CCCc---eEEEEeCCCCCcceEEEecCcCeEEEeccCC------CCEEEEEeCCC--C--CcEEEEECC-C--CCcceEE
Confidence            9876   5655532 22334567899888888776432      26799999873  2  123332211 1  2345678


Q ss_pred             ECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeec
Q 008927          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (548)
Q Consensus       308 wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~  341 (548)
                      ++|++..+|++|.  +...|+++++++...+.+.
T Consensus       210 ~d~~~~~lY~aD~--~~~~I~~~~~dG~~~~~~~  241 (349)
T 3v64_C          210 IDYAGRRMYWVDA--KHHVIERANLDGSHRKAVI  241 (349)
T ss_dssp             EETTTTEEEEEET--TTTEEEEEETTSCSCEEEE
T ss_pred             EeCCCCEEEEEEC--CCCEEEEEeCCCCceEEEE
Confidence            9988774444554  2347999998765544443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.30  E-value=0.00049  Score=74.04  Aligned_cols=249  Identities=10%  Similarity=0.022  Sum_probs=135.3

Q ss_pred             eeE----EECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCC---CC-----CCceecceeeCCCCCEEEEEEeccCCCC
Q 008927          149 AFR----IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY---GE-----PLVSYADGIFDPRFNRYVTVREDRRQDA  216 (548)
Q Consensus       149 ~~~----~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~---~~-----~~~~~~~~~~SpDG~~i~~v~~~~~~~~  216 (548)
                      .++    |||++++..+...++|.++|..+  .++....+..   .+     +..+...+..|+++..+++...+     
T Consensus       246 a~s~~~~pDGk~l~v~n~~~~~v~ViD~~t--~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~-----  318 (567)
T 1qks_A          246 ETSKMEGWEDKYAIAGAYWPPQYVIMDGET--LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE-----  318 (567)
T ss_dssp             EECCSTTCTTTEEEEEEEETTEEEEEETTT--CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-----
T ss_pred             EEccccCCCCCEEEEEEccCCeEEEEECCC--CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC-----
Confidence            567    57888888887778999999876  5553321110   00     01245566788888765443221     


Q ss_pred             CCceeEEEEEECCCCCccCcEEee--ecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEc-
Q 008927          217 LNSTTEIVAIALNGQNIQEPKVLV--SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA-  293 (548)
Q Consensus       217 ~~~~~~l~~idl~~g~~~~~~~L~--~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~-  293 (548)
                         ...|+++|....+   ...++  ....+.....|+|||++++ ++...      ...|.++|.+. +++.. ..-. 
T Consensus       319 ---~g~v~~vd~~~~~---~~~v~~i~~~~~~~d~~~~pdgr~~~-va~~~------sn~V~ViD~~t-~kl~~-~i~vg  383 (567)
T 1qks_A          319 ---TGKILLVDYTDLN---NLKTTEISAERFLHDGGLDGSHRYFI-TAANA------RNKLVVIDTKE-GKLVA-IEDTG  383 (567)
T ss_dssp             ---TTEEEEEETTCSS---EEEEEEEECCSSEEEEEECTTSCEEE-EEEGG------GTEEEEEETTT-TEEEE-EEECS
T ss_pred             ---CCeEEEEecCCCc---cceeeeeeccccccCceECCCCCEEE-EEeCC------CCeEEEEECCC-CcEEE-EEecc
Confidence               2589999987754   22221  1223444567999999875 44232      45799999984 55322 2222 


Q ss_pred             CCCCCcccCCcCce-ECcCCc-EEEEEeCCCCeeeEEEEeccCC-------ee-EeecccccccCCCcccccCcceeeee
Q 008927          294 GFDPTIVESPTEPK-WSSKGE-LFFVTDRKNGFWNLHKWIESNN-------EV-LAIYSLDAEFSRPLWVFGINSYEIIQ  363 (548)
Q Consensus       294 ~~~~~~~~~~~~~~-wspDG~-L~~~sd~~~g~~~Ly~~d~~~g-------~~-~~l~~~~~d~~~p~w~~~~~~~~~~~  363 (548)
                      +.. .  ..-..+. +.||+. +|+++..  |...|-+++.+++       ++ +.+. ...  ..+.+      .... 
T Consensus       384 g~~-P--hpg~g~~~~~p~~g~v~~t~~~--g~~~Vsvid~~~~~~~~~~~kvv~~i~-~~g--~g~~~------i~~~-  448 (567)
T 1qks_A          384 GQT-P--HPGRGANFVHPTFGPVWATSHM--GDDSVALIGTDPEGHPDNAWKILDSFP-ALG--GGSLF------IKTH-  448 (567)
T ss_dssp             SSS-B--CCTTCEEEEETTTEEEEEEEBS--SSSEEEEEECCTTTCTTTBTSEEEEEE-CSC--SCCCC------EECC-
T ss_pred             CcC-C--CCccceeeECCCCCcEEEeCCC--CCCeEEEecCCCCCCccccCEEEEEEe-cCC--CCCEE------EEeC-
Confidence            211 0  1112233 478867 7665554  3335777776552       22 2221 110  11111      1122 


Q ss_pred             ecCCCCEEEEEEEeCC----eEEEEEEECCCC-----c--eEeec------CC--CceeEe--eeecCCEEEEEEec-CC
Q 008927          364 SHGEKNLIACSYRQNG----RSYLGILDDFGH-----S--LSLLD------IP--FTDIDN--ITLGNDCLFVEGAS-GV  421 (548)
Q Consensus       364 ~~~d~~~l~~~~~~~g----~~~L~~~dl~~g-----~--~~~l~------~~--~~~~~~--~s~d~~~l~~~~ss-~~  421 (548)
                        ++++.+++....+.    ...|.++|+++.     .  .+.|.      .+  ...+..  ++++|+++++..-+ ..
T Consensus       449 --p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~  526 (567)
T 1qks_A          449 --PNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKD  526 (567)
T ss_dssp             --TTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTT
T ss_pred             --CCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCC
Confidence              27777765432111    347888887655     1  13332      11  112222  37899999887532 33


Q ss_pred             CCCeEEEEEcCCCce
Q 008927          422 EPSSVAKVTLDDHKL  436 (548)
Q Consensus       422 ~p~~l~~~d~~~~~~  436 (548)
                      ....|.++|.+++++
T Consensus       527 ~~~~i~v~D~~t~~~  541 (567)
T 1qks_A          527 QESALVVVDDKTLEL  541 (567)
T ss_dssp             SCCEEEEEETTTTEE
T ss_pred             CCCcEEEEECCCceE
Confidence            568999999888764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.29  E-value=2.6e-05  Score=78.72  Aligned_cols=192  Identities=9%  Similarity=-0.036  Sum_probs=110.4

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      +|++++..|+- ...++.|.+.++..  ++. ..+...    ...+....|+|+++.+++.....        ..|.++|
T Consensus       146 ~~spdg~~l~s-gs~dg~v~iwd~~~--~~~~~~~~~h----~~~v~~v~~s~~~~~~~~s~~~d--------g~v~~wd  210 (357)
T 4g56_B          146 SVFSDGTQAVS-GGKDFSVKVWDLSQ--KAVLKSYNAH----SSEVNCVAACPGKDTIFLSCGED--------GRILLWD  210 (357)
T ss_dssp             EECSSSSEEEE-EETTSCEEEEETTT--TEEEEEECCC----SSCEEEEEECTTCSSCEEEEETT--------SCEEECC
T ss_pred             EECCCCCEEEE-EeCCCeEEEEECCC--CcEEEEEcCC----CCCEEEEEEccCCCceeeeeccC--------CceEEEE
Confidence            56677776654 34567788888876  433 333322    22355678999987554433321        2577889


Q ss_pred             CCCCCccCcEE-ee--ecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCc
Q 008927          228 LNGQNIQEPKV-LV--SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT  304 (548)
Q Consensus       228 l~~g~~~~~~~-L~--~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~  304 (548)
                      +.+++   ... +.  ..........|+||+..++.....       ...|.+.|+.. ++  ....+.+..    ..+.
T Consensus       211 ~~~~~---~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~-------d~~i~~wd~~~-~~--~~~~~~~~~----~~v~  273 (357)
T 4g56_B          211 TRKPK---PATRIDFCASDTIPTSVTWHPEKDDTFACGDE-------TGNVSLVNIKN-PD--SAQTSAVHS----QNIT  273 (357)
T ss_dssp             TTSSS---CBCBCCCTTCCSCEEEEEECTTSTTEEEEEES-------SSCEEEEESSC-GG--GCEEECCCS----SCEE
T ss_pred             CCCCc---eeeeeeeccccccccchhhhhcccceEEEeec-------ccceeEEECCC-Cc--EeEEEeccc----eeEE
Confidence            98876   322 22  122335567899997655434321       34688889874 43  234454433    4577


Q ss_pred             CceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEE
Q 008927          305 EPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL  383 (548)
Q Consensus       305 ~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L  383 (548)
                      ...|+|||+ +++.... ++  .|.++|+++++......      ...++   ...+|.|   .++.++++...++.-.+
T Consensus       274 ~l~~sp~~~~~lasgs~-D~--~i~iwd~~~~~~~~~~~------H~~~V---~~vafsP---~d~~~l~s~s~Dg~v~i  338 (357)
T 4g56_B          274 GLAYSYHSSPFLASISE-DC--TVAVLDADFSEVFRDLS------HRDFV---TGVAWSP---LDHSKFTTVGWDHKVLH  338 (357)
T ss_dssp             EEEECSSSSCCEEEEET-TS--CEEEECTTSCEEEEECC------CSSCE---EEEEECS---SSTTEEEEEETTSCEEE
T ss_pred             EEEEcCCCCCEEEEEeC-CC--EEEEEECCCCcEeEECC------CCCCE---EEEEEeC---CCCCEEEEEcCCCeEEE
Confidence            889999986 6555443 34  46777888887654431      11111   2245553   33445556666776666


Q ss_pred             EEEE
Q 008927          384 GILD  387 (548)
Q Consensus       384 ~~~d  387 (548)
                      |-++
T Consensus       339 W~~~  342 (357)
T 4g56_B          339 HHLP  342 (357)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            5443

>1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21

Probab=98.29  E-value=6.3e-07  Score=97.80  Aligned_cols=76  Identities=13%  Similarity=0.127  Sum_probs=56.5

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccc----cc-Ccc----ChHHHHHHhcCcEEEEeC
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE----AR-GIL----NLSIQYWTSRGWAFVDVN  531 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~----~~-~~~----~~~~Q~~asrGyaVl~~N  531 (548)
                      .+.+++++. ||.+|++++|.|.+       .+++|+||++||-....    +. ..|    ....|+|+++||+|+.+|
T Consensus        25 ~~~v~i~~~-DG~~L~~~~~~P~~-------~~~~P~vl~~hgyg~~~~~~~~~~~~~~~~~~~~~~~la~~Gy~Vv~~D   96 (615)
T 1mpx_A           25 KREVMIPMR-DGVKLHTVIVLPKG-------AKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQD   96 (615)
T ss_dssp             EEEEEEECT-TSCEEEEEEEEETT-------CCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEE
T ss_pred             EEEEEEECC-CCCEEEEEEEeCCC-------CCCeeEEEEEcCCCCccccccccccccccccchhHHHHHhCCeEEEEEC
Confidence            467899998 99999999999964       25789999999633221    11 111    111299999999999999


Q ss_pred             CCCCCCCChhhhh
Q 008927          532 YGGSTGLSSVPST  544 (548)
Q Consensus       532 yRGStGyG~~f~~  544 (548)
                      +||+.+++..|..
T Consensus        97 ~RG~g~S~g~~~~  109 (615)
T 1mpx_A           97 VRGKYGSEGDYVM  109 (615)
T ss_dssp             CTTSTTCCSCCCT
T ss_pred             CCCCCCCCCcccc
Confidence            9999888776643

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.28  E-value=0.00011  Score=72.86  Aligned_cols=202  Identities=11%  Similarity=0.094  Sum_probs=114.4

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCC--CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKD--SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~--~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      .|.++++.|||++...+.|+++++++..  ...+.+....   ......+++++.++.|++. +..       ...|.++
T Consensus        36 ~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~---~~~p~glavd~~~~~ly~~-d~~-------~~~I~~~  104 (316)
T 1ijq_A           36 DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---IQAPDGLAVDWIHSNIYWT-DSV-------LGTVSVA  104 (316)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS---CSCCCEEEEETTTTEEEEE-ETT-------TTEEEEE
T ss_pred             EEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC---CCCcCEEEEeecCCeEEEE-ECC-------CCEEEEE
Confidence            4555577999999888899999997510  1223332210   1123456778777777664 322       2579999


Q ss_pred             ECCCCCccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcC
Q 008927          227 ALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (548)
Q Consensus       227 dl~~g~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~  305 (548)
                      ++++..   .+.+.. ....-...+++|++.+|+|..+..      ...|+.++++  |..  .+.+.... -  .....
T Consensus       105 ~~~g~~---~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~------~~~I~~~~~d--G~~--~~~~~~~~-~--~~P~g  168 (316)
T 1ijq_A          105 DTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------PAKIKKGGLN--GVD--IYSLVTEN-I--QWPNG  168 (316)
T ss_dssp             ETTSSS---EEEEEECTTCCEEEEEEETTTTEEEEEECSS------SCEEEEEETT--SCC--EEEEECSS-C--SCEEE
T ss_pred             eCCCCc---eEEEEECCCCCcceEEeCCCCCEEEEEccCC------CCeEEEEcCC--CCC--eEEEEECC-C--CCceE
Confidence            998876   555554 223334567899888888776431      2579999986  331  22232211 0  33456


Q ss_pred             ceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (548)
Q Consensus       306 ~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~  385 (548)
                      +.|+++++.+|.+|.  +...|+++++++...+.+.........|   .+   .+.     +++.||++.  -+...|++
T Consensus       169 la~d~~~~~lY~~D~--~~~~I~~~d~dg~~~~~~~~~~~~~~~P---~g---iav-----~~~~ly~~d--~~~~~V~~  233 (316)
T 1ijq_A          169 ITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHP---FS---LAV-----FEDKVFWTD--IINEAIFS  233 (316)
T ss_dssp             EEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSE---EE---EEE-----ETTEEEEEE--TTTTEEEE
T ss_pred             EEEeccCCEEEEEEC--CCCeEEEEecCCCceEEEeecCCccCCc---EE---EEE-----ECCEEEEEE--CCCCeEEE
Confidence            789998774445554  2347999998765555443211111111   11   223     346676643  33456777


Q ss_pred             EECCCCc
Q 008927          386 LDDFGHS  392 (548)
Q Consensus       386 ~dl~~g~  392 (548)
                      ++..+|+
T Consensus       234 ~~~~~g~  240 (316)
T 1ijq_A          234 ANRLTGS  240 (316)
T ss_dssp             EETTTCC
T ss_pred             EeCCCCc
Confidence            7765553

>3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii}

Probab=98.26  E-value=1.5e-06  Score=80.17  Aligned_cols=69  Identities=16%  Similarity=0.113  Sum_probs=54.1

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccccc---CccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---GILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~---~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      .+|.+++++. || +++++++.|.+       .++.|+||++||+|.....   ..|....+.|+++||.|+.+|+||..
T Consensus         5 ~~~~~~~~~~-~g-~l~~~~~~p~~-------~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g   75 (208)
T 3trd_A            5 TNEDFLIQGP-VG-QLEVMITRPKG-------IEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVG   75 (208)
T ss_dssp             SSSCEEEECS-SS-EEEEEEECCSS-------CCCSEEEEEECSCGGGTCCTTCHHHHHHHHHHHHTTCEEEEECCTTST
T ss_pred             ccceEEEECC-Cc-eEEEEEEcCCC-------CCCCCEEEEEcCCCCCCCccCCchHHHHHHHHHHCCCEEEEEecCCCC
Confidence            4678899998 99 99999999953       2357999999998743322   22445678899999999999999865


Q ss_pred             C
Q 008927          537 G  537 (548)
Q Consensus       537 G  537 (548)
                      .
T Consensus        76 ~   76 (208)
T 3trd_A           76 K   76 (208)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.26  E-value=6.5e-06  Score=83.14  Aligned_cols=156  Identities=13%  Similarity=0.062  Sum_probs=84.2

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +|+++++.|+... .++.|.+.++.+  +..+.+..... ....+..+.|+|||+.|+....+         ..|.++|+
T Consensus        18 ~~s~~g~~l~~~~-~d~~i~iw~~~~--~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~d---------~~v~vwd~   84 (377)
T 3dwl_C           18 AFNSQRTEFVTTT-ATNQVELYEQDG--NGWKHARTFSD-HDKIVTCVDWAPKSNRIVTCSQD---------RNAYVYEK   84 (377)
T ss_dssp             EECSSSSEEECCC-SSSCBCEEEEET--TEEEECCCBCC-CSSCEEEEEECTTTCCEEEEETT---------SSEEEC--
T ss_pred             EECCCCCEEEEec-CCCEEEEEEccC--CceEEEEEEec-CCceEEEEEEeCCCCEEEEEeCC---------CeEEEEEc
Confidence            5777777666543 455555556554  42233322211 12346678899999988776433         24777777


Q ss_pred             CCCC-ccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcC-CCCCcccCCcCc
Q 008927          229 NGQN-IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-FDPTIVESPTEP  306 (548)
Q Consensus       229 ~~g~-~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~-~~~~~~~~~~~~  306 (548)
                      .+++ ......+......+....|+|||+.|+....        ...|.+.+++....+.....+.. ..    ..+..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------d~~i~iwd~~~~~~~~~~~~~~~~h~----~~v~~~  152 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG--------ARVISVCYFEQENDWWVSKHLKRPLR----STILSL  152 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEES--------SSCEEECCC-----CCCCEEECSSCC----SCEEEE
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCCEEEEEec--------CCeEEEEEECCcccceeeeEeecccC----CCeEEE
Confidence            7654 1112333344445677899999999886552        24577778774321111334443 22    567889


Q ss_pred             eECcCCcEEEEEeCCCCeeeEEEE
Q 008927          307 KWSSKGELFFVTDRKNGFWNLHKW  330 (548)
Q Consensus       307 ~wspDG~L~~~sd~~~g~~~Ly~~  330 (548)
                      .|+|||++++.... ++.-.||-+
T Consensus       153 ~~~~~~~~l~~~~~-d~~i~iwd~  175 (377)
T 3dwl_C          153 DWHPNNVLLAAGCA-DRKAYVLSA  175 (377)
T ss_dssp             EECTTSSEEEEEES-SSCEEEEEE
T ss_pred             EEcCCCCEEEEEeC-CCEEEEEEE
Confidence            99999995555444 454444433

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.26  E-value=0.00016  Score=72.04  Aligned_cols=210  Identities=10%  Similarity=-0.032  Sum_probs=110.7

Q ss_pred             eEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCC-CceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEP-LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~-~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      ++++ ++|+.++..++.|+++|+.+  ++.. .+....... ......+.+  ++++|+. ....      ....|.++|
T Consensus        91 ~~~~-g~lyv~~~~~~~v~~iD~~t--~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv-~~~~------~~~~v~viD  158 (328)
T 3dsm_A           91 FLSD-EKAYVTQIWDYRIFIINPKT--YEITGYIECPDMDMESGSTEQMVQ--YGKYVYV-NCWS------YQNRILKID  158 (328)
T ss_dssp             EEET-TEEEEEEBSCSEEEEEETTT--TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEE-EECT------TCCEEEEEE
T ss_pred             EeCC-CeEEEEECCCCeEEEEECCC--CeEEEEEEcCCccccCCCcceEEE--ECCEEEE-EcCC------CCCEEEEEE
Confidence            3344 47777664678999999986  4433 333221000 002223445  5666544 3321      125799999


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCC-CCCC--CCceEEEEEecCCCceeeeEEEcCCCCCcccCCc
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHP-NMPW--DKAELWVGYISENGDVYKRVCVAGFDPTIVESPT  304 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~-~~p~--~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~  304 (548)
                      +++++.  .+.+..+. .-....++|||+ |++...... ..+|  +...|+++|.++ +++.....+...     ....
T Consensus       159 ~~t~~~--~~~i~~g~-~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t-~~v~~~~~~~~g-----~~p~  228 (328)
T 3dsm_A          159 TETDKV--VDELTIGI-QPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAET-FTVEKQFKFKLG-----DWPS  228 (328)
T ss_dssp             TTTTEE--EEEEECSS-CBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTT-TEEEEEEECCTT-----CCCE
T ss_pred             CCCCeE--EEEEEcCC-CccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCC-CeEEEEEecCCC-----CCce
Confidence            999872  22333222 223457899997 544443211 1111  126799999873 553222222211     2456


Q ss_pred             CceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEe--CCeEE
Q 008927          305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ--NGRSY  382 (548)
Q Consensus       305 ~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~--~g~~~  382 (548)
                      .+.++|||+.+|+++.     .|+++|++++++............|      ..+.+.|   +++.||++...  .+...
T Consensus       229 ~la~~~d~~~lyv~~~-----~v~~~d~~t~~~~~~~~~~~~~~~p------~gi~vdp---~~g~lyva~~~~y~~~~~  294 (328)
T 3dsm_A          229 EVQLNGTRDTLYWINN-----DIWRMPVEADRVPVRPFLEFRDTKY------YGLTVNP---NNGEVYVADAIDYQQQGI  294 (328)
T ss_dssp             EEEECTTSCEEEEESS-----SEEEEETTCSSCCSSCSBCCCSSCE------EEEEECT---TTCCEEEEECTTSSSEEE
T ss_pred             eEEEecCCCEEEEEcc-----EEEEEECCCCceeeeeeecCCCCce------EEEEEcC---CCCeEEEEcccccccCCE
Confidence            7899999995556553     7999999887753111000000111      1134432   46677655311  24567


Q ss_pred             EEEEECCCCc-eEee
Q 008927          383 LGILDDFGHS-LSLL  396 (548)
Q Consensus       383 L~~~dl~~g~-~~~l  396 (548)
                      |+++|++ |+ +..+
T Consensus       295 V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          295 VYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             EEEECTT-CCEEEEE
T ss_pred             EEEECCC-CCEEEEE
Confidence            8999987 54 3344

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.25  E-value=0.0001  Score=73.75  Aligned_cols=202  Identities=9%  Similarity=0.044  Sum_probs=111.5

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCC
Q 008927          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (548)
Q Consensus       192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~  271 (548)
                      .+..+.|+|||+.|++...+         ..|.++|+.+++......+......+....|+|||+.|+....        
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d---------~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--------   72 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNN---------HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT--------   72 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSS---------SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET--------
T ss_pred             CeEEEEECCCCCEEEEEeCC---------CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcC--------
Confidence            35667899999987765322         4688888888740004444444455677899999998885542        


Q ss_pred             CceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCee----Eeeccccccc
Q 008927          272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV----LAIYSLDAEF  347 (548)
Q Consensus       272 ~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~----~~l~~~~~d~  347 (548)
                      ...|.+.+++. ++......+....    ..+....|+|||+++++... +|.-.+|.++  .++.    ..+...   .
T Consensus        73 dg~i~vwd~~~-~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~-d~~v~i~d~~--~~~~~~~~~~~~~~---~  141 (372)
T 1k8k_C           73 DRNAYVWTLKG-RTWKPTLVILRIN----RAARCVRWAPNEKKFAVGSG-SRVISICYFE--QENDWWVCKHIKKP---I  141 (372)
T ss_dssp             TSCEEEEEEET-TEEEEEEECCCCS----SCEEEEEECTTSSEEEEEET-TSSEEEEEEE--TTTTEEEEEEECTT---C
T ss_pred             CCeEEEEECCC-CeeeeeEEeecCC----CceeEEEECCCCCEEEEEeC-CCEEEEEEec--CCCcceeeeeeecc---c
Confidence            24688888874 4422222223322    45778899999995555544 5555555444  4431    222110   0


Q ss_pred             CCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECC------------------CCce-EeecCCCceeEee--
Q 008927          348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF------------------GHSL-SLLDIPFTDIDNI--  406 (548)
Q Consensus       348 ~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~------------------~g~~-~~l~~~~~~~~~~--  406 (548)
                      ..     ......|.|   +++.|+ +...++.-  +++|+.                  .++. ..+......+..+  
T Consensus       142 ~~-----~i~~~~~~~---~~~~l~-~~~~dg~i--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  210 (372)
T 1k8k_C          142 RS-----TVLSLDWHP---NSVLLA-AGSCDFKC--RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF  210 (372)
T ss_dssp             CS-----CEEEEEECT---TSSEEE-EEETTSCE--EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE
T ss_pred             CC-----CeeEEEEcC---CCCEEE-EEcCCCCE--EEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEE
Confidence            11     112244553   555444 44555554  455532                  3332 2333222334444  


Q ss_pred             eecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          407 TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       407 s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      +++++.++... .   ...|.++|+.+++.
T Consensus       211 ~~~~~~l~~~~-~---d~~i~i~d~~~~~~  236 (372)
T 1k8k_C          211 SANGSRVAWVS-H---DSTVCLADADKKMA  236 (372)
T ss_dssp             CSSSSEEEEEE-T---TTEEEEEEGGGTTE
T ss_pred             CCCCCEEEEEe-C---CCEEEEEECCCCce
Confidence            56666554433 2   35788899877653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.25  E-value=0.00012  Score=72.72  Aligned_cols=197  Identities=12%  Similarity=0.132  Sum_probs=118.4

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCC-ce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSS-PL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~-~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      .|.+.++.|||++...++|+++++++  +. .+ .+....    .....+++++.+..|++. +..       ...|.++
T Consensus        41 d~d~~~~~lyw~D~~~~~I~r~~~~g--~~~~~~~~~~~l----~~p~glavd~~~g~ly~~-d~~-------~~~I~~~  106 (318)
T 3sov_A           41 DFVFSHGLIYWSDVSEEAIKRTEFNK--TESVQNVVVSGL----LSPDGLACDWLGEKLYWT-DSE-------TNRIEVS  106 (318)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEETTS--SSCCCEEEEECC----SCCCEEEEETTTTEEEEE-ETT-------TTEEEEE
T ss_pred             EEEeCCCEEEEEECCCCcEEEEEccC--CCceEEEEcCCC----CCccEEEEEcCCCeEEEE-ECC-------CCEEEEE
Confidence            45555789999998888999999987  42 12 222210    123356788877777664 321       2579999


Q ss_pred             ECCCCCccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcC
Q 008927          227 ALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (548)
Q Consensus       227 dl~~g~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~  305 (548)
                      ++++..   .+.+.. ....-...++.|++.+|+|..|.      ....|+.+++++  .. ...++...-    .....
T Consensus       107 ~~dG~~---~~~l~~~~~~~P~giavdp~~g~ly~td~~------~~~~I~r~~~dG--~~-~~~~~~~~l----~~Png  170 (318)
T 3sov_A          107 NLDGSL---RKVLFWQELDQPRAIALDPSSGFMYWTDWG------EVPKIERAGMDG--SS-RFIIINSEI----YWPNG  170 (318)
T ss_dssp             ETTSCS---CEEEECSSCSSEEEEEEEGGGTEEEEEECS------SSCEEEEEETTS--CS-CEEEECSSC----SCEEE
T ss_pred             ECCCCc---EEEEEeCCCCCccEEEEeCCCCEEEEEecC------CCCEEEEEEcCC--CC-eEEEEECCC----CCccE
Confidence            999876   566642 22233456788888888877643      146799999863  21 122333221    33456


Q ss_pred             ceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (548)
Q Consensus       306 ~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~  385 (548)
                      +.|+++++.+|.+|.  +...|+++++++...+.+...  ....|   .+   .+.     +++.||++-  -+...|++
T Consensus       171 lavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~--~~~~P---~g---lav-----~~~~lywtd--~~~~~V~~  233 (318)
T 3sov_A          171 LTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKG--SLPHP---FA---LTL-----FEDILYWTD--WSTHSILA  233 (318)
T ss_dssp             EEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECS--CCSCE---EE---EEE-----ETTEEEEEE--TTTTEEEE
T ss_pred             EEEeccCCEEEEEEC--CCCEEEEEcCCCCceEEEecC--CCCCc---eE---EEE-----eCCEEEEEe--cCCCeEEE
Confidence            889998774444554  335799999876555555421  11222   11   222     456777762  34456888


Q ss_pred             EECCCCc
Q 008927          386 LDDFGHS  392 (548)
Q Consensus       386 ~dl~~g~  392 (548)
                      ++..+|+
T Consensus       234 ~~~~~G~  240 (318)
T 3sov_A          234 CNKYTGE  240 (318)
T ss_dssp             EETTTCC
T ss_pred             EECCCCC
Confidence            8886664

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.25  E-value=0.00056  Score=80.51  Aligned_cols=202  Identities=9%  Similarity=0.018  Sum_probs=115.8

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECC-EEEEEeCCCCe
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR  166 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~-~i~F~~~~~~~  166 (548)
                      ..+..+.++| |+.++-..    .+|...||.....  .....+......+.       .-.|+++++ .++.+...++.
T Consensus       658 ~~v~~~~~s~~~~~l~s~~----~d~~v~vwd~~~~--~~~~~~~~~~~~v~-------~~~~~~~~~~~~l~sg~~d~~  724 (1249)
T 3sfz_A          658 DEVLCCAFSSDDSYIATCS----ADKKVKIWDSATG--KLVHTYDEHSEQVN-------CCHFTNKSNHLLLATGSNDFF  724 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEE----TTSEEEEEETTTC--CEEEEEECCSSCEE-------EEEECSSSSCCEEEEEETTSC
T ss_pred             CCEEEEEEecCCCEEEEEe----CCCeEEEEECCCC--ceEEEEcCCCCcEE-------EEEEecCCCceEEEEEeCCCe
Confidence            4566788888 66555433    2466667765332  11222222111111       124555433 45555556788


Q ss_pred             EEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeec---
Q 008927          167 LYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG---  242 (548)
Q Consensus       167 Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~---  242 (548)
                      |.+.++..  ++.. .+...    ...+..+.|+|||+.|+....+         ..|.++|+.+++.  ...+...   
T Consensus       725 v~vwd~~~--~~~~~~~~~h----~~~v~~~~~sp~~~~l~s~s~d---------g~v~vwd~~~~~~--~~~~~~~~~~  787 (1249)
T 3sfz_A          725 LKLWDLNQ--KECRNTMFGH----TNSVNHCRFSPDDELLASCSAD---------GTLRLWDVRSANE--RKSINVKRFF  787 (1249)
T ss_dssp             EEEEETTS--SSEEEEECCC----SSCEEEEEECSSTTEEEEEESS---------SEEEEEEGGGTEE--EEEEECCCCC
T ss_pred             EEEEECCC--cchhheecCC----CCCEEEEEEecCCCEEEEEECC---------CeEEEEeCCCCcc--cceecccccc
Confidence            88888876  4433 33332    2346677899999988776443         3688888887751  1122110   


Q ss_pred             ----------CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCC
Q 008927          243 ----------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (548)
Q Consensus       243 ----------~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG  312 (548)
                                ........|||||+.|+...         ...+++.++..++.+  .....+..    ..+....|+|+|
T Consensus       788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~---------~~~v~~~d~~~~~~~--~~~~~~~~----~~v~~~~~sp~~  852 (1249)
T 3sfz_A          788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAA---------KNKVLLFDIHTSGLL--AEIHTGHH----STIQYCDFSPYD  852 (1249)
T ss_dssp             --------CCCCCBCCCCBCTTSSEEEEEE---------TTEEEEEETTTCCEE--EEEECSSS----SCCCEEEECSST
T ss_pred             cccCCccccccceEEEEEECCCCCEEEEEc---------CCcEEEEEecCCCce--eEEcCCCC----CceEEEEEcCCC
Confidence                      11234557999999988654         246888898853321  12222332    567889999999


Q ss_pred             cEEEEEeCCCCeeeEEEEeccCCeeE
Q 008927          313 ELFFVTDRKNGFWNLHKWIESNNEVL  338 (548)
Q Consensus       313 ~L~~~sd~~~g~~~Ly~~d~~~g~~~  338 (548)
                      +++++... +|  .+..++..+++..
T Consensus       853 ~~l~~~~~-dg--~v~vwd~~~~~~~  875 (1249)
T 3sfz_A          853 HLAVIALS-QY--CVELWNIDSRLKV  875 (1249)
T ss_dssp             TEEEEECS-SS--CEEEEETTTTEEE
T ss_pred             CEEEEEeC-CC--eEEEEEcCCCcee
Confidence            96555544 44  4666677676543

>3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium}

Probab=98.23  E-value=1.8e-06  Score=86.12  Aligned_cols=68  Identities=18%  Similarity=0.234  Sum_probs=54.3

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccc-ccCccChHHHHHHh-cCcEEEEeCCCCCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWTS-RGWAFVDVNYGGSTGLS  539 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~-~~~~~~~~~Q~~as-rGyaVl~~NyRGStGyG  539 (548)
                      +.+++++. || +|++++|.|.+        ...|+||++|||+... ....+....+.|++ +||+|+.+|||++.++.
T Consensus        64 ~~~~~~~~-~g-~i~~~~~~p~~--------~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~V~~~dyr~~p~~~  133 (326)
T 3ga7_A           64 RTCAVPTP-YG-DVTTRLYSPQP--------TSQATLYYLHGGGFILGNLDTHDRIMRLLARYTGCTVIGIDYSLSPQAR  133 (326)
T ss_dssp             EEEEECCT-TS-CEEEEEEESSS--------SCSCEEEEECCSTTTSCCTTTTHHHHHHHHHHHCSEEEEECCCCTTTSC
T ss_pred             EEEEeecC-CC-CeEEEEEeCCC--------CCCcEEEEECCCCcccCChhhhHHHHHHHHHHcCCEEEEeeCCCCCCCC
Confidence            88999997 88 89999999963        1239999999998543 23345556778888 89999999999988754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.22  E-value=0.0013  Score=64.76  Aligned_cols=203  Identities=12%  Similarity=0.103  Sum_probs=113.6

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCC--CC-CcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAG--DE-PSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD  164 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~--~~-~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~  164 (548)
                      ..+..+.++| +..++.....   ++...||.......  +. .+.+......+.       .-.|++++..|+ +...+
T Consensus        18 ~~V~~l~~~~~~~~~l~s~s~---D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~-------~~~~s~dg~~l~-s~s~D   86 (319)
T 3frx_A           18 GWVTSLATSAGQPNLLLSASR---DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ-------DCTLTADGAYAL-SASWD   86 (319)
T ss_dssp             SCEEEEEECSSCTTEEEEEET---TSEEEEEEEEEETTEEEEEEEEEECCSSCEE-------EEEECTTSSEEE-EEETT
T ss_pred             ceEEEEEccCCCccEEEEecC---CccEEEecCCCCCccccccceEEeCCcccEE-------EEEECCCCCEEE-EEeCC
Confidence            4566678888 5566555443   57777776643200  00 011111111110       124555565544 44467


Q ss_pred             CeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927          165 QRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (548)
Q Consensus       165 ~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~  243 (548)
                      +.|.+.++..  ++. +.+...    ...+....|+|+++.|+....+         ..|.++|+.+..   ...+....
T Consensus        87 ~~v~~wd~~~--~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~D---------~~i~vwd~~~~~---~~~~~~h~  148 (319)
T 3frx_A           87 KTLRLWDVAT--GETYQRFVGH----KSDVMSVDIDKKASMIISGSRD---------KTIKVWTIKGQC---LATLLGHN  148 (319)
T ss_dssp             SEEEEEETTT--TEEEEEEECC----SSCEEEEEECTTSCEEEEEETT---------SCEEEEETTSCE---EEEECCCS
T ss_pred             CEEEEEECCC--CCeeEEEccC----CCcEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCe---EEEEeccC
Confidence            7788888876  443 334332    2345667899999987765443         246677887655   45555445


Q ss_pred             CceeeeEECCCC------CEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEE
Q 008927          244 DFYAFPRMDPRG------ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV  317 (548)
Q Consensus       244 ~~~~~p~~SPDG------k~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~  317 (548)
                      +......|+|++      ..|+-.. .       ...|.+.++.. ++  ....+.+..    ..+....|+|||++++.
T Consensus       149 ~~v~~~~~~~~~~~~~~~~~l~s~~-~-------d~~i~~wd~~~-~~--~~~~~~~h~----~~v~~~~~sp~g~~l~s  213 (319)
T 3frx_A          149 DWVSQVRVVPNEKADDDSVTIISAG-N-------DKMVKAWNLNQ-FQ--IEADFIGHN----SNINTLTASPDGTLIAS  213 (319)
T ss_dssp             SCEEEEEECCC------CCEEEEEE-T-------TSCEEEEETTT-TE--EEEEECCCC----SCEEEEEECTTSSEEEE
T ss_pred             CcEEEEEEccCCCCCCCccEEEEEe-C-------CCEEEEEECCc-ch--hheeecCCC----CcEEEEEEcCCCCEEEE
Confidence            556667788854      3554332 1       34578888874 43  123344433    45778899999996665


Q ss_pred             EeCCCCeeeEEEEeccCCeeE
Q 008927          318 TDRKNGFWNLHKWIESNNEVL  338 (548)
Q Consensus       318 sd~~~g~~~Ly~~d~~~g~~~  338 (548)
                      ... +|  .|.++|+.+++..
T Consensus       214 ~~~-dg--~i~iwd~~~~~~~  231 (319)
T 3frx_A          214 AGK-DG--EIMLWNLAAKKAM  231 (319)
T ss_dssp             EET-TC--EEEEEETTTTEEE
T ss_pred             EeC-CC--eEEEEECCCCcEE
Confidence            544 44  4666777777643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.22  E-value=0.00066  Score=67.32  Aligned_cols=160  Identities=11%  Similarity=0.000  Sum_probs=94.3

Q ss_pred             CccCceEEcC----CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCC-CCccccceeeCCeeeEEEC---CEEEEE
Q 008927           89 KRLGGTAVDG----HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKE-YAVRTTAQEYGGGAFRIFG---DTVIFS  160 (548)
Q Consensus        89 ~~~~~~~~sp----g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~-~~~r~~v~~ygg~~~~~~~---~~i~F~  160 (548)
                      ..+..+.++|    ++..++....   +++..||.....  ...+.+.... ......+.   .-+|++++   +.++++
T Consensus        19 ~~v~~i~~~p~~~~~~~~~~~~~~---~~~v~vw~~~~~--~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~~~~l~~   90 (366)
T 3k26_A           19 QPLFGVQFNWHSKEGDPLVFATVG---SNRVTLYECHSQ--GEIRLLQSYVDADADENFY---TCAWTYDSNTSHPLLAV   90 (366)
T ss_dssp             SCEEEEEECTTCCTTSCEEEEEEE---TTEEEEEEECGG--GCEEEEEEEECSCTTCCEE---EEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEecccCCCCceEEEECC---CCEEEEEEcCCC--cEEEeeeeccccCCCCcEE---EEEeccCCCCCCCEEEE
Confidence            4566777886    4555555432   356667766433  2233332110 00011111   13688874   355666


Q ss_pred             eCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE
Q 008927          161 NYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV  238 (548)
Q Consensus       161 ~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~Sp-DG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~  238 (548)
                      ...++.|.+.++..  ++. ..+...    ...+..+.|+| +++.|+....+         ..|.++|+.+++   ...
T Consensus        91 ~~~dg~i~v~d~~~--~~~~~~~~~~----~~~i~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~---~~~  152 (366)
T 3k26_A           91 AGSRGIIRIINPIT--MQCIKHYVGH----GNAINELKFHPRDPNLLLSVSKD---------HALRLWNIQTDT---LVA  152 (366)
T ss_dssp             EETTCEEEEECTTT--CCEEEEEESC----CSCEEEEEECSSCTTEEEEEETT---------SCEEEEETTTTE---EEE
T ss_pred             ecCCCEEEEEEchh--ceEeeeecCC----CCcEEEEEECCCCCCEEEEEeCC---------CeEEEEEeecCe---EEE
Confidence            66778899999876  444 334322    23466788999 88877665433         358888998876   433


Q ss_pred             ee----ecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC
Q 008927          239 LV----SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE  282 (548)
Q Consensus       239 L~----~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~  282 (548)
                      ..    ..........|+|||+.|+....        ...|.+.++..
T Consensus       153 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------dg~i~i~d~~~  192 (366)
T 3k26_A          153 IFGGVEGHRDEVLSADYDLLGEKIMSCGM--------DHSLKLWRINS  192 (366)
T ss_dssp             EECSTTSCSSCEEEEEECTTSSEEEEEET--------TSCEEEEESCS
T ss_pred             EecccccccCceeEEEECCCCCEEEEecC--------CCCEEEEECCC
Confidence            32    23345677899999998875542        34688888873

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.22  E-value=0.00016  Score=72.25  Aligned_cols=239  Identities=10%  Similarity=0.070  Sum_probs=125.0

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCC--CCEEEEEEeccCCCCCCceeEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpD--G~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      +|++++..|+... .++.|.+.++..+..+. +.+...    ...+..+.|+|+  ++.|+....+         ..|.+
T Consensus        18 ~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s~~~d---------g~v~i   83 (379)
T 3jrp_A           18 VLDYYGKRLATCS-SDKTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTILASCSYD---------GKVLI   83 (379)
T ss_dssp             EECSSSSEEEEEE-TTSCEEEEEEETTEEEEEEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------SCEEE
T ss_pred             EEcCCCCEEEEEE-CCCcEEEEecCCCcceeeeEecCC----CCcEEEEEeCCCCCCCEEEEeccC---------CEEEE
Confidence            4666777666553 45656665654310222 233332    234567789987  8877665433         24777


Q ss_pred             EECCCCCccCcEEeeecCCceeeeEECCC--CCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCC
Q 008927          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (548)
Q Consensus       226 idl~~g~~~~~~~L~~~~~~~~~p~~SPD--Gk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~  303 (548)
                      +|+.+++......+......+....|+|+  |+.|+....        ...|.+.++...... ....+....    ..+
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--------d~~i~v~d~~~~~~~-~~~~~~~~~----~~v  150 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--------DGKVSVVEFKENGTT-SPIIIDAHA----IGV  150 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET--------TSEEEEEECCTTSCC-CEEEEECCT----TCE
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC--------CCcEEEEecCCCCce-eeEEecCCC----Cce
Confidence            78877741002233333445677899999  888875542        357889998753221 223343333    457


Q ss_pred             cCceECc-------------CCcEEEEEeCCCCeeeEEEEeccCCee--EeecccccccCCCcccccCcceeeeeecCCC
Q 008927          304 TEPKWSS-------------KGELFFVTDRKNGFWNLHKWIESNNEV--LAIYSLDAEFSRPLWVFGINSYEIIQSHGEK  368 (548)
Q Consensus       304 ~~~~wsp-------------DG~L~~~sd~~~g~~~Ly~~d~~~g~~--~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~  368 (548)
                      ..+.|+|             |+++++.... +|.  |+.+|+.+++.  ..+..... ...+     .....|.|   ++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~-h~~~-----v~~~~~sp---~~  218 (379)
T 3jrp_A          151 NSASWAPATIEEDGEHNGTKESRKFVTGGA-DNL--VKIWKYNSDAQTYVLESTLEG-HSDW-----VRDVAWSP---TV  218 (379)
T ss_dssp             EEEEECCCC----------CTTCEEEEEET-TSC--EEEEEEETTTTEEEEEEEECC-CSSC-----EEEEEECC---CC
T ss_pred             EEEEEcCccccccccccCCCCCCEEEEEeC-CCe--EEEEEecCCCcceeeEEEEec-ccCc-----EeEEEECC---CC
Confidence            7889999             6775555544 454  55555544431  11111000 0111     12245554   42


Q ss_pred             --CEEEEEEEeCCeEEEEEEECCCCc---eEee-cC--CCceeEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 008927          369 --NLIACSYRQNGRSYLGILDDFGHS---LSLL-DI--PFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLD  432 (548)
Q Consensus       369 --~~l~~~~~~~g~~~L~~~dl~~g~---~~~l-~~--~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~  432 (548)
                        +.++++...++.-.||  |+.++.   ...+ ..  ....+..+  +++++.|+....  .  ..|+++++.
T Consensus       219 ~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--d--g~i~iw~~~  286 (379)
T 3jrp_A          219 LLRSYLASVSQDRTCIIW--TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG--D--NKVTLWKEN  286 (379)
T ss_dssp             SSSEEEEEEETTSCEEEE--EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES--S--SSEEEEEEE
T ss_pred             CCCCeEEEEeCCCEEEEE--eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC--C--CcEEEEeCC
Confidence              5566666666765555  554542   2222 22  12234433  677776554433  2  445666554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.20  E-value=0.0002  Score=72.82  Aligned_cols=117  Identities=6%  Similarity=-0.093  Sum_probs=69.3

Q ss_pred             EECCEEEEEeCC----CCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEecc-CCCCCCceeEEEE
Q 008927          152 IFGDTVIFSNYK----DQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDR-RQDALNSTTEIVA  225 (548)
Q Consensus       152 ~~~~~i~F~~~~----~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~-~~~~~~~~~~l~~  225 (548)
                      |++.+||-.+..    ++.|+++|.+.  .+. ..|..+.     .- .+.+||||++++....-. +...++..+.|.+
T Consensus        42 pd~~~vyV~~~~~~~~~~~V~ViD~~t--~~v~~~I~vG~-----~P-~va~spDG~~lyVan~~~~r~~~G~~~~~Vsv  113 (386)
T 3sjl_D           42 PDARRVYVNDPAHFAAVTQQFVIDGEA--GRVIGMIDGGF-----LP-NPVVADDGSFIAHASTVFSRIARGERTDYVEV  113 (386)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTT--TEEEEEEEECS-----SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCCEEEEEcCcccCCCCEEEEEECCC--CeEEEEEECCC-----CC-cEEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence            567777777654    56999999986  443 3343331     12 378999999865543210 0000012357999


Q ss_pred             EECCCCCccCcEEeeecC-------CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc
Q 008927          226 IALNGQNIQEPKVLVSGS-------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD  285 (548)
Q Consensus       226 idl~~g~~~~~~~L~~~~-------~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~  285 (548)
                      +|..+.+.  ...|.-+.       ..-....+||||++|+ +....     ....|.++|++. ++
T Consensus       114 iD~~t~~v--~~~I~v~~g~r~~~g~~P~~~a~spDGk~ly-Van~~-----~~~~VsVID~~t-~~  171 (386)
T 3sjl_D          114 FDPVTLLP--TADIELPDAPRFLVGTYPWMTSLTPDGKTLL-FYQFS-----PAPAVGVVDLEG-KA  171 (386)
T ss_dssp             ECTTTCCE--EEEEEETTCCCCCBSCCGGGEEECTTSSEEE-EEECS-----SSCEEEEEETTT-TE
T ss_pred             EECCCCeE--EEEEECCCccccccCCCCceEEEcCCCCEEE-EEEcC-----CCCeEEEEECCC-Cc
Confidence            99999872  23332221       1123458999999875 55221     135799999984 54

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.17  E-value=0.00048  Score=75.90  Aligned_cols=192  Identities=15%  Similarity=0.124  Sum_probs=109.2

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      .|++++..|+ +...++.|.+.++..  +.. +.+...    ...+....|+|||+.|+..+.+         ..|.++|
T Consensus       437 ~~s~~g~~l~-sgs~Dg~v~vwd~~~--~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~s~D---------~~i~iwd  500 (694)
T 3dm0_A          437 VLSSDGQFAL-SGSWDGELRLWDLAA--GVSTRRFVGH----TKDVLSVAFSLDNRQIVSASRD---------RTIKLWN  500 (694)
T ss_dssp             EECTTSSEEE-EEETTSEEEEEETTT--TEEEEEEECC----SSCEEEEEECTTSSCEEEEETT---------SCEEEEC
T ss_pred             EECCCCCEEE-EEeCCCcEEEEECCC--CcceeEEeCC----CCCEEEEEEeCCCCEEEEEeCC---------CEEEEEE
Confidence            4555665554 444677888888875  433 344333    2345677899999988765443         2466677


Q ss_pred             CCCCCccCcEEeee----cCCceeeeEECCCCC--EEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCccc
Q 008927          228 LNGQNIQEPKVLVS----GSDFYAFPRMDPRGE--RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE  301 (548)
Q Consensus       228 l~~g~~~~~~~L~~----~~~~~~~p~~SPDGk--~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~  301 (548)
                      +.+..   ...+..    ..+.+....|+|++.  .|+-.+  .      ...|.+.|+.. ++.  ...+.+..    .
T Consensus       501 ~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~------d~~v~vwd~~~-~~~--~~~~~~h~----~  562 (694)
T 3dm0_A          501 TLGEC---KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS--W------DKTVKVWNLSN-CKL--RSTLAGHT----G  562 (694)
T ss_dssp             TTSCE---EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEE--T------TSCEEEEETTT-CCE--EEEECCCS----S
T ss_pred             CCCCc---ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEe--C------CCeEEEEECCC-CcE--EEEEcCCC----C
Confidence            76553   333322    123456778999984  344222  1      24688889874 432  33444433    4


Q ss_pred             CCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeE
Q 008927          302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS  381 (548)
Q Consensus       302 ~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~  381 (548)
                      .+....|+|||++++.... +|  .|.++|+.+++.......    ...     .....++|   ++ .+++... ++  
T Consensus       563 ~v~~v~~spdg~~l~sg~~-Dg--~i~iwd~~~~~~~~~~~~----~~~-----v~~~~~sp---~~-~~l~~~~-~~--  623 (694)
T 3dm0_A          563 YVSTVAVSPDGSLCASGGK-DG--VVLLWDLAEGKKLYSLEA----NSV-----IHALCFSP---NR-YWLCAAT-EH--  623 (694)
T ss_dssp             CEEEEEECTTSSEEEEEET-TS--BCEEEETTTTEEEECCBC----SSC-----EEEEEECS---SS-SEEEEEE-TT--
T ss_pred             CEEEEEEeCCCCEEEEEeC-CC--eEEEEECCCCceEEEecC----CCc-----EEEEEEcC---CC-cEEEEEc-CC--
Confidence            6778899999996655544 44  455667767654322211    111     12245553   44 4444443 33  


Q ss_pred             EEEEEECCCCce
Q 008927          382 YLGILDDFGHSL  393 (548)
Q Consensus       382 ~L~~~dl~~g~~  393 (548)
                      .|.++|+++++.
T Consensus       624 ~i~iwd~~~~~~  635 (694)
T 3dm0_A          624 GIKIWDLESKSI  635 (694)
T ss_dssp             EEEEEETTTTEE
T ss_pred             CEEEEECCCCCC
Confidence            277788887754

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.17  E-value=0.00035  Score=71.88  Aligned_cols=170  Identities=11%  Similarity=0.145  Sum_probs=91.7

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE--------eeecCCceeeeEECCCC-CEEEEEE
Q 008927          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV--------LVSGSDFYAFPRMDPRG-ERMAWIE  262 (548)
Q Consensus       192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~--------L~~~~~~~~~p~~SPDG-k~La~~~  262 (548)
                      .+..+.|+|||+.|+.. .+         ..|.++|+.++..  ...        +......+....|+||| +.|+...
T Consensus       179 ~v~~~~~~~~~~~l~s~-~d---------~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~  246 (447)
T 3dw8_B          179 HINSISINSDYETYLSA-DD---------LRINLWHLEITDR--SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS  246 (447)
T ss_dssp             CCCEEEECTTSSEEEEE-CS---------SEEEEEETTEEEE--EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEe-CC---------CeEEEEECCCCCc--eeeeeecccccccccCcceEEEEECCCCCcEEEEEe
Confidence            35567899999987663 32         3688888884320  211        11233446778999999 7776544


Q ss_pred             ecCCCCCCCCceEEEEEecCCCce-e-eeEEEcCCCCCccc------------CCcCceECcCCcEEEEEeCCCCeeeEE
Q 008927          263 WHHPNMPWDKAELWVGYISENGDV-Y-KRVCVAGFDPTIVE------------SPTEPKWSSKGELFFVTDRKNGFWNLH  328 (548)
Q Consensus       263 ~~~~~~p~~~~~L~v~~~~~~g~~-~-~~~~l~~~~~~~~~------------~~~~~~wspDG~L~~~sd~~~g~~~Ly  328 (548)
                      .        ...|.+.|+.. ++. . ....+....    .            .+..+.|+|||++++....    ..|.
T Consensus       247 ~--------dg~i~iwd~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~v~  309 (447)
T 3dw8_B          247 S--------KGTIRLCDMRA-SALCDRHSKLFEEPE----DPSNRSFFSEIISSISDVKFSHSGRYMMTRDY----LSVK  309 (447)
T ss_dssp             T--------TSCEEEEETTT-CSSSCTTCEEECCC---------CCHHHHHTTCEEEEEECTTSSEEEEEES----SEEE
T ss_pred             C--------CCeEEEEECcC-CccccceeeEeccCC----CccccccccccCceEEEEEECCCCCEEEEeeC----CeEE
Confidence            2        34688889874 331 0 023343322    2            5678899999995554432    3567


Q ss_pred             EEeccC-CeeEeecccccccCCC-------cccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEee
Q 008927          329 KWIESN-NEVLAIYSLDAEFSRP-------LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL  396 (548)
Q Consensus       329 ~~d~~~-g~~~~l~~~~~d~~~p-------~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l  396 (548)
                      .+|+.. ++..............       .-........|.|   +++.| ++...++  .|+++|+.+++...+
T Consensus       310 iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~---~~~~l-~s~s~dg--~v~iwd~~~~~~~~~  379 (447)
T 3dw8_B          310 VWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG---SDSVV-MTGSYNN--FFRMFDRNTKRDITL  379 (447)
T ss_dssp             EEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT---TSSEE-EEECSTT--EEEEEETTTCCEEEE
T ss_pred             EEeCCCCccccceeeccccccccccccccccccccceEEEECC---CCCEE-EEeccCC--EEEEEEcCCCcceee
Confidence            777754 4432111110000000       0000011145654   66655 4444455  466778888776543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=98.17  E-value=0.00081  Score=69.05  Aligned_cols=240  Identities=8%  Similarity=0.035  Sum_probs=129.6

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +|+. ++.|+...  ++.||+-+..+  ++..++....+ ....+..+.|+|||+.|+....+         ..|.++|+
T Consensus       112 ~wS~-~n~lAvgl--d~tV~lWd~~t--g~~~~~~~~~~-~~~~V~sv~fspdg~~lasgs~D---------g~v~iWd~  176 (420)
T 4gga_A          112 DWSS-GNVLAVAL--DNSVYLWSASS--GDILQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSS---------AEVQLWDV  176 (420)
T ss_dssp             EECT-TSEEEEEE--TTEEEEEETTT--CCEEEEEECCS-TTCCEEEEEECTTSSEEEEEETT---------SCEEEEET
T ss_pred             EECC-CCEEEEEe--CCEEEEEECCC--CCEEEEEEecC-CCCcEEEEEECCCCCEEEEEECC---------CeEEEEEc
Confidence            4553 34566555  66788889887  66654432211 12346778899999988765433         35788899


Q ss_pred             CCCCccCcEEeeec-CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          229 NGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       229 ~~g~~~~~~~L~~~-~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      .+++   ......+ .....  .+++|++.|+-.. .       ...+++.+......  ....+.+..    ..+....
T Consensus       177 ~~~~---~~~~~~~h~~~v~--~~s~~~~~l~sgs-~-------d~~i~~~d~~~~~~--~~~~~~~h~----~~~~~~~  237 (420)
T 4gga_A          177 QQQK---RLRNMTSHSARVG--SLSWNSYILSSGS-R-------SGHIHHHDVRVAEH--HVATLSGHS----QEVCGLR  237 (420)
T ss_dssp             TTTE---EEEEECCCSSCEE--EEEEETTEEEEEE-T-------TSEEEEEETTSSSC--EEEEEECCS----SCEEEEE
T ss_pred             CCCc---EEEEEeCCCCceE--EEeeCCCEEEEEe-C-------CCceeEeeecccce--eeEEecccc----cceeeee
Confidence            8886   3333322 22233  4566788776433 1       34677777764222  233344433    4566788


Q ss_pred             ECcCCcEEEEEeCCCCeeeEEEEeccCCeeE--eecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVL--AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (548)
Q Consensus       308 wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~--~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~  385 (548)
                      |+|+|++++.... ++.  +..++..+++..  .+... .....+     .....|.|   .+..++++..-.....|.+
T Consensus       238 ~~~~g~~l~s~~~-D~~--v~i~~~~~~~~~~~~~~~~-~~~~~~-----V~~~~~~p---~~~~~la~~~gs~D~~I~i  305 (420)
T 4gga_A          238 WAPDGRHLASGGN-DNL--VNVWPSAPGEGGWVPLQTF-TQHQGA-----VKAVAWCP---WQSNVLATGGGTSDRHIRI  305 (420)
T ss_dssp             ECTTSSEEEEEET-TSC--EEEEESSCCSSCSCCSEEE-CCCSSC-----EEEEEECT---TCTTEEEEEECTTTCEEEE
T ss_pred             ecCCCCeeeeeec-ccc--ceEEeeccccccceeeeee-cccCCc-----eeeeeeCC---CcccEEEEEeecCCCEEEE
Confidence            9999995555443 443  444555444321  11100 000111     11233443   4555655544222345777


Q ss_pred             EECCCCceEe-ecCCCceeEee-eecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          386 LDDFGHSLSL-LDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       386 ~dl~~g~~~~-l~~~~~~~~~~-s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      .|+.+++... +.......... +++++.++.....  ....|+++|..+++.
T Consensus       306 wd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~--~d~~I~iwd~~~~~~  356 (420)
T 4gga_A          306 WNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF--AQNQLVIWKYPTMAK  356 (420)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECT--TTCCEEEEETTTCCE
T ss_pred             EeCCccccceeeccccceeeeeecCCCCeEEEEEec--CCCEEEEEECCCCcE
Confidence            8988886543 33322222222 6677777655432  235788889877763

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.17  E-value=0.00055  Score=76.40  Aligned_cols=233  Identities=10%  Similarity=0.022  Sum_probs=134.3

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc-c
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-Q  234 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~-~  234 (548)
                      .|+|.+  ...|.++++++  .+...|....    .....+.+++..+.|+++ ...       ...|+++++++... .
T Consensus       397 ~Ll~an--~~~Ir~i~l~~--~~~~~l~~~~----~~~~gl~~d~~~~~lY~s-D~~-------~~~I~~~~l~g~~~~~  460 (791)
T 3m0c_C          397 YLFFTN--RHEVRKMTLDR--SEYTSLIPNL----RNVVALDTEVASNRIYWS-DLS-------QRMICSTQLDRAHGVS  460 (791)
T ss_dssp             EEEEEC--BSSEEEECTTS--CCCEEEECSC----SSEEEEEEETTTTEEEEE-ETT-------TTEEEEEEC-------
T ss_pred             cccccc--ccceeEeeccC--CcceeeecCC----CceEEEeecccCCeeEEe-ecc-------ceeEEEEeccCCCCCc
Confidence            577776  45699999987  5566665431    234456788877877664 322       24799999987310 0


Q ss_pred             CcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc
Q 008927          235 EPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (548)
Q Consensus       235 ~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~  313 (548)
                      ..+.+.. +...-...++.+.++.|+|...       ....|+++++++ ..  ...++....    .....++..|.+.
T Consensus       461 ~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~-------~~~~I~v~~ldG-~~--~~~l~~~~l----~~P~gIaVDp~~g  526 (791)
T 3m0c_C          461 SYDTVISRDIQAPDGLAVDWIHSNIYWTDS-------VLGTVSVADTKG-VK--RKTLFRENG----SKPRAIVVDPVHG  526 (791)
T ss_dssp             -CEEEECSSCSCCCEEEEETTTTEEEEEET-------TTTEEEEEETTS-SS--EEEEEECTT----CCEEEEEEETTTT
T ss_pred             ceeEEEecCCCCcceeeeeecCCcEEEEec-------CCCeEEEEeCCC-Ce--EEEEEeCCC----CCcceEEEecCCC
Confidence            0344443 3333345678888988887652       245899999873 22  123333221    2345567788755


Q ss_pred             EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce
Q 008927          314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (548)
Q Consensus       314 L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~  393 (548)
                      .+|.+|. .....|+++++++...+.|...  .+..|   .+   +++.+   .++.||++-  .+...|+++++++...
T Consensus       527 ~LYwtD~-g~~~~I~~~~~dG~~~~~lv~~--~l~~P---~G---LavD~---~~~~LYwaD--~~~~~I~~~d~dG~~~  592 (791)
T 3m0c_C          527 FMYWTDW-GTPAKIKKGGLNGVDIYSLVTE--NIQWP---NG---ITLDL---LSGRLYWVD--SKLHSISSIDVNGGNR  592 (791)
T ss_dssp             EEEEEEC-SSSCEEEEEETTSCCEEEEECS--SCSCE---EE---EEEET---TTTEEEEEE--TTTTEEEEEETTSCSC
T ss_pred             CEEEecC-CCCCeEEEEecCCCceEEEEeC--CCCCc---eE---EEEec---CCCeEEEEe--CCCCcEEEEecCCCce
Confidence            4445554 2225799999977665555431  11222   11   34432   577888763  3456799999987766


Q ss_pred             EeecCC---CceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          394 SLLDIP---FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       394 ~~l~~~---~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      +.+...   ...-.+++..+++||++-.   ....|++++..+|+
T Consensus       593 ~~v~~~~~~l~~P~glav~~~~lYwtD~---~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          593 KTILEDEKRLAHPFSLAVFEDKVFWTDI---INEAIFSANRLTGS  634 (791)
T ss_dssp             EEEEECTTTTSSEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred             EEEecCCCccCCCCEEEEeCCEEEEEEC---CCCEEEEEeCCCCc
Confidence            655321   2222344567777766542   34688888865554

>2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A

Probab=98.16  E-value=3.1e-06  Score=83.65  Aligned_cols=72  Identities=15%  Similarity=0.094  Sum_probs=56.7

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccc-cccCccChHHHHHHhc-CcEEEEeCCCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSR-GWAFVDVNYGGSTG  537 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~-~~~~~~~~~~Q~~asr-GyaVl~~NyRGStG  537 (548)
                      ..+.+++++. || ++++++|.|.+.      .++.|+||++|||+.. .....|....+.|+.+ ||.|+.+||||..+
T Consensus        47 ~~~~~~i~~~-~g-~l~~~~~~P~~~------~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~~~  118 (310)
T 2hm7_A           47 EVREFDMDLP-GR-TLKVRMYRPEGV------EPPYPALVYYHGGSWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPE  118 (310)
T ss_dssp             EEEEEEEEET-TE-EEEEEEEECTTC------CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTT
T ss_pred             eEEEEEeccC-CC-eEEEEEEecCCC------CCCCCEEEEECCCccccCChhHhHHHHHHHHHhcCCEEEEeCCCCCCC
Confidence            4577889987 77 999999999641      2457999999999853 3344566677889886 99999999999887


Q ss_pred             CC
Q 008927          538 LS  539 (548)
Q Consensus       538 yG  539 (548)
                      ++
T Consensus       119 ~~  120 (310)
T 2hm7_A          119 HK  120 (310)
T ss_dssp             SC
T ss_pred             CC
Confidence            64

>2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36

Probab=98.16  E-value=3.7e-06  Score=78.09  Aligned_cols=72  Identities=11%  Similarity=0.119  Sum_probs=54.2

Q ss_pred             cCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccc---ccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE---ARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       459 ~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~---~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ...+.+++++. || +++++++.|.+..     .++.|+||++||+|...   ....|....+.|+++||.|+.+|+||.
T Consensus         8 ~~~~~~~~~~~-~g-~~~~~~~~p~~~~-----~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~   80 (220)
T 2fuk_A            8 TESAALTLDGP-VG-PLDVAVDLPEPDV-----AVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSV   80 (220)
T ss_dssp             SSCEEEEEEET-TE-EEEEEEECCCTTS-----CCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTS
T ss_pred             ccceEEEEeCC-CC-eEEEEEEeCCCCC-----ccccCEEEEECCCCCcCCcccchHHHHHHHHHHHCCCeEEEEecCCC
Confidence            35688999997 88 8999999996410     14579999999987422   112244567889999999999999986


Q ss_pred             CC
Q 008927          536 TG  537 (548)
Q Consensus       536 tG  537 (548)
                      ..
T Consensus        81 g~   82 (220)
T 2fuk_A           81 GT   82 (220)
T ss_dssp             TT
T ss_pred             CC
Confidence            44

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.14  E-value=5.1e-05  Score=75.09  Aligned_cols=231  Identities=11%  Similarity=-0.001  Sum_probs=129.6

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCC----ceecCCCCCCCCceecceeeCCCCC-EEEEEEeccCCCCCCceeEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFN-RYVTVREDRRQDALNSTTEI  223 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~----~~~lT~~~~~~~~~~~~~~~SpDG~-~i~~v~~~~~~~~~~~~~~l  223 (548)
                      +|++++..|+... .++.|++.++..  ++    .+.+...    ...+..+.|+|+|+ .|+....+         ..|
T Consensus        18 ~~s~~~~~l~~~~-~d~~v~iw~~~~--~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~d---------g~i   81 (342)
T 1yfq_A           18 KIIPSKSLLLITS-WDGSLTVYKFDI--QAKNVDLLQSLRY----KHPLLCCNFIDNTDLQIYVGTVQ---------GEI   81 (342)
T ss_dssp             EEEGGGTEEEEEE-TTSEEEEEEEET--TTTEEEEEEEEEC----SSCEEEEEEEESSSEEEEEEETT---------SCE
T ss_pred             EEcCCCCEEEEEc-CCCeEEEEEeCC--CCccccceeeeec----CCceEEEEECCCCCcEEEEEcCC---------CeE
Confidence            5777777666554 567777777765  44    3333322    23466778999999 77665433         368


Q ss_pred             EEEEC-CCCCccCcEEeee--cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCC--------CceeeeEEE
Q 008927          224 VAIAL-NGQNIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN--------GDVYKRVCV  292 (548)
Q Consensus       224 ~~idl-~~g~~~~~~~L~~--~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~--------g~~~~~~~l  292 (548)
                      .++|+ .+++   ...+..  ....+....|+| ++.|+....        ...|.+.++...        ++  ....+
T Consensus        82 ~~wd~~~~~~---~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~--------d~~i~iwd~~~~~~~~~~~~~~--~~~~~  147 (342)
T 1yfq_A           82 LKVDLIGSPS---FQALTNNEANLGICRICKYG-DDKLIAASW--------DGLIEVIDPRNYGDGVIAVKNL--NSNNT  147 (342)
T ss_dssp             EEECSSSSSS---EEECBSCCCCSCEEEEEEET-TTEEEEEET--------TSEEEEECHHHHTTBCEEEEES--CSSSS
T ss_pred             EEEEeccCCc---eEeccccCCCCceEEEEeCC-CCEEEEEcC--------CCeEEEEcccccccccccccCC--eeeEE
Confidence            89999 8887   666665  555577789999 888875542        346888887630        21  01112


Q ss_pred             cCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccC-Cee--EeecccccccCCCcccccCcceeeeeecCC-C
Q 008927          293 AGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN-NEV--LAIYSLDAEFSRPLWVFGINSYEIIQSHGE-K  368 (548)
Q Consensus       293 ~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~-g~~--~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d-~  368 (548)
                      . ..    ..+..+.|+|++ ++.. .. ++  .|..+++.+ ++.  ......   ...+     .....+.    . +
T Consensus       148 ~-~~----~~v~~~~~~~~~-l~~~-~~-d~--~i~i~d~~~~~~~~~~~~~~~---~~~~-----i~~i~~~----~~~  205 (342)
T 1yfq_A          148 K-VK----NKIFTMDTNSSR-LIVG-MN-NS--QVQWFRLPLCEDDNGTIEESG---LKYQ-----IRDVALL----PKE  205 (342)
T ss_dssp             S-SC----CCEEEEEECSSE-EEEE-ES-TT--EEEEEESSCCTTCCCEEEECS---CSSC-----EEEEEEC----SGG
T ss_pred             e-eC----CceEEEEecCCc-EEEE-eC-CC--eEEEEECCccccccceeeecC---CCCc-----eeEEEEC----CCC
Confidence            2 11    456778899887 4433 33 33  567777766 432  111110   0011     1123443    3 3


Q ss_pred             CEEEEEEEeCCeEEEEEEECC-----CCceEeecCCCc---------eeEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 008927          369 NLIACSYRQNGRSYLGILDDF-----GHSLSLLDIPFT---------DIDNI--TLGNDCLFVEGASGVEPSSVAKVTLD  432 (548)
Q Consensus       369 ~~l~~~~~~~g~~~L~~~dl~-----~g~~~~l~~~~~---------~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~  432 (548)
                      +.++++...++.-.|+.++..     ......+.....         .+..+  +++++.|+ +++.   ...|+++|+.
T Consensus       206 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~---dg~i~vwd~~  281 (342)
T 1yfq_A          206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY-TAGS---DGIISCWNLQ  281 (342)
T ss_dssp             GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE-EEET---TSCEEEEETT
T ss_pred             CCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEE-EecC---CceEEEEcCc
Confidence            445555666777666666544     122333332211         34443  56666554 3332   3578899988


Q ss_pred             CCc
Q 008927          433 DHK  435 (548)
Q Consensus       433 ~~~  435 (548)
                      +++
T Consensus       282 ~~~  284 (342)
T 1yfq_A          282 TRK  284 (342)
T ss_dssp             TTE
T ss_pred             cHh
Confidence            775

>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41

Probab=98.14  E-value=3.1e-06  Score=86.60  Aligned_cols=68  Identities=16%  Similarity=0.132  Sum_probs=53.4

Q ss_pred             cCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       459 ~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG  537 (548)
                      ...|.+++++  ||.+|+++++.|.+       .++.|+||++||+..... ..+. ..+.|+++||+|+.+|+||...
T Consensus       125 ~~~~~v~~~~--dg~~i~~~l~~p~~-------~~~~P~vl~~hG~~~~~~-~~~~-~~~~l~~~G~~v~~~d~rG~G~  192 (386)
T 2jbw_A          125 PPAERHELVV--DGIPMPVYVRIPEG-------PGPHPAVIMLGGLESTKE-ESFQ-MENLVLDRGMATATFDGPGQGE  192 (386)
T ss_dssp             SCEEEEEEEE--TTEEEEEEEECCSS-------SCCEEEEEEECCSSCCTT-TTHH-HHHHHHHTTCEEEEECCTTSGG
T ss_pred             CCeEEEEEEe--CCEEEEEEEEcCCC-------CCCCCEEEEeCCCCccHH-HHHH-HHHHHHhCCCEEEEECCCCCCC
Confidence            3578899998  79999999999964       246799999888864432 2233 3899999999999999999643

>1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A*

Probab=98.14  E-value=4.1e-06  Score=82.63  Aligned_cols=80  Identities=15%  Similarity=0.108  Sum_probs=60.0

Q ss_pred             cCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccC-----ccChHHHHHHhc----CcEEEE
Q 008927          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-----ILNLSIQYWTSR----GWAFVD  529 (548)
Q Consensus       459 ~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~-----~~~~~~Q~~asr----GyaVl~  529 (548)
                      .+.+.++|++. +| ++..++|.|.+  |++  ++++|+||++|||+.....+     .+....+.|+++    ||+|+.
T Consensus        39 g~~~~~~~~s~-~~-~~~~~vy~P~~--~~~--~~~~Pvlv~lHG~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ivv~  112 (297)
T 1gkl_A           39 GRIVKETYTGI-NG-TKSLNVYLPYG--YDP--NKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVT  112 (297)
T ss_dssp             CEEEEEEEEET-TE-EEEEEEEECTT--CCT--TSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHTTSSCCEEEEE
T ss_pred             ceEEEEEEEcC-CC-EEEEEEEeCCC--CCC--CCCCCEEEEECCCCCCcchhhcccchHHHHHHHHHHcCCCCCEEEEE
Confidence            45678999997 76 89999999965  543  57899999999998754321     111234567776    499999


Q ss_pred             eCCCCCCCCChhhhh
Q 008927          530 VNYGGSTGLSSVPST  544 (548)
Q Consensus       530 ~NyRGStGyG~~f~~  544 (548)
                      ||+||+.+.+.+|.+
T Consensus       113 pd~~~~~~~~~~~~~  127 (297)
T 1gkl_A          113 PTFNGGNCTAQNFYQ  127 (297)
T ss_dssp             CCSCSTTCCTTTHHH
T ss_pred             ecCcCCccchHHHHH
Confidence            999999888877754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.12  E-value=0.00028  Score=72.88  Aligned_cols=201  Identities=10%  Similarity=0.029  Sum_probs=108.9

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCC---------CCCceecCCCCCCCCceecceeeCCCCC-EEEEEEeccCCCCCC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSK---------DSSPLPITPDYGEPLVSYADGIFDPRFN-RYVTVREDRRQDALN  218 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~---------~~~~~~lT~~~~~~~~~~~~~~~SpDG~-~i~~v~~~~~~~~~~  218 (548)
                      +|+++++.++++...++.|++.++...         ......+...    ......+.|+|+++ .|+....+       
T Consensus       135 ~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~~d-------  203 (430)
T 2xyi_A          135 RYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH----QKEGYGLSWNPNLNGYLLSASDD-------  203 (430)
T ss_dssp             EEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC----SSCCCCEEECTTSTTEEEEECTT-------
T ss_pred             EECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC----CCCeEEEEeCCCCCCeEEEEeCC-------
Confidence            455544567777666787877777531         0111222222    12355678999998 55443222       


Q ss_pred             ceeEEEEEECCCCCcc-----CcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEc
Q 008927          219 STTEIVAIALNGQNIQ-----EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA  293 (548)
Q Consensus       219 ~~~~l~~idl~~g~~~-----~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~  293 (548)
                        ..|.++|+.++...     ....+......+....|+|++..++.....       ...|++.|+...........+.
T Consensus       204 --g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~-------dg~i~i~d~~~~~~~~~~~~~~  274 (430)
T 2xyi_A          204 --HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD-------DQKLMIWDTRNNNTSKPSHTVD  274 (430)
T ss_dssp             --SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET-------TSEEEEEETTCSCSSSCSEEEE
T ss_pred             --CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC-------CCeEEEEECCCCCCCcceeEee
Confidence              35888888874310     012232333346678899955544434422       4579999998532111223333


Q ss_pred             CCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCC-e-eEeecccccccCCCcccccCcceeeeeecCCCCE
Q 008927          294 GFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN-E-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNL  370 (548)
Q Consensus       294 ~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g-~-~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~  370 (548)
                      ...    ..+..+.|+|+++ ++++... +|.  |.++|+... + ...+...    ..+     .....|.|   +++.
T Consensus       275 ~~~----~~v~~i~~~p~~~~~l~tg~~-dg~--v~vwd~~~~~~~~~~~~~h----~~~-----v~~i~~sp---~~~~  335 (430)
T 2xyi_A          275 AHT----AEVNCLSFNPYSEFILATGSA-DKT--VALWDLRNLKLKLHSFESH----KDE-----IFQVQWSP---HNET  335 (430)
T ss_dssp             CCS----SCEEEEEECSSCTTEEEEEET-TSE--EEEEETTCTTSCSEEEECC----SSC-----EEEEEECS---SCTT
T ss_pred             cCC----CCeEEEEeCCCCCCEEEEEeC-CCe--EEEEeCCCCCCCeEEeecC----CCC-----EEEEEECC---CCCC
Confidence            332    4577889999998 7777665 554  556666542 2 2222211    111     12245654   6667


Q ss_pred             EEEEEEeCCeEEEEEEECCC
Q 008927          371 IACSYRQNGRSYLGILDDFG  390 (548)
Q Consensus       371 l~~~~~~~g~~~L~~~dl~~  390 (548)
                      ++++...++.-  .++|+..
T Consensus       336 ~l~s~~~d~~i--~iwd~~~  353 (430)
T 2xyi_A          336 ILASSGTDRRL--HVWDLSK  353 (430)
T ss_dssp             EEEEEETTSCC--EEEEGGG
T ss_pred             EEEEEeCCCcE--EEEeCCC
Confidence            77777666654  4455544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.12  E-value=0.0017  Score=70.65  Aligned_cols=231  Identities=14%  Similarity=0.121  Sum_probs=138.0

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccC
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~  235 (548)
                      .|+|++  ...|.++++++  .+...+.+..  .-.....+.|+++++.|+++ +..       ...|++++++++.   
T Consensus         8 ~Ll~s~--~~~I~~i~l~~--~~~~~~~~~~--~~~~~~~l~~d~~~~~lywt-D~~-------~~~I~r~~~~g~~---   70 (628)
T 4a0p_A            8 FLLFSR--RADIRRISLET--NNNNVAIPLT--GVKEASALDFDVTDNRIYWT-DIS-------LKTISRAFMNGSA---   70 (628)
T ss_dssp             EEEEEE--TTEEEEEESSC--TTCEEECCCC--SCSCEEEEEEETTTTEEEEE-ETT-------TTEEEEEETTSCS---
T ss_pred             EEEEEe--CCcEEEEECCC--CCcceEEEcC--CCCceEEEEEECCCCEEEEE-ECC-------CCeEEEEECCCCC---
Confidence            688886  66899999987  4444433321  01134467799988887664 332       2579999999876   


Q ss_pred             cEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcE
Q 008927          236 PKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL  314 (548)
Q Consensus       236 ~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L  314 (548)
                      .+.+.. +...-...++.+.++.|+|...       ....|.++++++ ..  ...++...-    ......+..|....
T Consensus        71 ~~~v~~~g~~~P~GlAvD~~~~~LY~tD~-------~~~~I~v~~~dG-~~--~~~l~~~~l----~~P~~iavdp~~G~  136 (628)
T 4a0p_A           71 LEHVVEFGLDYPEGMAVDWLGKNLYWADT-------GTNRIEVSKLDG-QH--RQVLVWKDL----DSPRALALDPAEGF  136 (628)
T ss_dssp             CEEEECSSCSCCCEEEEETTTTEEEEEET-------TTTEEEEEETTS-TT--CEEEECSSC----CCEEEEEEETTTTE
T ss_pred             cEEEEeCCCCCcceEEEEeCCCEEEEEEC-------CCCEEEEEecCC-Cc--EEEEEeCCC----CCcccEEEccCCCe
Confidence            555543 3222344567777888887642       246899999873 22  122332221    23455677775444


Q ss_pred             EEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE
Q 008927          315 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS  394 (548)
Q Consensus       315 ~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~  394 (548)
                      +|.+|. .....|+++++++...+.+..   ....|   .   .+++.+   ++++||++-  .+...|+++|++++..+
T Consensus       137 lY~tD~-g~~~~I~r~~~dG~~~~~l~~---~~~~P---~---GlalD~---~~~~LY~aD--~~~~~I~~~d~dG~~~~  201 (628)
T 4a0p_A          137 MYWTEW-GGKPKIDRAAMDGSERTTLVP---NVGRA---N---GLTIDY---AKRRLYWTD--LDTNLIESSNMLGLNRE  201 (628)
T ss_dssp             EEEEEC-SSSCEEEEEETTSCSCEEEEC---SCSSE---E---EEEEET---TTTEEEEEE--TTTTEEEEEETTSCSCE
T ss_pred             EEEeCC-CCCCEEEEEeCCCCceEEEEC---CCCCc---c---eEEEcc---ccCEEEEEE--CCCCEEEEEcCCCCceE
Confidence            444564 235689999997776665542   12222   1   234432   578888754  34557899999876655


Q ss_pred             eecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          395 LLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       395 ~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      .+......-.+++.+++.+|++-   .....|+++|..+++
T Consensus       202 v~~~~l~~P~glav~~~~ly~tD---~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          202 VIADDLPHPFGLTQYQDYIYWTD---WSRRSIERANKTSGQ  239 (628)
T ss_dssp             EEEECCSCEEEEEEETTEEEEEE---TTTTEEEEEETTTCC
T ss_pred             EeeccCCCceEEEEECCEEEEec---CCCCEEEEEECCCCC
Confidence            44333223334566677776653   234688899865554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.11  E-value=0.003  Score=65.00  Aligned_cols=156  Identities=10%  Similarity=-0.043  Sum_probs=81.9

Q ss_pred             EECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCC-C----CCCc-eecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927          152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY-G----EPLV-SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       152 ~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~-~----~~~~-~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      .+.++|+-...++.+||++|...+...++.+..-+ +    .... +-.....+|||  |+.......  .++....|++
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~--~g~~~g~v~v  168 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNE--EGEGPGGILM  168 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEET--TSCSCCEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCc--CCCCCCeEEE
Confidence            66777888887888999999864212333221110 0    0001 11224588999  333222111  1234578999


Q ss_pred             EECCCCCccCcEEeeec--C-CceeeeEECCCCCEEEEEE-ecCCC------CC-----CCCceEEEEEecCCCceeeeE
Q 008927          226 IALNGQNIQEPKVLVSG--S-DFYAFPRMDPRGERMAWIE-WHHPN------MP-----WDKAELWVGYISENGDVYKRV  290 (548)
Q Consensus       226 idl~~g~~~~~~~L~~~--~-~~~~~p~~SPDGk~La~~~-~~~~~------~p-----~~~~~L~v~~~~~~g~~~~~~  290 (548)
                      +|.++++.  ...+..+  + .+.....|+||++.++ ++ |..|.      ++     ....+|.++|++. +++.  .
T Consensus       169 lD~~T~~v--~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-~k~~--~  242 (462)
T 2ece_A          169 LDHYSFEP--LGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-RKRI--H  242 (462)
T ss_dssp             ECTTTCCE--EEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-TEEE--E
T ss_pred             EECCCCeE--EEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCC-CcEe--e
Confidence            99999872  2334322  2 2233568999999554 44 32211      01     1257899999984 5432  2


Q ss_pred             EEcCCCCCcccCCcC--ceECcCCc-EEEEEe
Q 008927          291 CVAGFDPTIVESPTE--PKWSSKGE-LFFVTD  319 (548)
Q Consensus       291 ~l~~~~~~~~~~~~~--~~wspDG~-L~~~sd  319 (548)
                      .+.-+..+  .....  +.++|||+ .|+...
T Consensus       243 tI~vg~~g--~~P~~i~f~~~Pdg~~aYV~~e  272 (462)
T 2ece_A          243 SLTLGEEN--RMALELRPLHDPTKLMGFINMV  272 (462)
T ss_dssp             EEESCTTE--EEEEEEEECSSTTCCEEEEEEE
T ss_pred             EEecCCCC--CccceeEeeECCCCCEEEEEEe
Confidence            22221101  11222  34599999 555454

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.11  E-value=0.00064  Score=67.74  Aligned_cols=149  Identities=11%  Similarity=0.028  Sum_probs=90.7

Q ss_pred             CCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCC
Q 008927          154 GDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (548)
Q Consensus       154 ~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~  232 (548)
                      ++.|+ +...++.|.+.++..  ++. ..+...    ...+..+.|+||++.|+....+         ..|.++|+.++.
T Consensus       154 ~~~l~-s~s~d~~i~~wd~~~--~~~~~~~~~h----~~~v~~~~~~~~~~~l~sg~~d---------~~v~~wd~~~~~  217 (340)
T 1got_B          154 DNQIV-TSSGDTTCALWDIET--GQQTTTFTGH----TGDVMSLSLAPDTRLFVSGACD---------ASAKLWDVREGM  217 (340)
T ss_dssp             TTEEE-EEETTSCEEEEETTT--TEEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTCS
T ss_pred             CCcEE-EEECCCcEEEEECCC--CcEEEEEcCC----CCceEEEEECCCCCEEEEEeCC---------CcEEEEECCCCe
Confidence            34444 344567788888875  433 333332    2345677899999977665433         357888998886


Q ss_pred             ccCcEE-eeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcC
Q 008927          233 IQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK  311 (548)
Q Consensus       233 ~~~~~~-L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspD  311 (548)
                         ... +......+....|+|||+.|+-.+.        ...|.+.|+.. ++  ....+......  ..+....|+||
T Consensus       218 ---~~~~~~~h~~~v~~v~~~p~~~~l~s~s~--------d~~v~iwd~~~-~~--~~~~~~~~~~~--~~v~~~~~s~~  281 (340)
T 1got_B          218 ---CRQTFTGHESDINAICFFPNGNAFATGSD--------DATCRLFDLRA-DQ--ELMTYSHDNII--CGITSVSFSKS  281 (340)
T ss_dssp             ---EEEEECCCSSCEEEEEECTTSSEEEEEET--------TSCEEEEETTT-TE--EEEEECCTTCC--SCEEEEEECTT
T ss_pred             ---eEEEEcCCcCCEEEEEEcCCCCEEEEEcC--------CCcEEEEECCC-Cc--EEEEEccCCcc--cceEEEEECCC
Confidence               433 3333445677899999998874441        34688889874 33  12223221101  24667899999


Q ss_pred             CcEEEEEeCCCCeeeEEEEeccCCee
Q 008927          312 GELFFVTDRKNGFWNLHKWIESNNEV  337 (548)
Q Consensus       312 G~L~~~sd~~~g~~~Ly~~d~~~g~~  337 (548)
                      |++++.... +|  .|.++|..+++.
T Consensus       282 g~~l~~g~~-d~--~i~vwd~~~~~~  304 (340)
T 1got_B          282 GRLLLAGYD-DF--NCNVWDALKADR  304 (340)
T ss_dssp             SSEEEEEET-TS--EEEEEETTTCCE
T ss_pred             CCEEEEECC-CC--eEEEEEcccCcE
Confidence            996655544 44  466677666654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.11  E-value=0.0011  Score=68.14  Aligned_cols=204  Identities=11%  Similarity=0.038  Sum_probs=110.7

Q ss_pred             CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc
Q 008927          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (548)
Q Consensus       154 ~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~  233 (548)
                      ++.|++.+..++.|+++++++  +..+.+....   . .-. +.|+|+|+.|+.. ....      ...|++++..++..
T Consensus       141 ~g~lyv~d~~~~~I~~id~~~--g~~~~~~~~~---~-~~~-ia~~~~g~~l~~~-d~~~------~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          141 NNTVLAYQRDDPRVRLISVDD--NKVTTVHPGF---K-GGK-PAVTKDKQRVYSI-GWEG------THTVYVYMKASGWA  206 (409)
T ss_dssp             TTEEEEEETTTTEEEEEETTT--TEEEEEEETC---C-BCB-CEECTTSSEEEEE-BSST------TCEEEEEEGGGTTC
T ss_pred             CCCEEEEecCCCcEEEEECCC--CEEEEeeccC---C-CCc-eeEecCCCcEEEE-ecCC------CceEEEEEcCCCce
Confidence            346888877678999999986  5555443321   1 112 7899999986664 3221      12799999987751


Q ss_pred             cCcEEe----eecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEE----cCCCCCcccCC-c
Q 008927          234 QEPKVL----VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV----AGFDPTIVESP-T  304 (548)
Q Consensus       234 ~~~~~L----~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l----~~~~~~~~~~~-~  304 (548)
                        .+.+    ..........+++|++.+|++ . +.      ...|+.++.+. +.   ...+    .... .  ... .
T Consensus       207 --~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~-d~------~~~I~~~d~~~-~~---~~~~~~~~~~g~-~--~~~P~  269 (409)
T 3hrp_A          207 --PTRIGQLGSTFSGKIGAVALDETEEWLYF-V-DS------NKNFGRFNVKT-QE---VTLIKQLELSGS-L--GTNPG  269 (409)
T ss_dssp             --EEEEEECCTTSCSCCCBCEECTTSSEEEE-E-CT------TCEEEEEETTT-CC---EEEEEECCCCSC-C--CCSSC
T ss_pred             --eEEeeeccchhcCCcEEEEEeCCCCeEEE-E-EC------CCcEEEEECCC-CC---EEEEecccccCC-C--CCCcc
Confidence              2333    111222345689997666765 4 21      34799999873 43   2222    1111 0  112 2


Q ss_pred             -CceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccc--cccCC-C---cccccCcceeeeeecCCCCEEEEEEEe
Q 008927          305 -EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD--AEFSR-P---LWVFGINSYEIIQSHGEKNLIACSYRQ  377 (548)
Q Consensus       305 -~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~--~d~~~-p---~w~~~~~~~~~~~~~~d~~~l~~~~~~  377 (548)
                       .+.|+|++..+|++|.  +...|++++.++ +...+....  ..+.. +   .-.......++.+   +++ ||++ . 
T Consensus       270 ~~ia~~p~~g~lyv~d~--~~~~I~~~~~~g-~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~---dG~-lyva-d-  340 (409)
T 3hrp_A          270 PYLIYYFVDSNFYMSDQ--NLSSVYKITPDG-ECEWFCGSATQKTVQDGLREEALFAQPNGMTVDE---DGN-FYIV-D-  340 (409)
T ss_dssp             CEEEEETTTTEEEEEET--TTTEEEEECTTC-CEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT---TCC-EEEE-E-
T ss_pred             ccEEEeCCCCEEEEEeC--CCCEEEEEecCC-CEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC---CCC-EEEE-e-
Confidence             7889996553344554  234799998754 344332110  00000 0   0000011234542   444 6544 2 


Q ss_pred             C-CeEEEEEEECCCCceEeec
Q 008927          378 N-GRSYLGILDDFGHSLSLLD  397 (548)
Q Consensus       378 ~-g~~~L~~~dl~~g~~~~l~  397 (548)
                      . +...|.++++.+|.+..+.
T Consensus       341 ~~~~~~I~~~~~~~G~v~~~~  361 (409)
T 3hrp_A          341 GFKGYCLRKLDILDGYVSTVA  361 (409)
T ss_dssp             TTTTCEEEEEETTTTEEEEEE
T ss_pred             CCCCCEEEEEECCCCEEEEEe
Confidence            3 4567889997788776554

>3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482}

Probab=98.11  E-value=2.7e-06  Score=87.47  Aligned_cols=72  Identities=17%  Similarity=0.121  Sum_probs=55.5

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccc------------cCccC----hHHHHHHhcC
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA------------RGILN----LSIQYWTSRG  524 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~------------~~~~~----~~~Q~~asrG  524 (548)
                      .|.++|++. ||.+++++++.|.+  .    .+++|+||++||+.....            ...|.    ...+.|+++|
T Consensus        87 ~e~v~~~~~-~g~~l~~~l~~P~~--~----~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~G  159 (391)
T 3g8y_A           87 LEKWEFYPF-PKSVSTFLVLKPEH--L----KGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEG  159 (391)
T ss_dssp             EEEEEECCS-TTCCEEEEEEEETT--C----CSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTTT
T ss_pred             EEEEEEEcC-CCCEEEEEEEeCCC--C----CCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHCC
Confidence            467899998 99999999999964  1    357899999999643321            01122    5678999999


Q ss_pred             cEEEEeCCCCCCCCC
Q 008927          525 WAFVDVNYGGSTGLS  539 (548)
Q Consensus       525 yaVl~~NyRGStGyG  539 (548)
                      |+|+.+|+||....+
T Consensus       160 ~~Vl~~D~rg~G~s~  174 (391)
T 3g8y_A          160 YVAVAVDNAAAGEAS  174 (391)
T ss_dssp             CEEEECCCTTSGGGC
T ss_pred             CEEEEecCCCccccC
Confidence            999999999976654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.10  E-value=0.0017  Score=65.48  Aligned_cols=130  Identities=6%  Similarity=-0.010  Sum_probs=69.0

Q ss_pred             CCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCC--CCceEEE
Q 008927          200 PRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--DKAELWV  277 (548)
Q Consensus       200 pDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~--~~~~L~v  277 (548)
                      +|+++++.+......   .....|+++|.++++.  ...+..+. .- ...+||||++|+..........+  ....|.+
T Consensus        13 ~~~~~~yv~~~~~~~---~~d~~v~v~D~~t~~~--~~~i~~g~-~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v   85 (361)
T 2oiz_A           13 PQENRIYVMDSVFMH---LTESRVHVYDYTNGKF--LGMVPTAF-NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEV   85 (361)
T ss_dssp             CGGGEEEEEECCGGG---GGGCEEEEEETTTCCE--EEEEECCE-EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEE
T ss_pred             CCCCEEEEECCCCCc---cccCeEEEEECCCCeE--EEEecCCC-CC-ceEECCCCCEEEEEEecccccccCCCCCEEEE
Confidence            477775444322110   0125899999998872  22333222 22 67899999987643321000000  1245888


Q ss_pred             EEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeE
Q 008927          278 GYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL  338 (548)
Q Consensus       278 ~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~  338 (548)
                      +|+.. ++......+...............++|||+.+|+++. .....|..+|+++++..
T Consensus        86 ~d~~t-~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~-~~~~~v~v~d~~~~~~~  144 (361)
T 2oiz_A           86 WDADK-LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNA-SPATSIGIVDVAKGDYV  144 (361)
T ss_dssp             EETTT-CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEE-SSSEEEEEEETTTTEEE
T ss_pred             EECcC-CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECC-CCCCeEEEEECCCCcEE
Confidence            88874 4422112222110000023456889999996666654 22346888888887654

>3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A

Probab=98.09  E-value=2.3e-06  Score=92.74  Aligned_cols=78  Identities=14%  Similarity=0.128  Sum_probs=57.6

Q ss_pred             CccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccc-ccCccChHH-HHHHhcCcEEEEeCCCC
Q 008927          457 YFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSI-QYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       457 ~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~-~~~~~~~~~-Q~~asrGyaVl~~NyRG  534 (548)
                      .+...+.++++.+ ||.+|++.+|.|.+       .+++|+||+.||.-... ....|.... ++|+++||+|+.+|+||
T Consensus         5 ~~~~~~~v~i~~~-DG~~L~~~~~~P~~-------~~~~P~vv~~~~~g~~~~~~~~y~~~~~~~la~~Gy~vv~~D~RG   76 (587)
T 3i2k_A            5 NYSVASNVMVPMR-DGVRLAVDLYRPDA-------DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRG   76 (587)
T ss_dssp             CEEEEEEEEEECT-TSCEEEEEEEEECC-------SSCEEEEEEEESSCTTCHHHHHTTTCCTHHHHHTTCEEEEEECTT
T ss_pred             ceEEEEEEEEECC-CCCEEEEEEEECCC-------CCCeeEEEEECCcCCCccccccchhhHHHHHHHCCCEEEEEcCCC
Confidence            3445678999998 99999999999964       34789999998632221 111233234 89999999999999999


Q ss_pred             CCCCChhh
Q 008927          535 STGLSSVP  542 (548)
Q Consensus       535 StGyG~~f  542 (548)
                      +.+.+-.|
T Consensus        77 ~G~S~g~~   84 (587)
T 3i2k_A           77 LFASEGEF   84 (587)
T ss_dssp             STTCCSCC
T ss_pred             CCCCCCcc
Confidence            88766544

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.09  E-value=0.0012  Score=65.22  Aligned_cols=241  Identities=8%  Similarity=-0.018  Sum_probs=122.8

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L  167 (548)
                      ..+..+.++| |..++--.    .++...||.....  ...+.+....-.+.       .-.|++++..| .+...++.|
T Consensus        66 ~~v~~~~~s~dg~~l~s~s----~D~~v~~wd~~~~--~~~~~~~~h~~~v~-------~~~~~~~~~~l-~s~s~D~~i  131 (319)
T 3frx_A           66 HIVQDCTLTADGAYALSAS----WDKTLRLWDVATG--ETYQRFVGHKSDVM-------SVDIDKKASMI-ISGSRDKTI  131 (319)
T ss_dssp             SCEEEEEECTTSSEEEEEE----TTSEEEEEETTTT--EEEEEEECCSSCEE-------EEEECTTSCEE-EEEETTSCE
T ss_pred             ccEEEEEECCCCCEEEEEe----CCCEEEEEECCCC--CeeEEEccCCCcEE-------EEEEcCCCCEE-EEEeCCCeE
Confidence            4566778888 55544332    2477777766332  12222322211111       01344445444 444456767


Q ss_pred             EEEeCCCCCCCceecCCCCCCCCceecceeeCCC------CCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE-ee
Q 008927          168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPR------FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV-LV  240 (548)
Q Consensus       168 y~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpD------G~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~-L~  240 (548)
                      .+.++.+  .....+...    ........++|.      +..|+....+         ..|.++|+.+++   ... +.
T Consensus       132 ~vwd~~~--~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~---~~~~~~  193 (319)
T 3frx_A          132 KVWTIKG--QCLATLLGH----NDWVSQVRVVPNEKADDDSVTIISAGND---------KMVKAWNLNQFQ---IEADFI  193 (319)
T ss_dssp             EEEETTS--CEEEEECCC----SSCEEEEEECCC------CCEEEEEETT---------SCEEEEETTTTE---EEEEEC
T ss_pred             EEEECCC--CeEEEEecc----CCcEEEEEEccCCCCCCCccEEEEEeCC---------CEEEEEECCcch---hheeec
Confidence            7777765  333444332    123445567774      3355443322         357788988875   332 33


Q ss_pred             ecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeC
Q 008927          241 SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR  320 (548)
Q Consensus       241 ~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~  320 (548)
                      .....+....|||||+.|+-...        ...|.+.|+.. ++  ....+...     ..+....|+|||.+++....
T Consensus       194 ~h~~~v~~~~~sp~g~~l~s~~~--------dg~i~iwd~~~-~~--~~~~~~~~-----~~v~~~~~sp~~~~la~~~~  257 (319)
T 3frx_A          194 GHNSNINTLTASPDGTLIASAGK--------DGEIMLWNLAA-KK--AMYTLSAQ-----DEVFSLAFSPNRYWLAAATA  257 (319)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEET--------TCEEEEEETTT-TE--EEEEEECC-----SCEEEEEECSSSSEEEEEET
T ss_pred             CCCCcEEEEEEcCCCCEEEEEeC--------CCeEEEEECCC-Cc--EEEEecCC-----CcEEEEEEcCCCCEEEEEcC
Confidence            33445667889999998874441        35788889874 43  23334332     35678899999995444433


Q ss_pred             CCCeeeEEEEeccCCeeE-eecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927          321 KNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (548)
Q Consensus       321 ~~g~~~Ly~~d~~~g~~~-~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~  386 (548)
                       .+   +..++++.+... .+.+....... ..........|+|   |++.|+ +...++.-+||-+
T Consensus       258 -~~---i~v~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp---dg~~l~-sg~~Dg~i~vWd~  315 (319)
T 3frx_A          258 -TG---IKVFSLDPQYLVDDLRPEFAGYSK-AAEPHAVSLAWSA---DGQTLF-AGYTDNVIRVWQV  315 (319)
T ss_dssp             -TE---EEEEEETTEEEEEEECCCCTTCCG-GGCCCEEEEEECT---TSSEEE-EEETTSCEEEEEE
T ss_pred             -CC---cEEEEeCcCeeeeccCcccccccc-CcCcceeEEEECC---CCCEEE-EeecCceEEEEEE
Confidence             22   444455444332 22211000000 0000112355664   666654 5556666555544

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.09  E-value=0.0026  Score=64.39  Aligned_cols=290  Identities=11%  Similarity=0.047  Sum_probs=146.5

Q ss_pred             CCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCe
Q 008927           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR  166 (548)
Q Consensus        88 ~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~  166 (548)
                      ...+..+.++| |+.++--.    .+|...||.....  .....+......+.       .-+|++++..|+- ...++.
T Consensus        66 ~~~V~~~~~sp~~~~l~s~s----~D~~v~iWd~~~~--~~~~~~~~h~~~v~-------~~~~s~~g~~las-~~~d~~  131 (380)
T 3iz6_a           66 SGKVYSLDWTPEKNWIVSAS----QDGRLIVWNALTS--QKTHAIKLHCPWVM-------ECAFAPNGQSVAC-GGLDSA  131 (380)
T ss_dssp             SSCEEEEEECTTSSCEEEEE----TTSEEEEEETTTT--EEEEEEECCCTTCC-------CCEECTTSSEEEE-CCSSSC
T ss_pred             ccEEEEEEEcCCCCEEEEEe----CCCeEEEEECCCC--ccceEEecCCCCEE-------EEEECCCCCEEEE-eeCCCc
Confidence            35677888999 66654433    2577777865332  11222221111111       1257777776654 334555


Q ss_pred             EEEEeCCCCC---CC---ceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee
Q 008927          167 LYKHSIDSKD---SS---PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV  240 (548)
Q Consensus       167 Ly~~~~~~~~---~~---~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~  240 (548)
                      +.+.++....   +.   .+.++..    ........|+|++...++.....        ..|.++|+.+++   .....
T Consensus       132 v~iw~~~~~~~~~~~~~~~~~~~gh----~~~v~~~~~~~~~~~~l~s~s~D--------~~i~~wd~~~~~---~~~~~  196 (380)
T 3iz6_a          132 CSIFNLSSQADRDGNMPVSRVLTGH----KGYASSCQYVPDQETRLITGSGD--------QTCVLWDVTTGQ---RISIF  196 (380)
T ss_dssp             CEEEECCCCSSCCCSSTTCCBCCCC----SSCCCCCBCCSSSSSCEEEECTT--------SCEEEECTTTCC---EEEEE
T ss_pred             EEEEECCCCccccCCccceeeccCC----CcceEEEEEecCCCCEEEEECCC--------CcEEEEEcCCCc---EEEEe
Confidence            5555554210   11   1122222    12344567888765433332221        358888999886   33322


Q ss_pred             -----ec-CCceeeeEECC-CCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc
Q 008927          241 -----SG-SDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (548)
Q Consensus       241 -----~~-~~~~~~p~~SP-DGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~  313 (548)
                           .+ ...+....|+| |++.|+-.+.        ...|.+.|+...+.  ....+.+..    ..+....|+|||+
T Consensus       197 ~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~--------D~~v~~wd~~~~~~--~~~~~~~h~----~~v~~v~~~p~~~  262 (380)
T 3iz6_a          197 GSEFPSGHTADVLSLSINSLNANMFISGSC--------DTTVRLWDLRITSR--AVRTYHGHE----GDINSVKFFPDGQ  262 (380)
T ss_dssp             CCCSSSSCCSCEEEEEECSSSCCEEEEEET--------TSCEEEEETTTTCC--CCEEECCCS----SCCCEEEECTTSS
T ss_pred             ecccCCCCccCeEEEEeecCCCCEEEEEEC--------CCeEEEEECCCCCc--ceEEECCcC----CCeEEEEEecCCC
Confidence                 11 12244556766 7777663331        34588888864332  234455443    5678899999999


Q ss_pred             EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce
Q 008927          314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (548)
Q Consensus       314 L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~  393 (548)
                      +++.... +|  .|.++|+.+++............ ...........|.|   +++.|+ +...+|  .|+++|+..++.
T Consensus       263 ~l~s~s~-D~--~i~lwd~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~---~g~~l~-~g~~dg--~i~vwd~~~~~~  332 (380)
T 3iz6_a          263 RFGTGSD-DG--TCRLFDMRTGHQLQVYNREPDRN-DNELPIVTSVAFSI---SGRLLF-AGYSNG--DCYVWDTLLAEM  332 (380)
T ss_dssp             EEEEECS-SS--CEEEEETTTTEEEEEECCCCSSS-CCSSCSCSEEEECS---SSSEEE-EECTTS--CEEEEETTTCCE
T ss_pred             eEEEEcC-CC--eEEEEECCCCcEEEEeccccccc-ccccCceEEEEECC---CCCEEE-EEECCC--CEEEEECCCCce
Confidence            5555443 44  46667777776544432111100 00001122355664   666554 443444  466778877654


Q ss_pred             E-eec---C-CCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCC
Q 008927          394 S-LLD---I-PFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDH  434 (548)
Q Consensus       394 ~-~l~---~-~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~  434 (548)
                      . .+.   . ....+..+  ++++..|+ .++.   -..|.++++.++
T Consensus       333 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~---D~~i~iW~~~~~  376 (380)
T 3iz6_a          333 VLNLGTLQNSHEGRISCLGLSSDGSALC-TGSW---DKNLKIWAFSGH  376 (380)
T ss_dssp             EEEECCSCSSCCCCCCEEEECSSSSEEE-EECT---TSCEEEEECCSS
T ss_pred             EEEEecccCCCCCceEEEEECCCCCEEE-EeeC---CCCEEEEecCCC
Confidence            3 332   1 12234433  67777543 3332   245667776544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.08  E-value=0.0033  Score=61.08  Aligned_cols=257  Identities=8%  Similarity=0.001  Sum_probs=128.9

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEE-CCEEEEEeCCCCe
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF-GDTVIFSNYKDQR  166 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~-~~~i~F~~~~~~~  166 (548)
                      ..+..++++| |+.++--.    .++...||............|....-.+.       .-.|+++ .+.++.+...|+.
T Consensus        10 ~~V~~~~~s~~g~~las~s----~D~~v~iw~~~~~~~~~~~~l~gH~~~V~-------~v~~s~~~~g~~l~s~s~D~~   78 (297)
T 2pm7_B           10 EMIHDAVMDYYGKRMATCS----SDKTIKIFEVEGETHKLIDTLTGHEGPVW-------RVDWAHPKFGTILASCSYDGK   78 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEE----TTSCEEEEEBCSSCBCCCEEECCCSSCEE-------EEEECCGGGCSEEEEEETTTE
T ss_pred             CceEEEEECCCCCEEEEEe----CCCEEEEEecCCCCcEEEEEEccccCCeE-------EEEecCCCcCCEEEEEcCCCE
Confidence            3466788899 77665433    25777788764321011222322211111       1134443 2344555556776


Q ss_pred             EEEEeCCCCCCCce---ecCCCCCCCCceecceeeCCC--CCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee
Q 008927          167 LYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS  241 (548)
Q Consensus       167 Ly~~~~~~~~~~~~---~lT~~~~~~~~~~~~~~~SpD--G~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~  241 (548)
                      |.+-++..  ++..   .+...    ...+....|+|+  |+.|+....+         ..|.++|+.++.......+..
T Consensus        79 v~iWd~~~--~~~~~~~~~~~h----~~~v~~v~~~p~~~g~~l~s~s~d---------~~v~~wd~~~~~~~~~~~~~~  143 (297)
T 2pm7_B           79 VMIWKEEN--GRWSQIAVHAVH----SASVNSVQWAPHEYGPMLLVASSD---------GKVSVVEFKENGTTSPIIIDA  143 (297)
T ss_dssp             EEEEEBSS--SCBCCCEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------SEEEEEEBCSSSCBCCEEEEC
T ss_pred             EEEEEcCC--CceEEEEEeecC----CCceeEEEeCcCCCCcEEEEEECC---------CcEEEEEecCCCceeeeeeec
Confidence            76667765  3322   22222    224567789998  7776665433         357778887653100223333


Q ss_pred             cCCceeeeEECCC-------------CCEEEEEEecCCCCCCCCceEEEEEecCCCc-eeeeEEEcCCCCCcccCCcCce
Q 008927          242 GSDFYAFPRMDPR-------------GERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       242 ~~~~~~~p~~SPD-------------Gk~La~~~~~~~~~p~~~~~L~v~~~~~~g~-~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      ....+....|+|+             ++.|+-...        ...|.+.++..+.. ......+.+..    ..+....
T Consensus       144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~--------D~~v~lwd~~~~~~~~~~~~~l~~H~----~~V~~v~  211 (297)
T 2pm7_B          144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA--------DNLVKIWKYNSDAQTYVLESTLEGHS----DWVRDVA  211 (297)
T ss_dssp             CSSCEEEEEECCCC------------CCEEEEEET--------TSCEEEEEEETTTTEEEEEEEECCCS----SCEEEEE
T ss_pred             ccCccceEeecCCcccccccCCCCCCcceEEEEcC--------CCcEEEEEEcCCCceEEEEEEecCCC----CceEEEE
Confidence            3334566789997             456653331        23577777764221 11122344433    4678899


Q ss_pred             ECcCC---cEEEEEeCCCCeeeEEEEeccCCee-EeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEE
Q 008927          308 WSSKG---ELFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL  383 (548)
Q Consensus       308 wspDG---~L~~~sd~~~g~~~Ly~~d~~~g~~-~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L  383 (548)
                      |+||+   ++++.... ++.-.||.++...+.. ..+... .......|     ...|.|   +++.| ++...++.-+|
T Consensus       212 ~sp~~~~~~~las~s~-D~~v~iWd~~~~~~~~~~~~~~~-~~~~~~v~-----~~~~s~---~g~~l-as~~~D~~v~l  280 (297)
T 2pm7_B          212 WSPTVLLRSYMASVSQ-DRTCIIWTQDNEQGPWKKTLLKE-EKFPDVLW-----RASWSL---SGNVL-ALSGGDNKVTL  280 (297)
T ss_dssp             ECCCCSSSEEEEEEET-TSCEEEEEESSTTSCCEEEESSS-SCCSSCEE-----EEEECS---SSCCE-EEEETTSCEEE
T ss_pred             ECCCCCCceEEEEEEC-CCcEEEEEeCCCCCccceeeeec-ccCCCcEE-----EEEECC---CCCEE-EEEcCCCcEEE
Confidence            99996   44444444 5555555443221221 122210 11111112     245654   55554 45566777777


Q ss_pred             EEEECCCCceEe
Q 008927          384 GILDDFGHSLSL  395 (548)
Q Consensus       384 ~~~dl~~g~~~~  395 (548)
                      |..+.. |.++.
T Consensus       281 w~~~~~-g~w~~  291 (297)
T 2pm7_B          281 WKENLE-GKWEP  291 (297)
T ss_dssp             EEECTT-SCEEE
T ss_pred             EEECCC-CcEEe
Confidence            776643 44443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.07  E-value=0.00032  Score=78.29  Aligned_cols=201  Identities=11%  Similarity=0.075  Sum_probs=117.2

Q ss_pred             eEEECCEEEEEeCCCCeEEEEeCCCCC--CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          150 FRIFGDTVIFSNYKDQRLYKHSIDSKD--SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~--~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      |.+.++.|||++...++|+++++++..  +..+.+....   ......+++++.++.|++. ...       ...|++++
T Consensus       431 ~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~---l~~P~GLAvD~~~~~LY~t-D~~-------~~~I~v~~  499 (791)
T 3m0c_C          431 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---IQAPDGLAVDWIHSNIYWT-DSV-------LGTVSVAD  499 (791)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEC--------CEEEECSS---CSCCCEEEEETTTTEEEEE-ETT-------TTEEEEEE
T ss_pred             ecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC---CCCcceeeeeecCCcEEEE-ecC-------CCeEEEEe
Confidence            434467899998878899999998620  1233333210   1223456788888887664 322       25899999


Q ss_pred             CCCCCccCcEEeeec-CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCc
Q 008927          228 LNGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (548)
Q Consensus       228 l~~g~~~~~~~L~~~-~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~  306 (548)
                      +++..   .+.|... ...-...++.|.+.+|+|..|..      ...|+++++++  .. ...++...-    .....+
T Consensus       500 ldG~~---~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~------~~~I~~~~~dG--~~-~~~lv~~~l----~~P~GL  563 (791)
T 3m0c_C          500 TKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------PAKIKKGGLNG--VD-IYSLVTENI----QWPNGI  563 (791)
T ss_dssp             TTSSS---EEEEEECTTCCEEEEEEETTTTEEEEEECSS------SCEEEEEETTS--CC-EEEEECSSC----SCEEEE
T ss_pred             CCCCe---EEEEEeCCCCCcceEEEecCCCCEEEecCCC------CCeEEEEecCC--Cc-eEEEEeCCC----CCceEE
Confidence            99877   6666542 22334568899988898876432      25799999873  21 123333221    234556


Q ss_pred             eECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927          307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (548)
Q Consensus       307 ~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~  386 (548)
                      +.++++..+|++|.  +...|+++++++...+.+.........|   +   .+++     .+++||++-  .....|+++
T Consensus       564 avD~~~~~LYwaD~--~~~~I~~~d~dG~~~~~v~~~~~~l~~P---~---glav-----~~~~lYwtD--~~~~~I~~~  628 (791)
T 3m0c_C          564 TLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHP---F---SLAV-----FEDKVFWTD--IINEAIFSA  628 (791)
T ss_dssp             EEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSE---E---EEEE-----ETTEEEEEE--TTTTEEEEE
T ss_pred             EEecCCCeEEEEeC--CCCcEEEEecCCCceEEEecCCCccCCC---C---EEEE-----eCCEEEEEE--CCCCEEEEE
Confidence            77777664444554  3357999999776665554321111111   1   1223     456777653  344578888


Q ss_pred             ECCCCc
Q 008927          387 DDFGHS  392 (548)
Q Consensus       387 dl~~g~  392 (548)
                      |..+|+
T Consensus       629 dk~tG~  634 (791)
T 3m0c_C          629 NRLTGS  634 (791)
T ss_dssp             ETTTCC
T ss_pred             eCCCCc
Confidence            876664

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.07  E-value=0.0012  Score=65.71  Aligned_cols=201  Identities=10%  Similarity=-0.051  Sum_probs=107.9

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L  167 (548)
                      ..+..+.++| +..++ ...   .++...||.....  ...+.+......+.       .-+|+|++..|+- ...++.|
T Consensus        77 ~~V~~~~~~~~~~~l~-s~s---~D~~v~lwd~~~~--~~~~~~~~h~~~v~-------~v~~sp~~~~l~s-~~~d~~i  142 (343)
T 2xzm_R           77 HFVSDLALSQENCFAI-SSS---WDKTLRLWDLRTG--TTYKRFVGHQSEVY-------SVAFSPDNRQILS-AGAEREI  142 (343)
T ss_dssp             SCEEEEEECSSTTEEE-EEE---TTSEEEEEETTSS--CEEEEEECCCSCEE-------EEEECSSTTEEEE-EETTSCE
T ss_pred             CceEEEEECCCCCEEE-EEc---CCCcEEEEECCCC--cEEEEEcCCCCcEE-------EEEECCCCCEEEE-EcCCCEE
Confidence            4566778888 55443 322   2577777866432  12223322211111       1256777776654 3456777


Q ss_pred             EEEeCCCCCCCceecCCCCCCCCceecceeeCCCC----------CEEEEEEeccCCCCCCceeEEEEEECCCCCccCcE
Q 008927          168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRF----------NRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK  237 (548)
Q Consensus       168 y~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG----------~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~  237 (548)
                      .+.++.+  .....+..... .........|+|++          ..|+....+         ..|.++|.....   ..
T Consensus       143 ~~wd~~~--~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~---~~  207 (343)
T 2xzm_R          143 KLWNILG--ECKFSSAEKEN-HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD---------GRLKVWNTNFQI---RY  207 (343)
T ss_dssp             EEEESSS--CEEEECCTTTS-CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT---------SEEEEEETTTEE---EE
T ss_pred             EEEeccC--CceeeeecccC-CCceeeeeeeccccccccccCCCCCEEEEEcCC---------CEEEEEcCCCce---eE
Confidence            7777764  32222221100 11234456788887          455544332         357777854332   33


Q ss_pred             EeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEE
Q 008927          238 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV  317 (548)
Q Consensus       238 ~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~  317 (548)
                      .+......+....|||||++|+-...        ...|.+.|+...+.  ....+...     ..+....|+||++++..
T Consensus       208 ~~~~h~~~v~~~~~s~~g~~l~sgs~--------dg~v~iwd~~~~~~--~~~~~~~~-----~~v~~v~~sp~~~~la~  272 (343)
T 2xzm_R          208 TFKAHESNVNHLSISPNGKYIATGGK--------DKKLLIWDILNLTY--PQREFDAG-----STINQIAFNPKLQWVAV  272 (343)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEET--------TCEEEEEESSCCSS--CSEEEECS-----SCEEEEEECSSSCEEEE
T ss_pred             EEcCccccceEEEECCCCCEEEEEcC--------CCeEEEEECCCCcc--cceeecCC-----CcEEEEEECCCCCEEEE
Confidence            33333445677899999999874441        35688889853332  12223221     34678899999985544


Q ss_pred             EeCCCCeeeEEEEeccCCee
Q 008927          318 TDRKNGFWNLHKWIESNNEV  337 (548)
Q Consensus       318 sd~~~g~~~Ly~~d~~~g~~  337 (548)
                      ...  +  .+..+++.+++.
T Consensus       273 ~~d--~--~v~iw~~~~~~~  288 (343)
T 2xzm_R          273 GTD--Q--GVKIFNLMTQSK  288 (343)
T ss_dssp             EES--S--CEEEEESSSCCS
T ss_pred             ECC--C--CEEEEEeCCCCC
Confidence            432  2  266667666543

>3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A

Probab=98.06  E-value=8.3e-06  Score=81.40  Aligned_cols=70  Identities=20%  Similarity=0.129  Sum_probs=54.7

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccc-cccCccChHHHHHHhc-CcEEEEeCCCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSR-GWAFVDVNYGGSTG  537 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~-~~~~~~~~~~Q~~asr-GyaVl~~NyRGStG  537 (548)
                      ..+.+++++. +| +|.+++|.|.+       .++.|+||++|||... .....|......|+.+ ||.|+.+||||+..
T Consensus        64 ~~~~~~i~~~-~~-~i~~~iy~P~~-------~~~~p~vv~~HGGg~~~g~~~~~~~~~~~La~~~g~~Vv~~Dyrg~~~  134 (323)
T 3ain_A           64 KIEDITIPGS-ET-NIKARVYYPKT-------QGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRLAPE  134 (323)
T ss_dssp             EEEEEEEECS-SS-EEEEEEEECSS-------CSCCCEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTT
T ss_pred             EEEEEEecCC-CC-eEEEEEEecCC-------CCCCcEEEEECCCccccCChHHHHHHHHHHHHhcCCEEEEecCCCCCC
Confidence            4577888886 77 89999999953       2457999999999843 3444566677788864 99999999999876


Q ss_pred             C
Q 008927          538 L  538 (548)
Q Consensus       538 y  538 (548)
                      +
T Consensus       135 ~  135 (323)
T 3ain_A          135 N  135 (323)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A*

Probab=98.06  E-value=5.4e-06  Score=88.95  Aligned_cols=79  Identities=16%  Similarity=0.276  Sum_probs=58.3

Q ss_pred             CccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccc---cc--------------cCcc----Ch
Q 008927          457 YFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS---EA--------------RGIL----NL  515 (548)
Q Consensus       457 ~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~---~~--------------~~~~----~~  515 (548)
                      .+...+.++++.+ ||.+|++++|.|++       .+++|+||..||--..   .+              ..++    .+
T Consensus        37 ~~~~~~~v~i~~~-DG~~L~a~l~~P~~-------~~~~P~vl~~~pyg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  108 (560)
T 3iii_A           37 EMIMEKDGTVEMR-DGEKLYINIFRPNK-------DGKFPVVMSADTYGKDNKPKITNMGALWPTLGTIPTSSFTPEESP  108 (560)
T ss_dssp             EEEEEEEEEEECT-TSCEEEEEEEECSS-------SSCEEEEEEEESSCTTCCCC--CHHHHSGGGCCCCCCTTCCTTSC
T ss_pred             ceEEEEEEEEECC-CCcEEEEEEEecCC-------CCCCCEEEEecCCCCCcccccccccccccccccccccccccccCC
Confidence            3445678999998 99999999999964       3578999998852211   01              0011    13


Q ss_pred             HHHHHHhcCcEEEEeCCCCCCCCChhhh
Q 008927          516 SIQYWTSRGWAFVDVNYGGSTGLSSVPS  543 (548)
Q Consensus       516 ~~Q~~asrGyaVl~~NyRGStGyG~~f~  543 (548)
                      ..++|+++||+|+.+|+||+.+.+-.|.
T Consensus       109 ~~~~la~~Gy~vv~~D~RG~G~S~G~~~  136 (560)
T 3iii_A          109 DPGFWVPNDYVVVKVALRGSDKSKGVLS  136 (560)
T ss_dssp             CHHHHGGGTCEEEEEECTTSTTCCSCBC
T ss_pred             CHHHHHhCCCEEEEEcCCCCCCCCCccc
Confidence            4799999999999999999988766553

>3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum}

Probab=98.06  E-value=6.9e-06  Score=81.73  Aligned_cols=71  Identities=15%  Similarity=0.081  Sum_probs=55.4

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccc-ccCccChHHHHHH-hcCcEEEEeCCCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWT-SRGWAFVDVNYGGSTG  537 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~-~~~~~~~~~Q~~a-srGyaVl~~NyRGStG  537 (548)
                      ..+.+++++. ||.+|++++|.|.+        ++.|+||++|||.... ....+......|+ ..||+|+.+|||++.+
T Consensus        59 ~~~~~~i~~~-~G~~i~~~~~~P~~--------~~~p~vv~~HGgG~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~  129 (317)
T 3qh4_A           59 AVADDVVTGE-AGRPVPVRIYRAAP--------TPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAPE  129 (317)
T ss_dssp             EEEEEEEECT-TSCEEEEEEEECSC--------SSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTT
T ss_pred             eEEEEEecCC-CCCeEEEEEEecCC--------CCCcEEEEECCCcCccCChHHHHHHHHHHHHHcCCEEEEecCCCCCC
Confidence            4577889997 99999999999953        3579999999987533 3334555667777 4599999999999987


Q ss_pred             CC
Q 008927          538 LS  539 (548)
Q Consensus       538 yG  539 (548)
                      +.
T Consensus       130 ~~  131 (317)
T 3qh4_A          130 HP  131 (317)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B*

Probab=98.05  E-value=4.7e-06  Score=81.84  Aligned_cols=71  Identities=18%  Similarity=0.302  Sum_probs=55.9

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccc-cccCccChHHHHHHhcCcEEEEeCCCCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSRGWAFVDVNYGGSTGL  538 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~-~~~~~~~~~~Q~~asrGyaVl~~NyRGStGy  538 (548)
                      ..+.+++++. ||.+|+++++.|.+       .++.|+||++||++.. ..  .+ .....|+++||.|+.+||||....
T Consensus        55 ~~~~~~~~~~-~g~~i~~~~~~P~~-------~~~~p~vv~~HG~~~~~~~--~~-~~~~~l~~~g~~v~~~d~rg~g~s  123 (318)
T 1l7a_A           55 KVYRLTYKSF-GNARITGWYAVPDK-------EGPHPAIVKYHGYNASYDG--EI-HEMVNWALHGYATFGMLVRGQQRS  123 (318)
T ss_dssp             EEEEEEEEEG-GGEEEEEEEEEESS-------CSCEEEEEEECCTTCCSGG--GH-HHHHHHHHTTCEEEEECCTTTSSS
T ss_pred             EEEEEEEEcc-CCCEEEEEEEeeCC-------CCCccEEEEEcCCCCCCCC--Cc-ccccchhhCCcEEEEecCCCCCCC
Confidence            4578889997 99999999999964       2467999999999865 32  12 234578999999999999998776


Q ss_pred             Chh
Q 008927          539 SSV  541 (548)
Q Consensus       539 G~~  541 (548)
                      +..
T Consensus       124 ~~~  126 (318)
T 1l7a_A          124 EDT  126 (318)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            544

>3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0

Probab=98.05  E-value=3.5e-06  Score=81.52  Aligned_cols=75  Identities=16%  Similarity=0.029  Sum_probs=52.7

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccC-ccChHHHHHHhcCcEEEEeCC--CCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNY--GGSTGL  538 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~-~~~~~~Q~~asrGyaVl~~Ny--RGStGy  538 (548)
                      +.+++.+..+|.++...+|.|.+  ++   .+++|+||++||++...... .+....++++++||+|+.+|+  ||..+.
T Consensus        17 ~~~~~~s~~~~~~~~~~v~~P~~--~~---~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~rG~~~~   91 (282)
T 3fcx_A           17 KVFEHDSVELNCKMKFAVYLPPK--AE---TGKCPALYWLSGLTCTEQNFISKSGYHQSASEHGLVVIAPDTSPRGCNIK   91 (282)
T ss_dssp             EEEEEEETTTTEEEEEEEEECGG--GG---TSCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEEECSCSSCCCC-
T ss_pred             EEEEEEchhcCCeeEEEEEcCCC--CC---CCCCCEEEEEcCCCCCccchhhcchHHHHhhcCCeEEEEeccccCccccc
Confidence            44555543378999999999964  32   36789999999997654322 112235889999999999999  998876


Q ss_pred             Chh
Q 008927          539 SSV  541 (548)
Q Consensus       539 G~~  541 (548)
                      |..
T Consensus        92 ~~~   94 (282)
T 3fcx_A           92 GED   94 (282)
T ss_dssp             ---
T ss_pred             ccc
Confidence            644

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.05  E-value=0.0028  Score=62.07  Aligned_cols=282  Identities=13%  Similarity=0.075  Sum_probs=145.3

Q ss_pred             CCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCC----cccCCCCCCccccceeeCCeeeEEECCEEEEEeC
Q 008927           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEP----SDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNY  162 (548)
Q Consensus        88 ~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~----~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~  162 (548)
                      ...+..++++| ++.++.....   +|...||.+.... ...    +.+......+.       .-.|++++..|+ +..
T Consensus        38 ~~~V~~v~~sp~~~~~l~S~s~---D~~i~vWd~~~~~-~~~~~~~~~l~~h~~~V~-------~~~~s~dg~~l~-s~~  105 (340)
T 4aow_A           38 NGWVTQIATTPQFPDMILSASR---DKTIIMWKLTRDE-TNYGIPQRALRGHSHFVS-------DVVISSDGQFAL-SGS  105 (340)
T ss_dssp             SSCEEEEEECTTCTTEEEEEET---TSCEEEEEECCSS-SCSEEEEEEECCCSSCEE-------EEEECTTSSEEE-EEE
T ss_pred             cCCEEEEEEeCCCCCEEEEEcC---CCeEEEEECCCCC-cccceeeEEEeCCCCCEE-------EEEECCCCCEEE-EEc
Confidence            34577788998 6666555433   5777888775431 010    11111111111       124556665554 444


Q ss_pred             CCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee-
Q 008927          163 KDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-  240 (548)
Q Consensus       163 ~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~-  240 (548)
                      .++.|+..+...  .... .....    ........++++++.|+....+         ..+.++|+.+..   ...+. 
T Consensus       106 ~d~~i~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~l~s~s~d---------~~~~~~d~~~~~---~~~~~~  167 (340)
T 4aow_A          106 WDGTLRLWDLTT--GTTTRRFVGH----TKDVLSVAFSSDNRQIVSGSRD---------KTIKLWNTLGVC---KYTVQD  167 (340)
T ss_dssp             TTSEEEEEETTT--TEEEEEEECC----SSCEEEEEECTTSSCEEEEETT---------SCEEEECTTSCE---EEEECS
T ss_pred             ccccceEEeecc--cceeeeecCC----CCceeEEEEeecCccceeecCC---------CeEEEEEeCCCc---eEEEEe
Confidence            677788777765  3222 22221    1223445689999887765433         246667776654   22222 


Q ss_pred             e-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEe
Q 008927          241 S-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD  319 (548)
Q Consensus       241 ~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd  319 (548)
                      . ..+......|++++....++.-..      ...|.+.++.. ++  ....+.+..    ..+....|+|||++++...
T Consensus       168 ~~~~~~v~~~~~~~~~~~~~~~s~~~------d~~i~i~d~~~-~~--~~~~~~~h~----~~v~~~~~s~~~~~l~s~s  234 (340)
T 4aow_A          168 ESHSEWVSCVRFSPNSSNPIIVSCGW------DKLVKVWNLAN-CK--LKTNHIGHT----GYLNTVTVSPDGSLCASGG  234 (340)
T ss_dssp             SSCSSCEEEEEECSCSSSCEEEEEET------TSCEEEEETTT-TE--EEEEECCCS----SCEEEEEECTTSSEEEEEE
T ss_pred             ccccCcccceEEccCCCCcEEEEEcC------CCEEEEEECCC-Cc--eeeEecCCC----CcEEEEEECCCCCEEEEEe
Confidence            1 233455668898876544343221      24588888874 43  233344433    4577789999999666654


Q ss_pred             CCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eecC
Q 008927          320 RKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDI  398 (548)
Q Consensus       320 ~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~~  398 (548)
                      . +|  .|.++|+.+++........    .+     .....+.    +++.++... .++  .|.++|++++... .+..
T Consensus       235 ~-Dg--~i~iwd~~~~~~~~~~~~~----~~-----v~~~~~~----~~~~~~~~~-~d~--~i~iwd~~~~~~~~~~~~  295 (340)
T 4aow_A          235 K-DG--QAMLWDLNEGKHLYTLDGG----DI-----INALCFS----PNRYWLCAA-TGP--SIKIWDLEGKIIVDELKQ  295 (340)
T ss_dssp             T-TC--EEEEEETTTTEEEEEEECS----SC-----EEEEEEC----SSSSEEEEE-ETT--EEEEEETTTTEEEEEECC
T ss_pred             C-CC--eEEEEEeccCceeeeecCC----ce-----EEeeecC----CCCceeecc-CCC--EEEEEECCCCeEEEeccc
Confidence            4 44  4666777666543322111    11     1123344    334454433 344  3566787766432 2221


Q ss_pred             C---------CceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          399 P---------FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       399 ~---------~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      +         ...+..+  +++++.|+ +++..   ..|+++|+++|+
T Consensus       296 ~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D---g~v~iW~~~tGt  339 (340)
T 4aow_A          296 EVISTSSKAEPPQCTSLAWSADGQTLF-AGYTD---NLVRVWQVTIGT  339 (340)
T ss_dssp             C-------CCCCCEEEEEECTTSSEEE-EEETT---SCEEEEEEEC--
T ss_pred             cceeeeccCCCCCEEEEEECCCCCEEE-EEeCC---CEEEEEeCCCcC
Confidence            1         1224433  56776554 44332   467778877764

>1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2

Probab=98.04  E-value=3.5e-06  Score=85.50  Aligned_cols=71  Identities=17%  Similarity=0.139  Sum_probs=54.3

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccc-cC--ccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RG--ILNLSIQYWTSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~-~~--~~~~~~Q~~asrGyaVl~~NyRGStG  537 (548)
                      .+.+++++. +|..+++++|.|.+.      .++.|+||++|||..... ..  .|....+.|+++||+|+.+||||..|
T Consensus        82 ~~~~~~~~~-~g~~l~~~v~~p~~~------~~~~p~vv~iHGgg~~~g~~~~~~~~~~~~~la~~g~~vv~~d~r~~gg  154 (361)
T 1jkm_A           82 TSTETILGV-DGNEITLHVFRPAGV------EGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWT  154 (361)
T ss_dssp             EEEEEEECT-TSCEEEEEEEEETTC------CSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEE
T ss_pred             eeeeeeecC-CCCeEEEEEEeCCCC------CCCCeEEEEEcCCccccCCCcccchhHHHHHHHhCCCEEEEEecCCCCC
Confidence            356778887 888899999999641      236799999999984322 22  34556788999999999999999854


Q ss_pred             C
Q 008927          538 L  538 (548)
Q Consensus       538 y  538 (548)
                      +
T Consensus       155 ~  155 (361)
T 1jkm_A          155 A  155 (361)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP}

Probab=98.04  E-value=6.2e-06  Score=82.78  Aligned_cols=70  Identities=24%  Similarity=0.353  Sum_probs=55.7

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLS  539 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG  539 (548)
                      ..+.++|++. ||.+|+++++.|++       .++.|+||++||++.....  |. ....|+++||+|+.+|+||..+.+
T Consensus        81 ~~~~~~~~~~-~g~~l~~~~~~P~~-------~~~~p~vv~~HG~g~~~~~--~~-~~~~~~~~G~~v~~~D~rG~g~s~  149 (346)
T 3fcy_A           81 ECYDLYFTGV-RGARIHAKYIKPKT-------EGKHPALIRFHGYSSNSGD--WN-DKLNYVAAGFTVVAMDVRGQGGQS  149 (346)
T ss_dssp             EEEEEEEECG-GGCEEEEEEEEESC-------SSCEEEEEEECCTTCCSCC--SG-GGHHHHTTTCEEEEECCTTSSSSC
T ss_pred             EEEEEEEEcC-CCCEEEEEEEecCC-------CCCcCEEEEECCCCCCCCC--hh-hhhHHHhCCcEEEEEcCCCCCCCC
Confidence            4578899997 99999999999964       2467999999999865432  33 334788999999999999987655


Q ss_pred             h
Q 008927          540 S  540 (548)
Q Consensus       540 ~  540 (548)
                      .
T Consensus       150 ~  150 (346)
T 3fcy_A          150 Q  150 (346)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A

Probab=98.04  E-value=7.5e-06  Score=83.67  Aligned_cols=81  Identities=15%  Similarity=0.139  Sum_probs=59.2

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCc--------cC--hHHHHHHhcCcEEEE
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI--------LN--LSIQYWTSRGWAFVD  529 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~--------~~--~~~Q~~asrGyaVl~  529 (548)
                      ..+.++|.+..||.++++++|.|.+  ++  +++++|+||++|||+.......        +.  ....+.+.+|+.|+.
T Consensus       143 ~~~~~~~~~~~dg~~l~~~v~~P~~--~~--~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vv~  218 (380)
T 3doh_A          143 DFLAFTFKDPETGVEIPYRLFVPKD--VN--PDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLA  218 (380)
T ss_dssp             GEEEEEEECTTTCCEEEEEEECCSS--CC--TTSCEEEEEEECCGGGCSSSSSHHHHSSTTTTGGGSHHHHTTSCCEEEE
T ss_pred             cccceeeccCCCCcEEEEEEEcCCC--CC--CCCCccEEEEECCCCCCCCchhhhhhccccceeecCccccccCCEEEEE
Confidence            4567788873279999999999965  43  3678899999999986532211        11  122345577889999


Q ss_pred             eCCCCCCCCChhhhh
Q 008927          530 VNYGGSTGLSSVPST  544 (548)
Q Consensus       530 ~NyRGStGyG~~f~~  544 (548)
                      +|+||+.++|..|.+
T Consensus       219 pd~~g~~~~~~~~~~  233 (380)
T 3doh_A          219 PQCPPNSSWSTLFTD  233 (380)
T ss_dssp             ECCCTTCCSBTTTTC
T ss_pred             ecCCCCCcccccccc
Confidence            999999999987764

>3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A*

Probab=98.03  E-value=9.2e-06  Score=82.63  Aligned_cols=77  Identities=17%  Similarity=0.128  Sum_probs=53.1

Q ss_pred             CCeEEEeeccCCCeEEEEEEEc-CCCCCC----------------CCCCCCCCcEEEEEccCccccccC---ccChHHHH
Q 008927          460 LPELIEFPTEVPGQKAYAYYYP-PSNPIY----------------QASPEEKPPLLVKSHGGPTSEARG---ILNLSIQY  519 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~-P~~~~~----------------~~~~~~~~Pliv~iHGGP~~~~~~---~~~~~~Q~  519 (548)
                      ..+.+++.+. ||  +...+|. |++.+-                ..+.++++|+||++|||+......   .|....+.
T Consensus        63 ~~~dv~~~~~-~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~~~~~~~~~~~~  139 (365)
T 3ebl_A           63 SSFDHIIDQS-VG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRR  139 (365)
T ss_dssp             EEEEEEEETT-TT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCTTBHHHHHHHHH
T ss_pred             ceeeEEecCC-CC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCCchhhHHHHHHH
Confidence            4577889887 88  6677776 864200                001246789999999998643222   24556788


Q ss_pred             HHhc-CcEEEEeCCCCCCCCC
Q 008927          520 WTSR-GWAFVDVNYGGSTGLS  539 (548)
Q Consensus       520 ~asr-GyaVl~~NyRGStGyG  539 (548)
                      |+++ ||+|+.+|||++.++.
T Consensus       140 la~~~g~~Vv~~dyR~~p~~~  160 (365)
T 3ebl_A          140 FVKLSKGVVVSVNYRRAPEHR  160 (365)
T ss_dssp             HHHHHTSEEEEECCCCTTTSC
T ss_pred             HHHHCCCEEEEeeCCCCCCCC
Confidence            8886 9999999999998754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.03  E-value=0.00032  Score=72.58  Aligned_cols=198  Identities=8%  Similarity=0.024  Sum_probs=109.5

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~Sp-DG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      +|.|.++.++.+...++.|.+.++..+ .....++...  ....+..+.|+| |++.|+..+.|         ..|.++|
T Consensus       126 ~~~P~~~~~lasGs~dg~i~lWd~~~~-~~~~~~~~~g--H~~~V~~l~f~p~~~~~l~s~s~D---------~~v~iwd  193 (435)
T 4e54_B          126 AWHPTHPSTVAVGSKGGDIMLWNFGIK-DKPTFIKGIG--AGGSITGLKFNPLNTNQFYASSME---------GTTRLQD  193 (435)
T ss_dssp             EECSSCTTCEEEEETTSCEEEECSSCC-SCCEEECCCS--SSCCCCEEEECSSCTTEEEEECSS---------SCEEEEE
T ss_pred             EEeCCCCCEEEEEeCCCEEEEEECCCC-CceeEEEccC--CCCCEEEEEEeCCCCCEEEEEeCC---------CEEEEee
Confidence            566655555555556788888888762 2233333210  123466788998 67776554333         2477789


Q ss_pred             CCCCCccCcEEeeecCC---ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCc
Q 008927          228 LNGQNIQEPKVLVSGSD---FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT  304 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~---~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~  304 (548)
                      ++++.   .+.+.....   .+....|+|||+.|+...        ....|++.+++. ..   ...+.+..    ..+.
T Consensus       194 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~--------~dg~i~~wd~~~-~~---~~~~~~h~----~~v~  254 (435)
T 4e54_B          194 FKGNI---LRVFASSDTINIWFCSLDVSASSRMVVTGD--------NVGNVILLNMDG-KE---LWNLRMHK----KKVT  254 (435)
T ss_dssp             TTSCE---EEEEECCSSCSCCCCCEEEETTTTEEEEEC--------SSSBEEEEESSS-CB---CCCSBCCS----SCEE
T ss_pred             ccCCc---eeEEeccCCCCccEEEEEECCCCCEEEEEe--------CCCcEeeeccCc-ce---eEEEeccc----ceEE
Confidence            98876   555543322   234568999999887432        135688889863 32   22233332    4577


Q ss_pred             CceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeE-eecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEE
Q 008927          305 EPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY  382 (548)
Q Consensus       305 ~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~-~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~  382 (548)
                      ...|+|+++ +++.... ++.  |.++|+.+++.. .+....   .....   .....|.|   +++.|+ +...++.  
T Consensus       255 ~v~~~p~~~~~~~s~s~-d~~--v~iwd~~~~~~~~~~~~~~---~h~~~---v~~~~~sp---dg~~l~-s~~~D~~--  319 (435)
T 4e54_B          255 HVALNPCCDWFLATASV-DQT--VKIWDLRQVRGKASFLYSL---PHRHP---VNAACFSP---DGARLL-TTDQKSE--  319 (435)
T ss_dssp             EEEECTTCSSEEEEEET-TSB--CCEEETTTCCSSSCCSBCC---BCSSC---EEECCBCT---TSSEEE-EEESSSC--
T ss_pred             eeeecCCCceEEEEecC-cce--eeEEecccccccceEEEee---ecccc---ccceeECC---CCCeeE-EEcCCCE--
Confidence            889999998 7766554 454  444565444321 111100   01111   11234554   666554 4555554  


Q ss_pred             EEEEECCCCc
Q 008927          383 LGILDDFGHS  392 (548)
Q Consensus       383 L~~~dl~~g~  392 (548)
                      |.++|+.+++
T Consensus       320 i~iwd~~~~~  329 (435)
T 4e54_B          320 IRVYSASQWD  329 (435)
T ss_dssp             EEEEESSSSS
T ss_pred             EEEEECCCCc
Confidence            5566777665

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.03  E-value=3.5e-05  Score=85.19  Aligned_cols=202  Identities=12%  Similarity=0.097  Sum_probs=114.0

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCC--CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKD--SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~--~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      +|.+.++.|||++...++|+++++++..  ...+.+...   .......+++++.++.|++. ...       ...|+++
T Consensus       412 a~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~---~~~~P~glavD~~~g~LY~t-D~~-------~~~I~v~  480 (699)
T 1n7d_A          412 DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---DIQAPDGLAVDWIHSNIYWT-DSV-------LGTVSVA  480 (699)
T ss_dssp             EEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS---CC--CCCEECCCSSSBCEEC-CTT-------TSCEEEE
T ss_pred             ccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC---CCCCcceEEEEeeCCcEEEE-ecc-------CCeEEEE
Confidence            5555577899998777899999997510  122222211   01123356677666666553 221       2469999


Q ss_pred             ECCCCCccCcEEeeec-CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcC
Q 008927          227 ALNGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (548)
Q Consensus       227 dl~~g~~~~~~~L~~~-~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~  305 (548)
                      ++++..   .+.|... ...-...+++|++.+|+|..+..      ...|++++++  |.. ...++...-    .....
T Consensus       481 d~dg~~---~~~l~~~~~~~P~giavDp~~g~ly~td~~~------~~~I~~~~~d--G~~-~~~l~~~~l----~~PnG  544 (699)
T 1n7d_A          481 DTKGVK---RKTLFREQGSKPRAIVVDPVHGFMYWTDWGT------PAKIKKGGLN--GVD-IYSLVTENI----QWPNG  544 (699)
T ss_dssp             BSSSCC---EEEECCCSSCCCCCEECCSSSSCCEECCCSS------SCCEEBCCSS--SCC-CCEESCSSC----SSCCC
T ss_pred             ecCCCc---eEEEEeCCCCCcceEEEccCCCcEEEcccCC------CCeEEEEeCC--CCC-eeEEEeCCC----CCccE
Confidence            998876   5555432 12233457899888887654321      2578888876  321 122222211    34567


Q ss_pred             ceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEE
Q 008927          306 PKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (548)
Q Consensus       306 ~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~  384 (548)
                      ++|+|+++ ||+ +|.  +...|+++++++...+.+.........|   .+   +++     +++.||++.  -+...|+
T Consensus       545 lavd~~~~~LY~-aD~--~~~~I~~~d~dG~~~~~~~~~~~~~~~P---~g---lav-----d~~~lywtd--~~~~~V~  608 (699)
T 1n7d_A          545 ITLDLLSGRLYW-VDS--KLHSISSIDVNGGNRKTILEDEKRLAHP---FS---LAV-----FEDKVFWTD--IINEAIF  608 (699)
T ss_dssp             EEECTTTCCEEE-EET--TTTEEEEECSSSSCCEEECCCSSSCSSC---CC---CEE-----ETTEEEEEC--STTTCEE
T ss_pred             EEEeccCCEEEE-Eec--CCCeEEEEccCCCceEEEEecCCcCCCc---eE---eEE-----ECCEEEEEe--CCCCeEE
Confidence            89999977 555 554  3357999998765555554221111111   11   233     456777654  2345678


Q ss_pred             EEECCCCce
Q 008927          385 ILDDFGHSL  393 (548)
Q Consensus       385 ~~dl~~g~~  393 (548)
                      +++..+|+.
T Consensus       609 ~~d~~~G~~  617 (699)
T 1n7d_A          609 SANRLTGSD  617 (699)
T ss_dssp             EEETTTEEE
T ss_pred             EEEccCCCc
Confidence            888766654

>3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp}

Probab=98.02  E-value=6.3e-06  Score=77.53  Aligned_cols=70  Identities=13%  Similarity=0.130  Sum_probs=53.9

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCCh
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSS  540 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~  540 (548)
                      .+.+++++  +|.+++++++.|.+.      .++.|+||++||.....  ..+....+.|+++||.|+.+|+||..|...
T Consensus         6 ~~~~~~~~--~~~~~~~~~~~p~~~------~~~~p~vv~~HG~~g~~--~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~   75 (241)
T 3f67_A            6 AGETSIPS--QGENMPAYHARPKNA------DGPLPIVIVVQEIFGVH--EHIRDLCRRLAQEGYLAIAPELYFRQGDPN   75 (241)
T ss_dssp             EEEEEEEE--TTEEEEEEEEEETTC------CSCEEEEEEECCTTCSC--HHHHHHHHHHHHTTCEEEEECTTTTTCCGG
T ss_pred             eeeEEEec--CCcceEEEEecCCCC------CCCCCEEEEEcCcCccC--HHHHHHHHHHHHCCcEEEEecccccCCCCC
Confidence            46788887  789999999999641      34679999999954322  335566788999999999999988766544

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.01  E-value=0.00014  Score=74.89  Aligned_cols=163  Identities=6%  Similarity=-0.039  Sum_probs=85.2

Q ss_pred             CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEE-------EcCCCCCcccCCcCceECcCC-cEE
Q 008927          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-------VAGFDPTIVESPTEPKWSSKG-ELF  315 (548)
Q Consensus       244 ~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~-------l~~~~~~~~~~~~~~~wspDG-~L~  315 (548)
                      ..+....|+|||+.|+- . .       ...|.+.++...+.  ....       +.+..    ..+....|+|+| +++
T Consensus       178 ~~v~~~~~~~~~~~l~s-~-~-------d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l  242 (447)
T 3dw8_B          178 YHINSISINSDYETYLS-A-D-------DLRINLWHLEITDR--SFNIVDIKPANMEELT----EVITAAEFHPNSCNTF  242 (447)
T ss_dssp             SCCCEEEECTTSSEEEE-E-C-------SSEEEEEETTEEEE--EEEEEECCCSSGGGCC----CCEEEEEECSSCTTEE
T ss_pred             cceEEEEEcCCCCEEEE-e-C-------CCeEEEEECCCCCc--eeeeeecccccccccC----cceEEEEECCCCCcEE
Confidence            34567789999998873 3 2       24688888863222  1121       11222    456788999999 666


Q ss_pred             EEEeCCCCeeeEEEEeccCCee-----EeecccccccCCCc----ccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927          316 FVTDRKNGFWNLHKWIESNNEV-----LAIYSLDAEFSRPL----WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (548)
Q Consensus       316 ~~sd~~~g~~~Ly~~d~~~g~~-----~~l~~~~~d~~~p~----w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~  386 (548)
                      +.... +|  .|..+|+.+++.     +.+... .+.....    .........|.|   +++.|+ +...   ..|.++
T Consensus       243 ~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~-~~~~---~~v~iw  311 (447)
T 3dw8_B          243 VYSSS-KG--TIRLCDMRASALCDRHSKLFEEP-EDPSNRSFFSEIISSISDVKFSH---SGRYMM-TRDY---LSVKVW  311 (447)
T ss_dssp             EEEET-TS--CEEEEETTTCSSSCTTCEEECCC------CCHHHHHTTCEEEEEECT---TSSEEE-EEES---SEEEEE
T ss_pred             EEEeC-CC--eEEEEECcCCccccceeeEeccC-CCccccccccccCceEEEEEECC---CCCEEE-EeeC---CeEEEE
Confidence            66554 44  466677766653     222211 0000000    000122345654   666555 3333   456777


Q ss_pred             ECCC-Cc-eEeecCCCcee-----------------EeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          387 DDFG-HS-LSLLDIPFTDI-----------------DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       387 dl~~-g~-~~~l~~~~~~~-----------------~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      |+.. ++ +..+.......                 -.++++++.| ++++.   ...|+++|+.+++.
T Consensus       312 d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l-~s~s~---dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          312 DLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV-MTGSY---NNFFRMFDRNTKRD  376 (447)
T ss_dssp             ETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE-EEECS---TTEEEEEETTTCCE
T ss_pred             eCCCCccccceeeccccccccccccccccccccceEEEECCCCCEE-EEecc---CCEEEEEEcCCCcc
Confidence            8765 43 22332211100                 1236777766 33332   36799999988764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.00  E-value=0.00085  Score=66.80  Aligned_cols=155  Identities=8%  Similarity=-0.031  Sum_probs=89.0

Q ss_pred             eeEE--ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          149 AFRI--FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       149 ~~~~--~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      .|.+  +++.++- ...++.|.+.++..  ++...+....  ....+....|+|||+.|+....+         ..|.++
T Consensus       132 ~~~~~~~~~~l~s-~s~dg~i~~wd~~~--~~~~~~~~~~--~~~~i~~~~~~pdg~~lasg~~d---------g~i~iw  197 (343)
T 3lrv_A          132 YGHNEVNTEYFIW-ADNRGTIGFQSYED--DSQYIVHSAK--SDVEYSSGVLHKDSLLLALYSPD---------GILDVY  197 (343)
T ss_dssp             ECCC---CCEEEE-EETTCCEEEEESSS--SCEEEEECCC--SSCCCCEEEECTTSCEEEEECTT---------SCEEEE
T ss_pred             EcCCCCCCCEEEE-EeCCCcEEEEECCC--CcEEEEEecC--CCCceEEEEECCCCCEEEEEcCC---------CEEEEE
Confidence            4556  5555543 44677888888876  5554433221  12236677899999987664322         368889


Q ss_pred             ECCCCCccCc-EEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCc
Q 008927          227 ALNGQNIQEP-KVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT  304 (548)
Q Consensus       227 dl~~g~~~~~-~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~  304 (548)
                      |+.+++.  . ..+.. ....+....|||||++|+-.. +       . .|.+.|+.....+.....+....    ..+.
T Consensus       198 d~~~~~~--~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~-------~-~v~iwd~~~~~~~~~~~~~~~~~----~~~~  262 (343)
T 3lrv_A          198 NLSSPDQ--ASSRFPVDEEAKIKEVKFADNGYWMVVEC-D-------Q-TVVCFDLRKDVGTLAYPTYTIPE----FKTG  262 (343)
T ss_dssp             ESSCTTS--CCEECCCCTTSCEEEEEECTTSSEEEEEE-S-------S-BEEEEETTSSTTCBSSCCCBC---------C
T ss_pred             ECCCCCC--CccEEeccCCCCEEEEEEeCCCCEEEEEe-C-------C-eEEEEEcCCCCcceeeccccccc----cccc
Confidence            9998872  2 34443 345577889999999888544 2       2 68888987532211111111111    1222


Q ss_pred             --CceECcCCcEEEEEeCCCCeeeEEEEec
Q 008927          305 --EPKWSSKGELFFVTDRKNGFWNLHKWIE  332 (548)
Q Consensus       305 --~~~wspDG~L~~~sd~~~g~~~Ly~~d~  332 (548)
                        ...|+|||+++++...+++.-.||.++.
T Consensus       263 ~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          263 TVTYDIDDSGKNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             CEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             ceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence              3899999994444322145556666543

>2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon}

Probab=98.00  E-value=9.2e-06  Score=80.20  Aligned_cols=73  Identities=16%  Similarity=0.180  Sum_probs=55.2

Q ss_pred             ccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccc-cccCccChHHHHHHhc-CcEEEEeCCCCC
Q 008927          458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSR-GWAFVDVNYGGS  535 (548)
Q Consensus       458 ~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~-~~~~~~~~~~Q~~asr-GyaVl~~NyRGS  535 (548)
                      ....+.+++++. +| ++++++|.|.+       +++.|+||++|||... .....|....+.|+.+ ||.|+.+||||.
T Consensus        45 ~~~~~~~~i~~~-~g-~i~~~~~~p~~-------~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~  115 (311)
T 2c7b_A           45 IAETRDVHIPVS-GG-SIRARVYFPKK-------AAGLPAVLYYHGGGFVFGSIETHDHICRRLSRLSDSVVVSVDYRLA  115 (311)
T ss_dssp             CSEEEEEEEEET-TE-EEEEEEEESSS-------CSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTCEEEEECCCCT
T ss_pred             cceEEEEEecCC-CC-cEEEEEEecCC-------CCCCcEEEEECCCcccCCChhhhHHHHHHHHHhcCCEEEEecCCCC
Confidence            335678889987 77 89999999953       2346999999999732 2223455667788886 999999999998


Q ss_pred             CCCC
Q 008927          536 TGLS  539 (548)
Q Consensus       536 tGyG  539 (548)
                      ....
T Consensus       116 g~~~  119 (311)
T 2c7b_A          116 PEYK  119 (311)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            7653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.99  E-value=0.0004  Score=69.78  Aligned_cols=193  Identities=9%  Similarity=0.022  Sum_probs=108.8

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEEC-CEEEEEeCCCCe
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-DTVIFSNYKDQR  166 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~-~~i~F~~~~~~~  166 (548)
                      ..+..+.++| +..++-..    .+|...||.....  ...+.+......+.       .-.|+++. +.++++...++.
T Consensus       155 ~~v~~~~~~~~~~~l~t~s----~D~~v~lwd~~~~--~~~~~~~~h~~~v~-------~~~~~~~~~g~~l~sgs~Dg~  221 (354)
T 2pbi_B          155 NYLSACSFTNSDMQILTAS----GDGTCALWDVESG--QLLQSFHGHGADVL-------CLDLAPSETGNTFVSGGCDKK  221 (354)
T ss_dssp             SCEEEEEECSSSSEEEEEE----TTSEEEEEETTTC--CEEEEEECCSSCEE-------EEEECCCSSCCEEEEEETTSC
T ss_pred             CcEEEEEEeCCCCEEEEEe----CCCcEEEEeCCCC--eEEEEEcCCCCCeE-------EEEEEeCCCCCEEEEEeCCCe
Confidence            3456677787 55554332    2466677765332  11222221111110       01344432 345555556788


Q ss_pred             EEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC-
Q 008927          167 LYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD-  244 (548)
Q Consensus       167 Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~-  244 (548)
                      |.+.++..  ++.. .+...    ...+....|+|+|+.|+....+         ..|.++|+.+++   ...+..... 
T Consensus       222 v~~wd~~~--~~~~~~~~~h----~~~v~~v~~~p~~~~l~s~s~D---------~~v~lwd~~~~~---~~~~~~~~~~  283 (354)
T 2pbi_B          222 AMVWDMRS--GQCVQAFETH----ESDVNSVRYYPSGDAFASGSDD---------ATCRLYDLRADR---EVAIYSKESI  283 (354)
T ss_dssp             EEEEETTT--CCEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTE---EEEEECCTTC
T ss_pred             EEEEECCC--CcEEEEecCC----CCCeEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCc---EEEEEcCCCc
Confidence            88889876  4443 33322    2345677899999987765433         257778988775   333332221 


Q ss_pred             --ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCC
Q 008927          245 --FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN  322 (548)
Q Consensus       245 --~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~  322 (548)
                        ......|||||+.|+-.. .       ...|.+.|+.. ++  ....+.+..    ..+....|+|||++++.... +
T Consensus       284 ~~~~~~~~~s~~g~~l~~g~-~-------d~~i~vwd~~~-~~--~~~~l~~h~----~~v~~l~~spdg~~l~sgs~-D  347 (354)
T 2pbi_B          284 IFGASSVDFSLSGRLLFAGY-N-------DYTINVWDVLK-GS--RVSILFGHE----NRVSTLRVSPDGTAFCSGSW-D  347 (354)
T ss_dssp             CSCEEEEEECTTSSEEEEEE-T-------TSCEEEEETTT-CS--EEEEECCCS----SCEEEEEECTTSSCEEEEET-T
T ss_pred             ccceeEEEEeCCCCEEEEEE-C-------CCcEEEEECCC-Cc--eEEEEECCC----CcEEEEEECCCCCEEEEEcC-C
Confidence              245678999999887433 2       34688889874 43  234454443    56788999999995445444 4


Q ss_pred             CeeeEE
Q 008927          323 GFWNLH  328 (548)
Q Consensus       323 g~~~Ly  328 (548)
                      +.-.||
T Consensus       348 ~~v~vW  353 (354)
T 2pbi_B          348 HTLRVW  353 (354)
T ss_dssp             SEEEEE
T ss_pred             CCEEec
Confidence            544443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.99  E-value=0.0045  Score=59.98  Aligned_cols=242  Identities=7%  Similarity=-0.010  Sum_probs=127.0

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +|+++ +.|+...  ++.|++-++.+  ++..++..... ....+....|+|+|+.|+....+         ..|.++|+
T Consensus        32 ~WS~~-~~lAvg~--D~tV~iWd~~t--g~~~~~~~~~~-~~~~V~~v~~~~~~~~l~sgs~D---------g~v~iw~~   96 (318)
T 4ggc_A           32 DWSSG-NVLAVAL--DNSVYLWSASS--GDILQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSS---------AEVQLWDV   96 (318)
T ss_dssp             EECTT-SEEEEEE--TTEEEEEETTT--CCEEEEEECCS-TTCCEEEEEECTTSSEEEEEETT---------SEEEEEET
T ss_pred             EECCC-CEEEEEe--CCEEEEEECCC--CCEEEEEEecC-CCCeEEEEEECCCCCEEEEEECC---------CcEEEeec
Confidence            56644 3666655  66788878876  55543322110 12345678899999987765433         36888899


Q ss_pred             CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      ++++   ......+... ....++++++.|+-.. .       ...+.+.+......  ....+.+..    ..+....|
T Consensus        97 ~~~~---~~~~~~~h~~-~~~~~~~~~~~l~s~~-~-------~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~  158 (318)
T 4ggc_A           97 QQQK---RLRNMTSHSA-RVGSLSWNSYILSSGS-R-------SGHIHHHDVRVAEH--HVATLSGHS----QEVCGLRW  158 (318)
T ss_dssp             TTTE---EEEEEECCSS-CEEEEEEETTEEEEEE-T-------TSEEEEEETTSSSC--EEEEEECCS----SCEEEEEE
T ss_pred             CCce---eEEEecCccc-eEEEeecCCCEEEEEe-c-------CCceEeeecCCCce--eEEEEcCcc----CceEEEEE
Confidence            9887   4333333222 1224677788766333 1       23455555543221  223333332    44567789


Q ss_pred             CcCCcEEEEEeCCCCeeeEEEEeccCCeeEeec-ccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927          309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (548)
Q Consensus       309 spDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~-~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d  387 (548)
                      +++|++++.... +|.  |.++|+.+++..... ........+     .....+.+   ++..++..........+.+.|
T Consensus       159 ~~~~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~---~~~~~~~~~~~~~~~~i~lwd  227 (318)
T 4ggc_A          159 APDGRHLASGGN-DNL--VNVWPSAPGEGGWVPLQTFTQHQGA-----VKAVAWCP---WQSNVLATGGGTSDRHIRIWN  227 (318)
T ss_dssp             CTTSSEEEEEET-TSC--EEEEESSCBTTBSCCSEEECCCCSC-----EEEEEECT---TSTTEEEEEECTTTCEEEEEE
T ss_pred             cCCCCEEEEEec-Ccc--eeEEECCCCcccccceeeecccCCc-----eEEEEecC---CCCcEEEEEecCCCCEEEEEe
Confidence            999995555544 443  555666665422111 000000001     01123332   445555554434444566677


Q ss_pred             CCCCceEeecCCCceeEe--eeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          388 DFGHSLSLLDIPFTDIDN--ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       388 l~~g~~~~l~~~~~~~~~--~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      ...+...........+..  +.++++.+++....  ....|+++|+.+++.
T Consensus       228 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~--~d~~i~iwd~~~~~~  276 (318)
T 4ggc_A          228 VCSGACLSAVDAHSQVCSILWSPHYKELISGHGF--AQNQLVIWKYPTMAK  276 (318)
T ss_dssp             TTTCCEEEEEECSSCEEEEEEETTTTEEEEEECT--TTCCEEEEETTTCCE
T ss_pred             cccccccccccceeeeeeeeecccccceEEEEEc--CCCEEEEEECCCCcE
Confidence            776655433322222222  35677777655432  235788899887763

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.98  E-value=0.0017  Score=66.89  Aligned_cols=202  Identities=12%  Similarity=0.062  Sum_probs=113.2

Q ss_pred             cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCc
Q 008927          194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA  273 (548)
Q Consensus       194 ~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~  273 (548)
                      ..++|+|+|+ |+++ ...       ...|+++|++++.   .+.+......-. +.|+|||+.|++.....      ..
T Consensus       134 ~~la~d~~g~-lyv~-d~~-------~~~I~~id~~~g~---~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~------~~  194 (409)
T 3hrp_A          134 WGIAAVGNNT-VLAY-QRD-------DPRVRLISVDDNK---VTTVHPGFKGGK-PAVTKDKQRVYSIGWEG------TH  194 (409)
T ss_dssp             EEEEECSTTE-EEEE-ETT-------TTEEEEEETTTTE---EEEEEETCCBCB-CEECTTSSEEEEEBSST------TC
T ss_pred             eEEEEeCCCC-EEEE-ecC-------CCcEEEEECCCCE---EEEeeccCCCCc-eeEecCCCcEEEEecCC------Cc
Confidence            3567999987 4443 332       2479999999987   666654433333 89999999876554221      22


Q ss_pred             eEEEEEecCCCceeeeEEE----cCCCCCcccCCcCceECc-CCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccC
Q 008927          274 ELWVGYISENGDVYKRVCV----AGFDPTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFS  348 (548)
Q Consensus       274 ~L~v~~~~~~g~~~~~~~l----~~~~~~~~~~~~~~~wsp-DG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~  348 (548)
                      .|++++.+. +..  ...+    ....    .......++| +|.||+ ++. .+  .|++++++++..+.+..... ..
T Consensus       195 ~I~~~d~~~-~~~--~~~~g~~~~~~~----~~p~~iav~p~~g~lyv-~d~-~~--~I~~~d~~~~~~~~~~~~~~-~g  262 (409)
T 3hrp_A          195 TVYVYMKAS-GWA--PTRIGQLGSTFS----GKIGAVALDETEEWLYF-VDS-NK--NFGRFNVKTQEVTLIKQLEL-SG  262 (409)
T ss_dssp             EEEEEEGGG-TTC--EEEEEECCTTSC----SCCCBCEECTTSSEEEE-ECT-TC--EEEEEETTTCCEEEEEECCC-CS
T ss_pred             eEEEEEcCC-Cce--eEEeeeccchhc----CCcEEEEEeCCCCeEEE-EEC-CC--cEEEEECCCCCEEEEecccc-cC
Confidence            799999874 321  1222    2111    3456788999 555777 554 33  79999998776554421100 01


Q ss_pred             CCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecC-C--------------CceeEee--eecCC
Q 008927          349 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI-P--------------FTDIDNI--TLGND  411 (548)
Q Consensus       349 ~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~-~--------------~~~~~~~--s~d~~  411 (548)
                      ...|.+ .+...+.|   +++.||++-  .+...|++++.++. ...+.. .              +..-.++  ++++.
T Consensus       263 ~~~~~P-~~~ia~~p---~~g~lyv~d--~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~  335 (409)
T 3hrp_A          263 SLGTNP-GPYLIYYF---VDSNFYMSD--QNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN  335 (409)
T ss_dssp             CCCCSS-CCEEEEET---TTTEEEEEE--TTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC
T ss_pred             CCCCCc-cccEEEeC---CCCEEEEEe--CCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC
Confidence            111110 01345653   567887653  34457888987643 443321 1              1112233  34444


Q ss_pred             EEEEEEecCCCCCeEEEEEcCCCce
Q 008927          412 CLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       412 ~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                       ||+. .. .....|.++++.++.+
T Consensus       336 -lyva-d~-~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          336 -FYIV-DG-FKGYCLRKLDILDGYV  357 (409)
T ss_dssp             -EEEE-ET-TTTCEEEEEETTTTEE
T ss_pred             -EEEE-eC-CCCCEEEEEECCCCEE
Confidence             5554 32 0246788999766764

>2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa}

Probab=97.98  E-value=9.4e-06  Score=81.76  Aligned_cols=68  Identities=18%  Similarity=0.161  Sum_probs=54.0

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccC-hHHHHHHhcCcEEEEeCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~-~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ..+.++|++. ||.++++++|.|.+.     +.++.|+||++||++....  .|. ...+.|+++||.|+.+|+||.
T Consensus        67 ~~~~~~~~~~-~g~~~~~~~~~p~~~-----~~~~~p~vv~~hG~~~~~~--~~~~~~~~~l~~~G~~v~~~d~~g~  135 (367)
T 2hdw_A           67 EHRKVTFANR-YGITLAADLYLPKNR-----GGDRLPAIVIGGPFGAVKE--QSSGLYAQTMAERGFVTLAFDPSYT  135 (367)
T ss_dssp             EEEEEEEECT-TSCEEEEEEEEESSC-----CSSCEEEEEEECCTTCCTT--SHHHHHHHHHHHTTCEEEEECCTTS
T ss_pred             eeEEEEEecC-CCCEEEEEEEeCCCC-----CCCCCCEEEEECCCCCcch--hhHHHHHHHHHHCCCEEEEECCCCc
Confidence            5688999997 999999999999641     2456799999999875332  233 357889999999999999984

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.98  E-value=0.0031  Score=63.42  Aligned_cols=245  Identities=9%  Similarity=0.026  Sum_probs=127.6

Q ss_pred             eeEE-ECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCC---------CCCCCceecceeeCC-CCCEEEEEEeccCCCC
Q 008927          149 AFRI-FGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPD---------YGEPLVSYADGIFDP-RFNRYVTVREDRRQDA  216 (548)
Q Consensus       149 ~~~~-~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~---------~~~~~~~~~~~~~Sp-DG~~i~~v~~~~~~~~  216 (548)
                      .|++ ++..|+. ...++.|.+.++..  ++.. .+...         .......+..+.|+| +++.|+....+     
T Consensus        50 ~~s~~~~~~l~~-~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----  121 (408)
T 4a11_B           50 DIEPVEGRYMLS-GGSDGVIVLYDLEN--SSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD-----  121 (408)
T ss_dssp             EECTTTCCEEEE-EETTSCEEEEECCC--CSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT-----
T ss_pred             EEecCCCCEEEE-EcCCCeEEEEECCC--CcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC-----
Confidence            4566 5555544 44567788878875  3221 11100         000123456778999 55555554322     


Q ss_pred             CCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCC---CCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEc
Q 008927          217 LNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPR---GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA  293 (548)
Q Consensus       217 ~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPD---Gk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~  293 (548)
                          ..|.++|+.+++   ...............|+|+   ++.|+... .       ...|++.++.. ++  ....+.
T Consensus       122 ----~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~v~~~d~~~-~~--~~~~~~  183 (408)
T 4a11_B          122 ----KTLKVWDTNTLQ---TADVFNFEETVYSHHMSPVSTKHCLVAVGT-R-------GPKVQLCDLKS-GS--CSHILQ  183 (408)
T ss_dssp             ----SEEEEEETTTTE---EEEEEECSSCEEEEEECSSCSSCCEEEEEE-S-------SSSEEEEESSS-SC--CCEEEC
T ss_pred             ----CeEEEeeCCCCc---cceeccCCCceeeeEeecCCCCCcEEEEEc-C-------CCeEEEEeCCC-cc--eeeeec
Confidence                468889999887   5444444444556677774   44666443 1       35689999974 43  234444


Q ss_pred             CCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCe--eEeecccccccC------CCcccccCcceeeeee
Q 008927          294 GFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE--VLAIYSLDAEFS------RPLWVFGINSYEIIQS  364 (548)
Q Consensus       294 ~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~--~~~l~~~~~d~~------~p~w~~~~~~~~~~~~  364 (548)
                      ...    ..+..+.|+|+++ +++.... +|.  |..+|+..++  ...+........      ............+.| 
T Consensus       184 ~~~----~~v~~~~~~~~~~~ll~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  255 (408)
T 4a11_B          184 GHR----QEILAVSWSPRYDYILATASA-DSR--VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-  255 (408)
T ss_dssp             CCC----SCEEEEEECSSCTTEEEEEET-TSC--EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-
T ss_pred             CCC----CcEEEEEECCCCCcEEEEEcC-CCc--EEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-
Confidence            433    4577889999999 7777665 554  5556654443  222211000000      000001112345654 


Q ss_pred             cCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCC------Cce--eEeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          365 HGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP------FTD--IDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       365 ~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~------~~~--~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                        +++.|+ +...++  .|.++|+.+++.......      ...  +......+..+++....    ..|.++|+.+++.
T Consensus       256 --~~~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~v~d~~~~~~  326 (408)
T 4a11_B          256 --DGLHLL-TVGTDN--RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG----STIAVYTVYSGEQ  326 (408)
T ss_dssp             --TSSEEE-EEETTS--CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET----TEEEEEETTTCCE
T ss_pred             --CCCEEE-EecCCC--eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC----CEEEEEECcCCcc
Confidence              555554 444455  466778877754322111      001  11112234445554432    5788999877763

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.97  E-value=2.3e-05  Score=78.98  Aligned_cols=120  Identities=11%  Similarity=0.186  Sum_probs=65.7

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCC
Q 008927          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (548)
Q Consensus       193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~  272 (548)
                      +..+.|+|||+.|+....+         ..|.++|+.++.......+....+.+....|+|||++|+....        .
T Consensus        14 v~~~~~s~~g~~l~~~~~d---------~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~--------d   76 (377)
T 3dwl_C           14 SYEHAFNSQRTEFVTTTAT---------NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ--------D   76 (377)
T ss_dssp             CSCCEECSSSSEEECCCSS---------SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET--------T
T ss_pred             EEEEEECCCCCEEEEecCC---------CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC--------C
Confidence            5567899999987664332         2456667666620002233333445677899999998885552        2


Q ss_pred             ceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCe
Q 008927          273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE  336 (548)
Q Consensus       273 ~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~  336 (548)
                      ..|.+.++...........+.+..    ..+....|+|||++++.... ++  .|..+++.+++
T Consensus        77 ~~v~vwd~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~  133 (377)
T 3dwl_C           77 RNAYVYEKRPDGTWKQTLVLLRLN----RAATFVRWSPNEDKFAVGSG-AR--VISVCYFEQEN  133 (377)
T ss_dssp             SSEEEC------CCCCEEECCCCS----SCEEEEECCTTSSCCEEEES-SS--CEEECCC----
T ss_pred             CeEEEEEcCCCCceeeeeEecccC----CceEEEEECCCCCEEEEEec-CC--eEEEEEECCcc
Confidence            458888887432121223333333    46778899999994444333 33  46666766654

>1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A

Probab=97.95  E-value=9.8e-06  Score=80.62  Aligned_cols=72  Identities=18%  Similarity=0.192  Sum_probs=55.0

Q ss_pred             CCeEEEeeccCCCe-EEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccc-ccCccChHHHHHHh-cCcEEEEeCCCCCC
Q 008927          460 LPELIEFPTEVPGQ-KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWTS-RGWAFVDVNYGGST  536 (548)
Q Consensus       460 ~pe~i~~~s~~dG~-~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~-~~~~~~~~~Q~~as-rGyaVl~~NyRGSt  536 (548)
                      ..+.+++++. ||. ++++++|.|.+.      .++.|+||++|||+... ....|......|+. .||.|+.+||||..
T Consensus        50 ~~~~~~i~~~-~g~~~l~~~~~~P~~~------~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~G~~Vv~~d~rg~~  122 (323)
T 1lzl_A           50 SLRELSAPGL-DGDPEVKIRFVTPDNT------AGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAP  122 (323)
T ss_dssp             EEEEEEECCS-TTCCCEEEEEEEESSC------CSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTT
T ss_pred             eEEEEEecCC-CCCceeEEEEEecCCC------CCCCcEEEEECCCccccCChhhhHHHHHHHHHhcCcEEEEecCCCCC
Confidence            4577888887 887 899999999641      34679999999998532 22345556677887 59999999999976


Q ss_pred             CC
Q 008927          537 GL  538 (548)
Q Consensus       537 Gy  538 (548)
                      ..
T Consensus       123 ~~  124 (323)
T 1lzl_A          123 ET  124 (323)
T ss_dssp             TS
T ss_pred             CC
Confidence            64

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.95  E-value=0.0013  Score=71.57  Aligned_cols=196  Identities=15%  Similarity=0.105  Sum_probs=120.0

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      .|.+.++.|||++...++|++++++|  +..+.+....   ...-..+++++.++.|++. +..       ...|.++++
T Consensus        43 ~~d~~~~~lywtD~~~~~I~r~~~~g--~~~~~v~~~g---~~~P~GlAvD~~~~~LY~t-D~~-------~~~I~v~~~  109 (628)
T 4a0p_A           43 DFDVTDNRIYWTDISLKTISRAFMNG--SALEHVVEFG---LDYPEGMAVDWLGKNLYWA-DTG-------TNRIEVSKL  109 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECSS---CSCCCEEEEETTTTEEEEE-ETT-------TTEEEEEET
T ss_pred             EEECCCCEEEEEECCCCeEEEEECCC--CCcEEEEeCC---CCCcceEEEEeCCCEEEEE-ECC-------CCEEEEEec
Confidence            55556789999998889999999987  5555543321   1123456778888887664 321       258999999


Q ss_pred             CCCCccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          229 NGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       229 ~~g~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      +++.   .+.|.. .-..-...++.|....|+|..|..      ...|+.+++++. .   .+.+...-    .....+.
T Consensus       110 dG~~---~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~------~~~I~r~~~dG~-~---~~~l~~~~----~~P~Gla  172 (628)
T 4a0p_A          110 DGQH---RQVLVWKDLDSPRALALDPAEGFMYWTEWGG------KPKIDRAAMDGS-E---RTTLVPNV----GRANGLT  172 (628)
T ss_dssp             TSTT---CEEEECSSCCCEEEEEEETTTTEEEEEECSS------SCEEEEEETTSC-S---CEEEECSC----SSEEEEE
T ss_pred             CCCc---EEEEEeCCCCCcccEEEccCCCeEEEeCCCC------CCEEEEEeCCCC-c---eEEEECCC----CCcceEE
Confidence            9886   666653 222234557898777888776532      468999998742 2   23332221    3445678


Q ss_pred             ECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (548)
Q Consensus       308 wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d  387 (548)
                      .+++++.+|.+|.  +...|++++++++..+.+..   ....|   .+   .+.     +++.||++-  -....|+++|
T Consensus       173 lD~~~~~LY~aD~--~~~~I~~~d~dG~~~~v~~~---~l~~P---~g---lav-----~~~~ly~tD--~~~~~I~~~d  234 (628)
T 4a0p_A          173 IDYAKRRLYWTDL--DTNLIESSNMLGLNREVIAD---DLPHP---FG---LTQ-----YQDYIYWTD--WSRRSIERAN  234 (628)
T ss_dssp             EETTTTEEEEEET--TTTEEEEEETTSCSCEEEEE---CCSCE---EE---EEE-----ETTEEEEEE--TTTTEEEEEE
T ss_pred             EccccCEEEEEEC--CCCEEEEEcCCCCceEEeec---cCCCc---eE---EEE-----ECCEEEEec--CCCCEEEEEE
Confidence            8888774444554  23478999987655543321   11112   11   233     456777653  2344678888


Q ss_pred             CCCCc
Q 008927          388 DFGHS  392 (548)
Q Consensus       388 l~~g~  392 (548)
                      ..+|+
T Consensus       235 k~tg~  239 (628)
T 4a0p_A          235 KTSGQ  239 (628)
T ss_dssp             TTTCC
T ss_pred             CCCCC
Confidence            76664

>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp}

Probab=97.94  E-value=1.1e-05  Score=77.97  Aligned_cols=68  Identities=12%  Similarity=0.106  Sum_probs=50.0

Q ss_pred             EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccc-cccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       464 i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~-~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      .+|.+. +|..++.|+..|..  ..  ++++.|+||++|||+.. .....+....+.|+++||.|+.+||||..
T Consensus        17 ~~~~~~-~g~~l~~~~~~~~~--~~--~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g   85 (276)
T 3hxk_A           17 STFSLN-DTAWVDFYQLQNPR--QN--ENYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYTVMN   85 (276)
T ss_dssp             EECCCB-TTBEEEEECCCC----------CCBCEEEEECCSTTTSCCGGGSHHHHHHHHHTTCEEEEEECCCTT
T ss_pred             ccccCC-CCeEEEEEEeCCcc--cc--cCCCCCEEEEEcCCccccCCchhhHHHHHHHHHCCCEEEEecCccCC
Confidence            456776 89999998877742  11  23677999999999844 33344556778999999999999999973

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.94  E-value=0.0005  Score=68.25  Aligned_cols=153  Identities=11%  Similarity=0.086  Sum_probs=88.8

Q ss_pred             CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCC-CCCceecceeeCCC----CCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG-EPLVSYADGIFDPR----FNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       154 ~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~-~~~~~~~~~~~SpD----G~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      ++.+++....++.|.+.++..+ ...+.+..... .....+....|+|+    |+.|+....+         ..|.++|+
T Consensus        33 ~~~~~~~~~~~~~v~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---------g~i~v~d~  102 (366)
T 3k26_A           33 GDPLVFATVGSNRVTLYECHSQ-GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR---------GIIRIINP  102 (366)
T ss_dssp             TSCEEEEEEETTEEEEEEECGG-GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT---------CEEEEECT
T ss_pred             CCceEEEECCCCEEEEEEcCCC-cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC---------CEEEEEEc
Confidence            3444444444556776676641 23333332100 01124567789998    4455544322         47889999


Q ss_pred             CCCCccCcEEeeecCCceeeeEECC-CCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEE---cCCCCCcccCCc
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV---AGFDPTIVESPT  304 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SP-DGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l---~~~~~~~~~~~~  304 (548)
                      .+++.  ...+......+....|+| |++.|+-...        ...|.+.++.. ++  ....+   .+..    ..+.
T Consensus       103 ~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~s~~~--------dg~i~iwd~~~-~~--~~~~~~~~~~~~----~~v~  165 (366)
T 3k26_A          103 ITMQC--IKHYVGHGNAINELKFHPRDPNLLLSVSK--------DHALRLWNIQT-DT--LVAIFGGVEGHR----DEVL  165 (366)
T ss_dssp             TTCCE--EEEEESCCSCEEEEEECSSCTTEEEEEET--------TSCEEEEETTT-TE--EEEEECSTTSCS----SCEE
T ss_pred             hhceE--eeeecCCCCcEEEEEECCCCCCEEEEEeC--------CCeEEEEEeec-Ce--EEEEeccccccc----Ccee
Confidence            98871  233433445577889999 8888774442        34688999874 43  23333   2322    4677


Q ss_pred             CceECcCCcEEEEEeCCCCeeeEEEEeccCCe
Q 008927          305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNE  336 (548)
Q Consensus       305 ~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~  336 (548)
                      ...|+|||++++.... +|  .|..+|+.+++
T Consensus       166 ~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~  194 (366)
T 3k26_A          166 SADYDLLGEKIMSCGM-DH--SLKLWRINSKR  194 (366)
T ss_dssp             EEEECTTSSEEEEEET-TS--CEEEEESCSHH
T ss_pred             EEEECCCCCEEEEecC-CC--CEEEEECCCCc
Confidence            8999999995555444 44  46666766654

>2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis}

Probab=97.94  E-value=1.3e-05  Score=74.25  Aligned_cols=64  Identities=11%  Similarity=0.054  Sum_probs=52.0

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      .+.+++++  ||.+++++++.|.+         +.|+||++||+......+.+....+.|+++||.|+.+|+||.
T Consensus        12 ~~~~~~~~--~g~~l~~~~~~p~~---------~~p~vv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~   75 (223)
T 2o2g_A           12 EYAVSVSV--GEVKLKGNLVIPNG---------ATGIVLFAHGSGSSRYSPRNRYVAEVLQQAGLATLLIDLLTQ   75 (223)
T ss_dssp             EEEEEEEE--TTEEEEEEEECCTT---------CCEEEEEECCTTCCTTCHHHHHHHHHHHHHTCEEEEECSSCH
T ss_pred             eeEEEEec--CCeEEEEEEecCCC---------CceEEEEecCCCCCCCccchHHHHHHHHHCCCEEEEEcCCCc
Confidence            46788886  79999999999842         469999999998665544445667889999999999999973

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.92  E-value=0.0012  Score=67.81  Aligned_cols=155  Identities=14%  Similarity=0.105  Sum_probs=82.6

Q ss_pred             CeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEecc-------CCCCC----CceeEEEEEECCCCC
Q 008927          165 QRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDR-------RQDAL----NSTTEIVAIALNGQN  232 (548)
Q Consensus       165 ~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~-------~~~~~----~~~~~l~~idl~~g~  232 (548)
                      +.|.++|.++  .+.+ .+..........| ++.|+||++. +++++-.       .-.+.    +....|.++|+++++
T Consensus       164 g~v~vlD~~T--~~v~~~~~~~~~~~~~~Y-d~~~~p~~~~-mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k  239 (462)
T 2ece_A          164 GGILMLDHYS--FEPLGKWEIDRGDQYLAY-DFWWNLPNEV-LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK  239 (462)
T ss_dssp             CEEEEECTTT--CCEEEECCSBCTTCCCCC-CEEEETTTTE-EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred             CeEEEEECCC--CeEEEEEccCCCCccccc-eEEECCCCCE-EEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence            6899999887  4543 4432211111122 5789999995 4554411       00000    234689999999875


Q ss_pred             ccCcEEeeecCC-c-eee--eEECCCCCEEEEEEec--CCCCCCCCceEEEEEecCCCceeeeEEE--cCCCC-C-c---
Q 008927          233 IQEPKVLVSGSD-F-YAF--PRMDPRGERMAWIEWH--HPNMPWDKAELWVGYISENGDVYKRVCV--AGFDP-T-I---  299 (548)
Q Consensus       233 ~~~~~~L~~~~~-~-~~~--p~~SPDGk~La~~~~~--~~~~p~~~~~L~v~~~~~~g~~~~~~~l--~~~~~-~-~---  299 (548)
                      .  ...|.-+.. . -..  +.++|||+++ |+...  ..+   ..++|+++..+. |++.....+  ..... . .   
T Consensus       240 ~--~~tI~vg~~g~~P~~i~f~~~Pdg~~a-YV~~e~~~~~---Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~  312 (462)
T 2ece_A          240 R--IHSLTLGEENRMALELRPLHDPTKLMG-FINMVVSLKD---LSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEI  312 (462)
T ss_dssp             E--EEEEESCTTEEEEEEEEECSSTTCCEE-EEEEEEETTT---CCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGG
T ss_pred             E--eeEEecCCCCCccceeEeeECCCCCEE-EEEEeeeccC---CCceEEEEEecC-CceeEEEEEeCCCcccccccccc
Confidence            2  233433311 1 111  2359999965 45422  111   145788877763 654333322  11000 0 0   


Q ss_pred             -------ccCCcCceECcCCcEEEEEeCCCCeeeEEEEec
Q 008927          300 -------VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE  332 (548)
Q Consensus       300 -------~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~  332 (548)
                             .........|+||+.+|+++++.+  .|..+++
T Consensus       313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d--~VavfdV  350 (462)
T 2ece_A          313 LKPFKAVPPLVTDIDISLDDKFLYLSLWGIG--EVRQYDI  350 (462)
T ss_dssp             GGGGTEECCCCCCEEECTTSCEEEEEETTTT--EEEEEEC
T ss_pred             ccccccCCCceeEEEECCCCCEEEEEeCCCC--EEEEEEe
Confidence                   023466789999997788887555  4555554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.92  E-value=0.0022  Score=64.86  Aligned_cols=97  Identities=2%  Similarity=-0.212  Sum_probs=56.4

Q ss_pred             CEEEEEeCCCC----eEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEec-cCCCCCCceeEEEEEEC
Q 008927          155 DTVIFSNYKDQ----RLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVRED-RRQDALNSTTEIVAIAL  228 (548)
Q Consensus       155 ~~i~F~~~~~~----~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~-~~~~~~~~~~~l~~idl  228 (548)
                      .++|-++..++    +|+++|.++  .+. ..+..+.     . ..+.+||||++|+..... .+...++.-+.|.+||+
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t--~~v~~~i~vG~-----~-P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~  103 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGC--GVTLGHSLGAF-----L-SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP  103 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTT--TEEEEEEEECT-----T-CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred             CeEEEECCccCCccceEEEEECCC--CeEEEEEeCCC-----C-CceEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            45555555444    899999987  443 2333221     1 257899999986554221 01011123468999999


Q ss_pred             CCCCccCcEEeeec--C-----CceeeeEECCCCCEEEEEE
Q 008927          229 NGQNIQEPKVLVSG--S-----DFYAFPRMDPRGERMAWIE  262 (548)
Q Consensus       229 ~~g~~~~~~~L~~~--~-----~~~~~p~~SPDGk~La~~~  262 (548)
                      .+++.  ...|.-+  .     ..-....+||||++|+ +.
T Consensus       104 ~T~~v--v~~I~v~~~~~~~~g~~P~~ia~SpDGk~ly-Va  141 (368)
T 1mda_H          104 VTFLP--IADIELPDAPRFSVGPRVHIIGNCASSACLL-FF  141 (368)
T ss_dssp             TTCCE--EEEEEETTSCSCCBSCCTTSEEECTTSSCEE-EE
T ss_pred             CCCCE--EEEEECCCccccccCCCcceEEEcCCCCEEE-EE
Confidence            99872  2334322  1     1123457999999875 54

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=97.91  E-value=0.0011  Score=73.01  Aligned_cols=202  Identities=11%  Similarity=0.046  Sum_probs=112.7

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L  167 (548)
                      ..+..+.++| |+.++--.    .+|...||.....  ...+.+......+.       .-+|++++..|+- ...++.|
T Consensus       431 ~~v~~v~~s~~g~~l~sgs----~Dg~v~vwd~~~~--~~~~~~~~h~~~v~-------~~~~s~~~~~l~s-~s~D~~i  496 (694)
T 3dm0_A          431 HFVEDVVLSSDGQFALSGS----WDGELRLWDLAAG--VSTRRFVGHTKDVL-------SVAFSLDNRQIVS-ASRDRTI  496 (694)
T ss_dssp             SCEEEEEECTTSSEEEEEE----TTSEEEEEETTTT--EEEEEEECCSSCEE-------EEEECTTSSCEEE-EETTSCE
T ss_pred             CcEEEEEECCCCCEEEEEe----CCCcEEEEECCCC--cceeEEeCCCCCEE-------EEEEeCCCCEEEE-EeCCCEE
Confidence            4566788888 65554332    2577777766432  12233322211111       1246666665543 4456667


Q ss_pred             EEEeCCCCCCCceecCCCCCCCCceecceeeCCCCC--EEEEEEeccCCCCCCceeEEEEEECCCCCccCcE-EeeecCC
Q 008927          168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFN--RYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK-VLVSGSD  244 (548)
Q Consensus       168 y~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~--~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~-~L~~~~~  244 (548)
                      .+.+..+  .....+..........+....|+|++.  .|+....+         ..|.++|+.+++   .. .+.....
T Consensus       497 ~iwd~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---------~~v~vwd~~~~~---~~~~~~~h~~  562 (694)
T 3dm0_A          497 KLWNTLG--ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD---------KTVKVWNLSNCK---LRSTLAGHTG  562 (694)
T ss_dssp             EEECTTS--CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT---------SCEEEEETTTCC---EEEEECCCSS
T ss_pred             EEEECCC--CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC---------CeEEEEECCCCc---EEEEEcCCCC
Confidence            7767654  323333221100112355678999873  44443222         358888998876   43 3333444


Q ss_pred             ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCe
Q 008927          245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGF  324 (548)
Q Consensus       245 ~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~  324 (548)
                      .+....|||||+.|+-.+.        ...|.+.|+.. ++  ....+.. .    ..+....|+||+.++..... .  
T Consensus       563 ~v~~v~~spdg~~l~sg~~--------Dg~i~iwd~~~-~~--~~~~~~~-~----~~v~~~~~sp~~~~l~~~~~-~--  623 (694)
T 3dm0_A          563 YVSTVAVSPDGSLCASGGK--------DGVVLLWDLAE-GK--KLYSLEA-N----SVIHALCFSPNRYWLCAATE-H--  623 (694)
T ss_dssp             CEEEEEECTTSSEEEEEET--------TSBCEEEETTT-TE--EEECCBC-S----SCEEEEEECSSSSEEEEEET-T--
T ss_pred             CEEEEEEeCCCCEEEEEeC--------CCeEEEEECCC-Cc--eEEEecC-C----CcEEEEEEcCCCcEEEEEcC-C--
Confidence            5777899999998874442        34678889874 43  1222222 1    34667899999985555433 2  


Q ss_pred             eeEEEEeccCCeeE
Q 008927          325 WNLHKWIESNNEVL  338 (548)
Q Consensus       325 ~~Ly~~d~~~g~~~  338 (548)
                       .|.++|+.+++..
T Consensus       624 -~i~iwd~~~~~~~  636 (694)
T 3dm0_A          624 -GIKIWDLESKSIV  636 (694)
T ss_dssp             -EEEEEETTTTEEE
T ss_pred             -CEEEEECCCCCCh
Confidence             3778888877653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.91  E-value=0.0019  Score=65.36  Aligned_cols=206  Identities=10%  Similarity=0.053  Sum_probs=111.3

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCC
Q 008927          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (548)
Q Consensus       192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~  271 (548)
                      .+....|+|||+.|+....+         ..|.++|+.+++.  ...+......+....|+|||+.|+-...        
T Consensus        68 ~V~~~~~sp~~~~l~s~s~D---------~~v~iWd~~~~~~--~~~~~~h~~~v~~~~~s~~g~~las~~~--------  128 (380)
T 3iz6_a           68 KVYSLDWTPEKNWIVSASQD---------GRLIVWNALTSQK--THAIKLHCPWVMECAFAPNGQSVACGGL--------  128 (380)
T ss_dssp             CEEEEEECTTSSCEEEEETT---------SEEEEEETTTTEE--EEEEECCCTTCCCCEECTTSSEEEECCS--------
T ss_pred             EEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCcc--ceEEecCCCCEEEEEECCCCCEEEEeeC--------
Confidence            45667899999987765433         3688889988761  2334434445667789999999874332        


Q ss_pred             CceEEEEEecCC----CceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccc
Q 008927          272 KAELWVGYISEN----GDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAE  346 (548)
Q Consensus       272 ~~~L~v~~~~~~----g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d  346 (548)
                      ...+.+.++...    +.....+.+.+..    ..+....|+|++. .++.... ++  .|..+|+.+++..........
T Consensus       129 d~~v~iw~~~~~~~~~~~~~~~~~~~gh~----~~v~~~~~~~~~~~~l~s~s~-D~--~i~~wd~~~~~~~~~~~~~~~  201 (380)
T 3iz6_a          129 DSACSIFNLSSQADRDGNMPVSRVLTGHK----GYASSCQYVPDQETRLITGSG-DQ--TCVLWDVTTGQRISIFGSEFP  201 (380)
T ss_dssp             SSCCEEEECCCCSSCCCSSTTCCBCCCCS----SCCCCCBCCSSSSSCEEEECT-TS--CEEEECTTTCCEEEEECCCSS
T ss_pred             CCcEEEEECCCCccccCCccceeeccCCC----cceEEEEEecCCCCEEEEECC-CC--cEEEEEcCCCcEEEEeecccC
Confidence            234556666531    1111122334433    4567788999866 5555443 33  466778877765443311100


Q ss_pred             cCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCC--ceEeecCCCceeEee--eecCCEEEEEEecCCC
Q 008927          347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH--SLSLLDIPFTDIDNI--TLGNDCLFVEGASGVE  422 (548)
Q Consensus       347 ~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g--~~~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~  422 (548)
                      .+....   .....+.+   .+..++++...++.-  .+.|+...  .++.+......+..+  ++++..++ .++.   
T Consensus       202 ~~h~~~---v~~~~~~~---~~~~~l~sgs~D~~v--~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~-s~s~---  269 (380)
T 3iz6_a          202 SGHTAD---VLSLSINS---LNANMFISGSCDTTV--RLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFG-TGSD---  269 (380)
T ss_dssp             SSCCSC---EEEEEECS---SSCCEEEEEETTSCE--EEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEE-EECS---
T ss_pred             CCCccC---eEEEEeec---CCCCEEEEEECCCeE--EEEECCCCCcceEEECCcCCCeEEEEEecCCCeEE-EEcC---
Confidence            011111   11223321   234455566666654  45576532  233443333334444  56776543 3332   


Q ss_pred             CCeEEEEEcCCCc
Q 008927          423 PSSVAKVTLDDHK  435 (548)
Q Consensus       423 p~~l~~~d~~~~~  435 (548)
                      -..|.++|+.+++
T Consensus       270 D~~i~lwd~~~~~  282 (380)
T 3iz6_a          270 DGTCRLFDMRTGH  282 (380)
T ss_dssp             SSCEEEEETTTTE
T ss_pred             CCeEEEEECCCCc
Confidence            2568888988775

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.90  E-value=0.008  Score=58.31  Aligned_cols=201  Identities=10%  Similarity=0.106  Sum_probs=106.2

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCC-ceecCCCCCCCCceecceeeCCC--CCEEEEEEeccCCCCCCceeEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~-~~~lT~~~~~~~~~~~~~~~SpD--G~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      +|+++|+.|+-. ..++.|.+.++.++..+ ...+...    ...+....|+|+  |+.|+....+         ..|.+
T Consensus        16 ~~s~~g~~las~-s~D~~v~iw~~~~~~~~~~~~l~gH----~~~V~~v~~s~~~~g~~l~s~s~D---------~~v~i   81 (297)
T 2pm7_B           16 VMDYYGKRMATC-SSDKTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTILASCSYD---------GKVMI   81 (297)
T ss_dssp             EECTTSSEEEEE-ETTSCEEEEEBCSSCBCCCEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------TEEEE
T ss_pred             EECCCCCEEEEE-eCCCEEEEEecCCCCcEEEEEEccc----cCCeEEEEecCCCcCCEEEEEcCC---------CEEEE
Confidence            455666665544 35666666666541012 2344433    223556778874  7776655433         35778


Q ss_pred             EECCCCCccCcEEeeecCCceeeeEECCC--CCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCC
Q 008927          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (548)
Q Consensus       226 idl~~g~~~~~~~L~~~~~~~~~p~~SPD--Gk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~  303 (548)
                      +|+.+++......+......+....|+||  |+.|+-...        ...|.+.++...+.. ....+.+..    ..+
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~--------d~~v~~wd~~~~~~~-~~~~~~~h~----~~v  148 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS--------DGKVSVVEFKENGTT-SPIIIDAHA----IGV  148 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET--------TSEEEEEEBCSSSCB-CCEEEECCS----SCE
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC--------CCcEEEEEecCCCce-eeeeeeccc----Ccc
Confidence            88887741112333333445677899998  887774442        356888888743221 123343333    456


Q ss_pred             cCceECcC-------------CcEEEEEeCCCCeeeEEEEeccCCe--eEeecccccccCCCcccccCcceeeeeecCCC
Q 008927          304 TEPKWSSK-------------GELFFVTDRKNGFWNLHKWIESNNE--VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEK  368 (548)
Q Consensus       304 ~~~~wspD-------------G~L~~~sd~~~g~~~Ly~~d~~~g~--~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~  368 (548)
                      ....|+|+             +++++.... ++.-.||-+  .+++  ...+....   +...++   ....|.|   ++
T Consensus       149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~-D~~v~lwd~--~~~~~~~~~~~~l~---~H~~~V---~~v~~sp---~~  216 (297)
T 2pm7_B          149 NSASWAPATIEEDGEHNGTKESRKFVTGGA-DNLVKIWKY--NSDAQTYVLESTLE---GHSDWV---RDVAWSP---TV  216 (297)
T ss_dssp             EEEEECCCC------------CCEEEEEET-TSCEEEEEE--ETTTTEEEEEEEEC---CCSSCE---EEEEECC---CC
T ss_pred             ceEeecCCcccccccCCCCCCcceEEEEcC-CCcEEEEEE--cCCCceEEEEEEec---CCCCce---EEEEECC---CC
Confidence            77889997             345555444 555555544  3433  11111000   111222   2245654   43


Q ss_pred             --CEEEEEEEeCCeEEEEEEEC
Q 008927          369 --NLIACSYRQNGRSYLGILDD  388 (548)
Q Consensus       369 --~~l~~~~~~~g~~~L~~~dl  388 (548)
                        +.++++...++.-.|+-++.
T Consensus       217 ~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          217 LLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             SSSEEEEEEETTSCEEEEEESS
T ss_pred             CCceEEEEEECCCcEEEEEeCC
Confidence              45666777777777765543

>3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1}

Probab=97.90  E-value=7.8e-06  Score=79.41  Aligned_cols=77  Identities=12%  Similarity=0.052  Sum_probs=55.0

Q ss_pred             ccCCeEEEeeccCCCeEEEEEEEcCCCC-CCCCCCCCCCcEEEEEccCcc-ccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          458 FSLPELIEFPTEVPGQKAYAYYYPPSNP-IYQASPEEKPPLLVKSHGGPT-SEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       458 ~~~pe~i~~~s~~dG~~i~g~l~~P~~~-~~~~~~~~~~Pliv~iHGGP~-~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ....+.|.|.+. +|..+...+| |.++ ++.  .+++.|+||++|||+. ......|....+.|+++||.|+.+||||+
T Consensus        16 ~~~~~~v~~~~~-~g~~~~~~~y-p~~~~~~~--~~~~~p~vv~lHGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~   91 (283)
T 3bjr_A           16 YFQGMQVIKQKL-TATCAQLTGY-LHQPDTNA--HQTNLPAIIIVPGGSYTHIPVAQAESLAMAFAGHGYQAFYLEYTLL   91 (283)
T ss_dssp             -CCSSEEEEEEC-TTSSCEEEEE-EC----------CCEEEEEEECCSTTTCCCHHHHHHHHHHHHTTTCEEEEEECCCT
T ss_pred             CCCCcceEEeec-CCCceeEEEe-cCCccccc--cCCCCcEEEEECCCccccCCccccHHHHHHHHhCCcEEEEEeccCC
Confidence            345678899987 8888888888 6431 111  2457799999999984 33334466677899999999999999997


Q ss_pred             CCC
Q 008927          536 TGL  538 (548)
Q Consensus       536 tGy  538 (548)
                      ...
T Consensus        92 ~~~   94 (283)
T 3bjr_A           92 TDQ   94 (283)
T ss_dssp             TTC
T ss_pred             Ccc
Confidence            764

>3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A

Probab=97.90  E-value=1.4e-05  Score=82.12  Aligned_cols=73  Identities=21%  Similarity=0.182  Sum_probs=54.8

Q ss_pred             CeEEEeecc-CCC--eEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccccc---------CccChHHHHHHhcCcEEE
Q 008927          461 PELIEFPTE-VPG--QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---------GILNLSIQYWTSRGWAFV  528 (548)
Q Consensus       461 pe~i~~~s~-~dG--~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~---------~~~~~~~Q~~asrGyaVl  528 (548)
                      ...|.|.+. .+|  ..+.|+++.|.+.  .  +.+++|+||++||++.....         ..+...++.|+++||+|+
T Consensus        46 ~~~i~y~t~~~~g~~~~~~g~l~~P~~~--~--~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~V~  121 (397)
T 3h2g_A           46 VAEFTYATIGVEGEPATASGVLLIPGGE--R--CSGPYPLLGWGHPTEALRAQEQAKEIRDAKGDDPLVTRLASQGYVVV  121 (397)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEEECT--T--CCSCEEEEEEECCCCCBTTCCHHHHHHHTTTCSHHHHTTGGGTCEEE
T ss_pred             EEEEEEEecCCCCCeEEEEEEEEeCCCC--C--CCCCCcEEEEeCCCcCCCCcccccccccccchHHHHHHHHHCCCEEE
Confidence            355777765 124  4699999999753  2  24578999999999875432         236677899999999999


Q ss_pred             EeCCCCCCC
Q 008927          529 DVNYGGSTG  537 (548)
Q Consensus       529 ~~NyRGStG  537 (548)
                      .+||||..+
T Consensus       122 ~~D~~G~G~  130 (397)
T 3h2g_A          122 GSDYLGLGK  130 (397)
T ss_dssp             EECCTTSTT
T ss_pred             EecCCCCCC
Confidence            999999754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.90  E-value=0.013  Score=60.34  Aligned_cols=186  Identities=11%  Similarity=0.050  Sum_probs=103.5

Q ss_pred             eeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEE
Q 008927          197 IFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELW  276 (548)
Q Consensus       197 ~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~  276 (548)
                      .++++++.|+....+         ..|.++|+.+++.  ...+...........|+|||+.|+-.. .       ...|.
T Consensus       275 ~~~~~~~~l~~~~~d---------~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~-~-------dg~i~  335 (464)
T 3v7d_B          275 TVSGHGNIVVSGSYD---------NTLIVWDVAQMKC--LYILSGHTDRIYSTIYDHERKRCISAS-M-------DTTIR  335 (464)
T ss_dssp             EEEEETTEEEEEETT---------SCEEEEETTTTEE--EEEECCCSSCEEEEEEETTTTEEEEEE-T-------TSCEE
T ss_pred             EEcCCCCEEEEEeCC---------CeEEEEECCCCcE--EEEecCCCCCEEEEEEcCCCCEEEEEe-C-------CCcEE
Confidence            357788877665433         3588889988761  223333344566778999999887443 1       34688


Q ss_pred             EEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccC
Q 008927          277 VGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGI  356 (548)
Q Consensus       277 v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~  356 (548)
                      +.++.. ++  ....+.+..    ..+....|+  +++++.... +|  .|..+|+.+++........    ..     .
T Consensus       336 vwd~~~-~~--~~~~~~~h~----~~v~~~~~~--~~~l~s~s~-dg--~v~vwd~~~~~~~~~~~~~----~~-----~  394 (464)
T 3v7d_B          336 IWDLEN-GE--LMYTLQGHT----ALVGLLRLS--DKFLVSAAA-DG--SIRGWDANDYSRKFSYHHT----NL-----S  394 (464)
T ss_dssp             EEETTT-TE--EEEEECCCS----SCEEEEEEC--SSEEEEEET-TS--EEEEEETTTCCEEEEEECT----TC-----C
T ss_pred             EEECCC-Cc--EEEEEeCCC----CcEEEEEEc--CCEEEEEeC-CC--cEEEEECCCCceeeeecCC----CC-----c
Confidence            999874 54  233444433    456667776  454444443 44  4666777665533222111    11     1


Q ss_pred             cceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEee-c-CCCceeEeeeecCCEEEEEEecCCCCCeEEEEE
Q 008927          357 NSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL-D-IPFTDIDNITLGNDCLFVEGASGVEPSSVAKVT  430 (548)
Q Consensus       357 ~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l-~-~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d  430 (548)
                      ....+.+   +++.|+ +.. ++  .+.++|+++|+.... . .....+..+..+++.+++..+. ....-++.+|
T Consensus       395 ~~~~~~~---~~~~l~-~~~-dg--~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~-~g~~~i~~ld  462 (464)
T 3v7d_B          395 AITTFYV---SDNILV-SGS-EN--QFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEK-DGQSFLEILD  462 (464)
T ss_dssp             CEEEEEE---CSSEEE-EEE-TT--EEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEE-TTEEEEEEEE
T ss_pred             cEEEEEe---CCCEEE-Eec-CC--eEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEe-CCeEEEEEee
Confidence            1123443   555544 433 44  577789988876532 2 2233455565667777666554 2233344444

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.90  E-value=0.0021  Score=62.71  Aligned_cols=203  Identities=10%  Similarity=-0.005  Sum_probs=105.2

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEE--CCEEEEEeCCCC
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNYKDQ  165 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~--~~~i~F~~~~~~  165 (548)
                      ..+..+.++| |+.++-..    .+|...||.....  ....++...-......+.   .-.|++.  +..|+ +...++
T Consensus        12 ~~v~~~~~~~~~~~l~~~~----~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~v~---~~~~~~~~d~~~l~-s~~~dg   81 (351)
T 3f3f_A           12 DLVHDVVYDFYGRHVATCS----SDQHIKVFKLDKD--TSNWELSDSWRAHDSSIV---AIDWASPEYGRIIA-SASYDK   81 (351)
T ss_dssp             SCEEEEEECSSSSEEEEEE----TTSEEEEEEECSS--SCCEEEEEEEECCSSCEE---EEEECCGGGCSEEE-EEETTS
T ss_pred             cceeEEEEcCCCCEEEEee----CCCeEEEEECCCC--CCcceecceeccCCCcEE---EEEEcCCCCCCEEE-EEcCCC
Confidence            4577889999 66554432    2577788877543  122122110000011111   1245553  44444 444567


Q ss_pred             eEEEEeCCCCCC-------C-ceecCCCCCCCCceecceeeCCC--CCEEEEEEeccCCCCCCceeEEEEEECCCCCccC
Q 008927          166 RLYKHSIDSKDS-------S-PLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (548)
Q Consensus       166 ~Ly~~~~~~~~~-------~-~~~lT~~~~~~~~~~~~~~~SpD--G~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~  235 (548)
                      .|.+.++..+..       + ...+...    ...+..+.|+|+  ++.|+....+         ..|.++|+.+++.  
T Consensus        82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~~d---------g~v~iwd~~~~~~--  146 (351)
T 3f3f_A           82 TVKLWEEDPDQEECSGRRWNKLCTLNDS----KGSLYSVKFAPAHLGLKLACLGND---------GILRLYDALEPSD--  146 (351)
T ss_dssp             CEEEEEECTTSCTTSSCSEEEEEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------CEEEEEECSSTTC--
T ss_pred             eEEEEecCCCcccccccCcceeeeeccc----CCceeEEEEcCCCCCcEEEEecCC---------CcEEEecCCChHH--
Confidence            676667654101       0 1122222    234667889999  8887775433         3688889887752  


Q ss_pred             cEEee-------------ecCCceeeeEECCC---CCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCc
Q 008927          236 PKVLV-------------SGSDFYAFPRMDPR---GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI  299 (548)
Q Consensus       236 ~~~L~-------------~~~~~~~~p~~SPD---Gk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~  299 (548)
                      ...+.             ..........|+|+   ++.|+... .       ...+.+.+.. .+.......+.+..   
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~-------~~~~~~~~~~-~~~~~~~~~~~~h~---  214 (351)
T 3f3f_A          147 LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA-L-------EQAIIYQRGK-DGKLHVAAKLPGHK---  214 (351)
T ss_dssp             TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE-T-------TEEEEEEECT-TSCEEEEEECCCCC---
T ss_pred             hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec-C-------CCcEEEEccC-CCceeeeeecCCCC---
Confidence            11111             11122456789997   88777544 1       2234333333 34432223333332   


Q ss_pred             ccCCcCceECcCC----cEEEEEeCCCCeeeEEEE
Q 008927          300 VESPTEPKWSSKG----ELFFVTDRKNGFWNLHKW  330 (548)
Q Consensus       300 ~~~~~~~~wspDG----~L~~~sd~~~g~~~Ly~~  330 (548)
                       ..+....|+|+|    ++++.... +|.-.||-+
T Consensus       215 -~~i~~~~~~p~~~~~~~~l~s~~~-dg~i~iwd~  247 (351)
T 3f3f_A          215 -SLIRSISWAPSIGRWYQLIATGCK-DGRIRIFKI  247 (351)
T ss_dssp             -SCEEEEEECCCSSCSSEEEEEEET-TSCEEEEEE
T ss_pred             -cceeEEEECCCCCCcceEEEEEcC-CCeEEEEeC
Confidence             457788999998    66556554 555444444

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.89  E-value=0.0045  Score=61.21  Aligned_cols=199  Identities=9%  Similarity=0.072  Sum_probs=100.3

Q ss_pred             EEECCEEEEEeCCCCeEEEEeCCCCCCCce---ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       151 ~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~---~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      .++++ ++.+...++.|.+.++..  +..+   .+....  ....+....|+|||+.|+....+.         .|.++|
T Consensus        21 ~~s~~-~las~~~D~~i~lw~~~~--~~~~~~~~~~~~~--h~~~v~~v~~sp~~~~las~s~D~---------~v~iw~   86 (330)
T 2hes_X           21 DFSQG-ILATGSTDRKIKLVSVKY--DDFTLIDVLDETA--HKKAIRSVAWRPHTSLLAAGSFDS---------TVSIWA   86 (330)
T ss_dssp             EEETT-EEEEEESSSCEEEEECSS--SCCEEEEEECTTC--CCSCEEEEEECTTSSEEEEEETTS---------CEEEEE
T ss_pred             ccCCC-EEEEEcCCCEEEEEEecC--CCeEEEEEEecCC--ccCCEEEEEECCCCCEEEEEeCCC---------cEEEEE
Confidence            34455 444545567777777764  3222   231110  122456778999999877654432         355566


Q ss_pred             CCCCCc--cCc---EEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc-eeeeEEEcCCCCCccc
Q 008927          228 LNGQNI--QEP---KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVE  301 (548)
Q Consensus       228 l~~g~~--~~~---~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~-~~~~~~l~~~~~~~~~  301 (548)
                      +..+..  ...   ..+....+.+....|||||++|+-.+.        ...|.+.++...+. ......+.+..    .
T Consensus        87 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~--------D~~v~iwd~~~~~~~~~~~~~~~~h~----~  154 (330)
T 2hes_X           87 KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR--------DKSVWIWETDESGEEYECISVLQEHS----Q  154 (330)
T ss_dssp             C-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET--------TSCEEEEECCTTCCCCEEEEEECCCS----S
T ss_pred             cccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC--------CCEEEEEeccCCCCCeEEEEEeccCC----C
Confidence            643210  001   223333344667899999999885442        24578888843332 11123344433    4


Q ss_pred             CCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCC-CEEEEEEEeCCe
Q 008927          302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEK-NLIACSYRQNGR  380 (548)
Q Consensus       302 ~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~-~~l~~~~~~~g~  380 (548)
                      .+....|+|||++++.... ++.-.||  +..++..+.+.... ....+.|     ...|.|   ++ ..++++...++.
T Consensus       155 ~v~~v~~~p~~~~l~s~s~-D~~i~iW--~~~~~~~~~~~~~~-~h~~~v~-----~~~~~~---~~~~~~l~s~s~D~~  222 (330)
T 2hes_X          155 DVKHVIWHPSEALLASSSY-DDTVRIW--KDYDDDWECVAVLN-GHEGTVW-----SSDFDK---TEGVFRLCSGSDDST  222 (330)
T ss_dssp             CEEEEEECSSSSEEEEEET-TSCEEEE--EEETTEEEEEEEEC-CCSSCEE-----EEEECC---SSSSCEEEEEETTSC
T ss_pred             ceEEEEECCCCCEEEEEcC-CCeEEEE--ECCCCCeeEEEEcc-CCCCcEE-----EEEecC---CCCeeEEEEEeCCCe
Confidence            5778899999996666544 5554555  44344322221100 0111122     133443   32 334556666777


Q ss_pred             EEEEEEE
Q 008927          381 SYLGILD  387 (548)
Q Consensus       381 ~~L~~~d  387 (548)
                      -+||-+.
T Consensus       223 v~iw~~~  229 (330)
T 2hes_X          223 VRVWKYM  229 (330)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            6676554

>1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A*

Probab=97.89  E-value=5.2e-06  Score=77.82  Aligned_cols=65  Identities=17%  Similarity=0.203  Sum_probs=51.8

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG  537 (548)
                      |.+++++. ||.+++++++.|.+        ++.|+||++||++....  .|....+.|+++||.|+.+|+||...
T Consensus         4 ~~~~~~~~-~g~~l~~~~~~p~~--------~~~p~vv~~hG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~g~g~   68 (236)
T 1zi8_A            4 EGISIQSY-DGHTFGALVGSPAK--------APAPVIVIAQDIFGVNA--FMRETVSWLVDQGYAAVCPDLYARQA   68 (236)
T ss_dssp             TTCCEECT-TSCEECEEEECCSS--------CSEEEEEEECCTTBSCH--HHHHHHHHHHHTTCEEEEECGGGGTS
T ss_pred             ceEEEecC-CCCeEEEEEECCCC--------CCCCEEEEEcCCCCCCH--HHHHHHHHHHhCCcEEEeccccccCC
Confidence            34667887 99999999999942        45799999999875543  45566788999999999999987644

>2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36

Probab=97.89  E-value=2.2e-05  Score=74.73  Aligned_cols=67  Identities=16%  Similarity=0.294  Sum_probs=50.0

Q ss_pred             CCe--EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccccc---CccChHHHHHHhcCcEEEEeCCCC
Q 008927          460 LPE--LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---GILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       460 ~pe--~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~---~~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      ..|  .+++++. || +++++++.|.+        ++.|+||++||.+.....   ..|....+.|+++||.|+.+|+||
T Consensus        20 ~~e~~~~~~~~~-~g-~l~~~~~~p~~--------~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g   89 (249)
T 2i3d_A           20 QGHMPEVIFNGP-AG-RLEGRYQPSKE--------KSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRS   89 (249)
T ss_dssp             ----CEEEEEET-TE-EEEEEEECCSS--------TTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTT
T ss_pred             cCceeEEEEECC-Cc-eEEEEEEcCCC--------CCCCEEEEECCCcccCCCccchHHHHHHHHHHHCCCEEEEECCCC
Confidence            456  8999997 88 89999999842        456999999997643211   123456788999999999999998


Q ss_pred             CC
Q 008927          535 ST  536 (548)
Q Consensus       535 St  536 (548)
                      ..
T Consensus        90 ~G   91 (249)
T 2i3d_A           90 IG   91 (249)
T ss_dssp             ST
T ss_pred             CC
Confidence            53

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.86  E-value=0.0025  Score=65.71  Aligned_cols=128  Identities=8%  Similarity=-0.134  Sum_probs=72.8

Q ss_pred             CCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCC-CC--CCCceE
Q 008927          199 DPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPN-MP--WDKAEL  275 (548)
Q Consensus       199 SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~-~p--~~~~~L  275 (548)
                      .||++++ ||.......   ..+.|.+||+++++.  ...+.-+.. - ...+||||++|+ +...... ..  -....|
T Consensus        81 ~~~~~~v-yV~n~~~~~---~~~~VsVID~~t~~v--v~~I~vG~~-P-gia~SpDgk~ly-Van~~~~~~~~G~~~~~V  151 (426)
T 3c75_H           81 APDARRV-YIQDPAHFA---AITQQFVIDGSTGRI--LGMTDGGFL-P-HPVAAEDGSFFA-QASTVFERIARGKRTDYV  151 (426)
T ss_dssp             CCCTTEE-EEEECTTTC---SSEEEEEEETTTTEE--EEEEEECSS-C-EEEECTTSSCEE-EEEEEEEETTEEEEEEEE
T ss_pred             CCCCCEE-EEECCCcCC---CCCeEEEEECCCCEE--EEEEECCCC-C-ceEECCCCCEEE-EEeccccccccCCCCCEE
Confidence            4688875 554332100   116899999999872  334444433 3 678999999876 4421100 00  013468


Q ss_pred             EEEEecCCCceeeeEEEcCCCCCc--ccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeE
Q 008927          276 WVGYISENGDVYKRVCVAGFDPTI--VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL  338 (548)
Q Consensus       276 ~v~~~~~~g~~~~~~~l~~~~~~~--~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~  338 (548)
                      .++|... +++.....+.+.. ..  ......+.++|||+.+|+++. .....|..+|++++++.
T Consensus       152 sviD~~t-~~vv~~I~v~g~~-r~~~g~~P~~~~~spDGk~lyV~n~-~~~~~VsVID~~t~kvv  213 (426)
T 3c75_H          152 EVFDPVT-FLPIADIELPDAP-RFLVGTYQWMNALTPDNKNLLFYQF-SPAPAVGVVDLEGKTFD  213 (426)
T ss_dssp             EEECTTT-CCEEEEEEETTCC-CCCBSCCGGGSEECTTSSEEEEEEC-SSSCEEEEEETTTTEEE
T ss_pred             EEEECCC-CcEEEEEECCCcc-ccccCCCcceEEEcCCCCEEEEEec-CCCCeEEEEECCCCeEE
Confidence            9999874 4432222233111 00  023457899999996666554 22346888999888754

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.85  E-value=0.0015  Score=69.55  Aligned_cols=167  Identities=10%  Similarity=-0.014  Sum_probs=91.1

Q ss_pred             ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceee-C-CCCCEEEEEEeccC---------CCCCCcee
Q 008927          153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIF-D-PRFNRYVTVREDRR---------QDALNSTT  221 (548)
Q Consensus       153 ~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~-S-pDG~~i~~v~~~~~---------~~~~~~~~  221 (548)
                      ||++|+..+..+.+|-++|++.  .+..++...+.  ......+.+ + ||+++|++..+...         +.+++..+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t--~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDV--MKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTT--TEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCC--ceEeeEEeCCC--CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence            5555655555567999999987  55444333210  112334454 5 99999755432210         12345677


Q ss_pred             EEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCC-C-------CC---------------------
Q 008927          222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP-W-------DK---------------------  272 (548)
Q Consensus       222 ~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p-~-------~~---------------------  272 (548)
                      .+-+||.++.+.  ..++.-+. .......||||++++..+.+. ++- +       ..                     
T Consensus       176 ~vtvID~~t~~v--~~qI~Vgg-~pd~~~~spdGk~~~vt~~~s-e~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~  251 (595)
T 1fwx_A          176 VFTAVDADKWEV--AWQVLVSG-NLDNCDADYEGKWAFSTSYNS-EKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  251 (595)
T ss_dssp             EEEEEETTTTEE--EEEEEESS-CCCCEEECSSSSEEEEEESCT-TCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             eEEEEECCCCeE--EEEEEeCC-CccceEECCCCCEEEEEecCc-ccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence            899999998762  22333222 234557899999876555332 210 0       00                     


Q ss_pred             --ceEEEEEecCC-CceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCC
Q 008927          273 --AELWVGYISEN-GDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN  335 (548)
Q Consensus       273 --~~L~v~~~~~~-g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g  335 (548)
                        ..+-++|.... ++. -...+.-.     .+.....++|||+.+|+++..+  ..+..+|.++.
T Consensus       252 ~i~~V~VID~~~~~~~~-~~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s--~~VsVid~~~~  309 (595)
T 1fwx_A          252 ELNGVKVVDGRKEASSL-FTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLS--PTVTVLDVTRF  309 (595)
T ss_dssp             EETTEEEEECSGGGCCS-SEEEEEEE-----SSCCCEEECTTSSEEEEECTTS--SBEEEEEGGGH
T ss_pred             EECcEEEEeCcccCCce-eEEEEecC-----CCceEEEEcCCCCEEEEeCCCC--CeEEEEECccc
Confidence              12445554420 110 01122111     2346678999999888887633  46777777643

>3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A

Probab=97.85  E-value=7.9e-06  Score=81.47  Aligned_cols=71  Identities=10%  Similarity=-0.011  Sum_probs=48.3

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccc-cCccChHHHHHHh-cCcEEEEeCCCCCCCC
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILNLSIQYWTS-RGWAFVDVNYGGSTGL  538 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~-~~~~~~~~Q~~as-rGyaVl~~NyRGStGy  538 (548)
                      ++.++++.. ++..|++++|.|.+       .++.|+||++|||..... ...+......|+. .||+|+.+|||++.++
T Consensus        54 ~~~~~~~~~-~~~~i~~~~~~p~~-------~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~  125 (322)
T 3fak_A           54 ADDIQVEQV-TVAGCAAEWVRAPG-------CQAGKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEH  125 (322)
T ss_dssp             CTTCEEEEE-EETTEEEEEEECTT-------CCTTCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTSEEEEECCCCTTTS
T ss_pred             CCCeeEEEE-eeCCeEEEEEeCCC-------CCCccEEEEEcCCccccCChHHHHHHHHHHHHhcCCEEEEEeCCCCCCC
Confidence            333444433 33348999999954       346799999999975432 2234444556665 6999999999999875


Q ss_pred             C
Q 008927          539 S  539 (548)
Q Consensus       539 G  539 (548)
                      .
T Consensus       126 ~  126 (322)
T 3fak_A          126 P  126 (322)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.84  E-value=0.00041  Score=73.67  Aligned_cols=190  Identities=9%  Similarity=-0.006  Sum_probs=105.9

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCC-CCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGE-PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~-~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      +|+|+|..|+-.+ .++.+.+.+.+   +....+. .... ....+..++|||||+.|+...++         ..|-++|
T Consensus        92 awSPdG~~LAs~s-~dg~V~iwd~~---~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D---------GtVkIWd  157 (588)
T 2j04_A           92 KPSPIDDWMAVLS-NNGNVSVFKDN---KMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED---------GELQFFS  157 (588)
T ss_dssp             EECSSSSCEEEEE-TTSCEEEEETT---EEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT---------SEEEEEE
T ss_pred             EECCCCCEEEEEe-CCCcEEEEeCC---ceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC---------CEEEEEE
Confidence            7889998887654 45556655643   2222333 2100 01236678999999998776443         3677788


Q ss_pred             CCCCCccCc-----EEeee----cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCcee-eeEEEc-CCC
Q 008927          228 LNGQNIQEP-----KVLVS----GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY-KRVCVA-GFD  296 (548)
Q Consensus       228 l~~g~~~~~-----~~L~~----~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~-~~~~l~-~~~  296 (548)
                      +.++...++     ..+..    ..+.+...+|||||  |+-.+.        ...+++.++++ +... ..+.+. +..
T Consensus       158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~--------D~tVrlWd~~~-~~~~~~~~tL~~~h~  226 (588)
T 2j04_A          158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS--------NNSVFSMTVSA-SSHQPVSRMIQNASR  226 (588)
T ss_dssp             CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET--------TCCEEEECCCS-SSSCCCEEEEECCCS
T ss_pred             CCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC--------CCeEEEEECCC-Cccccceeeeccccc
Confidence            888751111     23321    12356778999999  543331        24578888874 3311 122342 322


Q ss_pred             CCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceee--eeecCCCCEEEE
Q 008927          297 PTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEI--IQSHGEKNLIAC  373 (548)
Q Consensus       297 ~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~--~~~~~d~~~l~~  373 (548)
                          ..+....|+  |+ |+-.++     ..|.++++.+++...+...     ....   .....+  .    .++..+.
T Consensus       227 ----~~V~svaFs--g~~LASa~~-----~tIkLWd~~~~~~~~~~~g-----h~~~---V~~va~~~s----~d~~~La  283 (588)
T 2j04_A          227 ----RKITDLKIV--DYKVVLTCP-----GYVHKIDLKNYSISSLKTG-----SLEN---FHIIPLNHE----KESTILL  283 (588)
T ss_dssp             ----SCCCCEEEE--TTEEEEECS-----SEEEEEETTTTEEEEEECS-----CCSC---CCEEEETTC----SSCEEEE
T ss_pred             ----CcEEEEEEE--CCEEEEEeC-----CeEEEEECCCCeEEEEEcC-----CCce---EEEEEeeeC----CCCCEEE
Confidence                468889999  46 443332     2788888888776443311     1111   112344  4    3345555


Q ss_pred             EEEeCCeEEEEEEE
Q 008927          374 SYRQNGRSYLGILD  387 (548)
Q Consensus       374 ~~~~~g~~~L~~~d  387 (548)
                      ++.++|. +|+.+|
T Consensus       284 ~a~edG~-klw~~d  296 (588)
T 2j04_A          284 MSNKTSY-KVLLED  296 (588)
T ss_dssp             ECSSCEE-EEEESS
T ss_pred             EEcCCCC-EEEeec
Confidence            6666777 777653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.84  E-value=0.0025  Score=62.03  Aligned_cols=237  Identities=10%  Similarity=0.043  Sum_probs=119.9

Q ss_pred             CEEEEE-------eCCCCeEEEEeCCCCCCCceecCCCC-CCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          155 DTVIFS-------NYKDQRLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       155 ~~i~F~-------~~~~~~Ly~~~~~~~~~~~~~lT~~~-~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      +.|++.       ...++.|+++++.+  ++.+.+.... .........+.+++|+..|++. ...        ..|+++
T Consensus        29 g~l~~~~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~--------~~l~~~   97 (314)
T 1pjx_A           29 GDFYIVAPEVEVNGKPAGEILRIDLKT--GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMR--------LGLLVV   97 (314)
T ss_dssp             SCEEEEETTCEETTEECCEEEEECTTT--CCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETT--------TEEEEE
T ss_pred             CCEEEEEeccccCCCCCCEEEEEeCCC--CcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECC--------CCEEEE
Confidence            367777       34467899999876  5665554300 0001124456789993344443 221        269999


Q ss_pred             ECCCCCccCcEEe-eecC-----CceeeeEECCCCCEEEEEEecCC--------CCCCCCceEEEEEecCCCceeeeEEE
Q 008927          227 ALNGQNIQEPKVL-VSGS-----DFYAFPRMDPRGERMAWIEWHHP--------NMPWDKAELWVGYISENGDVYKRVCV  292 (548)
Q Consensus       227 dl~~g~~~~~~~L-~~~~-----~~~~~p~~SPDGk~La~~~~~~~--------~~p~~~~~L~v~~~~~~g~~~~~~~l  292 (548)
                      |.+ ++   .+.+ ....     .......++|||+ |.+......        ........|+.++.+  +++.  ...
T Consensus        98 d~~-g~---~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~--~~~  168 (314)
T 1pjx_A           98 QTD-GT---FEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMI--QVD  168 (314)
T ss_dssp             ETT-SC---EEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEE--EEE
T ss_pred             eCC-CC---EEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC--CCEE--Eec
Confidence            998 76   5555 3211     1234567899997 433332110        000012468877754  4421  112


Q ss_pred             cCCCCCcccCCcCceEC----cCCcEEEEEeCCCCeeeEEEEecc-CCeeEe---eccccccc-CCCcccccCcceeeee
Q 008927          293 AGFDPTIVESPTEPKWS----SKGELFFVTDRKNGFWNLHKWIES-NNEVLA---IYSLDAEF-SRPLWVFGINSYEIIQ  363 (548)
Q Consensus       293 ~~~~~~~~~~~~~~~ws----pDG~L~~~sd~~~g~~~Ly~~d~~-~g~~~~---l~~~~~d~-~~p~w~~~~~~~~~~~  363 (548)
                      .. .    .......|+    |||+.+|+++...  ..|++++++ +++...   +....... ..|      ....+. 
T Consensus       169 ~~-~----~~~~~i~~~~~~d~dg~~l~v~~~~~--~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p------~~i~~d-  234 (314)
T 1pjx_A          169 TA-F----QFPNGIAVRHMNDGRPYQLIVAETPT--KKLWSYDIKGPAKIENKKVWGHIPGTHEGGA------DGMDFD-  234 (314)
T ss_dssp             EE-E----SSEEEEEEEECTTSCEEEEEEEETTT--TEEEEEEEEETTEEEEEEEEEECCCCSSCEE------EEEEEB-
T ss_pred             cC-C----CCcceEEEecccCCCCCEEEEEECCC--CeEEEEECCCCCccccceEEEECCCCCCCCC------CceEEC-
Confidence            11 1    223457899    9998444554313  357777765 454321   11100000 111      113343 


Q ss_pred             ecCCCCEEEEEEEeCCeEEEEEEECCCCc-eEeecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCC
Q 008927          364 SHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDD  433 (548)
Q Consensus       364 ~~~d~~~l~~~~~~~g~~~L~~~dl~~g~-~~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~  433 (548)
                         .++.|++....+  ..|+++|+++++ ...+..+...+..+  +++++.|++....   ...|++++++.
T Consensus       235 ---~~G~l~v~~~~~--~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~---~~~l~~~~~~~  299 (314)
T 1pjx_A          235 ---EDNNLLVANWGS--SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE---NNAVWKFEWQR  299 (314)
T ss_dssp             ---TTCCEEEEEETT--TEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT---TTEEEEEECSS
T ss_pred             ---CCCCEEEEEcCC--CEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC---CCeEEEEeCCC
Confidence               234565543322  368889988564 34444443333333  4666666655432   35888988754

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.84  E-value=0.00011  Score=81.29  Aligned_cols=210  Identities=10%  Similarity=0.062  Sum_probs=116.2

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCC---CCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKA---GDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD  164 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~---~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~  164 (548)
                      ..+..+.+++ +++|||....   .++  |++++.++   +.....+....+.  .+    .|.++.+.++.|||++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~---~~~--I~~~~~~g~~~~~~~~~~i~~~~~--~P----~glavD~~~g~LY~tD~~~  474 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLS---QRM--ICSTQLDRAHGVSSYDTVISRDIQ--AP----DGLAVDWIHSNIYWTDSVL  474 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTT---TTS--BEEEESCCCCC-CCCCCBCCSCC----C----CCEECCCSSSBCEECCTTT
T ss_pred             cceEEEccccccCeEEEEecC---CCe--EEEEecCCCCCCcceEEEEeCCCC--Cc----ceEEEEeeCCcEEEEeccC
Confidence            4556778888 8899998632   233  55544432   0122222221111  11    1223334467899987777


Q ss_pred             CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee-cC
Q 008927          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GS  243 (548)
Q Consensus       165 ~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~-~~  243 (548)
                      ++|+++++++  ...+.|....   ...-.+++++|++.+|++. ...      ....|+++++++..   .+.|.. .-
T Consensus       475 ~~I~v~d~dg--~~~~~l~~~~---~~~P~giavDp~~g~ly~t-d~~------~~~~I~~~~~dG~~---~~~l~~~~l  539 (699)
T 1n7d_A          475 GTVSVADTKG--VKRKTLFREQ---GSKPRAIVVDPVHGFMYWT-DWG------TPAKIKKGGLNGVD---IYSLVTENI  539 (699)
T ss_dssp             SCEEEEBSSS--CCEEEECCCS---SCCCCCEECCSSSSCCEEC-CCS------SSCCEEBCCSSSCC---CCEESCSSC
T ss_pred             CeEEEEecCC--CceEEEEeCC---CCCcceEEEccCCCcEEEc-ccC------CCCeEEEEeCCCCC---eeEEEeCCC
Confidence            8999999987  5555554321   1233467789988776553 221      12579999998765   555432 22


Q ss_pred             CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCC
Q 008927          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG  323 (548)
Q Consensus       244 ~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g  323 (548)
                      .+-...+|+|++++|+|...       ....|+++++++ ..   ++.+.... ........+..  |++.+|++|.  +
T Consensus       540 ~~PnGlavd~~~~~LY~aD~-------~~~~I~~~d~dG-~~---~~~~~~~~-~~~~~P~glav--d~~~lywtd~--~  603 (699)
T 1n7d_A          540 QWPNGITLDLLSGRLYWVDS-------KLHSISSIDVNG-GN---RKTILEDE-KRLAHPFSLAV--FEDKVFWTDI--I  603 (699)
T ss_dssp             SSCCCEEECTTTCCEEEEET-------TTTEEEEECSSS-SC---CEEECCCS-SSCSSCCCCEE--ETTEEEEECS--T
T ss_pred             CCccEEEEeccCCEEEEEec-------CCCeEEEEccCC-Cc---eEEEEecC-CcCCCceEeEE--ECCEEEEEeC--C
Confidence            22345689999998987652       245799999873 22   23332211 00011222333  4453444544  2


Q ss_pred             eeeEEEEeccCCeeEee
Q 008927          324 FWNLHKWIESNNEVLAI  340 (548)
Q Consensus       324 ~~~Ly~~d~~~g~~~~l  340 (548)
                      ...|++++..+|+...+
T Consensus       604 ~~~V~~~d~~~G~~~~~  620 (699)
T 1n7d_A          604 NEAIFSANRLTGSDVNL  620 (699)
T ss_dssp             TTCEEEEETTTEEEEEC
T ss_pred             CCeEEEEEccCCCceEE
Confidence            34788998877765443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.83  E-value=0.001  Score=66.84  Aligned_cols=152  Identities=14%  Similarity=0.120  Sum_probs=90.2

Q ss_pred             CCEEEEE-eCCCCeEEEEeCCCCCCC-----------------ceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCC
Q 008927          154 GDTVIFS-NYKDQRLYKHSIDSKDSS-----------------PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD  215 (548)
Q Consensus       154 ~~~i~F~-~~~~~~Ly~~~~~~~~~~-----------------~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~  215 (548)
                      ...+++. ...++.|.+.++..  +.                 .+.+...    ...+....|+|||+.|+....+    
T Consensus       147 ~~~la~~sg~~~g~v~iwd~~~--~~~~~~~~~~~~~~~~~p~~~~~~~h----~~~v~~~~~s~~g~~l~s~s~d----  216 (355)
T 3vu4_A          147 NGLLVYSNEFNLGQIHITKLQS--SGSATTQDQGVQQKAILGKGVLIKAH----TNPIKMVRLNRKSDMVATCSQD----  216 (355)
T ss_dssp             TTEEEEEESSCTTCEEEEECCC--------------------CCEEECCC----SSCEEEEEECTTSSEEEEEETT----
T ss_pred             ccEEEEeCCCcCcEEEEEECCC--CCccccccccccccccCcccEEEEcc----CCceEEEEECCCCCEEEEEeCC----
Confidence            3678887 45678888888875  32                 2333332    2346678899999987765433    


Q ss_pred             CCCceeE-EEEEECCCCCccCcEEeee--cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEE
Q 008927          216 ALNSTTE-IVAIALNGQNIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV  292 (548)
Q Consensus       216 ~~~~~~~-l~~idl~~g~~~~~~~L~~--~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l  292 (548)
                           .. |.++|+.+++.  ...+..  ....+....|||||++|+-.+.        ...|.+.++..... .....+
T Consensus       217 -----~~~v~iwd~~~~~~--~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~--------d~~v~iw~~~~~~~-~~~~~~  280 (355)
T 3vu4_A          217 -----GTIIRVFKTEDGVL--VREFRRGLDRADVVDMKWSTDGSKLAVVSD--------KWTLHVFEIFNDQD-NKRHAL  280 (355)
T ss_dssp             -----CSEEEEEETTTCCE--EEEEECTTCCSCEEEEEECTTSCEEEEEET--------TCEEEEEESSCCSC-CCSEET
T ss_pred             -----CCEEEEEECCCCcE--EEEEEcCCCCCcEEEEEECCCCCEEEEEEC--------CCEEEEEEccCCCC-cccccc
Confidence                 34 78889998872  333442  3445677899999999885542        34678888864221 111111


Q ss_pred             cC-----C------------CCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEec
Q 008927          293 AG-----F------------DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE  332 (548)
Q Consensus       293 ~~-----~------------~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~  332 (548)
                      ..     .            ............|++||+.+++... +|.+.+|.+..
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~-dg~~~~~~~~~  336 (355)
T 3vu4_A          281 KGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPH-TRMIETFKVVF  336 (355)
T ss_dssp             TTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETT-TTEEEEEEEEE
T ss_pred             cceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeC-CCeEEEEEEEc
Confidence            00     0            0000011245789999995555554 67777776653

>2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579}

Probab=97.83  E-value=1.3e-05  Score=77.93  Aligned_cols=80  Identities=14%  Similarity=0.038  Sum_probs=56.2

Q ss_pred             CCccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccCh-HHHHHHhcC---cEEEEeC
Q 008927          456 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWTSRG---WAFVDVN  531 (548)
Q Consensus       456 ~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~-~~Q~~asrG---yaVl~~N  531 (548)
                      ..+...+.+++++..+|.++..++|.|.+  |++  +++||+|+++|||+.......+.. ..++.+++|   ++|+.+|
T Consensus        13 ~~~~~~~~~~~~s~~~g~~~~~~v~~P~~--~~~--~~~~Pvl~~lhG~~~~~~~~~~~~~~~~~~~~~g~~~~ivV~i~   88 (275)
T 2qm0_A           13 IITSNTEQWKMYSKLEGKEYQIHISKPKQ--PAP--DSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVG   88 (275)
T ss_dssp             CCCTTEEEEEEECTTTCCEEEEEEECCSS--CCC--TTCEEEEEEESHHHHHHHHHHHHHHHGGGHHHHCCCCCEEEEEE
T ss_pred             eecCCceEEEEEecCCCCEEEEEEECCCC--CCC--CCCccEEEEecChHHHHHHHHHHHHHhhcchhcCCCCeEEEEEC
Confidence            45667788999985368899999999965  543  578999999999986322111111 112234578   9999999


Q ss_pred             CCCCCCCC
Q 008927          532 YGGSTGLS  539 (548)
Q Consensus       532 yRGStGyG  539 (548)
                      |||+..|+
T Consensus        89 ~~~~~~~~   96 (275)
T 2qm0_A           89 YPIEGAFS   96 (275)
T ss_dssp             CSCSSSCC
T ss_pred             CCCCCcCc
Confidence            99975443

>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*

Probab=97.82  E-value=2.2e-05  Score=75.78  Aligned_cols=69  Identities=14%  Similarity=0.072  Sum_probs=50.5

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCC-CCCCCCCCCCcEEEEEccCccc-cccCccChHHHHHHhcCcEEEEeCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNP-IYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~-~~~~~~~~~~Pliv~iHGGP~~-~~~~~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      +.++++.  +|.++...+|.|.+. ++.  ..++.|+||++|||... .....|....+.|+++||.|+.+||||
T Consensus         5 ~~~~~~~--~~~~~~~~~~~p~~~~~~~--~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g   75 (277)
T 3bxp_A            5 EQRTLNT--AAHPFQITAYWLDQISDFE--TAVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQL   75 (277)
T ss_dssp             EEEEECS--TTCCEEEEEEEECCCCSSS--CCCCEEEEEEECCSTTTSCCCTTHHHHHHHHHHTTCEEEEEECCC
T ss_pred             EEEEecc--CCCcceEEEEeCCcccccc--cCCCccEEEEECCCccccCCCccchHHHHHHHHCCCEEEEEeccc
Confidence            4566654  688899999988621 121  24567999999998743 233345566788999999999999999

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.82  E-value=0.01  Score=57.96  Aligned_cols=234  Identities=11%  Similarity=0.013  Sum_probs=121.8

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCC---c-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSS---P-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~---~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~  224 (548)
                      +|+|+++.++++...|+.|.+-++...+..   + +.+...    ...+....|+|||+.|+....+         ..|.
T Consensus        45 ~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h----~~~V~~~~~s~dg~~l~s~~~d---------~~i~  111 (340)
T 4aow_A           45 ATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH----SHFVSDVVISSDGQFALSGSWD---------GTLR  111 (340)
T ss_dssp             EECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEE
T ss_pred             EEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC----CCCEEEEEECCCCCEEEEEccc---------ccce
Confidence            456665556666556664444444331011   1 122222    2245677899999987765433         3577


Q ss_pred             EEECCCCCccCcEEe-eecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCC
Q 008927          225 AIALNGQNIQEPKVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (548)
Q Consensus       225 ~idl~~g~~~~~~~L-~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~  303 (548)
                      .++...+.   .... ...........++++++.|+-...        ...+.+.++.. ..  ......... .  ..+
T Consensus       112 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~s~--------d~~~~~~d~~~-~~--~~~~~~~~~-~--~~v  174 (340)
T 4aow_A          112 LWDLTTGT---TTRRFVGHTKDVLSVAFSSDNRQIVSGSR--------DKTIKLWNTLG-VC--KYTVQDESH-S--EWV  174 (340)
T ss_dssp             EEETTTTE---EEEEEECCSSCEEEEEECTTSSCEEEEET--------TSCEEEECTTS-CE--EEEECSSSC-S--SCE
T ss_pred             EEeecccc---eeeeecCCCCceeEEEEeecCccceeecC--------CCeEEEEEeCC-Cc--eEEEEeccc-c--Ccc
Confidence            88887765   3332 223334556678999998875442        23466667653 21  111111111 1  345


Q ss_pred             cCceECcCCc-EEEE-EeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeE
Q 008927          304 TEPKWSSKGE-LFFV-TDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS  381 (548)
Q Consensus       304 ~~~~wspDG~-L~~~-sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~  381 (548)
                      ....|++++. .+++ ... ++  .|..+++.+++.......   ...+     .....+.|   +++.| ++...++. 
T Consensus       175 ~~~~~~~~~~~~~~~s~~~-d~--~i~i~d~~~~~~~~~~~~---h~~~-----v~~~~~s~---~~~~l-~s~s~Dg~-  238 (340)
T 4aow_A          175 SCVRFSPNSSNPIIVSCGW-DK--LVKVWNLANCKLKTNHIG---HTGY-----LNTVTVSP---DGSLC-ASGGKDGQ-  238 (340)
T ss_dssp             EEEEECSCSSSCEEEEEET-TS--CEEEEETTTTEEEEEECC---CSSC-----EEEEEECT---TSSEE-EEEETTCE-
T ss_pred             cceEEccCCCCcEEEEEcC-CC--EEEEEECCCCceeeEecC---CCCc-----EEEEEECC---CCCEE-EEEeCCCe-
Confidence            6678888876 4444 333 33  466677777765433221   0111     12244553   55544 45555554 


Q ss_pred             EEEEEECCCCceE-eecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          382 YLGILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       382 ~L~~~dl~~g~~~-~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                       |.++|+.+++.. .+... ..+..+  +++ +.++..+.    ...|.++|++++.
T Consensus       239 -i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~-~~~~~~~~----d~~i~iwd~~~~~  288 (340)
T 4aow_A          239 -AMLWDLNEGKHLYTLDGG-DIINALCFSPN-RYWLCAAT----GPSIKIWDLEGKI  288 (340)
T ss_dssp             -EEEEETTTTEEEEEEECS-SCEEEEEECSS-SSEEEEEE----TTEEEEEETTTTE
T ss_pred             -EEEEEeccCceeeeecCC-ceEEeeecCCC-CceeeccC----CCEEEEEECCCCe
Confidence             556687776543 33222 223333  343 34443333    2578888987664

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.82  E-value=0.0039  Score=61.89  Aligned_cols=189  Identities=11%  Similarity=0.002  Sum_probs=103.0

Q ss_pred             CCeEEEEeCCCCCCC-ceecCCCCCCCCceecceeeCC--CCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee
Q 008927          164 DQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDP--RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV  240 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~-~~~lT~~~~~~~~~~~~~~~Sp--DG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~  240 (548)
                      ++.+...++..  ++ .+.+....   ...+....|+|  +|+.++....+         ..|.++|+.+++   ...+.
T Consensus       103 ~~~~~~~~~~~--~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~s~d---------g~i~~wd~~~~~---~~~~~  165 (343)
T 3lrv_A          103 GNQITILDSKT--NKVLREIEVDS---ANEIIYMYGHNEVNTEYFIWADNR---------GTIGFQSYEDDS---QYIVH  165 (343)
T ss_dssp             TTEEEEEETTT--CCEEEEEECCC---SSCEEEEECCC---CCEEEEEETT---------CCEEEEESSSSC---EEEEE
T ss_pred             cCceEEeecCC--cceeEEeecCC---CCCEEEEEcCCCCCCCEEEEEeCC---------CcEEEEECCCCc---EEEEE
Confidence            34555666655  43 23333211   12356778999  99987765433         358888999887   54333


Q ss_pred             ec--CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcC-CCCCcccCCcCceECcCCcEEEE
Q 008927          241 SG--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-FDPTIVESPTEPKWSSKGELFFV  317 (548)
Q Consensus       241 ~~--~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~-~~~~~~~~~~~~~wspDG~L~~~  317 (548)
                      ..  ...+....|+|||+.|+-..        ....|.+.|+.. ++. ....+.. ..    ..+....|+|||++++.
T Consensus       166 ~~~~~~~i~~~~~~pdg~~lasg~--------~dg~i~iwd~~~-~~~-~~~~~~~~h~----~~v~~l~fs~~g~~l~s  231 (343)
T 3lrv_A          166 SAKSDVEYSSGVLHKDSLLLALYS--------PDGILDVYNLSS-PDQ-ASSRFPVDEE----AKIKEVKFADNGYWMVV  231 (343)
T ss_dssp             CCCSSCCCCEEEECTTSCEEEEEC--------TTSCEEEEESSC-TTS-CCEECCCCTT----SCEEEEEECTTSSEEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEc--------CCCEEEEEECCC-CCC-CccEEeccCC----CCEEEEEEeCCCCEEEE
Confidence            22  22356778999999887333        135689999985 431 1133443 22    56788999999995444


Q ss_pred             EeCCCCeeeEEEEeccCCeeE-eecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE
Q 008927          318 TDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS  394 (548)
Q Consensus       318 sd~~~g~~~Ly~~d~~~g~~~-~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~  394 (548)
                      ...  +  .|..+|+.+++.. .+.....    .....+...+.|.|   +++.|+.....++.-+||.++.....+.
T Consensus       232 ~~~--~--~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~g~~l~~~s~~d~~i~v~~~~~~~~~~~  298 (343)
T 3lrv_A          232 ECD--Q--TVVCFDLRKDVGTLAYPTYTI----PEFKTGTVTYDIDD---SGKNMIAYSNESNSLTIYKFDKKTKNWT  298 (343)
T ss_dssp             EES--S--BEEEEETTSSTTCBSSCCCBC---------CCEEEEECT---TSSEEEEEETTTTEEEEEEECTTTCSEE
T ss_pred             EeC--C--eEEEEEcCCCCcceeeccccc----ccccccceEEEECC---CCCEEEEecCCCCcEEEEEEcccccceE
Confidence            433  2  6888888766432 1211000    00001111255654   6665553332266666666654333333

>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A

Probab=97.81  E-value=2.3e-05  Score=77.12  Aligned_cols=69  Identities=16%  Similarity=0.237  Sum_probs=50.6

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccc-cccCccChHHHHHHhcCcEEEEeCCCCCCCCC
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSRGWAFVDVNYGGSTGLS  539 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~-~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG  539 (548)
                      .+.|.|. . ++.  ...+|.|.+      ..++.|+||++|||.+. .....+....+.|+++||+|+.+||||+.+..
T Consensus        58 ~~~i~y~-~-~~~--~~~~~~p~~------~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r~~~~~~  127 (303)
T 4e15_A           58 VDHLRYG-E-GRQ--LVDVFYSEK------TTNQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLCPQVT  127 (303)
T ss_dssp             EEEEECS-S-TTC--EEEEEECTT------CCTTCCEEEEECCSTTTSCCGGGSCTTHHHHHHTTCEEEEECCCCTTTSC
T ss_pred             eeeeccC-C-CCc--EEEEEecCC------CCCCCCEEEEECCCcCcCCChhHHHHHHHHHHhCCCEEEEecCCCCCCCC
Confidence            4456676 4 554  455666753      14578999999999753 33345667789999999999999999998764

>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*

Probab=97.80  E-value=3.1e-05  Score=73.69  Aligned_cols=65  Identities=23%  Similarity=0.201  Sum_probs=50.7

Q ss_pred             EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       464 i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      ++++.  ||.+++++++.|.+.      +++.|+||++||.+.......|....+.|+++||.|+.+|+||..
T Consensus         4 ~~~~~--~g~~l~~~~~~p~~~------~~~~p~vvl~HG~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G   68 (251)
T 2wtm_A            4 MYIDC--DGIKLNAYLDMPKNN------PEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHG   68 (251)
T ss_dssp             EEEEE--TTEEEEEEEECCTTC------CSSEEEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEEEECCTTST
T ss_pred             eEEec--CCcEEEEEEEccCCC------CCCCCEEEEEcCCCcccccccHHHHHHHHHHCCCEEEEecCCCCC
Confidence            55665  899999999998531      235699999999887633345666778999999999999999853

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.80  E-value=0.005  Score=59.17  Aligned_cols=198  Identities=10%  Similarity=0.076  Sum_probs=108.6

Q ss_pred             cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCc
Q 008927          194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA  273 (548)
Q Consensus       194 ~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~  273 (548)
                      ..+.++||| + +|++....     ..+.|.++|+++++.  .+.+.-+.. .....+.++|++|+.+.|       ...
T Consensus        24 ~Gl~~~~dg-~-Lyvstg~~-----~~s~v~~iD~~tg~v--~~~i~l~~~-~fgeGi~~~g~~lyv~t~-------~~~   86 (266)
T 2iwa_A           24 QGLVYAEND-T-LFESTGLY-----GRSSVRQVALQTGKV--ENIHKMDDS-YFGEGLTLLNEKLYQVVW-------LKN   86 (266)
T ss_dssp             EEEEECSTT-E-EEEEECST-----TTCEEEEEETTTCCE--EEEEECCTT-CCEEEEEEETTEEEEEET-------TCS
T ss_pred             ccEEEeCCC-e-EEEECCCC-----CCCEEEEEECCCCCE--EEEEecCCC-cceEEEEEeCCEEEEEEe-------cCC
Confidence            456789985 4 55544321     136899999999982  223322222 122235556888765553       356


Q ss_pred             eEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCccc
Q 008927          274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWV  353 (548)
Q Consensus       274 ~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~  353 (548)
                      .++++|.++ .++  ...+.-.. .  +   ....++||+.+|+++. +  ..|+.+|+++.++..-.+.... +.|.  
T Consensus        87 ~v~viD~~t-~~v--~~~i~~g~-~--~---g~glt~Dg~~l~vs~g-s--~~l~viD~~t~~v~~~I~Vg~~-~~p~--  151 (266)
T 2iwa_A           87 IGFIYDRRT-LSN--IKNFTHQM-K--D---GWGLATDGKILYGSDG-T--SILYEIDPHTFKLIKKHNVKYN-GHRV--  151 (266)
T ss_dssp             EEEEEETTT-TEE--EEEEECCS-S--S---CCEEEECSSSEEEECS-S--SEEEEECTTTCCEEEEEECEET-TEEC--
T ss_pred             EEEEEECCC-CcE--EEEEECCC-C--C---eEEEEECCCEEEEECC-C--CeEEEEECCCCcEEEEEEECCC-Cccc--
Confidence            899999874 442  22332211 0  1   2346779994446653 3  4899999988775432211000 0110  


Q ss_pred             ccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eecCCC-------------ceeEee--eecCCEEEEEE
Q 008927          354 FGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPF-------------TDIDNI--TLGNDCLFVEG  417 (548)
Q Consensus       354 ~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~~~~-------------~~~~~~--s~d~~~l~~~~  417 (548)
                      ...+.+.+.    + +.||...  .....|.++|++++++. .+..+.             ....++  ++++++++++.
T Consensus       152 ~~~nele~~----d-g~lyvn~--~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          152 IRLNELEYI----N-GEVWANI--WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             CCEEEEEEE----T-TEEEEEE--TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred             ccceeEEEE----C-CEEEEec--CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence            001123342    3 4666432  23457999999999864 443320             123444  56778877665


Q ss_pred             ecCCCCCeEEEEEcCC
Q 008927          418 ASGVEPSSVAKVTLDD  433 (548)
Q Consensus       418 ss~~~p~~l~~~d~~~  433 (548)
                      .   .-+.|+.+++..
T Consensus       225 k---~~~~v~~i~l~~  237 (266)
T 2iwa_A          225 K---LWPKLFEIKLHL  237 (266)
T ss_dssp             T---TCSEEEEEEEEE
T ss_pred             C---CCCeEEEEEEec
Confidence            3   346888888643

>3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0

Probab=97.79  E-value=2.5e-05  Score=75.58  Aligned_cols=69  Identities=12%  Similarity=0.006  Sum_probs=50.4

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccC-ccChHHHHHHhcCcEEEEeCCC
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNYG  533 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~-~~~~~~Q~~asrGyaVl~~NyR  533 (548)
                      .+.+++.+..+|.+++.++|.|.+  ++  +++++|+||++||++...... .+....++++++||+|+.||.+
T Consensus        15 ~~~~~~~s~~~g~~~~~~v~~P~~--~~--~~~~~P~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~   84 (280)
T 3ls2_A           15 HKQYTHSAVSTHCTMRFAVFLPPG--AS--ESNKVPVLYWLSGLTCTDENFMQKAGAFKKAAELGIAIVAPDTS   84 (280)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECTT--CB--TTBCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEECCSS
T ss_pred             EEEEEEechhcCCceEEEEEcCCC--CC--CCCCcCEEEEeCCCCCChhhhhcchhHHHHHhhCCeEEEEeCCc
Confidence            456677664378999999999965  43  267899999999997654321 1123457888899999999953

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.76  E-value=0.0072  Score=57.28  Aligned_cols=223  Identities=12%  Similarity=0.083  Sum_probs=112.5

Q ss_pred             EEEE-EeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCcc
Q 008927          156 TVIF-SNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ  234 (548)
Q Consensus       156 ~i~F-~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~  234 (548)
                      .|++ .+..++.|++++.++  ...+.+...   .......+.+++||+ |++. .. .       ..|+++|.+++.  
T Consensus        36 ~l~v~~~~~~~~i~~~~~~~--~~~~~~~~~---~~~~p~~i~~~~~g~-l~v~-~~-~-------~~i~~~d~~~~~--   98 (270)
T 1rwi_B           36 NVYVTSEGMYGRVVKLATGS--TGTTVLPFN---GLYQPQGLAVDGAGT-VYVT-DF-N-------NRVVTLAAGSNN--   98 (270)
T ss_dssp             CEEEEECSSSCEEEEECC-------EECCCC---SCCSCCCEEECTTCC-EEEE-ET-T-------TEEEEECTTCSC--
T ss_pred             CEEEEccCCCCcEEEecCCC--cccceEeeC---CcCCcceeEECCCCC-EEEE-cC-C-------CEEEEEeCCCce--
Confidence            5776 545567899998765  443433221   112345678999988 4333 32 1       379999998876  


Q ss_pred             CcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc
Q 008927          235 EPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (548)
Q Consensus       235 ~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~  313 (548)
                       ...+.. +........++|||+ | |+...      ....|++++... ..   ........ .  .......+++||+
T Consensus        99 -~~~~~~~~~~~p~~i~~~~~g~-l-~v~~~------~~~~i~~~~~~~-~~---~~~~~~~~-~--~~p~~i~~~~~g~  162 (270)
T 1rwi_B           99 -QTVLPFDGLNYPEGLAVDTQGA-V-YVADR------GNNRVVKLAAGS-KT---QTVLPFTG-L--NDPDGVAVDNSGN  162 (270)
T ss_dssp             -CEECCCCSCSSEEEEEECTTCC-E-EEEEG------GGTEEEEECTTC-CS---CEECCCCS-C--CSCCCEEECTTCC
T ss_pred             -EeeeecCCcCCCcceEECCCCC-E-EEEEC------CCCEEEEEECCC-ce---eEeecccc-C--CCceeEEEeCCCC
Confidence             544432 223345667899997 4 44422      134688775331 21   11111111 0  2456788999998


Q ss_pred             EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce
Q 008927          314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (548)
Q Consensus       314 L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~  393 (548)
                      ||+.... .  ..|++++.+++........  ....|      ..+.+.+   ++ .|++...  +...|++++.++...
T Consensus       163 l~v~~~~-~--~~i~~~~~~~~~~~~~~~~--~~~~p------~~i~~d~---~g-~l~v~~~--~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          163 VYVTDTD-N--NRVVKLEAESNNQVVLPFT--DITAP------WGIAVDE---AG-TVYVTEH--NTNQVVKLLAGSTTS  225 (270)
T ss_dssp             EEEEEGG-G--TEEEEECTTTCCEEECCCS--SCCSE------EEEEECT---TC-CEEEEET--TTSCEEEECTTCSCC
T ss_pred             EEEEECC-C--CEEEEEecCCCceEeeccc--CCCCc------eEEEECC---CC-CEEEEEC--CCCcEEEEcCCCCcc
Confidence            6555432 2  3688999876654433211  11111      1233431   33 5655432  234578888866554


Q ss_pred             EeecC-CCceeEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 008927          394 SLLDI-PFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLD  432 (548)
Q Consensus       394 ~~l~~-~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~  432 (548)
                      ..+.. .......+  ++++ .+|+....   ...|.++++.
T Consensus       226 ~~~~~~~~~~p~~i~~~~~g-~l~v~~~~---~~~v~~~~~~  263 (270)
T 1rwi_B          226 TVLPFTGLNTPLAVAVDSDR-TVYVADRG---NDRVVKLTSL  263 (270)
T ss_dssp             EECCCCSCSCEEEEEECTTC-CEEEEEGG---GTEEEEECCC
T ss_pred             eeeccCCCCCceeEEECCCC-CEEEEECC---CCEEEEEcCC
Confidence            43322 12223333  3333 34444322   2456666543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.76  E-value=0.00074  Score=75.30  Aligned_cols=157  Identities=10%  Similarity=0.109  Sum_probs=88.8

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCC--CCEEEEEEeccCCCCCCceeEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpD--G~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      .|+++++.|+.. ..++.|.+.++.++.+.. ..+...    ...+..+.|+|+  |+.|+....+         ..|.+
T Consensus        16 ~~s~dg~~latg-~~dg~I~vwd~~~~~~~~~~~l~~h----~~~V~~l~~s~~~~~~~l~s~s~D---------g~I~v   81 (753)
T 3jro_A           16 VLDYYGKRLATC-SSDKTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTILASCSYD---------GKVLI   81 (753)
T ss_dssp             CCCSSSCCEEEE-ETTTEEEEEEEETTEEEEEEEECCC----SSCEEEEEECCTTSCSEEEEEETT---------SCEEE
T ss_pred             EECCCCCeEEEE-ECCCcEEEEecCCCCCccceeccCC----cCceEEEEecCCCCCCEEEEEeCC---------CeEEE
Confidence            455566655544 356666666665310111 223222    234567789988  8887776443         25777


Q ss_pred             EECCCCCccCcEEeeecCCceeeeEECCC--CCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCC
Q 008927          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (548)
Q Consensus       226 idl~~g~~~~~~~L~~~~~~~~~p~~SPD--Gk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~  303 (548)
                      +|+.+++......+......+....|+|+  |+.|+....        ...|.+.++...... ....+.+..    ..+
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~--------dg~I~vwdl~~~~~~-~~~~~~~~~----~~v  148 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--------DGKVSVVEFKENGTT-SPIIIDAHA----IGV  148 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET--------TSEEEEEECCSSSCC-CCEEEECCS----SCE
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC--------CCcEEEEEeecCCCc-ceeEeecCC----Cce
Confidence            78877741002233333445677899999  888875541        357889998753221 223344433    457


Q ss_pred             cCceECc-------------CCcEEEEEeCCCCeeeEEEEeccCC
Q 008927          304 TEPKWSS-------------KGELFFVTDRKNGFWNLHKWIESNN  335 (548)
Q Consensus       304 ~~~~wsp-------------DG~L~~~sd~~~g~~~Ly~~d~~~g  335 (548)
                      ....|+|             ||+++++... +|.  |..+|+.++
T Consensus       149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~-dg~--I~iwd~~~~  190 (753)
T 3jro_A          149 NSASWAPATIEEDGEHNGTKESRKFVTGGA-DNL--VKIWKYNSD  190 (753)
T ss_dssp             EEEEECCCC---------CGGGCCEEEEET-TSC--EEEEEEETT
T ss_pred             EEEEecCcccccccccccCCCCCEEEEEEC-CCe--EEEEeccCC
Confidence            7888999             5775555444 454  444554444

>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*

Probab=97.76  E-value=3.2e-05  Score=73.93  Aligned_cols=68  Identities=15%  Similarity=0.106  Sum_probs=53.4

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG  537 (548)
                      ..+.+.++.  ||.+++++++.|.+        ++.|+||++||++.......|....+.|+.+||.|+.+|+||-..
T Consensus        21 ~~~~~~~~~--~g~~l~~~~~~p~~--------~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~   88 (270)
T 3pfb_A           21 GMATITLER--DGLQLVGTREEPFG--------EIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGD   88 (270)
T ss_dssp             EEEEEEEEE--TTEEEEEEEEECSS--------SSEEEEEEECCTTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTT
T ss_pred             cceEEEecc--CCEEEEEEEEcCCC--------CCCCEEEEEcCCCCCccccHHHHHHHHHHhCCcEEEEEccccccC
Confidence            345666665  89999999999853        346999999999876544446677788999999999999998543

>2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A

Probab=97.75  E-value=2.6e-05  Score=77.98  Aligned_cols=73  Identities=16%  Similarity=0.187  Sum_probs=50.9

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccC---ccChHHHHHH-hcCcEEEEeCCCCCC
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG---ILNLSIQYWT-SRGWAFVDVNYGGST  536 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~---~~~~~~Q~~a-srGyaVl~~NyRGSt  536 (548)
                      .+.+.+.+. ++  +...+|.|++.. .  ++++.|+||++|||.......   .|....+.|+ ++||.|+.+||||+.
T Consensus        55 ~~~v~~~~~-~~--~~~~~~~P~~~~-~--~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~~~la~~~g~~vv~~d~rg~~  128 (338)
T 2o7r_A           55 TKDLALNPL-HN--TFVRLFLPRHAL-Y--NSAKLPLVVYFHGGGFILFSAASTIFHDFCCEMAVHAGVVIASVDYRLAP  128 (338)
T ss_dssp             EEEEEEETT-TT--EEEEEEEEGGGG-G--SSCCEEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTCEEEEEECCCTT
T ss_pred             EEEEEecCC-CC--eEEEEEeCCCCC-c--CCCCceEEEEEcCCcCcCCCCCchhHHHHHHHHHHHCCcEEEEecCCCCC
Confidence            456667653 44  677788886420 1  246789999999998543322   2556677888 799999999999987


Q ss_pred             CCC
Q 008927          537 GLS  539 (548)
Q Consensus       537 GyG  539 (548)
                      .+.
T Consensus       129 ~~~  131 (338)
T 2o7r_A          129 EHR  131 (338)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            643

>4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58}

Probab=97.75  E-value=3.9e-05  Score=74.39  Aligned_cols=70  Identities=13%  Similarity=0.028  Sum_probs=50.8

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCc-cChHHHHHHhcCcEEEEeC--CCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVN--YGGST  536 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~-~~~~~Q~~asrGyaVl~~N--yRGSt  536 (548)
                      +.+++.+..+|.++...+|.|.+  ++   ++++|+||++||++....... .....++++.+||+|+.||  +||.+
T Consensus        23 ~~~~~~s~~~~~~~~~~v~~P~~--~~---~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~rg~~   95 (283)
T 4b6g_A           23 QVWAHHAQTLQCEMKFAVYLPNN--PE---NRPLGVIYWLSGLTCTEQNFITKSGFQRYAAEHQVIVVAPDTSPRGEQ   95 (283)
T ss_dssp             EEEEEEETTTTEEEEEEEEECCC--TT---CCCEEEEEEECCTTCCSHHHHHHSCTHHHHHHHTCEEEEECSSCCSTT
T ss_pred             EEEEEechhhCCceEEEEEeCCC--CC---CCCCCEEEEEcCCCCCccchhhcccHHHHHhhCCeEEEEecccccccc
Confidence            44556554378999999999965  32   468999999999976543221 1234578889999999999  56764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.75  E-value=0.016  Score=55.86  Aligned_cols=233  Identities=8%  Similarity=0.002  Sum_probs=118.4

Q ss_pred             CEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc
Q 008927          155 DTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (548)
Q Consensus       155 ~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~  233 (548)
                      +.+++....++.|++++.+.  |+. .++....   .....+..++|||+.|+  +.+         ..|+.+|. +|+.
T Consensus         5 ~~~lv~~~~~~~v~~~d~~t--G~~~w~~~~~~---~~~~~~~~~~pdG~ilv--s~~---------~~V~~~d~-~G~~   67 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDT--KEIVWEYPLEK---GWECNSVAATKAGEILF--SYS---------KGAKMITR-DGRE   67 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTT--TEEEEEEECCT---TCCCCEEEECTTSCEEE--ECB---------SEEEEECT-TSCE
T ss_pred             CcEEEeeCCCCEEEEEECCC--CeEEEEeCCCc---cCCCcCeEECCCCCEEE--eCC---------CCEEEECC-CCCE
Confidence            46777776778899998854  333 3333321   11345667999998655  222         36899999 5551


Q ss_pred             cCcEEeeecC-CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCC
Q 008927          234 QEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (548)
Q Consensus       234 ~~~~~L~~~~-~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG  312 (548)
                        ...+..+. .......++|||+.|+ ....      ....++.++.  +|++.....+.................+||
T Consensus        68 --~W~~~~~~~~~~~~~~~~~dG~~lv-~~~~------~~~~v~~vd~--~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G  136 (276)
T 3no2_A           68 --LWNIAAPAGCEMQTARILPDGNALV-AWCG------HPSTILEVNM--KGEVLSKTEFETGIERPHAQFRQINKNKKG  136 (276)
T ss_dssp             --EEEEECCTTCEEEEEEECTTSCEEE-EEES------TTEEEEEECT--TSCEEEEEEECCSCSSGGGSCSCCEECTTS
T ss_pred             --EEEEcCCCCccccccEECCCCCEEE-EecC------CCCEEEEEeC--CCCEEEEEeccCCCCcccccccCceECCCC
Confidence              33343322 2345667899999765 3321      1346776664  454211112221100000122344678899


Q ss_pred             cEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCc
Q 008927          313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS  392 (548)
Q Consensus       313 ~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~  392 (548)
                      ++++.... .  ..|+.+|++ |+...-....      .+..+   ...++   +++.| +....+  ..|+.+|+++|+
T Consensus       137 ~~lv~~~~-~--~~v~~~d~~-G~~~w~~~~~------~~~~~---~~~~~---~g~~~-v~~~~~--~~v~~~d~~tG~  197 (276)
T 3no2_A          137 NYLVPLFA-T--SEVREIAPN-GQLLNSVKLS------GTPFS---SAFLD---NGDCL-VACGDA--HCFVQLNLESNR  197 (276)
T ss_dssp             CEEEEETT-T--TEEEEECTT-SCEEEEEECS------SCCCE---EEECT---TSCEE-EECBTT--SEEEEECTTTCC
T ss_pred             CEEEEecC-C--CEEEEECCC-CCEEEEEECC------CCccc---eeEcC---CCCEE-EEeCCC--CeEEEEeCcCCc
Confidence            85554322 3  368899987 6643222111      11111   12221   44444 333222  358999999786


Q ss_pred             eE-eecC---C---CceeEee-eecCCEEEEEEecCC-------CCCeEEEEEcCCCc
Q 008927          393 LS-LLDI---P---FTDIDNI-TLGNDCLFVEGASGV-------EPSSVAKVTLDDHK  435 (548)
Q Consensus       393 ~~-~l~~---~---~~~~~~~-s~d~~~l~~~~ss~~-------~p~~l~~~d~~~~~  435 (548)
                      +. ++..   +   .....++ ...++.+++......       ....++.++. +|+
T Consensus       198 ~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~-~g~  254 (276)
T 3no2_A          198 IVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS-EGK  254 (276)
T ss_dssp             EEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT-TSB
T ss_pred             EEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECC-CCC
Confidence            53 4431   1   1123333 233455555543221       2456777775 454

>3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp}

Probab=97.74  E-value=9.6e-05  Score=70.13  Aligned_cols=69  Identities=16%  Similarity=0.107  Sum_probs=51.6

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccc-ccCccC-hHHHHHHhcCcEEEEeCCCCCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILN-LSIQYWTSRGWAFVDVNYGGSTGLS  539 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~-~~~~~~-~~~Q~~asrGyaVl~~NyRGStGyG  539 (548)
                      +..++.+. ||.++++.+|.|.+       +++.|+||++|||+... ....|. ...++++.+ |.|+.+|+||+....
T Consensus         4 ~~~~~~~~-dg~~l~~~~~~p~~-------~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~l~~~-~~v~~~d~~~~~~~~   74 (275)
T 3h04_A            4 IKYKVITK-DAFALPYTIIKAKN-------QPTKGVIVYIHGGGLMFGKANDLSPQYIDILTEH-YDLIQLSYRLLPEVS   74 (275)
T ss_dssp             EEEEEECT-TSCEEEEEEECCSS-------SSCSEEEEEECCSTTTSCCTTCSCHHHHHHHTTT-EEEEEECCCCTTTSC
T ss_pred             eEEEEecC-CcEEEEEEEEccCC-------CCCCCEEEEEECCcccCCchhhhHHHHHHHHHhC-ceEEeeccccCCccc
Confidence            45677887 99999999999953       34579999999998422 223344 556677777 999999999886543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.73  E-value=0.0063  Score=62.29  Aligned_cols=237  Identities=8%  Similarity=-0.033  Sum_probs=129.0

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      +|+++|..|+-. ..++.|.+.++..  ++. +.+...    ..+...  ++++++.|+....+         ..++.+|
T Consensus       154 ~fspdg~~lasg-s~Dg~v~iWd~~~--~~~~~~~~~h----~~~v~~--~s~~~~~l~sgs~d---------~~i~~~d  215 (420)
T 4gga_A          154 AWIKEGNYLAVG-TSSAEVQLWDVQQ--QKRLRNMTSH----SARVGS--LSWNSYILSSGSRS---------GHIHHHD  215 (420)
T ss_dssp             EECTTSSEEEEE-ETTSCEEEEETTT--TEEEEEECCC----SSCEEE--EEEETTEEEEEETT---------SEEEEEE
T ss_pred             EECCCCCEEEEE-ECCCeEEEEEcCC--CcEEEEEeCC----CCceEE--EeeCCCEEEEEeCC---------CceeEee
Confidence            677777766554 3567777778875  433 333332    223333  44566765554322         3677788


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCce-eeeEEEcCCCCCcccCCcCc
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVESPTEP  306 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~-~~~~~l~~~~~~~~~~~~~~  306 (548)
                      ...... ....+...........|+|+|+.|+-...        ...+.+.+...+... ..........    ..+...
T Consensus       216 ~~~~~~-~~~~~~~h~~~~~~~~~~~~g~~l~s~~~--------D~~v~i~~~~~~~~~~~~~~~~~~~~----~~V~~~  282 (420)
T 4gga_A          216 VRVAEH-HVATLSGHSQEVCGLRWAPDGRHLASGGN--------DNLVNVWPSAPGEGGWVPLQTFTQHQ----GAVKAV  282 (420)
T ss_dssp             TTSSSC-EEEEEECCSSCEEEEEECTTSSEEEEEET--------TSCEEEEESSCCSSCSCCSEEECCCS----SCEEEE
T ss_pred             ecccce-eeEEecccccceeeeeecCCCCeeeeeec--------cccceEEeeccccccceeeeeecccC----Cceeee
Confidence            776541 02233333445667789999998875442        245777787642211 1122223222    456778


Q ss_pred             eECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927          307 KWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (548)
Q Consensus       307 ~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~  385 (548)
                      .|+|++. ++++..- ..-..|..+|+.+++..........         .....+.+   +++.|+.... .....|++
T Consensus       283 ~~~p~~~~~la~~~g-s~D~~I~iwd~~t~~~~~~~~~~~~---------v~~~~~~~---~~~~lv~~sg-~~d~~I~i  348 (420)
T 4gga_A          283 AWCPWQSNVLATGGG-TSDRHIRIWNVCSGACLSAVDAHSQ---------VCSILWSP---HYKELISGHG-FAQNQLVI  348 (420)
T ss_dssp             EECTTCTTEEEEEEC-TTTCEEEEEETTTTEEEEEEECSSC---------EEEEEEET---TTTEEEEEEC-TTTCCEEE
T ss_pred             eeCCCcccEEEEEee-cCCCEEEEEeCCccccceeeccccc---------eeeeeecC---CCCeEEEEEe-cCCCEEEE
Confidence            9999987 7666432 2223577788888875443321111         11233443   6677765432 12345777


Q ss_pred             EECCCCce-EeecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCC
Q 008927          386 LDDFGHSL-SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDH  434 (548)
Q Consensus       386 ~dl~~g~~-~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~  434 (548)
                      +|+.+++. ..|......+..+  ++|+..|+ .++..   ..|.++|+...
T Consensus       349 wd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~-S~s~D---~tvriWdv~~~  396 (420)
T 4gga_A          349 WKYPTMAKVAELKGHTSRVLSLTMSPDGATVA-SAAAD---ETLRLWRCFEL  396 (420)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECTTSSCEE-EEETT---TEEEEECCSCS
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE-EEecC---CeEEEEECCCC
Confidence            88887764 3454333345544  67777554 44332   45666776443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.72  E-value=0.0037  Score=60.72  Aligned_cols=204  Identities=9%  Similarity=0.001  Sum_probs=104.6

Q ss_pred             CEEEEEeCCCCeEEEEeCCCCCCCceec-CCCCCC-CCceecceeeCCCCCEEEEEEeccC-------CCCCCceeEEEE
Q 008927          155 DTVIFSNYKDQRLYKHSIDSKDSSPLPI-TPDYGE-PLVSYADGIFDPRFNRYVTVREDRR-------QDALNSTTEIVA  225 (548)
Q Consensus       155 ~~i~F~~~~~~~Ly~~~~~~~~~~~~~l-T~~~~~-~~~~~~~~~~SpDG~~i~~v~~~~~-------~~~~~~~~~l~~  225 (548)
                      +.|++... ...|++++.++   +.+.+ ...... ......++.++|||+. ++......       .........|++
T Consensus        83 g~l~v~~~-~~~l~~~d~~g---~~~~~~~~~~~~~~~~~~~~i~~d~~g~l-~v~~~~~~~~~~~~~~~~~~~~~~l~~  157 (314)
T 1pjx_A           83 NQLFVADM-RLGLLVVQTDG---TFEEIAKKDSEGRRMQGCNDCAFDYEGNL-WITAPAGEVAPADYTRSMQEKFGSIYC  157 (314)
T ss_dssp             SEEEEEET-TTEEEEEETTS---CEEECCSBCTTSCBCBCCCEEEECTTSCE-EEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred             CcEEEEEC-CCCEEEEeCCC---CEEEEEeccCCCccccCCcCEEECCCCCE-EEEecCcccccccccccccCCCCeEEE
Confidence            56766653 33799999873   44444 321100 1123456789999974 33322110       000112368999


Q ss_pred             EECCCCCccCcEEeeecCCceeeeEEC----CCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCccc
Q 008927          226 IALNGQNIQEPKVLVSGSDFYAFPRMD----PRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE  301 (548)
Q Consensus       226 idl~~g~~~~~~~L~~~~~~~~~p~~S----PDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~  301 (548)
                      +|.+ ++   .+.+...........|+    |||+.|++.. .      ....|++++++.+|.+.....+.........
T Consensus       158 ~~~~-g~---~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~-~------~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~  226 (314)
T 1pjx_A          158 FTTD-GQ---MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAE-T------PTKKLWSYDIKGPAKIENKKVWGHIPGTHEG  226 (314)
T ss_dssp             ECTT-SC---EEEEEEEESSEEEEEEEECTTSCEEEEEEEE-T------TTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred             ECCC-CC---EEEeccCCCCcceEEEecccCCCCCEEEEEE-C------CCCeEEEEECCCCCccccceEEEECCCCCCC
Confidence            9987 65   55554332333456789    9998775443 1      1357999987633543222222211100001


Q ss_pred             CCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeE
Q 008927          302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS  381 (548)
Q Consensus       302 ~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~  381 (548)
                      ......+++||+||+.... .+  .|+++++++++........     ..+.   ....+.+   +++.|++....  ..
T Consensus       227 ~p~~i~~d~~G~l~v~~~~-~~--~i~~~d~~~g~~~~~~~~~-----~~~~---~~i~~~~---dg~~l~v~~~~--~~  290 (314)
T 1pjx_A          227 GADGMDFDEDNNLLVANWG-SS--HIEVFGPDGGQPKMRIRCP-----FEKP---SNLHFKP---QTKTIFVTEHE--NN  290 (314)
T ss_dssp             EEEEEEEBTTCCEEEEEET-TT--EEEEECTTCBSCSEEEECS-----SSCE---EEEEECT---TSSEEEEEETT--TT
T ss_pred             CCCceEECCCCCEEEEEcC-CC--EEEEEcCCCCcEeEEEeCC-----CCCc---eeEEECC---CCCEEEEEeCC--CC
Confidence            1345678999987766433 22  6888998756542221110     0111   1233432   56657655422  23


Q ss_pred             EEEEEECCC
Q 008927          382 YLGILDDFG  390 (548)
Q Consensus       382 ~L~~~dl~~  390 (548)
                      .|++++++.
T Consensus       291 ~l~~~~~~~  299 (314)
T 1pjx_A          291 AVWKFEWQR  299 (314)
T ss_dssp             EEEEEECSS
T ss_pred             eEEEEeCCC
Confidence            577787754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.71  E-value=0.013  Score=56.84  Aligned_cols=205  Identities=12%  Similarity=0.032  Sum_probs=103.9

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceec---CCCCCCCCceecceeeCC--CCCEEEEEEeccCCCCCCceeEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPI---TPDYGEPLVSYADGIFDP--RFNRYVTVREDRRQDALNSTTEI  223 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~l---T~~~~~~~~~~~~~~~Sp--DG~~i~~v~~~~~~~~~~~~~~l  223 (548)
                      .|++++..|+-. ..++.|.+.++..+....+.+   ...    ...+..+.|+|  |++.|+....+         ..|
T Consensus        18 ~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~d~~~l~s~~~d---------g~v   83 (351)
T 3f3f_A           18 VYDFYGRHVATC-SSDQHIKVFKLDKDTSNWELSDSWRAH----DSSIVAIDWASPEYGRIIASASYD---------KTV   83 (351)
T ss_dssp             EECSSSSEEEEE-ETTSEEEEEEECSSSCCEEEEEEEECC----SSCEEEEEECCGGGCSEEEEEETT---------SCE
T ss_pred             EEcCCCCEEEEe-eCCCeEEEEECCCCCCcceecceeccC----CCcEEEEEEcCCCCCCEEEEEcCC---------CeE
Confidence            466666655544 456766666665421221222   222    23466778999  68887765443         247


Q ss_pred             EEEECCCCCcc-------CcEEeeecCCceeeeEECCC--CCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEE---
Q 008927          224 VAIALNGQNIQ-------EPKVLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC---  291 (548)
Q Consensus       224 ~~idl~~g~~~-------~~~~L~~~~~~~~~p~~SPD--Gk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~---  291 (548)
                      .++|+.+++..       ....+......+....|+|+  |+.|+....        ...|.+.|+.....+.....   
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--------dg~v~iwd~~~~~~~~~~~~~~~  155 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN--------DGILRLYDALEPSDLRSWTLTSE  155 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET--------TCEEEEEECSSTTCTTCCEEEEE
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC--------CCcEEEecCCChHHhcccccccc
Confidence            77777776310       01222233445677889999  998875541        35788889874322111110   


Q ss_pred             E---cCCCCCcccCCcCceECcC---CcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeec
Q 008927          292 V---AGFDPTIVESPTEPKWSSK---GELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSH  365 (548)
Q Consensus       292 l---~~~~~~~~~~~~~~~wspD---G~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~  365 (548)
                      .   .-........+....|+|+   ++++++... ++.  +...+...++...+.....   ....   .....|.|  
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~--~~~~~~~~~~~~~~~~~~~---h~~~---i~~~~~~p--  224 (351)
T 3f3f_A          156 MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL-EQA--IIYQRGKDGKLHVAAKLPG---HKSL---IRSISWAP--  224 (351)
T ss_dssp             EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET-TEE--EEEEECTTSCEEEEEECCC---CCSC---EEEEEECC--
T ss_pred             ccccccccCCcccceeEEEeccCCCCCcEEEEecC-CCc--EEEEccCCCceeeeeecCC---CCcc---eeEEEECC--
Confidence            0   0000000034667899997   665555544 332  3333344555433321111   1111   12244553  


Q ss_pred             CCCC---EEEEEEEeCCeEEEEEEE
Q 008927          366 GEKN---LIACSYRQNGRSYLGILD  387 (548)
Q Consensus       366 ~d~~---~l~~~~~~~g~~~L~~~d  387 (548)
                       ++.   .++++...++.-.+|-+.
T Consensus       225 -~~~~~~~~l~s~~~dg~i~iwd~~  248 (351)
T 3f3f_A          225 -SIGRWYQLIATGCKDGRIRIFKIT  248 (351)
T ss_dssp             -CSSCSSEEEEEEETTSCEEEEEEE
T ss_pred             -CCCCcceEEEEEcCCCeEEEEeCC
Confidence             431   566666667766665444

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.69  E-value=0.01  Score=58.42  Aligned_cols=236  Identities=12%  Similarity=0.076  Sum_probs=120.2

Q ss_pred             CEEEEEeCCCCeEEEEeCCCCCCCceecCCCCC--C--------------CCceecceeeCCCCCEEEEEEeccCCCCCC
Q 008927          155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG--E--------------PLVSYADGIFDPRFNRYVTVREDRRQDALN  218 (548)
Q Consensus       155 ~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~--~--------------~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~  218 (548)
                      +.++|+...+++|++++.++  +..+.+.....  .              ...+...+.++++...|++ ....      
T Consensus        30 g~~l~v~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v-~d~~------  100 (322)
T 2fp8_A           30 NKGFYTSVQDGRVIKYEGPN--SGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI-VDCY------  100 (322)
T ss_dssp             CSSEEEECTTSEEEEECCTT--TCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE-EETT------
T ss_pred             CCEEEEEcCCCeEEEECCCC--CceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE-EECC------
Confidence            35677776778999998876  44443321000  0              0012234567873344443 3321      


Q ss_pred             ceeEEEEEECCCCCccCcEEeeec-C----CceeeeEECC-CCCEEEEEEecCCCCC-----------CCCceEEEEEec
Q 008927          219 STTEIVAIALNGQNIQEPKVLVSG-S----DFYAFPRMDP-RGERMAWIEWHHPNMP-----------WDKAELWVGYIS  281 (548)
Q Consensus       219 ~~~~l~~idl~~g~~~~~~~L~~~-~----~~~~~p~~SP-DGk~La~~~~~~~~~p-----------~~~~~L~v~~~~  281 (548)
                        ..|+++|.+++.   .+.+... .    .+.....++| ||+ | |+........           -....|+.++.+
T Consensus       101 --~~i~~~d~~~g~---~~~~~~~~~~~~~~~p~~i~~d~~~G~-l-~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A          101 --YHLSVVGSEGGH---ATQLATSVDGVPFKWLYAVTVDQRTGI-V-YFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             --TEEEEECTTCEE---CEEEESEETTEECSCEEEEEECTTTCC-E-EEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             --CCEEEEeCCCCE---EEEecccCCCCcccccceEEEecCCCE-E-EEECCcccccccccceehcccCCCceEEEEeCC
Confidence              248999988776   5555321 1    1234567899 886 4 4442110000           013578888876


Q ss_pred             CCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCC---eeEeecccccccCCCcccccCcc
Q 008927          282 ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN---EVLAIYSLDAEFSRPLWVFGINS  358 (548)
Q Consensus       282 ~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g---~~~~l~~~~~d~~~p~w~~~~~~  358 (548)
                       ++++   ..+....    .....+.|+|||+.+|++|.  +...|++++++++   +.+.+..    ...|.      .
T Consensus       174 -~~~~---~~~~~~~----~~p~gia~~~dg~~lyv~d~--~~~~I~~~~~~~~~~~~~~~~~~----~~gP~------g  233 (322)
T 2fp8_A          174 -TKET---TLLLKEL----HVPGGAEVSADSSFVLVAEF--LSHQIVKYWLEGPKKGTAEVLVK----IPNPG------N  233 (322)
T ss_dssp             -TTEE---EEEEEEE----SCCCEEEECTTSSEEEEEEG--GGTEEEEEESSSTTTTCEEEEEE----CSSEE------E
T ss_pred             -CCEE---EEeccCC----ccCcceEECCCCCEEEEEeC--CCCeEEEEECCCCcCCccceEEe----CCCCC------C
Confidence             3432   2221111    22345789999995556554  2346888888653   2222221    00121      1


Q ss_pred             eeeeeecCCCCEEEEEEEe--------CCeEEEEEEECCCCceEeecCCC----ceeEeeeecCCEEEEEEecCCCCCeE
Q 008927          359 YEIIQSHGEKNLIACSYRQ--------NGRSYLGILDDFGHSLSLLDIPF----TDIDNITLGNDCLFVEGASGVEPSSV  426 (548)
Q Consensus       359 ~~~~~~~~d~~~l~~~~~~--------~g~~~L~~~dl~~g~~~~l~~~~----~~~~~~s~d~~~l~~~~ss~~~p~~l  426 (548)
                      +...   +++ .|++....        .....|+++|.++..++.+..+.    .....+..++++||+...   ....|
T Consensus       234 i~~d---~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~---~~~~i  306 (322)
T 2fp8_A          234 IKRN---ADG-HFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTL---FHGSV  306 (322)
T ss_dssp             EEEC---TTS-CEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECS---SCSEE
T ss_pred             eEEC---CCC-CEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeec---CCCce
Confidence            3332   144 46555433        22467899998644455555432    223333345677776543   23577


Q ss_pred             EEEEcCC
Q 008927          427 AKVTLDD  433 (548)
Q Consensus       427 ~~~d~~~  433 (548)
                      .+++++.
T Consensus       307 ~~~~~~~  313 (322)
T 2fp8_A          307 GILVYDK  313 (322)
T ss_dssp             EEEEC--
T ss_pred             EEEeccc
Confidence            7887653

>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens}

Probab=97.69  E-value=3.9e-05  Score=79.53  Aligned_cols=57  Identities=16%  Similarity=0.237  Sum_probs=46.0

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCChh
Q 008927          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSV  541 (548)
Q Consensus       474 ~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~~  541 (548)
                      .+++++|.|.+       .++.|+||++||++..    .+....+.|+++||.|+.+||||..+....
T Consensus       144 ~l~~~l~~P~~-------~~~~P~Vv~~hG~~~~----~~~~~a~~La~~Gy~V~a~D~rG~g~~~~~  200 (422)
T 3k2i_A          144 RVRATLFLPPG-------PGPFPGIIDIFGIGGG----LLEYRASLLAGHGFATLALAYYNFEDLPNN  200 (422)
T ss_dssp             TEEEEEEECSS-------SCCBCEEEEECCTTCS----CCCHHHHHHHTTTCEEEEEECSSSTTSCSS
T ss_pred             cEEEEEEcCCC-------CCCcCEEEEEcCCCcc----hhHHHHHHHHhCCCEEEEEccCCCCCCCCC
Confidence            58999999964       2467999999999754    244568999999999999999998765543

>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens}

Probab=97.66  E-value=4.3e-05  Score=79.84  Aligned_cols=57  Identities=16%  Similarity=0.290  Sum_probs=46.0

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCChh
Q 008927          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSV  541 (548)
Q Consensus       474 ~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~~  541 (548)
                      .+++++|.|.+       .++.|+||++||+...    .+....+.|+++||+|+.+||||..+.+..
T Consensus       160 ~l~~~l~~P~~-------~~~~P~Vv~lhG~~~~----~~~~~a~~La~~Gy~Vla~D~rG~~~~~~~  216 (446)
T 3hlk_A          160 RVRGTLFLPPE-------PGPFPGIVDMFGTGGG----LLEYRASLLAGKGFAVMALAYYNYEDLPKT  216 (446)
T ss_dssp             TEEEEEEECSS-------SCCBCEEEEECCSSCS----CCCHHHHHHHTTTCEEEEECCSSSTTSCSC
T ss_pred             eEEEEEEeCCC-------CCCCCEEEEECCCCcc----hhhHHHHHHHhCCCEEEEeccCCCCCCCcc
Confidence            59999999954       2467999999999754    234558999999999999999998776544

>2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A*

Probab=97.66  E-value=7.9e-05  Score=75.00  Aligned_cols=75  Identities=15%  Similarity=0.147  Sum_probs=50.9

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCC----------CCCCCCCCcEEEEEccCccccccC---ccChHHHHHH-hcCcEE
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIY----------QASPEEKPPLLVKSHGGPTSEARG---ILNLSIQYWT-SRGWAF  527 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~----------~~~~~~~~Pliv~iHGGP~~~~~~---~~~~~~Q~~a-srGyaV  527 (548)
                      +.+.+.+. +  .+...+|.|++...          .+..+++.|+||++|||.......   .|....+.|+ ++||+|
T Consensus        73 ~dv~~~~~-~--~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~~~la~~~g~~v  149 (351)
T 2zsh_A           73 FDVLIDRR-I--NLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVV  149 (351)
T ss_dssp             EEEEEETT-T--TEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTSEE
T ss_pred             EEEEecCC-C--CeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCCcchhHHHHHHHHHHHcCCEE
Confidence            44555543 3  47888888865210          000135789999999998643222   2556678888 789999


Q ss_pred             EEeCCCCCCCCC
Q 008927          528 VDVNYGGSTGLS  539 (548)
Q Consensus       528 l~~NyRGStGyG  539 (548)
                      +.+||||+..+.
T Consensus       150 v~~d~rg~~~~~  161 (351)
T 2zsh_A          150 VSVNYRRAPENP  161 (351)
T ss_dssp             EEECCCCTTTSC
T ss_pred             EEecCCCCCCCC
Confidence            999999987754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.65  E-value=0.01  Score=64.32  Aligned_cols=234  Identities=13%  Similarity=0.071  Sum_probs=125.6

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccC
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~  235 (548)
                      .|+|.+  ...|.++++++...+...+....    .....+.++++++.|++. +..       ...|+++++++... .
T Consensus        11 ~~~~~~--~~~I~~i~~~~~~~~~~~~~~~~----~~~~~ld~~~~~~~ly~s-D~~-------~~~I~r~~~~g~~~-~   75 (619)
T 3s94_A           11 LLLYAN--RRDLRLVDATNGKENATIVVGGL----EDAAAVDFVFSHGLIYWS-DVS-------EEAIKRTEFNKTES-V   75 (619)
T ss_dssp             CEEEEC--SSBEEEECCC---------CBCC----SCEEEEEEETTTTEEEEE-ETT-------TTEEEEEEC------C
T ss_pred             eEEEec--cccEEEEeCCCCcceEEEEEcCC----CceEEEEEEeCCCEEEEE-ECC-------CCeEEEEEccCCCc-e
Confidence            477776  56799999986200223232221    123456789888887664 332       24799999987630 0


Q ss_pred             cEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEE
Q 008927          236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF  315 (548)
Q Consensus       236 ~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~  315 (548)
                      ...+..+-..-...++++.++.|+|...       ....|.+++++  |.. ...++...-    .....++..|.+..+
T Consensus        76 ~~v~~~~~~~P~GlAvD~~~~~ly~~d~-------~~~~I~v~~~d--G~~-~~~l~~~~l----~~P~~Iavdp~~g~l  141 (619)
T 3s94_A           76 QNVVVSGLLSPDGLACDWLGEKLYWTDS-------ETNRIEVSNLD--GSL-RKVLFWQEL----DQPRAIALDPSSGFM  141 (619)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEET-------TTTEEEEEETT--SCS-CEEEECSSC----SCCCCEEEETTTTEE
T ss_pred             EEEEeCCCCCcCeEEEEecCCEEEEEeC-------CCCEEEEEECC--CCC-EEEEEeCCC----CCCceEEEecCCCeE
Confidence            2233333233455678888888877642       24689999986  331 123332222    345667888875544


Q ss_pred             EEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEe
Q 008927          316 FVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL  395 (548)
Q Consensus       316 ~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~  395 (548)
                      |.+|- .....|++.++++...+.+...  .+..|   .   .+++.+   ++++||+.-  .+...|+++|+++...+.
T Consensus       142 y~tD~-g~~~~I~r~~~dG~~~~~l~~~--~~~~P---~---Glald~---~~~~LY~aD--~~~~~I~~~~~dG~~~~~  207 (619)
T 3s94_A          142 YWTDW-GEVPKIERAGMDGSSRFIIINS--EIYWP---N---GLTLDY---EEQKLYWAD--AKLNFIHKSNLDGTNRQA  207 (619)
T ss_dssp             EEEEC-SSSCEEEEEETTSCSCEEEECS--SCSSE---E---EEEEET---TTTEEEEEE--TTTCCEEEESSSCCEEC-
T ss_pred             EEecc-CCCCEEEEEECCCCceEEEEeC--CCCCC---c---EEEEEc---cCCEEEEEe--CCCCeEEEecCCCCccEE
Confidence            45554 2235799999876655555421  12222   1   234432   578888763  345679999997765554


Q ss_pred             ecC-CCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          396 LDI-PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       396 l~~-~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      +.. ....-.+++.+++.+|++-   .....|+++|..+++
T Consensus       208 ~~~~~~~~P~gi~~~~~~ly~td---~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          208 VVKGSLPHPFALTLFEDILYWTD---WSTHSILACNKYTGE  245 (619)
T ss_dssp             --------CCCEEESSSEEEEEC---TTTCSEEEEESSSCC
T ss_pred             EEeCCCCCceEEEEeCCEEEEec---CCCCEEEEEECCCCc
Confidence            432 1111123455666665542   234678888876664

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.64  E-value=0.0021  Score=71.61  Aligned_cols=205  Identities=9%  Similarity=0.048  Sum_probs=114.5

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEE--CCEEEEEeCCCC
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNYKDQ  165 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~--~~~i~F~~~~~~  165 (548)
                      ..+..+.++| |+.++-..    .+|...||............+....    ..+.   .-.|+++  +..|+ +...++
T Consensus        10 ~~V~~l~~s~dg~~latg~----~dg~I~vwd~~~~~~~~~~~l~~h~----~~V~---~l~~s~~~~~~~l~-s~s~Dg   77 (753)
T 3jro_A           10 ELIHDAVLDYYGKRLATCS----SDKTIKIFEVEGETHKLIDTLTGHE----GPVW---RVDWAHPKFGTILA-SCSYDG   77 (753)
T ss_dssp             CCEEEECCCSSSCCEEEEE----TTTEEEEEEEETTEEEEEEEECCCS----SCEE---EEEECCTTSCSEEE-EEETTS
T ss_pred             ceeEEEEECCCCCeEEEEE----CCCcEEEEecCCCCCccceeccCCc----CceE---EEEecCCCCCCEEE-EEeCCC
Confidence            4567778888 77665443    2577777866422100111222111    1111   1245555  44444 444677


Q ss_pred             eEEEEeCCCCCCCc---eecCCCCCCCCceecceeeCCC--CCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee
Q 008927          166 RLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV  240 (548)
Q Consensus       166 ~Ly~~~~~~~~~~~---~~lT~~~~~~~~~~~~~~~SpD--G~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~  240 (548)
                      .|++.++.+  +..   ..+...    ...+....|+|+  |+.++....+         ..|.++|+.++.......+.
T Consensus        78 ~I~vwd~~~--~~~~~~~~~~~h----~~~V~~v~~sp~~~~~~l~sgs~d---------g~I~vwdl~~~~~~~~~~~~  142 (753)
T 3jro_A           78 KVLIWKEEN--GRWSQIAVHAVH----SASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKENGTTSPIIID  142 (753)
T ss_dssp             CEEEEEEET--TEEEEEEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCSSSCCCCEEEE
T ss_pred             eEEEEECCC--CcccccccccCC----CCCeEEEEECCCCCCCEEEEEeCC---------CcEEEEEeecCCCcceeEee
Confidence            777777765  432   223222    234667889999  8887765433         36888898877311133344


Q ss_pred             ecCCceeeeEECC-------------CCCEEEEEEecCCCCCCCCceEEEEEecCCCce-eeeEEEcCCCCCcccCCcCc
Q 008927          241 SGSDFYAFPRMDP-------------RGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVESPTEP  306 (548)
Q Consensus       241 ~~~~~~~~p~~SP-------------DGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~-~~~~~l~~~~~~~~~~~~~~  306 (548)
                      ..........|+|             ||+.|+....        ...|.+.|+..+... .....+.+..    ..+..+
T Consensus       143 ~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~--------dg~I~iwd~~~~~~~~~~~~~~~~h~----~~V~~l  210 (753)
T 3jro_A          143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA--------DNLVKIWKYNSDAQTYVLESTLEGHS----DWVRDV  210 (753)
T ss_dssp             CCSSCEEEEEECCCC---------CGGGCCEEEEET--------TSCEEEEEEETTTTEEEEEEEECCCS----SCEEEE
T ss_pred             cCCCceEEEEecCcccccccccccCCCCCEEEEEEC--------CCeEEEEeccCCcccceeeeeecCCC----CcEEEE
Confidence            4444567778999             5887775442        345888888743221 1122333333    467889


Q ss_pred             eECcC---CcEEEEEeCCCCeeeEEEEeccCC
Q 008927          307 KWSSK---GELFFVTDRKNGFWNLHKWIESNN  335 (548)
Q Consensus       307 ~wspD---G~L~~~sd~~~g~~~Ly~~d~~~g  335 (548)
                      .|+||   |++++.... +|.  |..+|+.++
T Consensus       211 ~~sp~~~~~~~l~s~s~-Dg~--I~iwd~~~~  239 (753)
T 3jro_A          211 AWSPTVLLRSYLASVSQ-DRT--CIIWTQDNE  239 (753)
T ss_dssp             EECCCCSSSEEEEEEES-SSC--EEEEEESSS
T ss_pred             EeccCCCCCCEEEEEec-CCE--EEEecCCCC
Confidence            99999   776555554 454  555555554

>4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp}

Probab=97.63  E-value=8.5e-05  Score=75.67  Aligned_cols=72  Identities=19%  Similarity=0.200  Sum_probs=52.1

Q ss_pred             CeEEEeeccCC--C--eEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccc-cCccC-----hHHHHHH-hcCcEEEE
Q 008927          461 PELIEFPTEVP--G--QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILN-----LSIQYWT-SRGWAFVD  529 (548)
Q Consensus       461 pe~i~~~s~~d--G--~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~-~~~~~-----~~~Q~~a-srGyaVl~  529 (548)
                      ...|.|.+. |  |  ..+.|+|+.|.++      .++.|+|++.||.+.... .+.+.     ...+.|+ ++||+|+.
T Consensus        43 ~~~i~Y~s~-d~~G~~~~~~g~l~~P~~~------~~~~PvV~~~HG~~~~~~~~ps~~~~~~~~~~~~lal~~Gy~Vv~  115 (377)
T 4ezi_A           43 LYKINYKTQ-SPDGNLTIASGLVAMPIHP------VGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVM  115 (377)
T ss_dssp             EEEEEEEEE-CTTSCEEEEEEEEEEESSC------SSCEEEEEEECCCCCSTTCSGGGCCGGGHHHHHHHTTTTCCEEEE
T ss_pred             EEEEEEEEE-CCCCCEEEEEEEEEECCCC------CCCCcEEEEeCCCcCCcccCCCcCcccchHHHHHHHHhCCcEEEE
Confidence            356788876 5  5  4589999999752      246899999999984211 11111     2456788 99999999


Q ss_pred             eCCCCCCCCC
Q 008927          530 VNYGGSTGLS  539 (548)
Q Consensus       530 ~NyRGStGyG  539 (548)
                      +||||..+-+
T Consensus       116 ~D~rG~G~s~  125 (377)
T 4ezi_A          116 PDYLGLGDNE  125 (377)
T ss_dssp             ECCTTSTTCC
T ss_pred             eCCCCCCCCC
Confidence            9999987655

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.63  E-value=0.0019  Score=63.91  Aligned_cols=105  Identities=11%  Similarity=0.034  Sum_probs=59.3

Q ss_pred             CCccCceEEcC-C--CcEEEEEecCCCCCceEEEEcCCCCCCCC-cccCCCCCCccccceeeCCeeeEEECCEEEEEeCC
Q 008927           88 SKRLGGTAVDG-H--GRLIWLESRPTEAGRGVLVKEPAKAGDEP-SDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK  163 (548)
Q Consensus        88 ~~~~~~~~~sp-g--~~i~~~~~~~~e~gr~~l~~~~~~~~~~~-~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~  163 (548)
                      ...+..+.++| +  +..+.....   +|...||.....+ ... +.+......+.       .-.|+++++.|+- ...
T Consensus        39 ~~~v~~~~~~~~~~~g~~l~~~~~---dg~i~iw~~~~~~-~~~~~~~~~h~~~v~-------~~~~~~~~~~l~s-~~~  106 (368)
T 3mmy_A           39 DDSIGCLSFSPPTLPGNFLIAGSW---ANDVRCWEVQDSG-QTIPKAQQMHTGPVL-------DVCWSDDGSKVFT-ASC  106 (368)
T ss_dssp             SSCEEEEEECCTTSSSEEEEEEET---TSEEEEEEECTTS-CEEEEEEEECSSCEE-------EEEECTTSSEEEE-EET
T ss_pred             CCceEEEEEcCCCCCceEEEEECC---CCcEEEEEcCCCC-ceeEEEeccccCCEE-------EEEECcCCCEEEE-EcC
Confidence            35678889998 4  465555433   5777788775421 111 12221111111       1256666666654 446


Q ss_pred             CCeEEEEeCCCCCCCceecCCCCCCCCceecceee--CCCCCEEEEEEe
Q 008927          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIF--DPRFNRYVTVRE  210 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~--SpDG~~i~~v~~  210 (548)
                      ++.|.+.++..  ++...+...    ...+..+.|  +|+++.|+....
T Consensus       107 dg~v~iwd~~~--~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~~  149 (368)
T 3mmy_A          107 DKTAKMWDLSS--NQAIQIAQH----DAPVKTIHWIKAPNYSCVMTGSW  149 (368)
T ss_dssp             TSEEEEEETTT--TEEEEEEEC----SSCEEEEEEEECSSCEEEEEEET
T ss_pred             CCcEEEEEcCC--CCceeeccc----cCceEEEEEEeCCCCCEEEEccC
Confidence            77888889876  555444332    234556677  899887766543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.004  Score=70.90  Aligned_cols=203  Identities=10%  Similarity=-0.002  Sum_probs=114.4

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +|+|++..|+-.. .++.|++.+..+  .+.......    ...+..+.|+| |+.|+....+         ..|.++|+
T Consensus        24 afspdg~~lAsgs-~Dg~I~lw~~~~--~~~~~~~~~----~~~V~~l~fsp-g~~L~S~s~D---------~~v~lWd~   86 (902)
T 2oaj_A           24 AFDFTQNLLAIAT-VTGEVHIYGQQQ--VEVVIKLED----RSAIKEMRFVK-GIYLVVINAK---------DTVYVLSL   86 (902)
T ss_dssp             EEETTTTEEEEEE-TTSEEEEECSTT--CEEEEECSS----CCCEEEEEEET-TTEEEEEETT---------CEEEEEET
T ss_pred             EECCCCCEEEEEe-CCCEEEEEeCCC--cEEEEEcCC----CCCEEEEEEcC-CCEEEEEECc---------CeEEEEEC
Confidence            5777777666544 567888888765  333222222    23466778999 8866665433         46888899


Q ss_pred             CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEE---------EcCCCCCc
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC---------VAGFDPTI  299 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~---------l~~~~~~~  299 (548)
                      .+++   ........+.+....|+|||++|+-.. .       ...|.+.|++. +.....+.         +.+..   
T Consensus        87 ~~~~---~~~~~~~~~~V~~v~~sp~g~~l~sgs-~-------dg~V~lwd~~~-~~~~~~~i~~~~~~~~~~~~h~---  151 (902)
T 2oaj_A           87 YSQK---VLTTVFVPGKITSIDTDASLDWMLIGL-Q-------NGSMIVYDIDR-DQLSSFKLDNLQKSSFFPAARL---  151 (902)
T ss_dssp             TTCS---EEEEEECSSCEEEEECCTTCSEEEEEE-T-------TSCEEEEETTT-TEEEEEEECCHHHHHTCSSSCC---
T ss_pred             CCCc---EEEEEcCCCCEEEEEECCCCCEEEEEc-C-------CCcEEEEECCC-CccccceeccccccccccccCC---
Confidence            9886   332223444567788999999987443 1       34688889874 43211111         11111   


Q ss_pred             ccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCC----------cccccCcceeeeeecCCC
Q 008927          300 VESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP----------LWVFGINSYEIIQSHGEK  368 (548)
Q Consensus       300 ~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p----------~w~~~~~~~~~~~~~~d~  368 (548)
                       ..+....|+|++. ++++... +|  .+ ++|+.+++...........+.+          ..........|.|   ++
T Consensus       152 -~~V~sl~~sp~~~~~l~~g~~-dg--~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp---dg  223 (902)
T 2oaj_A          152 -SPIVSIQWNPRDIGTVLISYE-YV--TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP---NS  223 (902)
T ss_dssp             -CCCCEEEEETTEEEEEEEECS-SC--EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT---TS
T ss_pred             -CCeEEEEEccCCCCEEEEEeC-CC--cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC---CC
Confidence             4577899999764 5555544 44  46 7788777654322111000000          0000122355664   66


Q ss_pred             CEEEEEEEeCCeEEEEEEECCCCceE
Q 008927          369 NLIACSYRQNGRSYLGILDDFGHSLS  394 (548)
Q Consensus       369 ~~l~~~~~~~g~~~L~~~dl~~g~~~  394 (548)
                      +.| ++...++.  |.+.|+.+++..
T Consensus       224 ~~l-asgs~Dg~--i~lWd~~~g~~~  246 (902)
T 2oaj_A          224 LHI-ITIHEDNS--LVFWDANSGHMI  246 (902)
T ss_dssp             SEE-EEEETTCC--EEEEETTTCCEE
T ss_pred             CEE-EEEECCCe--EEEEECCCCcEE
Confidence            554 45555664  556688777653

>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV}

Probab=97.61  E-value=4.5e-05  Score=73.95  Aligned_cols=66  Identities=18%  Similarity=0.172  Sum_probs=52.9

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCCh
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSS  540 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~  540 (548)
                      .+.+++++  ||.+++++++.|.          +.|+||++||++...  ..|....+.|+.+||.|+.+|+||......
T Consensus         6 ~~~~~~~~--~g~~l~~~~~~p~----------~~p~vv~~HG~~~~~--~~~~~~~~~l~~~g~~v~~~d~~G~g~s~~   71 (290)
T 3ksr_A            6 LSSIEIPV--GQDELSGTLLTPT----------GMPGVLFVHGWGGSQ--HHSLVRAREAVGLGCICMTFDLRGHEGYAS   71 (290)
T ss_dssp             EEEEEEEE--TTEEEEEEEEEEE----------SEEEEEEECCTTCCT--TTTHHHHHHHHTTTCEEECCCCTTSGGGGG
T ss_pred             eeeEEecC--CCeEEEEEEecCC----------CCcEEEEeCCCCCCc--CcHHHHHHHHHHCCCEEEEeecCCCCCCCC
Confidence            46677877  7899999999983          459999999998643  345667789999999999999998765443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=97.61  E-value=0.02  Score=56.65  Aligned_cols=195  Identities=14%  Similarity=0.077  Sum_probs=102.3

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCC
Q 008927          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (548)
Q Consensus       192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~  271 (548)
                      .+....|+||++.|+....+         ..|.++|+.+++.  ...+....+.+....|||||++|+-...        
T Consensus        78 ~V~~~~~~~~~~~l~s~s~D---------~~v~lwd~~~~~~--~~~~~~h~~~v~~v~~sp~~~~l~s~~~--------  138 (343)
T 2xzm_R           78 FVSDLALSQENCFAISSSWD---------KTLRLWDLRTGTT--YKRFVGHQSEVYSVAFSPDNRQILSAGA--------  138 (343)
T ss_dssp             CEEEEEECSSTTEEEEEETT---------SEEEEEETTSSCE--EEEEECCCSCEEEEEECSSTTEEEEEET--------
T ss_pred             ceEEEEECCCCCEEEEEcCC---------CcEEEEECCCCcE--EEEEcCCCCcEEEEEECCCCCEEEEEcC--------
Confidence            45677899999987665433         3688889998861  2344444455677899999998874441        


Q ss_pred             CceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCC----------cEEEEEeCCCCeeeEEEEeccCCeeE-ee
Q 008927          272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG----------ELFFVTDRKNGFWNLHKWIESNNEVL-AI  340 (548)
Q Consensus       272 ~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG----------~L~~~sd~~~g~~~Ly~~d~~~g~~~-~l  340 (548)
                      ...|.+.++.. ..   ........ .....+....|+|++          .+++.... +|.  |..+|. .++.. .+
T Consensus       139 d~~i~~wd~~~-~~---~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~--i~iwd~-~~~~~~~~  209 (343)
T 2xzm_R          139 EREIKLWNILG-EC---KFSSAEKE-NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW-DGR--LKVWNT-NFQIRYTF  209 (343)
T ss_dssp             TSCEEEEESSS-CE---EEECCTTT-SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET-TSE--EEEEET-TTEEEEEE
T ss_pred             CCEEEEEeccC-Cc---eeeeeccc-CCCceeeeeeeccccccccccCCCCCEEEEEcC-CCE--EEEEcC-CCceeEEE
Confidence            24577778762 21   11111100 000345667888887          44444444 454  555564 33322 22


Q ss_pred             cccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCC-Cc-eEeecCCCceeEee--eecCCEEEEE
Q 008927          341 YSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG-HS-LSLLDIPFTDIDNI--TLGNDCLFVE  416 (548)
Q Consensus       341 ~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~-g~-~~~l~~~~~~~~~~--s~d~~~l~~~  416 (548)
                      ...    ..+     .....|.|   +++.| ++...++.  |.++|+.. +. ...+... ..+..+  ++++..+ ..
T Consensus       210 ~~h----~~~-----v~~~~~s~---~g~~l-~sgs~dg~--v~iwd~~~~~~~~~~~~~~-~~v~~v~~sp~~~~l-a~  272 (343)
T 2xzm_R          210 KAH----ESN-----VNHLSISP---NGKYI-ATGGKDKK--LLIWDILNLTYPQREFDAG-STINQIAFNPKLQWV-AV  272 (343)
T ss_dssp             ECC----SSC-----EEEEEECT---TSSEE-EEEETTCE--EEEEESSCCSSCSEEEECS-SCEEEEEECSSSCEE-EE
T ss_pred             cCc----ccc-----ceEEEECC---CCCEE-EEEcCCCe--EEEEECCCCcccceeecCC-CcEEEEEECCCCCEE-EE
Confidence            111    111     12245654   56555 45555554  45556632 22 2222221 224433  5666543 33


Q ss_pred             EecCCCCCeEEEEEcCCCc
Q 008927          417 GASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       417 ~ss~~~p~~l~~~d~~~~~  435 (548)
                      +..    ..+.++++.+++
T Consensus       273 ~~d----~~v~iw~~~~~~  287 (343)
T 2xzm_R          273 GTD----QGVKIFNLMTQS  287 (343)
T ss_dssp             EES----SCEEEEESSSCC
T ss_pred             ECC----CCEEEEEeCCCC
Confidence            332    347788876654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.61  E-value=0.011  Score=56.95  Aligned_cols=236  Identities=13%  Similarity=0.091  Sum_probs=125.1

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCC-CcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCe
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDE-PSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR  166 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~-~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~  166 (548)
                      ..+..+.++| ++.++...    .+|...+|.+....... ...+....    ..+     ....++++.|+.. ..++.
T Consensus        60 ~~v~~~~~~~~~~~l~~~~----~dg~i~~~~~~~~~~~~~~~~~~~~~----~~i-----~~~~~~~~~l~~~-~~d~~  125 (313)
T 3odt_A           60 GFLNSVCYDSEKELLLFGG----KDTMINGVPLFATSGEDPLYTLIGHQ----GNV-----CSLSFQDGVVISG-SWDKT  125 (313)
T ss_dssp             SCEEEEEEETTTTEEEEEE----TTSCEEEEETTCCTTSCC-CEECCCS----SCE-----EEEEEETTEEEEE-ETTSE
T ss_pred             ccEEEEEECCCCCEEEEec----CCCeEEEEEeeecCCCCcccchhhcc----cCE-----EEEEecCCEEEEE-eCCCC
Confidence            4567788998 55554433    25777778765431111 11121111    111     2344566655544 45677


Q ss_pred             EEEEeCCCCCCCceecCCCCCCCCceecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee-cCC
Q 008927          167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSD  244 (548)
Q Consensus       167 Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~Sp-DG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~-~~~  244 (548)
                      |.+.+ .+  .....+...    ........|+| +++.|+....+         ..|.++|....    ...+.. ...
T Consensus       126 i~~~d-~~--~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~----~~~~~~~~~~  185 (313)
T 3odt_A          126 AKVWK-EG--SLVYNLQAH----NASVWDAKVVSFSENKFLTASAD---------KTIKLWQNDKV----IKTFSGIHND  185 (313)
T ss_dssp             EEEEE-TT--EEEEEEECC----SSCEEEEEEEETTTTEEEEEETT---------SCEEEEETTEE----EEEECSSCSS
T ss_pred             EEEEc-CC--cEEEecccC----CCceeEEEEccCCCCEEEEEECC---------CCEEEEecCce----EEEEeccCcc
Confidence            77777 22  223334332    12344556766 88887665433         24667773222    233332 344


Q ss_pred             ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCe
Q 008927          245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGF  324 (548)
Q Consensus       245 ~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~  324 (548)
                      ......|+|+|+ |+...        ....|++.++.. ++  ....+....    ..+....|+|||+|+..+ . +| 
T Consensus       186 ~i~~~~~~~~~~-~~~~~--------~dg~i~i~d~~~-~~--~~~~~~~~~----~~i~~~~~~~~~~l~~~~-~-dg-  246 (313)
T 3odt_A          186 VVRHLAVVDDGH-FISCS--------NDGLIKLVDMHT-GD--VLRTYEGHE----SFVYCIKLLPNGDIVSCG-E-DR-  246 (313)
T ss_dssp             CEEEEEEEETTE-EEEEE--------TTSEEEEEETTT-CC--EEEEEECCS----SCEEEEEECTTSCEEEEE-T-TS-
T ss_pred             cEEEEEEcCCCe-EEEcc--------CCCeEEEEECCc-hh--hhhhhhcCC----ceEEEEEEecCCCEEEEe-c-CC-
Confidence            567788999998 55333        135799999974 43  233344333    457788999999644333 2 33 


Q ss_pred             eeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce
Q 008927          325 WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (548)
Q Consensus       325 ~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~  393 (548)
                       .|+.+|+.+++........   ..+.     ....+.|   +++ ++ +...++  .|+++|+.+++.
T Consensus       247 -~v~iwd~~~~~~~~~~~~~---~~~i-----~~~~~~~---~~~-~~-~~~~dg--~i~iw~~~~~~~  299 (313)
T 3odt_A          247 -TVRIWSKENGSLKQVITLP---AISI-----WSVDCMS---NGD-II-VGSSDN--LVRIFSQEKSRW  299 (313)
T ss_dssp             -EEEEECTTTCCEEEEEECS---SSCE-----EEEEECT---TSC-EE-EEETTS--CEEEEESCGGGC
T ss_pred             -EEEEEECCCCceeEEEecc---CceE-----EEEEEcc---CCC-EE-EEeCCC--cEEEEeCCCCce
Confidence             5777888777654433211   1111     1244553   554 43 344455  455667666543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.60  E-value=0.0046  Score=60.57  Aligned_cols=203  Identities=10%  Similarity=0.036  Sum_probs=103.4

Q ss_pred             CccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC--Ce
Q 008927           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QR  166 (548)
Q Consensus        89 ~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~--~~  166 (548)
                      .....+.++|.+++||....   .+  .|++++.+  +....+....    ...   .+-++.++| .|++.+...  .+
T Consensus        32 ~~pegia~~~~g~lyv~d~~---~~--~I~~~d~~--g~~~~~~~~~----~~p---~gia~~~dG-~l~vad~~~~~~~   96 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHE---VG--EIVSITPD--GNQQIHATVE----GKV---SGLAFTSNG-DLVATGWNADSIP   96 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETT---TT--EEEEECTT--CCEEEEEECS----SEE---EEEEECTTS-CEEEEEECTTSCE
T ss_pred             CCcceEEECCCCCEEEEeCC---CC--eEEEECCC--CceEEEEeCC----CCc---eeEEEcCCC-cEEEEeccCCcce
Confidence            34567899884458777632   23  47777665  2332222111    011   011233334 466655332  36


Q ss_pred             EEEEeCCCCCCCceecCCCCCCCCceec-ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee-----
Q 008927          167 LYKHSIDSKDSSPLPITPDYGEPLVSYA-DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-----  240 (548)
Q Consensus       167 Ly~~~~~~~~~~~~~lT~~~~~~~~~~~-~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~-----  240 (548)
                      |++++...  ++.+.+....   ..++. .....+++ .+ |+.+..       ...||++|..+++   .++..     
T Consensus        97 v~~~d~~~--g~~~~~~~~~---~~~~~~g~~~~~~~-~~-~v~d~~-------~g~i~~~d~~~~~---~~v~~~~~~~  159 (306)
T 2p4o_A           97 VVSLVKSD--GTVETLLTLP---DAIFLNGITPLSDT-QY-LTADSY-------RGAIWLIDVVQPS---GSIWLEHPML  159 (306)
T ss_dssp             EEEEECTT--SCEEEEEECT---TCSCEEEEEESSSS-EE-EEEETT-------TTEEEEEETTTTE---EEEEEECGGG
T ss_pred             EEEEcCCC--CeEEEEEeCC---CccccCcccccCCC-cE-EEEECC-------CCeEEEEeCCCCc---EeEEEECCcc
Confidence            99988765  5665553321   12222 23334444 43 433321       2489999988763   22210     


Q ss_pred             ---e-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEE
Q 008927          241 ---S-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF  316 (548)
Q Consensus       241 ---~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~  316 (548)
                         . ...+...-.++|||++|++.. .      ....|++++++.+|++.....+...     .....+..++||+| |
T Consensus       160 ~~~~~~~~~~~pngis~dg~~lyv~d-~------~~~~I~~~~~~~~g~~~~~~~~~~~-----~~P~gi~vd~dG~l-~  226 (306)
T 2p4o_A          160 ARSNSESVFPAANGLKRFGNFLYVSN-T------EKMLLLRIPVDSTDKPGEPEIFVEQ-----TNIDDFAFDVEGNL-Y  226 (306)
T ss_dssp             SCSSTTCCSCSEEEEEEETTEEEEEE-T------TTTEEEEEEBCTTSCBCCCEEEEES-----CCCSSEEEBTTCCE-E
T ss_pred             ccccccCCCCcCCCcCcCCCEEEEEe-C------CCCEEEEEEeCCCCCCCccEEEecc-----CCCCCeEECCCCCE-E
Confidence               0 011111112489999876443 2      2468999999743543333333221     12355788999986 5


Q ss_pred             EEeCCCCeeeEEEEeccCCeeEe
Q 008927          317 VTDRKNGFWNLHKWIESNNEVLA  339 (548)
Q Consensus       317 ~sd~~~g~~~Ly~~d~~~g~~~~  339 (548)
                      +++.  +...|++++++ |+...
T Consensus       227 va~~--~~~~V~~~~~~-G~~~~  246 (306)
T 2p4o_A          227 GATH--IYNSVVRIAPD-RSTTI  246 (306)
T ss_dssp             EECB--TTCCEEEECTT-CCEEE
T ss_pred             EEeC--CCCeEEEECCC-CCEEE
Confidence            5554  22468889875 55443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.60  E-value=0.0076  Score=59.45  Aligned_cols=110  Identities=7%  Similarity=-0.040  Sum_probs=71.9

Q ss_pred             eeEEEC--CEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927          149 AFRIFG--DTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       149 ~~~~~~--~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      +|++++  +.++++...++.|.+.++...+... +.+...    ...+..+.|+|||+.|+....+         ..|.+
T Consensus        46 ~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~d---------g~v~i  112 (368)
T 3mmy_A           46 SFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMH----TGPVLDVCWSDDGSKVFTASCD---------KTAKM  112 (368)
T ss_dssp             EECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEEC----SSCEEEEEECTTSSEEEEEETT---------SEEEE
T ss_pred             EEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccc----cCCEEEEEECcCCCEEEEEcCC---------CcEEE
Confidence            566664  4555665567777777766410222 233322    2346678899999988765433         36888


Q ss_pred             EECCCCCccCcEEeeecCCceeeeEE--CCCCCEEEEEEecCCCCCCCCceEEEEEecC
Q 008927          226 IALNGQNIQEPKVLVSGSDFYAFPRM--DPRGERMAWIEWHHPNMPWDKAELWVGYISE  282 (548)
Q Consensus       226 idl~~g~~~~~~~L~~~~~~~~~p~~--SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~  282 (548)
                      +|+.+++   ...+......+....|  +|||+.|+....        ...|++.|+..
T Consensus       113 wd~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--------dg~i~vwd~~~  160 (368)
T 3mmy_A          113 WDLSSNQ---AIQIAQHDAPVKTIHWIKAPNYSCVMTGSW--------DKTLKFWDTRS  160 (368)
T ss_dssp             EETTTTE---EEEEEECSSCEEEEEEEECSSCEEEEEEET--------TSEEEEECSSC
T ss_pred             EEcCCCC---ceeeccccCceEEEEEEeCCCCCEEEEccC--------CCcEEEEECCC
Confidence            9999987   5556555555677788  999998875441        35689999874

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.60  E-value=0.0022  Score=61.16  Aligned_cols=156  Identities=10%  Similarity=-0.070  Sum_probs=92.2

Q ss_pred             EEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927          151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (548)
Q Consensus       151 ~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~  229 (548)
                      ..+++.||.+...+++|.++|+++  ++. +.+ -.    ...++. ...++|++|+.+ ...       .+.++++|++
T Consensus        61 ~~~~~~Ly~stG~~g~v~~iD~~T--gkv~~~~-l~----~~~Fge-Git~~g~~Ly~l-tw~-------~~~v~V~D~~  124 (268)
T 3nok_A           61 VFHQGHFFESTGHQGTLRQLSLES--AQPVWME-RL----GNIFAE-GLASDGERLYQL-TWT-------EGLLFTWSGM  124 (268)
T ss_dssp             EEETTEEEEEETTTTEEEECCSSC--SSCSEEE-EC----TTCCEE-EEEECSSCEEEE-ESS-------SCEEEEEETT
T ss_pred             EEECCEEEEEcCCCCEEEEEECCC--CcEEeEE-CC----CCccee-EEEEeCCEEEEE-Ecc-------CCEEEEEECC
Confidence            346789999887788899999987  443 444 21    111222 245677777554 322       2589999999


Q ss_pred             CCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (548)
Q Consensus       230 ~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws  309 (548)
                      +.+.  ...+.-...   ...+++||++|+ ++ +.      ..+|+++|.++ .++.....+.... ........+.|.
T Consensus       125 Tl~~--~~ti~~~~e---GwGLt~Dg~~L~-vS-dG------s~~l~~iDp~T-~~v~~~I~V~~~g-~~v~~lNeLe~~  189 (268)
T 3nok_A          125 PPQR--ERTTRYSGE---GWGLCYWNGKLV-RS-DG------GTMLTFHEPDG-FALVGAVQVKLRG-QPVELINELECA  189 (268)
T ss_dssp             TTEE--EEEEECSSC---CCCEEEETTEEE-EE-CS------SSEEEEECTTT-CCEEEEEECEETT-EECCCEEEEEEE
T ss_pred             cCcE--EEEEeCCCc---eeEEecCCCEEE-EE-CC------CCEEEEEcCCC-CeEEEEEEeCCCC-cccccccccEEe
Confidence            9862  233332221   124567899774 65 22      46899999874 4432222232221 100123456776


Q ss_pred             cCCcEEEEEeCCCCeeeEEEEeccCCeeEeec
Q 008927          310 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (548)
Q Consensus       310 pDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~  341 (548)
                       ||+||..... .  ..|.++|+++|++....
T Consensus       190 -dG~lyanvw~-s--~~I~vIDp~TG~V~~~I  217 (268)
T 3nok_A          190 -NGVIYANIWH-S--SDVLEIDPATGTVVGVI  217 (268)
T ss_dssp             -TTEEEEEETT-C--SEEEEECTTTCBEEEEE
T ss_pred             -CCEEEEEECC-C--CeEEEEeCCCCcEEEEE
Confidence             8877644433 2  37999999999876443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.60  E-value=0.012  Score=56.03  Aligned_cols=193  Identities=11%  Similarity=0.083  Sum_probs=105.0

Q ss_pred             ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCce
Q 008927          195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE  274 (548)
Q Consensus       195 ~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~  274 (548)
                      .+.++ |+ . +|++....     ..+.|.++|+++|+.  .+.+.-+.. +..-.+.++|++|..+.|       ....
T Consensus        47 GL~~~-~~-~-LyestG~~-----g~S~v~~vD~~Tgkv--~~~~~l~~~-~FgeGit~~g~~ly~ltw-------~~~~  108 (262)
T 3nol_A           47 GFFYR-NG-Y-FYESTGLN-----GRSSIRKVDIESGKT--LQQIELGKR-YFGEGISDWKDKIVGLTW-------KNGL  108 (262)
T ss_dssp             EEEEE-TT-E-EEEEEEET-----TEEEEEEECTTTCCE--EEEEECCTT-CCEEEEEEETTEEEEEES-------SSSE
T ss_pred             eEEEE-CC-E-EEEECCCC-----CCceEEEEECCCCcE--EEEEecCCc-cceeEEEEeCCEEEEEEe-------eCCE
Confidence            45566 54 4 45443321     246899999999982  233332222 222246668888865554       4578


Q ss_pred             EEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccc
Q 008927          275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF  354 (548)
Q Consensus       275 L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~  354 (548)
                      ++++|.++ .++  ...+.-..       .....++||+.+|++|. +  ..|+.+|+++.++..-.+.. +.+.|.  .
T Consensus       109 v~v~D~~t-~~~--~~ti~~~~-------eG~glt~dg~~L~~SdG-s--~~i~~iDp~T~~v~~~I~V~-~~g~~~--~  172 (262)
T 3nol_A          109 GFVWNIRN-LRQ--VRSFNYDG-------EGWGLTHNDQYLIMSDG-T--PVLRFLDPESLTPVRTITVT-AHGEEL--P  172 (262)
T ss_dssp             EEEEETTT-CCE--EEEEECSS-------CCCCEEECSSCEEECCS-S--SEEEEECTTTCSEEEEEECE-ETTEEC--C
T ss_pred             EEEEECcc-CcE--EEEEECCC-------CceEEecCCCEEEEECC-C--CeEEEEcCCCCeEEEEEEec-cCCccc--c
Confidence            99999874 442  22332211       11234578886666664 3  47999999887754221110 000110  0


Q ss_pred             cCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eecCC------------CceeEee--eecCCEEEEEEec
Q 008927          355 GINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIP------------FTDIDNI--TLGNDCLFVEGAS  419 (548)
Q Consensus       355 ~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~~~------------~~~~~~~--s~d~~~l~~~~ss  419 (548)
                      ..+.+.+.    + ++|+...  -....|+++|+++|++. .+...            .....++  +++++++++++- 
T Consensus       173 ~lNELe~~----~-G~lyan~--w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK-  244 (262)
T 3nol_A          173 ELNELEWV----D-GEIFANV--WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK-  244 (262)
T ss_dssp             CEEEEEEE----T-TEEEEEE--TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET-
T ss_pred             ccceeEEE----C-CEEEEEE--ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC-
Confidence            11123343    3 4666433  23347999999999875 34321            1123444  566777777663 


Q ss_pred             CCCCCeEEEEEc
Q 008927          420 GVEPSSVAKVTL  431 (548)
Q Consensus       420 ~~~p~~l~~~d~  431 (548)
                        .-+.+|.+.+
T Consensus       245 --~Wp~~~ev~~  254 (262)
T 3nol_A          245 --LWPKVFEITL  254 (262)
T ss_dssp             --TCSEEEEEEE
T ss_pred             --CCCceEEEEE
Confidence              3467777654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.58  E-value=0.0047  Score=58.91  Aligned_cols=155  Identities=10%  Similarity=0.029  Sum_probs=88.3

Q ss_pred             ECCEEEEEeCCC--CeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927          153 FGDTVIFSNYKD--QRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (548)
Q Consensus       153 ~~~~i~F~~~~~--~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~  229 (548)
                      +++.||.+....  ..|.++|+++  ++.. .+.-.    ...++. ...++|++|+.+ ...       .+.++++|++
T Consensus        51 ~~~~LyestG~~g~S~v~~vD~~T--gkv~~~~~l~----~~~Fge-Git~~g~~ly~l-tw~-------~~~v~v~D~~  115 (262)
T 3nol_A           51 RNGYFYESTGLNGRSSIRKVDIES--GKTLQQIELG----KRYFGE-GISDWKDKIVGL-TWK-------NGLGFVWNIR  115 (262)
T ss_dssp             ETTEEEEEEEETTEEEEEEECTTT--CCEEEEEECC----TTCCEE-EEEEETTEEEEE-ESS-------SSEEEEEETT
T ss_pred             ECCEEEEECCCCCCceEEEEECCC--CcEEEEEecC----Ccccee-EEEEeCCEEEEE-Eee-------CCEEEEEECc
Confidence            466777776443  3899999987  5543 33222    111222 245578887554 322       2589999999


Q ss_pred             CCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (548)
Q Consensus       230 ~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws  309 (548)
                      +.+.  ...+.-+.   ....+++||++|+ ++ +.      ..+|+++|.++ .++.....+.... ........+.|.
T Consensus       116 t~~~--~~ti~~~~---eG~glt~dg~~L~-~S-dG------s~~i~~iDp~T-~~v~~~I~V~~~g-~~~~~lNELe~~  180 (262)
T 3nol_A          116 NLRQ--VRSFNYDG---EGWGLTHNDQYLI-MS-DG------TPVLRFLDPES-LTPVRTITVTAHG-EELPELNELEWV  180 (262)
T ss_dssp             TCCE--EEEEECSS---CCCCEEECSSCEE-EC-CS------SSEEEEECTTT-CSEEEEEECEETT-EECCCEEEEEEE
T ss_pred             cCcE--EEEEECCC---CceEEecCCCEEE-EE-CC------CCeEEEEcCCC-CeEEEEEEeccCC-ccccccceeEEE
Confidence            9872  23343222   1124567898774 55 21      35799999874 4432222232211 000122346786


Q ss_pred             cCCcEEEEEeCCCCeeeEEEEeccCCeeEeec
Q 008927          310 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (548)
Q Consensus       310 pDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~  341 (548)
                       ||+||..... .  ..|+++|+++|++....
T Consensus       181 -~G~lyan~w~-~--~~I~vIDp~tG~V~~~I  208 (262)
T 3nol_A          181 -DGEIFANVWQ-T--NKIVRIDPETGKVTGII  208 (262)
T ss_dssp             -TTEEEEEETT-S--SEEEEECTTTCBEEEEE
T ss_pred             -CCEEEEEEcc-C--CeEEEEECCCCcEEEEE
Confidence             8877654433 2  37999999999976543

>2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae}

Probab=97.58  E-value=7.9e-05  Score=71.03  Aligned_cols=74  Identities=15%  Similarity=0.043  Sum_probs=48.2

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccCh--HHHHH-HhcCcEEEEeCCCCCC
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL--SIQYW-TSRGWAFVDVNYGGST  536 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~--~~Q~~-asrGyaVl~~NyRGSt  536 (548)
                      .+.++|.+..+|.++..++|.|.+.+....+.+++|+||++||+.....  .|..  ..+.+ +.+||+|+.+|+|++.
T Consensus         7 ~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~   83 (263)
T 2uz0_A            7 VMKIEYYSQVLDMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGNHN--SWLKRTNVERLLRGTNLIVVMPNTSNGW   83 (263)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECC---------CCBCEEEEECCTTCCTT--HHHHHSCHHHHTTTCCCEEEECCCTTST
T ss_pred             EeEEEEechhhCCceeEEEEeCCCccccCCcCCCCCEEEEECCCCCCHH--HHHhccCHHHHHhcCCeEEEEECCCCCc
Confidence            3566777643688999999999752111112467899999999985433  2222  23444 4589999999999874

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.57  E-value=0.0044  Score=59.52  Aligned_cols=200  Identities=11%  Similarity=0.072  Sum_probs=112.4

Q ss_pred             CceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEEEEe
Q 008927           92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS  171 (548)
Q Consensus        92 ~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~~~  171 (548)
                      ..+.++|.+++|.....   .+.+.|..++... ++...-.+-+    ..   +.+-.+++++++||.....++.++++|
T Consensus        24 ~Gl~~~~dg~Lyvstg~---~~~s~v~~iD~~t-g~v~~~i~l~----~~---~fgeGi~~~g~~lyv~t~~~~~v~viD   92 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGL---YGRSSVRQVALQT-GKVENIHKMD----DS---YFGEGLTLLNEKLYQVVWLKNIGFIYD   92 (266)
T ss_dssp             EEEEECSTTEEEEEECS---TTTCEEEEEETTT-CCEEEEEECC----TT---CCEEEEEEETTEEEEEETTCSEEEEEE
T ss_pred             ccEEEeCCCeEEEECCC---CCCCEEEEEECCC-CCEEEEEecC----CC---cceEEEEEeCCEEEEEEecCCEEEEEE
Confidence            56778853344333322   2556677676543 3333221110    00   112246778999999998889999999


Q ss_pred             CCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC--C---c
Q 008927          172 IDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS--D---F  245 (548)
Q Consensus       172 ~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~--~---~  245 (548)
                      .++  .+. ..+... .  +   ....+++||++++ ++. .       .+.|+.+|.++.+.  .+.+.-+.  .   +
T Consensus        93 ~~t--~~v~~~i~~g-~--~---~g~glt~Dg~~l~-vs~-g-------s~~l~viD~~t~~v--~~~I~Vg~~~~p~~~  153 (266)
T 2iwa_A           93 RRT--LSNIKNFTHQ-M--K---DGWGLATDGKILY-GSD-G-------TSILYEIDPHTFKL--IKKHNVKYNGHRVIR  153 (266)
T ss_dssp             TTT--TEEEEEEECC-S--S---SCCEEEECSSSEE-EEC-S-------SSEEEEECTTTCCE--EEEEECEETTEECCC
T ss_pred             CCC--CcEEEEEECC-C--C---CeEEEEECCCEEE-EEC-C-------CCeEEEEECCCCcE--EEEEEECCCCccccc
Confidence            976  333 334322 0  1   1234778999865 443 2       25899999999762  33333221  1   1


Q ss_pred             eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCC--------CCCcccCCcCceECcCCcEEEE
Q 008927          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF--------DPTIVESPTEPKWSSKGELFFV  317 (548)
Q Consensus       246 ~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~--------~~~~~~~~~~~~wspDG~L~~~  317 (548)
                      .....|. || +| |+..      |....|.++|.++ |++.....+.+.        ... .......+|+|||+.+|+
T Consensus       154 ~nele~~-dg-~l-yvn~------~~~~~V~vID~~t-g~V~~~I~~~g~~~~~~~~~~~~-~~v~nGIa~~~~~~~lfV  222 (266)
T 2iwa_A          154 LNELEYI-NG-EV-WANI------WQTDCIARISAKD-GTLLGWILLPNLRKKLIDEGFRD-IDVLNGIAWDQENKRIFV  222 (266)
T ss_dssp             EEEEEEE-TT-EE-EEEE------TTSSEEEEEETTT-CCEEEEEECHHHHHHHHHTTCTT-CCCEEEEEEETTTTEEEE
T ss_pred             ceeEEEE-CC-EE-EEec------CCCCeEEEEECCC-CcEEEEEECCCcccccccccccc-cCceEEEEEcCCCCEEEE
Confidence            2233456 67 44 5552      3356899999984 664332223210        000 012356789999997777


Q ss_pred             EeCCCCeeeEEEEeccC
Q 008927          318 TDRKNGFWNLHKWIESN  334 (548)
Q Consensus       318 sd~~~g~~~Ly~~d~~~  334 (548)
                      +.+  .+..||.+++..
T Consensus       223 Tgk--~~~~v~~i~l~~  237 (266)
T 2iwa_A          223 TGK--LWPKLFEIKLHL  237 (266)
T ss_dssp             EET--TCSEEEEEEEEE
T ss_pred             ECC--CCCeEEEEEEec
Confidence            765  566788888744

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.56  E-value=0.013  Score=63.55  Aligned_cols=197  Identities=12%  Similarity=0.099  Sum_probs=116.3

Q ss_pred             EECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCC
Q 008927          152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ  231 (548)
Q Consensus       152 ~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g  231 (548)
                      +.++.|||++...+.|++++++|  ...+.+....   -.....+++++.++.|++. +..       ...|.++++++.
T Consensus       358 ~~~~~ly~sD~~~~~I~r~~~~g--~~~~~v~~~~---~~~p~GlAvD~~~~~lY~t-D~~-------~~~I~v~~~~G~  424 (619)
T 3s94_A          358 PVEGYIYWTDDEVRAIRRSFIDG--SGSQFVVTAQ---IAHPDGIAVDWVARNLYWT-DTG-------TDRIEVTRLNGT  424 (619)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTS--CSCEEEECSS---CSCCCEEEEETTTTEEEEE-ETT-------TTEEEEEETTSC
T ss_pred             cCCCeEEEEeCCCCeEEEEEcCC--CccEEEEECC---CCCcCceEEecccCcEEEE-eCC-------CCcEEEEeCCCC
Confidence            33679999988788999999987  5555443321   1123456777777777664 321       358999999988


Q ss_pred             CccCcEEeeec-CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc
Q 008927          232 NIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS  310 (548)
Q Consensus       232 ~~~~~~~L~~~-~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp  310 (548)
                      .   .+.|... -..-...++.|....|+|..|..      ...|+.+++++..   ...++...-    .....+..++
T Consensus       425 ~---~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~------~~~I~r~~~dG~~---~~~l~~~~l----~~P~GlalD~  488 (619)
T 3s94_A          425 M---RKILISEDLEEPRAIVLDPMVGYMYWTDWGE------IPKIERAALDGSD---RVVLVNTSL----GWPNGLALDY  488 (619)
T ss_dssp             S---CEEEECTTCCSEEEEEEETTTTEEEEEECSS------SCEEEEEETTSCS---CEEEECSSC----SCEEEEEEET
T ss_pred             e---EEEEEECCCCCeeeEEEEcCCCcEEEecCCC------CCEEEEEccCCCc---cEEEEeCCC----CCCeeeEEcc
Confidence            6   6666532 22234557888767788776532      3579998887322   122333211    2344567787


Q ss_pred             CCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECC
Q 008927          311 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF  389 (548)
Q Consensus       311 DG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~  389 (548)
                      +++ ||+. |.  +...|+++++++...+.+...  ....|   ++   ++.     .++.||++-  -+...|+++|..
T Consensus       489 ~~~~LY~a-D~--~~~~I~~~~~dG~~~~~~~~~--~l~~P---~g---lav-----~~~~ly~tD--~~~~~I~~~~k~  550 (619)
T 3s94_A          489 DEGKIYWG-DA--KTDKIEVMNTDGTGRRVLVED--KIPHI---FG---FTL-----LGDYVYWTD--WQRRSIERVHKR  550 (619)
T ss_dssp             TTTEEEEE-ET--TTTEEEEEESSSCCCEEEEEC--CCCSS---CC---EEE-----ETTEEEEEC--TTSSCEEEEESS
T ss_pred             cCCEEEEE-EC--CCCEEEEEecCCCceEEEecc--CCCCc---EE---EEE-----ECCEEEEee--cCCCeEEEEEcC
Confidence            766 5554 43  334788999876655545321  12222   11   223     345666542  344567777777


Q ss_pred             CCceEe
Q 008927          390 GHSLSL  395 (548)
Q Consensus       390 ~g~~~~  395 (548)
                      +|..+.
T Consensus       551 ~g~~~~  556 (619)
T 3s94_A          551 SAEREV  556 (619)
T ss_dssp             SCCEEE
T ss_pred             CCceEE
Confidence            664433

>1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A*

Probab=97.56  E-value=0.00025  Score=68.14  Aligned_cols=73  Identities=19%  Similarity=0.152  Sum_probs=52.2

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCc-----cChHHHHHHhc----CcEEEEe
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-----LNLSIQYWTSR----GWAFVDV  530 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~-----~~~~~Q~~asr----GyaVl~~  530 (548)
                      ..+.++|.+..+|.++..++|.|.+  ++  +++++|+||++||++.......     +....+.|+++    ||+|+.+
T Consensus        31 ~~~~~~~~s~~~~~~~~~~v~~P~~--~~--~~~~~P~vv~lHG~g~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~vv~~  106 (268)
T 1jjf_A           31 QVVNISYFSTATNSTRPARVYLPPG--YS--KDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTP  106 (268)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEECTT--CC--TTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEE
T ss_pred             eEEEEEEeccccCCceEEEEEeCCC--CC--CCCCccEEEEECCCCCCcchhhhccccHHHHHHHHHHcCCCCCEEEEEe
Confidence            4567788764368899999999965  43  2578999999999986532211     11235667776    5999999


Q ss_pred             CCCCCC
Q 008927          531 NYGGST  536 (548)
Q Consensus       531 NyRGSt  536 (548)
                      |+||..
T Consensus       107 d~~~~~  112 (268)
T 1jjf_A          107 NTNAAG  112 (268)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
Confidence            999863

>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2

Probab=97.56  E-value=0.00012  Score=69.83  Aligned_cols=69  Identities=17%  Similarity=0.189  Sum_probs=49.8

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcc-ccccCccChHHHHHHhcCcEEEEeCCCCCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPT-SEARGILNLSIQYWTSRGWAFVDVNYGGSTGLS  539 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~-~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG  539 (548)
                      +...++-. +|..+...+|.|.+        ++.|+||++|||.+ ......|....+.|+++||.|+.+||||+..+.
T Consensus        39 ~~~~i~~~-~~~~~~~~~~~p~~--------~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~~~~~~~  108 (262)
T 2pbl_A           39 ARLNLSYG-EGDRHKFDLFLPEG--------TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVR  108 (262)
T ss_dssp             EEEEEESS-SSTTCEEEEECCSS--------SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSC
T ss_pred             CccccccC-CCCCceEEEEccCC--------CCCCEEEEEcCcccccCChHHHHHHHHHHHhCCCEEEEeCCCCCCCCC
Confidence            33344433 55556677888842        35699999999863 234445677788999999999999999987654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.55  E-value=0.013  Score=55.56  Aligned_cols=146  Identities=14%  Similarity=0.134  Sum_probs=81.3

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccC
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~  235 (548)
                      .|++... ++.|++++.++  ...+.+....   ......+.++|+|+ | |+....       ...|++++..+..   
T Consensus        79 ~l~v~~~-~~~i~~~d~~~--~~~~~~~~~~---~~~p~~i~~~~~g~-l-~v~~~~-------~~~i~~~~~~~~~---  140 (270)
T 1rwi_B           79 TVYVTDF-NNRVVTLAAGS--NNQTVLPFDG---LNYPEGLAVDTQGA-V-YVADRG-------NNRVVKLAAGSKT---  140 (270)
T ss_dssp             CEEEEET-TTEEEEECTTC--SCCEECCCCS---CSSEEEEEECTTCC-E-EEEEGG-------GTEEEEECTTCCS---
T ss_pred             CEEEEcC-CCEEEEEeCCC--ceEeeeecCC---cCCCcceEECCCCC-E-EEEECC-------CCEEEEEECCCce---
Confidence            4777665 77999999886  4444443220   12344677899997 3 333322       2468888766554   


Q ss_pred             cEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcE
Q 008927          236 PKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL  314 (548)
Q Consensus       236 ~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L  314 (548)
                      ...... +........++|||+ | |+...      ....|++++.+. +.   ........ .  .....+.+++||.|
T Consensus       141 ~~~~~~~~~~~p~~i~~~~~g~-l-~v~~~------~~~~i~~~~~~~-~~---~~~~~~~~-~--~~p~~i~~d~~g~l  205 (270)
T 1rwi_B          141 QTVLPFTGLNDPDGVAVDNSGN-V-YVTDT------DNNRVVKLEAES-NN---QVVLPFTD-I--TAPWGIAVDEAGTV  205 (270)
T ss_dssp             CEECCCCSCCSCCCEEECTTCC-E-EEEEG------GGTEEEEECTTT-CC---EEECCCSS-C--CSEEEEEECTTCCE
T ss_pred             eEeeccccCCCceeEEEeCCCC-E-EEEEC------CCCEEEEEecCC-Cc---eEeecccC-C--CCceEEEECCCCCE
Confidence            333221 112234567899997 4 44422      135788888763 32   11111111 0  23455788999976


Q ss_pred             EEEEeCCCCeeeEEEEeccCCee
Q 008927          315 FFVTDRKNGFWNLHKWIESNNEV  337 (548)
Q Consensus       315 ~~~sd~~~g~~~Ly~~d~~~g~~  337 (548)
                      |+.... .  ..|++++.++...
T Consensus       206 ~v~~~~-~--~~v~~~~~~~~~~  225 (270)
T 1rwi_B          206 YVTEHN-T--NQVVKLLAGSTTS  225 (270)
T ss_dssp             EEEETT-T--SCEEEECTTCSCC
T ss_pred             EEEECC-C--CcEEEEcCCCCcc
Confidence            655432 2  3588888866543

>3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822}

Probab=97.55  E-value=7.5e-05  Score=73.35  Aligned_cols=64  Identities=17%  Similarity=0.219  Sum_probs=49.4

Q ss_pred             EEEee---ccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCcc-ChHHHHHHhcCcEEEEeCCCCC
Q 008927          463 LIEFP---TEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       463 ~i~~~---s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~-~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      .++|.   +. +|.++++++|.|.+  .    .++.|+||++||+.....  .| ....++++++||.|+.+|+|++
T Consensus        26 ~~~~~~~~~~-~~~~l~~~~~~P~~--~----~~~~p~vv~lHG~~~~~~--~~~~~~~~~l~~~g~~v~~~d~~~~   93 (304)
T 3d0k_A           26 AIPYLDDDRN-ADRPFTLNTYRPYG--Y----TPDRPVVVVQHGVLRNGA--DYRDFWIPAADRHKLLIVAPTFSDE   93 (304)
T ss_dssp             EEEECC---C-TTCCEEEEEEECTT--C----CTTSCEEEEECCTTCCHH--HHHHHTHHHHHHHTCEEEEEECCTT
T ss_pred             eEEecccCCC-CCceEEEEEEeCCC--C----CCCCcEEEEeCCCCCCHH--HHHHHHHHHHHHCCcEEEEeCCccc
Confidence            46676   65 88999999999964  2    235699999999987653  23 4456888999999999999964

>1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3

Probab=97.53  E-value=0.00014  Score=71.61  Aligned_cols=71  Identities=15%  Similarity=0.210  Sum_probs=51.3

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccCh---HHHHHHhcCcEEEEeCCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~---~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      ..+.++|.|...|.+++.+ ++|.        .+++|+||++||++.......|..   ..++++.+||+|+.||+++++
T Consensus         8 ~v~~~~~~S~~~~~~i~v~-~~p~--------~~~~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~p~~~~~~   78 (304)
T 1sfr_A            8 PVEYLQVPSPSMGRDIKVQ-FQSG--------GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSS   78 (304)
T ss_dssp             CCEEEEEEETTTTEEEEEE-EECC--------STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTC
T ss_pred             eEEEEEEECccCCCceEEE-ECCC--------CCCCCEEEEeCCCCCCCCcchhhcCCCHHHHHhcCCeEEEEECCCCCc
Confidence            4577888875257788887 5663        246899999999975333333332   247888999999999999987


Q ss_pred             CCC
Q 008927          537 GLS  539 (548)
Q Consensus       537 GyG  539 (548)
                      +|.
T Consensus        79 ~~~   81 (304)
T 1sfr_A           79 FYS   81 (304)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            763

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.52  E-value=0.023  Score=54.81  Aligned_cols=234  Identities=9%  Similarity=-0.026  Sum_probs=119.5

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      .|+++++.|+- ...++.|.+.++..  ++. +.+...    ....  ..++++++.++....+         ..+...+
T Consensus        74 ~~~~~~~~l~s-gs~Dg~v~iw~~~~--~~~~~~~~~h----~~~~--~~~~~~~~~l~s~~~~---------~~~~~~~  135 (318)
T 4ggc_A           74 AWIKEGNYLAV-GTSSAEVQLWDVQQ--QKRLRNMTSH----SARV--GSLSWNSYILSSGSRS---------GHIHHHD  135 (318)
T ss_dssp             EECTTSSEEEE-EETTSEEEEEETTT--TEEEEEEECC----SSCE--EEEEEETTEEEEEETT---------SEEEEEE
T ss_pred             EECCCCCEEEE-EECCCcEEEeecCC--ceeEEEecCc----cceE--EEeecCCCEEEEEecC---------CceEeee
Confidence            46666665554 44567777778876  433 333322    1122  2356667765543222         2455666


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCcee-e-eEEEcCCCCCcccCCcC
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY-K-RVCVAGFDPTIVESPTE  305 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~-~-~~~l~~~~~~~~~~~~~  305 (548)
                      ..++.. ....+...........++++|+.|+-...        ...|.+.|+.. ++.. . ........    ..+..
T Consensus       136 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--------d~~i~iwd~~~-~~~~~~~~~~~~~~~----~~v~~  201 (318)
T 4ggc_A          136 VRVAEH-HVATLSGHSQEVCGLRWAPDGRHLASGGN--------DNLVNVWPSAP-GEGGWVPLQTFTQHQ----GAVKA  201 (318)
T ss_dssp             TTSSSC-EEEEEECCSSCEEEEEECTTSSEEEEEET--------TSCEEEEESSC-BTTBSCCSEEECCCC----SCEEE
T ss_pred             cCCCce-eEEEEcCccCceEEEEEcCCCCEEEEEec--------CcceeEEECCC-CcccccceeeecccC----CceEE
Confidence            666540 02223333444667789999998874441        24578888874 3211 1 12222222    34667


Q ss_pred             ceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEE
Q 008927          306 PKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (548)
Q Consensus       306 ~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~  384 (548)
                      ..|+|++. ++++... .....|.+++...+...........         .....+.+   +++.++.... .....|+
T Consensus       202 ~~~~~~~~~~~~~~~~-~~~~~i~lwd~~~~~~~~~~~~~~~---------v~~~~~~~---~~~~~~~~sg-~~d~~i~  267 (318)
T 4ggc_A          202 VAWCPWQSNVLATGGG-TSDRHIRIWNVCSGACLSAVDAHSQ---------VCSILWSP---HYKELISGHG-FAQNQLV  267 (318)
T ss_dssp             EEECTTSTTEEEEEEC-TTTCEEEEEETTTCCEEEEEECSSC---------EEEEEEET---TTTEEEEEEC-TTTCCEE
T ss_pred             EEecCCCCcEEEEEec-CCCCEEEEEecccccccccccceee---------eeeeeecc---cccceEEEEE-cCCCEEE
Confidence            78999887 6655432 2223455666655544332211111         11123433   5666654432 2234577


Q ss_pred             EEECCCCceE-eecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 008927          385 ILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLD  432 (548)
Q Consensus       385 ~~dl~~g~~~-~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~  432 (548)
                      ++|+.+++.. .+......+..+  +++++.|+ .++.   -..|.++|+.
T Consensus       268 iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~-S~s~---D~~v~iWd~~  314 (318)
T 4ggc_A          268 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA-SAAA---DETLRLWRCF  314 (318)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECTTSSCEE-EEET---TTEEEEECCS
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE-EEec---CCeEEEEECC
Confidence            7888887643 444333445554  56766543 4432   2456666654

>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A

Probab=97.51  E-value=8.8e-05  Score=76.71  Aligned_cols=66  Identities=15%  Similarity=0.158  Sum_probs=50.7

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      .+.++++.  +|.++++++|.|.+       +++.|+||++||+..... ..+....+.|+++||.|+.+|+||..
T Consensus       168 ~~~v~i~~--~g~~l~~~~~~P~~-------~~~~P~vv~~hG~~~~~~-~~~~~~~~~l~~~G~~V~~~D~~G~G  233 (415)
T 3mve_A          168 IKQLEIPF--EKGKITAHLHLTNT-------DKPHPVVIVSAGLDSLQT-DMWRLFRDHLAKHDIAMLTVDMPSVG  233 (415)
T ss_dssp             EEEEEEEC--SSSEEEEEEEESCS-------SSCEEEEEEECCTTSCGG-GGHHHHHHTTGGGTCEEEEECCTTSG
T ss_pred             eEEEEEEE--CCEEEEEEEEecCC-------CCCCCEEEEECCCCccHH-HHHHHHHHHHHhCCCEEEEECCCCCC
Confidence            56788887  68899999999953       346799999999864432 12334457889999999999999853

>3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens}

Probab=97.51  E-value=0.00015  Score=72.01  Aligned_cols=60  Identities=15%  Similarity=0.221  Sum_probs=50.2

Q ss_pred             EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       465 ~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      .+.+. ||.+++++++.|.+        ++.|+||++||++....  .|....+.|+++||.|+.+|+||.
T Consensus        39 ~~~~~-dg~~l~~~~~~p~~--------~~~p~vv~~HG~~~~~~--~~~~~~~~l~~~g~~vi~~D~~G~   98 (342)
T 3hju_A           39 HLVNA-DGQYLFCRYWKPTG--------TPKALIFVSHGAGEHSG--RYEELARMLMGLDLLVFAHDHVGH   98 (342)
T ss_dssp             EEECT-TSCEEEEEEECCSS--------CCSEEEEEECCTTCCGG--GGHHHHHHHHTTTEEEEEECCTTS
T ss_pred             eEEcc-CCeEEEEEEeCCCC--------CCCcEEEEECCCCcccc--hHHHHHHHHHhCCCeEEEEcCCCC
Confidence            67777 99999999999853        34699999999986554  566778899999999999999984

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.50  E-value=0.0083  Score=68.25  Aligned_cols=198  Identities=10%  Similarity=-0.062  Sum_probs=112.1

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCC
Q 008927          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (548)
Q Consensus       193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~  272 (548)
                      +..++|+|||+.|+.-..+         ..|.+++..+++   ..........+....|+| |++|+-.+.        .
T Consensus        20 V~~lafspdg~~lAsgs~D---------g~I~lw~~~~~~---~~~~~~~~~~V~~l~fsp-g~~L~S~s~--------D   78 (902)
T 2oaj_A           20 PIAAAFDFTQNLLAIATVT---------GEVHIYGQQQVE---VVIKLEDRSAIKEMRFVK-GIYLVVINA--------K   78 (902)
T ss_dssp             EEEEEEETTTTEEEEEETT---------SEEEEECSTTCE---EEEECSSCCCEEEEEEET-TTEEEEEET--------T
T ss_pred             cEEEEECCCCCEEEEEeCC---------CEEEEEeCCCcE---EEEEcCCCCCEEEEEEcC-CCEEEEEEC--------c
Confidence            4567899999987765433         367788887765   333333344567788999 887764441        3


Q ss_pred             ceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecc-c-----ccc
Q 008927          273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-L-----DAE  346 (548)
Q Consensus       273 ~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~-~-----~~d  346 (548)
                      ..|.+.|++. ++.  ...+.. .    ..+....|+|||+++++... +|  .|.++|+++++.....- .     ...
T Consensus        79 ~~v~lWd~~~-~~~--~~~~~~-~----~~V~~v~~sp~g~~l~sgs~-dg--~V~lwd~~~~~~~~~~i~~~~~~~~~~  147 (902)
T 2oaj_A           79 DTVYVLSLYS-QKV--LTTVFV-P----GKITSIDTDASLDWMLIGLQ-NG--SMIVYDIDRDQLSSFKLDNLQKSSFFP  147 (902)
T ss_dssp             CEEEEEETTT-CSE--EEEEEC-S----SCEEEEECCTTCSEEEEEET-TS--CEEEEETTTTEEEEEEECCHHHHHTCS
T ss_pred             CeEEEEECCC-CcE--EEEEcC-C----CCEEEEEECCCCCEEEEEcC-CC--cEEEEECCCCccccceecccccccccc
Confidence            5688889874 442  222332 2    45778899999996566554 44  46667777776532110 0     000


Q ss_pred             cCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eecCC------------------CceeEee-
Q 008927          347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIP------------------FTDIDNI-  406 (548)
Q Consensus       347 ~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~~~------------------~~~~~~~-  406 (548)
                      .+...   ......|.|   ++..++++...++  .+ +.|+.+++.. .+...                  ...+..+ 
T Consensus       148 ~~h~~---~V~sl~~sp---~~~~~l~~g~~dg--~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~  218 (902)
T 2oaj_A          148 AARLS---PIVSIQWNP---RDIGTVLISYEYV--TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL  218 (902)
T ss_dssp             SSCCC---CCCEEEEET---TEEEEEEEECSSC--EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred             ccCCC---CeEEEEEcc---CCCCEEEEEeCCC--cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEE
Confidence            01111   122355664   4444555554444  35 7788877643 33211                  0224433 


Q ss_pred             -eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          407 -TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       407 -s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                       ++++..|+ .++.   -..|.++|+.+++
T Consensus       219 fspdg~~la-sgs~---Dg~i~lWd~~~g~  244 (902)
T 2oaj_A          219 YHPNSLHII-TIHE---DNSLVFWDANSGH  244 (902)
T ss_dssp             ECTTSSEEE-EEET---TCCEEEEETTTCC
T ss_pred             EcCCCCEEE-EEEC---CCeEEEEECCCCc
Confidence             67776554 3332   2468888987765

>3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A*

Probab=97.50  E-value=0.00017  Score=69.40  Aligned_cols=60  Identities=15%  Similarity=0.226  Sum_probs=49.9

Q ss_pred             EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       465 ~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      .+.+. ||.+++.+++.|.+        ++.|+||++||.+....  .|....+.|+++||.|+.+|+||-
T Consensus        21 ~~~~~-~g~~l~~~~~~~~~--------~~~~~vv~~hG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~G~   80 (303)
T 3pe6_A           21 HLVNA-DGQYLFCRYWAPTG--------TPKALIFVSHGAGEHSG--RYEELARMLMGLDLLVFAHDHVGH   80 (303)
T ss_dssp             EEECT-TSCEEEEEEECCSS--------CCSEEEEEECCTTCCGG--GGHHHHHHHHHTTEEEEEECCTTS
T ss_pred             eEecC-CCeEEEEEEeccCC--------CCCeEEEEECCCCchhh--HHHHHHHHHHhCCCcEEEeCCCCC
Confidence            56776 99999999999853        34699999999876544  566778899999999999999985

>3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A

Probab=97.49  E-value=0.00011  Score=70.96  Aligned_cols=70  Identities=14%  Similarity=0.037  Sum_probs=50.7

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCc-cChHHHHHHhcCcEEEEeCCCC
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~-~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      .+.+++.+..+|.++..++|.|.+  ++  +++++|+||++||++....... .....++++.+||+|+.+|.||
T Consensus        17 ~~~~~~~s~~~g~~~~~~v~~P~~--~~--~~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~pd~~~   87 (280)
T 3i6y_A           17 HKQYSHVSNTLNCAMRFAIYLPPQ--AS--TGAKVPVLYWLSGLTCSDENFMQKAGAQRLAAELGIAIVAPDTSP   87 (280)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECGG--GG--TTCCEEEEEEECCTTCCSSHHHHHSCCHHHHHHHTCEEEEECSSC
T ss_pred             EEEEEEeccccCCeeEEEEEeCCC--CC--CCCCccEEEEecCCCCChhHHhhcccHHHHHhhCCeEEEEeCCcc
Confidence            456677664378999999999965  43  2578999999999976543211 1224577888999999999763

>1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3

Probab=97.49  E-value=0.0002  Score=69.69  Aligned_cols=68  Identities=10%  Similarity=0.025  Sum_probs=50.3

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccC---hHHHHHHhcCcEEEEeCCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN---LSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~---~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      ..+.++|+|..+|.++..+ |.|.        +  +|+||++||++.......|.   ...++++++||+|+.||+++++
T Consensus        10 ~~~~~~~~S~~~~~~~~~~-~~P~--------~--~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~pd~~~~~   78 (280)
T 1r88_A           10 PYENLMVPSPSMGRDIPVA-FLAG--------G--PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYS   78 (280)
T ss_dssp             CCEEEEEEETTTTEEEEEE-EECC--------S--SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTTS
T ss_pred             CEEEEEEECcccCCcceEE-EeCC--------C--CCEEEEECCCCCCCChhhhhhcccHHHHHhcCCeEEEEECCCCCC
Confidence            5678888875368889988 6773        2  38999999996433222332   2357889999999999999987


Q ss_pred             CC
Q 008927          537 GL  538 (548)
Q Consensus       537 Gy  538 (548)
                      +|
T Consensus        79 ~~   80 (280)
T 1r88_A           79 MY   80 (280)
T ss_dssp             TT
T ss_pred             cc
Confidence            76

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.48  E-value=0.0026  Score=67.57  Aligned_cols=198  Identities=8%  Similarity=0.058  Sum_probs=115.5

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L  167 (548)
                      ..+..+++|| |..++-...    +|...||..  .  +....+. ....+.++  .+-.-+|+|||+.|+-.. .++.|
T Consensus        86 ~~V~~vawSPdG~~LAs~s~----dg~V~iwd~--~--~~l~~l~-~~~~~~~~--sv~svafSPDG~~LAsgs-~DGtV  153 (588)
T 2j04_A           86 CYPRVCKPSPIDDWMAVLSN----NGNVSVFKD--N--KMLTNLD-SKGNLSSR--TYHCFEWNPIESSIVVGN-EDGEL  153 (588)
T ss_dssp             CCEEEEEECSSSSCEEEEET----TSCEEEEET--T--EEEEECC-CSSCSTTT--CEEEEEECSSSSCEEEEE-TTSEE
T ss_pred             CcEEEEEECCCCCEEEEEeC----CCcEEEEeC--C--ceeeecc-CCCccccc--cEEEEEEcCCCCEEEEEc-CCCEE
Confidence            5677889999 999987653    477677742  1  1111122 11110010  111347889888777765 56777


Q ss_pred             EEEeCCCCCCCc--------eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccC-cEE
Q 008927          168 YKHSIDSKDSSP--------LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE-PKV  238 (548)
Q Consensus       168 y~~~~~~~~~~~--------~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~-~~~  238 (548)
                      -+.++.+  +..        ..+.....+....+...+|||||  |+....+         +.++++|+.++...+ .+.
T Consensus       154 kIWd~~~--~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D---------~tVrlWd~~~~~~~~~~~t  220 (588)
T 2j04_A          154 QFFSIRK--NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSN---------NSVFSMTVSASSHQPVSRM  220 (588)
T ss_dssp             EEEECCC--CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETT---------CCEEEECCCSSSSCCCEEE
T ss_pred             EEEECCC--CccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCC---------CeEEEEECCCCccccceee
Confidence            7777776  331        23321110011245667899999  5554443         357888888876210 123


Q ss_pred             eeecC-CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE--CcCCcEE
Q 008927          239 LVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW--SSKGELF  315 (548)
Q Consensus       239 L~~~~-~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w--spDG~L~  315 (548)
                      |..+. ..+...+||  |+.|| ++.        ...|.+.++.+ +..  .....+..    ..+....|  +|||+.+
T Consensus       221 L~~~h~~~V~svaFs--g~~LA-Sa~--------~~tIkLWd~~~-~~~--~~~~~gh~----~~V~~va~~~s~d~~~L  282 (588)
T 2j04_A          221 IQNASRRKITDLKIV--DYKVV-LTC--------PGYVHKIDLKN-YSI--SSLKTGSL----ENFHIIPLNHEKESTIL  282 (588)
T ss_dssp             EECCCSSCCCCEEEE--TTEEE-EEC--------SSEEEEEETTT-TEE--EEEECSCC----SCCCEEEETTCSSCEEE
T ss_pred             ecccccCcEEEEEEE--CCEEE-EEe--------CCeEEEEECCC-CeE--EEEEcCCC----ceEEEEEeeeCCCCCEE
Confidence            53333 456677898  67777 331        24789999873 431  12222433    56778899  9999877


Q ss_pred             EEEeCCCCeeeEEEEe
Q 008927          316 FVTDRKNGFWNLHKWI  331 (548)
Q Consensus       316 ~~sd~~~g~~~Ly~~d  331 (548)
                      .++.. +|. .||..+
T Consensus       283 a~a~e-dG~-klw~~d  296 (588)
T 2j04_A          283 LMSNK-TSY-KVLLED  296 (588)
T ss_dssp             EECSS-CEE-EEEESS
T ss_pred             EEEcC-CCC-EEEeec
Confidence            77776 677 787765

>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728}

Probab=97.48  E-value=0.00035  Score=63.48  Aligned_cols=55  Identities=11%  Similarity=0.167  Sum_probs=45.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccCh--HHHHHHhcCcEEEEeCCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL--SIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~--~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      ||.++++++|.|.+         +.|+||++||++....  .|..  ..+.|+++||.|+.+|+||..
T Consensus        12 ~g~~l~~~~~~~~~---------~~~~vv~~hG~~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g   68 (207)
T 3bdi_A           12 NGTRVFQRKMVTDS---------NRRSIALFHGYSFTSM--DWDKADLFNNYSKIGYNVYAPDYPGFG   68 (207)
T ss_dssp             TTEEEEEEEECCTT---------CCEEEEEECCTTCCGG--GGGGGTHHHHHHTTTEEEEEECCTTST
T ss_pred             CCcEEEEEEEeccC---------CCCeEEEECCCCCCcc--ccchHHHHHHHHhCCCeEEEEcCCccc
Confidence            89999999999842         3589999999986543  4556  788999999999999999743

>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A

Probab=97.48  E-value=2.6e-05  Score=82.50  Aligned_cols=62  Identities=24%  Similarity=0.387  Sum_probs=43.7

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccC-ccChHHHHHHhcC-cEEEEeCCC-CCCCCCh
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRG-WAFVDVNYG-GSTGLSS  540 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~-~~~~~~Q~~asrG-yaVl~~NyR-GStGyG~  540 (548)
                      |.  ++..+|.|.+.      .+++|+||++|||+...-.. .+....+.|+++| |+|+.+||| |+.||+.
T Consensus        81 dc--L~l~v~~P~~~------~~~~PviV~iHGGg~~~g~~~~~~~~~~~la~~g~~vvv~~nYRlg~~Gf~~  145 (489)
T 1qe3_A           81 DC--LYVNVFAPDTP------SQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLH  145 (489)
T ss_dssp             CC--CEEEEEEECSS------CCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCC
T ss_pred             CC--CEEEEEeCCCC------CCCCCEEEEECCCccccCCCCCcccCHHHHHhcCCEEEEecCccCcccccCc
Confidence            55  55567778541      23489999999999654322 2223467888886 999999999 7777764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.47  E-value=0.013  Score=59.94  Aligned_cols=158  Identities=8%  Similarity=0.062  Sum_probs=85.1

Q ss_pred             eeEE-ECCEEEEEeCCCCeEEEEeCCCC-CCC-ce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 008927          149 AFRI-FGDTVIFSNYKDQRLYKHSIDSK-DSS-PL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (548)
Q Consensus       149 ~~~~-~~~~i~F~~~~~~~Ly~~~~~~~-~~~-~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~  224 (548)
                      +|++ ++..|+-. ..++.|.+.++... .+. .+ .++..   ....+..+.|+|+++.|+....+         ..|.
T Consensus        70 ~~s~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~d---------g~i~  136 (437)
T 3gre_A           70 AVSPGETPYLITG-SDQGVIKIWNLKEIIVGEVYSSSLTYD---CSSTVTQITMIPNFDAFAVSSKD---------GQII  136 (437)
T ss_dssp             EEECSSSCEEEEE-ETTSEEEEEEHHHHHTTCCCSCSEEEE---CSSCEEEEEECTTSSEEEEEETT---------SEEE
T ss_pred             EECCCCCCEEEEe-cCCceEEEeECcccccCcccceeeecc---CCCCEEEEEEeCCCCEEEEEeCC---------CEEE
Confidence            5677 55555544 45676666665420 011 11 11101   01246678899999987765443         2455


Q ss_pred             EEECC---CCCccCcEEeee-------------cCCcee--eeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCce
Q 008927          225 AIALN---GQNIQEPKVLVS-------------GSDFYA--FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV  286 (548)
Q Consensus       225 ~idl~---~g~~~~~~~L~~-------------~~~~~~--~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~  286 (548)
                      ++|++   +++   ......             ......  ...++|||+.|+....        ...|.+.|+.. ++ 
T Consensus       137 vwd~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------d~~i~iwd~~~-~~-  203 (437)
T 3gre_A          137 VLKVNHYQQES---EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN--------LSRVIIFDIRT-LE-  203 (437)
T ss_dssp             EEEEEEEEETT---EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET--------TSEEEEEETTT-CC-
T ss_pred             EEEeccccCCc---eeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC--------CCeEEEEeCCC-Ce-
Confidence            55653   333   221111             111221  2237788988875541        35799999974 43 


Q ss_pred             eeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeE
Q 008927          287 YKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL  338 (548)
Q Consensus       287 ~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~  338 (548)
                       ....+......  ..+....|+|||++++.... +|  .|..+|+.+++..
T Consensus       204 -~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~  249 (437)
T 3gre_A          204 -RLQIIENSPRH--GAVSSICIDEECCVLILGTT-RG--IIDIWDIRFNVLI  249 (437)
T ss_dssp             -EEEEEECCGGG--CCEEEEEECTTSCEEEEEET-TS--CEEEEETTTTEEE
T ss_pred             -eeEEEccCCCC--CceEEEEECCCCCEEEEEcC-CC--eEEEEEcCCccEE
Confidence             23334331001  45778899999996665544 44  4666777676653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.46  E-value=0.051  Score=51.82  Aligned_cols=226  Identities=12%  Similarity=0.087  Sum_probs=118.6

Q ss_pred             CEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCcc
Q 008927          155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ  234 (548)
Q Consensus       155 ~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~  234 (548)
                      +.|++....++.|++++.++   +.+.+....  .......+.++|+|+. ++. ...       ...|+++|. +++  
T Consensus        68 g~l~v~~~~~~~i~~~~~~g---~~~~~~~~~--~~~~~~~i~~~~~g~l-~v~-~~~-------~~~i~~~d~-~g~--  130 (299)
T 2z2n_A           68 GEVWFTENAANKIGRITKKG---IIKEYTLPN--PDSAPYGITEGPNGDI-WFT-EMN-------GNRIGRITD-DGK--  130 (299)
T ss_dssp             SCEEEEETTTTEEEEECTTS---CEEEEECSS--TTCCEEEEEECTTSCE-EEE-ETT-------TTEEEEECT-TCC--
T ss_pred             CCEEEeCCCCCeEEEECCCC---cEEEEeCCC--cCCCceeeEECCCCCE-EEE-ecC-------CceEEEECC-CCC--
Confidence            46777776677899999864   333332110  0123445678898863 332 321       146999998 555  


Q ss_pred             CcEEeee--cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCC
Q 008927          235 EPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (548)
Q Consensus       235 ~~~~L~~--~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG  312 (548)
                       ...+..  .........++|||+ | |+...      ....|++++.  ++++.. ..+....    .......+++||
T Consensus       131 -~~~~~~~~~~~~~~~i~~~~~g~-l-~v~~~------~~~~i~~~~~--~g~~~~-~~~~~~~----~~~~~i~~~~~g  194 (299)
T 2z2n_A          131 -IREYELPNKGSYPSFITLGSDNA-L-WFTEN------QNNAIGRITE--SGDITE-FKIPTPA----SGPVGITKGNDD  194 (299)
T ss_dssp             -EEEEECSSTTCCEEEEEECTTSC-E-EEEET------TTTEEEEECT--TCCEEE-EECSSTT----CCEEEEEECTTS
T ss_pred             -EEEecCCCCCCCCceEEEcCCCC-E-EEEeC------CCCEEEEEcC--CCcEEE-eeCCCCC----CcceeEEECCCC
Confidence             444322  122345667899996 4 34321      2357888887  354321 1122211    234557788999


Q ss_pred             cEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCc
Q 008927          313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS  392 (548)
Q Consensus       313 ~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~  392 (548)
                      +||+.... .  ..|+++++ +++.+.+... .....|      ....+.+   + +.|++..  .+...|+++|+ +++
T Consensus       195 ~l~v~~~~-~--~~i~~~~~-~g~~~~~~~~-~~~~~~------~~i~~~~---~-g~l~v~~--~~~~~i~~~d~-~g~  256 (299)
T 2z2n_A          195 ALWFVEII-G--NKIGRITT-SGEITEFKIP-TPNARP------HAITAGA---G-IDLWFTE--WGANKIGRLTS-NNI  256 (299)
T ss_dssp             SEEEEETT-T--TEEEEECT-TCCEEEEECS-STTCCE------EEEEECS---T-TCEEEEE--TTTTEEEEEET-TTE
T ss_pred             CEEEEccC-C--ceEEEECC-CCcEEEEECC-CCCCCc------eeEEECC---C-CCEEEec--cCCceEEEECC-CCc
Confidence            87665432 2  36889998 6765544211 011111      1123331   3 3465443  23346888898 566


Q ss_pred             eEeecCC--CceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          393 LSLLDIP--FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       393 ~~~l~~~--~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      .+.+..+  ......+...++.+++...    ...|+++++++++
T Consensus       257 ~~~~~~~~~~~~~~~i~~~~g~l~v~~~----~~~l~~~~~~~~~  297 (299)
T 2z2n_A          257 IEEYPIQIKSAEPHGICFDGETIWFAME----CDKIGKLTLIKDN  297 (299)
T ss_dssp             EEEEECSSSSCCEEEEEECSSCEEEEET----TTEEEEEEEC---
T ss_pred             eEEEeCCCCCCccceEEecCCCEEEEec----CCcEEEEEcCccc
Confidence            6555332  2233333225566666542    2578888876543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.45  E-value=0.0057  Score=60.98  Aligned_cols=220  Identities=9%  Similarity=-0.034  Sum_probs=112.4

Q ss_pred             ccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCC-eeeEEEC-CEEEEEeCC----
Q 008927           90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG-GAFRIFG-DTVIFSNYK----  163 (548)
Q Consensus        90 ~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg-~~~~~~~-~~i~F~~~~----  163 (548)
                      .+..+.++|.+++|....+-. .|...|+.++ +  +..+.+..........   ... .....+. ++|++.+..    
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~-~~~~~l~~~~-~--g~~~~~p~~~~~~~~~---~~~p~gv~~d~~g~L~v~D~g~~~~   90 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFY-QPEMQVAELT-Q--DGLIPFPPQSGNAIIT---FDTVLGIKSDGNGIVWMLDNGNQSK   90 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGG-CCSCSEEEEE-T--TEEEESCCCCSSCCCC---CSCEEEEEECSSSEEEEEECHHHHT
T ss_pred             CcceEEECCCCCEEEEeCCCC-CCceEEEEEC-C--CCeecCCCcccCcccc---eeEeeEEEEcCCCcEEEEcCCCCcC
Confidence            566788888567765543322 2324566664 3  3333221100000000   000 1223343 567777643    


Q ss_pred             -CCeEEEEeCCCCCCC-ceecCCC-C-CCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEe
Q 008927          164 -DQRLYKHSIDSKDSS-PLPITPD-Y-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL  239 (548)
Q Consensus       164 -~~~Ly~~~~~~~~~~-~~~lT~~-~-~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L  239 (548)
                       ..+|+++++++  ++ .+.+... . ........++.++|++..+++. ....    .....|+++|+.+++   ..++
T Consensus        91 ~~~~i~~~d~~t--g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvt-d~~~----~~~~~i~v~d~~~g~---~~r~  160 (343)
T 2qe8_A           91 SVPKLVAWDTLN--NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYIS-DPAP----DDKAALIRVDLQTGL---AARV  160 (343)
T ss_dssp             SCCEEEEEETTT--TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEE-ECCS----GGGCEEEEEETTTCC---EEEE
T ss_pred             CCCeEEEEECCC--CeEEEEEECChhhcccccccceEEEecCCCEEEEE-cCcc----CCCCeEEEEECCCCC---EEEE
Confidence             46899999876  44 3333211 0 0011234678899877765443 3210    013579999998876   4443


Q ss_pred             eec-----C-------------------------CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC--CCcee
Q 008927          240 VSG-----S-------------------------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGDVY  287 (548)
Q Consensus       240 ~~~-----~-------------------------~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~--~g~~~  287 (548)
                      ..+     .                         .......|||||+.|++...       ....||.++.+.  ++.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~-------~~~~l~~~~~~~~~~~~~~  233 (343)
T 2qe8_A          161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM-------HSTSMYRIKSADLSNLQLT  233 (343)
T ss_dssp             CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES-------SCSEEEEEEHHHHTCTTCC
T ss_pred             ecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC-------CCCeEEEEEHHHhcCCCCC
Confidence            211     0                         01234679999998876542       245788887531  11111


Q ss_pred             e------eEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeec
Q 008927          288 K------RVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (548)
Q Consensus       288 ~------~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~  341 (548)
                      +      ...+ +..    .......+++||.||+....   ...|++++.++|+.+.+.
T Consensus       234 ~~~~~~~~~~~-g~~----g~pdgia~d~~G~l~va~~~---~~~V~~~d~~~G~~~~~~  285 (343)
T 2qe8_A          234 DAELGSKIERY-SEK----PICDGISIDKDHNIYVGDLA---HSAIGVITSADRAYKLLV  285 (343)
T ss_dssp             HHHHHTTCEEE-EEC----CSCSCEEECTTCCEEEEEGG---GTEEEEEETTTTEEEEEE
T ss_pred             hhhhhcceEec-ccC----CCCceEEECCCCCEEEEccC---CCeEEEEECCCCCEEEEE
Confidence            1      0111 111    22345788999876655322   246889998567665554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.45  E-value=0.028  Score=53.76  Aligned_cols=154  Identities=13%  Similarity=0.117  Sum_probs=85.4

Q ss_pred             CCEEEEEeCC-CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCC
Q 008927          154 GDTVIFSNYK-DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (548)
Q Consensus       154 ~~~i~F~~~~-~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~  232 (548)
                      ++.|++.... ++.|++++.++  ...+.+....   ......+.++|+|+ |++ ....       ...|+++|.++..
T Consensus        88 ~g~l~v~~~~~~~~i~~~d~~g--~~~~~~~~~~---~~~~~~i~~~~~g~-l~v-~~~~-------~~~i~~~~~~g~~  153 (286)
T 1q7f_A           88 SGDIIVTERSPTHQIQIYNQYG--QFVRKFGATI---LQHPRGVTVDNKGR-IIV-VECK-------VMRVIIFDQNGNV  153 (286)
T ss_dssp             TTEEEEEECGGGCEEEEECTTS--CEEEEECTTT---CSCEEEEEECTTSC-EEE-EETT-------TTEEEEECTTSCE
T ss_pred             CCeEEEEcCCCCCEEEEECCCC--cEEEEecCcc---CCCceEEEEeCCCC-EEE-EECC-------CCEEEEEcCCCCE
Confidence            4577777643 67899998664  3333443211   12344677999997 333 2321       2479999976543


Q ss_pred             ccCcEEeeec--CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc
Q 008927          233 IQEPKVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS  310 (548)
Q Consensus       233 ~~~~~~L~~~--~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp  310 (548)
                         ...+...  ........++|||+ | |++..      ....|++++.+  |+  ....+.... . ......+.+++
T Consensus       154 ---~~~~~~~~~~~~p~~i~~~~~g~-l-~v~~~------~~~~i~~~~~~--g~--~~~~~~~~g-~-~~~p~~i~~d~  216 (286)
T 1q7f_A          154 ---LHKFGCSKHLEFPNGVVVNDKQE-I-FISDN------RAHCVKVFNYE--GQ--YLRQIGGEG-I-TNYPIGVGINS  216 (286)
T ss_dssp             ---EEEEECTTTCSSEEEEEECSSSE-E-EEEEG------GGTEEEEEETT--CC--EEEEESCTT-T-SCSEEEEEECT
T ss_pred             ---EEEeCCCCccCCcEEEEECCCCC-E-EEEEC------CCCEEEEEcCC--CC--EEEEEccCC-c-cCCCcEEEECC
Confidence               3344321  12345668999987 4 44422      14579998875  33  123333211 0 02345678899


Q ss_pred             CCcEEEEEeCCCCeeeEEEEeccCCeeEee
Q 008927          311 KGELFFVTDRKNGFWNLHKWIESNNEVLAI  340 (548)
Q Consensus       311 DG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l  340 (548)
                      ||+||+.... . ...|.+++.++...+.+
T Consensus       217 ~G~l~v~~~~-~-~~~i~~~~~~g~~~~~~  244 (286)
T 1q7f_A          217 NGEILIADNH-N-NFNLTIFTQDGQLISAL  244 (286)
T ss_dssp             TCCEEEEECS-S-SCEEEEECTTSCEEEEE
T ss_pred             CCCEEEEeCC-C-CEEEEEECCCCCEEEEE
Confidence            9986655432 2 12688888755444444

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.43  E-value=0.046  Score=52.00  Aligned_cols=208  Identities=11%  Similarity=0.111  Sum_probs=111.1

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee-ecCCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (548)
Q Consensus       192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~-~~~~~~~~p~~SPDGk~La~~~~~~~~~p~  270 (548)
                      ....+.|+|++++|++|...        ...|+.+|+. ++.  .+.+. .+..-+...++.++|+ ++ ++...     
T Consensus        28 ~lSGla~~~~~~~L~aV~d~--------~~~I~~ld~~-g~v--~~~i~l~g~~D~EGIa~~~~g~-~~-vs~E~-----   89 (255)
T 3qqz_A           28 NISSLTWSAQSNTLFSTINK--------PAAIVEMTTN-GDL--IRTIPLDFVKDLETIEYIGDNQ-FV-ISDER-----   89 (255)
T ss_dssp             CEEEEEEETTTTEEEEEEET--------TEEEEEEETT-CCE--EEEEECSSCSSEEEEEECSTTE-EE-EEETT-----
T ss_pred             CcceeEEeCCCCEEEEEECC--------CCeEEEEeCC-CCE--EEEEecCCCCChHHeEEeCCCE-EE-EEECC-----
Confidence            47788999999998887543        2579999998 542  44443 2222355667788875 33 44222     


Q ss_pred             CCceEEEEEecCCCceeeeEEEc-C-CCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEe--ccCCeeEeeccccc
Q 008927          271 DKAELWVGYISENGDVYKRVCVA-G-FDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWI--ESNNEVLAIYSLDA  345 (548)
Q Consensus       271 ~~~~L~v~~~~~~g~~~~~~~l~-~-~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d--~~~g~~~~l~~~~~  345 (548)
                       ...|+++++..++.+....... . ...........++|+|+++ ||...++  ....||.++  +.+...+.+. .. 
T Consensus        90 -~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~--~p~~i~~~~g~~~~~~l~i~~-~~-  164 (255)
T 3qqz_A           90 -DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK--NPIEVYKVNGLLSSNELHISK-DK-  164 (255)
T ss_dssp             -TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES--SSEEEEEEESTTCSSCCEEEE-CH-
T ss_pred             -CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc--CCceEEEEcccccCCceeeec-ch-
Confidence             3579999988655421112121 1 0000013456789999987 8777776  335788887  2222222221 00 


Q ss_pred             ccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCC--C-------ceeEeeeec-CCEEEE
Q 008927          346 EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP--F-------TDIDNITLG-NDCLFV  415 (548)
Q Consensus       346 d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~--~-------~~~~~~s~d-~~~l~~  415 (548)
                      .+.......+.+..++.|   ..+.+|+...  ....|..+|.++.-+..+...  .       ..-.+++-| ++.+|+
T Consensus       165 ~~~~~~~~~d~S~l~~dp---~tg~lliLS~--~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI  239 (255)
T 3qqz_A          165 ALQRQFTLDDVSGAEFNQ---QKNTLLVLSH--ESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI  239 (255)
T ss_dssp             HHHHTCCSSCCCEEEEET---TTTEEEEEET--TTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE
T ss_pred             hhccccccCCceeEEEcC---CCCeEEEEEC--CCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE
Confidence            000001112334445543   5667776653  345678888765433333322  1       123455322 345665


Q ss_pred             EEecCCCCCeEEEEEc
Q 008927          416 EGASGVEPSSVAKVTL  431 (548)
Q Consensus       416 ~~ss~~~p~~l~~~d~  431 (548)
                      + +.   |..+|++..
T Consensus       240 v-sE---~n~~y~f~~  251 (255)
T 3qqz_A          240 V-SE---PNRFYRFTP  251 (255)
T ss_dssp             E-ET---TTEEEEEEC
T ss_pred             E-cC---CceEEEEEe
Confidence            5 43   458888864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.43  E-value=0.017  Score=59.66  Aligned_cols=187  Identities=11%  Similarity=0.157  Sum_probs=112.1

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      .+++++..|+... .++.|.+.++..  ++. ..+...    ........|+|||+.|+....+         ..|.++|
T Consensus       275 ~~~~~~~~l~~~~-~d~~i~vwd~~~--~~~~~~~~~~----~~~v~~~~~~~~~~~l~sg~~d---------g~i~vwd  338 (464)
T 3v7d_B          275 TVSGHGNIVVSGS-YDNTLIVWDVAQ--MKCLYILSGH----TDRIYSTIYDHERKRCISASMD---------TTIRIWD  338 (464)
T ss_dssp             EEEEETTEEEEEE-TTSCEEEEETTT--TEEEEEECCC----SSCEEEEEEETTTTEEEEEETT---------SCEEEEE
T ss_pred             EEcCCCCEEEEEe-CCCeEEEEECCC--CcEEEEecCC----CCCEEEEEEcCCCCEEEEEeCC---------CcEEEEE
Confidence            3556676665544 567888889875  443 233322    2346677899999987765433         3588889


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      +.+++.  ...+...........|+  +++|+-..        ....|.+.++.. +.  ....... .    .......
T Consensus       339 ~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~s~s--------~dg~v~vwd~~~-~~--~~~~~~~-~----~~~~~~~  398 (464)
T 3v7d_B          339 LENGEL--MYTLQGHTALVGLLRLS--DKFLVSAA--------ADGSIRGWDAND-YS--RKFSYHH-T----NLSAITT  398 (464)
T ss_dssp             TTTTEE--EEEECCCSSCEEEEEEC--SSEEEEEE--------TTSEEEEEETTT-CC--EEEEEEC-T----TCCCEEE
T ss_pred             CCCCcE--EEEEeCCCCcEEEEEEc--CCEEEEEe--------CCCcEEEEECCC-Cc--eeeeecC-C----CCccEEE
Confidence            988861  23333333445556666  57666443        135688889874 33  1222222 1    3455678


Q ss_pred             ECcCCcEEEEEeCCCCeeeEEEEeccCCeeEee-cccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAI-YSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (548)
Q Consensus       308 wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l-~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~  386 (548)
                      |++||++++....  |  .|..+|+++++.... ...   ...+.+     ...+     +++.+++....++...++.+
T Consensus       399 ~~~~~~~l~~~~d--g--~i~iwd~~~g~~~~~~~~~---~~~~v~-----~v~~-----~~~~l~~~~~~~g~~~i~~l  461 (464)
T 3v7d_B          399 FYVSDNILVSGSE--N--QFNIYNLRSGKLVHANILK---DADQIW-----SVNF-----KGKTLVAAVEKDGQSFLEIL  461 (464)
T ss_dssp             EEECSSEEEEEET--T--EEEEEETTTCCEEESCTTT---TCSEEE-----EEEE-----ETTEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCEEEEecC--C--eEEEEECCCCcEEehhhcc---CCCcEE-----EEEe-----cCCEEEEEEEeCCeEEEEEe
Confidence            9999995555432  3  578888888875432 211   111122     2344     46778877778888888888


Q ss_pred             EC
Q 008927          387 DD  388 (548)
Q Consensus       387 dl  388 (548)
                      |.
T Consensus       462 df  463 (464)
T 3v7d_B          462 DF  463 (464)
T ss_dssp             EC
T ss_pred             ec
Confidence            74

>1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2

Probab=97.43  E-value=0.00017  Score=71.27  Aligned_cols=68  Identities=18%  Similarity=0.119  Sum_probs=51.0

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccc-ccCccChHHHHHH-hcCcEEEEeCCCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWT-SRGWAFVDVNYGGSTG  537 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~-~~~~~~~~~Q~~a-srGyaVl~~NyRGStG  537 (548)
                      ..+.+++++. || .+..++| |.        +++.|+||++|||.... ....+......|+ ..||.|+.+||||...
T Consensus        55 ~~~~~~i~~~-~g-~i~~~~y-~~--------~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~Vv~~dyrg~g~  123 (311)
T 1jji_A           55 RVEDRTIKGR-NG-DIRVRVY-QQ--------KPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPE  123 (311)
T ss_dssp             EEEEEEEEET-TE-EEEEEEE-ES--------SSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTT
T ss_pred             eEEEEEecCC-CC-cEEEEEE-cC--------CCCceEEEEECCcccccCChhHhHHHHHHHHHHhCCEEEEecCCCCCC
Confidence            4678889887 77 8999999 42        23569999999997532 2234555667788 6899999999999765


Q ss_pred             C
Q 008927          538 L  538 (548)
Q Consensus       538 y  538 (548)
                      .
T Consensus       124 ~  124 (311)
T 1jji_A          124 H  124 (311)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.41  E-value=0.048  Score=53.15  Aligned_cols=223  Identities=8%  Similarity=0.024  Sum_probs=111.2

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +|.++ +.|++++...++|++++.++  +..+.+...     .....+.+++||+ | |++....     ....|+++|.
T Consensus        38 a~~~~-g~lyv~d~~~~~I~~~d~~g--~~~~~~~~~-----~~p~gia~~~dG~-l-~vad~~~-----~~~~v~~~d~  102 (306)
T 2p4o_A           38 ASAPD-GTIFVTNHEVGEIVSITPDG--NQQIHATVE-----GKVSGLAFTSNGD-L-VATGWNA-----DSIPVVSLVK  102 (306)
T ss_dssp             EECTT-SCEEEEETTTTEEEEECTTC--CEEEEEECS-----SEEEEEEECTTSC-E-EEEEECT-----TSCEEEEEEC
T ss_pred             EECCC-CCEEEEeCCCCeEEEECCCC--ceEEEEeCC-----CCceeEEEcCCCc-E-EEEeccC-----CcceEEEEcC
Confidence            34343 35888887778999999875  322222221     2455678999998 3 3333211     1236899998


Q ss_pred             CCCCccCcEEeeecC--CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCC----CCCcccC
Q 008927          229 NGQNIQEPKVLVSGS--DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF----DPTIVES  302 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~--~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~----~~~~~~~  302 (548)
                      .+++   .+.+....  .+...+...+++ .+ |+. +.     ....||+++... +.. ......+.    ...  ..
T Consensus       103 ~~g~---~~~~~~~~~~~~~~g~~~~~~~-~~-~v~-d~-----~~g~i~~~d~~~-~~~-~v~~~~~~~~~~~~~--~~  167 (306)
T 2p4o_A          103 SDGT---VETLLTLPDAIFLNGITPLSDT-QY-LTA-DS-----YRGAIWLIDVVQ-PSG-SIWLEHPMLARSNSE--SV  167 (306)
T ss_dssp             TTSC---EEEEEECTTCSCEEEEEESSSS-EE-EEE-ET-----TTTEEEEEETTT-TEE-EEEEECGGGSCSSTT--CC
T ss_pred             CCCe---EEEEEeCCCccccCcccccCCC-cE-EEE-EC-----CCCeEEEEeCCC-CcE-eEEEECCcccccccc--CC
Confidence            8887   66655432  223334445544 33 344 21     135899999763 321 11111110    000  01


Q ss_pred             CcCc-eECcCCcEEEEEeCCCCeeeEEEEeccC-CeeE--eecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC
Q 008927          303 PTEP-KWSSKGELFFVTDRKNGFWNLHKWIESN-NEVL--AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (548)
Q Consensus       303 ~~~~-~wspDG~L~~~sd~~~g~~~Ly~~d~~~-g~~~--~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~  378 (548)
                      ...| ..++||+.+|++|.  +...|+++++++ ++..  .+..   ....|      ..+.+.+   ++ .||++ .. 
T Consensus       168 ~~~pngis~dg~~lyv~d~--~~~~I~~~~~~~~g~~~~~~~~~---~~~~P------~gi~vd~---dG-~l~va-~~-  230 (306)
T 2p4o_A          168 FPAANGLKRFGNFLYVSNT--EKMLLLRIPVDSTDKPGEPEIFV---EQTNI------DDFAFDV---EG-NLYGA-TH-  230 (306)
T ss_dssp             SCSEEEEEEETTEEEEEET--TTTEEEEEEBCTTSCBCCCEEEE---ESCCC------SSEEEBT---TC-CEEEE-CB-
T ss_pred             CCcCCCcCcCCCEEEEEeC--CCCEEEEEEeCCCCCCCccEEEe---ccCCC------CCeEECC---CC-CEEEE-eC-
Confidence            1111 12788885556665  234688888764 4321  1110   11112      1234432   44 45443 32 


Q ss_pred             CeEEEEEEECCCCceEee---cCCCceeEee--e---ecCCEEEEEEec
Q 008927          379 GRSYLGILDDFGHSLSLL---DIPFTDIDNI--T---LGNDCLFVEGAS  419 (548)
Q Consensus       379 g~~~L~~~dl~~g~~~~l---~~~~~~~~~~--s---~d~~~l~~~~ss  419 (548)
                      +...|.++|.+ |+...+   ..+......+  .   +++++||+....
T Consensus       231 ~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          231 IYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             TTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            23458889875 555432   2332222333  3   466777776653

>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A*

Probab=97.40  E-value=7e-05  Score=80.20  Aligned_cols=64  Identities=20%  Similarity=0.275  Sum_probs=44.3

Q ss_pred             ccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCc-cChHHHHHHh-cCcEEEEeCCC-CCCCCCh
Q 008927          468 TEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTS-RGWAFVDVNYG-GSTGLSS  540 (548)
Q Consensus       468 s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~-~~~~~Q~~as-rGyaVl~~NyR-GStGyG~  540 (548)
                      +. |...+  .+|.|.+.  .  +++++|+||+||||+...-... |+.  ..|++ +|++|+.+||| |..||+.
T Consensus        95 ~e-dcl~l--nv~~P~~~--~--~~~~~Pv~v~iHGG~~~~g~~~~~~~--~~la~~~g~vvv~~nYRlg~~gf~~  161 (542)
T 2h7c_A           95 SE-DCLYL--NIYTPADL--T--KKNRLPVMVWIHGGGLMVGAASTYDG--LALAAHENVVVVTIQYRLGIWGFFS  161 (542)
T ss_dssp             ES-CCCEE--EEEECSCT--T--SCCCEEEEEEECCSTTTSCCSTTSCC--HHHHHHHTCEEEEECCCCHHHHHCC
T ss_pred             CC-CCcEE--EEEECCCC--C--CCCCCCEEEEECCCcccCCCccccCH--HHHHhcCCEEEEecCCCCccccCCC
Confidence            45 77555  47778642  1  2467899999999987544332 333  34554 89999999999 7777654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.40  E-value=0.018  Score=59.41  Aligned_cols=152  Identities=6%  Similarity=0.036  Sum_probs=85.9

Q ss_pred             CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc
Q 008927          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (548)
Q Consensus       154 ~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~  233 (548)
                      ++.||+.+.. ++|+++++++  +..+.+...    ..+-..+.++++|+.|+.. ..+..   .....++.++.+++- 
T Consensus       149 ~g~Lyv~d~~-~~I~~id~~~--~~v~~~~~~----~~~P~~ia~d~~G~~lyva-d~~~~---~~~~~v~~~~~~g~~-  216 (430)
T 3tc9_A          149 HNHLYLVGEQ-HPTRLIDFEK--EYVSTVYSG----LSKVRTICWTHEADSMIIT-NDQNN---NDRPNNYILTRESGF-  216 (430)
T ss_dssp             EEEEEEEEBT-EEEEEEETTT--TEEEEEECC----CSCEEEEEECTTSSEEEEE-ECCSC---TTSEEEEEEEGGGTS-
T ss_pred             CCeEEEEeCC-CcEEEEECCC--CEEEEEecC----CCCcceEEEeCCCCEEEEE-eCCCC---cccceEEEEeCCCce-
Confidence            4577777654 7899999986  555555432    1234567899999976554 43211   123457777766543 


Q ss_pred             cCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc
Q 008927          234 QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (548)
Q Consensus       234 ~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~  313 (548)
                      ...+.+.... .-...+++|++.+|++..+       ...+|+.++.+. +...  ....... .  .....+.|+|||+
T Consensus       217 ~~~~~l~~~~-~p~giavdp~~g~lyv~d~-------~~~~V~~~~~~~-~~~~--~~~~~~~-~--~~P~gia~~pdG~  282 (430)
T 3tc9_A          217 KVITELTKGQ-NCNGAETHPINGELYFNSW-------NAGQVFRYDFTT-QETT--PLFTIQD-S--GWEFHIQFHPSGN  282 (430)
T ss_dssp             CSEEEEEECS-SCCCEEECTTTCCEEEEET-------TTTEEEEEETTT-TEEE--EEEECSS-S--SCCEEEEECTTSS
T ss_pred             eeeeeeccCC-CceEEEEeCCCCEEEEEEC-------CCCEEEEEECCC-CcEE--EEEEcCC-C--CcceeEEEcCCCC
Confidence            1013343322 2234578995555654442       246899999873 4321  1111111 1  2345689999999


Q ss_pred             EEEEEeCCCCeeeEEEEecc
Q 008927          314 LFFVTDRKNGFWNLHKWIES  333 (548)
Q Consensus       314 L~~~sd~~~g~~~Ly~~d~~  333 (548)
                      .+|++|.  +...|++++.+
T Consensus       283 ~lyv~d~--~~~~I~~~~~d  300 (430)
T 3tc9_A          283 YAYIVVV--NQHYILRSDYD  300 (430)
T ss_dssp             EEEEEET--TTTEEEEEEEE
T ss_pred             EEEEEEC--CCCEEEEEeCC
Confidence            4455554  22467776654

>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13

Probab=97.40  E-value=0.00039  Score=68.59  Aligned_cols=68  Identities=12%  Similarity=0.084  Sum_probs=52.1

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      .++...+++. ||.+++++.+.|.+.     ..+..|+||++||-....  ..|...+++|+++||.|+.+|+||.
T Consensus         6 ~~~~~~i~~~-dG~~l~~~~~~p~~~-----~~~~~~~VvllHG~g~~~--~~~~~~~~~L~~~G~~Vi~~D~rGh   73 (305)
T 1tht_A            6 KTIAHVLRVN-NGQELHVWETPPKEN-----VPFKNNTILIASGFARRM--DHFAGLAEYLSTNGFHVFRYDSLHH   73 (305)
T ss_dssp             SCEEEEEEET-TTEEEEEEEECCCTT-----SCCCSCEEEEECTTCGGG--GGGHHHHHHHHTTTCCEEEECCCBC
T ss_pred             cceEEEEEcC-CCCEEEEEEecCccc-----CCCCCCEEEEecCCccCc--hHHHHHHHHHHHCCCEEEEeeCCCC
Confidence            3566678887 999999999988531     123458899999976543  2466778899999999999999975

>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*

Probab=97.39  E-value=0.00053  Score=68.62  Aligned_cols=73  Identities=21%  Similarity=0.064  Sum_probs=52.8

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCc----cChHHHHHHhcCcEEEEeCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI----LNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~----~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +.+.+++++. ||..++.+.+.|.... .. +....|+||++||.+.....+.    +....+.|+++||.|+.+|+||.
T Consensus        26 ~~~~~~~~~~-dG~~l~~~~~~~~~~~-~~-~~~~~~~vvl~HG~~~~~~~~~~~~~~~~~a~~l~~~G~~vi~~D~~G~  102 (377)
T 1k8q_A           26 PAEEYEVVTE-DGYILGIDRIPYGRKN-SE-NIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGN  102 (377)
T ss_dssp             CCEEEEEECT-TSEEEEEEEECSCSSC-CT-TTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTS
T ss_pred             CceEEEeEcC-CCCEEEEEEecCCCCC-cc-ccCCCCeEEEECCCCCchhhhhcCCCcccHHHHHHHCCCCEEEecCCCC
Confidence            4578889998 9999999999874310 00 1124689999999987654322    12345589999999999999984

>3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0

Probab=97.38  E-value=0.00011  Score=70.74  Aligned_cols=70  Identities=13%  Similarity=0.046  Sum_probs=49.6

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCc-cChHHHHHHhcCcEEEEeCCCCC
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~-~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      .+.+++.+..+|.+++..+|.|.+  ++   ++++|+||++||++....... .....++++.+||+|+.+|+||.
T Consensus        15 ~~~~~~~s~~~g~~~~~~v~~P~~--~~---~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~g~   85 (278)
T 3e4d_A           15 QGVFSHQSETLKSEMTFAVYVPPK--AI---HEPCPVVWYLSGLTCTHANVMEKGEYRRMASELGLVVVCPDTSPR   85 (278)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECGG--GG---TSCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEECCSSCC
T ss_pred             EEEEEEeccccCCcceEEEEcCCC--CC---CCCCCEEEEEcCCCCCccchhhcccHHHHHhhCCeEEEecCCccc
Confidence            355667554378999999999964  31   467899999999976543211 11234566777999999999753

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.003  Score=60.99  Aligned_cols=150  Identities=7%  Similarity=0.039  Sum_probs=89.3

Q ss_pred             eeEE-ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRI-FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~-~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      .|.+ +++.|+. ...++.|.+.+..   ...+.+....   ........|+|+++ ++....+         ..|.++|
T Consensus       149 ~~~~~~~~~l~~-~~~d~~i~i~d~~---~~~~~~~~~~---~~~i~~~~~~~~~~-~~~~~~d---------g~i~i~d  211 (313)
T 3odt_A          149 KVVSFSENKFLT-ASADKTIKLWQND---KVIKTFSGIH---NDVVRHLAVVDDGH-FISCSND---------GLIKLVD  211 (313)
T ss_dssp             EEEETTTTEEEE-EETTSCEEEEETT---EEEEEECSSC---SSCEEEEEEEETTE-EEEEETT---------SEEEEEE
T ss_pred             EEccCCCCEEEE-EECCCCEEEEecC---ceEEEEeccC---cccEEEEEEcCCCe-EEEccCC---------CeEEEEE
Confidence            4555 4555544 4456778877743   2233343311   23456778999998 5443322         4689999


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      +.+++.  ...+...........|+|||+ |+...        ....|++.++.. ++.  ...+....    ..+....
T Consensus       212 ~~~~~~--~~~~~~~~~~i~~~~~~~~~~-l~~~~--------~dg~v~iwd~~~-~~~--~~~~~~~~----~~i~~~~  273 (313)
T 3odt_A          212 MHTGDV--LRTYEGHESFVYCIKLLPNGD-IVSCG--------EDRTVRIWSKEN-GSL--KQVITLPA----ISIWSVD  273 (313)
T ss_dssp             TTTCCE--EEEEECCSSCEEEEEECTTSC-EEEEE--------TTSEEEEECTTT-CCE--EEEEECSS----SCEEEEE
T ss_pred             CCchhh--hhhhhcCCceEEEEEEecCCC-EEEEe--------cCCEEEEEECCC-Cce--eEEEeccC----ceEEEEE
Confidence            998871  233333344567789999994 55333        135799999874 442  33343332    4577889


Q ss_pred             ECcCCcEEEEEeCCCCeeeEEEEeccCCee
Q 008927          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEV  337 (548)
Q Consensus       308 wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~  337 (548)
                      |+|||+++. ... +|  .|+.+++.+++.
T Consensus       274 ~~~~~~~~~-~~~-dg--~i~iw~~~~~~~  299 (313)
T 3odt_A          274 CMSNGDIIV-GSS-DN--LVRIFSQEKSRW  299 (313)
T ss_dssp             ECTTSCEEE-EET-TS--CEEEEESCGGGC
T ss_pred             EccCCCEEE-EeC-CC--cEEEEeCCCCce
Confidence            999999443 333 44  466666666543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.33  E-value=0.052  Score=51.10  Aligned_cols=176  Identities=15%  Similarity=0.116  Sum_probs=97.6

Q ss_pred             eeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCc
Q 008927          220 TTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI  299 (548)
Q Consensus       220 ~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~  299 (548)
                      .+.|.++|+++|+   ...-..-+..+..-.+.++|++|.-+.|       ....++++|.++ .++  ...+.-..   
T Consensus        42 ~S~v~~vD~~tgk---v~~~~~l~~~~fgeGi~~~~~~ly~ltw-------~~~~v~v~D~~t-l~~--~~ti~~~~---  105 (243)
T 3mbr_X           42 RSSVRKVDLETGR---ILQRAEVPPPYFGAGIVAWRDRLIQLTW-------RNHEGFVYDLAT-LTP--RARFRYPG---  105 (243)
T ss_dssp             SCEEEEEETTTCC---EEEEEECCTTCCEEEEEEETTEEEEEES-------SSSEEEEEETTT-TEE--EEEEECSS---
T ss_pred             CceEEEEECCCCC---EEEEEeCCCCcceeEEEEeCCEEEEEEe-------eCCEEEEEECCc-CcE--EEEEeCCC---
Confidence            4689999999998   4332222222222345667888865553       467899999874 442  22333211   


Q ss_pred             ccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeE-eecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC
Q 008927          300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (548)
Q Consensus       300 ~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~-~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~  378 (548)
                          .....++||+.+|++|. +  ..|+.+|+++.++. .+.-..  .+.+.  ...+.+.+     .+++||...  -
T Consensus       106 ----~Gwglt~dg~~L~vSdg-s--~~l~~iDp~t~~~~~~I~V~~--~g~~~--~~lNeLe~-----~~G~lyanv--w  167 (243)
T 3mbr_X          106 ----EGWALTSDDSHLYMSDG-T--AVIRKLDPDTLQQVGSIKVTA--GGRPL--DNLNELEW-----VNGELLANV--W  167 (243)
T ss_dssp             ----CCCEEEECSSCEEEECS-S--SEEEEECTTTCCEEEEEECEE--TTEEC--CCEEEEEE-----ETTEEEEEE--T
T ss_pred             ----CceEEeeCCCEEEEECC-C--CeEEEEeCCCCeEEEEEEEcc--CCccc--ccceeeEE-----eCCEEEEEE--C
Confidence                12344578885566764 3  46999999887653 232110  00010  01112333     245666332  2


Q ss_pred             CeEEEEEEECCCCceE-eecCC------------C-ceeEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 008927          379 GRSYLGILDDFGHSLS-LLDIP------------F-TDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLD  432 (548)
Q Consensus       379 g~~~L~~~dl~~g~~~-~l~~~------------~-~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~  432 (548)
                      ....|.++|+++|++. .+...            . ....++  ++++++|++++-   .-+.+|.+.+.
T Consensus       168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK---~wp~~~~v~~~  234 (243)
T 3mbr_X          168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK---RWPMLYEIRLT  234 (243)
T ss_dssp             TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET---TCSEEEEEEEC
T ss_pred             CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC---CCCcEEEEEEe
Confidence            2347999999999865 33311            1 123444  456777776653   34678877653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.32  E-value=0.065  Score=52.72  Aligned_cols=158  Identities=9%  Similarity=0.041  Sum_probs=84.2

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCC--CceecCC----CC-CCCCceecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDS--SPLPITP----DY-GEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~--~~~~lT~----~~-~~~~~~~~~~~~Sp-DG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      .|++++..+++|++++.++  .  ....+..    .. .........++++| +|. |++ +....      ...|+++|
T Consensus       103 ~l~v~d~~~~~v~~~~~~g--~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv-~d~~~------~~~I~~~~  172 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHS--KEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFV-SDGYC------NSRIVQFS  172 (329)
T ss_dssp             CEEEEETTTTEEEEECTTC--SSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEE-EECSS------CCEEEEEC
T ss_pred             CEEEEECCCCEEEEEeCCC--CeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEE-EeCCC------CCeEEEEc
Confidence            4888877778999999876  3  2333321    00 00011234578999 555 433 33211      25789999


Q ss_pred             CCCCCccCcEEeee-cC------C---ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCC
Q 008927          228 LNGQNIQEPKVLVS-GS------D---FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP  297 (548)
Q Consensus       228 l~~g~~~~~~~L~~-~~------~---~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~  297 (548)
                      .++..   ...+.. +.      .   .-...+++||+..|+ ++..      ....|.+++.+ +|++  ...+.....
T Consensus       173 ~~g~~---~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~-v~d~------~~~~I~~~~~~-~G~~--~~~~~~~~~  239 (329)
T 3fvz_A          173 PSGKF---VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLC-VADR------ENGRIQCFKTD-TKEF--VREIKHASF  239 (329)
T ss_dssp             TTSCE---EEEECEECCSSSCCTTEESCEEEEEEETTTTEEE-EEET------TTTEEEEEETT-TCCE--EEEECCTTT
T ss_pred             CCCCE---EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEE-EEEC------CCCEEEEEECC-CCcE--EEEEecccc
Confidence            65543   333321 11      1   134557899966665 4422      24679999987 3553  233322110


Q ss_pred             CcccCCcCceECcCCcEEEEEeC-----CCCeeeEEEEeccCCeeEee
Q 008927          298 TIVESPTEPKWSSKGELFFVTDR-----KNGFWNLHKWIESNNEVLAI  340 (548)
Q Consensus       298 ~~~~~~~~~~wspDG~L~~~sd~-----~~g~~~Ly~~d~~~g~~~~l  340 (548)
                      .  .......++| | +++..+.     ..+...+++++..+|+....
T Consensus       240 ~--~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~  283 (329)
T 3fvz_A          240 G--RNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV  283 (329)
T ss_dssp             T--TCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred             C--CCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence            1  2344567888 4 3333332     12234688888878876544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.31  E-value=0.033  Score=53.06  Aligned_cols=213  Identities=10%  Similarity=0.170  Sum_probs=118.5

Q ss_pred             HHhcCCCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCC-cccCCCCCCccccceeeCCeeeEEECCEEEEE
Q 008927           83 VVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEP-SDITPKEYAVRTTAQEYGGGAFRIFGDTVIFS  160 (548)
Q Consensus        83 ~l~~~~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~-~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~  160 (548)
                      .|......++.+.++| ++++|.+...     ...|+.++..  +.. +.+.-.++      ..+.|-++. .++.++.+
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~-----~~~I~~ld~~--g~v~~~i~l~g~------~D~EGIa~~-~~g~~~vs   86 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINK-----PAAIVEMTTN--GDLIRTIPLDFV------KDLETIEYI-GDNQFVIS   86 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEET-----TEEEEEEETT--CCEEEEEECSSC------SSEEEEEEC-STTEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECC-----CCeEEEEeCC--CCEEEEEecCCC------CChHHeEEe-CCCEEEEE
Confidence            4445556788999999 7778777754     2347777665  233 22211111      123333332 23356666


Q ss_pred             eCCCCeEEEEeCCCCCCCc---eecC-CC-CCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE--CCCCCc
Q 008927          161 NYKDQRLYKHSIDSKDSSP---LPIT-PD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA--LNGQNI  233 (548)
Q Consensus       161 ~~~~~~Ly~~~~~~~~~~~---~~lT-~~-~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id--l~~g~~  233 (548)
                      ++++++|++++++.+ ++.   ..++ +. .......+..++|+|++++|+.+++..       ...||.++  +.+.. 
T Consensus        87 ~E~~~~l~~~~v~~~-~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-------p~~i~~~~g~~~~~~-  157 (255)
T 3qqz_A           87 DERDYAIYVISLTPN-SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-------PIEVYKVNGLLSSNE-  157 (255)
T ss_dssp             ETTTTEEEEEEECTT-CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-------SEEEEEEESTTCSSC-
T ss_pred             ECCCCcEEEEEcCCC-CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-------CceEEEEcccccCCc-
Confidence            667789998887652 321   2221 11 001123456789999999987776553       24789888  22222 


Q ss_pred             cCcEEeee----cC---CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCC---cccCC
Q 008927          234 QEPKVLVS----GS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT---IVESP  303 (548)
Q Consensus       234 ~~~~~L~~----~~---~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~---~~~~~  303 (548)
                        .+++..    ..   .-.+...+.|.-.+|..++ +      ....|.++|.+  |++.....+..+..+   .....
T Consensus       158 --l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS-~------~s~~L~~~d~~--g~~~~~~~L~~g~~~l~~~~~qp  226 (255)
T 3qqz_A          158 --LHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLS-H------ESRALQEVTLV--GEVIGEMSLTKGSRGLSHNIKQA  226 (255)
T ss_dssp             --CEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEE-T------TTTEEEEECTT--CCEEEEEECSTTGGGCSSCCCSE
T ss_pred             --eeeecchhhccccccCCceeEEEcCCCCeEEEEE-C------CCCeEEEEcCC--CCEEEEEEcCCccCCcccccCCC
Confidence              344321    11   1135667888777776665 2      24568888765  444344445432100   00123


Q ss_pred             cCceECcCCcEEEEEeCCCCeeeEEEEecc
Q 008927          304 TEPKWSSKGELFFVTDRKNGFWNLHKWIES  333 (548)
Q Consensus       304 ~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~  333 (548)
                      ...++.++|+||++++. +   .+|++...
T Consensus       227 EGia~d~~G~lyIvsE~-n---~~y~f~~~  252 (255)
T 3qqz_A          227 EGVAMDASGNIYIVSEP-N---RFYRFTPQ  252 (255)
T ss_dssp             EEEEECTTCCEEEEETT-T---EEEEEEC-
T ss_pred             CeeEECCCCCEEEEcCC-c---eEEEEEec
Confidence            45689999998888765 2   57777643

>3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis}

Probab=97.29  E-value=0.00032  Score=66.43  Aligned_cols=67  Identities=13%  Similarity=0.095  Sum_probs=49.6

Q ss_pred             eEEEe-eccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927          462 ELIEF-PTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       462 e~i~~-~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG  537 (548)
                      +.+++ ++. ||.+++.+.+.|.+        ...|+||++||++.......+....++++++||.|+.+|+||...
T Consensus        12 ~~~~~~~~~-~g~~l~~~~~~~~~--------~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~   79 (270)
T 3llc_A           12 HAITVGQGS-DARSIAALVRAPAQ--------DERPTCIWLGGYRSDMTGTKALEMDDLAASLGVGAIRFDYSGHGA   79 (270)
T ss_dssp             EEEEESSGG-GCEEEEEEEECCSS--------TTSCEEEEECCTTCCTTSHHHHHHHHHHHHHTCEEEEECCTTSTT
T ss_pred             ceEEEeecc-CcceEEEEeccCCC--------CCCCeEEEECCCccccccchHHHHHHHHHhCCCcEEEeccccCCC
Confidence            44555 666 99999988887742        235999999999865443334456678889999999999998644

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.26  E-value=0.074  Score=54.90  Aligned_cols=152  Identities=13%  Similarity=0.046  Sum_probs=83.7

Q ss_pred             CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc
Q 008927          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (548)
Q Consensus       154 ~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~  233 (548)
                      ++.|++.+.. .+|+++++++  +..+.+...    ......++++++|+ |++ ......   .....++.++..++..
T Consensus       152 ~g~Lyv~D~~-~~I~~id~~~--g~v~~~~~~----~~~P~giavd~dG~-lyV-ad~~~~---~~~~gv~~~~~~~~~~  219 (433)
T 4hw6_A          152 YDDLYWVGQR-DAFRHVDFVN--QYVDIKTTN----IGQCADVNFTLNGD-MVV-VDDQSS---DTNTGIYLFTRASGFT  219 (433)
T ss_dssp             TCEEEEECBT-SCEEEEETTT--TEEEEECCC----CSCEEEEEECTTCC-EEE-EECCSC---TTSEEEEEECGGGTTC
T ss_pred             CCEEEEEeCC-CCEEEEECCC--CEEEEeecC----CCCccEEEECCCCC-EEE-EcCCCC---cccceEEEEECCCCee
Confidence            3678887655 7899999975  566555432    12345678999999 544 333210   1124567777655431


Q ss_pred             cCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc
Q 008927          234 QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (548)
Q Consensus       234 ~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~  313 (548)
                       ....+... ..-...+++|+...|. +. +.     ....|+.++.+ +|.+.. .++.... .  .....+.|+|||+
T Consensus       220 -~~~~~~~~-~~P~giavd~~~G~ly-v~-d~-----~~~~V~~~d~~-~g~~~~-~~~~~~~-~--~~~~~ia~dpdG~  285 (433)
T 4hw6_A          220 -ERLSLCNA-RGAKTCAVHPQNGKIY-YT-RY-----HHAMISSYDPA-TGTLTE-EEVMMDT-K--GSNFHIVWHPTGD  285 (433)
T ss_dssp             -CEEEEEEC-SSBCCCEECTTTCCEE-EC-BT-----TCSEEEEECTT-TCCEEE-EEEECSC-C--SSCEEEEECTTSS
T ss_pred             -cccccccc-CCCCEEEEeCCCCeEE-EE-EC-----CCCEEEEEECC-CCeEEE-EEeccCC-C--CCcccEEEeCCCC
Confidence             01233322 2223457899444464 44 11     24579998876 354311 1222211 1  2223589999999


Q ss_pred             EEEEEeCCCCeeeEEEEecc
Q 008927          314 LFFVTDRKNGFWNLHKWIES  333 (548)
Q Consensus       314 L~~~sd~~~g~~~Ly~~d~~  333 (548)
                      .+|++|.  +...|++++.+
T Consensus       286 ~LYvad~--~~~~I~~~~~d  303 (433)
T 4hw6_A          286 WAYIIYN--GKHCIYRVDYN  303 (433)
T ss_dssp             EEEEEET--TTTEEEEEEBC
T ss_pred             EEEEEeC--CCCEEEEEeCC
Confidence            5555554  33468887754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.23  E-value=0.034  Score=52.39  Aligned_cols=158  Identities=10%  Similarity=-0.010  Sum_probs=89.0

Q ss_pred             EEECCEEEEEeCCC--CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          151 RIFGDTVIFSNYKD--QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       151 ~~~~~~i~F~~~~~--~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      ..+++.|+.+....  ..|.++|+++  ++..+-....   ...++. ...+++++|+.+ ...       .+.++++|.
T Consensus        27 ~~~~~~LyestG~~g~S~v~~vD~~t--gkv~~~~~l~---~~~fge-Gi~~~~~~ly~l-tw~-------~~~v~v~D~   92 (243)
T 3mbr_X           27 FYLRGHLYESTGETGRSSVRKVDLET--GRILQRAEVP---PPYFGA-GIVAWRDRLIQL-TWR-------NHEGFVYDL   92 (243)
T ss_dssp             EEETTEEEEEECCTTSCEEEEEETTT--CCEEEEEECC---TTCCEE-EEEEETTEEEEE-ESS-------SSEEEEEET
T ss_pred             EEECCEEEEECCCCCCceEEEEECCC--CCEEEEEeCC---CCccee-EEEEeCCEEEEE-Eee-------CCEEEEEEC
Confidence            34677888886543  4899999987  6553322211   111222 244567886554 322       358999999


Q ss_pred             CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      ++.+.  ...+.-+..   ...+.+||++|+ ++ +.      ..+|+++|.++ .++.....+.... ........+.|
T Consensus        93 ~tl~~--~~ti~~~~~---Gwglt~dg~~L~-vS-dg------s~~l~~iDp~t-~~~~~~I~V~~~g-~~~~~lNeLe~  157 (243)
T 3mbr_X           93 ATLTP--RARFRYPGE---GWALTSDDSHLY-MS-DG------TAVIRKLDPDT-LQQVGSIKVTAGG-RPLDNLNELEW  157 (243)
T ss_dssp             TTTEE--EEEEECSSC---CCEEEECSSCEE-EE-CS------SSEEEEECTTT-CCEEEEEECEETT-EECCCEEEEEE
T ss_pred             CcCcE--EEEEeCCCC---ceEEeeCCCEEE-EE-CC------CCeEEEEeCCC-CeEEEEEEEccCC-cccccceeeEE
Confidence            98762  233332221   224567898774 66 32      45799999874 3322222232211 00012234566


Q ss_pred             CcCCcEEEEEeCCCCeeeEEEEeccCCeeEeec
Q 008927          309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (548)
Q Consensus       309 spDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~  341 (548)
                      . ||+||...-. +  ..|.++|+++|++....
T Consensus       158 ~-~G~lyanvw~-s--~~I~vIDp~tG~V~~~i  186 (243)
T 3mbr_X          158 V-NGELLANVWL-T--SRIARIDPASGKVVAWI  186 (243)
T ss_dssp             E-TTEEEEEETT-T--TEEEEECTTTCBEEEEE
T ss_pred             e-CCEEEEEECC-C--CeEEEEECCCCCEEEEE
Confidence            5 7876644322 2  37999999999976543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.21  E-value=0.15  Score=50.06  Aligned_cols=147  Identities=11%  Similarity=0.049  Sum_probs=75.7

Q ss_pred             CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee---
Q 008927          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS---  241 (548)
Q Consensus       165 ~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~---  241 (548)
                      +.|++++.++  ++........  .......++++|+|+ |+ +....       ...|+++|.++.. .....+..   
T Consensus        69 ~~i~~~d~~~--g~~~~~~~~~--~~~~p~gia~d~~g~-l~-v~d~~-------~~~v~~~~~~g~~-~~~~~~~~~~~  134 (329)
T 3fvz_A           69 DTILVIDPNN--AEILQSSGKN--LFYLPHGLSIDTDGN-YW-VTDVA-------LHQVFKLDPHSKE-GPLLILGRSMQ  134 (329)
T ss_dssp             CCEEEECTTT--CCEEEEECTT--TCSSEEEEEECTTSC-EE-EEETT-------TTEEEEECTTCSS-CCSEEESBTTB
T ss_pred             CcEEEEECCC--CeEEeccCCC--ccCCceEEEECCCCC-EE-EEECC-------CCEEEEEeCCCCe-EEEEEecccCC
Confidence            3689998875  4443222110  011344678999998 43 33332       2479999987762 00333321   


Q ss_pred             -c--CC---ceeeeEECC-CCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcC-CC-----CCcccCCcCceE
Q 008927          242 -G--SD---FYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-FD-----PTIVESPTEPKW  308 (548)
Q Consensus       242 -~--~~---~~~~p~~SP-DGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~-~~-----~~~~~~~~~~~w  308 (548)
                       +  ..   .-...+++| +|+ |+ ++...     ....|++++.  +|.+  ...+.. ..     ...........+
T Consensus       135 ~g~~~~~~~~P~~ia~~~~~g~-ly-v~d~~-----~~~~I~~~~~--~g~~--~~~~~~~g~~~~~~~~~~~~p~gia~  203 (329)
T 3fvz_A          135 PGSDQNHFCQPTDVAVEPSTGA-VF-VSDGY-----CNSRIVQFSP--SGKF--VTQWGEESSGSSPRPGQFSVPHSLAL  203 (329)
T ss_dssp             CCCSTTCCSSEEEEEECTTTCC-EE-EEECS-----SCCEEEEECT--TSCE--EEEECEECCSSSCCTTEESCEEEEEE
T ss_pred             CCCCccccCCCcEEEEeCCCCe-EE-EEeCC-----CCCeEEEEcC--CCCE--EEEeccCCCCCCCCCcccCCCcEEEE
Confidence             0  11   234568999 555 54 44211     2457888874  3542  222211 00     000012445788


Q ss_pred             CcCCcEEEEEeCCCCeeeEEEEeccCCeeE
Q 008927          309 SSKGELFFVTDRKNGFWNLHKWIESNNEVL  338 (548)
Q Consensus       309 spDG~L~~~sd~~~g~~~Ly~~d~~~g~~~  338 (548)
                      +||+..+|++|.  +...|.++++++|+..
T Consensus       204 d~~~g~l~v~d~--~~~~I~~~~~~~G~~~  231 (329)
T 3fvz_A          204 VPHLDQLCVADR--ENGRIQCFKTDTKEFV  231 (329)
T ss_dssp             ETTTTEEEEEET--TTTEEEEEETTTCCEE
T ss_pred             ECCCCEEEEEEC--CCCEEEEEECCCCcEE
Confidence            999444455554  2346888888766654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.21  E-value=0.012  Score=57.67  Aligned_cols=136  Identities=7%  Similarity=-0.007  Sum_probs=71.7

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc---eecCCCCCCCCceecceeeCC--CCCEEEEEEeccCCCCCCceeEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDP--RFNRYVTVREDRRQDALNSTTEI  223 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~---~~lT~~~~~~~~~~~~~~~Sp--DG~~i~~v~~~~~~~~~~~~~~l  223 (548)
                      +|+++|..|+- ...|+.|.+.++..  +..   ..+...    ...+....|+|  +|+.|+....+         ..|
T Consensus        20 ~~s~~g~~las-gs~D~~v~lwd~~~--~~~~~~~~l~gH----~~~V~~v~~~~~~~~~~l~s~s~D---------~~v   83 (316)
T 3bg1_A           20 QMDYYGTRLAT-CSSDRSVKIFDVRN--GGQILIADLRGH----EGPVWQVAWAHPMYGNILASCSYD---------RKV   83 (316)
T ss_dssp             EECGGGCEEEE-EETTTEEEEEEEET--TEEEEEEEEECC----SSCEEEEEECCGGGSSCEEEEETT---------SCE
T ss_pred             eEcCCCCEEEE-EeCCCeEEEEEecC--CCcEEEEEEcCC----CccEEEEEeCCCCCCCEEEEEECC---------CEE
Confidence            45556665544 33566566556654  322   223322    22455678886  47776655433         247


Q ss_pred             EEEECCCCCccCcEEeeecCCceeeeEECCC--CCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCccc
Q 008927          224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE  301 (548)
Q Consensus       224 ~~idl~~g~~~~~~~L~~~~~~~~~p~~SPD--Gk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~  301 (548)
                      .++|+.+++......+......+....|+||  |+.|+-...        ...|.+.++...+.......+.+..    .
T Consensus        84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~--------D~~i~lwd~~~~~~~~~~~~~~~h~----~  151 (316)
T 3bg1_A           84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS--------DGAISLLTYTGEGQWEVKKINNAHT----I  151 (316)
T ss_dssp             EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECS--------SSCEEEEEECSSSCEEECCBTTSSS----S
T ss_pred             EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcC--------CCCEEEEecCCCCCcceeeeecccc----C
Confidence            7778887741001222223344667789998  777763331        2457777876432211111122222    3


Q ss_pred             CCcCceECcCC
Q 008927          302 SPTEPKWSSKG  312 (548)
Q Consensus       302 ~~~~~~wspDG  312 (548)
                      .+....|+|++
T Consensus       152 ~v~~~~~~~~~  162 (316)
T 3bg1_A          152 GCNAVSWAPAV  162 (316)
T ss_dssp             CBCCCEECCCC
T ss_pred             CcceEEEcccc
Confidence            56778899983

>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...

Probab=97.20  E-value=9.7e-05  Score=79.10  Aligned_cols=65  Identities=22%  Similarity=0.336  Sum_probs=43.4

Q ss_pred             ccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCcc-ChHHHHHHh-cCcEEEEeCCC-CCCCCCh
Q 008927          468 TEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTS-RGWAFVDVNYG-GSTGLSS  540 (548)
Q Consensus       468 s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~-~~~~Q~~as-rGyaVl~~NyR-GStGyG~  540 (548)
                      +. |...+.  +|.|.+.     +++++|+||+||||....-.... ....+.|++ +|++|+.+||| |+.||+.
T Consensus        93 ~e-dcl~l~--v~~P~~~-----~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~g~vvv~~nYRlg~~Gf~~  160 (543)
T 2ha2_A           93 SE-DCLYLN--VWTPYPR-----PASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLA  160 (543)
T ss_dssp             ES-CCCEEE--EEEESSC-----CSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHHHHHCC
T ss_pred             CC-cCCeEE--EeecCCC-----CCCCCeEEEEECCCccccCCCCCCcCChHHHHhcCCEEEEEeccccccccccc
Confidence            45 776654  4457531     24578999999999864433221 223467776 89999999999 6666653

>3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp}

Probab=97.18  E-value=0.00021  Score=71.00  Aligned_cols=57  Identities=12%  Similarity=0.060  Sum_probs=40.9

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccc-ccCccChHHHHHH-hcCcEEEEeCCCCCCCCC
Q 008927          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWT-SRGWAFVDVNYGGSTGLS  539 (548)
Q Consensus       475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~-~~~~~~~~~Q~~a-srGyaVl~~NyRGStGyG  539 (548)
                      +..++|.|.+        ++.|+||++|||.... ....|....+.|+ ..||.|+.+||||+..+.
T Consensus        84 ~~~~~~~p~~--------~~~p~vv~lHGgg~~~~~~~~~~~~~~~la~~~g~~vi~~D~r~~~~~~  142 (326)
T 3d7r_A           84 MQVFRFNFRH--------QIDKKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPKTPEFH  142 (326)
T ss_dssp             EEEEEEESTT--------CCSSEEEEECCSTTTSCCCHHHHHHHHHHHHHHCSEEEEECCCCTTTSC
T ss_pred             EEEEEEeeCC--------CCCeEEEEECCCcccCCCCHHHHHHHHHHHHHhCCEEEEEeCCCCCCCC
Confidence            6678888853        2459999999997533 2223444556676 569999999999988754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.15  E-value=0.13  Score=51.00  Aligned_cols=150  Identities=15%  Similarity=0.080  Sum_probs=82.5

Q ss_pred             eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (548)
Q Consensus       150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~  229 (548)
                      ...+.+.++...  ++.|++.++..  + ++.+....    .......+++  +.+++.....       ...|.++|+.
T Consensus       106 v~~~~~~~~~~~--~~~i~i~d~~~--~-~~~~~~~~----~~~~~~~~s~--~~la~~sg~~-------~g~v~iwd~~  167 (355)
T 3vu4_A          106 LFLSREFIVVSY--GDVISVFKFGN--P-WKRITDDI----RFGGVCEFSN--GLLVYSNEFN-------LGQIHITKLQ  167 (355)
T ss_dssp             EEECSSEEEEEE--TTEEEEEESST--T-CCBSSCCE----EEEEEEEEET--TEEEEEESSC-------TTCEEEEECC
T ss_pred             EEEcCCEEEEEE--cCEEEEEECCC--C-ceeeEEec----cCCceEEEEc--cEEEEeCCCc-------CcEEEEEECC
Confidence            334455555555  56788888875  2 23333321    1222334666  5666642222       1357778887


Q ss_pred             CCCc-------------cC-cEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCce-EEEEEecCCCceeeeEEEc-
Q 008927          230 GQNI-------------QE-PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE-LWVGYISENGDVYKRVCVA-  293 (548)
Q Consensus       230 ~g~~-------------~~-~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~-L~v~~~~~~g~~~~~~~l~-  293 (548)
                      ++..             .+ .+.+....+.+....|||||+.|+-.+.        ... |.+.|+.. ++  ....+. 
T Consensus       168 ~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~--------d~~~v~iwd~~~-~~--~~~~~~~  236 (355)
T 3vu4_A          168 SSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ--------DGTIIRVFKTED-GV--LVREFRR  236 (355)
T ss_dssp             C------------------CCEEECCCSSCEEEEEECTTSSEEEEEET--------TCSEEEEEETTT-CC--EEEEEEC
T ss_pred             CCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC--------CCCEEEEEECCC-Cc--EEEEEEc
Confidence            6530             00 2333333445677899999998874441        234 88889874 54  233444 


Q ss_pred             C-CCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCC
Q 008927          294 G-FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN  335 (548)
Q Consensus       294 ~-~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g  335 (548)
                      + ..    ..+....|+|||++++.... ++.  |..+++..+
T Consensus       237 g~h~----~~v~~~~~s~~~~~l~s~s~-d~~--v~iw~~~~~  272 (355)
T 3vu4_A          237 GLDR----ADVVDMKWSTDGSKLAVVSD-KWT--LHVFEIFND  272 (355)
T ss_dssp             TTCC----SCEEEEEECTTSCEEEEEET-TCE--EEEEESSCC
T ss_pred             CCCC----CcEEEEEECCCCCEEEEEEC-CCE--EEEEEccCC
Confidence            2 22    46788999999995555444 454  444555443

>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa}

Probab=97.12  E-value=0.0012  Score=63.91  Aligned_cols=66  Identities=15%  Similarity=0.234  Sum_probs=48.9

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ..+.++|++  +|..+...++.+..      ..+..|+||++||++....  .|....+.|+++||.|+.+|+||.
T Consensus        19 ~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~p~vv~~hG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~G~   84 (315)
T 4f0j_A           19 PVHYLDFTS--QGQPLSMAYLDVAP------KKANGRTILLMHGKNFCAG--TWERTIDVLADAGYRVIAVDQVGF   84 (315)
T ss_dssp             CCEEEEEEE--TTEEEEEEEEEECC------SSCCSCEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEEECCTTS
T ss_pred             cceeEEEec--CCCCeeEEEeecCC------CCCCCCeEEEEcCCCCcch--HHHHHHHHHHHCCCeEEEeecCCC
Confidence            456788877  57776666554421      1234599999999986554  466778899999999999999984

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.10  E-value=0.068  Score=55.91  Aligned_cols=163  Identities=7%  Similarity=0.012  Sum_probs=92.0

Q ss_pred             CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceee-------CCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIF-------DPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       154 ~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~-------SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      ++.|+.......+|+++|+++  +..+.|.........+...+.|       +++|+.|++. ....... .....++.+
T Consensus       151 ~~~Lyv~~~~~~~i~~ID~~~--~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyva-d~~~~~~-~~~~~V~~i  226 (496)
T 3kya_A          151 KDHLYICYDGHKAIQLIDLKN--RMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVA-IDYDGKG-DESPSVYII  226 (496)
T ss_dssp             EEEEEEEEETEEEEEEEETTT--TEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEE-ECCCTTG-GGEEEEEEE
T ss_pred             CCEEEEEECCCCeEEEEECCC--CEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEE-eCCCCCc-ccCceEEEE
Confidence            456777765557899999986  5666554321000113456678       9999976554 4332000 124568888


Q ss_pred             ECCC-CCccC---cEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC------CCce-e--------
Q 008927          227 ALNG-QNIQE---PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE------NGDV-Y--------  287 (548)
Q Consensus       227 dl~~-g~~~~---~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~------~g~~-~--------  287 (548)
                      +.+. |....   .+.+..... -...+++|+++.|++..+       ...+|+.++++.      ++.+ +        
T Consensus       227 ~r~~~G~~~~~~~~~~v~~~~~-p~giavdp~~g~LYvtd~-------~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          227 KRNADGTFDDRSDIQLIAAYKQ-CNGATIHPINGELYFNSY-------EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             ECCTTSCCSTTSCEEEEEEESC-CCCEEECTTTCCEEEEET-------TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             ecCCCCceeecccceeeccCCC-ceEEEEcCCCCeEEEEEC-------CCCEEEEEecccccccccCceeeccccccccc
Confidence            7655 33110   134443322 234578998888876653       245799999871      2332 0        


Q ss_pred             -eeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEecc
Q 008927          288 -KRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES  333 (548)
Q Consensus       288 -~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~  333 (548)
                       ...+..-.. .  .....+.|+|||+.+|++|.  +...|++++.+
T Consensus       299 ~~~~l~~~~~-~--~~p~~ia~~p~G~~lYvaD~--~~h~I~kid~d  340 (496)
T 3kya_A          299 TFKQLFTIAD-P--SWEFQIFIHPTGKYAYFGVI--NNHYFMRSDYD  340 (496)
T ss_dssp             TEEEEEECSS-S--SCCEEEEECTTSSEEEEEET--TTTEEEEEEEE
T ss_pred             ccceeEecCC-C--CCceEEEEcCCCCEEEEEeC--CCCEEEEEecC
Confidence             001222111 1  23456899999996667765  44578887653

>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23

Probab=97.10  E-value=0.00038  Score=63.58  Aligned_cols=56  Identities=16%  Similarity=0.177  Sum_probs=44.7

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccCh--HHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL--SIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~--~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ||.+++.+.+.|.+       ++..|+||++||++....  .|..  ..+.|+++||.|+.+|+||.
T Consensus        15 ~g~~l~~~~~~p~~-------~~~~~~vv~~hG~~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~   72 (210)
T 1imj_A           15 QGQALFFREALPGS-------GQARFSVLLLHGIRFSSE--TWQNLGTLHRLAQAGYRAVAIDLPGL   72 (210)
T ss_dssp             TTEEECEEEEECSS-------SCCSCEEEECCCTTCCHH--HHHHHTHHHHHHHTTCEEEEECCTTS
T ss_pred             CCeEEEEEEeCCCC-------CCCCceEEEECCCCCccc--eeecchhHHHHHHCCCeEEEecCCCC
Confidence            89999999998853       335699999999976543  3333  47889999999999999974

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.09  E-value=0.17  Score=48.13  Aligned_cols=222  Identities=11%  Similarity=0.095  Sum_probs=115.3

Q ss_pred             CEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCcc
Q 008927          155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ  234 (548)
Q Consensus       155 ~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~  234 (548)
                      +.|++....++.|++++.++   +.+.+....  .......+.++++|+. ++ ....       ...|+++|.+ ++  
T Consensus        73 g~l~v~~~~~~~v~~~d~~g---~~~~~~~~~--~~~~~~~i~~~~~g~l-~v-~~~~-------~~~i~~~~~~-g~--  135 (300)
T 2qc5_A           73 GDIWFTENGANKIGKLSKKG---GFTEYPLPQ--PDSGPYGITEGLNGDI-WF-TQLN-------GDRIGKLTAD-GT--  135 (300)
T ss_dssp             SCEEEEETTTTEEEEECTTS---CEEEEECSS--TTCCEEEEEECSTTCE-EE-EETT-------TTEEEEECTT-SC--
T ss_pred             CCEEEEecCCCeEEEECCCC---CeEEecCCC--CCCCCccceECCCCCE-EE-EccC-------CCeEEEECCC-CC--
Confidence            46777776667899999874   333332110  0123456678888873 33 2321       1479999988 55  


Q ss_pred             CcEEeee--cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCC
Q 008927          235 EPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (548)
Q Consensus       235 ~~~~L~~--~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG  312 (548)
                       ...+..  .........+++||+ | |+...      ....|++++.+  +++.. ..+....    .......+++||
T Consensus       136 -~~~~~~~~~~~~~~~i~~d~~g~-l-~v~~~------~~~~i~~~~~~--g~~~~-~~~~~~~----~~~~~i~~d~~g  199 (300)
T 2qc5_A          136 -IYEYDLPNKGSYPAFITLGSDNA-L-WFTEN------QNNSIGRITNT--GKLEE-YPLPTNA----AAPVGITSGNDG  199 (300)
T ss_dssp             -EEEEECSSTTCCEEEEEECTTSS-E-EEEET------TTTEEEEECTT--CCEEE-EECSSTT----CCEEEEEECTTS
T ss_pred             -EEEccCCCCCCCceeEEECCCCC-E-EEEec------CCCeEEEECCC--CcEEE-eeCCCCC----CCcceEEECCCC
Confidence             443321  122345567899998 4 45422      13578888873  44321 1121111    234566788898


Q ss_pred             cEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCc
Q 008927          313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS  392 (548)
Q Consensus       313 ~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~  392 (548)
                      +||+.... .  ..|++++. +++...+... .....|      ....+.+   + +.|++..  .+...|+++|+ +++
T Consensus       200 ~l~v~~~~-~--~~i~~~~~-~g~~~~~~~~-~~~~~~------~~i~~d~---~-g~l~v~~--~~~~~i~~~~~-~g~  261 (300)
T 2qc5_A          200 ALWFVEIM-G--NKIGRITT-TGEISEYDIP-TPNARP------HAITAGK---N-SEIWFTE--WGANQIGRITN-DNT  261 (300)
T ss_dssp             SEEEEETT-T--TEEEEECT-TCCEEEEECS-STTCCE------EEEEECS---T-TCEEEEE--TTTTEEEEECT-TSC
T ss_pred             CEEEEccC-C--CEEEEEcC-CCcEEEEECC-CCCCCc------eEEEECC---C-CCEEEec--cCCCeEEEECC-CCc
Confidence            87765533 2  26888888 5555443211 011111      1123321   3 3465543  23346888888 566


Q ss_pred             eEeecCC--CceeEeeeec-CCEEEEEEecCCCCCeEEEEEcC
Q 008927          393 LSLLDIP--FTDIDNITLG-NDCLFVEGASGVEPSSVAKVTLD  432 (548)
Q Consensus       393 ~~~l~~~--~~~~~~~s~d-~~~l~~~~ss~~~p~~l~~~d~~  432 (548)
                      .+.+..+  ......+..+ ++.+++.. .   . .|+++|++
T Consensus       262 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~-~---~-~i~~~~p~  299 (300)
T 2qc5_A          262 IQEYQLQTENAEPHGITFGKDGSVWFAL-K---C-KIGKLNLN  299 (300)
T ss_dssp             EEEEECCSTTCCCCCEEECTTSCEEEEC-S---S-EEEEEEEC
T ss_pred             EEEEECCccCCccceeEeCCCCCEEEEc-c---C-ceEEeCCC
Confidence            5554332  2223333222 34455432 2   2 77777753

>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17

Probab=97.08  E-value=0.00017  Score=76.85  Aligned_cols=66  Identities=23%  Similarity=0.329  Sum_probs=42.9

Q ss_pred             ccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccccc-CccChHHHHH-HhcCcEEEEeCCC-CCCCCCh
Q 008927          468 TEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYW-TSRGWAFVDVNYG-GSTGLSS  540 (548)
Q Consensus       468 s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~-~~~~~~~Q~~-asrGyaVl~~NyR-GStGyG~  540 (548)
                      +. |.  ++.-+|.|.+..    +++++|+||++|||....-. ..++...... +.+|++|+.+||| |..||+.
T Consensus        82 ~e-dc--l~l~v~~P~~~~----~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~~~~~~g~vvv~~nYRlg~~Gf~~  150 (522)
T 1ukc_A           82 SE-DC--LFINVFKPSTAT----SQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLA  150 (522)
T ss_dssp             ES-CC--CEEEEEEETTCC----TTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCC
T ss_pred             CC-cC--CEEEEEECCCCC----CCCCCCEEEEECCCccccCCccccCcHHHHHhcCCcEEEEEeccccccccccc
Confidence            44 66  455677786421    25678999999999875432 2344432222 2569999999999 6656664

>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A

Probab=97.08  E-value=0.00015  Score=76.75  Aligned_cols=63  Identities=24%  Similarity=0.326  Sum_probs=42.8

Q ss_pred             ccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCc-cChHHHHHHhcC-cEEEEeCCC-CCCCCC
Q 008927          468 TEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRG-WAFVDVNYG-GSTGLS  539 (548)
Q Consensus       468 s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~-~~~~~Q~~asrG-yaVl~~NyR-GStGyG  539 (548)
                      +. |+..+.  +|.|.+      .++++|+||++|||+...-... .....+.|+++| ++|+.+||| |..||+
T Consensus        81 ~e-dcl~l~--v~~P~~------~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~  146 (498)
T 2ogt_A           81 SE-DGLYLN--IWSPAA------DGKKRPVLFWIHGGAFLFGSGSSPWYDGTAFAKHGDVVVVTINYRMNVFGFL  146 (498)
T ss_dssp             BS-CCCEEE--EEESCS------SSCCEEEEEEECCSTTTSCCTTCGGGCCHHHHHHHTCEEEEECCCCHHHHCC
T ss_pred             CC-CCcEEE--EEecCC------CCCCCcEEEEEcCCccCCCCCCCCcCCHHHHHhCCCEEEEeCCCcCchhhcc
Confidence            55 776665  456742      2467899999999985432221 123357899887 999999999 444554

>3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A*

Probab=97.06  E-value=0.00035  Score=71.19  Aligned_cols=58  Identities=24%  Similarity=0.251  Sum_probs=43.3

Q ss_pred             CeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927          472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       472 G~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG  537 (548)
                      ...+++.+..|..      +++++|+||++||+....  ..|....+.|+++||+|+.+|+||..+
T Consensus        81 ~~~~p~~~~~P~~------~~~~~P~Vv~~HG~~~~~--~~~~~~a~~La~~Gy~V~~~d~~g~g~  138 (383)
T 3d59_A           81 SMTTPANWNSPLR------PGEKYPLVVFSHGLGAFR--TLYSAIGIDLASHGFIVAAVEHRDRSA  138 (383)
T ss_dssp             TCEESSEETCCBC------CSSCEEEEEEECCTTCCT--TTTHHHHHHHHHTTCEEEEECCCSSCS
T ss_pred             ceeeccccCCCcc------cCCCCCEEEEcCCCCCCc--hHHHHHHHHHHhCceEEEEeccCCCCc
Confidence            3455555555532      246789999999997554  346678899999999999999998754

>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans}

Probab=97.06  E-value=0.00095  Score=68.51  Aligned_cols=65  Identities=20%  Similarity=0.162  Sum_probs=47.6

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChH-HHHHHhcCcEEEEeCCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLS-IQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~-~Q~~asrGyaVl~~NyRGSt  536 (548)
                      ..+.++++.  +|.++++++++|.        +++.|+||++||++.....  |... .+.+.++||.|+.+|+||..
T Consensus       134 ~~~~~~i~~--~~~~l~~~~~~~~--------~~~~p~vv~~HG~~~~~~~--~~~~~~~~~~~~g~~vi~~D~~G~G  199 (405)
T 3fnb_A          134 PLKSIEVPF--EGELLPGYAIISE--------DKAQDTLIVVGGGDTSRED--LFYMLGYSGWEHDYNVLMVDLPGQG  199 (405)
T ss_dssp             CCEEEEEEE--TTEEEEEEEECCS--------SSCCCEEEEECCSSCCHHH--HHHHTHHHHHHTTCEEEEECCTTST
T ss_pred             CcEEEEEeE--CCeEEEEEEEcCC--------CCCCCEEEEECCCCCCHHH--HHHHHHHHHHhCCcEEEEEcCCCCc
Confidence            467888887  6889999999652        2355999999998554332  2222 23567999999999999853

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.02  E-value=0.031  Score=53.23  Aligned_cols=192  Identities=9%  Similarity=0.024  Sum_probs=107.0

Q ss_pred             CceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEEEEe
Q 008927           92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS  171 (548)
Q Consensus        92 ~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~~~  171 (548)
                      ..+.++ ++++|.....   .|+  |.+++...+...+++++.         ++-|-..++++++||....+++.++++|
T Consensus        58 qGL~~~-~~~Ly~stG~---~g~--v~~iD~~Tgkv~~~~l~~---------~~FgeGit~~g~~Ly~ltw~~~~v~V~D  122 (268)
T 3nok_A           58 QGLVFH-QGHFFESTGH---QGT--LRQLSLESAQPVWMERLG---------NIFAEGLASDGERLYQLTWTEGLLFTWS  122 (268)
T ss_dssp             EEEEEE-TTEEEEEETT---TTE--EEECCSSCSSCSEEEECT---------TCCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred             ceEEEE-CCEEEEEcCC---CCE--EEEEECCCCcEEeEECCC---------CcceeEEEEeCCEEEEEEccCCEEEEEE
Confidence            345666 7666554432   345  666665532223333221         1112235678889988888889999999


Q ss_pred             CCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee--ecCC---c
Q 008927          172 IDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--SGSD---F  245 (548)
Q Consensus       172 ~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~--~~~~---~  245 (548)
                      +++  .+. ..+....       ....+++||++|+. +. .       .+.|+.+|.++.+.  .+.+.  ....   +
T Consensus       123 ~~T--l~~~~ti~~~~-------eGwGLt~Dg~~L~v-Sd-G-------s~~l~~iDp~T~~v--~~~I~V~~~g~~v~~  182 (268)
T 3nok_A          123 GMP--PQRERTTRYSG-------EGWGLCYWNGKLVR-SD-G-------GTMLTFHEPDGFAL--VGAVQVKLRGQPVEL  182 (268)
T ss_dssp             TTT--TEEEEEEECSS-------CCCCEEEETTEEEE-EC-S-------SSEEEEECTTTCCE--EEEEECEETTEECCC
T ss_pred             CCc--CcEEEEEeCCC-------ceeEEecCCCEEEE-EC-C-------CCEEEEEcCCCCeE--EEEEEeCCCCccccc
Confidence            976  332 3443321       11235578987644 33 2       25899999999863  23332  2211   1


Q ss_pred             eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcC---------CCCCcccCCcCceECcCCcEEE
Q 008927          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG---------FDPTIVESPTEPKWSSKGELFF  316 (548)
Q Consensus       246 ~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~---------~~~~~~~~~~~~~wspDG~L~~  316 (548)
                      .....|. ||+ | |+..      |....|.++|.+ +|++.....+.+         .+..  .-....+|+|+++.+|
T Consensus       183 lNeLe~~-dG~-l-yanv------w~s~~I~vIDp~-TG~V~~~Idl~~L~~~~~~~~~~~~--~vlNGIA~dp~~~rlf  250 (268)
T 3nok_A          183 INELECA-NGV-I-YANI------WHSSDVLEIDPA-TGTVVGVIDASALTRAVAGQVTNPE--AVLNGIAVEPGSGRIF  250 (268)
T ss_dssp             EEEEEEE-TTE-E-EEEE------TTCSEEEEECTT-TCBEEEEEECHHHHHHHTTTCCCTT--CCEEEEEECTTTCCEE
T ss_pred             ccccEEe-CCE-E-EEEE------CCCCeEEEEeCC-CCcEEEEEECCCCcccccccccCcC--CceEEEEEcCCCCEEE
Confidence            2233455 774 4 4441      345689999988 466433333321         0100  1235689999988556


Q ss_pred             EEeCCCCeeeEEEEec
Q 008927          317 VTDRKNGFWNLHKWIE  332 (548)
Q Consensus       317 ~sd~~~g~~~Ly~~d~  332 (548)
                      ++.+  -|..||.+.+
T Consensus       251 VTGK--~Wp~~~ev~~  264 (268)
T 3nok_A          251 MTGK--LWPRLFEVRL  264 (268)
T ss_dssp             EEET--TCSEEEEEEE
T ss_pred             EeCC--CCCceEEEEE
Confidence            6654  5677887754

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.02  E-value=0.014  Score=58.96  Aligned_cols=75  Identities=12%  Similarity=-0.045  Sum_probs=44.3

Q ss_pred             ceECcCCc-EEEEEeCCC-C-----eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC
Q 008927          306 PKWSSKGE-LFFVTDRKN-G-----FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (548)
Q Consensus       306 ~~wspDG~-L~~~sd~~~-g-----~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~  378 (548)
                      ..++|||+ +|+.... . +     ...+..+|++++++..-.+..    ...|     .+.+.+   |+++++++.. .
T Consensus       269 v~~s~dg~~lyV~~~~-~~~~~~~~~~~~~ViD~~t~~vv~~i~vg----~~p~-----gi~~s~---Dg~~l~va~~-~  334 (368)
T 1mda_H          269 VAKLKNTDGIMILTVE-HSRSCLAAAENTSSVTASVGQTSGPISNG----HDSD-----AIIAAQ---DGASDNYANS-A  334 (368)
T ss_dssp             EEEETTTTEEEEEEEE-CSSCTTSCEEEEEEEESSSCCEEECCEEE----EEEC-----EEEECC---SSSCEEEEEE-T
T ss_pred             eEEcCCCCEEEEEecc-ccCcccccCCCEEEEECCCCeEEEEEECC----CCcc-----eEEECC---CCCEEEEEcc-C
Confidence            57999999 6655442 2 2     234559999888754322211    1111     244554   7777776554 2


Q ss_pred             CeEEEEEEECCCCceE
Q 008927          379 GRSYLGILDDFGHSLS  394 (548)
Q Consensus       379 g~~~L~~~dl~~g~~~  394 (548)
                      +...|.++|++++++.
T Consensus       335 ~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          335 GTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             TTTEEEEEESSSCEEE
T ss_pred             CCCeEEEEECCCCcEE
Confidence            3456889999988754

>2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina}

Probab=97.02  E-value=0.00047  Score=65.75  Aligned_cols=59  Identities=14%  Similarity=0.272  Sum_probs=43.5

Q ss_pred             EEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCChh
Q 008927          477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSV  541 (548)
Q Consensus       477 g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~~  541 (548)
                      +.+|.|.+..   ..+++.|+||++||++...  ..|....+.|+++||.|+.+|+||| +...+
T Consensus        34 ~~~~~p~~~~---~~g~~~p~vv~~HG~~~~~--~~~~~~~~~l~~~G~~v~~~d~~~s-~~~~~   92 (258)
T 2fx5_A           34 CRIYRPRDLG---QGGVRHPVILWGNGTGAGP--STYAGLLSHWASHGFVVAAAETSNA-GTGRE   92 (258)
T ss_dssp             EEEEEESSTT---GGGCCEEEEEEECCTTCCG--GGGHHHHHHHHHHTCEEEEECCSCC-TTSHH
T ss_pred             EEEEeCCCCc---ccCCCceEEEEECCCCCCc--hhHHHHHHHHHhCCeEEEEecCCCC-ccHHH
Confidence            7788886411   0133789999999998643  3566778899999999999999986 44444

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=97.01  E-value=0.093  Score=57.68  Aligned_cols=289  Identities=9%  Similarity=0.011  Sum_probs=154.4

Q ss_pred             CCCCCcCCHHHHhcC-C--CccCceE-EcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCC--ccc---cc
Q 008927           73 GSWKSPLTADVVSGA-S--KRLGGTA-VDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYA--VRT---TA  142 (548)
Q Consensus        73 g~w~spit~~~l~~~-~--~~~~~~~-~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~--~r~---~v  142 (548)
                      +.|.--|.++.|... .  -.+.... ++| |+++++--++.. .....+...+..    .+++.++++.  +.+   .-
T Consensus       110 p~wevllD~d~l~~~~g~~~~~~g~~~~~~~~~~~~~~ls~~G-~d~~~~~~~d~~----t~~~~~~~~~~~~k~~~~~~  184 (711)
T 4hvt_A          110 PNWEVLIDFDKLSKKIGKKVAYRGVSNCFQNPNRYLISMSFGG-KDEMFFREWDLE----KKDFVKNGFEPITNSGKLLE  184 (711)
T ss_dssp             CCCEEEEEHHHHHHHHTSCEEEEEEEECSSSTTEEEEEEEETT-CSEEEEEEEETT----TTEECTTCSCCBCTTCCBCC
T ss_pred             CCcEEEeccccccccCCCcEEEeceeecCCCCCEEEEEeCCCC-CceeEEEEEECC----cCCcCCCCcccccccccccc
Confidence            467777889999865 3  3567777 788 888777654421 223445555443    3344444433  111   00


Q ss_pred             eeeCCeeeEEECCEEEEEeC-C---------CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCE---EEEEE
Q 008927          143 QEYGGGAFRIFGDTVIFSNY-K---------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR---YVTVR  209 (548)
Q Consensus       143 ~~ygg~~~~~~~~~i~F~~~-~---------~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~---i~~v~  209 (548)
                      ..|++.+|. |++.++|..+ .         ..++|+..+.+...+.+.|-.... ... +.....++|++.   ++++.
T Consensus       185 ~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~-~~~-~~~~~~~~~~~~~~~~~~i~  261 (711)
T 4hvt_A          185 GKFTYPTWI-NKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPK-EYI-YVSAGKLLSDTISSSLIFIS  261 (711)
T ss_dssp             EETCCEEEE-ETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCT-TSC-EEEEEESSCTTTCSSEEEEE
T ss_pred             cccceeeEE-CCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCC-Cce-EEEEEEecCCCceEEEEEEE
Confidence            012334775 8888888632 1         136888887542123344433321 122 334557778774   23443


Q ss_pred             eccCCCCCCceeEEEEEECCC--CCccCcEEeeecCCceeeeEECCCCCEEEEEE--ecCCCCCCCCceEEEEEecCC--
Q 008927          210 EDRRQDALNSTTEIVAIALNG--QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE--WHHPNMPWDKAELWVGYISEN--  283 (548)
Q Consensus       210 ~~~~~~~~~~~~~l~~idl~~--g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~--~~~~~~p~~~~~L~v~~~~~~--  283 (548)
                      ....    ...+++|.++++.  ++   ...|....+.  .+..+++|+.++++.  |...+.......|++++++..  
T Consensus       262 ~~~~----~~~~~~~~~~~~~~~~~---~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  332 (711)
T 4hvt_A          262 ANKD----FYNYDNYILDTKYKNLK---LQKINMPSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLK  332 (711)
T ss_dssp             EESS----SSCEEEEEEECSSSSCE---EEECCSCTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGS
T ss_pred             Eecc----cCceeEEEEcCCCCCCc---ceEeecCCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccc
Confidence            2211    1347899999875  33   4555433332  234566665443332  211100012567999999741  


Q ss_pred             C---ceeeeE-EEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCe--eEe-ec-ccccccCCCccccc
Q 008927          284 G---DVYKRV-CVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE--VLA-IY-SLDAEFSRPLWVFG  355 (548)
Q Consensus       284 g---~~~~~~-~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~--~~~-l~-~~~~d~~~p~w~~~  355 (548)
                      |   + .+.+ +++... +  ..+..+.|..| .|++.... .+...|+++++.+|+  .+. +. +....+.       
T Consensus       333 ~~~~~-~~~~~~~~~~~-~--~~l~~~~~~~~-~l~~~~~~-~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~-------  399 (711)
T 4hvt_A          333 TESDK-TSLKILFTPTA-N--EVFNFISTTKD-RVFLATYD-NVVAKVVTFTLENEQWTKPVVLKLPYQNAIF-------  399 (711)
T ss_dssp             CGGGC-TTCEEEECCCT-T--EEEEEEEECSS-CEEEEEEE-TTEEEEEEECEETTEECCCEEECCCSTTCEE-------
T ss_pred             ccccc-ccceEEECCCC-C--CeEEEEEEECC-EEEEEEEE-CCEEEEEEEECCCCceEEEeccCCCCCeEEE-------
Confidence            1   1 1222 354433 2  56677888876 47776665 788899999987775  344 32 1111000       


Q ss_pred             CcceeeeeecCCCCEEEEEEEe-CCeEEEEEEECCCCceEeec
Q 008927          356 INSYEIIQSHGEKNLIACSYRQ-NGRSYLGILDDFGHSLSLLD  397 (548)
Q Consensus       356 ~~~~~~~~~~~d~~~l~~~~~~-~g~~~L~~~dl~~g~~~~l~  397 (548)
                        .....+   +++.+++.... .....+|.+|+. ++.+.|.
T Consensus       400 --~~~~~~---~~~~~~~~~ss~~~P~~~~~~d~~-~~~~~l~  436 (711)
T 4hvt_A          400 --GMSSYE---EEEEALITIENSIVPPTIYLWVKT-HELKIIR  436 (711)
T ss_dssp             --EEECCT---TCSCEEEEEECSSSCCEEEEECTT-SCEEEEE
T ss_pred             --EEeecC---cCCEEEEEEecCCCCCEEEEEeCC-CcEEEEe
Confidence              011111   56667766653 356689999987 7776665

>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*

Probab=96.98  E-value=0.00031  Score=72.22  Aligned_cols=73  Identities=15%  Similarity=0.084  Sum_probs=51.6

Q ss_pred             ccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcE----EEEeCCC
Q 008927          458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWA----FVDVNYG  533 (548)
Q Consensus       458 ~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGya----Vl~~NyR  533 (548)
                      ..+.+.++|.|...|.++..++|.|.+  ++   ++++|+|+++||+-+... ..+....+.|+++|++    |+.+|++
T Consensus       165 ~G~v~~~~~~S~~~g~~~~~~vy~P~~--~~---~~~~PvlvllHG~~~~~~-~~~~~~~~~l~~~g~~~p~iVV~~d~~  238 (403)
T 3c8d_A          165 EIPAKEIIWKSERLKNSRRVWIFTTGD--VT---AEERPLAVLLDGEFWAQS-MPVWPVLTSLTHRQQLPPAVYVLIDAI  238 (403)
T ss_dssp             SSCCEEEEEEETTTTEEEEEEEEEC----------CCCCEEEESSHHHHHHT-SCCHHHHHHHHHTTSSCSCEEEEECCC
T ss_pred             CCceEEEEEEccccCCcEEEEEEeCCC--CC---CCCCCEEEEeCCHHHhhc-CcHHHHHHHHHHcCCCCCeEEEEECCC
Confidence            345678888875467889999999964  42   578999999999643322 1233457889999986    9999998


Q ss_pred             CCC
Q 008927          534 GST  536 (548)
Q Consensus       534 GSt  536 (548)
                      |+.
T Consensus       239 ~~~  241 (403)
T 3c8d_A          239 DTT  241 (403)
T ss_dssp             SHH
T ss_pred             CCc
Confidence            743

>1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32

Probab=96.96  E-value=0.00032  Score=67.43  Aligned_cols=47  Identities=15%  Similarity=0.159  Sum_probs=36.4

Q ss_pred             CCCCcEEEEEccCcccc---ccCccChHHHHH----HhcCcEEEEeCCCCCCCC
Q 008927          492 EEKPPLLVKSHGGPTSE---ARGILNLSIQYW----TSRGWAFVDVNYGGSTGL  538 (548)
Q Consensus       492 ~~~~Pliv~iHGGP~~~---~~~~~~~~~Q~~----asrGyaVl~~NyRGStGy  538 (548)
                      +++.|+||++|||+...   ....|....+.|    +++||.|+.+|||++...
T Consensus        38 ~~~~p~vv~lHGgg~~~g~~~~~~~~~~~~~L~~~a~~~g~~vi~~d~r~~~~~   91 (273)
T 1vkh_A           38 QNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEI   91 (273)
T ss_dssp             TTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTS
T ss_pred             CCCCeEEEEECCCcccCCcCChHHHHHHHHHHhhhhccCCcEEEEeecccCCCC
Confidence            45679999999998543   333455667778    689999999999998754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.96  E-value=0.36  Score=49.16  Aligned_cols=227  Identities=11%  Similarity=0.084  Sum_probs=119.4

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      ++.++++.|+.. ..++.|.+.++..  ++.. .+...    ...+..+.|  |++.|+....+         ..|.++|
T Consensus       138 ~~~~d~~~l~~g-~~dg~i~iwd~~~--~~~~~~~~~h----~~~v~~l~~--~~~~l~sg~~d---------g~i~vwd  199 (435)
T 1p22_A          138 CLQYDDQKIVSG-LRDNTIKIWDKNT--LECKRILTGH----TGSVLCLQY--DERVIITGSSD---------STVRVWD  199 (435)
T ss_dssp             EEECCSSEEEEE-ESSSCEEEEESSS--CCEEEEECCC----SSCEEEEEC--CSSEEEEEETT---------SCEEEEE
T ss_pred             EEEECCCEEEEE-eCCCeEEEEeCCC--CeEEEEEcCC----CCcEEEEEE--CCCEEEEEcCC---------CeEEEEE
Confidence            344455555544 3567788888876  4443 33332    123444444  78876665433         3588889


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      +.+++.  ...+......+....|+  +..|+-.. .       ...|.+.++...........+.+..    ..+....
T Consensus       200 ~~~~~~--~~~~~~h~~~v~~l~~~--~~~l~s~s-~-------dg~i~vwd~~~~~~~~~~~~~~~~~----~~v~~~~  263 (435)
T 1p22_A          200 VNTGEM--LNTLIHHCEAVLHLRFN--NGMMVTCS-K-------DRSIAVWDMASPTDITLRRVLVGHR----AAVNVVD  263 (435)
T ss_dssp             SSSCCE--EEEECCCCSCEEEEECC--TTEEEEEE-T-------TSCEEEEECSSSSCCEEEEEECCCS----SCEEEEE
T ss_pred             CCCCcE--EEEEcCCCCcEEEEEEc--CCEEEEee-C-------CCcEEEEeCCCCCCceeeeEecCCC----CcEEEEE
Confidence            998872  23333333445555665  44555333 1       3468888987533221123344432    3455566


Q ss_pred             ECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (548)
Q Consensus       308 wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d  387 (548)
                      |  ||++++.... +|  .|..+|+.+++.......     ....   .....+     +++.|+ +...++  .|.++|
T Consensus       264 ~--~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~-----~~~~---v~~~~~-----~~~~l~-~g~~dg--~i~iwd  322 (435)
T 1p22_A          264 F--DDKYIVSASG-DR--TIKVWNTSTCEFVRTLNG-----HKRG---IACLQY-----RDRLVV-SGSSDN--TIRLWD  322 (435)
T ss_dssp             E--ETTEEEEEET-TS--EEEEEETTTCCEEEEEEC-----CSSC---EEEEEE-----ETTEEE-EEETTS--CEEEEE
T ss_pred             e--CCCEEEEEeC-CC--eEEEEECCcCcEEEEEcC-----CCCc---EEEEEe-----CCCEEE-EEeCCC--eEEEEE
Confidence            6  7775555444 34  567778777765332211     0011   111233     345443 444444  466778


Q ss_pred             CCCCceE-eecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCC
Q 008927          388 DFGHSLS-LLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDH  434 (548)
Q Consensus       388 l~~g~~~-~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~  434 (548)
                      +.+++.. .+......+..+..+++.++ +++.   ...|.++|+.++
T Consensus       323 ~~~~~~~~~~~~h~~~v~~~~~~~~~l~-sg~~---dg~i~vwd~~~~  366 (435)
T 1p22_A          323 IECGACLRVLEGHEELVRCIRFDNKRIV-SGAY---DGKIKVWDLVAA  366 (435)
T ss_dssp             TTTCCEEEEECCCSSCEEEEECCSSEEE-EEET---TSCEEEEEHHHH
T ss_pred             CCCCCEEEEEeCCcCcEEEEEecCCEEE-EEeC---CCcEEEEECCCC
Confidence            8877643 44433334555555666544 3332   256888887543

>1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21

Probab=96.95  E-value=0.00083  Score=74.82  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.1

Q ss_pred             HHHHHHhcCcEEEEeCCCCCCC
Q 008927          516 SIQYWTSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       516 ~~Q~~asrGyaVl~~NyRGStG  537 (548)
                      ..++|+++||+|+.+|+||+.+
T Consensus       273 ~~~~la~~GYaVv~~D~RG~G~  294 (763)
T 1lns_A          273 LNDYFLTRGFASIYVAGVGTRS  294 (763)
T ss_dssp             HHHHHHTTTCEEEEECCTTSTT
T ss_pred             hHHHHHHCCCEEEEECCCcCCC
Confidence            3599999999999999999543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=96.93  E-value=0.0099  Score=58.27  Aligned_cols=247  Identities=11%  Similarity=-0.003  Sum_probs=118.8

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCC---cccCCCCCCccccceeeCCeeeEEE-CCEEEEEeCC
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEP---SDITPKEYAVRTTAQEYGGGAFRIF-GDTVIFSNYK  163 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~---~~lt~~~~~~r~~v~~ygg~~~~~~-~~~i~F~~~~  163 (548)
                      ..+..++++| |+.++--.    .++...||.....   ..   ..+....-.+.       .-.|+++ ++.++.+...
T Consensus        14 ~~V~~v~~s~~g~~lasgs----~D~~v~lwd~~~~---~~~~~~~l~gH~~~V~-------~v~~~~~~~~~~l~s~s~   79 (316)
T 3bg1_A           14 DMIHDAQMDYYGTRLATCS----SDRSVKIFDVRNG---GQILIADLRGHEGPVW-------QVAWAHPMYGNILASCSY   79 (316)
T ss_dssp             CCEEEEEECGGGCEEEEEE----TTTEEEEEEEETT---EEEEEEEEECCSSCEE-------EEEECCGGGSSCEEEEET
T ss_pred             CeEEEeeEcCCCCEEEEEe----CCCeEEEEEecCC---CcEEEEEEcCCCccEE-------EEEeCCCCCCCEEEEEEC
Confidence            4567788888 77654432    2466677765332   11   11211111111       1134432 2334445556


Q ss_pred             CCeEEEEeCCCCCCCce---ecCCCCCCCCceecceeeCCC--CCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE
Q 008927          164 DQRLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV  238 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~~~---~lT~~~~~~~~~~~~~~~SpD--G~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~  238 (548)
                      |+.|.+-++..  ++.+   .+...    ...+....|+|+  |..|+....+         ..|.++|+.++..  ...
T Consensus        80 D~~v~iWd~~~--~~~~~~~~~~~h----~~~V~~v~~~p~~~g~~lasgs~D---------~~i~lwd~~~~~~--~~~  142 (316)
T 3bg1_A           80 DRKVIIWREEN--GTWEKSHEHAGH----DSSVNSVCWAPHDYGLILACGSSD---------GAISLLTYTGEGQ--WEV  142 (316)
T ss_dssp             TSCEEEECCSS--SCCCEEEEECCC----SSCCCEEEECCTTTCSCEEEECSS---------SCEEEEEECSSSC--EEE
T ss_pred             CCEEEEEECCC--CcceEEEEccCC----CCceEEEEECCCCCCcEEEEEcCC---------CCEEEEecCCCCC--cce
Confidence            67677777765  4322   22222    224567789998  6666554333         2466667766530  111


Q ss_pred             ee--e-cCCceeeeEECCCC-----------------CEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCC
Q 008927          239 LV--S-GSDFYAFPRMDPRG-----------------ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT  298 (548)
Q Consensus       239 L~--~-~~~~~~~p~~SPDG-----------------k~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~  298 (548)
                      +.  . .........|+|++                 +.|+ .. .      ....|.+.++...+.......+.+..  
T Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sg-s------~D~~v~lWd~~~~~~~~~~~~l~~h~--  212 (316)
T 3bg1_A          143 KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA-SG-G------CDNLIKLWKEEEDGQWKEEQKLEAHS--  212 (316)
T ss_dssp             CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEE-CC-B------TTSBCCEEEECTTSCEEEEECCBCCS--
T ss_pred             eeeeccccCCcceEEEccccCCccccccccccCccccceEE-Ee-c------CCCeEEEEEeCCCCccceeeecccCC--
Confidence            11  1 12224456788883                 4444 21 1      12345566665333221222233332  


Q ss_pred             cccCCcCceECcCC----cEEEEEeCCCCeeeEEEEeccCC---ee--EeecccccccCCCcccccCcceeeeeecCCCC
Q 008927          299 IVESPTEPKWSSKG----ELFFVTDRKNGFWNLHKWIESNN---EV--LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKN  369 (548)
Q Consensus       299 ~~~~~~~~~wspDG----~L~~~sd~~~g~~~Ly~~d~~~g---~~--~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~  369 (548)
                        ..+....|+||+    ++++.... ++.-.||  ++++.   +.  +.+.    .+..+.|     ...|.|   +++
T Consensus       213 --~~V~~v~~sp~~~~~~~~las~s~-D~~v~iw--~~~~~~~~~~~~~~~~----~~~~~v~-----~v~~sp---~g~  275 (316)
T 3bg1_A          213 --DWVRDVAWAPSIGLPTSTIASCSQ-DGRVFIW--TCDDASSNTWSPKLLH----KFNDVVW-----HVSWSI---TAN  275 (316)
T ss_dssp             --SCEEEEECCCCSSCSCCEEEEEET-TCEEEEE--ECSSTTCCCCBCCEEE----ECSSCEE-----EEEECT---TTC
T ss_pred             --CceEEEEecCCCCCCCceEEEEcC-CCeEEEE--EccCccccchhhhhhh----cCCCcEE-----EEEEcC---CCC
Confidence              457788999997    55555544 5554454  44432   11  1121    1111222     245654   555


Q ss_pred             EEEEEEEeCCeEEEEEEECCCCceEe
Q 008927          370 LIACSYRQNGRSYLGILDDFGHSLSL  395 (548)
Q Consensus       370 ~l~~~~~~~g~~~L~~~dl~~g~~~~  395 (548)
                      .| ++...++.-+||..+.+ |+++.
T Consensus       276 ~l-as~~~D~~v~lw~~~~~-g~~~~  299 (316)
T 3bg1_A          276 IL-AVSGGDNKVTLWKESVD-GQWVC  299 (316)
T ss_dssp             CE-EEEESSSCEEEEEECTT-SCEEE
T ss_pred             EE-EEEcCCCeEEEEEECCC-CcEEE
Confidence            44 45566777777766543 44443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=96.92  E-value=0.059  Score=51.44  Aligned_cols=144  Identities=10%  Similarity=0.095  Sum_probs=78.7

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccC
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~  235 (548)
                      .|++....++.|++++.++  ...+.+....  .......+.++|||+ | ++....       ...|+++|.++..   
T Consensus       133 ~l~v~~~~~~~i~~~~~~g--~~~~~~~~~~--~~~~p~~i~~~~~g~-l-~v~~~~-------~~~i~~~~~~g~~---  196 (286)
T 1q7f_A          133 RIIVVECKVMRVIIFDQNG--NVLHKFGCSK--HLEFPNGVVVNDKQE-I-FISDNR-------AHCVKVFNYEGQY---  196 (286)
T ss_dssp             CEEEEETTTTEEEEECTTS--CEEEEEECTT--TCSSEEEEEECSSSE-E-EEEEGG-------GTEEEEEETTCCE---
T ss_pred             CEEEEECCCCEEEEEcCCC--CEEEEeCCCC--ccCCcEEEEECCCCC-E-EEEECC-------CCEEEEEcCCCCE---
Confidence            5777776677899999765  3333332110  011244678999987 3 333321       2479999986654   


Q ss_pred             cEEeeecC--CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc
Q 008927          236 PKVLVSGS--DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (548)
Q Consensus       236 ~~~L~~~~--~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~  313 (548)
                      ...+....  .......++|||+ | |++...     .+..|.+++.+  |+.  ...+......  .....+.++|||+
T Consensus       197 ~~~~~~~g~~~~p~~i~~d~~G~-l-~v~~~~-----~~~~i~~~~~~--g~~--~~~~~~~~~~--~~~~~i~~~~~g~  263 (286)
T 1q7f_A          197 LRQIGGEGITNYPIGVGINSNGE-I-LIADNH-----NNFNLTIFTQD--GQL--ISALESKVKH--AQCFDVALMDDGS  263 (286)
T ss_dssp             EEEESCTTTSCSEEEEEECTTCC-E-EEEECS-----SSCEEEEECTT--SCE--EEEEEESSCC--SCEEEEEEETTTE
T ss_pred             EEEEccCCccCCCcEEEECCCCC-E-EEEeCC-----CCEEEEEECCC--CCE--EEEEcccCCC--CcceeEEECCCCc
Confidence            44443221  2344568999996 4 344211     11378888854  432  2222221101  2244678999998


Q ss_pred             EEEEEeCCCCeeeEEEE
Q 008927          314 LFFVTDRKNGFWNLHKW  330 (548)
Q Consensus       314 L~~~sd~~~g~~~Ly~~  330 (548)
                      ||+. +. ++.-.+|.+
T Consensus       264 l~vs-~~-~~~v~v~~~  278 (286)
T 1q7f_A          264 VVLA-SK-DYRLYIYRY  278 (286)
T ss_dssp             EEEE-ET-TTEEEEEEC
T ss_pred             EEEE-CC-CCeEEEEEc
Confidence            6665 55 554444443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.91  E-value=0.03  Score=55.87  Aligned_cols=166  Identities=16%  Similarity=0.091  Sum_probs=77.9

Q ss_pred             CHHHHhcCCCccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccC--CCCCCccccceeeC--CeeeEEE--
Q 008927           80 TADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT--PKEYAVRTTAQEYG--GGAFRIF--  153 (548)
Q Consensus        80 t~~~l~~~~~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt--~~~~~~r~~v~~yg--g~~~~~~--  153 (548)
                      +++.+...-.....+.+.|++++|..|..   .|+  |++++.++ +....+.  +.-+ .. .  +.|  |-++.|+  
T Consensus        23 ~~~~va~gL~~P~~ia~~pdG~llVter~---~G~--I~~v~~~~-g~~~~v~~~~~v~-~~-g--~~GllGia~~Pdf~   92 (347)
T 3das_A           23 VLRTVATGLNSPWGLAPLPGGDLLVSSRD---EAT--ITRVDAKT-GRKTELGEVPGVS-PS-G--EGGLLGIALSPDYA   92 (347)
T ss_dssp             EEEEEECCCSSEEEEEECTTSCEEEEETT---TCE--EEEECTTT-CCEEEEEECTTCC-CB-T--TBSEEEEEECTTHH
T ss_pred             eeEEeecCCCCceEEEEcCCCcEEEEEec---CCE--EEEEECCC-CcEeeecccCcee-ec-C--CCCceeeEeccccc
Confidence            34444443245567788885567776631   354  55554432 2333221  1100 00 0  111  1233332  


Q ss_pred             -CCEEEEE--eCCCCeEEEEeCCCCC------CCceecCC-CCCCCCceecceeeCCCCCEEEEEEeccCC-----CCCC
Q 008927          154 -GDTVIFS--NYKDQRLYKHSIDSKD------SSPLPITP-DYGEPLVSYADGIFDPRFNRYVTVREDRRQ-----DALN  218 (548)
Q Consensus       154 -~~~i~F~--~~~~~~Ly~~~~~~~~------~~~~~lT~-~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~-----~~~~  218 (548)
                       ++.||+.  .....+|+++.+++++      .+++.|.. ......-.-..+.|+|||. |++...+...     ....
T Consensus        93 ~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~  171 (347)
T 3das_A           93 SDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKS  171 (347)
T ss_dssp             HHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTC
T ss_pred             cCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCC
Confidence             4555543  3345689999887511      12232211 1100011123578999996 4333222110     1112


Q ss_pred             ceeEEEEEECCCCCcc-----CcEEeeecCCceeeeEECCCCC
Q 008927          219 STTEIVAIALNGQNIQ-----EPKVLVSGSDFYAFPRMDPRGE  256 (548)
Q Consensus       219 ~~~~l~~idl~~g~~~-----~~~~L~~~~~~~~~p~~SPDGk  256 (548)
                      ....|++++.++.-..     ..+++..+...-...+|+|+|+
T Consensus       172 ~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~  214 (347)
T 3das_A          172 LGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR  214 (347)
T ss_dssp             STTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC
T ss_pred             CCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC
Confidence            3568999999876100     0345555544444567888876

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.87  E-value=0.04  Score=54.04  Aligned_cols=166  Identities=8%  Similarity=0.011  Sum_probs=89.5

Q ss_pred             CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCC-CceecceeeCC-CCCEEEEEEeccCC-CC---------CCcee
Q 008927          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEP-LVSYADGIFDP-RFNRYVTVREDRRQ-DA---------LNSTT  221 (548)
Q Consensus       154 ~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~-~~~~~~~~~Sp-DG~~i~~v~~~~~~-~~---------~~~~~  221 (548)
                      ++.|+..+.. ..|++++.++  ++.+.+....... .....++.++| +|. |++. ..... ..         .....
T Consensus        91 ~g~l~v~d~~-~~i~~~d~~~--g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~-d~~~~~~~~~~~~~~~~~~~~g  165 (322)
T 2fp8_A           91 NNQLYIVDCY-YHLSVVGSEG--GHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFT-DVSTLYDDRGVQQIMDTSDKTG  165 (322)
T ss_dssp             TTEEEEEETT-TEEEEECTTC--EECEEEESEETTEECSCEEEEEECTTTCC-EEEE-ESCSSCCTTCHHHHHHHTCCCE
T ss_pred             CCcEEEEECC-CCEEEEeCCC--CEEEEecccCCCCcccccceEEEecCCCE-EEEE-CCcccccccccceehcccCCCc
Confidence            4577776533 4599998876  5555543211000 11245678999 886 4443 32100 00         01236


Q ss_pred             EEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCccc
Q 008927          222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE  301 (548)
Q Consensus       222 ~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~  301 (548)
                      .|+++|.++++   .+.+..+...-....|+|||+.|++...       ....|++++++. +.......+....    .
T Consensus       166 ~v~~~d~~~~~---~~~~~~~~~~p~gia~~~dg~~lyv~d~-------~~~~I~~~~~~~-~~~~~~~~~~~~~----g  230 (322)
T 2fp8_A          166 RLIKYDPSTKE---TTLLLKELHVPGGAEVSADSSFVLVAEF-------LSHQIVKYWLEG-PKKGTAEVLVKIP----N  230 (322)
T ss_dssp             EEEEEETTTTE---EEEEEEEESCCCEEEECTTSSEEEEEEG-------GGTEEEEEESSS-TTTTCEEEEEECS----S
T ss_pred             eEEEEeCCCCE---EEEeccCCccCcceEECCCCCEEEEEeC-------CCCeEEEEECCC-CcCCccceEEeCC----C
Confidence            79999998887   5555433222334589999997754432       135799999873 2111122222111    2


Q ss_pred             CCcCceECcCCcEEEEEeCC-C-----C-eeeEEEEeccCCeeEee
Q 008927          302 SPTEPKWSSKGELFFVTDRK-N-----G-FWNLHKWIESNNEVLAI  340 (548)
Q Consensus       302 ~~~~~~wspDG~L~~~sd~~-~-----g-~~~Ly~~d~~~g~~~~l  340 (548)
                       ......++||+||+..... .     + ...|++++.++...+.+
T Consensus       231 -P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~  275 (322)
T 2fp8_A          231 -PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVI  275 (322)
T ss_dssp             -EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEE
T ss_pred             -CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEE
Confidence             3345778899865553220 1     1 35699999854333333

>3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A

Probab=96.86  E-value=0.00072  Score=67.03  Aligned_cols=47  Identities=9%  Similarity=0.051  Sum_probs=33.6

Q ss_pred             CCCcEEEEEccCcccc-ccCccChHHHHHHhc-CcEEEEeCCCCCCCCC
Q 008927          493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSR-GWAFVDVNYGGSTGLS  539 (548)
Q Consensus       493 ~~~Pliv~iHGGP~~~-~~~~~~~~~Q~~asr-GyaVl~~NyRGStGyG  539 (548)
                      .++|+||++|||.... ....+......|+.+ ||+|+.+||||+....
T Consensus        78 ~~~~~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~dyr~~~~~~  126 (322)
T 3k6k_A           78 AGAAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRLAPENP  126 (322)
T ss_dssp             CCSCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTCEEEEECCCCTTTSC
T ss_pred             CCCeEEEEEcCCcccCCChHHHHHHHHHHHHhcCCEEEEeeCCCCCCCC
Confidence            4556699999997432 223344556677765 9999999999987653

>1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16

Probab=96.85  E-value=0.0013  Score=62.73  Aligned_cols=71  Identities=11%  Similarity=0.097  Sum_probs=49.6

Q ss_pred             eEEEeecc-CCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCCh
Q 008927          462 ELIEFPTE-VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSS  540 (548)
Q Consensus       462 e~i~~~s~-~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~  540 (548)
                      +.+++++. ++|.. .+.||.|...     +.++.|+||++||+.....  .|....+.|+++||.|+.+|+||......
T Consensus        26 ~~~~~~~~~~~~~~-~~~l~~p~~~-----~~~~~p~vv~~HG~~~~~~--~~~~~~~~l~~~G~~v~~~d~~g~g~~~~   97 (262)
T 1jfr_A           26 SQTSVSSLVASGFG-GGTIYYPTST-----ADGTFGAVVISPGFTAYQS--SIAWLGPRLASQGFVVFTIDTNTTLDQPD   97 (262)
T ss_dssp             EEEEECTTTCSSSC-CEEEEEESCC-----TTCCEEEEEEECCTTCCGG--GTTTHHHHHHTTTCEEEEECCSSTTCCHH
T ss_pred             cceEecceeccCCC-ceeEEecCCC-----CCCCCCEEEEeCCcCCCch--hHHHHHHHHHhCCCEEEEeCCCCCCCCCc
Confidence            44555543 23332 5677778531     1346799999999875443  56677889999999999999998766543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.81  E-value=0.13  Score=50.38  Aligned_cols=114  Identities=13%  Similarity=0.114  Sum_probs=60.0

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee--cCCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (548)
Q Consensus       193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~--~~~~~~~p~~SPDGk~La~~~~~~~~~p~  270 (548)
                      +..+.|+|+  .|+....+         ..|.++|+.++.......+..  ..+.+....|+|||+.|+-.+.       
T Consensus        17 v~~~~~s~~--~las~~~D---------~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-------   78 (330)
T 2hes_X           17 IWSFDFSQG--ILATGSTD---------RKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF-------   78 (330)
T ss_dssp             EEEEEEETT--EEEEEESS---------SCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET-------
T ss_pred             eeeeccCCC--EEEEEcCC---------CEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC-------
Confidence            455678887  44443322         247777887754100122312  2334667889999998874442       


Q ss_pred             CCceEEEEEecCCC----ceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEec
Q 008927          271 DKAELWVGYISENG----DVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE  332 (548)
Q Consensus       271 ~~~~L~v~~~~~~g----~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~  332 (548)
                       ...|.+.+++...    .......+.+..    ..+....|+|||++++.... ++.  |..+|+
T Consensus        79 -D~~v~iw~~~~~~~~~~~~~~~~~~~~h~----~~V~~v~~sp~g~~las~s~-D~~--v~iwd~  136 (330)
T 2hes_X           79 -DSTVSIWAKEESADRTFEMDLLAIIEGHE----NEVKGVAWSNDGYYLATCSR-DKS--VWIWET  136 (330)
T ss_dssp             -TSCEEEEEC-------CCCEEEEEEC--------CEEEEEECTTSCEEEEEET-TSC--EEEEEC
T ss_pred             -CCcEEEEEcccCcCccccceeEEEEcCCC----CcEEEEEECCCCCEEEEEeC-CCE--EEEEec
Confidence             2346666764211    111123344433    45778999999995555544 454  444554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.80  E-value=0.56  Score=47.76  Aligned_cols=227  Identities=11%  Similarity=0.099  Sum_probs=114.9

Q ss_pred             eEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      ..++++.|+.. ..++.|.+.++..  ++.. .+...    ......+.+  +|+.|+....+         ..|.++|+
T Consensus       205 ~~~~~~~l~s~-s~dg~i~~wd~~~--~~~~~~~~~~----~~~v~~~~~--~~~~l~~~~~d---------g~i~iwd~  266 (445)
T 2ovr_B          205 MHLHEKRVVSG-SRDATLRVWDIET--GQCLHVLMGH----VAAVRCVQY--DGRRVVSGAYD---------FMVKVWDP  266 (445)
T ss_dssp             EEEETTEEEEE-ETTSEEEEEESSS--CCEEEEEECC----SSCEEEEEE--CSSCEEEEETT---------SCEEEEEG
T ss_pred             EEecCCEEEEE-eCCCEEEEEECCC--CcEEEEEcCC----cccEEEEEE--CCCEEEEEcCC---------CEEEEEEC
Confidence            44566665443 4677888888876  4433 33222    122334445  77776665333         35888898


Q ss_pred             CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      .+++.  ...+...........|  ||+.|+....        ...|.+.|+.. ++  ....+.+..    ..+.  .+
T Consensus       267 ~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~~~~--------d~~i~i~d~~~-~~--~~~~~~~~~----~~v~--~~  325 (445)
T 2ovr_B          267 ETETC--LHTLQGHTNRVYSLQF--DGIHVVSGSL--------DTSIRVWDVET-GN--CIHTLTGHQ----SLTS--GM  325 (445)
T ss_dssp             GGTEE--EEEECCCSSCEEEEEE--CSSEEEEEET--------TSCEEEEETTT-CC--EEEEECCCC----SCEE--EE
T ss_pred             CCCcE--eEEecCCCCceEEEEE--CCCEEEEEeC--------CCeEEEEECCC-CC--EEEEEcCCc----ccEE--EE
Confidence            88761  2233323333444455  8888774441        34688999874 43  233344322    2233  34


Q ss_pred             CcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEEC
Q 008927          309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (548)
Q Consensus       309 spDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl  388 (548)
                      ++++++++.... +|  .|..+|+.+++.............+     .....+     +++.| ++...+|  .|.++|+
T Consensus       326 ~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~-----v~~~~~-----~~~~l-~s~~~dg--~v~iwd~  389 (445)
T 2ovr_B          326 ELKDNILVSGNA-DS--TVKIWDIKTGQCLQTLQGPNKHQSA-----VTCLQF-----NKNFV-ITSSDDG--TVKLWDL  389 (445)
T ss_dssp             EEETTEEEEEET-TS--CEEEEETTTCCEEEEECSTTSCSSC-----EEEEEE-----CSSEE-EEEETTS--EEEEEET
T ss_pred             EEeCCEEEEEeC-CC--eEEEEECCCCcEEEEEccCCCCCCC-----EEEEEE-----CCCEE-EEEeCCC--eEEEEEC
Confidence            456775555444 44  4666777776643322111001111     112333     44444 4555555  4666788


Q ss_pred             CCCceE-eec-----CCCceeEee--eecCCEEEEEEecC-CCCCeEEEEEcC
Q 008927          389 FGHSLS-LLD-----IPFTDIDNI--TLGNDCLFVEGASG-VEPSSVAKVTLD  432 (548)
Q Consensus       389 ~~g~~~-~l~-----~~~~~~~~~--s~d~~~l~~~~ss~-~~p~~l~~~d~~  432 (548)
                      .+++.. .+.     .....+..+  ++++ .++++++.. .....|+++|.+
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          390 KTGEFIRNLVTLESGGSGGVVWRIRASNTK-LVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             TTCCEEEEEEECTTGGGTCEEEEEEECSSE-EEEEEECSSSSSCCEEEEEECC
T ss_pred             CCCceeeeeeccccCCCCceEEEEEecCCE-EEEEEcccCCCCccEEEEEECC
Confidence            887643 341     112234444  3333 343444332 235677888864

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.79  E-value=0.019  Score=59.33  Aligned_cols=160  Identities=8%  Similarity=-0.073  Sum_probs=85.8

Q ss_pred             eeEEECCEEEE---EeCCCCeEEEEeCCCC-CC--Cc-e---ecCCCCCCCCceecceeeCCC-CCEEEEEEeccCCCCC
Q 008927          149 AFRIFGDTVIF---SNYKDQRLYKHSIDSK-DS--SP-L---PITPDYGEPLVSYADGIFDPR-FNRYVTVREDRRQDAL  217 (548)
Q Consensus       149 ~~~~~~~~i~F---~~~~~~~Ly~~~~~~~-~~--~~-~---~lT~~~~~~~~~~~~~~~SpD-G~~i~~v~~~~~~~~~  217 (548)
                      +|++++..|+.   +...++.|.+.++... .+  +. +   .+....+ ....+..+.|+|+ ++.|+....+      
T Consensus        99 ~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~las~s~D------  171 (434)
T 2oit_A           99 ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD-AGGMVIDMKWNPTVPSMVAVCLAD------  171 (434)
T ss_dssp             EECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS-GGGSEEEEEECSSCTTEEEEEETT------
T ss_pred             EEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCC-CCCceEEEEECCCCCCEEEEEECC------
Confidence            57777777765   4445666777776431 00  11 1   1111100 1234667889998 5665554333      


Q ss_pred             CceeEEEEEECCCCCccCcEEeeec-CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCC
Q 008927          218 NSTTEIVAIALNGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD  296 (548)
Q Consensus       218 ~~~~~l~~idl~~g~~~~~~~L~~~-~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~  296 (548)
                         ..|.++|+.++.   ......+ ...+....|||||++|+-...        ...|.+.++.  ++  ....+....
T Consensus       172 ---g~v~iwD~~~~~---~~~~~~~~~~~v~~v~wspdg~~lasgs~--------dg~v~iwd~~--~~--~~~~~~~~~  233 (434)
T 2oit_A          172 ---GSIAVLQVTETV---KVCATLPSTVAVTSVCWSPKGKQLAVGKQ--------NGTVVQYLPT--LQ--EKKVIPCPP  233 (434)
T ss_dssp             ---SCEEEEEESSSE---EEEEEECGGGCEEEEEECTTSSCEEEEET--------TSCEEEECTT--CC--EEEEECCCT
T ss_pred             ---CeEEEEEcCCCc---ceeeccCCCCceeEEEEcCCCCEEEEEcC--------CCcEEEEccC--Cc--ccccccCCc
Confidence               358888998875   3222222 334667799999999985441        2468888876  22  122222211


Q ss_pred             C-C--cccCCcCceECcCCcEEEE-EeCCCCe----eeEEEEeccC
Q 008927          297 P-T--IVESPTEPKWSSKGELFFV-TDRKNGF----WNLHKWIESN  334 (548)
Q Consensus       297 ~-~--~~~~~~~~~wspDG~L~~~-sd~~~g~----~~Ly~~d~~~  334 (548)
                      . .  ....+....|++++.+++. +.. +|.    ..++.+++..
T Consensus       234 ~~~~~~~~~v~~v~w~~~~~~l~~~~~~-dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          234 FYESDHPVRVLDVLWIGTYVFAIVYAAA-DGTLETSPDVVMALLPK  278 (434)
T ss_dssp             TCCTTSCEEEEEEEEEETTEEEEEEEET-TCCSSSCCEEEEEECCC
T ss_pred             ccCCCCceeEEEEEEecCceEEEEEccC-CCccCCCCceEEEEecc
Confidence            0 0  0024667899998874333 332 322    3466666543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=96.78  E-value=0.13  Score=49.42  Aligned_cols=180  Identities=9%  Similarity=-0.021  Sum_probs=91.6

Q ss_pred             eEEEEEECCCCCccCcEEeeecCC--ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCC
Q 008927          221 TEIVAIALNGQNIQEPKVLVSGSD--FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT  298 (548)
Q Consensus       221 ~~l~~idl~~g~~~~~~~L~~~~~--~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~  298 (548)
                      ..|+++|.++|+   ...-.....  ......++|||+.|+  +.        ...|+.++.+  |++  ...+.... .
T Consensus        15 ~~v~~~d~~tG~---~~w~~~~~~~~~~~~~~~~pdG~ilv--s~--------~~~V~~~d~~--G~~--~W~~~~~~-~   76 (276)
T 3no2_A           15 NKIAIINKDTKE---IVWEYPLEKGWECNSVAATKAGEILF--SY--------SKGAKMITRD--GRE--LWNIAAPA-G   76 (276)
T ss_dssp             SEEEEEETTTTE---EEEEEECCTTCCCCEEEECTTSCEEE--EC--------BSEEEEECTT--SCE--EEEEECCT-T
T ss_pred             CEEEEEECCCCe---EEEEeCCCccCCCcCeEECCCCCEEE--eC--------CCCEEEECCC--CCE--EEEEcCCC-C
Confidence            579999998887   332222221  244567899998555  32        2358888773  542  22232211 1


Q ss_pred             cccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC
Q 008927          299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (548)
Q Consensus       299 ~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~  378 (548)
                        ..+....+++||++++....  ....|+.++.++..+..+... .....+...  .....+.+   +++.| ++.  .
T Consensus        77 --~~~~~~~~~~dG~~lv~~~~--~~~~v~~vd~~Gk~l~~~~~~-~~~~~~~~~--~~~v~~~~---~G~~l-v~~--~  143 (276)
T 3no2_A           77 --CEMQTARILPDGNALVAWCG--HPSTILEVNMKGEVLSKTEFE-TGIERPHAQ--FRQINKNK---KGNYL-VPL--F  143 (276)
T ss_dssp             --CEEEEEEECTTSCEEEEEES--TTEEEEEECTTSCEEEEEEEC-CSCSSGGGS--CSCCEECT---TSCEE-EEE--T
T ss_pred             --ccccccEECCCCCEEEEecC--CCCEEEEEeCCCCEEEEEecc-CCCCccccc--ccCceECC---CCCEE-EEe--c
Confidence              23456778999995554321  135788888754433333211 111111100  11122332   55544 333  2


Q ss_pred             CeEEEEEEECCCCce-EeecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          379 GRSYLGILDDFGHSL-SLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       379 g~~~L~~~dl~~g~~-~~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      ....|+.+|.+ |+. ..+..+..... ...++++ +++....   ...|+.+|+++|+.
T Consensus       144 ~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~-~~v~~~~---~~~v~~~d~~tG~~  198 (276)
T 3no2_A          144 ATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGD-CLVACGD---AHCFVQLNLESNRI  198 (276)
T ss_dssp             TTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSC-EEEECBT---TSEEEEECTTTCCE
T ss_pred             CCCEEEEECCC-CCEEEEEECCCCccceeEcCCCC-EEEEeCC---CCeEEEEeCcCCcE
Confidence            34468899998 653 34443321111 1233444 4444332   24688999887764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.77  E-value=0.38  Score=45.52  Aligned_cols=225  Identities=12%  Similarity=0.063  Sum_probs=119.2

Q ss_pred             CEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCcc
Q 008927          155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ  234 (548)
Q Consensus       155 ~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~  234 (548)
                      +.|++....++.|++++.++   +.+.+....  .......+.++++|.. ++. ...       ...|+++|.+ ++  
T Consensus        26 g~l~v~~~~~~~v~~~d~~~---~~~~~~~~~--~~~~~~~i~~~~~g~l-~v~-~~~-------~~~i~~~~~~-g~--   88 (299)
T 2z2n_A           26 GKVWITQHKANMISCINLDG---KITEYPLPT--PDAKVMCLTISSDGEV-WFT-ENA-------ANKIGRITKK-GI--   88 (299)
T ss_dssp             SCEEEEETTTTEEEEECTTC---CEEEEECSS--TTCCEEEEEECTTSCE-EEE-ETT-------TTEEEEECTT-SC--
T ss_pred             CCEEEEecCCCcEEEEcCCC---CeEEecCCc--ccCceeeEEECCCCCE-EEe-CCC-------CCeEEEECCC-Cc--
Confidence            35677665567899998763   333332110  0123456678899874 333 221       1368999987 44  


Q ss_pred             CcEEeee--cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCC
Q 008927          235 EPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (548)
Q Consensus       235 ~~~~L~~--~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG  312 (548)
                       .+.+..  .........++|||+ | |+...      ....|++++.+  +++. ...+....    .....+.+++||
T Consensus        89 -~~~~~~~~~~~~~~~i~~~~~g~-l-~v~~~------~~~~i~~~d~~--g~~~-~~~~~~~~----~~~~~i~~~~~g  152 (299)
T 2z2n_A           89 -IKEYTLPNPDSAPYGITEGPNGD-I-WFTEM------NGNRIGRITDD--GKIR-EYELPNKG----SYPSFITLGSDN  152 (299)
T ss_dssp             -EEEEECSSTTCCEEEEEECTTSC-E-EEEET------TTTEEEEECTT--CCEE-EEECSSTT----CCEEEEEECTTS
T ss_pred             -EEEEeCCCcCCCceeeEECCCCC-E-EEEec------CCceEEEECCC--CCEE-EecCCCCC----CCCceEEEcCCC
Confidence             444432  122344567889986 3 34422      13578888763  4421 11122111    334567889999


Q ss_pred             cEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCc
Q 008927          313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS  392 (548)
Q Consensus       313 ~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~  392 (548)
                      ++|+.... .  ..|+++++ +++.+.+... .....|      ..+.+.+   + +.|++..  .+...|+++|. +++
T Consensus       153 ~l~v~~~~-~--~~i~~~~~-~g~~~~~~~~-~~~~~~------~~i~~~~---~-g~l~v~~--~~~~~i~~~~~-~g~  214 (299)
T 2z2n_A          153 ALWFTENQ-N--NAIGRITE-SGDITEFKIP-TPASGP------VGITKGN---D-DALWFVE--IIGNKIGRITT-SGE  214 (299)
T ss_dssp             CEEEEETT-T--TEEEEECT-TCCEEEEECS-STTCCE------EEEEECT---T-SSEEEEE--TTTTEEEEECT-TCC
T ss_pred             CEEEEeCC-C--CEEEEEcC-CCcEEEeeCC-CCCCcc------eeEEECC---C-CCEEEEc--cCCceEEEECC-CCc
Confidence            87765532 2  36889998 7766544211 011111      1133331   3 4465443  22346889998 777


Q ss_pred             eEeecCC--CceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          393 LSLLDIP--FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       393 ~~~l~~~--~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      .+.+..+  ......+  ++++ .+++...   ....|+++|. +++
T Consensus       215 ~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~---~~~~i~~~d~-~g~  256 (299)
T 2z2n_A          215 ITEFKIPTPNARPHAITAGAGI-DLWFTEW---GANKIGRLTS-NNI  256 (299)
T ss_dssp             EEEEECSSTTCCEEEEEECSTT-CEEEEET---TTTEEEEEET-TTE
T ss_pred             EEEEECCCCCCCceeEEECCCC-CEEEecc---CCceEEEECC-CCc
Confidence            6655332  2334444  3344 4555432   2467899987 444

>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis}

Probab=96.74  E-value=0.0028  Score=61.10  Aligned_cols=58  Identities=22%  Similarity=0.339  Sum_probs=40.9

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccc-cCccC-hHHHHHHhcCcEEEEeCCCCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILN-LSIQYWTSRGWAFVDVNYGGSTGL  538 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~-~~~~~-~~~Q~~asrGyaVl~~NyRGStGy  538 (548)
                      +|.++  .+|.|.+        ++.|+||++|||....- ...+. .....++..||.|+.+|||+...+
T Consensus        13 ~~~~~--~~y~p~~--------~~~p~iv~~HGGg~~~g~~~~~~~~~~~~l~~~g~~Vi~vdYrlaPe~   72 (274)
T 2qru_A           13 NGATV--TIYPTTT--------EPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLLAPNT   72 (274)
T ss_dssp             TSCEE--EEECCSS--------SSCEEEEEECCSTTTSCCGGGCCHHHHHHHHTTTEEEEEECCCCTTTS
T ss_pred             CCeeE--EEEcCCC--------CCCcEEEEEeCccccCCChhhchHHHHHHHHHCCCEEEEeCCCCCCCC
Confidence            66554  5677742        34699999999986432 22342 345678889999999999997654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.73  E-value=0.88  Score=49.69  Aligned_cols=52  Identities=10%  Similarity=0.055  Sum_probs=33.0

Q ss_pred             EEEEEEECCCCceE-eecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          381 SYLGILDDFGHSLS-LLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       381 ~~L~~~dl~~g~~~-~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      ..|+.+|+.+|++. ++..+..... .++.+++.+++ ++   ....++.+|+++++.
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~-g~---~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ-GT---ADGRLVAYHAATGEK  510 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE-EC---TTSEEEEEETTTCCE
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEE-EC---CCCcEEEEECCCCce
Confidence            68999999999754 3332221222 23556775544 42   347899999988874

>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L}

Probab=96.68  E-value=0.0045  Score=58.48  Aligned_cols=61  Identities=13%  Similarity=0.102  Sum_probs=47.0

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      +...++.  ||.+++...+.|.          ..|+||++||++....  .|....+.|+++||.|+.+|+||-.
T Consensus         5 ~~~~~~~--~g~~l~~~~~g~~----------~~~~vv~~hG~~~~~~--~~~~~~~~l~~~G~~v~~~d~~G~G   65 (286)
T 3qit_A            5 EEKFLEF--GGNQICLCSWGSP----------EHPVVLCIHGILEQGL--AWQEVALPLAAQGYRVVAPDLFGHG   65 (286)
T ss_dssp             EEEEEEE--TTEEEEEEEESCT----------TSCEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEEECCTTST
T ss_pred             hhheeec--CCceEEEeecCCC----------CCCEEEEECCCCcccc--hHHHHHHHhhhcCeEEEEECCCCCC
Confidence            4444554  7999999888652          2378999999986554  4667788999999999999999843

>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ...

Probab=96.65  E-value=0.00056  Score=73.04  Aligned_cols=62  Identities=19%  Similarity=0.273  Sum_probs=41.2

Q ss_pred             ccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCcc-ChHHHHHH-hcCcEEEEeCCC-CCCCC
Q 008927          468 TEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWT-SRGWAFVDVNYG-GSTGL  538 (548)
Q Consensus       468 s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~-~~~~Q~~a-srGyaVl~~NyR-GStGy  538 (548)
                      +. |...+  -+|.|.+.      .+++|+||+||||....-.... ....+.|+ .+|++|+.+||| |..||
T Consensus        91 se-dcl~l--nv~~P~~~------~~~~Pv~v~iHGG~~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf  155 (537)
T 1ea5_A           91 SE-DCLYL--NIWVPSPR------PKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGF  155 (537)
T ss_dssp             CS-CCCEE--EEEECSSC------CSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHHHHH
T ss_pred             CC-cCCeE--EEeccCCC------CCCCeEEEEECCCcccCCCCCCCccChHHHHhcCCEEEEEeccCcccccc
Confidence            55 77555  45567531      3578999999999865432221 12346777 789999999999 43343

>3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba}

Probab=96.65  E-value=0.001  Score=65.30  Aligned_cols=58  Identities=12%  Similarity=0.131  Sum_probs=43.0

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGL  538 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGy  538 (548)
                      +|.. .+.+|.|.+       +.+.|+||++||+.....  .|....+.|+++||.|+.+||||...-
T Consensus        80 ~g~~-~~~~~~p~~-------~~~~p~vv~~HG~~~~~~--~~~~~~~~la~~G~~vv~~d~~g~g~s  137 (306)
T 3vis_A           80 DGFG-GGTIYYPRE-------NNTYGAIAISPGYTGTQS--SIAWLGERIASHGFVVIAIDTNTTLDQ  137 (306)
T ss_dssp             SSSC-CEEEEEESS-------CSCEEEEEEECCTTCCHH--HHHHHHHHHHTTTEEEEEECCSSTTCC
T ss_pred             CCCc-ceEEEeeCC-------CCCCCEEEEeCCCcCCHH--HHHHHHHHHHhCCCEEEEecCCCCCCC
Confidence            5554 456677753       236799999999875433  456678899999999999999986443

>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*

Probab=96.62  E-value=0.00055  Score=73.88  Aligned_cols=48  Identities=17%  Similarity=0.238  Sum_probs=33.8

Q ss_pred             CCCCcEEEEEccCccccccCcc-ChHHHHHHh-cCcEEEEeCCC-CCCCCC
Q 008927          492 EEKPPLLVKSHGGPTSEARGIL-NLSIQYWTS-RGWAFVDVNYG-GSTGLS  539 (548)
Q Consensus       492 ~~~~Pliv~iHGGP~~~~~~~~-~~~~Q~~as-rGyaVl~~NyR-GStGyG  539 (548)
                      ++++|+||+||||....-.... ....+.|++ .|++|+.+||| |.-||+
T Consensus       138 ~~~~PV~v~iHGGg~~~g~~~~~~~~~~~l~~~~~~vvv~~nYRlg~~Gfl  188 (585)
T 1dx4_A          138 TNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFL  188 (585)
T ss_dssp             CSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTHHHHC
T ss_pred             CCCCCEEEEECCCcccCCCCCCCCCCchhhhccCCEEEEEecccccchhhc
Confidence            4678999999999865433321 122356776 79999999999 655553

>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...

Probab=96.59  E-value=0.0006  Score=72.71  Aligned_cols=62  Identities=18%  Similarity=0.253  Sum_probs=40.6

Q ss_pred             ccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCcc-ChHHHHHHh-cCcEEEEeCCC-CCCCC
Q 008927          468 TEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTS-RGWAFVDVNYG-GSTGL  538 (548)
Q Consensus       468 s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~-~~~~Q~~as-rGyaVl~~NyR-GStGy  538 (548)
                      +. |...+  -+|.|.+.      .+++|+||+||||....-.... ....+.|++ +|++|+.+||| |..||
T Consensus        89 ~e-dcl~l--nv~~P~~~------~~~~Pv~v~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf  153 (529)
T 1p0i_A           89 SE-DCLYL--NVWIPAPK------PKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGF  153 (529)
T ss_dssp             CS-CCCEE--EEEEESSC------CSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHH
T ss_pred             CC-cCCeE--EEeeCCCC------CCCCeEEEEECCCccccCCCCccccChHHHhccCCeEEEEeccccccccc
Confidence            44 76555  45667531      2578999999999764332221 123467777 79999999999 44444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.51  E-value=0.11  Score=53.63  Aligned_cols=159  Identities=12%  Similarity=0.076  Sum_probs=88.6

Q ss_pred             cceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCC
Q 008927          194 ADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (548)
Q Consensus       194 ~~~~~Sp-DG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~  272 (548)
                      ..+.++| ++..|+++ ...        ..|+++|++++.   .+.+......-...+|++||++|++..+....   ..
T Consensus       140 ~~lavdp~~~g~Lyv~-d~~--------~~I~~id~~~~~---v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~---~~  204 (430)
T 3tc9_A          140 VWLSFDPKNHNHLYLV-GEQ--------HPTRLIDFEKEY---VSTVYSGLSKVRTICWTHEADSMIITNDQNNN---DR  204 (430)
T ss_dssp             CEEEEETTEEEEEEEE-EBT--------EEEEEEETTTTE---EEEEECCCSCEEEEEECTTSSEEEEEECCSCT---TS
T ss_pred             CEEEECCCCCCeEEEE-eCC--------CcEEEEECCCCE---EEEEecCCCCcceEEEeCCCCEEEEEeCCCCc---cc
Confidence            3467888 46665554 321        579999999987   66665544445567899999977654422111   12


Q ss_pred             ceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc-CCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCc
Q 008927          273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPL  351 (548)
Q Consensus       273 ~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp-DG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~  351 (548)
                      ..+++++.+  |.+.....+...     .......++| +|.||+. |...  ..|+++++++++...+.... ....| 
T Consensus       205 ~~v~~~~~~--g~~~~~~~l~~~-----~~p~giavdp~~g~lyv~-d~~~--~~V~~~~~~~~~~~~~~~~~-~~~~P-  272 (430)
T 3tc9_A          205 PNNYILTRE--SGFKVITELTKG-----QNCNGAETHPINGELYFN-SWNA--GQVFRYDFTTQETTPLFTIQ-DSGWE-  272 (430)
T ss_dssp             EEEEEEEGG--GTSCSEEEEEEC-----SSCCCEEECTTTCCEEEE-ETTT--TEEEEEETTTTEEEEEEECS-SSSCC-
T ss_pred             ceEEEEeCC--CceeeeeeeccC-----CCceEEEEeCCCCEEEEE-ECCC--CEEEEEECCCCcEEEEEEcC-CCCcc-
Confidence            245555543  433222333321     2345678899 5656554 4423  37999999877664443211 11112 


Q ss_pred             ccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECC
Q 008927          352 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF  389 (548)
Q Consensus       352 w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~  389 (548)
                           ..+++.|   ++++||++-.  ....|++++.+
T Consensus       273 -----~gia~~p---dG~~lyv~d~--~~~~I~~~~~d  300 (430)
T 3tc9_A          273 -----FHIQFHP---SGNYAYIVVV--NQHYILRSDYD  300 (430)
T ss_dssp             -----EEEEECT---TSSEEEEEET--TTTEEEEEEEE
T ss_pred             -----eeEEEcC---CCCEEEEEEC--CCCEEEEEeCC
Confidence                 1245554   6776776542  33456666554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.049  Score=55.54  Aligned_cols=153  Identities=7%  Similarity=-0.044  Sum_probs=84.6

Q ss_pred             CEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc
Q 008927          155 DTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (548)
Q Consensus       155 ~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~  233 (548)
                      +.++++...++.|++.++..  ++. ..+....  ....+..+.|+|+|+.|+....+         ..|.++|+.+++.
T Consensus       182 ~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~  248 (437)
T 3gre_A          182 KSLLVALTNLSRVIIFDIRT--LERLQIIENSP--RHGAVSSICIDEECCVLILGTTR---------GIIDIWDIRFNVL  248 (437)
T ss_dssp             CEEEEEEETTSEEEEEETTT--CCEEEEEECCG--GGCCEEEEEECTTSCEEEEEETT---------SCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCeEEEEeCCC--CeeeEEEccCC--CCCceEEEEECCCCCEEEEEcCC---------CeEEEEEcCCccE
Confidence            34555555678899999876  444 3333210  01245677899999987765433         3588889988761


Q ss_pred             cCcEEee-ecCCceeee----EECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCC----------
Q 008927          234 QEPKVLV-SGSDFYAFP----RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT----------  298 (548)
Q Consensus       234 ~~~~~L~-~~~~~~~~p----~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~----------  298 (548)
                        ...+. .....+...    .|+|||+.|+-..        ....|.+.|+.. ++.  ...+.+....          
T Consensus       249 --~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~--------~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~  315 (437)
T 3gre_A          249 --IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS--------SKTFLTIWNFVK-GHC--QYAFINSDEQPSMEHFLPIE  315 (437)
T ss_dssp             --EEEEBCTTCEEEEEEEECTTTCTTEEEEEEES--------TTEEEEEEETTT-TEE--EEEEESSSSCCCGGGGSCBC
T ss_pred             --EEEEecCCCCceEEEEeccccCCCccEEEEEc--------CCCcEEEEEcCC-CcE--EEEEEcCCCCCccceecccc
Confidence              22222 222223333    5667887776322        135688889874 431  2222211100          


Q ss_pred             ------------cccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCee
Q 008927          299 ------------IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV  337 (548)
Q Consensus       299 ------------~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~  337 (548)
                                  ....+....|+ ++++++.... +|  .|..+|+.+++.
T Consensus       316 ~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~-d~--~i~~wd~~~~~~  362 (437)
T 3gre_A          316 KGLEELNFCGIRSLNALSTISVS-NDKILLTDEA-TS--SIVMFSLNELSS  362 (437)
T ss_dssp             SSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG-GT--EEEEEETTCGGG
T ss_pred             cccccceecccccCCceEEEEEC-CceEEEecCC-CC--eEEEEECCCccc
Confidence                        00234556777 6665555443 33  577778777653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=96.49  E-value=0.13  Score=51.03  Aligned_cols=218  Identities=10%  Similarity=0.074  Sum_probs=107.2

Q ss_pred             cccCCCCCCCcCCHHHHhcCCCccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCC-CcccC-CCCCCccccceee
Q 008927           68 ITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDE-PSDIT-PKEYAVRTTAQEY  145 (548)
Q Consensus        68 ~~~~~g~w~spit~~~l~~~~~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~-~~~lt-~~~~~~r~~v~~y  145 (548)
                      +..||..|...     ....-..+..+.++|.+++|++.......+...|++++... ++ .+.+. +.... ...  .+
T Consensus        51 ~~~~~p~~~~~-----~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t-g~~~~~~~~~~~~~-~~~--~~  121 (343)
T 2qe8_A           51 GLIPFPPQSGN-----AIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN-NQLSRVIYLPPPIT-LSN--SF  121 (343)
T ss_dssp             EEEESCCCCSS-----CCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT-TEEEEEEECCTTTS-CTT--CC
T ss_pred             CeecCCCcccC-----cccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC-CeEEEEEECChhhc-ccc--cc
Confidence            35577777631     11112456677888756787776321000123466665432 23 22221 11100 000  00


Q ss_pred             CCeeeEEE--CCEEEEEeC---CCCeEEEEeCCCCCCCceecCCC---CCC-------CC----------------ceec
Q 008927          146 GGGAFRIF--GDTVIFSNY---KDQRLYKHSIDSKDSSPLPITPD---YGE-------PL----------------VSYA  194 (548)
Q Consensus       146 gg~~~~~~--~~~i~F~~~---~~~~Ly~~~~~~~~~~~~~lT~~---~~~-------~~----------------~~~~  194 (548)
                       -.....+  ++.+|+++.   .+..|+++++++  ++..++...   ...       ..                ....
T Consensus       122 -~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~--g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~  198 (343)
T 2qe8_A          122 -VNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT--GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVN  198 (343)
T ss_dssp             -CCEEEEETTTTEEEEEECCSGGGCEEEEEETTT--CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEE
T ss_pred             -cceEEEecCCCEEEEEcCccCCCCeEEEEECCC--CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccc
Confidence             0123444  567888775   567899999876  444433211   000       00                0123


Q ss_pred             ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC---CCCcc------CcEEeeecCCceeeeEECCCCCEEEEEEecC
Q 008927          195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN---GQNIQ------EPKVLVSGSDFYAFPRMDPRGERMAWIEWHH  265 (548)
Q Consensus       195 ~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~---~g~~~------~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~  265 (548)
                      .+.|||||+.|++....        ...||.++..   .+...      ....+.. ...-...++++||. | |++.. 
T Consensus       199 gia~s~dg~~ly~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~-~g~pdgia~d~~G~-l-~va~~-  266 (343)
T 2qe8_A          199 GIVLDAENEWLYLSPMH--------STSMYRIKSADLSNLQLTDAELGSKIERYSE-KPICDGISIDKDHN-I-YVGDL-  266 (343)
T ss_dssp             EEEECTTSCEEEEEESS--------CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEE-CCSCSCEEECTTCC-E-EEEEG-
T ss_pred             eeEeccCCCEEEEEeCC--------CCeEEEEEHHHhcCCCCChhhhhcceEeccc-CCCCceEEECCCCC-E-EEEcc-
Confidence            47899999987665322        2479999853   11100      0112211 11223457899986 4 44421 


Q ss_pred             CCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeC
Q 008927          266 PNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR  320 (548)
Q Consensus       266 ~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~  320 (548)
                           ....|++++.+ +|++   ..+...+ . ......+.+++||+||+++.+
T Consensus       267 -----~~~~V~~~d~~-~G~~---~~~~~~~-~-~~~p~~va~~~~g~l~v~~~~  310 (343)
T 2qe8_A          267 -----AHSAIGVITSA-DRAY---KLLVTDE-K-LSWTDSFNFGSDGYLYFDCNQ  310 (343)
T ss_dssp             -----GGTEEEEEETT-TTEE---EEEEECG-G-GSCEEEEEECTTSCEEEEECC
T ss_pred             -----CCCeEEEEECC-CCCE---EEEEECC-c-eecCCeeEECCCCcEEEEeCc
Confidence                 24678888873 3542   2222211 0 023456788888888777654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=96.41  E-value=0.14  Score=51.66  Aligned_cols=73  Identities=8%  Similarity=-0.092  Sum_probs=45.3

Q ss_pred             eecceeeCC--------CCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEe
Q 008927          192 SYADGIFDP--------RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEW  263 (548)
Q Consensus       192 ~~~~~~~Sp--------DG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~  263 (548)
                      .+.+..|+|        ||+.|+-...|         ..|.++|+.++..  ...+...........|+|++..++....
T Consensus       138 ~v~~v~~~p~~~~~~~~d~~~las~s~D---------~tv~~Wd~~~~~~--~~~~~~~~~~v~~v~~~p~~~~~l~~~~  206 (393)
T 4gq1_A          138 FVNDIDIADVYSADNRLAEQVIASVGDD---------CTLIIWRLTDEGP--ILAGYPLSSPGISVQFRPSNPNQLIVGE  206 (393)
T ss_dssp             CEEEEEEEEEECTTCSEEEEEEEEEETT---------SEEEEEEEETTEE--EEEEEECSSCEEEEEEETTEEEEEEEEE
T ss_pred             ceEEEEEccccccccCCCCCEEEEEECC---------CeEEEEECCCCce--eeeecCCCCCcEEEEECCCCCceEEecC
Confidence            456677887        88877665444         3577778766541  3344444555667789999875443442


Q ss_pred             cCCCCCCCCceEEEEEecC
Q 008927          264 HHPNMPWDKAELWVGYISE  282 (548)
Q Consensus       264 ~~~~~p~~~~~L~v~~~~~  282 (548)
                      .       ...|.+.|+..
T Consensus       207 ~-------d~~v~~wd~~t  218 (393)
T 4gq1_A          207 R-------NGNIRIFDWTL  218 (393)
T ss_dssp             T-------TSEEEEEETTC
T ss_pred             C-------CCEEEEEECCC
Confidence            1       34577777764

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.40  E-value=0.067  Score=53.59  Aligned_cols=165  Identities=15%  Similarity=0.049  Sum_probs=73.9

Q ss_pred             CCHHHHhcCCCccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEE---CC
Q 008927           79 LTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF---GD  155 (548)
Q Consensus        79 it~~~l~~~~~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~---~~  155 (548)
                      ++++.+...-.....+.+.|++++|..+.    .|+  |++++.+  +. +.+..-+.... ....--|-++.++   ++
T Consensus        19 ~~~~~va~~l~~P~~ia~~pdG~l~V~e~----~g~--I~~~d~~--G~-~~~~~~~v~~~-g~~g~~gia~~pdf~~~g   88 (354)
T 3a9g_A           19 FKISEVASDLEVPWSIAPLGGGRYLVTER----PGR--LVLISPS--GK-KLVASFDVANV-GEAGLLGLALHPEFPKKS   88 (354)
T ss_dssp             EEEEEEECSCSCEEEEEEEETTEEEEEET----TTE--EEEECSS--CE-EEEEECCCCCS-TTCSEEEEEECTTTTTSC
T ss_pred             eEEEEEeCCCCCCeEEEEcCCCeEEEEeC----CCE--EEEEeCC--Cc-eEeeccceeec-CCCceeeEEeCCCCCcCC
Confidence            34444444324556778888556666653    244  5555444  33 33321100000 0000011234343   45


Q ss_pred             EEEEEeC---CC----CeEEEEeCCCCCCC---ceec-CCCCCCCCceecceeeCCCCCEEEEEEeccCC-----CCCCc
Q 008927          156 TVIFSNY---KD----QRLYKHSIDSKDSS---PLPI-TPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-----DALNS  219 (548)
Q Consensus       156 ~i~F~~~---~~----~~Ly~~~~~~~~~~---~~~l-T~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~-----~~~~~  219 (548)
                      .||+...   .+    .+|++++++++...   .+.| +.........-..+.|+|||. |++...+...     .....
T Consensus        89 ~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~  167 (354)
T 3a9g_A           89 WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSL  167 (354)
T ss_dssp             EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCC
T ss_pred             EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCC
Confidence            7766543   23    68999998752011   2222 111000011124688999996 4443222110     01123


Q ss_pred             eeEEEEEECCCCCcc-----CcEEeeecCCceeeeEECCC
Q 008927          220 TTEIVAIALNGQNIQ-----EPKVLVSGSDFYAFPRMDPR  254 (548)
Q Consensus       220 ~~~l~~idl~~g~~~-----~~~~L~~~~~~~~~p~~SPD  254 (548)
                      ...|++++.++.-..     ..+++..+...-...+|+|+
T Consensus       168 ~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~  207 (354)
T 3a9g_A          168 AGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRA  207 (354)
T ss_dssp             SSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTT
T ss_pred             CeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCC
Confidence            357999988765100     03455544333334567773

>2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A*

Probab=96.37  E-value=0.00089  Score=65.01  Aligned_cols=72  Identities=13%  Similarity=0.101  Sum_probs=50.3

Q ss_pred             CccCCeEEEeeccCC-CeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHh-cCcEEEEeCCCC
Q 008927          457 YFSLPELIEFPTEVP-GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGG  534 (548)
Q Consensus       457 ~~~~pe~i~~~s~~d-G~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~as-rGyaVl~~NyRG  534 (548)
                      .+...+.+++.+. + |.++..++|.|.+  |++  +++||+|++.||+......  .....+.+++ .+++|+.++|++
T Consensus         9 ~~~~~~~~~~~S~-~~~~~~~~~vylP~~--y~~--~~~yPvly~l~G~~~~~~~--~~~~~~~l~~~~~~ivV~v~~~~   81 (278)
T 2gzs_A            9 VFYHFSATSFDSV-DGTRHYRVWTAVPNT--TAP--ASGYPILYMLDGNAVMDRL--DDELLKQLSEKTPPVIVAVGYQT   81 (278)
T ss_dssp             SSEEEEEEEEECT-TSSCEEEEEEEEESS--CCC--TTCEEEEEESSHHHHHHHC--CHHHHHHHTTSCCCEEEEEEESS
T ss_pred             CCCceEEEEEEcC-CCCceEEEEEECCCC--CCC--CCCCCEEEEeeChhHHHHH--HHHHHHHhccCCCeEEEEEcCCC
Confidence            4556778889886 5 6899999999965  653  5789998877777642211  1123355665 789999888876


Q ss_pred             C
Q 008927          535 S  535 (548)
Q Consensus       535 S  535 (548)
                      .
T Consensus        82 ~   82 (278)
T 2gzs_A           82 N   82 (278)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.37  E-value=1  Score=45.67  Aligned_cols=223  Identities=10%  Similarity=0.075  Sum_probs=119.8

Q ss_pred             EEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927          151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (548)
Q Consensus       151 ~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~  229 (548)
                      ..+++.| ++...++.|.+.++..  ++. ..+...    ...+..+.|  +++.|+....+         ..|.++|+.
T Consensus       166 ~~~~~~l-~s~~~dg~i~vwd~~~--~~~~~~~~~h----~~~v~~~~~--~~~~l~s~s~d---------g~i~~wd~~  227 (445)
T 2ovr_B          166 QMRDNII-ISGSTDRTLKVWNAET--GECIHTLYGH----TSTVRCMHL--HEKRVVSGSRD---------ATLRVWDIE  227 (445)
T ss_dssp             EEETTEE-EEEETTSCEEEEETTT--TEEEEEECCC----SSCEEEEEE--ETTEEEEEETT---------SEEEEEESS
T ss_pred             EecCCEE-EEEeCCCeEEEEECCc--CcEEEEECCC----CCcEEEEEe--cCCEEEEEeCC---------CEEEEEECC
Confidence            3455544 4444677888888876  433 233322    123444455  45666554332         478899999


Q ss_pred             CCCccCcE-EeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          230 GQNIQEPK-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       230 ~g~~~~~~-~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      +++   .. .+...........+  ||+.|+-...        ...|.+.|+.. ++  ....+.+..    ..+....|
T Consensus       228 ~~~---~~~~~~~~~~~v~~~~~--~~~~l~~~~~--------dg~i~iwd~~~-~~--~~~~~~~~~----~~v~~~~~  287 (445)
T 2ovr_B          228 TGQ---CLHVLMGHVAAVRCVQY--DGRRVVSGAY--------DFMVKVWDPET-ET--CLHTLQGHT----NRVYSLQF  287 (445)
T ss_dssp             SCC---EEEEEECCSSCEEEEEE--CSSCEEEEET--------TSCEEEEEGGG-TE--EEEEECCCS----SCEEEEEE
T ss_pred             CCc---EEEEEcCCcccEEEEEE--CCCEEEEEcC--------CCEEEEEECCC-Cc--EeEEecCCC----CceEEEEE
Confidence            886   33 33333333444445  7888774441        34688889874 43  233344332    34556667


Q ss_pred             CcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEEC
Q 008927          309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (548)
Q Consensus       309 spDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl  388 (548)
                        ||+.++.... +|  .|..+|+.+++........     ...+   ..+.+     +++.| ++...++  .|.++|+
T Consensus       288 --~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~-----~~~v---~~~~~-----~~~~l-~~~~~dg--~i~vwd~  346 (445)
T 2ovr_B          288 --DGIHVVSGSL-DT--SIRVWDVETGNCIHTLTGH-----QSLT---SGMEL-----KDNIL-VSGNADS--TVKIWDI  346 (445)
T ss_dssp             --CSSEEEEEET-TS--CEEEEETTTCCEEEEECCC-----CSCE---EEEEE-----ETTEE-EEEETTS--CEEEEET
T ss_pred             --CCCEEEEEeC-CC--eEEEEECCCCCEEEEEcCC-----cccE---EEEEE-----eCCEE-EEEeCCC--eEEEEEC
Confidence              7775555444 34  4677787777653322110     0111   11233     45544 3444455  4666788


Q ss_pred             CCCce-EeecC---CCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          389 FGHSL-SLLDI---PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       389 ~~g~~-~~l~~---~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      .+++. ..+..   ....+..+..+++.+ ++++.   -..|.++|+.+++.
T Consensus       347 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~s~~~---dg~v~iwd~~~~~~  394 (445)
T 2ovr_B          347 KTGQCLQTLQGPNKHQSAVTCLQFNKNFV-ITSSD---DGTVKLWDLKTGEF  394 (445)
T ss_dssp             TTCCEEEEECSTTSCSSCEEEEEECSSEE-EEEET---TSEEEEEETTTCCE
T ss_pred             CCCcEEEEEccCCCCCCCEEEEEECCCEE-EEEeC---CCeEEEEECCCCce
Confidence            77764 34443   222355555566544 34432   36788999887764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.35  E-value=1  Score=49.13  Aligned_cols=80  Identities=6%  Similarity=-0.129  Sum_probs=43.1

Q ss_pred             eeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eecCCCcee
Q 008927          325 WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTDI  403 (548)
Q Consensus       325 ~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~~~~~~~  403 (548)
                      ..|+.+|+.+|++.--.+.    ..+.|.     -.+..   +++.+++ ...  ...|+.+|+++|++. .+..+...+
T Consensus       457 g~l~A~D~~tG~~~W~~~~----~~~~~~-----g~~~~---~g~~v~~-g~~--dg~l~a~D~~tG~~lw~~~~~~~~~  521 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEH----VSPWNG-----GTLTT---AGNVVFQ-GTA--DGRLVAYHAATGEKLWEAPTGTGVV  521 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEE----SSSCCC-----CEEEE---TTTEEEE-ECT--TSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             cEEEEEeCCCCcEEeecCC----CCCCcC-----cceEe---CCCEEEE-ECC--CCcEEEEECCCCceeeeeeCCCCcc
Confidence            5689999999886433221    122221     11221   5665554 333  346889999999754 444443221


Q ss_pred             -Eee--eecCCEEEEEEec
Q 008927          404 -DNI--TLGNDCLFVEGAS  419 (548)
Q Consensus       404 -~~~--s~d~~~l~~~~ss  419 (548)
                       .++  ..+++.++.+.+.
T Consensus       522 ~~p~~y~~~G~~~v~~~~G  540 (677)
T 1kb0_A          522 AAPSTYMVDGRQYVSVAVG  540 (677)
T ss_dssp             SCCEEEEETTEEEEEEEEC
T ss_pred             cCCEEEEeCCEEEEEEecc
Confidence             222  3567666555444

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.35  E-value=0.036  Score=57.23  Aligned_cols=118  Identities=12%  Similarity=0.032  Sum_probs=67.5

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCC-----Cc-cCcEEee--e-cCCceeeeEECCC-CCEEEEEE
Q 008927          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ-----NI-QEPKVLV--S-GSDFYAFPRMDPR-GERMAWIE  262 (548)
Q Consensus       193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g-----~~-~~~~~L~--~-~~~~~~~p~~SPD-Gk~La~~~  262 (548)
                      +..+.|+|||+.|+.......     ....|.++|+.++     +. .....+.  . ..+.+....|+|+ ++.|+-..
T Consensus        95 v~~l~~spdg~~lav~~~sgs-----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSE-----YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETT-----TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             ccEEEEcCCCCEEEEEEeccC-----CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            567789999998875321110     1256788887654     10 0011121  1 2334667899998 66666444


Q ss_pred             ecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEecc
Q 008927          263 WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES  333 (548)
Q Consensus       263 ~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~  333 (548)
                      .        ...|.+.|+.. +.  ......+..    ..+....|+|||+++++... +|  .|..+|..
T Consensus       170 ~--------Dg~v~iwD~~~-~~--~~~~~~~~~----~~v~~v~wspdg~~lasgs~-dg--~v~iwd~~  222 (434)
T 2oit_A          170 A--------DGSIAVLQVTE-TV--KVCATLPST----VAVTSVCWSPKGKQLAVGKQ-NG--TVVQYLPT  222 (434)
T ss_dssp             T--------TSCEEEEEESS-SE--EEEEEECGG----GCEEEEEECTTSSCEEEEET-TS--CEEEECTT
T ss_pred             C--------CCeEEEEEcCC-Cc--ceeeccCCC----CceeEEEEcCCCCEEEEEcC-CC--cEEEEccC
Confidence            2        34688889874 42  122222211    45778899999994444434 44  46667776

>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A

Probab=96.34  E-value=0.00092  Score=71.91  Aligned_cols=68  Identities=16%  Similarity=0.190  Sum_probs=42.1

Q ss_pred             eeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCc---c----ChHHHHHHhc-CcEEEEeCCC-CCC
Q 008927          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---L----NLSIQYWTSR-GWAFVDVNYG-GST  536 (548)
Q Consensus       466 ~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~---~----~~~~Q~~asr-GyaVl~~NyR-GSt  536 (548)
                      +.+. |...+.  +|.|.+..   ..++++|+||+||||....-...   +    ....+.|+++ |++|+.+||| |..
T Consensus        75 ~~se-dcl~ln--v~~P~~~~---~~~~~~PV~v~iHGGg~~~Gs~~~~~~~~~~~~~~~~la~~~~vvvV~~nYRLg~~  148 (579)
T 2bce_A           75 YGNE-DCLYLN--IWVPQGRK---EVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPL  148 (579)
T ss_dssp             ESCS-CCCEEE--EEEEECSS---SCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHH
T ss_pred             CCCC-CCCEEE--EEECCCCC---CCCCCCeEEEEECCCcccCCCCCccccccccccChHHHhcCCCEEEEEeCCccccc
Confidence            4465 775554  56675321   02467899999999986443221   1    1224667765 7999999999 555


Q ss_pred             CCC
Q 008927          537 GLS  539 (548)
Q Consensus       537 GyG  539 (548)
                      ||+
T Consensus       149 Gfl  151 (579)
T 2bce_A          149 GFL  151 (579)
T ss_dssp             HHC
T ss_pred             cCC
Confidence            553

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.31  E-value=0.98  Score=44.78  Aligned_cols=183  Identities=9%  Similarity=0.063  Sum_probs=87.9

Q ss_pred             eEEEEEECCCCCccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCc
Q 008927          221 TEIVAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI  299 (548)
Q Consensus       221 ~~l~~idl~~g~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~  299 (548)
                      ..|+.+|.++|+   ..--.. .......|... +| .| |+...       ...|+.+|.+ +|+.. .+.-.......
T Consensus       113 g~l~a~d~~tG~---~~W~~~~~~~~~~~p~~~-~~-~v-~v~~~-------~g~l~~~d~~-tG~~~-W~~~~~~~~~~  177 (376)
T 3q7m_A          113 AQVYALNTSDGT---VAWQTKVAGEALSRPVVS-DG-LV-LIHTS-------NGQLQALNEA-DGAVK-WTVNLDMPSLS  177 (376)
T ss_dssp             SEEEEEETTTCC---EEEEEECSSCCCSCCEEE-TT-EE-EEECT-------TSEEEEEETT-TCCEE-EEEECCC----
T ss_pred             CEEEEEECCCCC---EEEEEeCCCceEcCCEEE-CC-EE-EEEcC-------CCeEEEEECC-CCcEE-EEEeCCCCcee
Confidence            479999999997   432222 22234455554 33 44 34311       3579999987 45421 11111111000


Q ss_pred             ccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCC---CcccccCcceeeeeecCCCCEEEEEEE
Q 008927          300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR---PLWVFGINSYEIIQSHGEKNLIACSYR  376 (548)
Q Consensus       300 ~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~---p~w~~~~~~~~~~~~~~d~~~l~~~~~  376 (548)
                      ......|... +|.+++.+.  .  ..|+.+|+++|+..--.+.......   ............     .++.|++.. 
T Consensus       178 ~~~~~~~~~~-~~~v~~g~~--~--g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-----~~~~v~~~~-  246 (376)
T 3q7m_A          178 LRGESAPTTA-FGAAVVGGD--N--GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-----VNGVVFALA-  246 (376)
T ss_dssp             -CCCCCCEEE-TTEEEECCT--T--TEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-----ETTEEEEEC-
T ss_pred             ecCCCCcEEE-CCEEEEEcC--C--CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-----ECCEEEEEe-
Confidence            0011334433 444544332  2  3688899888876432211000000   000000000111     355666543 


Q ss_pred             eCCeEEEEEEECCCCceEeecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          377 QNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       377 ~~g~~~L~~~dl~~g~~~~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      .  ...|+.+|+++|+..--.. .........+++.+++...    ...|+.+|+++++.
T Consensus       247 ~--~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~l~~~~~----~g~l~~~d~~tG~~  299 (376)
T 3q7m_A          247 Y--NGNLTALDLRSGQIMWKRE-LGSVNDFIVDGNRIYLVDQ----NDRVMALTIDGGVT  299 (376)
T ss_dssp             T--TSCEEEEETTTCCEEEEEC-CCCEEEEEEETTEEEEEET----TCCEEEEETTTCCE
T ss_pred             c--CcEEEEEECCCCcEEeecc-CCCCCCceEECCEEEEEcC----CCeEEEEECCCCcE
Confidence            2  2368899999887542211 1223334456777776543    35799999988873

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.30  E-value=0.69  Score=44.37  Aligned_cols=243  Identities=6%  Similarity=-0.136  Sum_probs=118.5

Q ss_pred             CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC
Q 008927          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD  244 (548)
Q Consensus       165 ~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~  244 (548)
                      ..+|++++..  .+-+.+....   ..+.......-++ .|+++ ....  .....++++++|+.+++...-+.+...+.
T Consensus        31 ~~~~~~d~~~--~~W~~~~~~p---~~r~~~~~~~~~~-~l~v~-GG~~--~~~~~~~~~~~d~~~~~~~~W~~~~~~p~  101 (301)
T 2vpj_A           31 DVVEKYDPKT--QEWSFLPSIT---RKRRYVASVSLHD-RIYVI-GGYD--GRSRLSSVECLDYTADEDGVWYSVAPMNV  101 (301)
T ss_dssp             CCEEEEETTT--TEEEECCCCS---SCCBSCEEEEETT-EEEEE-CCBC--SSCBCCCEEEEETTCCTTCCCEEECCCSS
T ss_pred             eEEEEEcCCC--CeEEeCCCCC---hhhccccEEEECC-EEEEE-cCCC--CCccCceEEEEECCCCCCCeeEECCCCCC
Confidence            3688888876  5555665432   1222221222344 44433 2211  11245689999998875100123322111


Q ss_pred             -ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeC--C
Q 008927          245 -FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR--K  321 (548)
Q Consensus       245 -~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~--~  321 (548)
                       ....-...-+++ |..+.-....  -....++++|+.. +++..   +...+ .  .........-+++||++.-.  .
T Consensus       102 ~r~~~~~~~~~~~-lyv~GG~~~~--~~~~~~~~~d~~~-~~W~~---~~~~p-~--~r~~~~~~~~~~~iyv~GG~~~~  171 (301)
T 2vpj_A          102 RRGLAGATTLGDM-IYVSGGFDGS--RRHTSMERYDPNI-DQWSM---LGDMQ-T--AREGAGLVVASGVIYCLGGYDGL  171 (301)
T ss_dssp             CCBSCEEEEETTE-EEEECCBCSS--CBCCEEEEEETTT-TEEEE---EEECS-S--CCBSCEEEEETTEEEEECCBCSS
T ss_pred             CccceeEEEECCE-EEEEcccCCC--cccceEEEEcCCC-CeEEE---CCCCC-C--CcccceEEEECCEEEEECCCCCC
Confidence             111111222454 4333211111  1145799999874 55433   22211 0  11112222347777777422  1


Q ss_pred             CCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC---eEEEEEEECCCCceEeecC
Q 008927          322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---RSYLGILDDFGHSLSLLDI  398 (548)
Q Consensus       322 ~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g---~~~L~~~dl~~g~~~~l~~  398 (548)
                      .....++.+|+++++.+.+.+..    .+...   .....     -++.||+..-.++   ...++++|+++++++.+..
T Consensus       172 ~~~~~~~~~d~~~~~W~~~~~~p----~~r~~---~~~~~-----~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~  239 (301)
T 2vpj_A          172 NILNSVEKYDPHTGHWTNVTPMA----TKRSG---AGVAL-----LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS  239 (301)
T ss_dssp             CBCCCEEEEETTTTEEEEECCCS----SCCBS---CEEEE-----ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred             cccceEEEEeCCCCcEEeCCCCC----ccccc---ceEEE-----ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC
Confidence            22456999999999888775321    11110   11122     2455655432211   3578999999999988763


Q ss_pred             -CCcee-EeeeecCCEEEEEEecCCC--CCeEEEEEcCCCceee
Q 008927          399 -PFTDI-DNITLGNDCLFVEGASGVE--PSSVAKVTLDDHKLKA  438 (548)
Q Consensus       399 -~~~~~-~~~s~d~~~l~~~~ss~~~--p~~l~~~d~~~~~~~~  438 (548)
                       +.... .....-++.|++++.....  ..+++++|+++.+.+.
T Consensus       240 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  283 (301)
T 2vpj_A          240 MTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEV  283 (301)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred             CCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence             22111 1122335667766643222  2678999998877543

>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A

Probab=96.28  E-value=0.0085  Score=57.17  Aligned_cols=57  Identities=19%  Similarity=0.383  Sum_probs=43.2

Q ss_pred             eeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       466 ~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +.+. ||.+++...+-|.          .-|.||++||.+....  .|...++.|+++||.|+.+|+||-
T Consensus         4 ~~~~-~g~~l~y~~~g~~----------~~~~vvllHG~~~~~~--~w~~~~~~L~~~g~~vi~~D~~G~   60 (276)
T 1zoi_A            4 VTTK-DGVQIFYKDWGPR----------DAPVIHFHHGWPLSAD--DWDAQLLFFLAHGYRVVAHDRRGH   60 (276)
T ss_dssp             EECT-TSCEEEEEEESCT----------TSCEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEEECCTTS
T ss_pred             EECC-CCcEEEEEecCCC----------CCCeEEEECCCCcchh--HHHHHHHHHHhCCCEEEEecCCCC
Confidence            4555 8988876666442          1267999999986543  466677899999999999999984

>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12

Probab=96.25  E-value=0.009  Score=56.82  Aligned_cols=57  Identities=19%  Similarity=0.307  Sum_probs=43.0

Q ss_pred             eeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       466 ~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +++. ||.+++-..+-|.          .-|.||++||.+....  .|...++.|+.+||.|+.+|+||-
T Consensus         3 ~~~~-~g~~l~y~~~g~~----------~~~~vvllHG~~~~~~--~w~~~~~~l~~~g~~vi~~D~~G~   59 (275)
T 1a88_A            3 VTTS-DGTNIFYKDWGPR----------DGLPVVFHHGWPLSAD--DWDNQMLFFLSHGYRVIAHDRRGH   59 (275)
T ss_dssp             EECT-TSCEEEEEEESCT----------TSCEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEEECCTTS
T ss_pred             EEcc-CCCEEEEEEcCCC----------CCceEEEECCCCCchh--hHHHHHHHHHHCCceEEEEcCCcC
Confidence            4565 8988876665442          1267899999876543  466677899999999999999984

>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*

Probab=96.24  E-value=0.015  Score=61.18  Aligned_cols=64  Identities=16%  Similarity=0.071  Sum_probs=49.3

Q ss_pred             CccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          457 YFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       457 ~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      .....+...++.. ||.+++....-            ..|+||++||++....  .|....+.|+.+||.|+.+|+||.
T Consensus       233 ~~~~~~~~~~~~~-dg~~l~~~~~g------------~~p~vv~~HG~~~~~~--~~~~~~~~l~~~G~~v~~~D~~G~  296 (555)
T 3i28_A          233 NPSDMSHGYVTVK-PRVRLHFVELG------------SGPAVCLCHGFPESWY--SWRYQIPALAQAGYRVLAMDMKGY  296 (555)
T ss_dssp             CGGGSEEEEEEEE-TTEEEEEEEEC------------SSSEEEEECCTTCCGG--GGTTHHHHHHHTTCEEEEECCTTS
T ss_pred             CCcccceeEEEeC-CCcEEEEEEcC------------CCCEEEEEeCCCCchh--HHHHHHHHHHhCCCEEEEecCCCC
Confidence            3445566777887 99998854431            2388999999986653  567788999999999999999984

>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A*

Probab=96.22  E-value=0.003  Score=67.28  Aligned_cols=58  Identities=14%  Similarity=0.130  Sum_probs=38.2

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCc-cChHHHHHHh------cCcEEEEeCCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTS------RGWAFVDVNYGGST  536 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~-~~~~~Q~~as------rGyaVl~~NyRGSt  536 (548)
                      |..  +..+|.|.+.  .  +++++|+||++|||....-... ++.  +.|+.      .|++|+.+|||.+.
T Consensus        96 dcl--~l~v~~P~~~--~--~~~~~Pv~v~iHGGg~~~g~~~~~~~--~~l~~~~~~~~~~~vvv~~nYRl~~  160 (534)
T 1llf_A           96 DCL--TINVVRPPGT--K--AGANLPVMLWIFGGGFEIGSPTIFPP--AQMVTKSVLMGKPIIHVAVNYRVAS  160 (534)
T ss_dssp             CCC--EEEEEECTTC--C--TTCCEEEEEEECCSTTTSCCGGGSCC--HHHHHHHHHTTCCCEEEEECCCCHH
T ss_pred             CCe--EEEEEECCCC--C--CCCCceEEEEEeCCCcccCCCcccCc--hHHHHHHHhcCCCEEEEEeCCCCCC
Confidence            664  4567788642  1  2567899999999986543222 332  33333      58999999999653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.17  E-value=0.43  Score=46.06  Aligned_cols=141  Identities=14%  Similarity=0.157  Sum_probs=78.2

Q ss_pred             ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCC
Q 008927          153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (548)
Q Consensus       153 ~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~  232 (548)
                      .++.|++.. .++.|++++.++  .........    ......+..+++|.. ++ ...        ...|+.+|.+ |+
T Consensus       106 ~~~~l~v~t-~~~~l~~~d~~g--~~~~~~~~~----~~~~~~~~~~~~g~l-~v-gt~--------~~~l~~~d~~-g~  167 (330)
T 3hxj_A          106 FEDILYVTS-MDGHLYAINTDG--TEKWRFKTK----KAIYATPIVSEDGTI-YV-GSN--------DNYLYAINPD-GT  167 (330)
T ss_dssp             ETTEEEEEC-TTSEEEEECTTS--CEEEEEECS----SCCCSCCEECTTSCE-EE-ECT--------TSEEEEECTT-SC
T ss_pred             ECCEEEEEe-cCCEEEEEcCCC--CEEEEEcCC----CceeeeeEEcCCCEE-EE-EcC--------CCEEEEECCC-CC
Confidence            466666543 456899998874  322222221    112445667777763 33 222        1469999998 65


Q ss_pred             ccCcE-EeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcC
Q 008927          233 IQEPK-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK  311 (548)
Q Consensus       233 ~~~~~-~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspD  311 (548)
                         .. ...........+...+||.  +|+..         ..|+.++ . +|+.  ........    ..+..+...+|
T Consensus       168 ---~~~~~~~~~~~~~~~~~d~~g~--l~v~t---------~~l~~~d-~-~g~~--~~~~~~~~----~~~~~~~~~~~  225 (330)
T 3hxj_A          168 ---EKWRFKTNDAITSAASIGKDGT--IYFGS---------DKVYAIN-P-DGTE--KWNFYAGY----WTVTRPAISED  225 (330)
T ss_dssp             ---EEEEEECSSCCCSCCEECTTCC--EEEES---------SSEEEEC-T-TSCE--EEEECCSS----CCCSCCEECTT
T ss_pred             ---EeEEEecCCCceeeeEEcCCCE--EEEEe---------CEEEEEC-C-CCcE--EEEEccCC----cceeceEECCC
Confidence               32 2322233455677777886  34552         3588888 4 3531  12222211    34667788888


Q ss_pred             CcEEEEEeCCCCeeeEEEEeccCCee
Q 008927          312 GELFFVTDRKNGFWNLHKWIESNNEV  337 (548)
Q Consensus       312 G~L~~~sd~~~g~~~Ly~~d~~~g~~  337 (548)
                      |.|++.+.. .   .|+.++..+...
T Consensus       226 g~l~v~t~~-~---gl~~~~~~g~~~  247 (330)
T 3hxj_A          226 GTIYVTSLD-G---HLYAINPDGTEK  247 (330)
T ss_dssp             SCEEEEETT-T---EEEEECTTSCEE
T ss_pred             CeEEEEcCC-C---eEEEECCCCCEe
Confidence            887776653 2   578888644443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.16  E-value=0.027  Score=59.92  Aligned_cols=147  Identities=8%  Similarity=0.034  Sum_probs=77.1

Q ss_pred             CeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCC----------------------------
Q 008927          165 QRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD----------------------------  215 (548)
Q Consensus       165 ~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~----------------------------  215 (548)
                      +.+-++|.++  .+. .+|.-+     .+......||||++++..+++....                            
T Consensus       175 ~~vtvID~~t--~~v~~qI~Vg-----g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~  247 (595)
T 1fwx_A          175 NVFTAVDADK--WEVAWQVLVS-----GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA  247 (595)
T ss_dssp             EEEEEEETTT--TEEEEEEEES-----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred             ceEEEEECCC--CeEEEEEEeC-----CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence            3677888875  332 333322     1234567999999977766543110                            


Q ss_pred             -CCCceeEEEEEECCC--CCccCc--EEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCC-----Cc
Q 008927          216 -ALNSTTEIVAIALNG--QNIQEP--KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-----GD  285 (548)
Q Consensus       216 -~~~~~~~l~~idl~~--g~~~~~--~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~-----g~  285 (548)
                       .....+.+-+||.++  +.   .  ..+..+.. -....+|||||+++ ++ +.     ....+.++|++..     |+
T Consensus       248 Gk~~~i~~V~VID~~~~~~~---~~~~~Ipvg~~-PhGv~~sPDGk~v~-V~-~~-----~s~~VsVid~~~~~~~~~~~  316 (595)
T 1fwx_A          248 GDYQELNGVKVVDGRKEASS---LFTRYIPIANN-PHGCNMAPDKKHLC-VA-GK-----LSPTVTVLDVTRFDAVFYEN  316 (595)
T ss_dssp             TCSEEETTEEEEECSGGGCC---SSEEEEEEESS-CCCEEECTTSSEEE-EE-CT-----TSSBEEEEEGGGHHHHHHSC
T ss_pred             CCeeEECcEEEEeCcccCCc---eeEEEEecCCC-ceEEEEcCCCCEEE-Ee-CC-----CCCeEEEEECcccccccccc
Confidence             001123477788877  43   2  23333322 22347999999875 55 22     2467999998731     11


Q ss_pred             eeee-EEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccC
Q 008927          286 VYKR-VCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN  334 (548)
Q Consensus       286 ~~~~-~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~  334 (548)
                      +... ..+..-..+  .......|+||| .+|++..-++  ++.+++.++
T Consensus       317 l~~~~~v~~~v~vG--~gP~h~aF~~dG-~aY~t~~lds--qV~kwdi~~  361 (595)
T 1fwx_A          317 ADPRSAVVAEPELG--LGPLHTAFDGRG-NAYTSLFLDS--QVVKWNIED  361 (595)
T ss_dssp             CCGGGGEEECCBCC--SCEEEEEECTTS-EEEEEETTTT--EEEEEEHHH
T ss_pred             cCcccceEEEcCCC--CCcceEEECCCC-eEEEEEecCC--cEEEEEhhH
Confidence            1110 011110001  234567899999 5555543233  455666654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=96.15  E-value=0.043  Score=55.58  Aligned_cols=41  Identities=15%  Similarity=0.133  Sum_probs=26.0

Q ss_pred             CceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEe
Q 008927          272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTD  319 (548)
Q Consensus       272 ~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd  319 (548)
                      ...|++.|+.. +..  ...+.+..    ..+....|+|||+ |+..++
T Consensus       338 Dg~V~lwd~~~-~~~--~~~~~~~~----~~V~svafspdG~~LA~as~  379 (393)
T 4gq1_A          338 HGLIQLINTYE-KDS--NSIPIQLG----MPIVDFCWHQDGSHLAIATE  379 (393)
T ss_dssp             TTEEEEEETTC-TTC--CEEEEECS----SCEEEEEECTTSSEEEEEES
T ss_pred             CCEEEEEECCC-CcE--EEEecCCC----CcEEEEEEcCCCCEEEEEeC
Confidence            35788889874 431  22223322    4578899999999 555554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.13  E-value=0.93  Score=42.75  Aligned_cols=225  Identities=11%  Similarity=0.057  Sum_probs=117.7

Q ss_pred             CEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCcc
Q 008927          155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ  234 (548)
Q Consensus       155 ~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~  234 (548)
                      +.|++....++.|++++.++   +.+.+....  .......+.++++|+. ++. ...       ...|+++|.. ++  
T Consensus        31 g~l~v~~~~~~~v~~~~~~~---~~~~~~~~~--~~~~~~~i~~~~~g~l-~v~-~~~-------~~~v~~~d~~-g~--   93 (300)
T 2qc5_A           31 GKVWFTQHKANKISSLDQSG---RIKEFEVPT--PDAKVMCLIVSSLGDI-WFT-ENG-------ANKIGKLSKK-GG--   93 (300)
T ss_dssp             SCEEEEETTTTEEEEECTTS---CEEEEECSS--TTCCEEEEEECTTSCE-EEE-ETT-------TTEEEEECTT-SC--
T ss_pred             CCEEEEcCCCCeEEEECCCC---ceEEEECCC--CCCcceeEEECCCCCE-EEE-ecC-------CCeEEEECCC-CC--
Confidence            35777766667899998763   333332110  0123445678898873 332 321       1469999988 65  


Q ss_pred             CcEEeee--cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCC
Q 008927          235 EPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (548)
Q Consensus       235 ~~~~L~~--~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG  312 (548)
                       .+.+..  .........++++|+ | |+...      ....|+.++.+  |++.. ..+....    .....+.+++||
T Consensus        94 -~~~~~~~~~~~~~~~i~~~~~g~-l-~v~~~------~~~~i~~~~~~--g~~~~-~~~~~~~----~~~~~i~~d~~g  157 (300)
T 2qc5_A           94 -FTEYPLPQPDSGPYGITEGLNGD-I-WFTQL------NGDRIGKLTAD--GTIYE-YDLPNKG----SYPAFITLGSDN  157 (300)
T ss_dssp             -EEEEECSSTTCCEEEEEECSTTC-E-EEEET------TTTEEEEECTT--SCEEE-EECSSTT----CCEEEEEECTTS
T ss_pred             -eEEecCCCCCCCCccceECCCCC-E-EEEcc------CCCeEEEECCC--CCEEE-ccCCCCC----CCceeEEECCCC
Confidence             443332  122344567888887 3 34422      13468888765  44221 1122111    334567788999


Q ss_pred             cEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCc
Q 008927          313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS  392 (548)
Q Consensus       313 ~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~  392 (548)
                      +||+.... .  ..|++++. +++...+... .....|      ....+.    .++.|++...  +...|+++|. +++
T Consensus       158 ~l~v~~~~-~--~~i~~~~~-~g~~~~~~~~-~~~~~~------~~i~~d----~~g~l~v~~~--~~~~i~~~~~-~g~  219 (300)
T 2qc5_A          158 ALWFTENQ-N--NSIGRITN-TGKLEEYPLP-TNAAAP------VGITSG----NDGALWFVEI--MGNKIGRITT-TGE  219 (300)
T ss_dssp             SEEEEETT-T--TEEEEECT-TCCEEEEECS-STTCCE------EEEEEC----TTSSEEEEET--TTTEEEEECT-TCC
T ss_pred             CEEEEecC-C--CeEEEECC-CCcEEEeeCC-CCCCCc------ceEEEC----CCCCEEEEcc--CCCEEEEEcC-CCc
Confidence            86655432 2  36889988 6665543211 111111      112332    2345655432  2346888888 566


Q ss_pred             eEeecCC--CceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          393 LSLLDIP--FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       393 ~~~l~~~--~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      ...+..+  ......+  ++++ .+++...   ....|++++. +++
T Consensus       220 ~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~---~~~~i~~~~~-~g~  261 (300)
T 2qc5_A          220 ISEYDIPTPNARPHAITAGKNS-EIWFTEW---GANQIGRITN-DNT  261 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECSTT-CEEEEET---TTTEEEEECT-TSC
T ss_pred             EEEEECCCCCCCceEEEECCCC-CEEEecc---CCCeEEEECC-CCc
Confidence            5554322  2333444  3344 4555432   2467888887 344

>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17

Probab=96.07  E-value=0.0039  Score=66.55  Aligned_cols=60  Identities=20%  Similarity=0.306  Sum_probs=39.4

Q ss_pred             ccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccC-ccChHHHHHHh------cCcEEEEeCCCCCC
Q 008927          468 TEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTS------RGWAFVDVNYGGST  536 (548)
Q Consensus       468 s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~-~~~~~~Q~~as------rGyaVl~~NyRGSt  536 (548)
                      +. |...+  -+|.|.+.  .  +++++|+||++|||....-.. .++.  +.|+.      .|++|+.+|||.+.
T Consensus       102 se-dcl~l--~v~~P~~~--~--~~~~~Pviv~iHGGg~~~g~~~~~~~--~~l~~~~l~~~~~~vvv~~nYRl~~  168 (544)
T 1thg_A          102 NE-DCLYL--NVFRPAGT--K--PDAKLPVMVWIYGGAFVYGSSAAYPG--NSYVKESINMGQPVVFVSINYRTGP  168 (544)
T ss_dssp             CS-CCCEE--EEEEETTC--C--TTCCEEEEEEECCCTTCCSGGGGCCS--HHHHHHHHHTTCCCEEEEECCCCHH
T ss_pred             CC-CCeEE--EEEeCCCC--C--CCCCCcEEEEECCCccccCCccccCc--hHHHHHHhhcCCCEEEEeCCCCCCc
Confidence            44 66554  56677542  1  256789999999998754332 2332  33443      38999999999765

>1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A*

Probab=96.07  E-value=0.0092  Score=57.52  Aligned_cols=68  Identities=12%  Similarity=0.145  Sum_probs=44.5

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccCh---HHHHHHhcCcEEEEeCCCCCCC
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~---~~Q~~asrGyaVl~~NyRGStG  537 (548)
                      .+.+++.|...|.+++.++ +|.   +       .|+||++||++.......|..   ..++++++||+|+.||.+|+++
T Consensus         6 ~~~~~~~s~~~~~~~~v~~-~p~---~-------~~~v~llHG~~~~~~~~~w~~~~~~~~~l~~~~~~vv~pd~~~~~~   74 (280)
T 1dqz_A            6 VEYLQVPSASMGRDIKVQF-QGG---G-------PHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSF   74 (280)
T ss_dssp             EEEEEEEETTTTEEEEEEE-ECC---S-------SSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTCT
T ss_pred             EEEEEEECcccCceeEEEE-cCC---C-------CCEEEEECCCCCCCCcccccccCcHHHHHhcCCeEEEEECCCCCcc
Confidence            3566777653577777664 342   2       258999999964222222321   2367888999999999998766


Q ss_pred             CC
Q 008927          538 LS  539 (548)
Q Consensus       538 yG  539 (548)
                      |.
T Consensus        75 ~~   76 (280)
T 1dqz_A           75 YT   76 (280)
T ss_dssp             TS
T ss_pred             cc
Confidence            53

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.02  E-value=2  Score=45.72  Aligned_cols=53  Identities=8%  Similarity=-0.053  Sum_probs=32.8

Q ss_pred             eEEEEEEECCCCceE-eecCCCcee-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          380 RSYLGILDDFGHSLS-LLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       380 ~~~L~~~dl~~g~~~-~l~~~~~~~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      ...|+.+|+.+|++. ....+.... ..+...++.+++ .+   .-..|+.+|.++++.
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~-g~---~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWY-AT---LDGYLKALDNKDGKE  497 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE-EC---TTSEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEE-Ec---CCCeEEEEECCCCCE
Confidence            468999999999754 333222111 122445666655 33   247899999988874

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.00  E-value=2.1  Score=45.65  Aligned_cols=56  Identities=11%  Similarity=0.051  Sum_probs=31.3

Q ss_pred             eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE
Q 008927          324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS  394 (548)
Q Consensus       324 ~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~  394 (548)
                      ...|+.+|+.+|++.--.+..    .+.+.   .  .+..   .++.||+ ...  ...|+.+|.++|++.
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~----~~~~~---~--~~~t---~gg~v~~-g~~--dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEK----FAAWG---G--TLYT---KGGLVWY-ATL--DGYLKALDNKDGKEL  498 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES----SCCCS---B--CEEE---TTTEEEE-ECT--TSEEEEEETTTCCEE
T ss_pred             CCeEEEEECCCCCEEEEecCC----CCccc---e--eEEE---CCCEEEE-EcC--CCeEEEEECCCCCEE
Confidence            357899998888764322211    11111   0  1111   4566655 333  347899999999764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.99  E-value=0.88  Score=44.69  Aligned_cols=167  Identities=10%  Similarity=0.038  Sum_probs=92.7

Q ss_pred             eeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCC----CCCCceecceee---CCCCCEEEEEEeccC-----CC
Q 008927          148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY----GEPLVSYADGIF---DPRFNRYVTVREDRR-----QD  215 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~----~~~~~~~~~~~~---SpDG~~i~~v~~~~~-----~~  215 (548)
                      ..|-..+++++|++-..+.|+++++++  +....++...    .++......+.|   +|+|+ |+.+.....     +.
T Consensus        18 ~~wd~~~g~~~vs~l~~g~V~~~~~~~--~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           18 TIYDRTRQVFYQSNLYKGRIEVYNPKT--QSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTT--CCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEETTTTCTTSC
T ss_pred             ccCcCCCCEEEEEeccCCEEEEEcCCC--CeEEEEecCCccccCCCcceeeEEEEeccCCCCc-EEEEEccccccccccc
Confidence            345455678999988889999999985  4444442210    111234567788   68854 444333210     00


Q ss_pred             CCCceeEEEEEECC---CCCccCcEEeee------c-------C-CceeeeEECCCCCEEEEEEecCCCCCCCC-ceEEE
Q 008927          216 ALNSTTEIVAIALN---GQNIQEPKVLVS------G-------S-DFYAFPRMDPRGERMAWIEWHHPNMPWDK-AELWV  277 (548)
Q Consensus       216 ~~~~~~~l~~idl~---~g~~~~~~~L~~------~-------~-~~~~~p~~SPDGk~La~~~~~~~~~p~~~-~~L~v  277 (548)
                      .......|+++|+.   +++   ......      +       . .........++|.  +|+.-..      . ..|+.
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~---~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~------~~~~I~r  163 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSK---PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFAL------GMPAIAR  163 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCC---CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEE------SSCEEEE
T ss_pred             ccCCCCEEEEEcCCcCCCCC---EEEEecCccccccccccccccccCCceeEECCCCC--EEEeCCC------CCCeEEE
Confidence            00124689999999   666   332221      1       1 1234667899998  4554222      2 46887


Q ss_pred             EEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEecc
Q 008927          278 GYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES  333 (548)
Q Consensus       278 ~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~  333 (548)
                      ++.+  |+......+...............+.|||+++++.+. .  ..|+++|+.
T Consensus       164 V~pd--G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~--g~L~~fD~~  214 (334)
T 2p9w_A          164 VSAD--GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-P--RALTAFDVS  214 (334)
T ss_dssp             ECTT--SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-S--SSEEEEECS
T ss_pred             EeCC--CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-C--CeEEEEcCC
Confidence            7765  4311111111111000023456789999996666654 3  469999986

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.96  E-value=0.15  Score=50.89  Aligned_cols=121  Identities=15%  Similarity=0.048  Sum_probs=71.7

Q ss_pred             EEEEEeCCC--C--eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCC-C---------CCCcee
Q 008927          156 TVIFSNYKD--Q--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-D---------ALNSTT  221 (548)
Q Consensus       156 ~i~F~~~~~--~--~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~-~---------~~~~~~  221 (548)
                      +|+..+-..  .  .||+++.++  +..+.+.........+..|....++|..  |+..++.- .         ......
T Consensus       128 ~L~Vvnh~~~~s~ielf~~d~~~--~~~~~~~~~~g~~~~~pND~~v~~~G~f--yvt~~~~ftd~~~~~~e~~~~~~~g  203 (355)
T 3sre_A          128 YLLVVNHPGSSSTVEVFKFQEEE--KSLLHLKTIRHKLLPSVNDIVAVGPEHF--YATNDHYFIDPYLKSWEMHLGLAWS  203 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTT--TEEEEEEEECCTTCSSEEEEEEEETTEE--EEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred             EEEEEECCCCCCeEEEEEEECCC--CEEEEEeccccCCCCCCceEEEeCCCCE--EecCCcEeCCcccccchhhccCCcc
Confidence            455555332  2  588888765  4434333321112234667889999863  33333210 0         011347


Q ss_pred             EEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEE
Q 008927          222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV  292 (548)
Q Consensus       222 ~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l  292 (548)
                      .||.+|.  ++   .+++..+-.+-...+|||||+.|++....       ...|+.++++.+|++...+.+
T Consensus       204 ~vyr~d~--~~---~~~~~~~l~~pNGia~spDg~~lYvadt~-------~~~I~~~~~~~~g~l~~~~~~  262 (355)
T 3sre_A          204 FVTYYSP--ND---VRVVAEGFDFANGINISPDGKYVYIAELL-------AHKIHVYEKHANWTLTPLRVL  262 (355)
T ss_dssp             EEEEECT--TC---CEEEEEEESSEEEEEECTTSSEEEEEEGG-------GTEEEEEEECTTSCEEEEEEE
T ss_pred             EEEEEEC--Ce---EEEeecCCcccCcceECCCCCEEEEEeCC-------CCeEEEEEECCCCcEecCEEE
Confidence            8999987  35   67776665555678999999988755421       458999999866765444444

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=95.94  E-value=0.2  Score=49.84  Aligned_cols=55  Identities=11%  Similarity=0.007  Sum_probs=31.6

Q ss_pred             ceeeCC---CCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCc---eeeeEECCCCCEEEE
Q 008927          195 DGIFDP---RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF---YAFPRMDPRGERMAW  260 (548)
Q Consensus       195 ~~~~Sp---DG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~---~~~p~~SPDGk~La~  260 (548)
                      ...|||   |+..|+-...|         ..|.++|+++|+.  .+.|..+...   ...-.|||||+.++.
T Consensus       183 ~l~fs~~~g~~~~LaSgS~D---------~TIkIWDl~TGk~--l~tL~g~~~~v~~v~~vafSpdG~~lvs  243 (356)
T 2w18_A          183 ILTFAEVQGMQEALLGTTIM---------NNIVIWNLKTGQL--LKKMHIDDSYQASVCHKAYSEMGLLFIV  243 (356)
T ss_dssp             EEEEEEEETSTTEEEEEETT---------SEEEEEETTTCCE--EEEEECCC---CCCEEEEEEETTEEEEE
T ss_pred             eEEeeccCCCCceEEEecCC---------CcEEEEECCCCcE--EEEEcCCCcceeeeEEEEECCCCCEEEE
Confidence            445666   55665554333         4688889999972  3444432221   223368999987753

>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI}

Probab=95.91  E-value=0.0026  Score=68.10  Aligned_cols=41  Identities=27%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             CcEEEEEccCccccccCcc-ChHHHHHHhcCcEEEEeCCCCC
Q 008927          495 PPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       495 ~Pliv~iHGGP~~~~~~~~-~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +|+||++|||....-.... ....++|+++|++|+.+|||.+
T Consensus       115 ~Pviv~iHGGg~~~g~~~~~~~~~~~l~~~g~vvv~~nYRl~  156 (551)
T 2fj0_A          115 LPVLVFIHGGGFAFGSGDSDLHGPEYLVSKDVIVITFNYRLN  156 (551)
T ss_dssp             EEEEEEECCSTTTSCCSCTTTCBCTTGGGGSCEEEEECCCCH
T ss_pred             CCEEEEEcCCccccCCCcccccCHHHHHhCCeEEEEeCCcCC
Confidence            8999999999864433221 2345678999999999999953

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.89  E-value=1.6  Score=43.28  Aligned_cols=227  Identities=12%  Similarity=0.083  Sum_probs=112.4

Q ss_pred             eEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      ...+++.|++.. .++.|+.++.++  |+.+ .....    ......+... + ..|++. ..        ...|+.+|+
T Consensus        99 ~~~~~~~v~v~~-~~g~l~a~d~~t--G~~~W~~~~~----~~~~~~p~~~-~-~~v~v~-~~--------~g~l~~~d~  160 (376)
T 3q7m_A           99 VTVSGGHVYIGS-EKAQVYALNTSD--GTVAWQTKVA----GEALSRPVVS-D-GLVLIH-TS--------NGQLQALNE  160 (376)
T ss_dssp             EEEETTEEEEEE-TTSEEEEEETTT--CCEEEEEECS----SCCCSCCEEE-T-TEEEEE-CT--------TSEEEEEET
T ss_pred             ceEeCCEEEEEc-CCCEEEEEECCC--CCEEEEEeCC----CceEcCCEEE-C-CEEEEE-cC--------CCeEEEEEC
Confidence            345677777654 457899999876  5443 22111    0112233333 3 344442 22        147999999


Q ss_pred             CCCCccCcEEeeecCC-c-----eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCc---
Q 008927          229 NGQNIQEPKVLVSGSD-F-----YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI---  299 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~-~-----~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~---  299 (548)
                      ++|+   ...-..... .     ...|... +| .| |+..       ....|+.++.+ +|+..-...+.... ..   
T Consensus       161 ~tG~---~~W~~~~~~~~~~~~~~~~~~~~-~~-~v-~~g~-------~~g~l~~~d~~-tG~~~w~~~~~~~~-~~~~~  225 (376)
T 3q7m_A          161 ADGA---VKWTVNLDMPSLSLRGESAPTTA-FG-AA-VVGG-------DNGRVSAVLME-QGQMIWQQRISQAT-GSTEI  225 (376)
T ss_dssp             TTCC---EEEEEECCC-----CCCCCCEEE-TT-EE-EECC-------TTTEEEEEETT-TCCEEEEEECCC--------
T ss_pred             CCCc---EEEEEeCCCCceeecCCCCcEEE-CC-EE-EEEc-------CCCEEEEEECC-CCcEEEEEecccCC-CCccc
Confidence            9987   332222211 1     1344444 33 34 3431       13578888887 35421111111100 00   


Q ss_pred             ---ccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEE
Q 008927          300 ---VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR  376 (548)
Q Consensus       300 ---~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~  376 (548)
                         ......|.. .++.+|+.+..  |  .|+.+|+++|+..--.+.    .  ..      ..+..   +++.|++...
T Consensus       226 ~~~~~~~~~p~~-~~~~v~~~~~~--g--~l~~~d~~tG~~~w~~~~----~--~~------~~~~~---~~~~l~~~~~  285 (376)
T 3q7m_A          226 DRLSDVDTTPVV-VNGVVFALAYN--G--NLTALDLRSGQIMWKREL----G--SV------NDFIV---DGNRIYLVDQ  285 (376)
T ss_dssp             ----CCCCCCEE-ETTEEEEECTT--S--CEEEEETTTCCEEEEECC----C--CE------EEEEE---ETTEEEEEET
T ss_pred             ccccccCCCcEE-ECCEEEEEecC--c--EEEEEECCCCcEEeeccC----C--CC------CCceE---ECCEEEEEcC
Confidence               001123333 24446555432  2  688999988875432211    0  00      01111   4667766542


Q ss_pred             eCCeEEEEEEECCCCceEee-c-CCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          377 QNGRSYLGILDDFGHSLSLL-D-IPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       377 ~~g~~~L~~~dl~~g~~~~l-~-~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                         ...|+.+|.++|+..-- . .+...+......++.+++...    ...|+.+|+++++.
T Consensus       286 ---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~----~g~l~~~d~~tG~~  340 (376)
T 3q7m_A          286 ---NDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDS----EGYLHWINVEDGRF  340 (376)
T ss_dssp             ---TCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECT----TSEEEEEETTTCCE
T ss_pred             ---CCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeC----CCeEEEEECCCCcE
Confidence               23589999999976422 2 122222223345677765532    36899999988874

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.86  E-value=1  Score=46.26  Aligned_cols=158  Identities=10%  Similarity=0.115  Sum_probs=86.6

Q ss_pred             cceeeCCC--CCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCC
Q 008927          194 ADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (548)
Q Consensus       194 ~~~~~SpD--G~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~  271 (548)
                      ..+.|+|+  +..|+++ ...        ..|+++|++++.   .+.+......-...++++||+ |++..+....   .
T Consensus       142 ~gvavd~~s~~g~Lyv~-D~~--------~~I~~id~~~g~---v~~~~~~~~~P~giavd~dG~-lyVad~~~~~---~  205 (433)
T 4hw6_A          142 WRMMFDPNSNYDDLYWV-GQR--------DAFRHVDFVNQY---VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSD---T  205 (433)
T ss_dssp             CEEEECTTTTTCEEEEE-CBT--------SCEEEEETTTTE---EEEECCCCSCEEEEEECTTCC-EEEEECCSCT---T
T ss_pred             ceEEEccccCCCEEEEE-eCC--------CCEEEEECCCCE---EEEeecCCCCccEEEECCCCC-EEEEcCCCCc---c
Confidence            35679995  5555443 321        479999998887   666654433445678999999 5443321110   1


Q ss_pred             CceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc-CCcEEEEEeCCCCeeeEEEEeccCCee-EeecccccccCC
Q 008927          272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSR  349 (548)
Q Consensus       272 ~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp-DG~L~~~sd~~~g~~~Ly~~d~~~g~~-~~l~~~~~d~~~  349 (548)
                      ...++.++..  +.......+...     .......++| +|.||+. |.  +...|+++++++++. +.+...    ..
T Consensus       206 ~~gv~~~~~~--~~~~~~~~~~~~-----~~P~giavd~~~G~lyv~-d~--~~~~V~~~d~~~g~~~~~~~~~----~~  271 (433)
T 4hw6_A          206 NTGIYLFTRA--SGFTERLSLCNA-----RGAKTCAVHPQNGKIYYT-RY--HHAMISSYDPATGTLTEEEVMM----DT  271 (433)
T ss_dssp             SEEEEEECGG--GTTCCEEEEEEC-----SSBCCCEECTTTCCEEEC-BT--TCSEEEEECTTTCCEEEEEEEC----SC
T ss_pred             cceEEEEECC--CCeecccccccc-----CCCCEEEEeCCCCeEEEE-EC--CCCEEEEEECCCCeEEEEEecc----CC
Confidence            2335555443  221111222221     2345678889 5656654 43  224799999987776 444321    11


Q ss_pred             CcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECC
Q 008927          350 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF  389 (548)
Q Consensus       350 p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~  389 (548)
                      ..|..   ...+.|   +++.||++-  .+...|++++.+
T Consensus       272 ~~~~~---~ia~dp---dG~~LYvad--~~~~~I~~~~~d  303 (433)
T 4hw6_A          272 KGSNF---HIVWHP---TGDWAYIIY--NGKHCIYRVDYN  303 (433)
T ss_dssp             CSSCE---EEEECT---TSSEEEEEE--TTTTEEEEEEBC
T ss_pred             CCCcc---cEEEeC---CCCEEEEEe--CCCCEEEEEeCC
Confidence            12211   244543   677777654  344567787754

>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12

Probab=95.84  E-value=0.017  Score=54.80  Aligned_cols=55  Identities=20%  Similarity=0.357  Sum_probs=40.8

Q ss_pred             eeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       466 ~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +++. ||.+++-..+           + .-|.||++||.+....  .|...++.|+++||.|+.+|+||-
T Consensus         3 ~~~~-~g~~l~y~~~-----------g-~~~~vvllHG~~~~~~--~~~~~~~~L~~~g~~vi~~D~~G~   57 (273)
T 1a8s_A            3 FTTR-DGTQIYYKDW-----------G-SGQPIVFSHGWPLNAD--SWESQMIFLAAQGYRVIAHDRRGH   57 (273)
T ss_dssp             EECT-TSCEEEEEEE-----------S-CSSEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEEECCTTS
T ss_pred             EecC-CCcEEEEEEc-----------C-CCCEEEEECCCCCcHH--HHhhHHhhHhhCCcEEEEECCCCC
Confidence            4565 8888764332           1 1267999999986543  466677899999999999999984

>2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A*

Probab=95.81  E-value=0.022  Score=56.81  Aligned_cols=55  Identities=25%  Similarity=0.335  Sum_probs=43.7

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ||.+++.+..-|.+        +..|.||++||.+....  .|....+.|+++||.|+.+|+||.
T Consensus        11 ~g~~l~y~~~G~~~--------~~~~~vv~~hG~~~~~~--~~~~~~~~l~~~g~~vi~~d~~g~   65 (356)
T 2e3j_A           11 RGTRIHAVADSPPD--------QQGPLVVLLHGFPESWY--SWRHQIPALAGAGYRVVAIDQRGY   65 (356)
T ss_dssp             TTEEEEEEEECCTT--------CCSCEEEEECCTTCCGG--GGTTTHHHHHHTTCEEEEECCTTS
T ss_pred             CCeEEEEEEecCCC--------CCCCEEEEECCCCCcHH--HHHHHHHHHHHcCCEEEEEcCCCC
Confidence            89999988877632        23488999999986543  466677889999999999999984

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=95.74  E-value=1.8  Score=43.74  Aligned_cols=189  Identities=9%  Similarity=0.077  Sum_probs=100.3

Q ss_pred             eeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceE
Q 008927          197 IFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL  275 (548)
Q Consensus       197 ~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L  275 (548)
                      .+++||+.|+....+         ..|.++|+.+++   ...... ....+....|  ||+.|+-.. .       ...|
T Consensus       138 ~~~~d~~~l~~g~~d---------g~i~iwd~~~~~---~~~~~~~h~~~v~~l~~--~~~~l~sg~-~-------dg~i  195 (435)
T 1p22_A          138 CLQYDDQKIVSGLRD---------NTIKIWDKNTLE---CKRILTGHTGSVLCLQY--DERVIITGS-S-------DSTV  195 (435)
T ss_dssp             EEECCSSEEEEEESS---------SCEEEEESSSCC---EEEEECCCSSCEEEEEC--CSSEEEEEE-T-------TSCE
T ss_pred             EEEECCCEEEEEeCC---------CeEEEEeCCCCe---EEEEEcCCCCcEEEEEE--CCCEEEEEc-C-------CCeE
Confidence            456688887775433         358888998887   443333 3333444444  888776443 1       3468


Q ss_pred             EEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCccccc
Q 008927          276 WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFG  355 (548)
Q Consensus       276 ~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~  355 (548)
                      .+.++.. ++.  ...+.+..    ..+....|++  .+++.... +|  .|..+|+.+++...+.....  +....+  
T Consensus       196 ~vwd~~~-~~~--~~~~~~h~----~~v~~l~~~~--~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~--~~~~~v--  259 (435)
T 1p22_A          196 RVWDVNT-GEM--LNTLIHHC----EAVLHLRFNN--GMMVTCSK-DR--SIAVWDMASPTDITLRRVLV--GHRAAV--  259 (435)
T ss_dssp             EEEESSS-CCE--EEEECCCC----SCEEEEECCT--TEEEEEET-TS--CEEEEECSSSSCCEEEEEEC--CCSSCE--
T ss_pred             EEEECCC-CcE--EEEEcCCC----CcEEEEEEcC--CEEEEeeC-CC--cEEEEeCCCCCCceeeeEec--CCCCcE--
Confidence            8889884 542  33344433    4566677753  34444444 44  45666766654321110000  001111  


Q ss_pred             CcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCC
Q 008927          356 INSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDH  434 (548)
Q Consensus       356 ~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~  434 (548)
                       ..+.+     +++.|+ +...++  .|.++|+.+++.. .+......+..+..+++.++ +++.   ...|.++|+.++
T Consensus       260 -~~~~~-----~~~~l~-s~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~-~g~~---dg~i~iwd~~~~  326 (435)
T 1p22_A          260 -NVVDF-----DDKYIV-SASGDR--TIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVV-SGSS---DNTIRLWDIECG  326 (435)
T ss_dssp             -EEEEE-----ETTEEE-EEETTS--EEEEEETTTCCEEEEEECCSSCEEEEEEETTEEE-EEET---TSCEEEEETTTC
T ss_pred             -EEEEe-----CCCEEE-EEeCCC--eEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEE-EEeC---CCeEEEEECCCC
Confidence             11233     455554 444444  4667788877643 44433334555555666544 3332   357888998877


Q ss_pred             ce
Q 008927          435 KL  436 (548)
Q Consensus       435 ~~  436 (548)
                      +.
T Consensus       327 ~~  328 (435)
T 1p22_A          327 AC  328 (435)
T ss_dssp             CE
T ss_pred             CE
Confidence            53

>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis}

Probab=95.73  E-value=0.03  Score=54.17  Aligned_cols=62  Identities=21%  Similarity=0.212  Sum_probs=43.7

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGL  538 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGy  538 (548)
                      +...++.  +|.+++.+..-|.          ..|.||++||++....  .|...++.|+. ||.|+.+|+||..|.
T Consensus        46 ~~~~v~~--~~~~~~~~~~g~~----------~~~~vv~lHG~~~~~~--~~~~~~~~L~~-g~~vi~~D~~G~gG~  107 (306)
T 2r11_A           46 KSFYIST--RFGQTHVIASGPE----------DAPPLVLLHGALFSST--MWYPNIADWSS-KYRTYAVDIIGDKNK  107 (306)
T ss_dssp             EEEEECC--TTEEEEEEEESCT----------TSCEEEEECCTTTCGG--GGTTTHHHHHH-HSEEEEECCTTSSSS
T ss_pred             ceEEEec--CCceEEEEeeCCC----------CCCeEEEECCCCCCHH--HHHHHHHHHhc-CCEEEEecCCCCCCC
Confidence            4455555  5667777664431          2378999999986554  36666778887 999999999996443

>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27

Probab=95.72  E-value=0.0055  Score=56.48  Aligned_cols=58  Identities=19%  Similarity=0.179  Sum_probs=41.0

Q ss_pred             EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       465 ~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      .+... +|  +..++|.|.        + +.|+||++||+.....  .|....+.|+++||.|+.+|+||..
T Consensus         6 ~~~~~-~g--~~~~~~~~~--------~-~~~~vv~~hG~~~~~~--~~~~~~~~l~~~G~~v~~~d~~g~g   63 (238)
T 1ufo_A            6 ERLTL-AG--LSVLARIPE--------A-PKALLLALHGLQGSKE--HILALLPGYAERGFLLLAFDAPRHG   63 (238)
T ss_dssp             EEEEE-TT--EEEEEEEES--------S-CCEEEEEECCTTCCHH--HHHHTSTTTGGGTEEEEECCCTTST
T ss_pred             ccccc-CC--EEEEEEecC--------C-CccEEEEECCCcccch--HHHHHHHHHHhCCCEEEEecCCCCc
Confidence            33443 66  455677773        2 4599999999975443  3444567789999999999999853

>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A*

Probab=95.69  E-value=0.0041  Score=62.93  Aligned_cols=68  Identities=10%  Similarity=0.031  Sum_probs=48.0

Q ss_pred             EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHH----hcCc---EEEEeCCCCC
Q 008927          464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT----SRGW---AFVDVNYGGS  535 (548)
Q Consensus       464 i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~a----srGy---aVl~~NyRGS  535 (548)
                      .++.+. ||.+++...+.|.+... .++.++.|+||++||.+....  .|...++.|+    ..||   .|+.+|+||.
T Consensus        23 ~~~~~~-dg~~l~~~~~g~~~~~~-~~~~~~~~~vvllHG~~~~~~--~~~~~~~~L~~~~~~~G~~~~~vi~~D~~G~   97 (398)
T 2y6u_A           23 STLCAT-DRLELTYDVYTSAERQR-RSRTATRLNLVFLHGSGMSKV--VWEYYLPRLVAADAEGNYAIDKVLLIDQVNH   97 (398)
T ss_dssp             SBSSTT-CCCEEEEEEEEESCTTT-CCTTCEEEEEEEECCTTCCGG--GGGGGGGGSCCCBTTTTEEEEEEEEECCTTS
T ss_pred             ccccCC-CceEEEEEEEecCCCCC-CCCCCCCCeEEEEcCCCCcHH--HHHHHHHHHHHhhhhcCcceeEEEEEcCCCC
Confidence            446676 99999999998753100 001234489999999986554  4556677888    4599   9999999983

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=95.63  E-value=1.1  Score=43.09  Aligned_cols=167  Identities=12%  Similarity=0.099  Sum_probs=84.1

Q ss_pred             eEEEEEECCCCCccCcEE-eeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCc
Q 008927          221 TEIVAIALNGQNIQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI  299 (548)
Q Consensus       221 ~~l~~idl~~g~~~~~~~-L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~  299 (548)
                      ..|+.+|.+ |+   ... ..........+...+||+ | |+...       ...|+.++.+  |+.  ........   
T Consensus       117 ~~l~~~d~~-g~---~~~~~~~~~~~~~~~~~~~~g~-l-~vgt~-------~~~l~~~d~~--g~~--~~~~~~~~---  176 (330)
T 3hxj_A          117 GHLYAINTD-GT---EKWRFKTKKAIYATPIVSEDGT-I-YVGSN-------DNYLYAINPD--GTE--KWRFKTND---  176 (330)
T ss_dssp             SEEEEECTT-SC---EEEEEECSSCCCSCCEECTTSC-E-EEECT-------TSEEEEECTT--SCE--EEEEECSS---
T ss_pred             CEEEEEcCC-CC---EEEEEcCCCceeeeeEEcCCCE-E-EEEcC-------CCEEEEECCC--CCE--eEEEecCC---
Confidence            469999988 65   322 222333455677888887 3 44421       3578888876  432  11122111   


Q ss_pred             ccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC
Q 008927          300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (548)
Q Consensus       300 ~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g  379 (548)
                       ..+..+...++|.|++.+      ..|+.++ .+++...-.....    ..    .......    .++.|++.. .+ 
T Consensus       177 -~~~~~~~~d~~g~l~v~t------~~l~~~d-~~g~~~~~~~~~~----~~----~~~~~~~----~~g~l~v~t-~~-  234 (330)
T 3hxj_A          177 -AITSAASIGKDGTIYFGS------DKVYAIN-PDGTEKWNFYAGY----WT----VTRPAIS----EDGTIYVTS-LD-  234 (330)
T ss_dssp             -CCCSCCEECTTCCEEEES------SSEEEEC-TTSCEEEEECCSS----CC----CSCCEEC----TTSCEEEEE-TT-
T ss_pred             -CceeeeEEcCCCEEEEEe------CEEEEEC-CCCcEEEEEccCC----cc----eeceEEC----CCCeEEEEc-CC-
Confidence             345667777888877665      3588888 4554332111100    00    0111221    234565543 22 


Q ss_pred             eEEEEEEECCCCceEeecCCCceeEeeeec-CCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          380 RSYLGILDDFGHSLSLLDIPFTDIDNITLG-NDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       380 ~~~L~~~dl~~g~~~~l~~~~~~~~~~s~d-~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                       ..|+.+|..+........+......+..+ ++.|++...    ...|+++|. +++
T Consensus       235 -~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~----~ggl~~~d~-~g~  285 (330)
T 3hxj_A          235 -GHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSY----DGHLYAINP-DGT  285 (330)
T ss_dssp             -TEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECT----TCEEEEECT-TSC
T ss_pred             -CeEEEECCCCCEeEEeeCCCCccccceEcCCCeEEEecC----CCCEEEECC-CCc
Confidence             24777776444444443322222222223 556655432    247999986 444

>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A

Probab=95.47  E-value=0.02  Score=59.53  Aligned_cols=57  Identities=14%  Similarity=0.063  Sum_probs=42.6

Q ss_pred             EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       464 i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +.+.+. ||..++-...           + ..|.||++||++....  .|....+.|+++||.|+.+|+||.
T Consensus         6 ~~~~~~-dG~~l~y~~~-----------G-~gp~VV~lHG~~~~~~--~~~~l~~~La~~Gy~Vi~~D~rG~   62 (456)
T 3vdx_A            6 VGQENS-TSIDLYYEDH-----------G-TGVPVVLIHGFPLSGH--SWERQSAALLDAGYRVITYDRRGF   62 (456)
T ss_dssp             EEEETT-EEEEEEEEEE-----------S-SSEEEEEECCTTCCGG--GGTTHHHHHHHHTEEEEEECCTTS
T ss_pred             eccccc-CCeEEEEEEe-----------C-CCCEEEEECCCCCcHH--HHHHHHHHHHHCCcEEEEECCCCC
Confidence            445565 8888773322           1 2388999999987554  466778999999999999999984

>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A

Probab=95.45  E-value=0.028  Score=53.21  Aligned_cols=55  Identities=20%  Similarity=0.348  Sum_probs=40.6

Q ss_pred             eeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       466 ~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      |.+. ||.+|+-..+-           +. |.||++||.+....  .|...++.|+++||.|+.+|+||-
T Consensus         3 ~~~~-~g~~l~y~~~G-----------~g-~~vvllHG~~~~~~--~w~~~~~~l~~~g~~vi~~D~~G~   57 (271)
T 3ia2_A            3 FVAK-DGTQIYFKDWG-----------SG-KPVLFSHGWLLDAD--MWEYQMEYLSSRGYRTIAFDRRGF   57 (271)
T ss_dssp             EECT-TSCEEEEEEES-----------SS-SEEEEECCTTCCGG--GGHHHHHHHHTTTCEEEEECCTTS
T ss_pred             EEcC-CCCEEEEEccC-----------CC-CeEEEECCCCCcHH--HHHHHHHHHHhCCceEEEecCCCC
Confidence            5566 89888754432           12 45788999876543  466677889999999999999983

>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans}

Probab=95.43  E-value=0.024  Score=54.27  Aligned_cols=63  Identities=11%  Similarity=0.037  Sum_probs=46.3

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ..+...+.+. ||.+++...+-+.+         .-|.||++||.+....  .|...+..|++ ||.|+.+|.||-
T Consensus         4 ~~~~~~~~~~-~g~~l~~~~~g~~~---------~~~~vvllHG~~~~~~--~~~~~~~~L~~-~~~vi~~Dl~G~   66 (285)
T 3bwx_A            4 EYEDRYWTSS-DGLRLHFRAYEGDI---------SRPPVLCLPGLTRNAR--DFEDLATRLAG-DWRVLCPEMRGR   66 (285)
T ss_dssp             SSEEEEEECT-TSCEEEEEEECBCT---------TSCCEEEECCTTCCGG--GGHHHHHHHBB-TBCEEEECCTTB
T ss_pred             ccccCeeecC-CCceEEEEEcCCCC---------CCCcEEEECCCCcchh--hHHHHHHHhhc-CCEEEeecCCCC
Confidence            3456677776 99999988875521         1266899999886543  45666677766 999999999984

>1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A*

Probab=95.36  E-value=0.01  Score=58.83  Aligned_cols=50  Identities=16%  Similarity=0.263  Sum_probs=36.6

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccC-------hHHHHHHhcCcEEEEeCCCC
Q 008927          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-------LSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~-------~~~Q~~asrGyaVl~~NyRG  534 (548)
                      ++..++.|.+       .++ |.||++||+.....  .|.       ...+.|+++||.|+.+|+||
T Consensus        50 ~~~~~~~p~~-------~~~-~~vvl~HG~g~~~~--~~~~~pdg~~~~~~~l~~~G~~V~~~D~~G  106 (328)
T 1qlw_A           50 MYVRYQIPQR-------AKR-YPITLIHGCCLTGM--TWETTPDGRMGWDEYFLRKGYSTYVIDQSG  106 (328)
T ss_dssp             EEEEEEEETT-------CCS-SCEEEECCTTCCGG--GGSSCTTSCCCHHHHHHHTTCCEEEEECTT
T ss_pred             EEEEEEccCC-------CCC-ccEEEEeCCCCCCC--ccccCCCCchHHHHHHHHCCCeEEEECCCC
Confidence            5556667743       123 66899999975443  344       47789999999999999998

>3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}

Probab=95.30  E-value=0.029  Score=52.36  Aligned_cols=54  Identities=13%  Similarity=0.057  Sum_probs=40.1

Q ss_pred             eeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       466 ~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +... ||.+++....-+            -|.||++||++....  .|....+.|+ +||.|+.+|+||-
T Consensus         7 ~~~~-~g~~l~~~~~g~------------~~~vv~lHG~~~~~~--~~~~~~~~l~-~~~~vi~~d~~G~   60 (262)
T 3r0v_A            7 VPSS-DGTPIAFERSGS------------GPPVVLVGGALSTRA--GGAPLAERLA-PHFTVICYDRRGR   60 (262)
T ss_dssp             EECT-TSCEEEEEEEEC------------SSEEEEECCTTCCGG--GGHHHHHHHT-TTSEEEEECCTTS
T ss_pred             EEcC-CCcEEEEEEcCC------------CCcEEEECCCCcChH--HHHHHHHHHh-cCcEEEEEecCCC
Confidence            4555 898888555321            267999999987654  3566677787 9999999999984

>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*

Probab=95.30  E-value=0.014  Score=54.71  Aligned_cols=40  Identities=15%  Similarity=0.106  Sum_probs=33.2

Q ss_pred             CCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       494 ~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ..|.||++||.+.+..  .|....+.|+++||.|+.+|+||-
T Consensus        11 ~~~~vvllHG~~~~~~--~~~~~~~~l~~~g~~v~~~D~~G~   50 (267)
T 3sty_A           11 VKKHFVLVHAAFHGAW--CWYKIVALMRSSGHNVTALDLGAS   50 (267)
T ss_dssp             CCCEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEEECCTTS
T ss_pred             CCCeEEEECCCCCCcc--hHHHHHHHHHhcCCeEEEeccccC
Confidence            4589999999986543  466778899999999999999984

>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12

Probab=95.27  E-value=0.034  Score=52.64  Aligned_cols=55  Identities=15%  Similarity=0.155  Sum_probs=40.5

Q ss_pred             eeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       466 ~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +++. ||.+++...+-            .-|.||++||.+....  .|...++.|+.+||.|+.+|+||-
T Consensus         3 ~~~~-~g~~l~y~~~g------------~g~~vvllHG~~~~~~--~w~~~~~~l~~~g~~vi~~D~~G~   57 (274)
T 1a8q_A            3 CTTR-DGVEIFYKDWG------------QGRPVVFIHGWPLNGD--AWQDQLKAVVDAGYRGIAHDRRGH   57 (274)
T ss_dssp             EECT-TSCEEEEEEEC------------SSSEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEEECCTTS
T ss_pred             EEcc-CCCEEEEEecC------------CCceEEEECCCcchHH--HHHHHHHHHHhCCCeEEEEcCCCC
Confidence            4565 88887644331            1267999999986543  466677889999999999999983

>2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A*

Probab=95.25  E-value=0.011  Score=61.07  Aligned_cols=41  Identities=15%  Similarity=0.152  Sum_probs=30.7

Q ss_pred             CcEEEEEccCccccccCc-cChHH---HHHHhcCcEEEEeCCCCC
Q 008927          495 PPLLVKSHGGPTSEARGI-LNLSI---QYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       495 ~Pliv~iHGGP~~~~~~~-~~~~~---Q~~asrGyaVl~~NyRGS  535 (548)
                      -|.||++||.+....... |...+   +.|+++||.|+.+|.||+
T Consensus       109 ~p~vvllHG~~~~~~~~~~w~~~~~~~~~L~~~~~~Vi~~D~~G~  153 (444)
T 2vat_A          109 DNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGS  153 (444)
T ss_dssp             CCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTC
T ss_pred             CCeEEEECCCCcccchhhHHHHhcCccchhhccCCEEEEecCCCC
Confidence            488999999987765422 33333   257789999999999995

>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A

Probab=95.24  E-value=0.014  Score=53.96  Aligned_cols=43  Identities=14%  Similarity=0.109  Sum_probs=34.5

Q ss_pred             CCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCC
Q 008927          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGL  538 (548)
Q Consensus       494 ~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGy  538 (548)
                      ..|.||++||.+....  .|....+.|+++||.|+.+|+||...-
T Consensus        21 ~~~~vv~~HG~~~~~~--~~~~~~~~l~~~G~~v~~~d~~g~g~s   63 (251)
T 3dkr_A           21 TDTGVVLLHAYTGSPN--DMNFMARALQRSGYGVYVPLFSGHGTV   63 (251)
T ss_dssp             SSEEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEECCCTTCSSS
T ss_pred             CCceEEEeCCCCCCHH--HHHHHHHHHHHCCCEEEecCCCCCCCC
Confidence            4588899999876554  466778899999999999999986543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=95.24  E-value=0.51  Score=49.85  Aligned_cols=157  Identities=4%  Similarity=-0.068  Sum_probs=82.3

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeee--EECCCC-CEEEEEEecCCCC
Q 008927          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFP--RMDPRG-ERMAWIEWHHPNM  268 (548)
Q Consensus       192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p--~~SPDG-k~La~~~~~~~~~  268 (548)
                      .+..+.|+|++ .|+....+         ..|.++|+.++.. ....+......+...  .|+||| +.||=.+.     
T Consensus       268 ~v~sv~~s~~~-~lasgs~D---------gtV~lWD~~~~~~-~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~-----  331 (524)
T 2j04_B          268 LITTFDFLSPT-TVVCGFKN---------GFVAEFDLTDPEV-PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV-----  331 (524)
T ss_dssp             CEEEEEESSSS-EEEEEETT---------SEEEEEETTBCSS-CSEEEECSSSCEEEEEEECCTTSCCEEEEEET-----
T ss_pred             CEEEEEecCCC-eEEEEeCC---------CEEEEEECCCCCC-ceEEeecccccEEEEEEEcCCCCCeEEEEecc-----
Confidence            35567899875 55443322         3688889987641 022343333445544  579998 66653332     


Q ss_pred             CCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCee-Eeeccccccc
Q 008927          269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEF  347 (548)
Q Consensus       269 p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~-~~l~~~~~d~  347 (548)
                         ...|.+.|+.. ++.  ...+.+....  ..+....|+|||+.++.+.. ++  .+.++|+.++.. ..+...    
T Consensus       332 ---D~tvklWD~~~-~~~--~~~~~~~~~~--~~v~~v~fsp~~~~l~s~~~-d~--tv~lwd~~~~~~~~~l~gH----  396 (524)
T 2j04_B          332 ---DGYFYIFNPKD-IAT--TKTTVSRFRG--SNLVPVVYCPQIYSYIYSDG-AS--SLRAVPSRAAFAVHPLVSR----  396 (524)
T ss_dssp             ---TSEEEEECGGG-HHH--HCEEEEECSC--CSCCCEEEETTTTEEEEECS-SS--EEEEEETTCTTCCEEEEEC----
T ss_pred             ---CCeEEEEECCC-CCc--cccccccccc--CcccceEeCCCcCeEEEeCC-CC--cEEEEECcccccceeeecC----
Confidence               24678888863 331  1122221101  23567899999995444443 33  466677766553 333311    


Q ss_pred             CCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCC
Q 008927          348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG  390 (548)
Q Consensus       348 ~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~  390 (548)
                      ..+.     ...+|+|   ++..| ++...++.-.|  .|+..
T Consensus       397 ~~~V-----~sva~Sp---~g~~l-~Sgs~Dgtv~l--wd~~~  428 (524)
T 2j04_B          397 ETTI-----TAIGVSR---LHPMV-LAGSADGSLII--TNAAR  428 (524)
T ss_dssp             SSCE-----EEEECCS---SCCBC-EEEETTTEEEC--CBSCS
T ss_pred             CCce-----EEEEeCC---CCCeE-EEEECCCEEEE--EechH
Confidence            1111     2245554   55544 45666665544  45443

>3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina}

Probab=95.22  E-value=0.012  Score=58.76  Aligned_cols=51  Identities=22%  Similarity=0.226  Sum_probs=40.4

Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCC--------CCCCCCChhh
Q 008927          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY--------GGSTGLSSVP  542 (548)
Q Consensus       473 ~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~Ny--------RGStGyG~~f  542 (548)
                      ..++..||+|++.      .++.|+||-+|||             ++...+||+|+..|+        |||.|||.-|
T Consensus        90 ~~~~~~i~lP~~~------~~p~Pvii~i~~~-------------~~~~~~G~a~~~~~~~~v~~~~~~gs~g~g~f~  148 (375)
T 3pic_A           90 ISFTVTITYPSSG------TAPYPAIIGYGGG-------------SLPAPAGVAMINFNNDNIAAQVNTGSRGQGKFY  148 (375)
T ss_dssp             EEEEEEEECCSSS------CSSEEEEEEETTC-------------SSCCCTTCEEEEECHHHHSCCSSGGGTTCSHHH
T ss_pred             eEEEEEEECCCCC------CCCccEEEEECCC-------------ccccCCCeEEEEecccccccccCCCCccceecc
Confidence            3589999999641      3578999999995             122568999999998        9999999833

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.15  E-value=0.53  Score=49.15  Aligned_cols=120  Identities=10%  Similarity=0.035  Sum_probs=69.0

Q ss_pred             ceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC----ceeeeEE-------CCCCCEEEEEE
Q 008927          195 DGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD----FYAFPRM-------DPRGERMAWIE  262 (548)
Q Consensus       195 ~~~~Sp-DG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~----~~~~p~~-------SPDGk~La~~~  262 (548)
                      .+.++| ++..| |++++.       ...|++||++++.   ...|.....    .-...+|       ++||++|++..
T Consensus       143 ~la~dp~~~~~L-yv~~~~-------~~~i~~ID~~~~~---v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad  211 (496)
T 3kya_A          143 RLAFDPLNKDHL-YICYDG-------HKAIQLIDLKNRM---LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAI  211 (496)
T ss_dssp             EEEEETTEEEEE-EEEEET-------EEEEEEEETTTTE---EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEE
T ss_pred             EEEEccCCCCEE-EEEECC-------CCeEEEEECCCCE---EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEe
Confidence            467888 45555 444442       2579999999988   666653321    1345678       99999876544


Q ss_pred             ecCCCCCCCCceEEEEEecCCCceee---eEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEecc
Q 008927          263 WHHPNMPWDKAELWVGYISENGDVYK---RVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES  333 (548)
Q Consensus       263 ~~~~~~p~~~~~L~v~~~~~~g~~~~---~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~  333 (548)
                      +.. ...-....+++++.+.+|.+..   ...+...     .....+..+|++..+|+++...+  .||+++++
T Consensus       212 ~~~-~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-----~~p~giavdp~~g~LYvtd~~~g--~V~r~d~~  277 (496)
T 3kya_A          212 DYD-GKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-----KQCNGATIHPINGELYFNSYEKG--QVFRLDLV  277 (496)
T ss_dssp             CCC-TTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-----SCCCCEEECTTTCCEEEEETTTT--EEEEECHH
T ss_pred             CCC-CCcccCceEEEEecCCCCceeecccceeeccC-----CCceEEEEcCCCCeEEEEECCCC--EEEEEecc
Confidence            321 0000123577777665455421   1233321     23456678897663344444243  69999987

>4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A

Probab=95.14  E-value=0.012  Score=56.73  Aligned_cols=61  Identities=13%  Similarity=0.120  Sum_probs=35.8

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +|.....+.+.|-...|-- +| ..+.||++||-+.+.  ..|.+.++.|+++||.|+.+|+||-
T Consensus        29 ~~~~~~~~~~~p~~~p~~~-~G-~~~~VlllHG~~~s~--~~~~~la~~La~~Gy~Via~Dl~Gh   89 (281)
T 4fbl_A           29 SGMSTTPLQVLPGAEPLYS-VG-SRIGVLVSHGFTGSP--QSMRFLAEGFARAGYTVATPRLTGH   89 (281)
T ss_dssp             --------CCCTTCCCEEE-CC-SSEEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEECCCTTS
T ss_pred             CCccccceeecCCCccccc-CC-CCceEEEECCCCCCH--HHHHHHHHHHHHCCCEEEEECCCCC
Confidence            5666666666663211111 23 236689999954433  2466788999999999999999973

>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A

Probab=95.11  E-value=0.017  Score=54.61  Aligned_cols=40  Identities=10%  Similarity=0.083  Sum_probs=33.2

Q ss_pred             cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG  537 (548)
                      |+||++||.+....  .|....+.|+.+||.|+.+|+||...
T Consensus        41 ~~vv~~HG~~~~~~--~~~~~~~~l~~~G~~v~~~d~~G~G~   80 (270)
T 3rm3_A           41 VGVLLVHGFTGTPH--SMRPLAEAYAKAGYTVCLPRLKGHGT   80 (270)
T ss_dssp             EEEEEECCTTCCGG--GTHHHHHHHHHTTCEEEECCCTTCSS
T ss_pred             eEEEEECCCCCChh--HHHHHHHHHHHCCCEEEEeCCCCCCC
Confidence            99999999875543  36677889999999999999998543

>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*

Probab=95.09  E-value=0.051  Score=52.39  Aligned_cols=53  Identities=11%  Similarity=0.104  Sum_probs=39.8

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHH-HHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSI-QYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~-Q~~asrGyaVl~~NyRGS  535 (548)
                      ||.+++...+-|.          .-|.||++||.+....  .|.... ..|+++||.|+.+|+||-
T Consensus         9 ~g~~l~y~~~G~~----------~~~~vvllHG~~~~~~--~w~~~~~~~L~~~G~~vi~~D~rG~   62 (298)
T 1q0r_A            9 GDVELWSDDFGDP----------ADPALLLVMGGNLSAL--GWPDEFARRLADGGLHVIRYDHRDT   62 (298)
T ss_dssp             TTEEEEEEEESCT----------TSCEEEEECCTTCCGG--GSCHHHHHHHHTTTCEEEEECCTTS
T ss_pred             CCeEEEEEeccCC----------CCCeEEEEcCCCCCcc--chHHHHHHHHHhCCCEEEeeCCCCC
Confidence            8888887665431          1267999999986553  455544 789999999999999984

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.09  E-value=0.29  Score=48.78  Aligned_cols=29  Identities=21%  Similarity=0.184  Sum_probs=20.7

Q ss_pred             CCcCceECcCCcEEEEEeCCCCeeeEEEEec
Q 008927          302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIE  332 (548)
Q Consensus       302 ~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~  332 (548)
                      ....+.+.|||.||+++|.  ....||++..
T Consensus       324 rp~~v~~~pdG~lyv~td~--~~g~I~ri~~  352 (353)
T 2g8s_A          324 RIRDVRTGPDGYLYVLTDE--SSGELLKVSP  352 (353)
T ss_dssp             CEEEEEECTTSCEEEEECS--TTEEEEEEEC
T ss_pred             ceeEEEECCCCcEEEEEeC--CCCEEEEEeC
Confidence            4556788999998888774  2246887753

>4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A

Probab=95.08  E-value=0.026  Score=53.03  Aligned_cols=40  Identities=20%  Similarity=0.331  Sum_probs=31.7

Q ss_pred             CcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       495 ~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      .|.||++||.+....  .|....+.+.++||.|+.+|+||..
T Consensus        24 ~~~vv~lHG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~G~G   63 (279)
T 4g9e_A           24 GAPLLMIHGNSSSGA--IFAPQLEGEIGKKWRVIAPDLPGHG   63 (279)
T ss_dssp             EEEEEEECCTTCCGG--GGHHHHHSHHHHHEEEEEECCTTST
T ss_pred             CCeEEEECCCCCchh--HHHHHHhHHHhcCCeEEeecCCCCC
Confidence            378999999986543  3556667778899999999999854

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=94.97  E-value=0.09  Score=55.71  Aligned_cols=143  Identities=10%  Similarity=-0.057  Sum_probs=80.5

Q ss_pred             EEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCceecce--eeCCCC-CEEEEEEeccCCCCCCceeEEEEEECCCCC
Q 008927          157 VIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADG--IFDPRF-NRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (548)
Q Consensus       157 i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~--~~SpDG-~~i~~v~~~~~~~~~~~~~~l~~idl~~g~  232 (548)
                      .+.+...++.|.+.|+..+ ..+. .+....    ..+.+.  .|+|+| +.|+..+.|         ..|.++|+.+++
T Consensus       279 ~lasgs~DgtV~lWD~~~~-~~~~~~~~~H~----~~V~sv~~~~s~~g~~~laS~S~D---------~tvklWD~~~~~  344 (524)
T 2j04_B          279 TVVCGFKNGFVAEFDLTDP-EVPSFYDQVHD----SYILSVSTAYSDFEDTVVSTVAVD---------GYFYIFNPKDIA  344 (524)
T ss_dssp             EEEEEETTSEEEEEETTBC-SSCSEEEECSS----SCEEEEEEECCTTSCCEEEEEETT---------SEEEEECGGGHH
T ss_pred             eEEEEeCCCEEEEEECCCC-CCceEEeeccc----ccEEEEEEEcCCCCCeEEEEeccC---------CeEEEEECCCCC
Confidence            3445556788888888751 2332 233221    224444  578998 655544333         367888988765


Q ss_pred             ccCcEEeeec-C-CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc
Q 008927          233 IQEPKVLVSG-S-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS  310 (548)
Q Consensus       233 ~~~~~~L~~~-~-~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp  310 (548)
                      .  ...+... . ......+|||||+.|+-..        ....+.+.|+.. +.  ....+.+..    ..+....|+|
T Consensus       345 ~--~~~~~~~~~~~~v~~v~fsp~~~~l~s~~--------~d~tv~lwd~~~-~~--~~~~l~gH~----~~V~sva~Sp  407 (524)
T 2j04_B          345 T--TKTTVSRFRGSNLVPVVYCPQIYSYIYSD--------GASSLRAVPSRA-AF--AVHPLVSRE----TTITAIGVSR  407 (524)
T ss_dssp             H--HCEEEEECSCCSCCCEEEETTTTEEEEEC--------SSSEEEEEETTC-TT--CCEEEEECS----SCEEEEECCS
T ss_pred             c--ccccccccccCcccceEeCCCcCeEEEeC--------CCCcEEEEECcc-cc--cceeeecCC----CceEEEEeCC
Confidence            1  2233221 1 1234568999999876322        123588888874 43  123344433    4678899999


Q ss_pred             CCcEEEEEeCCCCeeeEEEEecc
Q 008927          311 KGELFFVTDRKNGFWNLHKWIES  333 (548)
Q Consensus       311 DG~L~~~sd~~~g~~~Ly~~d~~  333 (548)
                      ||++++.... +|.  +.++++.
T Consensus       408 ~g~~l~Sgs~-Dgt--v~lwd~~  427 (524)
T 2j04_B          408 LHPMVLAGSA-DGS--LIITNAA  427 (524)
T ss_dssp             SCCBCEEEET-TTE--EECCBSC
T ss_pred             CCCeEEEEEC-CCE--EEEEech
Confidence            9995444433 443  4445553

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.92  E-value=1.3  Score=42.66  Aligned_cols=239  Identities=11%  Similarity=-0.073  Sum_probs=117.8

Q ss_pred             CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEecc-CCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDR-RQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (548)
Q Consensus       165 ~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~-~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~  243 (548)
                      ..++++++..  .+-+.+...+   ..|...-...-++ .|+.+-... ........++++++|+.+.+   -+.+...+
T Consensus        39 ~~~~~~d~~~--~~W~~~~~~p---~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~---W~~~~~~p  109 (308)
T 1zgk_A           39 SYLEAYNPSN--GTWLRLADLQ---VPRSGLAGCVVGG-LLYAVGGRNNSPDGNTDSSALDCYNPMTNQ---WSPCAPMS  109 (308)
T ss_dssp             CCEEEEETTT--TEEEECCCCS---SCCBSCEEEEETT-EEEEECCEEEETTEEEECCCEEEEETTTTE---EEECCCCS
T ss_pred             ceEEEEcCCC--CeEeECCCCC---cccccceEEEECC-EEEEECCCcCCCCCCeecceEEEECCCCCe---EeECCCCC
Confidence            4688888876  5566665442   1222211122244 443331110 00001134679999999887   45554322


Q ss_pred             C---ceeeeEECCCCCEEEEEE-ecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEe
Q 008927          244 D---FYAFPRMDPRGERMAWIE-WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD  319 (548)
Q Consensus       244 ~---~~~~p~~SPDGk~La~~~-~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd  319 (548)
                      .   ......+  +|+ |..+. .+...   ....++++|... .++   ..+...+ .  .........-+++||++.-
T Consensus       110 ~~r~~~~~~~~--~~~-iyv~GG~~~~~---~~~~~~~yd~~~-~~W---~~~~~~p-~--~r~~~~~~~~~~~iyv~GG  176 (308)
T 1zgk_A          110 VPRNRIGVGVI--DGH-IYAVGGSHGCI---HHNSVERYEPER-DEW---HLVAPML-T--RRIGVGVAVLNRLLYAVGG  176 (308)
T ss_dssp             SCCBTCEEEEE--TTE-EEEECCEETTE---ECCCEEEEETTT-TEE---EECCCCS-S--CCBSCEEEEETTEEEEECC
T ss_pred             cCccccEEEEE--CCE-EEEEcCCCCCc---ccccEEEECCCC-CeE---eECCCCC-c--cccceEEEEECCEEEEEeC
Confidence            1   1222222  554 43332 11110   135688999874 443   2232221 0  1111112223667777742


Q ss_pred             C--CCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC---eEEEEEEECCCCceE
Q 008927          320 R--KNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---RSYLGILDDFGHSLS  394 (548)
Q Consensus       320 ~--~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g---~~~L~~~dl~~g~~~  394 (548)
                      .  ......++.+|+.+++.+.+.+..    .+...   .....     -++.||+..-.++   ...++++|+++++++
T Consensus       177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p----~~r~~---~~~~~-----~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  244 (308)
T 1zgk_A          177 FDGTNRLNSAECYYPERNEWRMITAMN----TIRSG---AGVCV-----LHNCIYAAGGYDGQDQLNSVERYDVETETWT  244 (308)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEECCCCS----SCCBS---CEEEE-----ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CCCCCcCceEEEEeCCCCeEeeCCCCC----Ccccc---ceEEE-----ECCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence            2  112456999999888887764321    11111   11122     2455655422111   357899999999998


Q ss_pred             eecC-CCcee-EeeeecCCEEEEEEecC--CCCCeEEEEEcCCCcee
Q 008927          395 LLDI-PFTDI-DNITLGNDCLFVEGASG--VEPSSVAKVTLDDHKLK  437 (548)
Q Consensus       395 ~l~~-~~~~~-~~~s~d~~~l~~~~ss~--~~p~~l~~~d~~~~~~~  437 (548)
                      .+.. +.... ..+..-++.|++++...  ....+++++|+++.+.+
T Consensus       245 ~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          245 FVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             ECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             ECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence            8763 22111 11223356677766432  23468999999887754

>4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A*

Probab=94.82  E-value=0.031  Score=56.52  Aligned_cols=58  Identities=17%  Similarity=0.167  Sum_probs=43.2

Q ss_pred             EEeeccCCCeE--EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCC--------C
Q 008927          464 IEFPTEVPGQK--AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY--------G  533 (548)
Q Consensus       464 i~~~s~~dG~~--i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~Ny--------R  533 (548)
                      |+++.  .|..  +.+.||+|++       .++.|+||.+||+ .      +      ...+||+|+..|+        |
T Consensus       114 I~v~~--~g~s~sf~~~i~lP~g-------~~P~Pvii~~~~~-~------~------~~~~G~A~i~f~~~~va~d~~~  171 (433)
T 4g4g_A          114 VRVTV--GSKSISFSASIRKPSG-------AGPFPAIIGIGGA-S------I------PIPSNVATITFNNDEFGAQMGS  171 (433)
T ss_dssp             EEEEE--TTEEEEEEEEEECCSS-------SCCEEEEEEESCC-C------S------CCCTTSEEEEECHHHHSCCSSG
T ss_pred             EEEEc--CCeeEEEEEEEECCCC-------CCCccEEEEECCC-c------c------ccCCCeEEEEeCCcccccccCC
Confidence            44443  4543  6999999964       3578999999985 1      1      1568999999998        8


Q ss_pred             CCCCCChhhhh
Q 008927          534 GSTGLSSVPST  544 (548)
Q Consensus       534 GStGyG~~f~~  544 (548)
                      ||.|||+ |.+
T Consensus       172 gsrG~g~-f~~  181 (433)
T 4g4g_A          172 GSRGQGK-FYD  181 (433)
T ss_dssp             GGTTCSH-HHH
T ss_pred             CcCCccc-ccc
Confidence            8999998 543

>1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A

Probab=94.75  E-value=0.048  Score=52.20  Aligned_cols=54  Identities=24%  Similarity=0.271  Sum_probs=35.9

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +|.+++...+-+         +.+.|.||++||+|.+...  |......++.+||.|+.+|+||.
T Consensus        13 ~g~~l~~~~~g~---------~~~~~~vvllHG~~~~~~~--~~~~~~~l~~~g~~vi~~D~~G~   66 (293)
T 1mtz_A           13 NGIYIYYKLCKA---------PEEKAKLMTMHGGPGMSHD--YLLSLRDMTKEGITVLFYDQFGC   66 (293)
T ss_dssp             TTEEEEEEEECC---------SSCSEEEEEECCTTTCCSG--GGGGGGGGGGGTEEEEEECCTTS
T ss_pred             CCEEEEEEEECC---------CCCCCeEEEEeCCCCcchh--HHHHHHHHHhcCcEEEEecCCCC
Confidence            787776655433         1123678999999865432  22223445788999999999984

>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10

Probab=94.68  E-value=0.048  Score=52.08  Aligned_cols=54  Identities=19%  Similarity=0.134  Sum_probs=37.8

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccC-ccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGG-PTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGG-P~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +|..++-...-+          +..|+||++||. |.+.....|...+..|+.+ |.|+.+|+||-
T Consensus        15 ~g~~l~y~~~g~----------~g~p~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~D~~G~   69 (285)
T 1c4x_A           15 GTLASHALVAGD----------PQSPAVVLLHGAGPGAHAASNWRPIIPDLAEN-FFVVAPDLIGF   69 (285)
T ss_dssp             TTSCEEEEEESC----------TTSCEEEEECCCSTTCCHHHHHGGGHHHHHTT-SEEEEECCTTS
T ss_pred             CCEEEEEEecCC----------CCCCEEEEEeCCCCCCcchhhHHHHHHHHhhC-cEEEEecCCCC
Confidence            777777544321          234889999995 6544444566667778765 99999999973

>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*

Probab=94.64  E-value=0.034  Score=52.81  Aligned_cols=39  Identities=21%  Similarity=0.175  Sum_probs=32.5

Q ss_pred             CcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       495 ~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      -|.||++||.+.+..  .|...+..|+++||.|+.+|.||-
T Consensus        10 g~~vvllHG~~~~~~--~w~~~~~~L~~~g~~via~Dl~G~   48 (264)
T 2wfl_A           10 QKHFVLVHGGCLGAW--IWYKLKPLLESAGHKVTAVDLSAA   48 (264)
T ss_dssp             CCEEEEECCTTCCGG--GGTTHHHHHHHTTCEEEEECCTTS
T ss_pred             CCeEEEECCCccccc--hHHHHHHHHHhCCCEEEEeecCCC
Confidence            377999999986543  467778899999999999999994

>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A*

Probab=94.61  E-value=0.019  Score=61.56  Aligned_cols=59  Identities=22%  Similarity=0.299  Sum_probs=36.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccccc-CccChHHHHHHhc-CcEEEEeCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTSR-GWAFVDVNYGG  534 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~-~~~~~~~Q~~asr-GyaVl~~NyRG  534 (548)
                      |..  +..+|.|.+.... ..++++|+||+||||....-. ..++.  ..|+++ |++|+.+|||-
T Consensus       110 dcL--~l~v~~P~~~~~~-~~~~~~Pv~v~iHGGg~~~g~~~~~~~--~~la~~~~~vvv~~~YRl  170 (574)
T 3bix_A          110 DCL--YLNIYVPTEDDIR-DSGGPKPVMVYIHGGSYMEGTGNLYDG--SVLASYGNVIVITVNYRL  170 (574)
T ss_dssp             CCC--EEEEEEEC---------CCEEEEEECCCSSSSSCCGGGSCC--HHHHHHHTCEEEEECCCC
T ss_pred             cCC--EEEEEECCCCCcC-CCCCCCcEEEEECCCcccCCCCCccCc--hhhhccCCEEEEEeCCcC
Confidence            654  4567778642110 013568999999999764422 22333  567776 69999999993

>3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A*

Probab=94.55  E-value=0.023  Score=52.26  Aligned_cols=41  Identities=7%  Similarity=-0.027  Sum_probs=33.3

Q ss_pred             CCCCcEEEEEccCccccccCccChHHHHHHh--cCcEEEEeCCCC
Q 008927          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTS--RGWAFVDVNYGG  534 (548)
Q Consensus       492 ~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~as--rGyaVl~~NyRG  534 (548)
                      +++.|+||++||++....  .|....+.|++  +||.|+.+|++|
T Consensus        21 ~~~~~~vv~lHG~~~~~~--~~~~~~~~l~~~~~g~~v~~~d~p~   63 (226)
T 3cn9_A           21 PNADACIIWLHGLGADRT--DFKPVAEALQMVLPSTRFILPQAPS   63 (226)
T ss_dssp             TTCCEEEEEECCTTCCGG--GGHHHHHHHHHHCTTEEEEECCCCE
T ss_pred             CCCCCEEEEEecCCCChH--HHHHHHHHHhhcCCCcEEEeecCCC
Confidence            457799999999985443  46667788888  999999999885

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.54  E-value=3.4  Score=39.47  Aligned_cols=241  Identities=7%  Similarity=-0.087  Sum_probs=121.8

Q ss_pred             CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~  243 (548)
                      ...+|++|+..  .+-+.+.+..   ..|...-...-+++ |+.+ ....   ....++++++|+.+++   -+.+...+
T Consensus        23 ~~~~~~~d~~~--~~W~~~~~~p---~~r~~~~~~~~~~~-lyv~-GG~~---~~~~~~~~~~d~~~~~---W~~~~~~p   89 (306)
T 3ii7_A           23 PQSCRYFNPKD--YSWTDIRCPF---EKRRDAACVFWDNV-VYIL-GGSQ---LFPIKRMDCYNVVKDS---WYSKLGPP   89 (306)
T ss_dssp             TTSEEEEETTT--TEEEECCCCS---CCCBSCEEEEETTE-EEEE-CCBS---SSBCCEEEEEETTTTE---EEEEECCS
T ss_pred             CceEEEecCCC--CCEecCCCCC---cccceeEEEEECCE-EEEE-eCCC---CCCcceEEEEeCCCCe---EEECCCCC
Confidence            35789999876  5556665542   12222212222444 4333 2211   1245789999999987   55554322


Q ss_pred             Cc-eeeeEECCCCCEEEEEE-ecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEE--e
Q 008927          244 DF-YAFPRMDPRGERMAWIE-WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT--D  319 (548)
Q Consensus       244 ~~-~~~p~~SPDGk~La~~~-~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~s--d  319 (548)
                      .. .......-+++ |..+. .+...  -....++++|... .++   ..+...+ .  .......-.-+++||++.  +
T Consensus        90 ~~r~~~~~~~~~~~-iyv~GG~~~~~--~~~~~~~~~d~~~-~~W---~~~~~~p-~--~r~~~~~~~~~~~iyv~GG~~  159 (306)
T 3ii7_A           90 TPRDSLAACAAEGK-IYTSGGSEVGN--SALYLFECYDTRT-ESW---HTKPSML-T--QRCSHGMVEANGLIYVCGGSL  159 (306)
T ss_dssp             SCCBSCEEEEETTE-EEEECCBBTTB--SCCCCEEEEETTT-TEE---EEECCCS-S--CCBSCEEEEETTEEEEECCEE
T ss_pred             ccccceeEEEECCE-EEEECCCCCCC--cEeeeEEEEeCCC-Cce---EeCCCCc-C--CcceeEEEEECCEEEEECCCC
Confidence            11 11111222454 43332 22111  0235799999874 443   3333222 1  111111223467777773  2


Q ss_pred             CCCC----eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEE-eC--CeEEEEEEECCCCc
Q 008927          320 RKNG----FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QN--GRSYLGILDDFGHS  392 (548)
Q Consensus       320 ~~~g----~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~-~~--g~~~L~~~dl~~g~  392 (548)
                      ....    ...++++|+++++.+.+.+..    .+...   .....     -++.||+.-- ..  ....++++|+++++
T Consensus       160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p----~~r~~---~~~~~-----~~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          160 GNNVSGRVLNSCEVYDPATETWTELCPMI----EARKN---HGLVF-----VKDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             SCTTTCEECCCEEEEETTTTEEEEECCCS----SCCBS---CEEEE-----ETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             CCCCcccccceEEEeCCCCCeEEECCCcc----chhhc---ceEEE-----ECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence            2122    457999999999888775321    11110   11122     2445554421 11  13468999999999


Q ss_pred             eEeecC-CCcee-EeeeecCCEEEEEEecC--CCCCeEEEEEcCCCceeee
Q 008927          393 LSLLDI-PFTDI-DNITLGNDCLFVEGASG--VEPSSVAKVTLDDHKLKAV  439 (548)
Q Consensus       393 ~~~l~~-~~~~~-~~~s~d~~~l~~~~ss~--~~p~~l~~~d~~~~~~~~~  439 (548)
                      ++.+.. +.... .....-++.|++++...  ....+++++|+++.+.+.+
T Consensus       228 W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~  278 (306)
T 3ii7_A          228 WKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVAN  278 (306)
T ss_dssp             EEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred             EEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence            988753 22111 11123356677766432  2456899999988876543

>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus}

Probab=94.48  E-value=0.044  Score=52.65  Aligned_cols=59  Identities=25%  Similarity=0.375  Sum_probs=41.5

Q ss_pred             EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCC
Q 008927          463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       463 ~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      ...+... +|.+++...+-|.          .-|.||++||.+..... .|...++.| ++||.|+.+|.||
T Consensus         4 ~~~~~~~-~g~~l~~~~~G~~----------~~~~vvllHG~~~~~~~-~w~~~~~~L-~~~~~vi~~Dl~G   62 (286)
T 2yys_A            4 EIGYVPV-GEAELYVEDVGPV----------EGPALFVLHGGPGGNAY-VLREGLQDY-LEGFRVVYFDQRG   62 (286)
T ss_dssp             EEEEEEC-SSCEEEEEEESCT----------TSCEEEEECCTTTCCSH-HHHHHHGGG-CTTSEEEEECCTT
T ss_pred             ceeEEeE-CCEEEEEEeecCC----------CCCEEEEECCCCCcchh-HHHHHHHHh-cCCCEEEEECCCC
Confidence            3445555 8888887776541          12679999999865531 345555667 5699999999999

>2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2}

Probab=94.43  E-value=0.03  Score=55.47  Aligned_cols=40  Identities=15%  Similarity=0.189  Sum_probs=32.2

Q ss_pred             CcEEEEEccCcccccc---CccC-----------hHHHHHHhcCcEEEEeCCCC
Q 008927          495 PPLLVKSHGGPTSEAR---GILN-----------LSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       495 ~Pliv~iHGGP~~~~~---~~~~-----------~~~Q~~asrGyaVl~~NyRG  534 (548)
                      .|.||++||++.+...   ..|.           ...+.|+.+||.|+.+|+||
T Consensus        50 ~~~vv~~hG~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G  103 (354)
T 2rau_A           50 NDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRT  103 (354)
T ss_dssp             EEEEEEECCTTCCHHHHHHSEETTEECSCCCGGGCHHHHHHHTTEEEEEEECGG
T ss_pred             CCEEEEECCCCCCccccccccccccccccccchhhHHHHHHhCCCEEEEecCCC
Confidence            3889999999876542   1343           66789999999999999998

>3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A

Probab=94.40  E-value=0.065  Score=50.91  Aligned_cols=52  Identities=17%  Similarity=0.137  Sum_probs=38.8

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ||.+++...+-+.          ..|.||++||++....  .|......|+ +||.|+.+|+||-
T Consensus        18 ~g~~l~~~~~g~~----------~~~~vl~lHG~~~~~~--~~~~~~~~l~-~~~~v~~~d~~G~   69 (299)
T 3g9x_A           18 LGERMHYVDVGPR----------DGTPVLFLHGNPTSSY--LWRNIIPHVA-PSHRCIAPDLIGM   69 (299)
T ss_dssp             TTEEEEEEEESCS----------SSCCEEEECCTTCCGG--GGTTTHHHHT-TTSCEEEECCTTS
T ss_pred             CCeEEEEEecCCC----------CCCEEEEECCCCccHH--HHHHHHHHHc-cCCEEEeeCCCCC
Confidence            7888887666441          1367999999987654  4556667774 6999999999984

>2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A*

Probab=94.34  E-value=0.1  Score=50.92  Aligned_cols=51  Identities=22%  Similarity=0.218  Sum_probs=38.8

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +|.+++-...-           + -|.||++||.|....  .|...+..|+++||.|+.+|.||-
T Consensus        19 ~g~~l~y~~~G-----------~-g~~vvllHG~~~~~~--~w~~~~~~L~~~g~~via~Dl~G~   69 (328)
T 2cjp_A           19 NGLNMHLAELG-----------E-GPTILFIHGFPELWY--SWRHQMVYLAERGYRAVAPDLRGY   69 (328)
T ss_dssp             TTEEEEEEEEC-----------S-SSEEEEECCTTCCGG--GGHHHHHHHHTTTCEEEEECCTTS
T ss_pred             CCcEEEEEEcC-----------C-CCEEEEECCCCCchH--HHHHHHHHHHHCCcEEEEECCCCC
Confidence            78887755431           1 278999999987543  456667889999999999999983

>1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A*

Probab=94.33  E-value=0.036  Score=50.33  Aligned_cols=41  Identities=10%  Similarity=-0.113  Sum_probs=32.4

Q ss_pred             CCCCcEEEEEccCccccccCccChHHHHHHh--cCcEEEEeCCCC
Q 008927          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTS--RGWAFVDVNYGG  534 (548)
Q Consensus       492 ~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~as--rGyaVl~~NyRG  534 (548)
                      +++.|+||++||+....  ..|....+.|++  +||.|+.+|.+|
T Consensus        11 ~~~~~~vv~~HG~~~~~--~~~~~~~~~l~~~~~g~~v~~~d~p~   53 (218)
T 1auo_A           11 KPADACVIWLHGLGADR--YDFMPVAEALQESLLTTRFVLPQAPT   53 (218)
T ss_dssp             SCCSEEEEEECCTTCCT--TTTHHHHHHHHTTCTTEEEEECCCCE
T ss_pred             CCCCcEEEEEecCCCCh--hhHHHHHHHHhhcCCceEEEeCCCCC
Confidence            35679999999987443  346667788998  999999999764

>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14

Probab=94.28  E-value=0.018  Score=52.86  Aligned_cols=54  Identities=13%  Similarity=-0.042  Sum_probs=38.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ++.+++.+++.|.+        ...|+||++||+.....  .|....+.|+. ||.|+.+|.+|.
T Consensus        14 ~~~~l~~~~~~~~~--------~~~p~vv~lHG~g~~~~--~~~~~~~~l~~-~~~vv~~d~~~~   67 (223)
T 3b5e_A           14 TDLAFPYRLLGAGK--------ESRECLFLLHGSGVDET--TLVPLARRIAP-TATLVAARGRIP   67 (223)
T ss_dssp             CSSSSCEEEESTTS--------SCCCEEEEECCTTBCTT--TTHHHHHHHCT-TSEEEEECCSEE
T ss_pred             cCCCceEEEeCCCC--------CCCCEEEEEecCCCCHH--HHHHHHHhcCC-CceEEEeCCCCC
Confidence            45667777777742        12399999999875433  45556667765 999999998774

>3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified}

Probab=94.25  E-value=0.09  Score=50.11  Aligned_cols=51  Identities=22%  Similarity=0.195  Sum_probs=38.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +|.+++-...-+            -|.||++||.+....  .|......|.++||.|+.+|+||-
T Consensus        17 ~g~~l~~~~~g~------------~~~vv~~HG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~G~   67 (309)
T 3u1t_A           17 EGATIAYVDEGS------------GQPVLFLHGNPTSSY--LWRNIIPYVVAAGYRAVAPDLIGM   67 (309)
T ss_dssp             TTEEEEEEEEEC------------SSEEEEECCTTCCGG--GGTTTHHHHHHTTCEEEEECCTTS
T ss_pred             CCeEEEEEEcCC------------CCEEEEECCCcchhh--hHHHHHHHHHhCCCEEEEEccCCC
Confidence            788876544321            378999999986544  466777888999999999999973

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=94.17  E-value=7.7  Score=42.04  Aligned_cols=52  Identities=12%  Similarity=0.150  Sum_probs=32.6

Q ss_pred             EEEEEEECCCCceE-eecCCCcee-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          381 SYLGILDDFGHSLS-LLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       381 ~~L~~~dl~~g~~~-~l~~~~~~~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      ..|+.+|+.+|++. +...+.... ..+...++.++ +++   ....|+.+|.++++.
T Consensus       438 g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf-~g~---~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVF-QGT---AAGQMHAYSADKGEA  491 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEE-EEC---TTSEEEEEETTTCCE
T ss_pred             ceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEE-EEC---CcccchhhhhhcChh
Confidence            67999999999764 333222222 23345666554 442   357899999988874

>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A

Probab=94.15  E-value=0.037  Score=52.69  Aligned_cols=37  Identities=19%  Similarity=0.171  Sum_probs=30.8

Q ss_pred             EEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       497 liv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      .||++||.+....  .|...++.|+.+||.|+.+|+||-
T Consensus        25 pvvllHG~~~~~~--~~~~~~~~L~~~g~~vi~~D~~G~   61 (277)
T 1brt_A           25 PVVLIHGFPLSGH--SWERQSAALLDAGYRVITYDRRGF   61 (277)
T ss_dssp             EEEEECCTTCCGG--GGHHHHHHHHHTTCEEEEECCTTS
T ss_pred             eEEEECCCCCcHH--HHHHHHHHHhhCCCEEEEeCCCCC
Confidence            3889999986543  466778899999999999999984

>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0

Probab=94.13  E-value=0.038  Score=52.80  Aligned_cols=38  Identities=18%  Similarity=0.245  Sum_probs=31.3

Q ss_pred             cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      |.||++||.|....  .|...+..|+++||.|+.+|+||-
T Consensus        28 ~~vvllHG~~~~~~--~w~~~~~~l~~~g~~vi~~D~~G~   65 (281)
T 3fob_A           28 KPVVLIHGWPLSGR--SWEYQVPALVEAGYRVITYDRRGF   65 (281)
T ss_dssp             EEEEEECCTTCCGG--GGTTTHHHHHHTTEEEEEECCTTS
T ss_pred             CeEEEECCCCCcHH--HHHHHHHHHHhCCCEEEEeCCCCC
Confidence            45788999987654  466677889999999999999984

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.01  E-value=4.3  Score=38.62  Aligned_cols=235  Identities=12%  Similarity=0.008  Sum_probs=116.7

Q ss_pred             eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC-
Q 008927          166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD-  244 (548)
Q Consensus       166 ~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~-  244 (548)
                      .++.+++..  .+-+.+...+   ..+...-...-++ .|+.+ ....  .....++++++|+.+.+   -+.+...+. 
T Consensus        31 ~~~~~d~~~--~~W~~~~~~p---~~r~~~~~~~~~~-~lyv~-GG~~--~~~~~~~~~~~d~~~~~---W~~~~~~p~~   98 (302)
T 2xn4_A           31 SVECYDFKE--ERWHQVAELP---SRRCRAGMVYMAG-LVFAV-GGFN--GSLRVRTVDSYDPVKDQ---WTSVANMRDR   98 (302)
T ss_dssp             CEEEEETTT--TEEEEECCCS---SCCBSCEEEEETT-EEEEE-SCBC--SSSBCCCEEEEETTTTE---EEEECCCSSC
T ss_pred             cEEEEcCcC--CcEeEcccCC---cccccceEEEECC-EEEEE-eCcC--CCccccceEEECCCCCc---eeeCCCCCcc
Confidence            578888775  4455554432   1222211122243 44443 2211  11234689999999887   555543221 


Q ss_pred             --ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEE--eC
Q 008927          245 --FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT--DR  320 (548)
Q Consensus       245 --~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~s--d~  320 (548)
                        ......+  +++-+++-..+...   ....++++|+.. .++   ..+...+..  .... ..-.-+++||++.  +.
T Consensus        99 r~~~~~~~~--~~~iyv~GG~~~~~---~~~~~~~~d~~~-~~W---~~~~~~p~~--r~~~-~~~~~~~~iyv~GG~~~  166 (302)
T 2xn4_A           99 RSTLGAAVL--NGLLYAVGGFDGST---GLSSVEAYNIKS-NEW---FHVAPMNTR--RSSV-GVGVVGGLLYAVGGYDV  166 (302)
T ss_dssp             CBSCEEEEE--TTEEEEEEEECSSC---EEEEEEEEETTT-TEE---EEECCCSSC--CBSC-EEEEETTEEEEECCEET
T ss_pred             ccceEEEEE--CCEEEEEcCCCCCc---cCceEEEEeCCC-CeE---eecCCCCCc--ccCc-eEEEECCEEEEEeCCCC
Confidence              1222222  45433322222111   135789999874 443   333322201  1111 1222467777773  22


Q ss_pred             CCC--eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC---eEEEEEEECCCCceEe
Q 008927          321 KNG--FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---RSYLGILDDFGHSLSL  395 (548)
Q Consensus       321 ~~g--~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g---~~~L~~~dl~~g~~~~  395 (548)
                      ...  ...++.+|+++++.+.+.+..    .+...   .....     -++.||+..-.++   ...++++|+++++++.
T Consensus       167 ~~~~~~~~~~~yd~~~~~W~~~~~~p----~~r~~---~~~~~-----~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  234 (302)
T 2xn4_A          167 ASRQCLSTVECYNATTNEWTYIAEMS----TRRSG---AGVGV-----LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ  234 (302)
T ss_dssp             TTTEECCCEEEEETTTTEEEEECCCS----SCCBS---CEEEE-----ETTEEEEECCBSSSSBCCCEEEEETTTTEEEE
T ss_pred             CCCccccEEEEEeCCCCcEEECCCCc----ccccc---ccEEE-----ECCEEEEECCCCCCcccceEEEEeCCCCCEee
Confidence            111  356999999998888775321    11110   11122     2455655432211   3479999999999988


Q ss_pred             ecC-CCcee-EeeeecCCEEEEEEecCC--CCCeEEEEEcCCCce
Q 008927          396 LDI-PFTDI-DNITLGNDCLFVEGASGV--EPSSVAKVTLDDHKL  436 (548)
Q Consensus       396 l~~-~~~~~-~~~s~d~~~l~~~~ss~~--~p~~l~~~d~~~~~~  436 (548)
                      +.. +.... ..+..-++.|++++....  ...+++++|+++.+.
T Consensus       235 ~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          235 VADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence            763 22111 112234566777664322  246789999987764

>2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40

Probab=93.99  E-value=0.043  Score=54.35  Aligned_cols=57  Identities=11%  Similarity=0.022  Sum_probs=37.4

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccC-----------ccChHH---HHHHhcCcEEEEeCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-----------ILNLSI---QYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~-----------~~~~~~---Q~~asrGyaVl~~NyRG  534 (548)
                      ||..++-..+-+.+       .++.|.||++||.+......           .|...+   +.|+++||.|+.+|+||
T Consensus        29 ~g~~l~y~~~g~~~-------~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~vi~~D~~G   99 (366)
T 2pl5_A           29 SPVVIAYETYGTLS-------SSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIG   99 (366)
T ss_dssp             SSEEEEEEEEECCC-------TTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTT
T ss_pred             cCceeeEEeccCcC-------CCCCceEEEecccCCcccccccccccccccchHHhhcCCcccccccccEEEEecCCC
Confidence            45556555554421       12348899999998766521           344433   24678999999999999

>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A*

Probab=93.97  E-value=0.034  Score=52.86  Aligned_cols=37  Identities=16%  Similarity=0.213  Sum_probs=30.6

Q ss_pred             EEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       497 liv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      .||++||.+....  .|...++.|+.+||.|+.+|+||-
T Consensus        25 pvvllHG~~~~~~--~~~~~~~~L~~~g~~vi~~D~~G~   61 (279)
T 1hkh_A           25 PVVLIHGYPLDGH--SWERQTRELLAQGYRVITYDRRGF   61 (279)
T ss_dssp             EEEEECCTTCCGG--GGHHHHHHHHHTTEEEEEECCTTS
T ss_pred             cEEEEcCCCchhh--HHhhhHHHHHhCCcEEEEeCCCCC
Confidence            3899999886543  466777899999999999999984

>1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A

Probab=93.97  E-value=0.11  Score=50.72  Aligned_cols=52  Identities=17%  Similarity=0.179  Sum_probs=39.4

Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       473 ~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      .+++..-.-|.         ..-|.||++||.|....  .|...+..|+.+||-|+.+|.||-
T Consensus        34 ~~l~y~~~G~~---------~~g~~vvllHG~~~~~~--~w~~~~~~L~~~g~rvia~Dl~G~   85 (310)
T 1b6g_A           34 LRAHYLDEGNS---------DAEDVFLCLHGEPTWSY--LYRKMIPVFAESGARVIAPDFFGF   85 (310)
T ss_dssp             CEEEEEEEECT---------TCSCEEEECCCTTCCGG--GGTTTHHHHHHTTCEEEEECCTTS
T ss_pred             eEEEEEEeCCC---------CCCCEEEEECCCCCchh--hHHHHHHHHHhCCCeEEEeCCCCC
Confidence            78876665441         10267999999987554  566778899999999999999983

>4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp}

Probab=93.93  E-value=0.11  Score=52.85  Aligned_cols=54  Identities=17%  Similarity=0.118  Sum_probs=42.6

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhc---------CcEEEEeCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR---------GWAFVDVNYGG  534 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asr---------GyaVl~~NyRG  534 (548)
                      ||..||.+...|.+        ...|.||++||.|.+..  .|...+..|+..         ||.|+.+|.||
T Consensus        76 ~g~~i~~~~~~~~~--------~~~~plll~HG~~~s~~--~~~~~~~~L~~~~~~~~~~~~~~~vi~~dl~G  138 (388)
T 4i19_A           76 DGATIHFLHVRSPE--------PDATPMVITHGWPGTPV--EFLDIIGPLTDPRAHGGDPADAFHLVIPSLPG  138 (388)
T ss_dssp             TTEEEEEEEECCSS--------TTCEEEEEECCTTCCGG--GGHHHHHHHHCGGGGTSCGGGCEEEEEECCTT
T ss_pred             CCeEEEEEEccCCC--------CCCCeEEEECCCCCCHH--HHHHHHHHHhCcccccCCCCCCeEEEEEcCCC
Confidence            89999988877642        23477899999997654  355667788887         99999999998

>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A

Probab=93.89  E-value=0.04  Score=51.64  Aligned_cols=53  Identities=9%  Similarity=-0.044  Sum_probs=38.0

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +|.+++-...-+           ..|.||++||.+... ...|...++.|+.+||.|+.+|+||-
T Consensus        10 ~g~~l~~~~~g~-----------~~~~vvllHG~~~~~-~~~~~~~~~~l~~~g~~vi~~D~~G~   62 (254)
T 2ocg_A           10 NGVQLHYQQTGE-----------GDHAVLLLPGMLGSG-ETDFGPQLKNLNKKLFTVVAWDPRGY   62 (254)
T ss_dssp             TTEEEEEEEEEC-----------CSEEEEEECCTTCCH-HHHCHHHHHHSCTTTEEEEEECCTTS
T ss_pred             CCEEEEEEEecC-----------CCCeEEEECCCCCCC-ccchHHHHHHHhhCCCeEEEECCCCC
Confidence            787777544321           236799999987541 22356677889999999999999984

>3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A*

Probab=93.88  E-value=0.13  Score=53.23  Aligned_cols=72  Identities=15%  Similarity=0.220  Sum_probs=48.7

Q ss_pred             CCeEEEeecc-CCCeE--EEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccc--ccCc------c--------C---hHH
Q 008927          460 LPELIEFPTE-VPGQK--AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE--ARGI------L--------N---LSI  517 (548)
Q Consensus       460 ~pe~i~~~s~-~dG~~--i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~--~~~~------~--------~---~~~  517 (548)
                      ....|.|.+. .+|..  +-|.++.|+++.      .+.|+|.+-||--...  ..++      .        .   ..+
T Consensus        74 ~a~ri~Y~std~~G~p~~~~gtv~~P~~~~------~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~  147 (462)
T 3guu_A           74 ASFQLQYRTTNTQNEAVADVATVWIPAKPA------SPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPII  147 (462)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEECSSCC------SSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHH
T ss_pred             eEEEEEEEEECCCCCEEEEEEEEEecCCCC------CCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHH
Confidence            3456778776 24544  889999997631      2479999999964321  1111      0        1   235


Q ss_pred             HHH-HhcCcEEEEeCCCCCCC
Q 008927          518 QYW-TSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       518 Q~~-asrGyaVl~~NyRGStG  537 (548)
                      +.| +++||+|+.+||+|-.+
T Consensus       148 ~~~~l~~G~~Vv~~Dy~G~G~  168 (462)
T 3guu_A          148 IGWALQQGYYVVSSDHEGFKA  168 (462)
T ss_dssp             HHHHHHTTCEEEEECTTTTTT
T ss_pred             HHHHHhCCCEEEEecCCCCCC
Confidence            677 99999999999998654

>4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans}

Probab=93.79  E-value=0.013  Score=54.02  Aligned_cols=49  Identities=12%  Similarity=-0.021  Sum_probs=36.7

Q ss_pred             CCCCcEEEEEcc-CccccccCccChHHHHHHhcCcEEEEeCCCCCCCCChhhh
Q 008927          492 EEKPPLLVKSHG-GPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSVPS  543 (548)
Q Consensus       492 ~~~~Pliv~iHG-GP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~~f~  543 (548)
                      ++..|+||++|| |-++.   .|....+.|...||+|+.||.+|...|+..+.
T Consensus        19 ~~a~~~Vv~lHG~G~~~~---~~~~l~~~l~~~~~~v~~P~~~g~~w~~~~~~   68 (210)
T 4h0c_A           19 QRAKKAVVMLHGRGGTAA---DIISLQKVLKLDEMAIYAPQATNNSWYPYSFM   68 (210)
T ss_dssp             TTCSEEEEEECCTTCCHH---HHHGGGGTSSCTTEEEEEECCGGGCSSSSCTT
T ss_pred             ccCCcEEEEEeCCCCCHH---HHHHHHHHhCCCCeEEEeecCCCCCccccccC
Confidence            445699999999 54433   34455677788999999999999888875543

>3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A*

Probab=93.78  E-value=0.15  Score=52.15  Aligned_cols=55  Identities=16%  Similarity=0.070  Sum_probs=43.0

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHh------cCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS------RGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~as------rGyaVl~~NyRGS  535 (548)
                      ||..||.....+.+        ...|.||++||.|.+..  .|...+..|+.      .||.|+.+|.+|-
T Consensus        93 ~g~~i~~~~~~~~~--------~~~~pllllHG~~~s~~--~~~~~~~~L~~~~~~~~~gf~vv~~DlpG~  153 (408)
T 3g02_A           93 EGLTIHFAALFSER--------EDAVPIALLHGWPGSFV--EFYPILQLFREEYTPETLPFHLVVPSLPGY  153 (408)
T ss_dssp             TTEEEEEEEECCSC--------TTCEEEEEECCSSCCGG--GGHHHHHHHHHHCCTTTCCEEEEEECCTTS
T ss_pred             CCEEEEEEEecCCC--------CCCCeEEEECCCCCcHH--HHHHHHHHHhcccccccCceEEEEECCCCC
Confidence            89999988887642        22367899999997654  36666788888      5999999999984

>3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum}

Probab=93.76  E-value=0.042  Score=50.42  Aligned_cols=38  Identities=13%  Similarity=0.290  Sum_probs=28.9

Q ss_pred             CCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       494 ~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +.|+||++||.+.....  |. ....|+ +||.|+.+|+||.
T Consensus        15 ~~~~vv~~hG~~~~~~~--~~-~~~~l~-~g~~v~~~d~~g~   52 (245)
T 3e0x_A           15 SPNTLLFVHGSGCNLKI--FG-ELEKYL-EDYNCILLDLKGH   52 (245)
T ss_dssp             CSCEEEEECCTTCCGGG--GT-TGGGGC-TTSEEEEECCTTS
T ss_pred             CCCEEEEEeCCcccHHH--HH-HHHHHH-hCCEEEEecCCCC
Confidence            45899999999876654  33 344454 8999999999984

>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40

Probab=93.75  E-value=0.042  Score=54.73  Aligned_cols=40  Identities=10%  Similarity=-0.002  Sum_probs=30.1

Q ss_pred             CcEEEEEccCccccccC------c-cChHH---HHHHhcCcEEEEeCCCC
Q 008927          495 PPLLVKSHGGPTSEARG------I-LNLSI---QYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       495 ~Pliv~iHGGP~~~~~~------~-~~~~~---Q~~asrGyaVl~~NyRG  534 (548)
                      .|.||++||.+......      + |...+   +.|+++||.|+.+|+||
T Consensus        59 ~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~vi~~D~~G  108 (377)
T 2b61_A           59 NNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLG  108 (377)
T ss_dssp             CCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTT
T ss_pred             CCeEEEeCCCCCccccccccccchhhhhccCcccccccCCceEEEecCCC
Confidence            48999999998776541      1 33333   24778999999999999

>1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14

Probab=93.72  E-value=0.024  Score=52.10  Aligned_cols=40  Identities=8%  Similarity=-0.056  Sum_probs=29.6

Q ss_pred             CCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCC
Q 008927          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYG  533 (548)
Q Consensus       492 ~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyR  533 (548)
                      +++.|+||++||+.....  .|....+.|+++||.|+.+|.+
T Consensus        20 ~~~~~~vv~lHG~~~~~~--~~~~~~~~l~~~g~~v~~~~~~   59 (232)
T 1fj2_A           20 RKATAAVIFLHGLGDTGH--GWAEAFAGIRSSHIKYICPHAP   59 (232)
T ss_dssp             SCCSEEEEEECCSSSCHH--HHHHHHHTTCCTTEEEEECCCC
T ss_pred             CCCCceEEEEecCCCccc--hHHHHHHHHhcCCcEEEecCCC
Confidence            356799999999976443  3455567778889999999433

>3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str}

Probab=93.71  E-value=0.085  Score=52.17  Aligned_cols=63  Identities=13%  Similarity=0.055  Sum_probs=40.6

Q ss_pred             EEeeccCCCeEE----EEEEEcCCCCCCCCCCCCCCcEEEEEccCcccccc----------Cc-cChHH---HHHHhcCc
Q 008927          464 IEFPTEVPGQKA----YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR----------GI-LNLSI---QYWTSRGW  525 (548)
Q Consensus       464 i~~~s~~dG~~i----~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~----------~~-~~~~~---Q~~asrGy  525 (548)
                      -.|+.. +|.++    +...+-+.+       ..+.|+||++||.+.....          .+ |...+   +.++++||
T Consensus        15 ~~~~~~-~g~~l~~~i~y~~~g~~~-------~~~~p~vll~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~   86 (377)
T 3i1i_A           15 KEYTFE-NGRTIPVQMGYETYGTLN-------RERSNVILICHYFSATSHAAGKYTAHDEESGWWDGLIGPGKAIDTNQY   86 (377)
T ss_dssp             EEEECT-TSCEEEEEEEEEEESCCC-------TTCCCEEEEECCTTCCSCCSSCSSTTCSSCCTTTTTEETTSSEETTTC
T ss_pred             cceeec-CCCEeeeeEEEEeecccC-------CCCCCEEEEeccccCcchhccccccccccccchhhhcCCCCccccccE
Confidence            346666 77766    222232211       2345899999999877543          11 33333   56788999


Q ss_pred             EEEEeCCCC
Q 008927          526 AFVDVNYGG  534 (548)
Q Consensus       526 aVl~~NyRG  534 (548)
                      .|+.+|.||
T Consensus        87 ~vi~~D~~G   95 (377)
T 3i1i_A           87 FVICTDNLC   95 (377)
T ss_dssp             EEEEECCTT
T ss_pred             EEEEecccc
Confidence            999999994

>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica}

Probab=93.69  E-value=0.049  Score=51.13  Aligned_cols=38  Identities=13%  Similarity=0.246  Sum_probs=31.2

Q ss_pred             cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      |+||++||.+....  .|....+.|+. ||.|+.+|+||-.
T Consensus        29 ~~vv~lHG~~~~~~--~~~~~~~~l~~-g~~v~~~d~~G~G   66 (282)
T 3qvm_A           29 KTVLLAHGFGCDQN--MWRFMLPELEK-QFTVIVFDYVGSG   66 (282)
T ss_dssp             CEEEEECCTTCCGG--GGTTTHHHHHT-TSEEEECCCTTST
T ss_pred             CeEEEECCCCCCcc--hHHHHHHHHhc-CceEEEEecCCCC
Confidence            89999999876543  56667788887 9999999999854

>4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A

Probab=93.67  E-value=0.041  Score=51.33  Aligned_cols=40  Identities=18%  Similarity=0.215  Sum_probs=31.5

Q ss_pred             CCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       493 ~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +..|+||++||.+....  .|....+.|+. ||.|+.+|+||-
T Consensus        18 ~~~p~vv~~HG~~~~~~--~~~~~~~~l~~-g~~v~~~D~~G~   57 (269)
T 4dnp_A           18 SGERVLVLAHGFGTDQS--AWNRILPFFLR-DYRVVLYDLVCA   57 (269)
T ss_dssp             SCSSEEEEECCTTCCGG--GGTTTGGGGTT-TCEEEEECCTTS
T ss_pred             CCCCEEEEEeCCCCcHH--HHHHHHHHHhC-CcEEEEEcCCCC
Confidence            34589999999886543  45566677887 999999999983

>3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A

Probab=93.64  E-value=0.15  Score=48.32  Aligned_cols=50  Identities=14%  Similarity=0.190  Sum_probs=38.3

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ||.+++....-            +-|.||++||.+....  .|....+.|+. ||.|+.+|+||-
T Consensus        21 ~g~~l~~~~~g------------~~~~vv~lHG~~~~~~--~~~~~~~~l~~-~~~v~~~D~~G~   70 (306)
T 3r40_A           21 SSGRIFARVGG------------DGPPLLLLHGFPQTHV--MWHRVAPKLAE-RFKVIVADLPGY   70 (306)
T ss_dssp             TTCCEEEEEEE------------CSSEEEEECCTTCCGG--GGGGTHHHHHT-TSEEEEECCTTS
T ss_pred             CCEEEEEEEcC------------CCCeEEEECCCCCCHH--HHHHHHHHhcc-CCeEEEeCCCCC
Confidence            78887765532            1278999999987654  46667788888 999999999985

>2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica}

Probab=93.62  E-value=0.14  Score=49.48  Aligned_cols=52  Identities=15%  Similarity=0.117  Sum_probs=38.9

Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       473 ~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      .+++....-|.         ..-|.||++||.|...  ..|...+..|+.+||-|+.+|.||-
T Consensus        33 ~~l~y~~~G~~---------~~g~~vvllHG~~~~~--~~w~~~~~~L~~~g~rvia~Dl~G~   84 (297)
T 2xt0_A           33 LRMHYVDEGPR---------DAEHTFLCLHGEPSWS--FLYRKMLPVFTAAGGRVVAPDLFGF   84 (297)
T ss_dssp             CCEEEEEESCT---------TCSCEEEEECCTTCCG--GGGTTTHHHHHHTTCEEEEECCTTS
T ss_pred             eEEEEEEccCC---------CCCCeEEEECCCCCcc--eeHHHHHHHHHhCCcEEEEeCCCCC
Confidence            77876665431         1126789999998654  3566778889999999999999984

>3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A*

Probab=93.60  E-value=0.021  Score=54.55  Aligned_cols=71  Identities=18%  Similarity=0.121  Sum_probs=35.5

Q ss_pred             CCeEEEeeccCCCeE-EEEEEEcCCC-CCCC-CCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCC
Q 008927          460 LPELIEFPTEVPGQK-AYAYYYPPSN-PIYQ-ASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~-i~g~l~~P~~-~~~~-~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      ..|.+.|++. ++.+ ...|+..+.. +.-. +..+...|.||++||.+....  .|....+.|+. ||.|+.+|+||
T Consensus        14 ~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvllHG~~~~~~--~~~~l~~~L~~-~~~v~~~D~~G   87 (280)
T 3qmv_A           14 GTENLYFQSN-ALLSQRSAWFPRPVAAPAAEPPDPAAAPLRLVCFPYAGGTVS--AFRGWQERLGD-EVAVVPVQLPG   87 (280)
T ss_dssp             ---------------CHHHHSCCCCCCCCCCCCCTTTCSEEEEEECCTTCCGG--GGTTHHHHHCT-TEEEEECCCTT
T ss_pred             Ccceeeeecc-hhhhhcchheecCCCCCcccccccCCCCceEEEECCCCCChH--HHHHHHHhcCC-CceEEEEeCCC
Confidence            4567888886 6643 3445554321 0000 001122388999999886543  46677788877 99999999998

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=93.57  E-value=3  Score=41.29  Aligned_cols=84  Identities=10%  Similarity=0.028  Sum_probs=46.2

Q ss_pred             cEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEc---CCCCCcccCCcCceECcC-
Q 008927          236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA---GFDPTIVESPTEPKWSSK-  311 (548)
Q Consensus       236 ~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~---~~~~~~~~~~~~~~wspD-  311 (548)
                      .+.+..+-..-...+|.|||+ | |++..       ...|++++ +  |+......+.   ...    .....+.++|| 
T Consensus        23 ~~~va~~l~~P~~ia~~pdG~-l-~V~e~-------~g~I~~i~-~--g~~~~~~~~~v~~~g~----~~p~gia~~pdf   86 (352)
T 2ism_A           23 VEEVVGGLEVPWALAFLPDGG-M-LIAER-------PGRIRLFR-E--GRLSTYAELSVYHRGE----SGLLGLALHPRF   86 (352)
T ss_dssp             EEEEECCCSCEEEEEECTTSC-E-EEEET-------TTEEEEEE-T--TEEEEEEECCCCCSTT----CSEEEEEECTTT
T ss_pred             EEEEECCCCCceEEEEcCCCe-E-EEEeC-------CCeEEEEE-C--CCccEeecceEeecCC----CCceeEEECCCC
Confidence            455665544445678999998 4 44422       25788887 3  4321111111   111    23456789998 


Q ss_pred             --Cc-EEEEEeCCCC--eeeEEEEeccCC
Q 008927          312 --GE-LFFVTDRKNG--FWNLHKWIESNN  335 (548)
Q Consensus       312 --G~-L~~~sd~~~g--~~~Ly~~d~~~g  335 (548)
                        +. ||+......+  ...|++++.+++
T Consensus        87 ~~~g~lYv~~~~~~~~~~~~v~r~~~~~~  115 (352)
T 2ism_A           87 PQEPYVYAYRTVAEGGLRNQVVRLRHLGE  115 (352)
T ss_dssp             TTSCEEEEEEEECTTSSEEEEEEEEECSS
T ss_pred             CCCCEEEEEEecCCCCCccEEEEEEeCCC
Confidence              55 6554322011  257999988655

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=93.56  E-value=10  Score=41.29  Aligned_cols=52  Identities=13%  Similarity=0.072  Sum_probs=32.9

Q ss_pred             EEEEEEECCCCceE-eecCCCcee-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          381 SYLGILDDFGHSLS-LLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       381 ~~L~~~dl~~g~~~-~l~~~~~~~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      ..|+.+|+.+|++. ++..+.... ..++..++ ++|+++   .-..|+.+|.++|+.
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg-lvf~gt---~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGN-LVFEGS---ADGRVIAYAADTGEK  508 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTT-EEEEEC---TTSEEEEEETTTCCE
T ss_pred             eeEEEEECCCCCeEeEccCCCCccCccceECCC-EEEEEC---CCCcEEEEECCCCcc
Confidence            67999999999754 333322222 23455566 445553   347899999998873

>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis}

Probab=93.42  E-value=0.11  Score=50.98  Aligned_cols=56  Identities=18%  Similarity=0.260  Sum_probs=39.2

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCC-cEEEEEccCccccccCccChHHHHHHh-cCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKP-PLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~-Pliv~iHGGP~~~~~~~~~~~~Q~~as-rGyaVl~~NyRGS  535 (548)
                      +|.+++...+-|.+       +.++ +.||++||+|.+..  .|...+..|+. .||.|+.+|.||-
T Consensus        36 ~g~~l~y~~~G~~~-------~~~~g~plvllHG~~~~~~--~w~~~~~~l~~~~~~~Via~D~rG~   93 (330)
T 3nwo_A           36 GDHETWVQVTTPEN-------AQPHALPLIVLHGGPGMAH--NYVANIAALADETGRTVIHYDQVGC   93 (330)
T ss_dssp             TTEEEEEEEECCSS-------CCTTCCCEEEECCTTTCCS--GGGGGGGGHHHHHTCCEEEECCTTS
T ss_pred             cCcEEEEEEecCcc-------CCCCCCcEEEECCCCCCch--hHHHHHHHhccccCcEEEEECCCCC
Confidence            78899888887632       1111 24778899987654  34445566776 7999999999984

>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis}

Probab=93.22  E-value=0.15  Score=47.53  Aligned_cols=37  Identities=22%  Similarity=0.149  Sum_probs=30.0

Q ss_pred             cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      |.||++||++.....  |....+.|+. ||.|+.+|+||.
T Consensus        24 ~~vv~~HG~~~~~~~--~~~~~~~L~~-~~~vi~~d~~G~   60 (278)
T 3oos_A           24 PPLCVTHLYSEYNDN--GNTFANPFTD-HYSVYLVNLKGC   60 (278)
T ss_dssp             SEEEECCSSEECCTT--CCTTTGGGGG-TSEEEEECCTTS
T ss_pred             CeEEEEcCCCcchHH--HHHHHHHhhc-CceEEEEcCCCC
Confidence            679999999876543  5666677777 999999999984

>1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A*

Probab=93.18  E-value=0.12  Score=49.89  Aligned_cols=60  Identities=17%  Similarity=0.156  Sum_probs=38.9

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +...++.. ||.+++-...-+.         + -|.||++||+|.+...   .....+|..+||.|+.+|.||-
T Consensus        15 ~~~~~~~~-~g~~l~~~~~g~~---------~-g~~vvllHG~~~~~~~---~~~~~~~~~~~~~vi~~D~~G~   74 (317)
T 1wm1_A           15 DSGWLDTG-DGHRIYWELSGNP---------N-GKPAVFIHGGPGGGIS---PHHRQLFDPERYKVLLFDQRGC   74 (317)
T ss_dssp             EEEEEECS-SSCEEEEEEEECT---------T-SEEEEEECCTTTCCCC---GGGGGGSCTTTEEEEEECCTTS
T ss_pred             eeeEEEcC-CCcEEEEEEcCCC---------C-CCcEEEECCCCCcccc---hhhhhhccccCCeEEEECCCCC
Confidence            44556776 8888875443221         1 2558999999864422   1223455568999999999993

>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0

Probab=93.15  E-value=0.22  Score=47.04  Aligned_cols=55  Identities=16%  Similarity=0.156  Sum_probs=40.8

Q ss_pred             eeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCC
Q 008927          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       466 ~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      |.+. ||.+++-...-+.          ..|+||++||.+....  .|...+..|+. +|.|+.+|.||
T Consensus         9 ~~~~-~g~~l~y~~~G~~----------~~p~lvl~hG~~~~~~--~w~~~~~~L~~-~~~vi~~D~rG   63 (266)
T 3om8_A            9 LATS-DGASLAYRLDGAA----------EKPLLALSNSIGTTLH--MWDAQLPALTR-HFRVLRYDARG   63 (266)
T ss_dssp             EECT-TSCEEEEEEESCT----------TSCEEEEECCTTCCGG--GGGGGHHHHHT-TCEEEEECCTT
T ss_pred             Eecc-CCcEEEEEecCCC----------CCCEEEEeCCCccCHH--HHHHHHHHhhc-CcEEEEEcCCC
Confidence            4565 8999887665431          2378899999876543  46666777775 79999999998

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.11  E-value=2.8  Score=43.20  Aligned_cols=103  Identities=10%  Similarity=0.049  Sum_probs=51.6

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCCCceecCCCCC-----CCCceecceeeCCC---CCEEEEEEecc-CCCCC---CceeEE
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG-----EPLVSYADGIFDPR---FNRYVTVREDR-RQDAL---NSTTEI  223 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~-----~~~~~~~~~~~SpD---G~~i~~v~~~~-~~~~~---~~~~~l  223 (548)
                      +|+++....++|++++.++  +..+.+.....     .......+++|+||   +.+|++..... ....+   ...+.|
T Consensus        39 ~l~V~e~~gg~I~~~~~~~--g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v  116 (454)
T 1cru_A           39 QIWLTERATGKILRVNPES--GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTII  116 (454)
T ss_dssp             CEEEEETTTCEEEEECTTT--CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEE
T ss_pred             cEEEEEcCCCEEEEEECCC--CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEE
Confidence            5666654445899998754  44443322110     00112346889997   66665443221 00000   124689


Q ss_pred             EEEECCCCC--ccCcEEeee-c----CCceeeeEECCCCCEEEEE
Q 008927          224 VAIALNGQN--IQEPKVLVS-G----SDFYAFPRMDPRGERMAWI  261 (548)
Q Consensus       224 ~~idl~~g~--~~~~~~L~~-~----~~~~~~p~~SPDGk~La~~  261 (548)
                      ++++++.+.  ....+.|.. .    ..+-....|+|||+ |.+.
T Consensus       117 ~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~  160 (454)
T 1cru_A          117 RRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYT  160 (454)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEE
T ss_pred             EEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEE
Confidence            988876432  111233332 1    11235678999997 5433

>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A

Probab=93.09  E-value=0.15  Score=49.00  Aligned_cols=54  Identities=19%  Similarity=0.178  Sum_probs=38.1

Q ss_pred             CC-eEEEEEEEcCCCCCCCCCCCCCCcEEEEEccC-ccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PG-QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGG-PTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG-~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGG-P~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +| ..++-...-+         + +.|.||++||. |.+.....|...+..|+++ |.|+.+|.||-
T Consensus        21 ~g~~~l~y~~~G~---------g-~~~~vvllHG~~pg~~~~~~w~~~~~~L~~~-~~via~Dl~G~   76 (291)
T 2wue_A           21 DGPLKLHYHEAGV---------G-NDQTVVLLHGGGPGAASWTNFSRNIAVLARH-FHVLAVDQPGY   76 (291)
T ss_dssp             SSEEEEEEEEECT---------T-CSSEEEEECCCCTTCCHHHHTTTTHHHHTTT-SEEEEECCTTS
T ss_pred             CCcEEEEEEecCC---------C-CCCcEEEECCCCCccchHHHHHHHHHHHHhc-CEEEEECCCCC
Confidence            78 8887554321         2 22689999996 6544444566677788766 99999999983

>1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7

Probab=93.04  E-value=0.13  Score=49.48  Aligned_cols=60  Identities=15%  Similarity=0.190  Sum_probs=38.9

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +...++.. ||..++-...-+.          .-|.||++||+|.+...   .....+|..+||.|+.+|.||-
T Consensus        12 ~~~~~~~~-~g~~l~y~~~G~~----------~g~pvvllHG~~~~~~~---~~~~~~~~~~~~~vi~~D~~G~   71 (313)
T 1azw_A           12 QQGSLKVD-DRHTLYFEQCGNP----------HGKPVVMLHGGPGGGCN---DKMRRFHDPAKYRIVLFDQRGS   71 (313)
T ss_dssp             EEEEEECS-SSCEEEEEEEECT----------TSEEEEEECSTTTTCCC---GGGGGGSCTTTEEEEEECCTTS
T ss_pred             ccceEEcC-CCCEEEEEecCCC----------CCCeEEEECCCCCcccc---HHHHHhcCcCcceEEEECCCCC
Confidence            44556665 8888875544221          12558999999865432   1223455568999999999993

>3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A

Probab=92.94  E-value=0.26  Score=46.72  Aligned_cols=50  Identities=16%  Similarity=0.100  Sum_probs=38.9

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ||.+++-...-            .-|.||++||++....  .|...++.|+.+ |.|+.+|+||-
T Consensus        18 ~g~~l~~~~~g------------~~~~vv~lHG~~~~~~--~~~~~~~~L~~~-~~vi~~D~~G~   67 (301)
T 3kda_A           18 DGVKLHYVKGG------------QGPLVMLVHGFGQTWY--EWHQLMPELAKR-FTVIAPDLPGL   67 (301)
T ss_dssp             TTEEEEEEEEE------------SSSEEEEECCTTCCGG--GGTTTHHHHTTT-SEEEEECCTTS
T ss_pred             CCeEEEEEEcC------------CCCEEEEECCCCcchh--HHHHHHHHHHhc-CeEEEEcCCCC
Confidence            88888755432            2378999999986653  467778889988 99999999984

>3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0

Probab=92.85  E-value=0.054  Score=49.18  Aligned_cols=39  Identities=13%  Similarity=0.065  Sum_probs=28.3

Q ss_pred             CCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       493 ~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ++.| ||++||.....  ..|....+.|+ .||.|+.+|.+++
T Consensus        15 ~~~p-vv~lHG~g~~~--~~~~~~~~~l~-~~~~v~~~~~~~~   53 (209)
T 3og9_A           15 DLAP-LLLLHSTGGDE--HQLVEIAEMIA-PSHPILSIRGRIN   53 (209)
T ss_dssp             TSCC-EEEECCTTCCT--TTTHHHHHHHS-TTCCEEEECCSBC
T ss_pred             CCCC-EEEEeCCCCCH--HHHHHHHHhcC-CCceEEEecCCcC
Confidence            4568 99999976433  34556667777 8999999996643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=92.81  E-value=12  Score=39.90  Aligned_cols=53  Identities=8%  Similarity=-0.002  Sum_probs=32.5

Q ss_pred             eEEEEEEECCCCceE-eecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          380 RSYLGILDDFGHSLS-LLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       380 ~~~L~~~dl~~g~~~-~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      ...|+.+|+.+|++. +...+..... .+...++.+ |+++   ....|+.+|.++|+.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglv-f~g~---~dg~l~A~D~~tG~~  519 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLV-FTGT---GDGYFKAFDAKSGKE  519 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEE-EEEC---TTSEEEEEETTTCCE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEE-EEEC---CCCcEEEEECCCCCE
Confidence            467999999999754 3332222222 234455654 4443   246899999988873

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=92.78  E-value=4.5  Score=40.02  Aligned_cols=167  Identities=13%  Similarity=0.049  Sum_probs=80.5

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCC--CCCCCceecceeeCCC---CCEEEEEEec-cCCCCCCceeE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPD--YGEPLVSYADGIFDPR---FNRYVTVRED-RRQDALNSTTE  222 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~--~~~~~~~~~~~~~SpD---G~~i~~v~~~-~~~~~~~~~~~  222 (548)
                      +|.++| +|+++. ..++|++++.++   + +.+...  .........++.++||   +..|++.... ..+  ....+.
T Consensus        35 a~~pdG-~l~V~e-~~g~I~~~d~~G---~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~--~~~~~~  106 (354)
T 3a9g_A           35 APLGGG-RYLVTE-RPGRLVLISPSG---K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG--GHIRNR  106 (354)
T ss_dssp             EEEETT-EEEEEE-TTTEEEEECSSC---E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG--GCEEEE
T ss_pred             EEcCCC-eEEEEe-CCCEEEEEeCCC---c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC--CCcceE
Confidence            455554 566655 458999998553   3 333210  0001123456789998   6665443221 110  012368


Q ss_pred             EEEEECCCC--CccCcEEeee---cCC--ceeeeEECCCCCEEEEEEecCCCCC-------CCCceEEEEEecCCCcee-
Q 008927          223 IVAIALNGQ--NIQEPKVLVS---GSD--FYAFPRMDPRGERMAWIEWHHPNMP-------WDKAELWVGYISENGDVY-  287 (548)
Q Consensus       223 l~~idl~~g--~~~~~~~L~~---~~~--~~~~p~~SPDGk~La~~~~~~~~~p-------~~~~~L~v~~~~~~g~~~-  287 (548)
                      |++++++++  .....+.|..   ...  +-....|+|||+ |+ ++......+       .....|+.++.+  |++. 
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Ly-vt~G~~~~~~~~~d~~~~~G~I~ri~~d--G~~p~  182 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LY-ITTGDAADPRLAQDLSSLAGKILRVDEE--GRPPA  182 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EE-EECCCTTCGGGGTCTTCCSSEEEEECTT--SCCCT
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EE-EEECCCCCCccccCCCCCCeEEEEEcCC--CCCCC
Confidence            999998765  1111233322   111  224578999996 54 442211110       012467776654  3210 


Q ss_pred             -----eeEEEcCCCCCcccCCcCceECc-CCcEEEEEeCCCCeeeEEEEe
Q 008927          288 -----KRVCVAGFDPTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWI  331 (548)
Q Consensus       288 -----~~~~l~~~~~~~~~~~~~~~wsp-DG~L~~~sd~~~g~~~Ly~~d  331 (548)
                           ...+++.+-    .....+.|+| +|+||+..........|.++.
T Consensus       183 ~npf~~~~i~a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~  228 (354)
T 3a9g_A          183 DNPFPNSPIWSYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL  228 (354)
T ss_dssp             TSSSTTCCEEEECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC
T ss_pred             CCCCCCCcEEEEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEec
Confidence                 012222221    2345688999 566766543212334455553

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=92.78  E-value=7.1  Score=37.41  Aligned_cols=244  Identities=4%  Similarity=-0.098  Sum_probs=119.0

Q ss_pred             CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEecc--CCCCCCceeEEEEEECCCCCccCcEEeeec
Q 008927          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDR--RQDALNSTTEIVAIALNGQNIQEPKVLVSG  242 (548)
Q Consensus       165 ~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~--~~~~~~~~~~l~~idl~~g~~~~~~~L~~~  242 (548)
                      ..++.+|+..  ++-+. .+... +..|...-....+++.+++--...  ........++++++|+.+++   -+.+...
T Consensus        13 ~~~~~yd~~~--~~W~~-~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~---W~~~~~~   85 (315)
T 4asc_A           13 EGAVAYDPAA--NECYC-ASLSS-QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE---WLGMPPL   85 (315)
T ss_dssp             TEEEEEETTT--TEEEE-EECCC-CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE---EEECCCB
T ss_pred             CceEEECCCC--CeEec-CCCCC-CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe---EEECCCC
Confidence            5688888875  33322 22110 112322223344666544432211  11111234569999999887   4555433


Q ss_pred             CCc---eeeeEECCCCCEEEEEE-ecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEE
Q 008927          243 SDF---YAFPRMDPRGERMAWIE-WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT  318 (548)
Q Consensus       243 ~~~---~~~p~~SPDGk~La~~~-~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~s  318 (548)
                      +..   .....+  ++ +|..+. .+.....-....++++|... +++   ..+...+ .  .......-.-+++||++.
T Consensus        86 p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~-~~W---~~~~~~p-~--~r~~~~~~~~~~~iyv~G  155 (315)
T 4asc_A           86 PSPRCLFGLGEA--LN-SIYVVGGREIKDGERCLDSVMCYDRLS-FKW---GESDPLP-Y--VVYGHTVLSHMDLVYVIG  155 (315)
T ss_dssp             SSCEESCEEEEE--TT-EEEEECCEESSTTCCBCCCEEEEETTT-TEE---EECCCCS-S--CCBSCEEEEETTEEEEEC
T ss_pred             CcchhceeEEEE--CC-EEEEEeCCcCCCCCcccceEEEECCCC-CcE---eECCCCC-C--cccceeEEEECCEEEEEe
Confidence            221   111122  44 444332 21100001245799999874 443   3333222 1  111122223567777773


Q ss_pred             eC---CCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC---eEEEEEEECCCCc
Q 008927          319 DR---KNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---RSYLGILDDFGHS  392 (548)
Q Consensus       319 d~---~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g---~~~L~~~dl~~g~  392 (548)
                      -.   ..-...++++|+.+++.+.+.+..    .+...   .....     -++.||+.--.++   ...++++|+++++
T Consensus       156 G~~~~~~~~~~~~~yd~~~~~W~~~~~~p----~~r~~---~~~~~-----~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          156 GKGSDRKCLNKMCVYDPKKFEWKELAPMQ----TARSL---FGATV-----HDGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             CBCTTSCBCCCEEEEETTTTEEEECCCCS----SCCBS---CEEEE-----ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCCCCCcccceEEEEeCCCCeEEECCCCC----Cchhc---eEEEE-----ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence            22   122356999999998887775321    11111   01122     2445665533222   4578999999999


Q ss_pred             eEeecC-CCcee-EeeeecCCEEEEEEecC-----------CCCCeEEEEEcCCCcee
Q 008927          393 LSLLDI-PFTDI-DNITLGNDCLFVEGASG-----------VEPSSVAKVTLDDHKLK  437 (548)
Q Consensus       393 ~~~l~~-~~~~~-~~~s~d~~~l~~~~ss~-----------~~p~~l~~~d~~~~~~~  437 (548)
                      ++.+.. +.... ..+..-++.|++++...           ....+++++|+++.+.+
T Consensus       224 W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  281 (315)
T 4asc_A          224 WAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE  281 (315)
T ss_dssp             EEEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred             EEECCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence            988864 22111 11223355676666431           12357889998877653

>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti}

Probab=92.67  E-value=0.2  Score=48.28  Aligned_cols=50  Identities=14%  Similarity=0.147  Sum_probs=37.0

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +|..++.....|            .|+||++||++....  .|....+.|++ ||.|+.+|+||.
T Consensus        56 ~~~~~~~~~~g~------------~p~vv~lhG~~~~~~--~~~~~~~~L~~-~~~v~~~D~~G~  105 (314)
T 3kxp_A           56 GRITLNVREKGS------------GPLMLFFHGITSNSA--VFEPLMIRLSD-RFTTIAVDQRGH  105 (314)
T ss_dssp             SSCEEEEEEECC------------SSEEEEECCTTCCGG--GGHHHHHTTTT-TSEEEEECCTTS
T ss_pred             CCEEEEEEecCC------------CCEEEEECCCCCCHH--HHHHHHHHHHc-CCeEEEEeCCCc
Confidence            677777655422            378999999986543  45556677777 699999999985

>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A

Probab=92.66  E-value=0.1  Score=49.57  Aligned_cols=39  Identities=10%  Similarity=0.143  Sum_probs=31.6

Q ss_pred             CcEEEEEccCccccccCccC-hHHHHHHhcCcEEEEeCCCCC
Q 008927          495 PPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       495 ~Pliv~iHGGP~~~~~~~~~-~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      .|.||++||.+.....  |. .....|+++||.|+.+|+||-
T Consensus        43 ~~~vv~lHG~~~~~~~--~~~~~~~~l~~~g~~vi~~D~~G~   82 (293)
T 3hss_A           43 GDPVVFIAGRGGAGRT--WHPHQVPAFLAAGYRCITFDNRGI   82 (293)
T ss_dssp             SEEEEEECCTTCCGGG--GTTTTHHHHHHTTEEEEEECCTTS
T ss_pred             CCEEEEECCCCCchhh--cchhhhhhHhhcCCeEEEEccCCC
Confidence            3789999999876543  44 456789999999999999985

>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli}

Probab=92.62  E-value=0.081  Score=50.57  Aligned_cols=39  Identities=15%  Similarity=0.233  Sum_probs=29.0

Q ss_pred             cEEEEEccC-ccccccCccChHH-HHHHhcCcEEEEeCCCCC
Q 008927          496 PLLVKSHGG-PTSEARGILNLSI-QYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       496 Pliv~iHGG-P~~~~~~~~~~~~-Q~~asrGyaVl~~NyRGS  535 (548)
                      |.||++||. |.+.....|...+ ..|+.+ |.|+.+|+||-
T Consensus        37 ~~vvllHG~~~~~~~~~~~~~~~~~~l~~~-~~vi~~D~~G~   77 (289)
T 1u2e_A           37 ETVVLLHGSGPGATGWANFSRNIDPLVEAG-YRVILLDCPGW   77 (289)
T ss_dssp             SEEEEECCCSTTCCHHHHTTTTHHHHHHTT-CEEEEECCTTS
T ss_pred             ceEEEECCCCcccchhHHHHHhhhHHHhcC-CeEEEEcCCCC
Confidence            489999995 6544444566666 667655 99999999984

>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A

Probab=92.56  E-value=0.069  Score=50.01  Aligned_cols=39  Identities=18%  Similarity=0.241  Sum_probs=30.9

Q ss_pred             cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      |.||++||.+....  .|....+.|+++||.|+.+|+||-.
T Consensus        17 ~~vvllHG~~~~~~--~~~~~~~~L~~~g~~vi~~D~~GhG   55 (247)
T 1tqh_A           17 RAVLLLHGFTGNSA--DVRMLGRFLESKGYTCHAPIYKGHG   55 (247)
T ss_dssp             CEEEEECCTTCCTH--HHHHHHHHHHHTTCEEEECCCTTSS
T ss_pred             cEEEEECCCCCChH--HHHHHHHHHHHCCCEEEecccCCCC
Confidence            67889999865443  3556678899999999999999843

>1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10

Probab=92.29  E-value=0.19  Score=48.26  Aligned_cols=52  Identities=15%  Similarity=0.201  Sum_probs=36.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccC-ccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGG-PTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGG-P~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +|.+++-...           +.. |.||++||. |.+.....|...++.|+.+ |.|+.+|+||-
T Consensus        24 ~g~~l~y~~~-----------g~g-~~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~Dl~G~   76 (296)
T 1j1i_A           24 GGVETRYLEA-----------GKG-QPVILIHGGGAGAESEGNWRNVIPILARH-YRVIAMDMLGF   76 (296)
T ss_dssp             TTEEEEEEEE-----------CCS-SEEEEECCCSTTCCHHHHHTTTHHHHTTT-SEEEEECCTTS
T ss_pred             CCEEEEEEec-----------CCC-CeEEEECCCCCCcchHHHHHHHHHHHhhc-CEEEEECCCCC
Confidence            7888764432           112 578999996 6544444566667778766 99999999984

>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18

Probab=92.15  E-value=0.13  Score=49.77  Aligned_cols=42  Identities=10%  Similarity=-0.140  Sum_probs=33.8

Q ss_pred             CCcEEEEEccCccccc---cCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          494 KPPLLVKSHGGPTSEA---RGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       494 ~~Pliv~iHGGP~~~~---~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ..|.||++||......   ...|....+.|+.+||.|+.+|++|.
T Consensus         6 ~~~~vvlvHG~~~~~~~~~~~~~~~~~~~L~~~G~~v~~~d~~g~   50 (285)
T 1ex9_A            6 TKYPIVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQL   50 (285)
T ss_dssp             CSSCEEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCSS
T ss_pred             CCCeEEEeCCCCCCccccccccHHHHHHHHHhCCCEEEEEeCCCC
Confidence            3477899999876543   34677788999999999999999964

>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A

Probab=92.15  E-value=0.075  Score=50.89  Aligned_cols=52  Identities=21%  Similarity=0.197  Sum_probs=36.0

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEcc-CccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG-GPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHG-GP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +|.+++-...           |+. |.||++|| |+.+.....|...+..| ++||.|+.+|.||-
T Consensus        13 ~g~~l~y~~~-----------G~g-~~vvllHG~~~~~~~~~~w~~~~~~L-~~~~~vi~~Dl~G~   65 (282)
T 1iup_A           13 AGVLTNYHDV-----------GEG-QPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVGF   65 (282)
T ss_dssp             TTEEEEEEEE-----------CCS-SEEEEECCCCTTCCHHHHHTTTHHHH-TTTSEEEEECCTTS
T ss_pred             CCEEEEEEec-----------CCC-CeEEEECCCCCCccHHHHHHHHHHhh-ccCCEEEEECCCCC
Confidence            7877765442           112 56999999 66554333566666667 78999999999983

>3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida}

Probab=91.88  E-value=0.21  Score=46.39  Aligned_cols=52  Identities=12%  Similarity=0.092  Sum_probs=38.1

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ||.+++....-+.          .-|+||++||.+....  .|...++.|+ ++|.|+.+|+||-
T Consensus         7 ~g~~l~~~~~g~~----------~~~~vv~lHG~~~~~~--~~~~~~~~L~-~~~~v~~~D~~G~   58 (264)
T 3ibt_A            7 NGTLMTYSESGDP----------HAPTLFLLSGWCQDHR--LFKNLAPLLA-RDFHVICPDWRGH   58 (264)
T ss_dssp             TTEECCEEEESCS----------SSCEEEEECCTTCCGG--GGTTHHHHHT-TTSEEEEECCTTC
T ss_pred             CCeEEEEEEeCCC----------CCCeEEEEcCCCCcHh--HHHHHHHHHH-hcCcEEEEccccC
Confidence            6777775554331          2378999999987654  4667777785 4599999999984

>1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35

Probab=91.70  E-value=0.13  Score=48.46  Aligned_cols=39  Identities=23%  Similarity=0.209  Sum_probs=31.6

Q ss_pred             CcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       495 ~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      -|.||++||.+....  .|...+..|+++||.|+.+|+||-
T Consensus        16 ~~~vvllHG~~~~~~--~w~~~~~~L~~~~~~vi~~Dl~Gh   54 (264)
T 1r3d_A           16 TPLVVLVHGLLGSGA--DWQPVLSHLARTQCAALTLDLPGH   54 (264)
T ss_dssp             BCEEEEECCTTCCGG--GGHHHHHHHTTSSCEEEEECCTTC
T ss_pred             CCcEEEEcCCCCCHH--HHHHHHHHhcccCceEEEecCCCC
Confidence            378999999876553  466677888778999999999984

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=91.52  E-value=5.3  Score=39.38  Aligned_cols=123  Identities=11%  Similarity=-0.040  Sum_probs=65.5

Q ss_pred             cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee------ecCCceeeeEECCC---CCEEEEEEec
Q 008927          194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV------SGSDFYAFPRMDPR---GERMAWIEWH  264 (548)
Q Consensus       194 ~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~------~~~~~~~~p~~SPD---Gk~La~~~~~  264 (548)
                      ..+.|+|||+ | |+.+..        ..|++++  .++   .+.+.      .+.......+++||   +++|+ +...
T Consensus        34 ~~ia~~pdG~-l-~V~e~~--------g~I~~i~--~g~---~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lY-v~~~   97 (352)
T 2ism_A           34 WALAFLPDGG-M-LIAERP--------GRIRLFR--EGR---LSTYAELSVYHRGESGLLGLALHPRFPQEPYVY-AYRT   97 (352)
T ss_dssp             EEEEECTTSC-E-EEEETT--------TEEEEEE--TTE---EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEE-EEEE
T ss_pred             eEEEEcCCCe-E-EEEeCC--------CeEEEEE--CCC---ccEeecceEeecCCCCceeEEECCCCCCCCEEE-EEEe
Confidence            3567999997 3 444432        4788888  444   33332      12223445689999   66664 4422


Q ss_pred             CCCCCCCCceEEEEEecCCCceeeeE-EEcCCC--CCcccCCcCceECcCCcEEEEE-eCC---------CCeeeEEEEe
Q 008927          265 HPNMPWDKAELWVGYISENGDVYKRV-CVAGFD--PTIVESPTEPKWSSKGELFFVT-DRK---------NGFWNLHKWI  331 (548)
Q Consensus       265 ~~~~p~~~~~L~v~~~~~~g~~~~~~-~l~~~~--~~~~~~~~~~~wspDG~L~~~s-d~~---------~g~~~Ly~~d  331 (548)
                      .... .....|+.++.+. +.+...+ ++.+.+  .........+.|+|||.||+.. +..         .....|++++
T Consensus        98 ~~~~-~~~~~v~r~~~~~-~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~  175 (352)
T 2ism_A           98 VAEG-GLRNQVVRLRHLG-ERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLT  175 (352)
T ss_dssp             ECTT-SSEEEEEEEEECS-SCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEEC
T ss_pred             cCCC-CCccEEEEEEeCC-CCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEc
Confidence            1110 0125788888873 4332222 222100  0000234678999999877763 221         1224688888


Q ss_pred             ccC
Q 008927          332 ESN  334 (548)
Q Consensus       332 ~~~  334 (548)
                      +++
T Consensus       176 ~dG  178 (352)
T 2ism_A          176 PEG  178 (352)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            754

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=91.48  E-value=13  Score=37.39  Aligned_cols=145  Identities=14%  Similarity=0.041  Sum_probs=78.6

Q ss_pred             ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCC
Q 008927          153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (548)
Q Consensus       153 ~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~  232 (548)
                      |+..|+-.  .++.|+.+++... .+...+....    ....+..+.+.  .++.+..+         ..|+++|+.++.
T Consensus        96 d~~~L~v~--~~~~l~v~dv~sl-~~~~~~~~~~----~~v~~i~~~~p--~~av~~~d---------G~L~v~dl~~~~  157 (388)
T 1xip_A           96 HGDQVLVS--TRNALYSLDLEEL-SEFRTVTSFE----KPVFQLKNVNN--TLVILNSV---------NDLSALDLRTKS  157 (388)
T ss_dssp             ETTEEEEE--ESSEEEEEESSST-TCEEEEEECS----SCEEEEEECSS--EEEEEETT---------SEEEEEETTTCC
T ss_pred             CCCEEEEE--cCCcEEEEEchhh-hccCccceee----cceeeEEecCC--CEEEEECC---------CCEEEEEccCCc
Confidence            66666655  4578888887642 2222222221    12334444443  24444322         479999999887


Q ss_pred             ccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcC---------CCCCcccCC
Q 008927          233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG---------FDPTIVESP  303 (548)
Q Consensus       233 ~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~---------~~~~~~~~~  303 (548)
                         ...+..   .+...+|||+|  ++....        ...+.+++.+ +++...+..+..         ++    ..+
T Consensus       158 ---~~~~~~---~Vs~v~WSpkG--~~vg~~--------dg~i~~~~~~-~~~~~~k~~I~~Pp~~~~~~~~~----~~V  216 (388)
T 1xip_A          158 ---TKQLAQ---NVTSFDVTNSQ--LAVLLK--------DRSFQSFAWR-NGEMEKQFEFSLPSELEELPVEE----YSP  216 (388)
T ss_dssp             ---EEEEEE---SEEEEEECSSE--EEEEET--------TSCEEEEEEE-TTEEEEEEEECCCHHHHTSCTTT----SEE
T ss_pred             ---cccccC---CceEEEEcCCc--eEEEEc--------CCcEEEEcCC-CccccccceecCCcccccccCCC----eeE
Confidence               444443   35678999999  343331        2346666665 343211333421         12    457


Q ss_pred             cCceECcCCc-EEEEEeCC---CC----eeeEEEEeccCCe
Q 008927          304 TEPKWSSKGE-LFFVTDRK---NG----FWNLHKWIESNNE  336 (548)
Q Consensus       304 ~~~~wspDG~-L~~~sd~~---~g----~~~Ly~~d~~~g~  336 (548)
                      ....|.++++ ++......   +.    ...+|.++...+.
T Consensus       217 ~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~~  257 (388)
T 1xip_A          217 LSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGS  257 (388)
T ss_dssp             EEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETTE
T ss_pred             EEEEEecCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCCC
Confidence            7899999998 43333221   11    3357888744443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=91.35  E-value=4.5  Score=39.65  Aligned_cols=166  Identities=11%  Similarity=0.083  Sum_probs=85.5

Q ss_pred             ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcC----CCCCcccCCcCceE---CcCCcEEEE
Q 008927          245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG----FDPTIVESPTEPKW---SSKGELFFV  317 (548)
Q Consensus       245 ~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~----~~~~~~~~~~~~~w---spDG~L~~~  317 (548)
                      +-..++|.+...++.+..+       ....|+.++.+. +...+. .+.+    ....  .....+.|   .|+|+|+++
T Consensus        14 yPE~~~wd~~~g~~~vs~l-------~~g~V~~~~~~~-~~~~~~-~~~~~s~~g~~~--~~~sGl~~~~~D~~grL~vv   82 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNL-------YKGRIEVYNPKT-QSHFNV-VIDGASSNGDGE--QQMSGLSLLTHDNSKRLFAV   82 (334)
T ss_dssp             CCSCEEEETTTTEEEEEET-------TTTEEEEECTTT-CCEEEE-CCTTTCCSSCCS--EEEEEEEESSSSSCCEEEEE
T ss_pred             CCcCccCcCCCCEEEEEec-------cCCEEEEEcCCC-CeEEEE-ecCCccccCCCc--ceeeEEEEeccCCCCcEEEE
Confidence            3457899887666654432       246788888763 432222 2221    1101  23456789   688886665


Q ss_pred             EeCC----------CCeeeEEEEecc---CCeeEeecccc--ccc-----CCCcccccCcceeeeeecCCCCEEEEEEEe
Q 008927          318 TDRK----------NGFWNLHKWIES---NNEVLAIYSLD--AEF-----SRPLWVFGINSYEIIQSHGEKNLIACSYRQ  377 (548)
Q Consensus       318 sd~~----------~g~~~Ly~~d~~---~g~~~~l~~~~--~d~-----~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~  377 (548)
                      .+.+          .|...|+++|+.   +++........  .+.     +...  .+.......    ..+.+|++-..
T Consensus        83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~--~~~nDvavD----~~GnaYVt~s~  156 (334)
T 2p9w_A           83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRP--FGVVQSAQD----RDGNSYVAFAL  156 (334)
T ss_dssp             EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCC--EEEEEEEEC----TTSCEEEEEEE
T ss_pred             EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccc--cCCceeEEC----CCCCEEEeCCC
Confidence            5521          245679999998   66643222100  000     0000  111223332    23456655443


Q ss_pred             CCeEEEEEEECCCCceEeec--CCCc----eeEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 008927          378 NGRSYLGILDDFGHSLSLLD--IPFT----DIDNI--TLGNDCLFVEGASGVEPSSVAKVTLD  432 (548)
Q Consensus       378 ~g~~~L~~~dl~~g~~~~l~--~~~~----~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~  432 (548)
                      . ...|++++.++..+..+.  .+..    ...++  .+++..|++..+    ...|+++|+.
T Consensus       157 ~-~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~----~g~L~~fD~~  214 (334)
T 2p9w_A          157 G-MPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG----PRALTAFDVS  214 (334)
T ss_dssp             S-SCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS----SSSEEEEECS
T ss_pred             C-CCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC----CCeEEEEcCC
Confidence            3 145999998766544332  2211    12233  466766655432    5789999976

>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans}

Probab=91.19  E-value=0.42  Score=44.91  Aligned_cols=54  Identities=11%  Similarity=0.084  Sum_probs=38.8

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ||.+++...+-|.        +..-|.||++||-+....  .|...+..|+. +|.|+.+|+||-
T Consensus        10 ~g~~l~y~~~g~~--------~~~~~~vvllHG~~~~~~--~~~~~~~~L~~-~~~vi~~D~~G~   63 (266)
T 2xua_A           10 NGTELHYRIDGER--------HGNAPWIVLSNSLGTDLS--MWAPQVAALSK-HFRVLRYDTRGH   63 (266)
T ss_dssp             SSSEEEEEEESCS--------SSCCCEEEEECCTTCCGG--GGGGGHHHHHT-TSEEEEECCTTS
T ss_pred             CCEEEEEEEcCCc--------cCCCCeEEEecCccCCHH--HHHHHHHHHhc-CeEEEEecCCCC
Confidence            7888887776542        111378999999665433  46666777865 599999999983

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.09  E-value=13  Score=36.72  Aligned_cols=160  Identities=8%  Similarity=-0.012  Sum_probs=81.5

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCCCceecCCC---CCCCCceecceeeCCC---CCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPD---YGEPLVSYADGIFDPR---FNRYVTVREDRRQDALNSTTEIVAIALN  229 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~---~~~~~~~~~~~~~SpD---G~~i~~v~~~~~~~~~~~~~~l~~idl~  229 (548)
                      .|+++....++|++++.++  +..+.+...   .........+++++||   ..+|++.-...      ..+.|+++.+.
T Consensus        44 ~llVter~~G~I~~v~~~~--g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~------~~~~v~R~~~~  115 (347)
T 3das_A           44 DLLVSSRDEATITRVDAKT--GRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA------SDNRIVRMLYD  115 (347)
T ss_dssp             CEEEEETTTCEEEEECTTT--CCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS------SSEEEEEEEBC
T ss_pred             cEEEEEecCCEEEEEECCC--CcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC------CCCEEEEEEeC
Confidence            5666665478999998765  444433211   0001123456789996   44543321211      13579999887


Q ss_pred             CCC-----ccCcEEeee-cC--C--ceeeeEECCCCCEEEEEEecC-CC------CCCCCceEEEEEecCCCcee-----
Q 008927          230 GQN-----IQEPKVLVS-GS--D--FYAFPRMDPRGERMAWIEWHH-PN------MPWDKAELWVGYISENGDVY-----  287 (548)
Q Consensus       230 ~g~-----~~~~~~L~~-~~--~--~~~~p~~SPDGk~La~~~~~~-~~------~p~~~~~L~v~~~~~~g~~~-----  287 (548)
                      .+.     ....+.|.. -+  .  +-....|+|||+ |+ ++... .+      .......|+.++.+  |++.     
T Consensus       116 ~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Ly-vt~Gd~~~~~~~qd~~~~~G~IlRi~~d--G~ip~~nPf  191 (347)
T 3das_A          116 EKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LY-AGTGESGDTGLSQDRKSLGGKILRMTPD--GEPAPGNPF  191 (347)
T ss_dssp             TTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EE-EECBCTTCGGGTTCTTCSTTCEEEECTT--SSBCTTCSS
T ss_pred             CCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EE-EEECCCCCCccccCCCCCCCEEEEEeCC--CCccCCCCC
Confidence            631     111333322 11  1  224578999996 54 44221 11      00124567777765  3210     


Q ss_pred             -eeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEe
Q 008927          288 -KRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWI  331 (548)
Q Consensus       288 -~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d  331 (548)
                       ...+.+.+-    .....+.|.|+|+||+......+...|.++.
T Consensus       192 ~~~~i~a~G~----RNp~Gla~dp~G~L~~~d~g~~~~deln~i~  232 (347)
T 3das_A          192 PGSPVYSYGH----RNVQGLAWDDKQRLFASEFGQDTWDELNAIK  232 (347)
T ss_dssp             TTCCEEEBCC----SBCCEEEECTTCCEEEEECCSSSCEEEEEEC
T ss_pred             CCCeEEeeCC----CCcceEEECCCCCEEEEecCCCCCceeeEEc
Confidence             012233222    3456789999988876643223445566653

>1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13

Probab=90.89  E-value=0.12  Score=49.65  Aligned_cols=40  Identities=13%  Similarity=0.070  Sum_probs=32.9

Q ss_pred             CCcEEEEEccCccccccCccChHHHHHHhc--CcEEEEeCCCCC
Q 008927          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYGGS  535 (548)
Q Consensus       494 ~~Pliv~iHGGP~~~~~~~~~~~~Q~~asr--GyaVl~~NyRGS  535 (548)
                      ..|.||++||.+....  .|....+.|+++  ||.|+.+|+||.
T Consensus        35 ~~~~vvllHG~~~~~~--~~~~~~~~L~~~~~g~~vi~~D~~G~   76 (302)
T 1pja_A           35 SYKPVIVVHGLFDSSY--SFRHLLEYINETHPGTVVTVLDLFDG   76 (302)
T ss_dssp             CCCCEEEECCTTCCGG--GGHHHHHHHHHHSTTCCEEECCSSCS
T ss_pred             CCCeEEEECCCCCChh--HHHHHHHHHHhcCCCcEEEEeccCCC
Confidence            3477899999876543  477788899999  999999999986

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=90.72  E-value=5.3  Score=39.45  Aligned_cols=88  Identities=13%  Similarity=-0.001  Sum_probs=43.9

Q ss_pred             cEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCC---CCcccCCcCceECcC-
Q 008927          236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD---PTIVESPTEPKWSSK-  311 (548)
Q Consensus       236 ~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~---~~~~~~~~~~~wspD-  311 (548)
                      .+++..+-..-....|.|||++|. +...       ..+|++++.+  |....  .+.+..   ..-......+.++|| 
T Consensus        10 ~~~va~~l~~P~~i~~~pdG~~l~-V~e~-------~G~i~~~~~~--g~~~~--~~~~~~~v~~~g~~g~~gia~~pdf   77 (353)
T 2g8s_A           10 VEVLQDKLDHPWALAFLPDNHGML-ITLR-------GGELRHWQAG--KGLSA--PLSGVPDVWAHGQGGLLDVVLAPDF   77 (353)
T ss_dssp             EEEEEEEESSEEEEEECSTTCCEE-EEET-------TTEEEEEETT--TEECC--CCBSCCCCCCSTTCSEEEEEECTTH
T ss_pred             EEEEECCCCCcEEEEEcCCCCEEE-EEeC-------CceEEEEeCC--Cceee--EecCCcccccCCCCCceeEEECCCC
Confidence            344444333334567999998654 4422       2478888743  43211  111100   000023356789996 


Q ss_pred             ---CcEEEEE-eCC-CC--eeeEEEEeccCC
Q 008927          312 ---GELFFVT-DRK-NG--FWNLHKWIESNN  335 (548)
Q Consensus       312 ---G~L~~~s-d~~-~g--~~~Ly~~d~~~g  335 (548)
                         |.||+.. ... .|  ...|++++++.+
T Consensus        78 ~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~  108 (353)
T 2g8s_A           78 AQSRRIWLSYSEVGDDGKAGTAVGYGRLSDD  108 (353)
T ss_dssp             HHHCEEEEEEEEECSSSCEEEEEEEEEECTT
T ss_pred             CCCCEEEEEEeCCCCCCCceeEEEEEEECCC
Confidence               4466552 211 22  457888877543

>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis}

Probab=90.66  E-value=0.14  Score=50.68  Aligned_cols=67  Identities=10%  Similarity=0.080  Sum_probs=44.3

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHh------cCcEEEEeCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS------RGWAFVDVNY  532 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~as------rGyaVl~~Ny  532 (548)
                      ..+.+++.|..-|.+...++|.|.+  |++ +.++||+|++.||+-.  +. ......+.++.      .+++|+.+++
T Consensus        11 ~v~~~~~~S~~l~~~r~~~VylP~~--y~~-~~~~yPVlylldG~~~--f~-~~~~~~~~l~~~~~~~~~~~IvV~i~~   83 (331)
T 3gff_A           11 EYQSKRLESRLLKETREYVIALPEG--YAQ-SLEAYPVVYLLDGEDQ--FD-HMASLLQFLSQGTMPQIPKVIIVGIHN   83 (331)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECCTT--GGG-SCCCEEEEEESSHHHH--HH-HHHHHHHHHTCSSSCSSCCCEEEEECC
T ss_pred             eEEEEEEEecCCCCeEEEEEEeCCC--CCC-CCCCccEEEEecChhh--hH-HHHHHHHHHHhhhhcCCCCEEEEEECC
Confidence            3467778775358889999999964  653 2688999999999521  11 01112344443      3789998865

>2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A

Probab=90.65  E-value=0.31  Score=45.93  Aligned_cols=50  Identities=18%  Similarity=0.114  Sum_probs=36.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +|.+++-..+-+            -|.||++||.+....  .|...++.|++ +|.|+.+|+||.
T Consensus        16 ~g~~l~~~~~g~------------~~~vv~lHG~~~~~~--~~~~~~~~l~~-~~~vi~~D~~G~   65 (297)
T 2qvb_A           16 AGKRMAYIDEGK------------GDAIVFQHGNPTSSY--LWRNIMPHLEG-LGRLVACDLIGM   65 (297)
T ss_dssp             TTEEEEEEEESS------------SSEEEEECCTTCCGG--GGTTTGGGGTT-SSEEEEECCTTS
T ss_pred             CCEEEEEEecCC------------CCeEEEECCCCchHH--HHHHHHHHHhh-cCeEEEEcCCCC
Confidence            788877555421            288999999987654  35555666765 499999999984

>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei}

Probab=90.60  E-value=0.18  Score=49.83  Aligned_cols=46  Identities=17%  Similarity=0.154  Sum_probs=29.4

Q ss_pred             CCcEEEEEccCccccccC-ccChHHHHHHhcCcEEEEeCCCCC-CCCCh
Q 008927          494 KPPLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNYGGS-TGLSS  540 (548)
Q Consensus       494 ~~Pliv~iHGGP~~~~~~-~~~~~~Q~~asrGyaVl~~NyRGS-tGyG~  540 (548)
                      ..|+||++||-..+.... .|....+.| ++||.|+.+|.|.. .|||+
T Consensus        37 ~~~~vvllHG~~~~~~~~~~~~~l~~~L-~~g~~Vi~~Dl~~D~~G~G~   84 (335)
T 2q0x_A           37 ARRCVLWVGGQTESLLSFDYFTNLAEEL-QGDWAFVQVEVPSGKIGSGP   84 (335)
T ss_dssp             SSSEEEEECCTTCCTTCSTTHHHHHHHH-TTTCEEEEECCGGGBTTSCS
T ss_pred             CCcEEEEECCCCccccchhHHHHHHHHH-HCCcEEEEEeccCCCCCCCC
Confidence            347889999965433222 233455666 78999999976432 45664

>4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A*

Probab=90.36  E-value=0.1  Score=50.51  Aligned_cols=63  Identities=21%  Similarity=0.157  Sum_probs=39.9

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEcc-CccccccCccChHHHHHHhc--CcEEEEeCC---CCCCCCChhh
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG-GPTSEARGILNLSIQYWTSR--GWAFVDVNY---GGSTGLSSVP  542 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHG-GP~~~~~~~~~~~~Q~~asr--GyaVl~~Ny---RGStGyG~~f  542 (548)
                      .+.....|...|..      +++++||||+.|| |-.   ...|....+.|+.+  ++.|+.||-   ....|+|+.|
T Consensus        48 ~~~~~l~y~~~p~~------~~~~~plVI~LHG~G~~---~~~~~~~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G~~W  116 (285)
T 4fhz_A           48 IMTRKLTFGRRGAA------PGEATSLVVFLHGYGAD---GADLLGLAEPLAPHLPGTAFVAPDAPEPCRANGFGFQW  116 (285)
T ss_dssp             CCCCCCCEEEEESC------TTCCSEEEEEECCTTBC---HHHHHTTHHHHGGGSTTEEEEEECCSEECTTSSSCEES
T ss_pred             cccccceeecCCCC------CCCCCcEEEEEcCCCCC---HHHHHHHHHHHHHhCCCeEEEecCCCcccccCCCcccc
Confidence            44445556666643      3678999999999 422   22344456777765  999999872   2334566554

>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E

Probab=90.35  E-value=0.19  Score=49.43  Aligned_cols=43  Identities=14%  Similarity=0.041  Sum_probs=34.1

Q ss_pred             CCcEEEEEccCcccccc----CccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          494 KPPLLVKSHGGPTSEAR----GILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       494 ~~Pliv~iHGGP~~~~~----~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      ..|.||++||.......    ..|....+.|+.+||.|+.+|++|..
T Consensus         7 ~~~~vVlvHG~~~~~~~~~~~~~w~~l~~~L~~~G~~V~~~d~~g~g   53 (320)
T 1ys1_X            7 TRYPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQ   53 (320)
T ss_dssp             CSSCEEEECCTTCCSEETTTEESSTTHHHHHHHTTCCEEECCCCSSC
T ss_pred             CCCEEEEECCCCCCccccchHHHHHHHHHHHHhCCCEEEEEcCCCCC
Confidence            44779999998765422    45677889999999999999999753

>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14

Probab=90.30  E-value=0.19  Score=45.82  Aligned_cols=40  Identities=23%  Similarity=0.109  Sum_probs=30.2

Q ss_pred             CCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEe--CCCCC
Q 008927          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV--NYGGS  535 (548)
Q Consensus       493 ~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~--NyRGS  535 (548)
                      ++.|+||++||++...  ..|....+.|+. ||.|+.+  +.||.
T Consensus        36 ~~~~~vv~~HG~~~~~--~~~~~~~~~l~~-g~~v~~~~~d~~g~   77 (226)
T 2h1i_A           36 TSKPVLLLLHGTGGNE--LDLLPLAEIVDS-EASVLSVRGNVLEN   77 (226)
T ss_dssp             TTSCEEEEECCTTCCT--TTTHHHHHHHHT-TSCEEEECCSEEET
T ss_pred             CCCcEEEEEecCCCCh--hHHHHHHHHhcc-CceEEEecCcccCC
Confidence            4579999999998543  345566677887 9999999  66653

>3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A*

Probab=90.20  E-value=0.49  Score=45.95  Aligned_cols=52  Identities=17%  Similarity=0.161  Sum_probs=37.1

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +|..++-...-+         +. .|.||++||.|.+..  .|...+..|+.+ |-|+.+|.||-
T Consensus        15 ~g~~l~y~~~G~---------g~-~~pvvllHG~~~~~~--~w~~~~~~L~~~-~~via~Dl~G~   66 (316)
T 3afi_E           15 LGSSMAYRETGA---------QD-APVVLFLHGNPTSSH--IWRNILPLVSPV-AHCIAPDLIGF   66 (316)
T ss_dssp             TTEEEEEEEESC---------TT-SCEEEEECCTTCCGG--GGTTTHHHHTTT-SEEEEECCTTS
T ss_pred             CCEEEEEEEeCC---------CC-CCeEEEECCCCCchH--HHHHHHHHHhhC-CEEEEECCCCC
Confidence            687776555422         21 257999999997654  466667778755 99999999984

>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A

Probab=90.19  E-value=0.15  Score=48.71  Aligned_cols=39  Identities=13%  Similarity=0.244  Sum_probs=30.0

Q ss_pred             cEEEEEccC-ccccccCccChHH-HHHHhcCcEEEEeCCCCC
Q 008927          496 PLLVKSHGG-PTSEARGILNLSI-QYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       496 Pliv~iHGG-P~~~~~~~~~~~~-Q~~asrGyaVl~~NyRGS  535 (548)
                      |.||++||. |.+.....|...+ ..|+.+ |.|+.+|+||-
T Consensus        34 ~~vvllHG~~~~~~~~~~w~~~~~~~L~~~-~~vi~~D~~G~   74 (286)
T 2puj_A           34 ETVIMLHGGGPGAGGWSNYYRNVGPFVDAG-YRVILKDSPGF   74 (286)
T ss_dssp             SEEEEECCCSTTCCHHHHHTTTHHHHHHTT-CEEEEECCTTS
T ss_pred             CcEEEECCCCCCCCcHHHHHHHHHHHHhcc-CEEEEECCCCC
Confidence            679999997 6544444566667 778766 99999999983

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=90.15  E-value=16  Score=36.20  Aligned_cols=195  Identities=14%  Similarity=0.126  Sum_probs=94.5

Q ss_pred             cceeeCCCCCEEEEEEeccCCC-----CCCceeEEEEEECCC--CCccCcEEeee-c--C---Cce-eeeEE--CCCCCE
Q 008927          194 ADGIFDPRFNRYVTVREDRRQD-----ALNSTTEIVAIALNG--QNIQEPKVLVS-G--S---DFY-AFPRM--DPRGER  257 (548)
Q Consensus       194 ~~~~~SpDG~~i~~v~~~~~~~-----~~~~~~~l~~idl~~--g~~~~~~~L~~-~--~---~~~-~~p~~--SPDGk~  257 (548)
                      .|+...|+|  ++|++......     ..+....|+++|+++  ++   .+.|.. +  .   +|. -...+  ..||+.
T Consensus        53 EDi~~~~~G--~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~---~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~  127 (355)
T 3sre_A           53 EDLEILPNG--LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA---VSELEIIGNTLDISSFNPHGISTFIDDDNTV  127 (355)
T ss_dssp             CEEEECTTS--EEEEEECCC-----------CCEEEEEETTSSSCC---EEECEEECSSCCGGGCCEEEEEEEECTTCCE
T ss_pred             ceeEEcCCC--eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc---eEEEEccCCCCCcCceeeeeeEEEECCCCcE
Confidence            355677876  34554321100     001356899999984  34   444432 2  1   121 11122  246774


Q ss_pred             EEEEEecCCCCCCCCceEEEEEecCCCc-eeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeC--------------CC
Q 008927          258 MAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR--------------KN  322 (548)
Q Consensus       258 La~~~~~~~~~p~~~~~L~v~~~~~~g~-~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~--------------~~  322 (548)
                      -.|+. +|+.   ..+.+-+++++.++. ..-...+.+..   ..+.......+||++|+..+.              +.
T Consensus       128 ~L~Vv-nh~~---~~s~ielf~~d~~~~~~~~~~~~~g~~---~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~  200 (355)
T 3sre_A          128 YLLVV-NHPG---SSSTVEVFKFQEEEKSLLHLKTIRHKL---LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL  200 (355)
T ss_dssp             EEEEE-ECST---TCCEEEEEEEETTTTEEEEEEEECCTT---CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTC
T ss_pred             EEEEE-ECCC---CCCeEEEEEEECCCCEEEEEeccccCC---CCCCceEEEeCCCCEEecCCcEeCCcccccchhhccC
Confidence            44565 4442   234444444443333 21122233322   134566788899988776542              12


Q ss_pred             CeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECC-CCceE---eecC
Q 008927          323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-GHSLS---LLDI  398 (548)
Q Consensus       323 g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~-~g~~~---~l~~  398 (548)
                      ....||+++.  ++.+.+..   ++..|      +..+++|   |++.||++-.  ...+|++++++ +|++.   .+..
T Consensus       201 ~~g~vyr~d~--~~~~~~~~---~l~~p------NGia~sp---Dg~~lYvadt--~~~~I~~~~~~~~g~l~~~~~~~~  264 (355)
T 3sre_A          201 AWSFVTYYSP--NDVRVVAE---GFDFA------NGINISP---DGKYVYIAEL--LAHKIHVYEKHANWTLTPLRVLSF  264 (355)
T ss_dssp             CCEEEEEECT--TCCEEEEE---EESSE------EEEEECT---TSSEEEEEEG--GGTEEEEEEECTTSCEEEEEEEEC
T ss_pred             CccEEEEEEC--CeEEEeec---CCccc------CcceECC---CCCEEEEEeC--CCCeEEEEEECCCCcEecCEEEeC
Confidence            4567999987  35554432   11111      2355665   7788887543  33467777764 34433   2222


Q ss_pred             CCceeEeeeec--CCEEEEEE
Q 008927          399 PFTDIDNITLG--NDCLFVEG  417 (548)
Q Consensus       399 ~~~~~~~~s~d--~~~l~~~~  417 (548)
                      + ....++..|  ++.+++.+
T Consensus       265 ~-g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          265 D-TLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             S-SEEEEEEECTTTCCEEEEE
T ss_pred             C-CCCceEEEeCCCCcEEEEe
Confidence            1 223445443  25566644

>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A*

Probab=90.06  E-value=0.28  Score=48.22  Aligned_cols=58  Identities=10%  Similarity=-0.087  Sum_probs=40.2

Q ss_pred             CeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccC-hHHHHHHhcCcEEEEeCCCCC
Q 008927          472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       472 G~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~-~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +..+.+.|+.|.+  +.  .+. .+.||++||....... .|. ...++|+++||.|+.+|+||.
T Consensus        13 ~~~l~~~i~~p~~--~~--~~~-~~~VvllHG~~~~~~~-~~~~~l~~~L~~~G~~v~~~d~~g~   71 (317)
T 1tca_A           13 KSVLDAGLTCQGA--SP--SSV-SKPILLVPGTGTTGPQ-SFDSNWIPLSTQLGYTPCWISPPPF   71 (317)
T ss_dssp             HHHHHHTEEETTB--CT--TSC-SSEEEEECCTTCCHHH-HHTTTHHHHHHTTTCEEEEECCTTT
T ss_pred             HHHHhheeeCCCC--CC--CCC-CCeEEEECCCCCCcch-hhHHHHHHHHHhCCCEEEEECCCCC
Confidence            4446666777753  32  123 3568999998765432 254 667889999999999999984

>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A

Probab=89.99  E-value=0.32  Score=45.99  Aligned_cols=55  Identities=16%  Similarity=0.192  Sum_probs=37.8

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccc---cCccCh-HHHHHHhcCcEEEEeCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA---RGILNL-SIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~---~~~~~~-~~Q~~asrGyaVl~~NyRG  534 (548)
                      +|.+++-...-+.        ....|+||++||.+....   ...|.. ..+.|+. +|.|+.+|+||
T Consensus        19 ~~~~l~y~~~G~~--------~~~~p~vvllHG~~~~~~~~~~~~~~~~~~~~L~~-~~~vi~~D~~G   77 (286)
T 2qmq_A           19 PYGSVTFTVYGTP--------KPKRPAIFTYHDVGLNYKSCFQPLFRFGDMQEIIQ-NFVRVHVDAPG   77 (286)
T ss_dssp             TTEEEEEEEESCC--------CTTCCEEEEECCTTCCHHHHHHHHHTSHHHHHHHT-TSCEEEEECTT
T ss_pred             CCeEEEEEeccCC--------CCCCCeEEEeCCCCCCchhhhhhhhhhchhHHHhc-CCCEEEecCCC
Confidence            6888877665431        113488999999987653   222432 5566765 69999999999

>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A*

Probab=89.93  E-value=0.49  Score=45.00  Aligned_cols=52  Identities=13%  Similarity=0.100  Sum_probs=36.1

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      +|.+++.....+         |...|.||++||.+....  .|...+..|+ ++|-|+.+|.||
T Consensus        12 ~g~~l~y~~~~~---------G~~~p~vvllHG~~~~~~--~w~~~~~~L~-~~~rvia~DlrG   63 (276)
T 2wj6_A           12 FDNKLSYIDNQR---------DTDGPAILLLPGWCHDHR--VYKYLIQELD-ADFRVIVPNWRG   63 (276)
T ss_dssp             TTEEEEEEECCC---------CCSSCEEEEECCTTCCGG--GGHHHHHHHT-TTSCEEEECCTT
T ss_pred             CCeEEEEEEecC---------CCCCCeEEEECCCCCcHH--HHHHHHHHHh-cCCEEEEeCCCC
Confidence            788776544321         112378999999886543  4556666776 579999999998

>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans}

Probab=89.80  E-value=0.21  Score=47.43  Aligned_cols=38  Identities=18%  Similarity=0.155  Sum_probs=26.8

Q ss_pred             cEEEEEcc-CccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          496 PLLVKSHG-GPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       496 Pliv~iHG-GP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      |+||++|| |..+ ....|......|+ +||.|+.+|+||-
T Consensus        42 p~vv~lHG~G~~~-~~~~~~~~~~~L~-~~~~vi~~D~~G~   80 (292)
T 3l80_A           42 PCFVFLSGAGFFS-TADNFANIIDKLP-DSIGILTIDAPNS   80 (292)
T ss_dssp             SEEEEECCSSSCC-HHHHTHHHHTTSC-TTSEEEEECCTTS
T ss_pred             CEEEEEcCCCCCc-HHHHHHHHHHHHh-hcCeEEEEcCCCC
Confidence            89999997 4322 2224555555565 7999999999983

>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni}

Probab=89.65  E-value=0.1  Score=48.65  Aligned_cols=38  Identities=11%  Similarity=0.101  Sum_probs=28.6

Q ss_pred             cEEEEEccCccccccCccChHHHHHHh-cCcEEEEeCCCCC
Q 008927          496 PLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGS  535 (548)
Q Consensus       496 Pliv~iHGGP~~~~~~~~~~~~Q~~as-rGyaVl~~NyRGS  535 (548)
                      |.||++||.+....  .|......|+. +||.|+.+|+||-
T Consensus        22 ~~vv~lhG~~~~~~--~~~~~~~~l~~~~g~~v~~~d~~G~   60 (272)
T 3fsg_A           22 TPIIFLHGLSLDKQ--STCLFFEPLSNVGQYQRIYLDLPGM   60 (272)
T ss_dssp             SEEEEECCTTCCHH--HHHHHHTTSTTSTTSEEEEECCTTS
T ss_pred             CeEEEEeCCCCcHH--HHHHHHHHHhccCceEEEEecCCCC
Confidence            67899999876543  24444555776 7999999999983

>3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A*

Probab=89.56  E-value=0.26  Score=45.85  Aligned_cols=39  Identities=15%  Similarity=0.078  Sum_probs=29.7

Q ss_pred             CCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCC
Q 008927          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       493 ~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      ...|.||++||++..  ...|......|+.+ |.|+.+|+||
T Consensus        18 ~~~~~vv~~HG~~~~--~~~~~~~~~~l~~~-~~v~~~d~~G   56 (267)
T 3fla_A           18 DARARLVCLPHAGGS--ASFFFPLAKALAPA-VEVLAVQYPG   56 (267)
T ss_dssp             TCSEEEEEECCTTCC--GGGGHHHHHHHTTT-EEEEEECCTT
T ss_pred             CCCceEEEeCCCCCC--chhHHHHHHHhccC-cEEEEecCCC
Confidence            456999999999764  33455666677655 9999999997

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=89.42  E-value=0.66  Score=46.39  Aligned_cols=134  Identities=11%  Similarity=-0.006  Sum_probs=51.0

Q ss_pred             eEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (548)
Q Consensus       221 ~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~  300 (548)
                      ..|+.+|+.+|+   ...-.........| +.+||+.++ .. .      ....|+.+|.++ |+.  ..........  
T Consensus        19 g~v~a~d~~tG~---~~W~~~~~~~~s~p-~~~~g~~~v-~~-s------~dg~l~a~d~~t-G~~--~w~~~~~~~~--   81 (369)
T 2hz6_A           19 GSLHAVSKRTGS---IKWTLKEDPVLQVP-THVEEPAFL-PD-P------NDGSLYTLGSKN-NEG--LTKLPFTIPE--   81 (369)
T ss_dssp             SEEEEEETTTCC---EEEEEECCCSCCCC------CCEE-EC-T------TTCCEEEC------CC--SEECSCCHHH--
T ss_pred             CEEEEEECCCCC---EEEEecCCCceecc-eEcCCCEEE-Ee-C------CCCEEEEEECCC-Cce--eeeeeccCcc--
Confidence            379999999997   43323332233444 345665433 32 1      135699998863 541  1111111000  


Q ss_pred             cCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCe
Q 008927          301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR  380 (548)
Q Consensus       301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~  380 (548)
                      .....|..+.|+.+|+.+..    ..|+.+|+++|+...-.....      .      ....|   +++.|++...   .
T Consensus        82 ~~~~sp~~~~~~~v~~g~~d----g~v~a~D~~tG~~~w~~~~~~------~------~~~~p---~~~~v~~~~~---d  139 (369)
T 2hz6_A           82 LVQASPCRSSDGILYMGKKQ----DIWYVIDLLTGEKQQTLSSAF------A------DSLSP---STSLLYLGRT---E  139 (369)
T ss_dssp             HHTTCSCC-----CCCCEEE----EEEEEECCC-------------------------------------EEEEEE---E
T ss_pred             ccccCceEecCCEEEEEeCC----CEEEEEECCCCcEEEEecCCC------c------ccccc---cCCEEEEEec---C
Confidence            11223433334445443322    369999998887643221100      0      01122   4556665432   2


Q ss_pred             EEEEEEECCCCce
Q 008927          381 SYLGILDDFGHSL  393 (548)
Q Consensus       381 ~~L~~~dl~~g~~  393 (548)
                      ..|+.+|.++|+.
T Consensus       140 g~v~a~d~~tG~~  152 (369)
T 2hz6_A          140 YTITMYDTKTREL  152 (369)
T ss_dssp             EEEECCCSSSSSC
T ss_pred             CEEEEEECCCCCE
Confidence            5688999988864

>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P

Probab=89.25  E-value=0.32  Score=47.20  Aligned_cols=38  Identities=21%  Similarity=0.221  Sum_probs=29.6

Q ss_pred             cEEEEEccCccccccCccChHHHHHHh-cCcEEEEeCCCCC
Q 008927          496 PLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGS  535 (548)
Q Consensus       496 Pliv~iHGGP~~~~~~~~~~~~Q~~as-rGyaVl~~NyRGS  535 (548)
                      |.||++||++.+..  .|...+..|+. .+|.|+.+|+||-
T Consensus        39 p~lvllHG~~~~~~--~w~~~~~~L~~~~~~~via~Dl~Gh   77 (316)
T 3c5v_A           39 PVLLLLHGGGHSAL--SWAVFTAAIISRVQCRIVALDLRSH   77 (316)
T ss_dssp             CEEEEECCTTCCGG--GGHHHHHHHHTTBCCEEEEECCTTS
T ss_pred             cEEEEECCCCcccc--cHHHHHHHHhhcCCeEEEEecCCCC
Confidence            78999999875443  45566677876 3999999999984

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=88.96  E-value=27  Score=37.23  Aligned_cols=80  Identities=14%  Similarity=0.062  Sum_probs=40.3

Q ss_pred             eeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eecCCCcee
Q 008927          325 WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTDI  403 (548)
Q Consensus       325 ~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~~~~~~~  403 (548)
                      ..|+.+|+.+|++.--.+.    ..+.|. +  ...-     .++.+++ ...+  ..|+.+|.++|++. +...+...+
T Consensus       453 G~l~A~D~~tG~~~W~~~~----~~~~~~-g--~~~t-----agg~vf~-gt~d--g~l~A~D~~tG~~lW~~~l~~g~~  517 (599)
T 1w6s_A          453 GQIKAYNAITGDYKWEKME----RFAVWG-G--TMAT-----AGDLVFY-GTLD--GYLKARDSDTGDLLWKFKIPSGAI  517 (599)
T ss_dssp             EEEEEECTTTCCEEEEEEE----SSCCCS-B--CEEE-----TTTEEEE-ECTT--SEEEEEETTTCCEEEEEECSSCCC
T ss_pred             CeEEEEECCCCCEEeEecC----CCCccC-c--ceEe-----cCCEEEE-ECCC--CeEEEEECCCCCEEEEeeCCCCcE
Confidence            4677888877775432221    112221 0  0111     4555544 4333  46899999999754 333333222


Q ss_pred             -Eee--eecCCEEEEEEec
Q 008927          404 -DNI--TLGNDCLFVEGAS  419 (548)
Q Consensus       404 -~~~--s~d~~~l~~~~ss  419 (548)
                       .++  ..+++.++.+.+.
T Consensus       518 ~~P~~y~~~G~qyv~~~~G  536 (599)
T 1w6s_A          518 GYPMTYTHKGTQYVAIYYG  536 (599)
T ss_dssp             SCCEEEEETTEEEEEEEEC
T ss_pred             eccEEEEeCCEEEEEEEcc
Confidence             233  3566655555554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=88.96  E-value=16  Score=34.78  Aligned_cols=201  Identities=7%  Similarity=-0.110  Sum_probs=97.7

Q ss_pred             eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC-
Q 008927          166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD-  244 (548)
Q Consensus       166 ~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~-  244 (548)
                      .+|++++..  .+-+.+.+..   ..|...-...-++ .|+.+-...........++++++|+.+.+   -+.+...+. 
T Consensus        68 ~~~~~d~~~--~~W~~~~~~p---~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~~---W~~~~~~p~~  138 (315)
T 4asc_A           68 YFLQFDHLD--SEWLGMPPLP---SPRCLFGLGEALN-SIYVVGGREIKDGERCLDSVMCYDRLSFK---WGESDPLPYV  138 (315)
T ss_dssp             EEEEEETTT--TEEEECCCBS---SCEESCEEEEETT-EEEEECCEESSTTCCBCCCEEEEETTTTE---EEECCCCSSC
T ss_pred             ceEEecCCC--CeEEECCCCC---cchhceeEEEECC-EEEEEeCCcCCCCCcccceEEEECCCCCc---EeECCCCCCc
Confidence            489999886  5556665542   1232221112244 44433211100112345789999999886   455543221 


Q ss_pred             ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeC-CCC
Q 008927          245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR-KNG  323 (548)
Q Consensus       245 ~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~-~~g  323 (548)
                      ........-+++ |..+.-...+. -...+++++|... .++.   .+...+ .  .........-+++||++.-. ..+
T Consensus       139 r~~~~~~~~~~~-iyv~GG~~~~~-~~~~~~~~yd~~~-~~W~---~~~~~p-~--~r~~~~~~~~~~~iyv~GG~~~~~  209 (315)
T 4asc_A          139 VYGHTVLSHMDL-VYVIGGKGSDR-KCLNKMCVYDPKK-FEWK---ELAPMQ-T--ARSLFGATVHDGRIIVAAGVTDTG  209 (315)
T ss_dssp             CBSCEEEEETTE-EEEECCBCTTS-CBCCCEEEEETTT-TEEE---ECCCCS-S--CCBSCEEEEETTEEEEEEEECSSS
T ss_pred             ccceeEEEECCE-EEEEeCCCCCC-cccceEEEEeCCC-CeEE---ECCCCC-C--chhceEEEEECCEEEEEeccCCCC
Confidence            111112223454 44333110110 1245799999874 4432   333221 0  11111222346777777422 122


Q ss_pred             -eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC------------CeEEEEEEECCC
Q 008927          324 -FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN------------GRSYLGILDDFG  390 (548)
Q Consensus       324 -~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~------------g~~~L~~~dl~~  390 (548)
                       ...++.+|+++++.+.+.+..    .+...   ......     ++.||+..-.+            ....++++|+++
T Consensus       210 ~~~~~~~yd~~~~~W~~~~~~p----~~r~~---~~~~~~-----~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~  277 (315)
T 4asc_A          210 LTSSAEVYSITDNKWAPFEAFP----QERSS---LSLVSL-----VGTLYAIGGFATLETESGELVPTELNDIWRYNEEE  277 (315)
T ss_dssp             EEEEEEEEETTTTEEEEECCCS----SCCBS---CEEEEE-----TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTT
T ss_pred             ccceEEEEECCCCeEEECCCCC----Ccccc---eeEEEE-----CCEEEEECCccccCcCCccccccccCcEEEecCCC
Confidence             346999999999888775321    11111   011222     34555443221            135688999998


Q ss_pred             CceEee
Q 008927          391 HSLSLL  396 (548)
Q Consensus       391 g~~~~l  396 (548)
                      ++++.+
T Consensus       278 ~~W~~~  283 (315)
T 4asc_A          278 KKWEGV  283 (315)
T ss_dssp             TEEEEE
T ss_pred             Chhhhh
Confidence            888877

>3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A

Probab=88.42  E-value=0.082  Score=50.27  Aligned_cols=37  Identities=19%  Similarity=0.254  Sum_probs=30.1

Q ss_pred             cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      |.||++||.+.+..  .|...++.|+ +||.|+.+|+||-
T Consensus        26 p~vv~lHG~~~~~~--~~~~~~~~l~-~g~~v~~~D~~G~   62 (304)
T 3b12_A           26 PALLLLHGFPQNLH--MWARVAPLLA-NEYTVVCADLRGY   62 (304)
Confidence            77999999986543  4666677787 8999999999983

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=88.67  E-value=13  Score=38.18  Aligned_cols=88  Identities=8%  Similarity=0.012  Sum_probs=45.6

Q ss_pred             cEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCC----CCcccCCcCceECcC
Q 008927          236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD----PTIVESPTEPKWSSK  311 (548)
Q Consensus       236 ~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~----~~~~~~~~~~~wspD  311 (548)
                      .+++.++-..-...+|.|||+ |. +...      ...+|++++.. +|.......+....    ..  .....++|+||
T Consensus        19 ~~~~a~~l~~P~~~a~~pdG~-l~-V~e~------~gg~I~~~~~~-~g~~~~~~~~~~~~~~~~g~--~Gllgia~~Pd   87 (454)
T 1cru_A           19 KKVILSNLNKPHALLWGPDNQ-IW-LTER------ATGKILRVNPE-SGSVKTVFQVPEIVNDADGQ--NGLLGFAFHPD   87 (454)
T ss_dssp             EEEEECCCSSEEEEEECTTSC-EE-EEET------TTCEEEEECTT-TCCEEEEEECTTCCCCTTSS--CSEEEEEECTT
T ss_pred             EEEEECCCCCceEEEEcCCCc-EE-EEEc------CCCEEEEEECC-CCcEeEEecCCccccccCCC--CceeEEEECCC
Confidence            445555444445678999998 33 4322      13468888754 35432222222110    01  23346789995


Q ss_pred             ----CcEEEEEeC------CC---CeeeEEEEeccC
Q 008927          312 ----GELFFVTDR------KN---GFWNLHKWIESN  334 (548)
Q Consensus       312 ----G~L~~~sd~------~~---g~~~Ly~~d~~~  334 (548)
                          |.||+....      +.   ....|++++.+.
T Consensus        88 f~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~  123 (454)
T 1cru_A           88 FKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNK  123 (454)
T ss_dssp             TTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEET
T ss_pred             cCcCCEEEEEEeccccCCCccccccccEEEEEEECC
Confidence                446665321      00   145788888654

>1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A

Probab=88.64  E-value=0.56  Score=44.37  Aligned_cols=50  Identities=14%  Similarity=0.110  Sum_probs=36.2

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ||.+++-..+-+            -|.||++||.+....  .|......|+++ |.|+.+|+||-
T Consensus        17 ~g~~l~~~~~g~------------~~~vv~lHG~~~~~~--~~~~~~~~L~~~-~~vi~~D~~G~   66 (302)
T 1mj5_A           17 KGRRMAYIDEGT------------GDPILFQHGNPTSSY--LWRNIMPHCAGL-GRLIACDLIGM   66 (302)
T ss_dssp             TTEEEEEEEESC------------SSEEEEECCTTCCGG--GGTTTGGGGTTS-SEEEEECCTTS
T ss_pred             CCEEEEEEEcCC------------CCEEEEECCCCCchh--hhHHHHHHhccC-CeEEEEcCCCC
Confidence            888877554321            278999999987554  355555667665 89999999983

>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14

Probab=88.59  E-value=0.15  Score=47.46  Aligned_cols=42  Identities=14%  Similarity=0.035  Sum_probs=29.9

Q ss_pred             CCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEe--CCCCCCC
Q 008927          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV--NYGGSTG  537 (548)
Q Consensus       493 ~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~--NyRGStG  537 (548)
                      ++.|+||++||+.....  .|....+.|+. +|.|+.+  ++||..+
T Consensus        60 ~~~p~vv~~HG~~~~~~--~~~~~~~~l~~-~~~v~~~~~d~~g~g~  103 (251)
T 2r8b_A           60 AGAPLFVLLHGTGGDEN--QFFDFGARLLP-QATILSPVGDVSEHGA  103 (251)
T ss_dssp             TTSCEEEEECCTTCCHH--HHHHHHHHHST-TSEEEEECCSEEETTE
T ss_pred             CCCcEEEEEeCCCCCHh--HHHHHHHhcCC-CceEEEecCCcCCCCC
Confidence            45699999999875433  34555667766 5999999  6666543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=88.53  E-value=17  Score=34.61  Aligned_cols=190  Identities=9%  Similarity=0.016  Sum_probs=98.1

Q ss_pred             eEEEEEECCCCCccCcEEeeecCC---ceeeeEECCCCCEEEEEE-ecCCCCCCCCceEEEEEecCCCceeeeEEEcCCC
Q 008927          221 TEIVAIALNGQNIQEPKVLVSGSD---FYAFPRMDPRGERMAWIE-WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD  296 (548)
Q Consensus       221 ~~l~~idl~~g~~~~~~~L~~~~~---~~~~p~~SPDGk~La~~~-~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~  296 (548)
                      .+++++|+.+++   -+.+...+.   ......+  +++ |..+. .+.... -....++++|... .++   ..+...+
T Consensus        78 ~~~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~-~~~~~~~~yd~~~-~~W---~~~~~~p  146 (318)
T 2woz_A           78 SYFFQLDNVSSE---WVGLPPLPSARCLFGLGEV--DDK-IYVVAGKDLQTE-ASLDSVLCYDPVA-AKW---SEVKNLP  146 (318)
T ss_dssp             BEEEEEETTTTE---EEECSCBSSCBCSCEEEEE--TTE-EEEEEEEBTTTC-CEEEEEEEEETTT-TEE---EEECCCS
T ss_pred             ccEEEEeCCCCc---EEECCCCCccccccceEEE--CCE-EEEEcCccCCCC-cccceEEEEeCCC-CCE---eECCCCC
Confidence            469999999887   455543221   1222222  454 44333 221110 0135789999874 443   3333222


Q ss_pred             CCcccCCcCceECcCCcEEEEE--eC-CCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEE
Q 008927          297 PTIVESPTEPKWSSKGELFFVT--DR-KNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIAC  373 (548)
Q Consensus       297 ~~~~~~~~~~~wspDG~L~~~s--d~-~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~  373 (548)
                      ..  .... .....+++||++.  +. ..-...++.+|+.+++.+.+.+..    .+....   .....     ++.||+
T Consensus       147 ~~--r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p----~~r~~~---~~~~~-----~~~iyv  211 (318)
T 2woz_A          147 IK--VYGH-NVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK----TPRSMF---GVAIH-----KGKIVI  211 (318)
T ss_dssp             SC--EESC-EEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCS----SCCBSC---EEEEE-----TTEEEE
T ss_pred             Cc--cccc-EEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCC----CCcccc---eEEEE-----CCEEEE
Confidence            01  1111 1223577777773  21 112456999999999888775321    111110   11222     345555


Q ss_pred             EEE-eCC--eEEEEEEECCCCceEeecC-CCcee-EeeeecCCEEEEEEecC-----------CCCCeEEEEEcCCCce
Q 008927          374 SYR-QNG--RSYLGILDDFGHSLSLLDI-PFTDI-DNITLGNDCLFVEGASG-----------VEPSSVAKVTLDDHKL  436 (548)
Q Consensus       374 ~~~-~~g--~~~L~~~dl~~g~~~~l~~-~~~~~-~~~s~d~~~l~~~~ss~-----------~~p~~l~~~d~~~~~~  436 (548)
                      ..- .+.  ...++++|+++++++.+.. +.... ..+..-++.|++++...           ....+++++|+++.+.
T Consensus       212 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  290 (318)
T 2woz_A          212 AGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW  290 (318)
T ss_dssp             EEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred             EcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEe
Confidence            432 221  3578899999999988763 22111 12223455677665432           1246889999887765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=88.25  E-value=29  Score=36.87  Aligned_cols=53  Identities=11%  Similarity=0.071  Sum_probs=32.5

Q ss_pred             eEEEEEEECCCCceE-eecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          380 RSYLGILDDFGHSLS-LLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       380 ~~~L~~~dl~~g~~~-~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      ...|+.+|+.+|++. +...+..... .+...++.+++ ++   ....|+.+|.++|+.
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~-gt---~dg~l~A~D~~tG~~  506 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFY-GT---LDGYLKARDSDTGDL  506 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE-EC---TTSEEEEEETTTCCE
T ss_pred             cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEE-EC---CCCeEEEEECCCCCE
Confidence            367999999999754 2322222222 23455665544 43   246899999998873

>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus}

Probab=87.36  E-value=0.45  Score=44.67  Aligned_cols=37  Identities=19%  Similarity=0.315  Sum_probs=29.1

Q ss_pred             cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      |.||++||.+....  .|...+..|+.+ |.|+.+|.||-
T Consensus        17 ~~vvllHG~~~~~~--~~~~~~~~L~~~-~~vi~~Dl~G~   53 (269)
T 2xmz_A           17 QVLVFLHGFLSDSR--TYHNHIEKFTDN-YHVITIDLPGH   53 (269)
T ss_dssp             EEEEEECCTTCCGG--GGTTTHHHHHTT-SEEEEECCTTS
T ss_pred             CeEEEEcCCCCcHH--HHHHHHHHHhhc-CeEEEecCCCC
Confidence            35999999987654  456667778765 99999999984

>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11

Probab=87.30  E-value=0.44  Score=45.59  Aligned_cols=50  Identities=18%  Similarity=0.074  Sum_probs=36.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +|.+++-...           |+ -|.||++||.|.+..  .|...+..|+.+ |-|+.+|.||-
T Consensus        17 ~g~~l~y~~~-----------G~-g~~lvllHG~~~~~~--~w~~~~~~L~~~-~~via~Dl~G~   66 (294)
T 1ehy_A           17 PDVKIHYVRE-----------GA-GPTLLLLHGWPGFWW--EWSKVIGPLAEH-YDVIVPDLRGF   66 (294)
T ss_dssp             SSCEEEEEEE-----------EC-SSEEEEECCSSCCGG--GGHHHHHHHHTT-SEEEEECCTTS
T ss_pred             CCEEEEEEEc-----------CC-CCEEEEECCCCcchh--hHHHHHHHHhhc-CEEEecCCCCC
Confidence            7877765432           11 267999999987553  466667778776 99999999984

>3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP}

Probab=87.22  E-value=1.4  Score=42.15  Aligned_cols=50  Identities=12%  Similarity=0.147  Sum_probs=35.3

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +|..++-...           +.. |.||++||.|....  .|....+.| ++||.|+.+|.||-
T Consensus        13 ~~~~~~~~~~-----------g~g-~~~vllHG~~~~~~--~w~~~~~~l-~~~~~vi~~Dl~G~   62 (291)
T 3qyj_A           13 TEARINLVKA-----------GHG-APLLLLHGYPQTHV--MWHKIAPLL-ANNFTVVATDLRGY   62 (291)
T ss_dssp             SSCEEEEEEE-----------CCS-SEEEEECCTTCCGG--GGTTTHHHH-TTTSEEEEECCTTS
T ss_pred             CCeEEEEEEc-----------CCC-CeEEEECCCCCCHH--HHHHHHHHH-hCCCEEEEEcCCCC
Confidence            6777775432           112 56889999997654  355556666 46999999999983

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=87.15  E-value=24  Score=34.71  Aligned_cols=149  Identities=11%  Similarity=0.059  Sum_probs=73.7

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecce----eeCCCCCE--EEEEEeccCCCCCCceeEEEEEECC
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADG----IFDPRFNR--YVTVREDRRQDALNSTTEIVAIALN  229 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~----~~SpDG~~--i~~v~~~~~~~~~~~~~~l~~idl~  229 (548)
                      .++...++.+.|++++++|  ...+.|...      ++.+.    .+.-.|+.  |+++.+... +  ..+-.||.+|.+
T Consensus        41 s~ii~t~k~~gL~Vydl~G--~~l~~~~~g------~~nnVD~r~~~~l~g~~~dla~as~R~~-~--~n~l~vf~iDp~  109 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSLDG--KMLHSYNTG------KLNNVDIRYDFPLNGKKVDIAAASNRSE-G--KNTIEIYAIDGK  109 (355)
T ss_dssp             CEEEEEETTTEEEEEETTS--CEEEEECCS------CEEEEEEEEEEEETTEEEEEEEEEECST-T--CCEEEEEEECTT
T ss_pred             cEEEEEcCCCCEEEEcCCC--cEEEEccCC------CcccEEEecccccCCceEeEEEEeCCCC-C--CCeEEEEEECCC
Confidence            3455555667899999986  556666542      22221    23224554  566644320 0  123456777777


Q ss_pred             CCCccCcEEeeec-----C--CceeeeEE--CCC-CCEEEEEEecCCCCCCCCceEEEEEe--cCCCceee--eEEEcCC
Q 008927          230 GQNIQEPKVLVSG-----S--DFYAFPRM--DPR-GERMAWIEWHHPNMPWDKAELWVGYI--SENGDVYK--RVCVAGF  295 (548)
Q Consensus       230 ~g~~~~~~~L~~~-----~--~~~~~p~~--SPD-Gk~La~~~~~~~~~p~~~~~L~v~~~--~~~g~~~~--~~~l~~~  295 (548)
                      +++   .+.+...     .  ......++  +|+ |+..+|+...       ...+..+++  ..+|.+..  .+.+.-.
T Consensus       110 ~~~---l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k-------~G~~~q~~l~~~~~g~~~~~lVR~f~lg  179 (355)
T 3amr_A          110 NGT---LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK-------EGEFEQYELKADKNGYISGKKVRAFKMN  179 (355)
T ss_dssp             TCC---EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS-------SSEEEEEEEEECTTSCEEEEEEEEEECS
T ss_pred             CCc---eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC-------CCeEEEEEEEeCCCCcccceEEEEecCC
Confidence            776   5555321     1  11122345  774 5656777632       234444444  22343221  2333221


Q ss_pred             CCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEecc
Q 008927          296 DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES  333 (548)
Q Consensus       296 ~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~  333 (548)
                           .........+....+|+.+. .  ..||+++.+
T Consensus       180 -----sq~EgcvvDd~~g~Lyv~eE-d--~GIw~~da~  209 (355)
T 3amr_A          180 -----SQTEGMAADDEYGRLYIAEE-D--EAIWKFSAE  209 (355)
T ss_dssp             -----SCEEEEEEETTTTEEEEEET-T--TEEEEEECS
T ss_pred             -----CCcceEEEcCCCCeEEEecc-c--ceEEEEeCC
Confidence                 22334555555445566655 2  248899854

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=87.12  E-value=13  Score=40.34  Aligned_cols=240  Identities=7%  Similarity=-0.050  Sum_probs=0.0

Q ss_pred             CeEEEEeCCCCCCCceecC-C-----CCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE
Q 008927          165 QRLYKHSIDSKDSSPLPIT-P-----DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV  238 (548)
Q Consensus       165 ~~Ly~~~~~~~~~~~~~lT-~-----~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~  238 (548)
                      ..+|++++..  .+-+.+. +     ... +...++...++.+|+.+++--.+....   ..+++|++|+.+.+   -+.
T Consensus       412 ~~v~~yd~~~--~~W~~~~~~~p~~~~p~-~R~~hs~~~~~~~~~lyv~GG~~~~~~---~~~dv~~yd~~t~~---W~~  482 (695)
T 2zwa_A          412 NEILQLSIHY--DKIDMKNIEVSSSEVPV-ARMCHTFTTISRNNQLLLIGGRKAPHQ---GLSDNWIFDMKTRE---WSM  482 (695)
T ss_dssp             CCEEEEEECS--SCEEEEECCCCCSCCCC-CCBSCEEEEETTTTEEEEECCBSSTTC---BCCCCEEEETTTTE---EEE
T ss_pred             CcEEEEECCC--CeEEEeccCCCCCCCCc-cccceEEEEEccCCEEEEEcCCCCCCC---ccccEEEEeCCCCc---EEE


Q ss_pred             eeecCCc-eeeeEEC-CCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEE---EcCCCCCcccCCcCceECcC-C
Q 008927          239 LVSGSDF-YAFPRMD-PRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC---VAGFDPTIVESPTEPKWSSK-G  312 (548)
Q Consensus       239 L~~~~~~-~~~p~~S-PDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~---l~~~~~~~~~~~~~~~wspD-G  312 (548)
                      +...+.. ..+.... .+|+-++|-..+...      .++++|.. ...+.....   .....    .......+..+ +
T Consensus       483 ~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~------~v~~yd~~-t~~W~~~~~~g~~p~~r----~~~~a~v~~~~~~  551 (695)
T 2zwa_A          483 IKSLSHTRFRHSACSLPDGNVLILGGVTEGP------AMLLYNVT-EEIFKDVTPKDEFFQNS----LVSAGLEFDPVSK  551 (695)
T ss_dssp             CCCCSBCCBSCEEEECTTSCEEEECCBCSSC------SEEEEETT-TTEEEECCCSSGGGGSC----CBSCEEEEETTTT
T ss_pred             CCCCCCCcccceEEEEcCCEEEEECCCCCCC------CEEEEECC-CCceEEccCCCCCCCcc----cceeEEEEeCCCC


Q ss_pred             cEEEEEeCCCCe----eeEEEEeccCCe------eEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEE
Q 008927          313 ELFFVTDRKNGF----WNLHKWIESNNE------VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY  382 (548)
Q Consensus       313 ~L~~~sd~~~g~----~~Ly~~d~~~g~------~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~  382 (548)
                      +||++.-...+.    ..++.+|+.+++      .+.+...      |............    +++.||+..-.++...
T Consensus       552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~------p~~~R~~~~~~~~----~~~~iyv~GG~~~~~~  621 (695)
T 2zwa_A          552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH------PLFQRYGSQIKYI----TPRKLLIVGGTSPSGL  621 (695)
T ss_dssp             EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC------GGGCCBSCEEEEE----ETTEEEEECCBCSSCC
T ss_pred             EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC------CCCCcccceEEEe----CCCEEEEECCccCCCC


Q ss_pred             ------EEEEECCCCceEeecCCCce----------eEeeeecCCEEEEEEecCCC------CCeEEEEEcCCC
Q 008927          383 ------LGILDDFGHSLSLLDIPFTD----------IDNITLGNDCLFVEGASGVE------PSSVAKVTLDDH  434 (548)
Q Consensus       383 ------L~~~dl~~g~~~~l~~~~~~----------~~~~s~d~~~l~~~~ss~~~------p~~l~~~d~~~~  434 (548)
                            ++++|+++++++.+..+...          ...+..+++.|++++...+.      ...+|.+|+..+
T Consensus       622 ~~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfsfGt~~n~i~~ldl~~~  695 (695)
T 2zwa_A          622 FDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSVTNVGLKLIAIAK  695 (695)
T ss_dssp             CCTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCEEECTTSCEEECCCEEEEECCC
T ss_pred             CCCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCCccCcCccccccceEEEEEEcC

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=86.97  E-value=20  Score=33.66  Aligned_cols=211  Identities=9%  Similarity=-0.050  Sum_probs=104.2

Q ss_pred             EECCEEEEEeCC-----CCeEEEEeCCCCCCC---ceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 008927          152 IFGDTVIFSNYK-----DQRLYKHSIDSKDSS---PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (548)
Q Consensus       152 ~~~~~i~F~~~~-----~~~Ly~~~~~~~~~~---~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l  223 (548)
                      ..++.|+..-..     ...+|++++..  .+   -+.+.+..   ..|.......-++ .|+.+ .....  ....+++
T Consensus        60 ~~~~~l~v~GG~~~~~~~~~~~~~d~~~--~~~~~W~~~~~~p---~~r~~~~~~~~~~-~lyv~-GG~~~--~~~~~~~  130 (301)
T 2vpj_A           60 SLHDRIYVIGGYDGRSRLSSVECLDYTA--DEDGVWYSVAPMN---VRRGLAGATTLGD-MIYVS-GGFDG--SRRHTSM  130 (301)
T ss_dssp             EETTEEEEECCBCSSCBCCCEEEEETTC--CTTCCCEEECCCS---SCCBSCEEEEETT-EEEEE-CCBCS--SCBCCEE
T ss_pred             EECCEEEEEcCCCCCccCceEEEEECCC--CCCCeeEECCCCC---CCccceeEEEECC-EEEEE-cccCC--CcccceE
Confidence            345555554321     14799999987  55   66776542   1222221222244 44333 22111  1235689


Q ss_pred             EEEECCCCCccCcEEeeecCCc-eeeeEECCCCCEEEEEE-ecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCccc
Q 008927          224 VAIALNGQNIQEPKVLVSGSDF-YAFPRMDPRGERMAWIE-WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE  301 (548)
Q Consensus       224 ~~idl~~g~~~~~~~L~~~~~~-~~~p~~SPDGk~La~~~-~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~  301 (548)
                      +++|+.+.+   -+.+...+.. .......-+++ |..+. .+...   ....++++|+.. +++   ..+...+ .  .
T Consensus       131 ~~~d~~~~~---W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~---~~~~~~~~d~~~-~~W---~~~~~~p-~--~  196 (301)
T 2vpj_A          131 ERYDPNIDQ---WSMLGDMQTAREGAGLVVASGV-IYCLGGYDGLN---ILNSVEKYDPHT-GHW---TNVTPMA-T--K  196 (301)
T ss_dssp             EEEETTTTE---EEEEEECSSCCBSCEEEEETTE-EEEECCBCSSC---BCCCEEEEETTT-TEE---EEECCCS-S--C
T ss_pred             EEEcCCCCe---EEECCCCCCCcccceEEEECCE-EEEECCCCCCc---ccceEEEEeCCC-CcE---EeCCCCC-c--c
Confidence            999999887   5555432211 11111222554 44332 11111   245799999874 544   3333222 0  1


Q ss_pred             CCcCceECcCCcEEEEEeCC-CC-eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC
Q 008927          302 SPTEPKWSSKGELFFVTDRK-NG-FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (548)
Q Consensus       302 ~~~~~~wspDG~L~~~sd~~-~g-~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g  379 (548)
                      ........-+++||++.-.. .+ ...++.+|+++++.+.+.+..    .+...   .....     -++.|++..-.++
T Consensus       197 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p----~~r~~---~~~~~-----~~~~i~v~GG~~~  264 (301)
T 2vpj_A          197 RSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT----TPRCY---VGATV-----LRGRLYAIAGYDG  264 (301)
T ss_dssp             CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS----SCCBS---CEEEE-----ETTEEEEECCBCS
T ss_pred             cccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC----Ccccc---eeEEE-----ECCEEEEEcCcCC
Confidence            11111223366777774221 22 457999999999888775321    11111   01122     2345554422111


Q ss_pred             ---eEEEEEEECCCCceEeec
Q 008927          380 ---RSYLGILDDFGHSLSLLD  397 (548)
Q Consensus       380 ---~~~L~~~dl~~g~~~~l~  397 (548)
                         ...++++|+++++++.+.
T Consensus       265 ~~~~~~v~~yd~~~~~W~~~~  285 (301)
T 2vpj_A          265 NSLLSSIECYDPIIDSWEVVT  285 (301)
T ss_dssp             SSBEEEEEEEETTTTEEEEEE
T ss_pred             CcccccEEEEcCCCCeEEEcC
Confidence               367899999988887764

>4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A*

Probab=86.89  E-value=0.74  Score=44.71  Aligned_cols=68  Identities=13%  Similarity=0.108  Sum_probs=43.6

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCC---CCCCCCcEEEEEccCccccccCccC-hHHHHHHhcCcEEEEeC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQA---SPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVN  531 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~---~~~~~~Pliv~iHGGP~~~~~~~~~-~~~Q~~asrGyaVl~~N  531 (548)
                      ..+++.|..-|.+..-.+|.|.+  |+.   ++++++|+|.+.||..-....+.-. -..++.+..|.+|+.++
T Consensus        15 ~~~~~~S~~l~~~~~~~VyLPp~--y~~~~~~~~~~~PVLYlLhG~~~~~~~w~~~~~~~~~~~~~~~~~v~p~   86 (299)
T 4fol_A           15 IKLSHNSNSTKTSMNVNIYLPKH--YYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPD   86 (299)
T ss_dssp             EEEEEECTTTSSEEEEEEEECGG--GGCC------CBCEEEEECCTTCCHHHHHHHSCHHHHHHHHTCEEEEEC
T ss_pred             EEEEEECcccCCceEEEEEcCCC--CCccccccCCCcCEEEEECCCCCChHHHHHhchHhHHHHHcCchhhccC
Confidence            45677765367888999999954  532   2467899999999986443322111 12355667899999986

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=86.13  E-value=23  Score=33.38  Aligned_cols=213  Identities=6%  Similarity=-0.123  Sum_probs=103.7

Q ss_pred             EECCEEEEEeCC-----CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          152 IFGDTVIFSNYK-----DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       152 ~~~~~i~F~~~~-----~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      ..++.|+..-..     ...+|++|+..  .+-+.+.+..   ..|...-...-+++ |+.+-....   ....++++++
T Consensus        59 ~~~~~lyv~GG~~~~~~~~~~~~~d~~~--~~W~~~~~~p---~~r~~~~~~~~~~~-iyv~GG~~~---~~~~~~~~~~  129 (302)
T 2xn4_A           59 YMAGLVFAVGGFNGSLRVRTVDSYDPVK--DQWTSVANMR---DRRSTLGAAVLNGL-LYAVGGFDG---STGLSSVEAY  129 (302)
T ss_dssp             EETTEEEEESCBCSSSBCCCEEEEETTT--TEEEEECCCS---SCCBSCEEEEETTE-EEEEEEECS---SCEEEEEEEE
T ss_pred             EECCEEEEEeCcCCCccccceEEECCCC--CceeeCCCCC---ccccceEEEEECCE-EEEEcCCCC---CccCceEEEE
Confidence            345565554321     14799999986  5566666542   12222111222444 433322111   1245789999


Q ss_pred             ECCCCCccCcEEeeecCCc-eeeeEECCCCCEEEEEE-ecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCc
Q 008927          227 ALNGQNIQEPKVLVSGSDF-YAFPRMDPRGERMAWIE-WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT  304 (548)
Q Consensus       227 dl~~g~~~~~~~L~~~~~~-~~~p~~SPDGk~La~~~-~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~  304 (548)
                      |+.+.+   -+.+...+.. .......-+++ |..+. .+... .-....++++|+.. +++   ..+...+..  ....
T Consensus       130 d~~~~~---W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~-~~~~~~~~~yd~~~-~~W---~~~~~~p~~--r~~~  198 (302)
T 2xn4_A          130 NIKSNE---WFHVAPMNTRRSSVGVGVVGGL-LYAVGGYDVAS-RQCLSTVECYNATT-NEW---TYIAEMSTR--RSGA  198 (302)
T ss_dssp             ETTTTE---EEEECCCSSCCBSCEEEEETTE-EEEECCEETTT-TEECCCEEEEETTT-TEE---EEECCCSSC--CBSC
T ss_pred             eCCCCe---EeecCCCCCcccCceEEEECCE-EEEEeCCCCCC-CccccEEEEEeCCC-CcE---EECCCCccc--cccc
Confidence            999887   5555432211 11111122454 43332 11110 00135689999874 444   233322201  1111


Q ss_pred             CceECcCCcEEEEEeCC-CC-eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC---
Q 008927          305 EPKWSSKGELFFVTDRK-NG-FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---  379 (548)
Q Consensus       305 ~~~wspDG~L~~~sd~~-~g-~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g---  379 (548)
                       ....-+++||++.-.. .. ...++.+|+++++.+.+.+..    .+...   .....     -++.||+..-.++   
T Consensus       199 -~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~----~~r~~---~~~~~-----~~~~i~v~GG~~~~~~  265 (302)
T 2xn4_A          199 -GVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN----MCRRN---AGVCA-----VNGLLYVVGGDDGSCN  265 (302)
T ss_dssp             -EEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS----SCCBS---CEEEE-----ETTEEEEECCBCSSSB
T ss_pred             -cEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC----Ccccc---CeEEE-----ECCEEEEECCcCCCcc
Confidence             1223367777774221 11 346999999999888775321    11110   11122     2445655432221   


Q ss_pred             eEEEEEEECCCCceEeec
Q 008927          380 RSYLGILDDFGHSLSLLD  397 (548)
Q Consensus       380 ~~~L~~~dl~~g~~~~l~  397 (548)
                      ...++++|+++++++.+.
T Consensus       266 ~~~v~~yd~~~~~W~~~~  283 (302)
T 2xn4_A          266 LASVEYYNPTTDKWTVVS  283 (302)
T ss_dssp             CCCEEEEETTTTEEEECS
T ss_pred             cccEEEEcCCCCeEEECC
Confidence            346889999998888775

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=85.81  E-value=2.6  Score=44.88  Aligned_cols=67  Identities=10%  Similarity=0.097  Sum_probs=47.5

Q ss_pred             ceeeCCCCCEEEEEEeccCCCC-----CCceeEEEEEECCCCCccCcEEeeecCC--ceeeeEECCCCCEEEEEEecCCC
Q 008927          195 DGIFDPRFNRYVTVREDRRQDA-----LNSTTEIVAIALNGQNIQEPKVLVSGSD--FYAFPRMDPRGERMAWIEWHHPN  267 (548)
Q Consensus       195 ~~~~SpDG~~i~~v~~~~~~~~-----~~~~~~l~~idl~~g~~~~~~~L~~~~~--~~~~p~~SPDGk~La~~~~~~~~  267 (548)
                      ++.++|+|.  +++++|.....     ....+.++.++..+|+   .+++..++.  -...|.|||||++| |+.-.||+
T Consensus       480 NL~fd~~G~--LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~---~~rf~~~P~gaE~TG~~fspDg~tl-fvniQHPG  553 (592)
T 3zwu_A          480 GLGFDKAGR--LWILTDGDSSNAGDFAGMGNNQMLCADPATGE---IRRFMVGPIGCEVTGISFSPDQKTL-FVGIQHPG  553 (592)
T ss_dssp             EEEECTTCC--EEEEECCCCCCSGGGTTTCSCEEEEECTTTCC---EEEEEECCTTCEEEEEEECTTSSEE-EEEEESTT
T ss_pred             ceEECCCCC--EEEEecCCCcccccccccccceEEEEeCCCCe---EEEEEeCCCCccCcCeeECCCCCEE-EEEEECCC
Confidence            467999997  45557753210     1135789999999998   777765543  26789999999987 56667874

>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11}

Probab=85.42  E-value=0.73  Score=43.34  Aligned_cols=37  Identities=16%  Similarity=0.154  Sum_probs=28.8

Q ss_pred             CcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCC
Q 008927          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       495 ~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      -|.||++||.+....  .|...++.|+ ++|.|+.+|+||
T Consensus        15 ~~~vvllHG~~~~~~--~w~~~~~~L~-~~~~vi~~Dl~G   51 (268)
T 3v48_A           15 APVVVLISGLGGSGS--YWLPQLAVLE-QEYQVVCYDQRG   51 (268)
T ss_dssp             CCEEEEECCTTCCGG--GGHHHHHHHH-TTSEEEECCCTT
T ss_pred             CCEEEEeCCCCccHH--HHHHHHHHHh-hcCeEEEECCCC
Confidence            478999999876543  4566667775 579999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	548
d2hu7a2	260	c.69.1.33 (A:322-581) Acylamino-acid-releasing enz	2e-04
d2bgra2	258	c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26	0.002
d1xfda2	258	c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li	0.003

>d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acylamino-acid-releasing enzyme, C-terminal donain
domain: Acylamino-acid-releasing enzyme, C-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 9/84 (10%)

Query: 449 PDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE 508
           P+ L+     +   L+   +   G +   Y                 P +V  HGGP +E
Sbjct: 2   PEDLRRS--IAGSRLVWVESF-DGSRVPTYVLES------GRAPTPGPTVVLVHGGPFAE 52

Query: 509 ARGILNLSIQYWTSRGWAFVDVNY 532
                +       + G+  V  NY
Sbjct: 53  DSDSWDTFAASLAAAGFHVVMPNY 76

>d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: DPP6 catalytic domain-like
domain: Dipeptidyl peptidase IV/CD26, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 460 LP-ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---LNL 515
           +P + ++F   +   K +     P +        +K PLL+  + GP S+       LN 
Sbjct: 1   MPSKKLDF-IILNETKFWYQMILPPH----FDKSKKYPLLLDVYAGPCSQKADTVFRLNW 55

Query: 516 SIQYWTSRGWAFVDVNYGGSTG 537
           +    ++        +  GS  
Sbjct: 56  ATYLASTENIIVASFDGRGSGY 77

>d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: DPP6 catalytic domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 8/73 (10%)

Query: 464 IEFPT-EVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---LNLSIQY 519
           +E+   E+           P+      +     PLL+   G P S++      ++     
Sbjct: 3   VEYRDIEIDDYNLPMQILKPAT----FTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVM 58

Query: 520 WTSRGWAFVDVNY 532
            +S G   V  + 
Sbjct: 59  VSSHGAVVVKCDG 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	548
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.84
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.82
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.82
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.79
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.74
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.72
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.64
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.61
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.51
d1xfda2	258	Dipeptidyl aminopeptidase-like protein 6, DPP6, C-	99.5
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.46
d2bgra2	258	Dipeptidyl peptidase IV/CD26, C-terminal domain {P	99.46
d2hu7a2	260	Acylamino-acid-releasing enzyme, C-terminal donain	99.46
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	99.39
d1qfma2	280	Prolyl oligopeptidase, C-terminal domain {Pig (Sus	99.13
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.07
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.07
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.89
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.8
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.8
d1vlqa_	322	Acetyl xylan esterase TM0077 {Thermotoga maritima	98.8
d1l7aa_	318	Cephalosporin C deacetylase {Bacillus subtilis [Ta	98.78
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.78
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.78
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	98.75
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.71
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.63
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.6
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.59
d1ju3a2	347	Bacterial cocaine esterase N-terminal domain {Rhod	98.58
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.58
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.52
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.48
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.45
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.44
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.43
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.43
d1mpxa2	381	Alpha-amino acid ester hydrolase {Xanthomonas citr	98.42
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.41
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.4
d1jkma_	358	Carboxylesterase {Bacillus subtilis, brefeldin A e	98.4
d1thta_	302	Myristoyl-ACP-specific thioesterase {Vibrio harvey	98.36
d1dina_	233	Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI	98.31
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.3
d2gzsa1	265	Enterobactin and salmochelin hydrolase IroE {Esche	98.29
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	98.29
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.29
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.29
d1lzla_	317	Heroin esterase {Rhodococcus sp. [TaxId: 1831]}	98.28
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.26
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.25
d2pbla1	261	Uncharacterized protein TM1040_2492 {Silicibacter	98.23
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.23
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.22
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.21
d2b9va2	385	Alpha-amino acid ester hydrolase {Acetobacter past	98.21
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.2
d1qlwa_	318	A novel bacterial esterase {Alcaligenes sp. [TaxId	98.17
d2jbwa1	360	2,6-dihydropseudooxynicotine hydrolase {Arthrobact	98.15
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.12
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.1
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.09
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.05
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	98.05
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.03
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.02
d1u4na_	308	Carboxylesterase {Alicyclobacillus acidocaldarius	97.98
d1jjia_	311	Carboxylesterase {Archaeon Archaeoglobus fulgidus	97.94
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.9
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.9
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.89
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.88
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.74
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.74
d1wb4a1	273	Feruloyl esterase domain of the cellulosomal xylan	97.73
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.72
d1jfra_	260	Lipase {Streptomyces exfoliatus [TaxId: 1905]}	97.64
d1lnsa3	405	X-Prolyl dipeptidyl aminopeptidase PepX, middle do	97.64
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.62
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.56
d2fuka1	218	XC6422 protein {Xanthomonas campestris [TaxId: 339	97.48
d2i3da1	218	Hypothetical protein Atu1826 {Agrobacterium tumefa	97.47
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.36
d1a88a_	275	Chloroperoxidase L {Streptomyces lividans [TaxId:	97.34
d1k8qa_	377	Gastric lipase {Dog (Canis familiaris) [TaxId: 961	97.26
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.25
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.23
d1imja_	208	Ccg1/TafII250-interacting factor B (Cib) {Human (H	97.13
d1sfra_	288	Antigen 85a {Mycobacterium tuberculosis [TaxId: 17	97.1
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.97
d1vkha_	263	Putative serine hydrolase Ydr428c {Baker's yeast (	96.95
d3c8da2	246	Enterochelin esterase, catalytic domain {Shigella	96.89
d1va4a_	271	Arylesterase {Pseudomonas fluorescens [TaxId: 294]	96.85
d1a8sa_	273	Chloroperoxidase F {Pseudomonas fluorescens [TaxId	96.8
d1ufoa_	238	Hypothetical protein TT1662 {Thermus thermophilus	96.67
d1jjfa_	255	Feruloyl esterase domain of the cellulosomal xylan	96.53
d1mtza_	290	Tricorn interacting factor F1 {Archaeon Thermoplas	96.52
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.52
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.48
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.4
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	96.37
d1a8qa_	274	Bromoperoxidase A1 {Streptomyces aureofaciens [Tax	96.36
d1tqha_	242	Carboxylesterase Est {Bacillus stearothermophilus	96.33
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	96.29
d1zd3a2	322	Mammalian epoxide hydrolase, C-terminal domain {Hu	96.18
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.07
d1r3da_	264	Hypothetical protein VC1974 {Vibrio cholerae [TaxI	95.9
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	95.68
d1b6ga_	310	Haloalkane dehalogenase {Xanthobacter autotrophicu	95.62
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.55
d1wm1a_	313	Proline aminopeptidase {Serratia marcescens [TaxId	95.44
d1llfa_	534	Type-B carboxylesterase/lipase {Candida cylindrace	95.43
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.34
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.3
d1q0ra_	297	Aclacinomycin methylesterase RdmC {Streptomyces pu	95.28
d1qo7a_	394	Bacterial epoxide hydrolase {Aspergillus niger [Ta	95.24
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.16
d1brta_	277	Bromoperoxidase A2 {Streptomyces aureofaciens [Tax	95.05
d1bn7a_	291	Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1	95.03
d2h7ca1	532	Mammalian carboxylesterase (liver carboxylesterase	94.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	94.83
d1qe3a_	483	Thermophilic para-nitrobenzyl esterase (PNB estera	94.8
d1hkha_	279	Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]	94.68
d1azwa_	313	Proline iminopeptidase {Xanthomonas campestris, pv	94.51
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	94.12
d1c4xa_	281	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas	94.07
d1j1ia_	268	Meta cleavage compound hydrolase CarC {Janthinobac	93.95
d1ea5a_	532	Acetylcholinesterase {Pacific electric ray (Torped	93.93
d1dqza_	280	Antigen 85c {Mycobacterium tuberculosis [TaxId: 17	93.89
d1tcaa_	317	Triacylglycerol lipase {Yeast (Candida antarctica)	93.82
d2ha2a1	542	Acetylcholinesterase {Mouse (Mus musculus) [TaxId:	93.74
d1pv1a_	299	Hypothetical esterase YJL068C {Baker's yeast (Sacc	93.36
d1r88a_	267	Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta	93.32
d1ehya_	293	Bacterial epoxide hydrolase {Agrobacterium radioba	92.95
d1thga_	544	Type-B carboxylesterase/lipase {Fungus (Geotrichum	92.92
d2rhwa1	283	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas	92.77
d1mj5a_	298	Haloalkane dehalogenase {Sphingomonas paucimobilis	92.69
d1ukca_	517	Esterase EstA {Aspergillus niger [TaxId: 5061]}	92.57
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	92.51
d1m33a_	256	Biotin biosynthesis protein BioH {Escherichia coli	92.41
d1p0ia_	526	Butyryl cholinesterase {Human (Homo sapiens) [TaxI	92.3
d1cvla_	319	Lipase {Chromobacterium viscosum [TaxId: 42739]}	91.58
d2bcea_	579	Bile-salt activated lipase (cholesterol esterase)	91.58
d1dx4a_	571	Acetylcholinesterase {Fruit fly (Drosophila melano	91.22
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	89.34
d1uk8a_	271	Meta-cleavage product hydrolase CumD {Pseudomonas	89.13
d2h1ia1	202	Carboxylesterase {Bacillus cereus [TaxId: 1396]}	89.12
d1ex9a_	285	Lipase {Pseudomonas aeruginosa [TaxId: 287]}	88.82
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	85.62
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	84.79
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	84.74
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	83.51
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	81.12

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=8.2e-19  Score=168.69  Aligned_cols=241  Identities=14%  Similarity=0.156  Sum_probs=174.7

Q ss_pred             CEEEEEeCCCC-----eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927          155 DTVIFSNYKDQ-----RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (548)
Q Consensus       155 ~~i~F~~~~~~-----~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~  229 (548)
                      .+|+|+.++++     +||++|.+|  +.+++||...    .....|.|||||++|+|++....      ...++.++..
T Consensus         4 ~~iay~~~~~~~~~~~~l~i~d~dG--~~~~~l~~~~----~~~~sP~wSPDGk~IAf~~~~~~------~~~~~~~~~~   71 (269)
T d2hqsa1           4 TRIAYVVQTNGGQFPYELRVSDYDG--YNQFVVHRSP----QPLMSPAWSPDGSKLAYVTFESG------RSALVIQTLA   71 (269)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTS--CSCEEEEEES----SCEEEEEECTTSSEEEEEECTTS------SCEEEEEETT
T ss_pred             CeEEEEEEeCCCCceEEEEEEcCCC--CCcEEEecCC----CceeeeEECCCCCEEEEEEeecc------Ccceeeeecc
Confidence            36888876542     799999998  8999998763    23567899999999999865432      3579999999


Q ss_pred             CCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (548)
Q Consensus       230 ~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws  309 (548)
                      ++.   .++++...+....+.|||||++|++.....     ....+....... ..   ........    .....+.|+
T Consensus        72 ~~~---~~~~~~~~~~~~~~~~spdg~~i~~~~~~~-----~~~~~~~~~~~~-~~---~~~~~~~~----~~~~~~~~~  135 (269)
T d2hqsa1          72 NGA---VRQVASFPRHNGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLAS-GQ---IRQVTDGR----SNNTEPTWF  135 (269)
T ss_dssp             TCC---EEEEECCSSCEEEEEECTTSSEEEEEECTT-----SSCEEEEEETTT-CC---EEECCCCS----SCEEEEEEC
T ss_pred             cCc---eeEEeeeecccccceecCCCCeeeEeeecC-----Cccceeeccccc-cc---ceeeeecc----ccccccccc
Confidence            998   788887766677889999999999887432     134455444332 21   22222222    344567899


Q ss_pred             cCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEEC
Q 008927          310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (548)
Q Consensus       310 pDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl  388 (548)
                      ++++ +++.+.+ .|..+|+.++++++...+++........+         .++|   +++.+++.....+...|++++.
T Consensus       136 ~~~~~~~~~~~~-~g~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~sp---dg~~~~~~~~~~~~~~i~~~~~  202 (269)
T d2hqsa1         136 PDSQNLAFTSDQ-AGRPQVYKVNINGGAPQRITWEGSQNQDA---------DVSS---DGKFMVMVSSNGGQQHIAKQDL  202 (269)
T ss_dssp             TTSSEEEEEECT-TSSCEEEEEETTSSCCEECCCSSSEEEEE---------EECT---TSSEEEEEEECSSCEEEEEEET
T ss_pred             cccccceecccc-cCCceEeeeecccccceeeeccccccccc---------cccc---ccceeEEEeecCCceeeeEeec
Confidence            9999 8788877 78889999999888777666432222222         3443   8889998888889999999999


Q ss_pred             CCCceEeecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 008927          389 FGHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLK  437 (548)
Q Consensus       389 ~~g~~~~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~  437 (548)
                      +++..+.+.....+.. .+++||+.|+|+... ....+||+++++++..+
T Consensus       203 ~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~-~~~~~l~~~~~dg~~~~  251 (269)
T d2hqsa1         203 ATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ-GMGSVLNLVSTDGRFKA  251 (269)
T ss_dssp             TTCCEEECCCSSSCEEEEECTTSSEEEEEEEE-TTEEEEEEEETTSCCEE
T ss_pred             ccccceEeecCccccceEECCCCCEEEEEEcC-CCCcEEEEEECCCCCEE
Confidence            8887766655444433 358999999998754 45678999999887643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.82  E-value=1.6e-18  Score=167.13  Aligned_cols=244  Identities=14%  Similarity=0.040  Sum_probs=161.6

Q ss_pred             eeEEE--CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          149 AFRIF--GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       149 ~~~~~--~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      ..+||  |++|+|+.  +++||++++++  +++++||...    .....+.|||||++|+|++.....   ....+||++
T Consensus         5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~--g~~~~Lt~~~----~~~~~p~~SPDG~~iaf~~~~~~~---~~~~~i~~~   73 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC--CDDLWEHDLKS--GSTRKIVSNL----GVINNARFFPDGRKIAIRVMRGSS---LNTADLYFY   73 (281)
T ss_dssp             CEEEEEETTEEEEEE--TTEEEEEETTT--CCEEEEECSS----SEEEEEEECTTSSEEEEEEEESTT---CCEEEEEEE
T ss_pred             ccCCCCCCCEEEEEe--CCcEEEEECCC--CCEEEEecCC----CcccCEEECCCCCEEEEEEeeCCC---CCceEEEEE
Confidence            45899  99999998  56799999998  8999999863    356788999999999998654321   235789999


Q ss_pred             ECCCCCccCcEEeeecCC-------ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCc
Q 008927          227 ALNGQNIQEPKVLVSGSD-------FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI  299 (548)
Q Consensus       227 dl~~g~~~~~~~L~~~~~-------~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~  299 (548)
                      ++.+++   .++|+....       ....+.|||||+.|+|.....+.  .....++.++.+. +.   .+....     
T Consensus        74 ~~~~g~---~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~--~~~~~~~~~~~~~-~~---~~~~~~-----  139 (281)
T d1k32a2          74 NGENGE---IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPF--SSMTCLYRVENDG-IN---FVPLNL-----  139 (281)
T ss_dssp             ETTTTE---EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSS--TTCCEEEEEEGGG-TE---EEECCS-----
T ss_pred             EecCCc---eEEeeecCCCccCccccccccccCCCCCEEEEEEccCCC--ccceeeeeecCCC-ce---eEEecC-----
Confidence            999998   888875432       23467899999999987643322  1234566777652 32   222222     


Q ss_pred             ccCCcCceECcCCc-EEEEEeCCCC--------eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCE
Q 008927          300 VESPTEPKWSSKGE-LFFVTDRKNG--------FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNL  370 (548)
Q Consensus       300 ~~~~~~~~wspDG~-L~~~sd~~~g--------~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~  370 (548)
                        ......|.+||. +++.......        ...........+....++........         ..+     .++.
T Consensus       140 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-----~~~~  203 (281)
T d1k32a2         140 --GPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSS---------PVI-----VGHR  203 (281)
T ss_dssp             --CSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEE---------EEE-----ETTE
T ss_pred             --CccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccce---------eee-----eccc
Confidence              223467888887 6665433111        11122222223333333321111111         122     3456


Q ss_pred             EEEEEEeCCeEEEEEEECCCCceEeecCCCc-eeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCceee
Q 008927          371 IACSYRQNGRSYLGILDDFGHSLSLLDIPFT-DIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKA  438 (548)
Q Consensus       371 l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~-~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~  438 (548)
                      +++.....+..+||++|+++++.++|+.... .+..+++||+.|+|...     .+||++|+++++.++
T Consensus       204 ~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~~~~SpDG~~I~f~~~-----~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         204 IYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKG-----GSIYIFNPDTEKIEK  267 (281)
T ss_dssp             EEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEET-----TEEEEECTTTCCEEE
T ss_pred             cceecccccccceEEEeCCCCceEEeecCCCcccccCcCCCCEEEEEeC-----CEEEEEECCCCCEEE
Confidence            7777777888999999999999999986432 34456899999998653     579999999998643

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=4.9e-18  Score=163.12  Aligned_cols=251  Identities=11%  Similarity=0.094  Sum_probs=182.0

Q ss_pred             CcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC--CeEEEEeCCCCCC
Q 008927          100 GRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKDS  177 (548)
Q Consensus       100 ~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~--~~Ly~~~~~~~~~  177 (548)
                      .+|+|+..+...++..+||.++.+| ++++.||.....+.       .++|+|||++|+|...+.  .++|.++..+  +
T Consensus         4 ~~iay~~~~~~~~~~~~l~i~d~dG-~~~~~l~~~~~~~~-------sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~--~   73 (269)
T d2hqsa1           4 TRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLM-------SPAWSPDGSKLAYVTFESGRSALVIQTLAN--G   73 (269)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEE-------EEEECTTSSEEEEEECTTSSCEEEEEETTT--C
T ss_pred             CeEEEEEEeCCCCceEEEEEEcCCC-CCcEEEecCCCcee-------eeEECCCCCEEEEEEeeccCcceeeeeccc--C
Confidence            5899998765556677999998885 58999986543332       258999999999998664  4899999987  7


Q ss_pred             CceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCE
Q 008927          178 SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGER  257 (548)
Q Consensus       178 ~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~  257 (548)
                      ..++++...    .....+.|||||+.|++......      ...++........   ...+.........+.++++++.
T Consensus        74 ~~~~~~~~~----~~~~~~~~spdg~~i~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  140 (269)
T d2hqsa1          74 AVRQVASFP----RHNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFPDSQN  140 (269)
T ss_dssp             CEEEEECCS----SCEEEEEECTTSSEEEEEECTTS------SCEEEEEETTTCC---EEECCCCSSCEEEEEECTTSSE
T ss_pred             ceeEEeeee----cccccceecCCCCeeeEeeecCC------ccceeeccccccc---ceeeeecccccccccccccccc
Confidence            788887752    34456789999999999765432      2356666655555   4555555555667899999999


Q ss_pred             EEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCe
Q 008927          258 MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE  336 (548)
Q Consensus       258 La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~  336 (548)
                      +.++....     ...+|++.+++. +.   ...+....    .....+.|+|||+ +++.+.+ .+...|+.++.+++.
T Consensus       141 ~~~~~~~~-----g~~~i~~~~~~~-~~---~~~~~~~~----~~~~~~~~spdg~~~~~~~~~-~~~~~i~~~~~~~~~  206 (269)
T d2hqsa1         141 LAFTSDQA-----GRPQVYKVNING-GA---PQRITWEG----SQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGG  206 (269)
T ss_dssp             EEEEECTT-----SSCEEEEEETTS-SC---CEECCCSS----SEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTCC
T ss_pred             ceeccccc-----CCceEeeeeccc-cc---ceeeeccc----ccccccccccccceeEEEeec-CCceeeeEeeccccc
Confidence            98877432     246899999874 32   23333332    4456789999999 8888877 788899999987776


Q ss_pred             eEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCC
Q 008927          337 VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF  400 (548)
Q Consensus       337 ~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~  400 (548)
                      .+.+. .......|         .|+|   ||++|+|....++..+||+++++++..++|+...
T Consensus       207 ~~~~~-~~~~~~~p---------~~SP---DG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~  257 (269)
T d2hqsa1         207 VQVLS-STFLDETP---------SLAP---NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATD  257 (269)
T ss_dssp             EEECC-CSSSCEEE---------EECT---TSSEEEEEEEETTEEEEEEEETTSCCEEECCCSS
T ss_pred             ceEee-cCccccce---------EECC---CCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCC
Confidence            55443 22111122         3554   8999999999999999999999999888887643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.9e-17  Score=172.80  Aligned_cols=322  Identities=11%  Similarity=0.060  Sum_probs=197.3

Q ss_pred             CCcCCHHHHhcCC--CccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccC-CCCCCccccceeeCC--eee
Q 008927           76 KSPLTADVVSGAS--KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT-PKEYAVRTTAQEYGG--GAF  150 (548)
Q Consensus        76 ~spit~~~l~~~~--~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt-~~~~~~r~~v~~ygg--~~~  150 (548)
                      +.+||.|+++...  ..-.+++|++++.++|.+    ++|  .|+.++... +..+.|. ...+.      .+..  -.+
T Consensus         2 ~~~~tle~~~~~~~~~~~~~~~W~~~~~~~~~~----~~g--~i~~~~~~~-~~~~~l~~~~~~~------~~~~~~~~~   68 (465)
T d1xfda1           2 KKKVTVEDLFSEDFKIHDPEAKWISDTEFIYRE----QKG--TVRLWNVET-NTSTVLIEGKKIE------SLRAIRYEI   68 (465)
T ss_dssp             CCCCCHHHHTCTTTCCCCCCCCBSSSSCBCCCC----SSS--CEEEBCGGG-CCCEEEECTTTTT------TTTCSEEEE
T ss_pred             CCceeHHHHhCCccccCCCCCEEeCCCcEEEEe----CCC--cEEEEECCC-CCEEEEEcCcccc------ccccceeEE
Confidence            5789999998642  222367888733333321    234  355565542 3444433 23222      1222  246


Q ss_pred             EEECCEEEEEeCC--------CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 008927          151 RIFGDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE  222 (548)
Q Consensus       151 ~~~~~~i~F~~~~--------~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~  222 (548)
                      +||++.|+|..+.        .+.+|++++..  ++.++|+.... ...+...+.|||||+.|+|++.          ++
T Consensus        69 SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~--~~~~~l~~~~~-~~~~l~~~~wSPDG~~iafv~~----------~n  135 (465)
T d1xfda1          69 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPH--GDPQSLDPPEV-SNAKLQYAGWGPKGQQLIFIFE----------NN  135 (465)
T ss_dssp             CTTSSEEEEEESCCCCSSSCCCSEEEEEESSS--CCCEECCCTTC-CSCCCSBCCBCSSTTCEEEEET----------TE
T ss_pred             CCCCCeEEEEEcccceeEeeccccEEEEEccC--CceeeccCccC-CccccceeeeccCCceEEEEec----------ce
Confidence            7888898887642        25789999987  78888876432 1234556789999999999952          47


Q ss_pred             EEEEECCCCCccCcEEeeecC-C------------------ceeeeEECCCCCEEEEEEecCCCC-----CC--------
Q 008927          223 IVAIALNGQNIQEPKVLVSGS-D------------------FYAFPRMDPRGERMAWIEWHHPNM-----PW--------  270 (548)
Q Consensus       223 l~~idl~~g~~~~~~~L~~~~-~------------------~~~~p~~SPDGk~La~~~~~~~~~-----p~--------  270 (548)
                      ||.+++.++.   ..+|+... .                  ......|||||++|||...+....     ++        
T Consensus       136 l~~~~~~~~~---~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~  212 (465)
T d1xfda1         136 IYYCAHVGKQ---AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPT  212 (465)
T ss_dssp             EEEESSSSSC---CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCC
T ss_pred             EEEEecCCCc---eEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccce
Confidence            9999999887   66665321 1                  113567999999999987543321     10        


Q ss_pred             -------------CCceEEEEEecCCCceeeeEEEcCCCCC-cccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCC
Q 008927          271 -------------DKAELWVGYISENGDVYKRVCVAGFDPT-IVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN  335 (548)
Q Consensus       271 -------------~~~~L~v~~~~~~g~~~~~~~l~~~~~~-~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g  335 (548)
                                   ...+|++++++. +.. ....+...... ....+..+.|++|++ +++..+|......|+.+|..+|
T Consensus       213 ~~~~~Yp~~G~~np~~~l~v~d~~~-~~~-~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg  290 (465)
T d1xfda1         213 VKPYHYPKAGSENPSISLHVIGLNG-PTH-DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG  290 (465)
T ss_dssp             CEEEECCBTTSCCCEEEEEEEESSS-SCC-CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred             eeeeeccccCCCCCceeEEEEecCC-CcE-EEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCC
Confidence                         013688888874 321 11112111100 001234578999999 5555788677788999999999


Q ss_pred             eeEeecccccccCCCcccccC-cceeeeeecCCCCEEEEEE--EeCCeEEEEEEEC-------CCCceEeecCCCceeE-
Q 008927          336 EVLAIYSLDAEFSRPLWVFGI-NSYEIIQSHGEKNLIACSY--RQNGRSYLGILDD-------FGHSLSLLDIPFTDID-  404 (548)
Q Consensus       336 ~~~~l~~~~~d~~~p~w~~~~-~~~~~~~~~~d~~~l~~~~--~~~g~~~L~~~dl-------~~g~~~~l~~~~~~~~-  404 (548)
                      +.+.+..+.    ...|+... ....+++   |++.++|..  ..+|..++|.+++       .++..++|+.+...+. 
T Consensus       291 ~~~~~~~e~----~~~wv~~~~~~p~~~~---dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~  363 (465)
T d1xfda1         291 VCTKKHEDE----SEAWLHRQNEEPVFSK---DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK  363 (465)
T ss_dssp             CEEEEEEEE----CSSCCCCCCCCCEECT---TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE
T ss_pred             cEEEEEEEc----CCceEeccCCceeEcc---CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEE
Confidence            988776431    13453211 1233443   777776653  3567888887753       3445678887544433 


Q ss_pred             --eeeecCCEEEEEEecCC-CCCeEEEEEcCCCc
Q 008927          405 --NITLGNDCLFVEGASGV-EPSSVAKVTLDDHK  435 (548)
Q Consensus       405 --~~s~d~~~l~~~~ss~~-~p~~l~~~d~~~~~  435 (548)
                        .++.+++.|||+++... ...+||+++++++.
T Consensus       364 i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~  397 (465)
T d1xfda1         364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF  397 (465)
T ss_dssp             EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC
T ss_pred             EEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCC
Confidence              34667889999886422 23579999987665

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.74  E-value=4.8e-16  Score=161.91  Aligned_cols=325  Identities=9%  Similarity=0.067  Sum_probs=193.8

Q ss_pred             CCcCCHHHHhcCC--CccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCC-CCCCc-cccceeeCCeeeE
Q 008927           76 KSPLTADVVSGAS--KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITP-KEYAV-RTTAQEYGGGAFR  151 (548)
Q Consensus        76 ~spit~~~l~~~~--~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~-~~~~~-r~~v~~ygg~~~~  151 (548)
                      +.++|.|+++...  .....++|.+++.++|.+     ++...+|  +..+ ++.+.|+. ..+.. ...+   ....|+
T Consensus         2 ~~~~t~~~~~~~~~~~~~~~~~W~~d~~~~~~~-----~~~~~~~--~~~t-~~~~~~~~~~~~~~~~~~i---~~~~~S   70 (470)
T d2bgra1           2 RKTYTLTDYLKNTYRLKLYSLRWISDHEYLYKQ-----ENNILVF--NAEY-GNSSVFLENSTFDEFGHSI---NDYSIS   70 (470)
T ss_dssp             CEECCHHHHHHTCSCCCCCCCEECSSSEEEEES-----SSCEEEE--ETTT-CCEEEEECTTTTTTSSSCC---CEEEEC
T ss_pred             CCcEEhHHhhCCceeccccCCEeCCCCEEEEEc-----CCcEEEE--ECCC-CCEEEEEchhhhhhccCcc---ceeEEC
Confidence            4579999998752  445578899844444432     2443344  3332 34444432 22211 1112   123688


Q ss_pred             EECCEEEEEeCC--------CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 008927          152 IFGDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (548)
Q Consensus       152 ~~~~~i~F~~~~--------~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l  223 (548)
                      ||++.|+|..+.        .+.+|++++.+  ++.++++...    .....+.|||||+.|+|++.          .+|
T Consensus        71 pDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~--~~~~~l~~~~----~~~~~~~~SPDG~~ia~~~~----------~~l  134 (470)
T d2bgra1          71 PDGQFILLEYNYVKQWRHSYTASYDIYDLNK--RQLITEERIP----NNTQWVTWSPVGHKLAYVWN----------NDI  134 (470)
T ss_dssp             TTSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSSCCC----TTEEEEEECSSTTCEEEEET----------TEE
T ss_pred             CCCCEEEEEECCcceeeeccCceEEEEECCC--CcccccccCC----ccccccccccCcceeeEeec----------ccc
Confidence            999999998632        25789999998  7788887763    34567889999999999742          369


Q ss_pred             EEEECCCCCccCcEEeeecC-------------------CceeeeEECCCCCEEEEEEecCCCCC---------------
Q 008927          224 VAIALNGQNIQEPKVLVSGS-------------------DFYAFPRMDPRGERMAWIEWHHPNMP---------------  269 (548)
Q Consensus       224 ~~idl~~g~~~~~~~L~~~~-------------------~~~~~p~~SPDGk~La~~~~~~~~~p---------------  269 (548)
                      |++++.+++   ..+++...                   +......|||||++|||...+....+               
T Consensus       135 ~~~~~~~g~---~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~  211 (470)
T d2bgra1         135 YVKIEPNLP---SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYP  211 (470)
T ss_dssp             EEESSTTSC---CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSC
T ss_pred             eEEECCCCc---eeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCC
Confidence            999999998   66654321                   11234679999999999875433211               


Q ss_pred             --------C-----CCceEEEEEecCCCceee-e--EEEcC----CCCCcccCCcCceECcCCc-EEEEEeCCCCe--ee
Q 008927          270 --------W-----DKAELWVGYISENGDVYK-R--VCVAG----FDPTIVESPTEPKWSSKGE-LFFVTDRKNGF--WN  326 (548)
Q Consensus       270 --------~-----~~~~L~v~~~~~~g~~~~-~--~~l~~----~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~--~~  326 (548)
                              .     ....++++++.. +.... .  .....    ...+  ..+..+.|.++++ +++..++..+.  ..
T Consensus       212 ~~~~~~~~~~g~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~w~~~~~~~~~~~~r~~~~~~~~  288 (470)
T d2bgra1         212 KTVRVPYPKAGAVNPTVKFFVVNTDS-LSSVTNATSIQITAPASMLIGD--HYLCDVTWATQERISLQWLRRIQNYSVMD  288 (470)
T ss_dssp             EEEEEECCBTTSCCCEEEEEEEEGGG-CCSSSCCCEEEECCCHHHHTSC--EEEEEEEEEETTEEEEEEEESSTTEEEEE
T ss_pred             eeeeeccccccccCCcceEEEEECCC-cceeeeccccccCCccccCCCC--ceEEEEEEcCCCceeEEEeeccCCceEEE
Confidence                    0     012455666553 21100 0  00000    0001  2334688999999 44456663333  35


Q ss_pred             EEEEeccCCeeEeeccc-ccccCCCcccccC--cceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCcee
Q 008927          327 LHKWIESNNEVLAIYSL-DAEFSRPLWVFGI--NSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDI  403 (548)
Q Consensus       327 Ly~~d~~~g~~~~l~~~-~~d~~~p~w~~~~--~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~  403 (548)
                      ++.+|..+++...+... ........|+...  ....+.+  ..++.+++....+|..+||+++.+++..++|+.+...+
T Consensus       289 ~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v  366 (470)
T d2bgra1         289 ICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL--DGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEV  366 (470)
T ss_dssp             EEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT--TSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCE
T ss_pred             EEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeee--cCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeE
Confidence            67778778877666421 1111122333211  1112221  13345666777889999999999998999998765444


Q ss_pred             Eee-eecCCEEEEEEecCC-C--CCeEEEEEcCCCc
Q 008927          404 DNI-TLGNDCLFVEGASGV-E--PSSVAKVTLDDHK  435 (548)
Q Consensus       404 ~~~-s~d~~~l~~~~ss~~-~--p~~l~~~d~~~~~  435 (548)
                      ..+ +.+++.++|+++... .  ..+||++++.++.
T Consensus       367 ~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~  402 (470)
T d2bgra1         367 IGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYT  402 (470)
T ss_dssp             EEEEEECSSEEEEEESCGGGCTTCBEEEEEETTCTT
T ss_pred             EEEEEECCCEEEEEEecCCCCcceEEEEEEECCCCC
Confidence            444 778899999876432 2  3479999998654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.5e-15  Score=155.37  Aligned_cols=315  Identities=14%  Similarity=0.137  Sum_probs=189.2

Q ss_pred             ccCceEEcC-CCcEEEEEecCC--C-CCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCC
Q 008927           90 RLGGTAVDG-HGRLIWLESRPT--E-AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ  165 (548)
Q Consensus        90 ~~~~~~~sp-g~~i~~~~~~~~--e-~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~  165 (548)
                      ......+|| |+.|++......  . .....++..+... +..++|++..... ..+   .-..|+|||+.|+|+.  ++
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~-~~~~~l~~~~~~~-~~l---~~~~wSPDG~~iafv~--~~  134 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH-GDPQSLDPPEVSN-AKL---QYAGWGPKGQQLIFIF--EN  134 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS-CCCEECCCTTCCS-CCC---SBCCBCSSTTCEEEEE--TT
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC-CceeeccCccCCc-ccc---ceeeeccCCceEEEEe--cc
Confidence            456678999 888887653210  0 1122444444432 4677887543211 111   1147999999999998  66


Q ss_pred             eEEEEeCCCCCCCceecCCCCCCCCc---------------eecceeeCCCCCEEEEEEeccCC----------------
Q 008927          166 RLYKHSIDSKDSSPLPITPDYGEPLV---------------SYADGIFDPRFNRYVTVREDRRQ----------------  214 (548)
Q Consensus       166 ~Ly~~~~~~~~~~~~~lT~~~~~~~~---------------~~~~~~~SpDG~~i~~v~~~~~~----------------  214 (548)
                      +||.++..+  ++..+||........               ....+.|||||++|+|.+.+...                
T Consensus       135 nl~~~~~~~--~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~  212 (465)
T d1xfda1         135 NIYYCAHVG--KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPT  212 (465)
T ss_dssp             EEEEESSSS--SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCC
T ss_pred             eEEEEecCC--CceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccce
Confidence            899999987  777888765211100               01245699999999998744210                


Q ss_pred             ---------CCCCceeEEEEEECCCCCccCcEEeeec------CCc-eeeeEECCCCCEEEEEEecCCCCCCCCceEEEE
Q 008927          215 ---------DALNSTTEIVAIALNGQNIQEPKVLVSG------SDF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG  278 (548)
Q Consensus       215 ---------~~~~~~~~l~~idl~~g~~~~~~~L~~~------~~~-~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~  278 (548)
                               +..+....|+++|++++.   .+.+...      .+. .....|+||++.++ ...++..   ....|+++
T Consensus       213 ~~~~~Yp~~G~~np~~~l~v~d~~~~~---~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~-~~~nR~q---~~~~i~~~  285 (465)
T d1xfda1         213 VKPYHYPKAGSENPSISLHVIGLNGPT---HDLEMMPPDDPRMREYYITMVKWATSTKVAV-TWLNRAQ---NVSILTLC  285 (465)
T ss_dssp             CEEEECCBTTSCCCEEEEEEEESSSSC---CCEECCCCCCGGGSSEEEEEEEESSSSEEEE-EEEETTS---CEEEEEEE
T ss_pred             eeeeeccccCCCCCceeEEEEecCCCc---EEEEEeccCcCccccceeeeeEEcCCCeEEE-EEEcccc---ccceEEEE
Confidence                     012345689999998876   4333211      222 35678999987443 4333321   34678889


Q ss_pred             EecCCCceeeeEEEcCC-CCCcccCCcCceECcCCc-EEEE--EeCCCCeeeEEEEec-------cCCeeEeeccccccc
Q 008927          279 YISENGDVYKRVCVAGF-DPTIVESPTEPKWSSKGE-LFFV--TDRKNGFWNLHKWIE-------SNNEVLAIYSLDAEF  347 (548)
Q Consensus       279 ~~~~~g~~~~~~~l~~~-~~~~~~~~~~~~wspDG~-L~~~--sd~~~g~~~Ly~~d~-------~~g~~~~l~~~~~d~  347 (548)
                      |... |+..  .++... +.........|.|++||+ ++|+  +++ +|+.+||.+.+       .++..++||..+-++
T Consensus       286 d~~t-g~~~--~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~-~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V  361 (465)
T d1xfda1         286 DATT-GVCT--KKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ-GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV  361 (465)
T ss_dssp             ETTT-CCEE--EEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC-SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE
T ss_pred             cCCC-CcEE--EEEEEcCCceEeccCCceeEccCCCeeEEEEeeee-cccCceEEEEeccccccCCCceeEEeccCCceE
Confidence            9874 6532  222211 101001235689999999 8776  455 67777777754       233456777542221


Q ss_pred             CCCcccccCcceeeeeecCCCCEEEEEEEeC--CeEEEEEEECCCCceE-eecCC---Ccee--EeeeecCCEEEEEEec
Q 008927          348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQN--GRSYLGILDDFGHSLS-LLDIP---FTDI--DNITLGNDCLFVEGAS  419 (548)
Q Consensus       348 ~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~--g~~~L~~~dl~~g~~~-~l~~~---~~~~--~~~s~d~~~l~~~~ss  419 (548)
                      ..        ...+.   ++++.|||+++.+  +..+||+++++++..+ .|+..   ....  ..+++++++++..+++
T Consensus       362 ~~--------i~~~d---~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~  430 (465)
T d1xfda1         362 TK--------ILAYD---EKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEG  430 (465)
T ss_dssp             EE--------EEEEE---TTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred             EE--------EEEEc---CCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeec
Confidence            11        12233   3778999998754  5789999999877543 44422   1122  2348899999988888


Q ss_pred             CCCCCeEEEEEcCCCce
Q 008927          420 GVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       420 ~~~p~~l~~~d~~~~~~  436 (548)
                      ++.|. +.+++..+++.
T Consensus       431 ~~~P~-~~~~~~~~~~~  446 (465)
T d1xfda1         431 PGVPM-VTVHNTTDKKK  446 (465)
T ss_dssp             SSSCC-EEEEETTTCCE
T ss_pred             CCCCe-EEEEECCCCCE
Confidence            87665 66777666653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.64  E-value=3.1e-14  Score=147.90  Aligned_cols=318  Identities=8%  Similarity=-0.002  Sum_probs=190.0

Q ss_pred             CCccCceEEcC-CCcEEEEEecCC---CCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCC
Q 008927           88 SKRLGGTAVDG-HGRLIWLESRPT---EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK  163 (548)
Q Consensus        88 ~~~~~~~~~sp-g~~i~~~~~~~~---e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~  163 (548)
                      ...+..+++|| |+.|+|......   -.....++.++..+ ++.++++..+-.+.       ...|+|||..|+|..  
T Consensus        61 ~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~-~~~~~l~~~~~~~~-------~~~~SPDG~~ia~~~--  130 (470)
T d2bgra1          61 GHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK-RQLITEERIPNNTQ-------WVTWSPVGHKLAYVW--  130 (470)
T ss_dssp             SSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-TEECCSSCCCTTEE-------EEEECSSTTCEEEEE--
T ss_pred             cCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCC-CcccccccCCcccc-------ccccccCcceeeEee--
Confidence            35678899999 999999863211   02234566666553 46677765432222       247999999999987  


Q ss_pred             CCeEEEEeCCCCCCCceecCCCCCCCC---------------ceecceeeCCCCCEEEEEEeccCC--------------
Q 008927          164 DQRLYKHSIDSKDSSPLPITPDYGEPL---------------VSYADGIFDPRFNRYVTVREDRRQ--------------  214 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~---------------~~~~~~~~SpDG~~i~~v~~~~~~--------------  214 (548)
                      +.+||+++..+  ++..+++.......               .....+.|||||++|+|.+.+...              
T Consensus       131 ~~~l~~~~~~~--g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~  208 (470)
T d2bgra1         131 NNDIYVKIEPN--LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL  208 (470)
T ss_dssp             TTEEEEESSTT--SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTC
T ss_pred             cccceEEECCC--CceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCC
Confidence            66899999988  77777776421100               112346699999999998644210              


Q ss_pred             -------------CCCCceeEEEEEECCCCCccCc---EEe------eecCCceeeeEECCCCCEEEEEEecCCCCCCCC
Q 008927          215 -------------DALNSTTEIVAIALNGQNIQEP---KVL------VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (548)
Q Consensus       215 -------------~~~~~~~~l~~idl~~g~~~~~---~~L------~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~  272 (548)
                                   ........++++++.++.....   ...      ..+......+.|+++++.+++......+  +..
T Consensus       209 ~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~--~~~  286 (470)
T d2bgra1         209 QYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN--YSV  286 (470)
T ss_dssp             SSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT--EEE
T ss_pred             CCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCC--ceE
Confidence                         0012345788888887752100   000      0111224567899999755543322221  111


Q ss_pred             ceEEEEEecCCCceeee------EEEcCCCCCcccCCcCceECcCCc--EEEEEeCCCCeeeEEEEeccCCeeEeecccc
Q 008927          273 AELWVGYISENGDVYKR------VCVAGFDPTIVESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNEVLAIYSLD  344 (548)
Q Consensus       273 ~~L~v~~~~~~g~~~~~------~~l~~~~~~~~~~~~~~~wspDG~--L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~  344 (548)
                      ..++.+|.. .|.....      ......... ......+.|++++.  +++.+++ +|+.+||+++.++++.+.|+...
T Consensus       287 ~~~~~~d~~-tg~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~s~~-dg~~~ly~~~~~g~~~~~lt~g~  363 (470)
T d2bgra1         287 MDICDYDES-SGRWNCLVARQHIEMSTTGWVG-RFRPSEPHFTLDGNSFYKIISNE-EGYRHICYFQIDKKDCTFITKGT  363 (470)
T ss_dssp             EEEEEEETT-TTEEEECGGGCEEEECSSSCSS-SSSCCCCEECTTSSEEEEEEECT-TSCEEEEEEETTCSCCEESCCSS
T ss_pred             EEEEEecCC-CCcEEEEEEEeeeeeeccceee-cccCCCceeeecCCCcEEEEecc-CcCceeEEEeccCCceeeeccCC
Confidence            234444443 2331110      000110000 01234678888876  4556777 89999999999888888888543


Q ss_pred             cccCCCcccccCcceeeeeecCCCCEEEEEEEeC----CeEEEEEEECCCC-ceEeecCC----CceeE--eeeecCCEE
Q 008927          345 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN----GRSYLGILDDFGH-SLSLLDIP----FTDID--NITLGNDCL  413 (548)
Q Consensus       345 ~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~----g~~~L~~~dl~~g-~~~~l~~~----~~~~~--~~s~d~~~l  413 (548)
                      .++..        .+.+     +++.|||++...    +..+||++++.++ +.+.|+..    ...+.  .+|+|++++
T Consensus       364 ~~v~~--------~~~~-----d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~  430 (470)
T d2bgra1         364 WEVIG--------IEAL-----TSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYY  430 (470)
T ss_dssp             SCEEE--------EEEE-----CSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEE
T ss_pred             eeEEE--------EEEE-----CCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEE
Confidence            22211        0122     678899887632    4568999999875 46666532    22232  348999999


Q ss_pred             EEEEecCCCCCeEEEEEcCCCce
Q 008927          414 FVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       414 ~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      +..+++++.|. +.+++..+++.
T Consensus       431 ~~~~s~~~~P~-~~l~~~~~g~~  452 (470)
T d2bgra1         431 QLRCSGPGLPL-YTLHSSVNDKG  452 (470)
T ss_dssp             EEEECSBSSCE-EEEEETTTTEE
T ss_pred             EEEecCCCCCe-EEEEECCCCCE
Confidence            99999888876 45667666663

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.61  E-value=1.1e-14  Score=139.59  Aligned_cols=252  Identities=15%  Similarity=0.122  Sum_probs=163.1

Q ss_pred             ceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC-----CeE
Q 008927           93 GTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD-----QRL  167 (548)
Q Consensus        93 ~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~-----~~L  167 (548)
                      .|-++ |++|+|+..     |  .||+++.++ +++++||..+..+       ....|+|||++|+|+..++     .+|
T Consensus         7 sPdi~-G~~v~f~~~-----~--dl~~~d~~~-g~~~~Lt~~~~~~-------~~p~~SPDG~~iaf~~~~~~~~~~~~i   70 (281)
T d1k32a2           7 NPDIH-GDRIIFVCC-----D--DLWEHDLKS-GSTRKIVSNLGVI-------NNARFFPDGRKIAIRVMRGSSLNTADL   70 (281)
T ss_dssp             EEEEE-TTEEEEEET-----T--EEEEEETTT-CCEEEEECSSSEE-------EEEEECTTSSEEEEEEEESTTCCEEEE
T ss_pred             CCCCC-CCEEEEEeC-----C--cEEEEECCC-CCEEEEecCCCcc-------cCEEECCCCCEEEEEEeeCCCCCceEE
Confidence            45566 999999862     3  599888775 6899998754322       2468999999999986432     379


Q ss_pred             EEEeCCCCCCCceecCCCCCC---CCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC
Q 008927          168 YKHSIDSKDSSPLPITPDYGE---PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD  244 (548)
Q Consensus       168 y~~~~~~~~~~~~~lT~~~~~---~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~  244 (548)
                      |++++.+  ++.++||.....   .......+.|+|||+.|+|......   ......++.++.+++.   .+.+..+. 
T Consensus        71 ~~~~~~~--g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~-  141 (281)
T d1k32a2          71 YFYNGEN--GEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQP---FSSMTCLYRVENDGIN---FVPLNLGP-  141 (281)
T ss_dssp             EEEETTT--TEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSS---STTCCEEEEEEGGGTE---EEECCSCS-
T ss_pred             EEEEecC--CceEEeeecCCCccCccccccccccCCCCCEEEEEEccCC---CccceeeeeecCCCce---eEEecCCc-
Confidence            9999998  889999875310   0011235679999999998643321   1234578888988886   55555443 


Q ss_pred             ceeeeEECCCCCEEEEEEecCCCC---CC-CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeC
Q 008927          245 FYAFPRMDPRGERMAWIEWHHPNM---PW-DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR  320 (548)
Q Consensus       245 ~~~~p~~SPDGk~La~~~~~~~~~---p~-~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~  320 (548)
                        ..+.|++||+++++........   .. ......+.... .+.   ...+....    .....+.|+++. +++..+.
T Consensus       142 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~----~~~~~~~~~~~~-~~~~~~~  210 (281)
T d1k32a2         142 --ATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVN-SGA---FKKIVDMS----THVSSPVIVGHR-IYFITDI  210 (281)
T ss_dssp             --CSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEE-TTE---EEEEECCS----SCCEEEEEETTE-EEEEECT
T ss_pred             --cceeeecCCCeEEEeeccccceeeeeccCCcceeeeecc-ccc---eeeccCCc----cccceeeeeccc-cceeccc
Confidence              2356788888887765322211   00 11222233332 122   22223222    345567777653 7777777


Q ss_pred             CCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecC
Q 008927          321 KNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI  398 (548)
Q Consensus       321 ~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~  398 (548)
                       .+..+||++++++++.++|+... +...         ..++|   |+++|+|..  ++  .||++|+++|+.++|+.
T Consensus       211 -~~~~~l~~~d~~g~~~~~lt~~~-~~~~---------~~~Sp---DG~~I~f~~--~~--~l~~~d~~~g~~~~i~~  270 (281)
T d1k32a2         211 -DGFGQIYSTDLDGKDLRKHTSFT-DYYP---------RHLNT---DGRRILFSK--GG--SIYIFNPDTEKIEKIEI  270 (281)
T ss_dssp             -TSSCEEEEEETTSCSCEECCCCC-SSCE---------EEEEE---SSSCEEEEE--TT--EEEEECTTTCCEEECCC
T ss_pred             -ccccceEEEeCCCCceEEeecCC-Cccc---------ccCcC---CCCEEEEEe--CC--EEEEEECCCCCEEEecc
Confidence             78899999999999999988431 1111         12444   899998854  33  59999999999999875

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.51  E-value=6.6e-13  Score=130.93  Aligned_cols=160  Identities=9%  Similarity=-0.001  Sum_probs=121.0

Q ss_pred             eeEE-ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRI-FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~-~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      .|+| ||+.|+|.+  .++||+.++.+  +..++++..     .++..+.|||||+.|++...+.       ...|+++|
T Consensus         9 ~fSP~dG~~~a~~~--~g~v~v~d~~~--~~~~~~~~~-----~~v~~~~~spDg~~l~~~~~~~-------g~~v~v~d   72 (360)
T d1k32a3           9 DFSPLDGDLIAFVS--RGQAFIQDVSG--TYVLKVPEP-----LRIRYVRRGGDTKVAFIHGTRE-------GDFLGIYD   72 (360)
T ss_dssp             EEEECGGGCEEEEE--TTEEEEECTTS--SBEEECSCC-----SCEEEEEECSSSEEEEEEEETT-------EEEEEEEE
T ss_pred             cccCCCCCEEEEEE--CCeEEEEECCC--CcEEEccCC-----CCEEEEEECCCCCEEEEEEcCC-------CCEEEEEE
Confidence            6899 899999998  67899999987  778888653     3577889999999999876553       24689999


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      +++++   .+++..........+|||||++|++...        ...+++.+++. ++.  ...+....    ..+..+.
T Consensus        73 ~~~~~---~~~~~~~~~~v~~~~~spdg~~l~~~~~--------~~~~~~~~~~~-~~~--~~~~~~~~----~~~~~~~  134 (360)
T d1k32a3          73 YRTGK---AEKFEENLGNVFAMGVDRNGKFAVVAND--------RFEIMTVDLET-GKP--TVIERSRE----AMITDFT  134 (360)
T ss_dssp             TTTCC---EEECCCCCCSEEEEEECTTSSEEEEEET--------TSEEEEEETTT-CCE--EEEEECSS----SCCCCEE
T ss_pred             CCCCc---EEEeeCCCceEEeeeecccccccceecc--------ccccccccccc-cce--eeeeeccc----ccccchh
Confidence            99998   8888877766778899999999997662        35788889874 442  23333332    4567899


Q ss_pred             ECcCCc-EEEEEeC------CCCeeeEEEEeccCCeeEeecc
Q 008927          308 WSSKGE-LFFVTDR------KNGFWNLHKWIESNNEVLAIYS  342 (548)
Q Consensus       308 wspDG~-L~~~sd~------~~g~~~Ly~~d~~~g~~~~l~~  342 (548)
                      |+|||+ |++....      ......++.++..+++...++.
T Consensus       135 ~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~  176 (360)
T d1k32a3         135 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT  176 (360)
T ss_dssp             ECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC
T ss_pred             hccceeeeeeeccccccceeeccccceeeeccccCceeeecc
Confidence            999999 7776432      1334568889998888777663

>d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: DPP6 catalytic domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.9e-15  Score=142.42  Aligned_cols=80  Identities=16%  Similarity=0.148  Sum_probs=65.8

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccccc-Ccc--ChHHHHHHhcCcEEEEeCCCCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GIL--NLSIQYWTSRGWAFVDVNYGGSTGL  538 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~-~~~--~~~~Q~~asrGyaVl~~NyRGStGy  538 (548)
                      |..+++.  ||.+|++|||+|++  |+  +++++|+||++||||++... ..|  .+..|+||++||+|+.+|||||+||
T Consensus         4 ~~~~i~~--dg~~l~~~l~~P~~--~~--~~~k~Pviv~~HGGp~~~~~~~~~~~~~~~~~la~~G~~vv~~d~rGs~~~   77 (258)
T d1xfda2           4 EYRDIEI--DDYNLPMQILKPAT--FT--DTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQ   77 (258)
T ss_dssp             CBCCEEE--TTEEECCBEEBCSS--CC--SSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSS
T ss_pred             EEEEEee--CCeEEEEEEEECCC--cC--CCCceeEEEEEcCCccccCcCCCcCcchHHHHHhcCCcEEEEecccccccc
Confidence            3333444  89999999999976  65  47899999999999987653 344  3567899999999999999999999


Q ss_pred             Chhhhhccc
Q 008927          539 SSVPSTSIF  547 (548)
Q Consensus       539 G~~f~~ai~  547 (548)
                      |.+|.++++
T Consensus        78 g~~~~~~~~   86 (258)
T d1xfda2          78 GTKLLHEVR   86 (258)
T ss_dssp             HHHHHHTTT
T ss_pred             chhHhhhhh
Confidence            999988765

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.46  E-value=8.5e-13  Score=130.11  Aligned_cols=300  Identities=10%  Similarity=0.050  Sum_probs=175.8

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L  167 (548)
                      ..+..++++| |+.+++...+   +|. .|+.++..+ ++.++++.....+.       ..+|+|++..|++.. .++.+
T Consensus        43 ~~v~~~~~spDg~~l~~~~~~---~g~-~v~v~d~~~-~~~~~~~~~~~~v~-------~~~~spdg~~l~~~~-~~~~~  109 (360)
T d1k32a3          43 LRIRYVRRGGDTKVAFIHGTR---EGD-FLGIYDYRT-GKAEKFEENLGNVF-------AMGVDRNGKFAVVAN-DRFEI  109 (360)
T ss_dssp             SCEEEEEECSSSEEEEEEEET---TEE-EEEEEETTT-CCEEECCCCCCSEE-------EEEECTTSSEEEEEE-TTSEE
T ss_pred             CCEEEEEECCCCCEEEEEEcC---CCC-EEEEEECCC-CcEEEeeCCCceEE-------eeeecccccccceec-ccccc
Confidence            5678899999 8899888754   343 354454443 46777765433322       236888898888876 45688


Q ss_pred             EEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCC-CCCCceeEEEEEECCCCCccCcEEeeecCCce
Q 008927          168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-DALNSTTEIVAIALNGQNIQEPKVLVSGSDFY  246 (548)
Q Consensus       168 y~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~-~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~  246 (548)
                      +..++++  ++...+....   ......+.|+|||+.|++...+... ........++++|+.+++   ...++......
T Consensus       110 ~~~~~~~--~~~~~~~~~~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~---~~~~~~~~~~~  181 (360)
T d1k32a3         110 MTVDLET--GKPTVIERSR---EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAATTENSHD  181 (360)
T ss_dssp             EEEETTT--CCEEEEEECS---SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECSCSSSBE
T ss_pred             ccccccc--cceeeeeecc---cccccchhhccceeeeeeeccccccceeeccccceeeeccccCc---eeeeccccccc
Confidence            8889887  5655554331   2346678999999999987544321 112235678899999987   77777666566


Q ss_pred             eeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEE-eCCCCe
Q 008927          247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT-DRKNGF  324 (548)
Q Consensus       247 ~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~s-d~~~g~  324 (548)
                      ..+.|||||++|++.+.+....-|+.. .+........   ....+....    .....+.|++|++ +.... +.....
T Consensus       182 ~~~~~spdg~~l~~~s~~~~~~~~d~~-~~~~~~~~~~---~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~  253 (360)
T d1k32a3         182 YAPAFDADSKNLYYLSYRSLDPSPDRV-VLNFSFEVVS---KPFVIPLIP----GSPNPTKLVPRSMTSEAGEYDLNDMY  253 (360)
T ss_dssp             EEEEECTTSCEEEEEESCCCCCEECSS-SSCEECCSCB---EEEEEESST----TCCCGGGCCCGGGSCCCCCCCCTTGG
T ss_pred             ccccccCCCCEEEEEeCCCceEccccc-ccceeecccc---ceEEEeccc----CccccceECCCcCcccccceeecccc
Confidence            778999999999988743322112211 1111111111   122232222    3345678999988 54332 221223


Q ss_pred             eeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCceeE
Q 008927          325 WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDID  404 (548)
Q Consensus       325 ~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~  404 (548)
                      ..++.++..+++.+.+.......   .+      +.+..   .+....+.........|+++|+++++.+.+..   .+.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~---~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~---~v~  318 (360)
T d1k32a3         254 KRSSPINVDPGDYRMIIPLESSI---LI------YSVPV---HGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN---NLT  318 (360)
T ss_dssp             GGCEECSCCCBCEEEEEECSSEE---EE------EECCC---CCSHHHHHHCCCCCEEEEEEETTTCCEEEEEE---EEE
T ss_pred             cceeecccCcCceeEeeecCCCc---eE------EEEEe---cCCCeeEEEecCCCCEEEEEECCCCeEEEecC---CcC
Confidence            45777777777666554221100   00      00110   11111111122345678889999888776543   233


Q ss_pred             e--eeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          405 N--ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       405 ~--~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      .  +++|+++|++....    ..|+++|++.++.
T Consensus       319 ~~~~SpDG~~l~~~~~D----g~i~v~d~~~~~~  348 (360)
T d1k32a3         319 DLRLSADRKTVMVRKDD----GKIYTFPLEKPED  348 (360)
T ss_dssp             EEEECTTSCEEEEEETT----SCEEEEESSCTTS
T ss_pred             EEEECCCCCEEEEEECC----CeEEEEECCCCCc
Confidence            3  37899988765432    5799999987763

>d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: DPP6 catalytic domain-like
domain: Dipeptidyl peptidase IV/CD26, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.46  E-value=5.6e-14  Score=134.14  Aligned_cols=83  Identities=18%  Similarity=0.194  Sum_probs=71.5

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCc---cChHHHHHHhcCcEEEEeCCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---LNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~---~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      +.|.|.|... ||.+++++||+|+|  |+  ++||||+||++||||.++....   +++..++++++||+|+.+||||+.
T Consensus         2 ~~~~~~~~~~-~~~~~~~~l~lP~~--~~--~~kk~P~iv~~HGGp~~~~~~~~~~~~~~~~~~a~~g~~V~~~d~rg~~   76 (258)
T d2bgra2           2 PSKKLDFIIL-NETKFWYQMILPPH--FD--KSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSG   76 (258)
T ss_dssp             CEEEEEEEEE-TTEEEEEEEEECTT--CC--TTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCS
T ss_pred             CceeEEEEEe-CCcEEEEEEEECCC--cC--CCCCeeEEEEEcCCCCcccCCCccCcCHHHHHHhcCCcEEEeecccccC
Confidence            3578999998 99999999999965  65  4799999999999998876543   346677889999999999999999


Q ss_pred             CCChhhhhccc
Q 008927          537 GLSSVPSTSIF  547 (548)
Q Consensus       537 GyG~~f~~ai~  547 (548)
                      ++|.+|.++++
T Consensus        77 ~~~~~~~~~~~   87 (258)
T d2bgra2          77 YQGDKIMHAIN   87 (258)
T ss_dssp             SSCHHHHGGGT
T ss_pred             CcchHHHHhhh
Confidence            99999988775

>d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acylamino-acid-releasing enzyme, C-terminal donain
domain: Acylamino-acid-releasing enzyme, C-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.46  E-value=4.1e-14  Score=135.32  Aligned_cols=84  Identities=23%  Similarity=0.288  Sum_probs=74.4

Q ss_pred             CccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          457 YFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       457 ~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      .+...+.|+|++. ||.+|++|||.|++.      .++.|+||++||||+++....|....++|+++||+|+.+||||+.
T Consensus         8 ~~~~~~~v~~~s~-dG~~i~~~l~~p~~~------~~~~Pviv~~HGG~~~~~~~~~~~~~~~la~~G~~v~~~d~r~~~   80 (260)
T d2hu7a2           8 SIAGSRLVWVESF-DGSRVPTYVLESGRA------PTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGST   80 (260)
T ss_dssp             TEEEEEEEEEECT-TSCEEEEEEEEETTS------CSSEEEEEEECSSSSCCCCSSCCHHHHHHHHHTCEEEEECCTTCS
T ss_pred             ccCceEEEEEECC-CCCEEEEEEEeCCCC------CCCceEEEEECCCCccCCCccccHHHHHHHhhccccccceeeecc
Confidence            3456788999998 999999999999652      356799999999999998889999999999999999999999999


Q ss_pred             CCChhhhhccc
Q 008927          537 GLSSVPSTSIF  547 (548)
Q Consensus       537 GyG~~f~~ai~  547 (548)
                      |+|.++....+
T Consensus        81 ~~g~~~~~~~~   91 (260)
T d2hu7a2          81 GYGEEWRLKII   91 (260)
T ss_dssp             SSCHHHHHTTT
T ss_pred             ccccccccccc
Confidence            99999887653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.39  E-value=7.8e-10  Score=113.14  Aligned_cols=309  Identities=12%  Similarity=0.076  Sum_probs=183.9

Q ss_pred             CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCC-CCCCccccceeeCCeeeEEECCEEEEEeCCCC----eEEEEeCC
Q 008927           99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITP-KEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ----RLYKHSID  173 (548)
Q Consensus        99 g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~-~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~----~Ly~~~~~  173 (548)
                      |++.||....+. ..+..+++..... ++.+-|+. .... ...-...++-+.+|++++++|+.+.+|    .|+.+|+.
T Consensus        83 g~~y~~~~~~~~-~~~~~~~~~~~~~-~~~evllD~n~la-~~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~  159 (430)
T d1qfma1          83 GKRYFYFYNTGL-QNQRVLYVQDSLE-GEARVFLDPNILS-DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD  159 (430)
T ss_dssp             TTEEEEEEECSS-CSSCEEEEESSSS-SCCEEEECGGGGC-SSSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred             CCEEEEEEecCC-CccceEEeccccC-CCeeeecchhhhc-ccccceecceEecCCCCEEEEEeccccCchheeEEeccC
Confidence            777777654432 3455666665442 23333332 1111 111122344456778889999875443    78999998


Q ss_pred             CCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCC-------CCCceeEEEEEECCCCCccCcEEeeecCC--
Q 008927          174 SKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-------ALNSTTEIVAIALNGQNIQEPKVLVSGSD--  244 (548)
Q Consensus       174 ~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~-------~~~~~~~l~~idl~~g~~~~~~~L~~~~~--  244 (548)
                      +  ++....+-.    ..++..+.|++|++.|+|+..+..+.       .......+|+..+.+... +...+.+..+  
T Consensus       160 t--g~~~~~~i~----~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~-~d~~v~~e~d~~  232 (430)
T d1qfma1         160 G--AKELPDVLE----RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS-EDILCAEFPDEP  232 (430)
T ss_dssp             T--TEEEEEEEE----EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG-GCEEEECCTTCT
T ss_pred             c--ceecccccc----cccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCcc-ccccccccccCC
Confidence            7  554322211    23457788999999999986543210       112345788888887642 1345554332  


Q ss_pred             -ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc-e---eeeEEEcCCCCCcccCCcCceECcCCc-EEEEE
Q 008927          245 -FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-V---YKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT  318 (548)
Q Consensus       245 -~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~-~---~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~s  318 (548)
                       ++.....|+||++|.........   ....+|++++..... +   .....+....    ...... ...+|. +|+++
T Consensus       233 ~~~~~~~~s~d~~~l~i~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~T  304 (430)
T d1qfma1         233 KWMGGAELSDDGRYVLLSIREGCD---PVNRLWYCDLQQESNGITGILKWVKLIDNF----EGEYDY-VTNEGTVFTFKT  304 (430)
T ss_dssp             TCEEEEEECTTSCEEEEEEECSSS---SCCEEEEEEGGGSSSSSCSSCCCEEEECSS----SSCEEE-EEEETTEEEEEE
T ss_pred             ceEEeeeccCCcceeeEEeeccCC---ccEEEEEeeCCCcccccccccceeEeeccc----ccceEE-EecCCceeeccc
Confidence             34556789999988755533221   245789999864211 1   0112222211    111112 223455 88888


Q ss_pred             eCCCCeeeEEEEeccCCe---eEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEe
Q 008927          319 DRKNGFWNLHKWIESNNE---VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL  395 (548)
Q Consensus       319 d~~~g~~~Ly~~d~~~g~---~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~  395 (548)
                      +.+.....|+.++++...   .+.|.+...      +..-...+..     .++.|++...+++..+|.++++++++...
T Consensus       305 n~~a~~~~L~~~~~~~~~~~~w~~vi~~~~------~~~~~~~~~~-----~~~~lvl~~~~~~~~~l~v~~~~~~~~~~  373 (430)
T d1qfma1         305 NRHSPNYRLINIDFTDPEESKWKVLVPEHE------KDVLEWVACV-----RSNFLVLCYLHDVKNTLQLHDLATGALLK  373 (430)
T ss_dssp             CTTCTTCEEEEEETTBCCGGGCEEEECCCS------SCEEEEEEEE-----TTTEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             CcccccceeEEecCCCCccccceEEecccC------cceeeeEEEE-----ECCEEEEEEEcCCEeEEEEEECCCCcEEE
Confidence            875567889999887643   244443211      1000001112     46788888889999999999999998877


Q ss_pred             ecCC-CceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          396 LDIP-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       396 l~~~-~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      +..+ ...+.++  ..++..++|..++..+|+.+|.+|+++++.
T Consensus       374 ~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         374 IFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             ecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            7543 3445555  345678899999999999999999998875

>d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Prolyl oligopeptidase, C-terminal domain
domain: Prolyl oligopeptidase, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.13  E-value=3.3e-11  Score=115.02  Aligned_cols=81  Identities=12%  Similarity=0.144  Sum_probs=69.3

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccCh-HHHHHHhcCcEEEEeCCCCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWTSRGWAFVDVNYGGSTGL  538 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~-~~Q~~asrGyaVl~~NyRGStGy  538 (548)
                      ++|.|+|+++ ||.+|+|+|++|++  ++  +++++|+||++||||+++....+.. ..++++.+||+++.++++++..+
T Consensus         6 ~~e~v~~~s~-DG~~i~~~l~~P~~--~~--~~~~~P~iv~~HGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (280)
T d1qfma2           6 QTVQIFYPSK-DGTKIPMFIVHKKG--IK--LDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEY   80 (280)
T ss_dssp             EEEEEEEECT-TSCEEEEEEEEETT--CC--CSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTT
T ss_pred             EEEEEEEECC-CCCEEEEEEEEcCC--CC--CCCCeEEEEEECCCCcccCCCCcchhhhhhhcccceeeecccccccccc
Confidence            3588999998 99999999999975  54  3789999999999999998887765 45667789999999999999999


Q ss_pred             Chhhhhc
Q 008927          539 SSVPSTS  545 (548)
Q Consensus       539 G~~f~~a  545 (548)
                      ++.+...
T Consensus        81 ~~~~~~~   87 (280)
T d1qfma2          81 GETWHKG   87 (280)
T ss_dssp             HHHHHHT
T ss_pred             chhhhhc
Confidence            8887654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=2.5e-08  Score=96.26  Aligned_cols=264  Identities=11%  Similarity=0.062  Sum_probs=135.3

Q ss_pred             eeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      .+|+|||+.|+.....++.|.+++++.++...+.+....  .......+.|||||++|+....+.        ..+..++
T Consensus        42 la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~--~~~~p~~l~~spDg~~l~v~~~~~--------~~v~~~~  111 (333)
T d1ri6a_          42 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA--LPGSLTHISTDHQGQFVFVGSYNA--------GNVSVTR  111 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE--CSSCCSEEEECTTSSEEEEEETTT--------TEEEEEE
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc--cCCCceEEEEcCCCCEEeecccCC--------Cceeeec
Confidence            478999999988876677676655554213333332210  011233578999999976643221        2455555


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeE--EEcCCCCCcccCCcC
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV--CVAGFDPTIVESPTE  305 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~--~l~~~~~~~~~~~~~  305 (548)
                      .......................+||||++++.....       ...+++.+....+......  ...... .  .....
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~-g--~~p~~  181 (333)
T d1ri6a_         112 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-------QDRICLFTVSDDGHLVAQDPAEVTTVE-G--AGPRH  181 (333)
T ss_dssp             EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-------GTEEEEEEECTTSCEEEEEEEEEECST-T--CCEEE
T ss_pred             cccccceecccccCCCccceEEEeeecceeeeccccc-------cceeeEEEeccCCcceeeeceeeeeec-C--CCccE
Confidence            5444310011122233334456899999988765522       3467777776443311111  111111 1  22345


Q ss_pred             ceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEe---ecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEE
Q 008927          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA---IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY  382 (548)
Q Consensus       306 ~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~---l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~  382 (548)
                      ..|++++..++......+...++.++........   +...........+.   ....+.+   +++.++......+...
T Consensus       182 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~---d~~~~~~~~~~~~~~~  255 (333)
T d1ri6a_         182 MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA---ADIHITP---DGRHLYACDRTASLIT  255 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCE---EEEEECT---TSSEEEEEETTTTEEE
T ss_pred             EEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccc---eeEEEec---ccCceeeecccCCeEE
Confidence            7899999955554443566667666554443221   11111111111111   1123333   6676665554556677


Q ss_pred             EEEEECCCCceEeecC--CCceeE--eeeecCCEEEEEEecCCCCCeEEEEEcCCCceee
Q 008927          383 LGILDDFGHSLSLLDI--PFTDID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKA  438 (548)
Q Consensus       383 L~~~dl~~g~~~~l~~--~~~~~~--~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~  438 (548)
                      ++.++..++..+....  ......  .+++||++|++.. .....-.+|.+|.++|++++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~-~~~~~v~v~~id~~tG~l~~  314 (333)
T d1ri6a_         256 VFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG-QKSHHISVYEIVGEQGLLHE  314 (333)
T ss_dssp             EEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEEC-TTTCEEEEEEEETTTTEEEE
T ss_pred             EEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEE-CCCCeEEEEEEECCCCcEEE
Confidence            7777765554433321  111111  3478999876543 32333457778888887643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.07  E-value=3.7e-08  Score=93.38  Aligned_cols=238  Identities=11%  Similarity=0.059  Sum_probs=143.4

Q ss_pred             eeeEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      .+|+|||++|+.....++.|.++|+.+  ++.. .+...     .......+++||+.+++.....        ..+.++
T Consensus        37 va~spdG~~l~v~~~~~~~i~v~d~~t--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  101 (301)
T d1l0qa2          37 AVISPDGTKVYVANAHSNDVSIIDTAT--NNVIATVPAG-----SSPQGVAVSPDGKQVYVTNMAS--------STLSVI  101 (301)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEETTT--TEEEEEEECS-----SSEEEEEECTTSSEEEEEETTT--------TEEEEE
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEECCC--Cceeeeeecc-----cccccccccccccccccccccc--------ceeeec
Confidence            367788888887777778999999986  4433 33222     2234567999999877653321        367888


Q ss_pred             ECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCc
Q 008927          227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (548)
Q Consensus       227 dl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~  306 (548)
                      ++.+++   ...............++|||+.++.....       ...+.+.+... +.  ....+...     ......
T Consensus       102 ~~~~~~---~~~~~~~~~~~~~~~~~~dg~~~~~~~~~-------~~~~~~~~~~~-~~--~~~~~~~~-----~~~~~~  163 (301)
T d1l0qa2         102 DTTSNT---VAGTVKTGKSPLGLALSPDGKKLYVTNNG-------DKTVSVINTVT-KA--VINTVSVG-----RSPKGI  163 (301)
T ss_dssp             ETTTTE---EEEEEECSSSEEEEEECTTSSEEEEEETT-------TTEEEEEETTT-TE--EEEEEECC-----SSEEEE
T ss_pred             ccccce---eeeeccccccceEEEeecCCCeeeeeecc-------ccceeeeeccc-cc--eeeecccC-----CCceEE
Confidence            988876   44444444444567899999988755421       34577777763 33  12233332     334567


Q ss_pred             eECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927          307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (548)
Q Consensus       307 ~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~  386 (548)
                      .|+||++.+++...+.+  .++..+....+.........   .|      ....+.+   +++.+++.........|+++
T Consensus       164 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~---~g~~~~v~~~~~~~~~v~v~  229 (301)
T d1l0qa2         164 AVTPDGTKVYVANFDSM--SISVIDTVTNSVIDTVKVEA---AP------SGIAVNP---EGTKAYVTNVDKYFNTVSMI  229 (301)
T ss_dssp             EECTTSSEEEEEETTTT--EEEEEETTTTEEEEEEECSS---EE------EEEEECT---TSSEEEEEEECSSCCEEEEE
T ss_pred             Eeeccccceeeeccccc--ccccccccceeeeecccccC---Cc------ceeeccc---cccccccccccceeeeeeee
Confidence            89999995555544233  34444444554433322111   01      1123433   67777665554455678999


Q ss_pred             ECCCCceE-eecCCCceeEe--eeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          387 DDFGHSLS-LLDIPFTDIDN--ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       387 dl~~g~~~-~l~~~~~~~~~--~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      |+.+++.. .+..+. ....  +++|+++|++....   -..|.++|+++++.
T Consensus       230 D~~t~~~~~~~~~~~-~~~~va~spdg~~l~va~~~---~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         230 DTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSF---CNTVSVIDTATNTI  278 (301)
T ss_dssp             ETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEE
T ss_pred             ecCCCeEEEEEcCCC-CEEEEEEeCCCCEEEEEECC---CCeEEEEECCCCeE
Confidence            99888754 343322 2333  37888887665432   35899999988864

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.89  E-value=1.4e-06  Score=85.37  Aligned_cols=303  Identities=8%  Similarity=-0.034  Sum_probs=149.1

Q ss_pred             cCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCC------
Q 008927           91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK------  163 (548)
Q Consensus        91 ~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~------  163 (548)
                      +....++| |.++|.... ....+...+|.++... ++...-.+....        .+..|+|||++|++....      
T Consensus        23 ~~~~a~spdg~~~~~~~~-~~~~~~~~v~v~D~~t-g~~~~~~~~~~~--------~~~a~SpDG~~l~va~~~~~~~~~   92 (373)
T d2madh_          23 TNDEAPGADGRRSYINLP-AHHSAIIQQWVLDAGS-GSILGHVNGGFL--------PNPVAAHSGSEFALASTSFSRIAK   92 (373)
T ss_pred             ccccccCCCCCEEEEEcc-cccCCCceEEEEECCC-CCEEEEEeCCCC--------ccEEEcCCCCEEEEEeecCCcccc
Confidence            44566789 888866542 2234556677776542 233322222111        135899999999887632      


Q ss_pred             ---CCeEEEEeCCCCCCCceecCCCCCCCC----ceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCc
Q 008927          164 ---DQRLYKHSIDSKDSSPLPITPDYGEPL----VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (548)
Q Consensus       164 ---~~~Ly~~~~~~~~~~~~~lT~~~~~~~----~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~  236 (548)
                         ++.|.++|+.+  +++...........    .......|+|||+.+++...+.       .+.+..++..+++   .
T Consensus        93 ~~~~~~v~v~D~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-------~~~~~~~~~~~~~---~  160 (373)
T d2madh_          93 GKRTDYVEVFDPVT--FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA-------GPAVGLVVQGGSS---D  160 (373)
T ss_pred             cccceEEEEEECCC--CcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC-------CCceEEeeccCCe---E
Confidence               35688888887  55543222110000    0112457899999876654332       1345666666654   2


Q ss_pred             EEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEE
Q 008927          237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF  316 (548)
Q Consensus       237 ~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~  316 (548)
                      ......   .....++|||+.+++.. ..      ...+.+.+... ++......................+++++.+++
T Consensus       161 ~~~~~~---~~~~~~s~~g~~~~v~~-~~------dg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (373)
T d2madh_         161 DQLLSS---PTCYHIHPGAPSTFYLL-CA------QGGLAKTDHAG-GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW  229 (373)
T ss_pred             EEEecc---ceeEEEecCCCcEEEEE-cC------CCeEEEEEcCC-ceeeEEEeeeccccCccceeeeEEECCCceEEE
Confidence            222211   23456899999775443 21      34577777764 332111111110000001122345566665444


Q ss_pred             EEeCCCCeeeEEEEeccCCeeEeeccccc---ccCCCccccc-CcceeeeeecCCCCEEEEEEEe-------CCeEEEEE
Q 008927          317 VTDRKNGFWNLHKWIESNNEVLAIYSLDA---EFSRPLWVFG-INSYEIIQSHGEKNLIACSYRQ-------NGRSYLGI  385 (548)
Q Consensus       317 ~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~---d~~~p~w~~~-~~~~~~~~~~~d~~~l~~~~~~-------~g~~~L~~  385 (548)
                      .++.    ..++.++..+++...+.....   ......|..+ .....+.+   ++..+++....       .....+.+
T Consensus       230 ~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~v~~  302 (373)
T d2madh_         230 PVYS----GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK---SSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             ecCC----ceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEec---CCCeEEEecCCCceEEeecCCCeEEE
Confidence            4332    134455554444332221000   0000011111 01122332   44544433221       22346788


Q ss_pred             EECCCCceE-eecCCCceeE--eeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          386 LDDFGHSLS-LLDIPFTDID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       386 ~dl~~g~~~-~l~~~~~~~~--~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      +|..+++.. .+..+. ...  .+++||++++++....  ...|+++|+.+++.
T Consensus       303 ~d~~t~~~~~~~~~~~-~~~~~a~spDG~~~l~vt~~~--d~~v~v~D~~tg~~  353 (373)
T d2madh_         303 VTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAG--TEVLHIYDAGAGDQ  353 (373)
T ss_pred             EECCCCcEEEEecCCC-CeeEEEECCCCCEEEEEEeCC--CCeEEEEECCCCCE
Confidence            898888644 443332 222  2478998876655443  36799999998874

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.87  E-value=2e-06  Score=82.77  Aligned_cols=280  Identities=10%  Similarity=-0.019  Sum_probs=148.5

Q ss_pred             ceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEEEEe
Q 008927           93 GTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS  171 (548)
Q Consensus        93 ~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~~~  171 (548)
                      -+..+| |+.++|...     +.-.+|..+..  ...+.++.....+.       .-.|+|+|..|+ +...++.|.+.+
T Consensus        22 ~~a~~~~g~~l~~~~~-----~~v~i~~~~~~--~~~~~~~~H~~~v~-------~~~~sp~g~~la-tg~~dg~i~iwd   86 (311)
T d1nr0a1          22 VLGNTPAGDKIQYCNG-----TSVYTVPVGSL--TDTEIYTEHSHQTT-------VAKTSPSGYYCA-SGDVHGNVRIWD   86 (311)
T ss_dssp             CCEECTTSSEEEEEET-----TEEEEEETTCS--SCCEEECCCSSCEE-------EEEECTTSSEEE-EEETTSEEEEEE
T ss_pred             EEEEcCCCCEEEEEeC-----CEEEEEECCCC--ceeEEEcCCCCCEE-------EEEEeCCCCeEe-ccccCceEeeee
Confidence            457788 999888641     23334444332  22333333221111       125777776664 445677777777


Q ss_pred             CCCCCCCce--ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeee
Q 008927          172 IDSKDSSPL--PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFP  249 (548)
Q Consensus       172 ~~~~~~~~~--~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p  249 (548)
                      +..+ ....  .+...    ...+..+.|+|||+.|+...++..       ..+.++++++++.  ...+....+.+...
T Consensus        87 ~~~~-~~~~~~~~~~~----~~~v~~v~~s~d~~~l~~~~~~~~-------~~~~v~~~~~~~~--~~~l~~h~~~v~~v  152 (311)
T d1nr0a1          87 TTQT-THILKTTIPVF----SGPVKDISWDSESKRIAAVGEGRE-------RFGHVFLFDTGTS--NGNLTGQARAMNSV  152 (311)
T ss_dssp             SSST-TCCEEEEEECS----SSCEEEEEECTTSCEEEEEECCSS-------CSEEEEETTTCCB--CBCCCCCSSCEEEE
T ss_pred             eecc-ccccccccccc----cCcccccccccccccccccccccc-------ccccccccccccc--cccccccccccccc
Confidence            7652 2221  22222    124567789999999877654321       2345667777652  33444444456667


Q ss_pred             EECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEE
Q 008927          250 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHK  329 (548)
Q Consensus       250 ~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~  329 (548)
                      .|+|||+.++.....       ...|.+.++.. ++  ....+....    ..+....|+|||++++.... ++  .+.+
T Consensus       153 ~~~~~~~~~l~sgs~-------d~~i~i~d~~~-~~--~~~~~~~~~----~~i~~v~~~p~~~~l~~~~~-d~--~v~~  215 (311)
T d1nr0a1         153 DFKPSRPFRIISGSD-------DNTVAIFEGPP-FK--FKSTFGEHT----KFVHSVRYNPDGSLFASTGG-DG--TIVL  215 (311)
T ss_dssp             EECSSSSCEEEEEET-------TSCEEEEETTT-BE--EEEEECCCS----SCEEEEEECTTSSEEEEEET-TS--CEEE
T ss_pred             cccccceeeeccccc-------ccccccccccc-cc--ccccccccc----ccccccccCccccccccccc-cc--cccc
Confidence            899999975433322       24588888873 43  223333322    45677899999995555443 34  4566


Q ss_pred             EeccCCeeEeecccc--cccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eecCCCc---ee
Q 008927          330 WIESNNEVLAIYSLD--AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFT---DI  403 (548)
Q Consensus       330 ~d~~~g~~~~l~~~~--~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~~~~~---~~  403 (548)
                      ++..+++........  ...+...++   ....|.|   +++.|+ +...++  .|+++|+.+++.. .+.....   ..
T Consensus       216 ~d~~~~~~~~~~~~~~~~~~~h~~~V---~~~~~s~---~~~~l~-tgs~Dg--~v~iwd~~t~~~~~~l~~~~~~~~~~  286 (311)
T d1nr0a1         216 YNGVDGTKTGVFEDDSLKNVAHSGSV---FGLTWSP---DGTKIA-SASADK--TIKIWNVATLKVEKTIPVGTRIEDQQ  286 (311)
T ss_dssp             EETTTCCEEEECBCTTSSSCSSSSCE---EEEEECT---TSSEEE-EEETTS--EEEEEETTTTEEEEEEECCSSGGGCE
T ss_pred             cccccccccccccccccccccccccc---cccccCC---CCCEEE-EEeCCC--eEEEEECCCCcEEEEEECCCCccceE
Confidence            676666543332211  011111121   2345654   666554 444555  4677788888643 4443211   12


Q ss_pred             EeeeecCCEEEEEEecCCCCCeEEEEEc
Q 008927          404 DNITLGNDCLFVEGASGVEPSSVAKVTL  431 (548)
Q Consensus       404 ~~~s~d~~~l~~~~ss~~~p~~l~~~d~  431 (548)
                      ..+..+++.++.. +.   -+.|..+|+
T Consensus       287 ~~~~~~~~~l~s~-s~---dG~i~~wd~  310 (311)
T d1nr0a1         287 LGIIWTKQALVSI-SA---NGFINFVNP  310 (311)
T ss_dssp             EEEEECSSCEEEE-ET---TCCEEEEET
T ss_pred             EEEEecCCEEEEE-EC---CCEEEEEeC
Confidence            2334455544433 22   245666664

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.80  E-value=4.7e-07  Score=85.47  Aligned_cols=247  Identities=11%  Similarity=0.079  Sum_probs=139.1

Q ss_pred             ccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEE
Q 008927           90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY  168 (548)
Q Consensus        90 ~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly  168 (548)
                      ....+.++| |+++|.....   .++..+|-...   ++.....+.....+       +..|++++..++.....+..++
T Consensus        33 ~p~~va~spdG~~l~v~~~~---~~~i~v~d~~t---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~   99 (301)
T d1l0qa2          33 NPMGAVISPDGTKVYVANAH---SNDVSIIDTAT---NNVIATVPAGSSPQ-------GVAVSPDGKQVYVTNMASSTLS   99 (301)
T ss_dssp             SEEEEEECTTSSEEEEEEGG---GTEEEEEETTT---TEEEEEEECSSSEE-------EEEECTTSSEEEEEETTTTEEE
T ss_pred             CceEEEEeCCCCEEEEEECC---CCEEEEEECCC---Cceeeeeecccccc-------ccccccccccccccccccceee
Confidence            345678999 7777644322   35555554322   12222222211111       1245566777887777777888


Q ss_pred             EEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCcee
Q 008927          169 KHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYA  247 (548)
Q Consensus       169 ~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~  247 (548)
                      +.+..+  ++. ..+...     .......++|||+.+++.....        ..+..++..++.   ............
T Consensus       100 ~~~~~~--~~~~~~~~~~-----~~~~~~~~~~dg~~~~~~~~~~--------~~~~~~~~~~~~---~~~~~~~~~~~~  161 (301)
T d1l0qa2         100 VIDTTS--NTVAGTVKTG-----KSPLGLALSPDGKKLYVTNNGD--------KTVSVINTVTKA---VINTVSVGRSPK  161 (301)
T ss_dssp             EEETTT--TEEEEEEECS-----SSEEEEEECTTSSEEEEEETTT--------TEEEEEETTTTE---EEEEEECCSSEE
T ss_pred             eccccc--ceeeeecccc-----ccceEEEeecCCCeeeeeeccc--------cceeeeeccccc---eeeecccCCCce
Confidence            888876  433 333332     1234567999999887653321        367888888876   444443333445


Q ss_pred             eeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeee
Q 008927          248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWN  326 (548)
Q Consensus       248 ~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~  326 (548)
                      ...++||++.++... .      +...+++.+... .++  ...+...     .......|++||+ +++.... .....
T Consensus       162 ~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~-~~~--~~~~~~~-----~~~~~~~~~~~g~~~~v~~~~-~~~~~  225 (301)
T d1l0qa2         162 GIAVTPDGTKVYVAN-F------DSMSISVIDTVT-NSV--IDTVKVE-----AAPSGIAVNPEGTKAYVTNVD-KYFNT  225 (301)
T ss_dssp             EEEECTTSSEEEEEE-T------TTTEEEEEETTT-TEE--EEEEECS-----SEEEEEEECTTSSEEEEEEEC-SSCCE
T ss_pred             EEEeeccccceeeec-c------cccccccccccc-eee--eeccccc-----CCcceeecccccccccccccc-ceeee
Confidence            568999999886443 2      134555655542 321  2222221     2345678999999 5544322 33456


Q ss_pred             EEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eec
Q 008927          327 LHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLD  397 (548)
Q Consensus       327 Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~  397 (548)
                      |+++|+.+++.....+..   ..|      ...+++|   |+++|+++...+  ..|.++|++++++. .+.
T Consensus       226 v~v~D~~t~~~~~~~~~~---~~~------~~va~sp---dg~~l~va~~~~--~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         226 VSMIDTGTNKITARIPVG---PDP------AGIAVTP---DGKKVYVALSFC--NTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EEEEETTTTEEEEEEECC---SSE------EEEEECT---TSSEEEEEETTT--TEEEEEETTTTEEEEEEE
T ss_pred             eeeeecCCCeEEEEEcCC---CCE------EEEEEeC---CCCEEEEEECCC--CeEEEEECCCCeEEEEEe
Confidence            889999888764332211   111      1245655   788776654333  36888999988743 443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.80  E-value=4.9e-07  Score=87.91  Aligned_cols=290  Identities=11%  Similarity=0.012  Sum_probs=153.0

Q ss_pred             EcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeC---------CCC
Q 008927           96 VDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNY---------KDQ  165 (548)
Q Consensus        96 ~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~---------~~~  165 (548)
                      .+| |.++|... .........+|.++..+ ++.....+...        -.+.+|+|||+.|++.+.         +++
T Consensus         9 ~spdg~~~~v~~-~~~~~~~~~v~v~D~~t-g~~~~~~~~g~--------~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~   78 (355)
T d2bbkh_           9 PAPDARRVYVND-PAHFAAVTQQFVIDGEA-GRVIGMIDGGF--------LPNPVVADDGSFIAHASTVFSRIARGERTD   78 (355)
T ss_dssp             CCCCTTEEEEEE-CGGGCSSEEEEEEETTT-TEEEEEEEECS--------SCEEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred             eCCCCCEEEEEe-cccCCCcCeEEEEECCC-CcEEEEEECCC--------CCceEEcCCCCEEEEEeCCCccccccCCCC
Confidence            467 88885443 22223456788876653 33322222111        012478999998888753         245


Q ss_pred             eEEEEeCCCCCCCcee-cCCCCCC-C--CceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee
Q 008927          166 RLYKHSIDSKDSSPLP-ITPDYGE-P--LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS  241 (548)
Q Consensus       166 ~Ly~~~~~~~~~~~~~-lT~~~~~-~--~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~  241 (548)
                      .|+++|+.+  +++.. +...... .  ......+.|+|||+++++.....       ...++.+++.+++   ......
T Consensus        79 ~v~v~D~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-------~~~~~~~~~~~~~---~~~~~~  146 (355)
T d2bbkh_          79 YVEVFDPVT--LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP-------APAVGVVDLEGKA---FKRMLD  146 (355)
T ss_dssp             EEEEECTTT--CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS-------SCEEEEEETTTTE---EEEEEE
T ss_pred             EEEEEECCC--CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC-------CceeeeeecCCCc---EeeEEe
Confidence            799999987  55432 2111000 0  01123467999999987653221       2467888888876   322222


Q ss_pred             cCCc--------eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc
Q 008927          242 GSDF--------YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (548)
Q Consensus       242 ~~~~--------~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~  313 (548)
                      ....        .....+++||+.+++....       ...+.+.+... ..       ....    ..+..+.+++++.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~-------~~~~~~~~~~~-~~-------~~~~----~~~~~~~~~~~~~  207 (355)
T d2bbkh_         147 VPDCYHIFPTAPDTFFMHCRDGSLAKVAFGT-------EGTPEITHTEV-FH-------PEDE----FLINHPAYSQKAG  207 (355)
T ss_dssp             CCSEEEEEEEETTEEEEEETTSCEEEEECCS-------SSCCEEEECCC-CS-------CTTS----CBCSCCEEETTTT
T ss_pred             cCCcceEeecCCcceEEEcCCCCEEEEEecC-------CCeEEEEeccc-cc-------ceec----ceeeeccccCCCC
Confidence            1111        1234678888877543321       22233333321 11       0001    2234456777766


Q ss_pred             -EEEEEeCCCCeeeEEEEeccCCeeEeeccccccc---CCCcccc-cCcceeeeeecCCCCEEEEEEEeC-------CeE
Q 008927          314 -LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF---SRPLWVF-GINSYEIIQSHGEKNLIACSYRQN-------GRS  381 (548)
Q Consensus       314 -L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~---~~p~w~~-~~~~~~~~~~~~d~~~l~~~~~~~-------g~~  381 (548)
                       +++.++.  +  .+|.+++.+++...+.......   ....+.. +...+.+.+   ++..+++.....       +..
T Consensus       208 ~~~~~~~~--~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~  280 (355)
T d2bbkh_         208 RLVWPTYT--G--KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR---ALDRIYLLVDQRDEWRHKTASR  280 (355)
T ss_dssp             EEEEEBTT--S--EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET---TTTEEEEEEEECCTTCTTSCEE
T ss_pred             eEEEecCC--C--eEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC---CCCeEEEEeccCCceeecCCCC
Confidence             6655443  3  5778888777654433111000   0011111 112244543   777777665543       346


Q ss_pred             EEEEEECCCCceE-eecCCCceeEe--eeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          382 YLGILDDFGHSLS-LLDIPFTDIDN--ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       382 ~L~~~dl~~g~~~-~l~~~~~~~~~--~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      .|+++|+.+++.. .+..+ .....  +++|++.++++....  ...|+++|+++++.
T Consensus       281 ~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~~--d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         281 FVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTG--DKTLYIHDAESGEE  335 (355)
T ss_dssp             EEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETT--TTEEEEEETTTCCE
T ss_pred             eEEEEeCCCCcEEEEecCC-CCEEEEEEcCCCCeEEEEEECC--CCEEEEEECCCCCE
Confidence            7999999888754 34322 12222  378888766665543  36899999988874

>d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetyl xylan esterase-like
domain: Acetyl xylan esterase TM0077
species: Thermotoga maritima [TaxId: 2336]

Probab=98.80  E-value=2.1e-09  Score=104.67  Aligned_cols=71  Identities=20%  Similarity=0.218  Sum_probs=58.1

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLS  539 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG  539 (548)
                      +.+.|+|++. ||.+|+||||.|++.      .+++|+||++||++...   .+....+.|+++||+|+.+|+||..+.+
T Consensus        54 ~~~~v~~~s~-dG~~l~~~l~~P~~~------~~~~P~Vv~~hG~~~~~---~~~~~~~~~a~~G~~v~~~D~rG~G~s~  123 (322)
T d1vlqa_          54 EAYDVTFSGY-RGQRIKGWLLVPKLE------EEKLPCVVQYIGYNGGR---GFPHDWLFWPSMGYICFVMDTRGQGSGW  123 (322)
T ss_dssp             EEEEEEEECG-GGCEEEEEEEEECCS------CSSEEEEEECCCTTCCC---CCGGGGCHHHHTTCEEEEECCTTCCCSS
T ss_pred             EEEEEEEECC-CCcEEEEEEEeccCC------CCCccEEEEecCCCCCc---CcHHHHHHHHhCCCEEEEeeccccCCCC
Confidence            3467999998 999999999999752      35789999999998754   3345567899999999999999976654


Q ss_pred             h
Q 008927          540 S  540 (548)
Q Consensus       540 ~  540 (548)
                      .
T Consensus       124 ~  124 (322)
T d1vlqa_         124 L  124 (322)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetyl xylan esterase-like
domain: Cephalosporin C deacetylase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.78  E-value=3e-09  Score=102.93  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=60.5

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLS  539 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG  539 (548)
                      ..+.|+|++. ||.+|+|||+.|++       .++.|+||++||++....  .|...++.||++||+|+.+|+||....+
T Consensus        55 ~~~~v~~~~~-dg~~i~~~l~~P~~-------~~~~P~vv~~HG~~~~~~--~~~~~~~~la~~Gy~vi~~D~rG~G~s~  124 (318)
T d1l7aa_          55 KVYRLTYKSF-GNARITGWYAVPDK-------EGPHPAIVKYHGYNASYD--GEIHEMVNWALHGYATFGMLVRGQQRSE  124 (318)
T ss_dssp             EEEEEEEEEG-GGEEEEEEEEEESS-------CSCEEEEEEECCTTCCSG--GGHHHHHHHHHTTCEEEEECCTTTSSSC
T ss_pred             EEEEEEEECC-CCcEEEEEEEecCC-------CCCceEEEEecCCCCCcc--chHHHHHHHHHCCCEEEEEeeCCCCCCC
Confidence            4578999998 99999999999975       356899999999876543  3556788999999999999999987765


Q ss_pred             hhh
Q 008927          540 SVP  542 (548)
Q Consensus       540 ~~f  542 (548)
                      ..+
T Consensus       125 ~~~  127 (318)
T d1l7aa_         125 DTS  127 (318)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.78  E-value=1.6e-06  Score=83.48  Aligned_cols=237  Identities=8%  Similarity=0.024  Sum_probs=136.3

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      +++|+|+.|+|..  +..+++.+++.  .+. +.++..    ...+..+.|||||+.|+....+         ..|.++|
T Consensus        24 a~~~~g~~l~~~~--~~~v~i~~~~~--~~~~~~~~~H----~~~v~~~~~sp~g~~latg~~d---------g~i~iwd   86 (311)
T d1nr0a1          24 GNTPAGDKIQYCN--GTSVYTVPVGS--LTDTEIYTEH----SHQTTVAKTSPSGYYCASGDVH---------GNVRIWD   86 (311)
T ss_dssp             EECTTSSEEEEEE--TTEEEEEETTC--SSCCEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEEEE
T ss_pred             EEcCCCCEEEEEe--CCEEEEEECCC--CceeEEEcCC----CCCEEEEEEeCCCCeEeccccC---------ceEeeee
Confidence            5667888999987  55688888876  433 445543    2346677899999987664333         3678888


Q ss_pred             CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      +.+++......+......+....|+|||+.|+....+.      ...+.+.+++. ++  ....+.+..    ..+....
T Consensus        87 ~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~------~~~~~v~~~~~-~~--~~~~l~~h~----~~v~~v~  153 (311)
T d1nr0a1          87 TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR------ERFGHVFLFDT-GT--SNGNLTGQA----RAMNSVD  153 (311)
T ss_dssp             SSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS------SCSEEEEETTT-CC--BCBCCCCCS----SCEEEEE
T ss_pred             eeccccccccccccccCccccccccccccccccccccc------ccccccccccc-cc--ccccccccc----ccccccc
Confidence            88775100122322334466778999999988655221      23356667764 33  122333332    3466788


Q ss_pred             ECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927          308 WSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (548)
Q Consensus       308 wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~  386 (548)
                      |+|||+ +++.... ++  .|..+|..+++.......   ...+.     ....+.|   +++.|+ +...++.  +.++
T Consensus       154 ~~~~~~~~l~sgs~-d~--~i~i~d~~~~~~~~~~~~---~~~~i-----~~v~~~p---~~~~l~-~~~~d~~--v~~~  216 (311)
T d1nr0a1         154 FKPSRPFRIISGSD-DN--TVAIFEGPPFKFKSTFGE---HTKFV-----HSVRYNP---DGSLFA-STGGDGT--IVLY  216 (311)
T ss_dssp             ECSSSSCEEEEEET-TS--CEEEEETTTBEEEEEECC---CSSCE-----EEEEECT---TSSEEE-EEETTSC--EEEE
T ss_pred             ccccceeeeccccc-cc--cccccccccccccccccc---ccccc-----cccccCc---cccccc-ccccccc--cccc
Confidence            999999 5554443 44  466677777765443321   11111     1234543   555544 4444554  5566


Q ss_pred             ECCCCceE-eecCC-------CceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          387 DDFGHSLS-LLDIP-------FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       387 dl~~g~~~-~l~~~-------~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      |+.++... .+...       ...+..+  +++++.|+ +++.   -..|+++|+.+++.
T Consensus       217 d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~-tgs~---Dg~v~iwd~~t~~~  272 (311)
T d1nr0a1         217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA-SASA---DKTIKIWNVATLKV  272 (311)
T ss_dssp             ETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE-EEET---TSEEEEEETTTTEE
T ss_pred             ccccccccccccccccccccccccccccccCCCCCEEE-EEeC---CCeEEEEECCCCcE
Confidence            77666533 33211       1124444  56777554 3433   24788999887764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.78  E-value=5.4e-07  Score=88.88  Aligned_cols=261  Identities=6%  Similarity=-0.111  Sum_probs=133.9

Q ss_pred             EECCE--EEEEeCCC--CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccC-CCCCCceeEEEEE
Q 008927          152 IFGDT--VIFSNYKD--QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR-QDALNSTTEIVAI  226 (548)
Q Consensus       152 ~~~~~--i~F~~~~~--~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~-~~~~~~~~~l~~i  226 (548)
                      ++++.  |++....+  .+||++|.++  ++....+...     ....+.|||||+.|++...... .........|.++
T Consensus        29 ~~~~~~~v~~~~~~~g~~~~~~~d~~~--~~~~~~~~~~-----~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~  101 (368)
T d1mdah_          29 AISRRSHITLPAYFAGTTENWVSCAGC--GVTLGHSLGA-----FLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVF  101 (368)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTT--TEEEEEEEEC-----TTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEE
T ss_pred             CCCcceeEEeeccCCCcceEEEEeCCC--CcEEEEEeCC-----CCCcceECCCCCEEEEEcccCccccccccCCeEEEE
Confidence            45554  45544433  4899999987  6665544431     1235789999999887643211 0111234579999


Q ss_pred             ECCCCCccCcEEeeecC---C-----ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCC
Q 008927          227 ALNGQNIQEPKVLVSGS---D-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT  298 (548)
Q Consensus       227 dl~~g~~~~~~~L~~~~---~-----~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~  298 (548)
                      |+.+++   .......+   .     .-....||||||+|++....       ...++++|+.. +++.....+.+...-
T Consensus       102 D~~t~~---~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~-------~~~v~~~d~~~-~~~~~~~~~~~~~~~  170 (368)
T d1mdah_         102 DPVTFL---PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG-------SSAAAGLSVPG-ASDDQLTKSASCFHI  170 (368)
T ss_dssp             CTTTCC---EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS-------SSCEEEEEETT-TEEEEEEECSSCCCC
T ss_pred             ECCCCc---EeeeecCCccceecccCCccceEECCCCCEEEEEeCC-------CCeEEEEECCC-CcEeEEeeccCcceE
Confidence            999987   33322111   1     11246899999999754422       34688889874 442211111111000


Q ss_pred             -cccCCcCceECcCCc-EEEEEeCCC--------------------------Ce------eeEEEEeccCCeeEeecccc
Q 008927          299 -IVESPTEPKWSSKGE-LFFVTDRKN--------------------------GF------WNLHKWIESNNEVLAIYSLD  344 (548)
Q Consensus       299 -~~~~~~~~~wspDG~-L~~~sd~~~--------------------------g~------~~Ly~~d~~~g~~~~l~~~~  344 (548)
                       .........+++||+ +++..+...                          +.      ..++.++..+++...+....
T Consensus       171 ~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~  250 (368)
T d1mdah_         171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAID  250 (368)
T ss_dssp             EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCC
T ss_pred             ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecc
Confidence             001112245577777 433321100                          00      12334444443333222100


Q ss_pred             ccc---CCCcccc-cCcceeeeeecCCCCEEEEEEEeC------CeEEEEEEECCCCceE-eecCCCceeE--eeeecCC
Q 008927          345 AEF---SRPLWVF-GINSYEIIQSHGEKNLIACSYRQN------GRSYLGILDDFGHSLS-LLDIPFTDID--NITLGND  411 (548)
Q Consensus       345 ~d~---~~p~w~~-~~~~~~~~~~~~d~~~l~~~~~~~------g~~~L~~~dl~~g~~~-~l~~~~~~~~--~~s~d~~  411 (548)
                      ...   ....|.. +...+.+.+   +++.+++....+      ...+|+++|..+++.. .+..+ ..+.  .+++|++
T Consensus       251 ~~~~~~~~~~~~~~g~~~~a~~~---~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~~a~spDG~  326 (368)
T d1mdah_         251 GNESGRKADNFRSAGFQMVAKLK---NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGA  326 (368)
T ss_dssp             SSCTHHHHTTEEECSSSCEEEET---TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSS
T ss_pred             cccceeeeeeecCCCceeEEEcC---CCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC-CceeEEEECCCCC
Confidence            000   0011221 122344543   677777665543      2467999999988643 33222 1222  2378888


Q ss_pred             EEEEEEecCCCCCeEEEEEcCCCce
Q 008927          412 CLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       412 ~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      .++|+....  ...|+++|..+++.
T Consensus       327 ~~ly~s~~~--~~~v~v~D~~tgk~  349 (368)
T d1mdah_         327 SDNYANSAG--TEVLDIYDAASDQD  349 (368)
T ss_dssp             CEEEEEETT--TTEEEEEESSSCEE
T ss_pred             EEEEEEeCC--CCeEEEEECCCCCE
Confidence            766665543  35899999988874

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.75  E-value=2.3e-05  Score=68.73  Aligned_cols=266  Identities=14%  Similarity=0.126  Sum_probs=169.6

Q ss_pred             CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEEC--CEEEEEeCCC-----CeEEEEe
Q 008927           99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG--DTVIFSNYKD-----QRLYKHS  171 (548)
Q Consensus        99 g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~--~~i~F~~~~~-----~~Ly~~~  171 (548)
                      ++.+.++...   +|..+++....   ++.+.||-.+.+.          .-.|..  +.|.|..|-.     ..||..+
T Consensus        25 ~d~ll~~~~s---eG~vni~~l~g---~~~vkLtkePI~~----------~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~N   88 (313)
T d2hu7a1          25 GDKLLVVGFS---EGSVNAYLYDG---GETVKLNREPINS----------VLDPHYGVGRVILVRDVSKGAEQHALFKVN   88 (313)
T ss_dssp             TTEEEEEEEE---TTEEEEEEESS---SSCEECCSSCCSE----------ECEECTTBSEEEEEEECSTTSCCEEEEEEE
T ss_pred             CCcEEEEEec---cceEEEEEEeC---CEEEEEecccccC----------cCCCccCcceEEEEeehhcCcceeeEEEEc
Confidence            6767777643   58889987744   4788898655332          112322  4788987532     2789999


Q ss_pred             CCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEE
Q 008927          172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRM  251 (548)
Q Consensus       172 ~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~  251 (548)
                      +... ||..+|...   .++|+.+.+.  |++.|+|+-...      .+..||+++  +|.   .+.|+.-+.|-.--.+
T Consensus        89 lk~~-GEE~~i~sp---k~vRI~S~~y--ddk~vvF~Gase------d~~~LYvie--gGk---lrkL~~vPpFsFVtDI  151 (313)
T d2hu7a1          89 TSRP-GEEQRLEAV---KPMRILSGVD--TGEAVVFTGATE------DRVALYALD--GGG---LRELARLPGFGFVSDI  151 (313)
T ss_dssp             TTST-TCEEECTTS---CSBEEEEEEE--CSSCEEEEEECS------SCEEEEEEE--TTE---EEEEEEESSCEEEEEE
T ss_pred             cCCC-CeeeEecCC---ceEEEEEeee--cCceEEEecccC------CceEEEEEe--CCc---eeeeccCCCcceEEec
Confidence            9743 567777654   2478776554  678899985432      246788775  777   7888766555211123


Q ss_pred             CCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCC-CCeeeEEEE
Q 008927          252 DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK-NGFWNLHKW  330 (548)
Q Consensus       252 SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~-~g~~~Ly~~  330 (548)
                        .|++|+=+.--.++    ...++++|+.+ |.   .++++..+    .++.++..+++.++  ++|.. .|...+..+
T Consensus       152 --~~d~I~G~g~~~g~----~~sfF~adl~S-G~---lri~tpke----GS~~~ay~~~gnKV--~sdyEt~gEsywit~  215 (313)
T d2hu7a1         152 --RGDLIAGLGFFGGG----RVSLFTSNLSS-GG---LRVFDSGE----GSFSSASISPGMKV--TAGLETAREARLVTV  215 (313)
T ss_dssp             --ETTEEEEEEEEETT----EEEEEEEETTT-EE---EEEECCSS----EEEEEEEECTTSCE--EEEEEESSCEEEEEE
T ss_pred             --cCCeEEEEeeecCC----cceEEEEeccc-CC---EEEecCCC----CcccceeEccCcee--eeccCCCCceEEEEE
Confidence              47777644321221    24599999974 53   67777765    78899999999887  44321 233334467


Q ss_pred             eccCCeeEeecccccccCC-----CcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCceeEe
Q 008927          331 IESNNEVLAIYSLDAEFSR-----PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDN  405 (548)
Q Consensus       331 d~~~g~~~~l~~~~~d~~~-----p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~~  405 (548)
                      |+++++.+++.-...|+..     -.|.      ...    .+++|+..+.++|++.|+.    +|+  .+..+.+.+..
T Consensus       216 D~~s~~yerve~P~kd~~sy~p~~I~~~------~Y~----Pdd~L~iiakrdG~s~lF~----nGk--~in~p~G~~~g  279 (313)
T d2hu7a1         216 DPRDGSVEDLELPSKDFSSYRPTAITWL------GYL----PDGRLAVVARREGRSAVFI----DGE--RVEAPQGNHGR  279 (313)
T ss_dssp             CTTTCCEEECCCSSCHHHHHCCSEEEEE------EEC----TTSCEEEEEEETTEEEEEE----TTE--EECCCSSEEEE
T ss_pred             ecccCceeeeecCcccceeecceEEEee------eeC----CCCcEEEEEecCCchheee----cce--EecCCCCcccc
Confidence            9999998887533233321     1232      133    2456767788899999873    343  34555556666


Q ss_pred             eeecCCEEEEEEecCCCCCeEEEE
Q 008927          406 ITLGNDCLFVEGASGVEPSSVAKV  429 (548)
Q Consensus       406 ~s~d~~~l~~~~ss~~~p~~l~~~  429 (548)
                      ...=++.+||..++-.+|..|..+
T Consensus       280 at~i~~~iyfshsSL~tP~kI~~~  303 (313)
T d2hu7a1         280 VVLWRGKLVTSHTSLSTPPRIVSL  303 (313)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEEE
T ss_pred             eEEECCEEEEeecccCCCceeEEc
Confidence            666678899999999888887655

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=5.9e-06  Score=79.94  Aligned_cols=275  Identities=9%  Similarity=0.012  Sum_probs=149.6

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCC-CCCccccceeeCCeeeEEECCEEEEEeCCCCe
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPK-EYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR  166 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~-~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~  166 (548)
                      ..+..+.++| |..|+-- .    +|.-.||.+...  .....+... ...-...+.   .-+|++++..|+-. ..++.
T Consensus        52 ~~V~~v~fs~~g~~latg-~----dg~V~iWd~~~~--~~~~~~~~~~~~~h~~~I~---~v~~s~dg~~l~s~-~~dg~  120 (337)
T d1gxra_          52 EVVCAVTISNPTRHVYTG-G----KGCVKVWDISHP--GNKSPVSQLDCLNRDNYIR---SCKLLPDGCTLIVG-GEAST  120 (337)
T ss_dssp             SCCCEEEECSSSSEEEEE-C----BSEEEEEETTST--TCCSCSEEEECSCTTSBEE---EEEECTTSSEEEEE-ESSSE
T ss_pred             CcEEEEEECCCCCEEEEE-E----CCEEEEEEccCC--cccceeEEeeecCCCCcEE---EEEEcCCCCEEEEe-ecccc
Confidence            5577889999 6666542 1    466677766543  222222110 001011111   12577777766544 45777


Q ss_pred             EEEEeCCCCCCCce---ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeec-
Q 008927          167 LYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG-  242 (548)
Q Consensus       167 Ly~~~~~~~~~~~~---~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~-  242 (548)
                      |.+.++..  ...+   .+...    ........|+|++..++....+         ..|..+++.+++   ......+ 
T Consensus       121 i~iwd~~~--~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~d---------~~i~~~~~~~~~---~~~~~~~~  182 (337)
T d1gxra_         121 LSIWDLAA--PTPRIKAELTSS----APACYALAISPDSKVCFSCCSD---------GNIAVWDLHNQT---LVRQFQGH  182 (337)
T ss_dssp             EEEEECCC--C--EEEEEEECS----SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTE---EEEEECCC
T ss_pred             cccccccc--cccccccccccc----cccccccccccccccccccccc---------cccccccccccc---cccccccc
Confidence            87778765  3332   22222    1234456799999987665333         358888998886   4444332 


Q ss_pred             CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCC
Q 008927          243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN  322 (548)
Q Consensus       243 ~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~  322 (548)
                      .+......|+++|+.++....        ...+.+.++.. ++  ....+.. .    ..+....|+|+++++++... +
T Consensus       183 ~~~v~~l~~s~~~~~~~~~~~--------d~~v~i~d~~~-~~--~~~~~~~-~----~~i~~l~~~~~~~~l~~~~~-d  245 (337)
T d1gxra_         183 TDGASCIDISNDGTKLWTGGL--------DNTVRSWDLRE-GR--QLQQHDF-T----SQIFSLGYCPTGEWLAVGME-S  245 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEET--------TSEEEEEETTT-TE--EEEEEEC-S----SCEEEEEECTTSSEEEEEET-T
T ss_pred             ccccccccccccccccccccc--------ccccccccccc-ce--eeccccc-c----cceEEEEEcccccccceecc-c
Confidence            334566789999998886542        35688889874 43  1222222 2    35677899999995555443 4


Q ss_pred             CeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCce
Q 008927          323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD  402 (548)
Q Consensus       323 g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~  402 (548)
                      +  .+..+++.+++........    .+     .....|.|   +++.|+ +...++.  |+++|+.+++..........
T Consensus       246 ~--~i~i~d~~~~~~~~~~~~~----~~-----i~~v~~s~---~g~~l~-s~s~Dg~--i~iwd~~~~~~~~~~~~~~~  308 (337)
T d1gxra_         246 S--NVEVLHVNKPDKYQLHLHE----SC-----VLSLKFAY---CGKWFV-STGKDNL--LNAWRTPYGASIFQSKESSS  308 (337)
T ss_dssp             S--CEEEEETTSSCEEEECCCS----SC-----EEEEEECT---TSSEEE-EEETTSE--EEEEETTTCCEEEEEECSSC
T ss_pred             c--ccccccccccccccccccc----cc-----cceEEECC---CCCEEE-EEeCCCe--EEEEECCCCCEEEEccCCCC
Confidence            4  4566677666654332111    11     12244554   666554 4445554  66778888765433222233


Q ss_pred             eEee--eecCCEEEEEEecCCCCCeEEEEE
Q 008927          403 IDNI--TLGNDCLFVEGASGVEPSSVAKVT  430 (548)
Q Consensus       403 ~~~~--s~d~~~l~~~~ss~~~p~~l~~~d  430 (548)
                      +..+  +++++.|+ +++. +  ..|.++|
T Consensus       309 v~~~~~s~d~~~l~-t~s~-D--~~I~vWd  334 (337)
T d1gxra_         309 VLSCDISVDDKYIV-TGSG-D--KKATVYE  334 (337)
T ss_dssp             EEEEEECTTSCEEE-EEET-T--SCEEEEE
T ss_pred             EEEEEEeCCCCEEE-EEeC-C--CeEEEEE
Confidence            4433  66676554 3332 2  3455554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.63  E-value=2.6e-06  Score=81.65  Aligned_cols=98  Identities=11%  Similarity=0.043  Sum_probs=59.4

Q ss_pred             eeeEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      .+++++++.|+.. .++++|.++|++.  ++.. .+.-.   .......+.|||||+.++.. ...       .+.|+++
T Consensus         2 ~a~~~~~~~l~~~-~~~~~v~v~D~~t--~~~~~t~~~~---~~~~p~~l~~spDG~~l~v~-~~~-------~~~v~~~   67 (346)
T d1jmxb_           2 PALKAGHEYMIVT-NYPNNLHVVDVAS--DTVYKSCVMP---DKFGPGTAMMAPDNRTAYVL-NNH-------YGDIYGI   67 (346)
T ss_dssp             CCCCTTCEEEEEE-ETTTEEEEEETTT--TEEEEEEECS---SCCSSCEEEECTTSSEEEEE-ETT-------TTEEEEE
T ss_pred             ccCCCCCcEEEEE-cCCCEEEEEECCC--CCEEEEEEcC---CCCCcceEEECCCCCEEEEE-ECC-------CCcEEEE
Confidence            3455555555554 4667999999987  5443 22211   01234577899999987554 322       2479999


Q ss_pred             ECCCCCccCcEE-eeecCC------ceeeeEECCCCCEEEEEE
Q 008927          227 ALNGQNIQEPKV-LVSGSD------FYAFPRMDPRGERMAWIE  262 (548)
Q Consensus       227 dl~~g~~~~~~~-L~~~~~------~~~~p~~SPDGk~La~~~  262 (548)
                      |+.+++   ... +.....      ......+||||++|+...
T Consensus        68 d~~t~~---~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~  107 (346)
T d1jmxb_          68 DLDTCK---NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV  107 (346)
T ss_dssp             ETTTTE---EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred             eCccCe---eeeeecccccccccCCceEEEEEecCCCEEEEEe
Confidence            999986   322 221111      123557999999886543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=6.7e-06  Score=78.51  Aligned_cols=268  Identities=9%  Similarity=0.036  Sum_probs=137.4

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L  167 (548)
                      ..+..+.++| |+.+| +..+.  +++..+|.++..  +....+.... ......   -+.+|++||+.|+..+..++.+
T Consensus        37 ~~v~~la~spDG~~L~-v~~~~--d~~i~~~~i~~~--~~~~~~~~~~-~~~~~p---~~l~~spDg~~l~v~~~~~~~v  107 (333)
T d1ri6a_          37 GQVQPMVVSPDKRYLY-VGVRP--EFRVLAYRIAPD--DGALTFAAES-ALPGSL---THISTDHQGQFVFVGSYNAGNV  107 (333)
T ss_dssp             SCCCCEEECTTSSEEE-EEETT--TTEEEEEEECTT--TCCEEEEEEE-ECSSCC---SEEEECTTSSEEEEEETTTTEE
T ss_pred             CCEeEEEEeCCCCEEE-EEECC--CCeEEEEEEeCC--CCcEEEeeec-ccCCCc---eEEEEcCCCCEEeecccCCCce
Confidence            4567789999 77775 44332  466667776544  1222222110 000000   1236788888888877666777


Q ss_pred             EEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEe------ee
Q 008927          168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL------VS  241 (548)
Q Consensus       168 y~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L------~~  241 (548)
                      ..++.+.  ........... .........++||++.++.....        ...|..++.....   ....      ..
T Consensus       108 ~~~~~~~--~~~~~~~~~~~-~~~~~~~v~~s~d~~~~~~~~~~--------~~~i~~~~~~~~~---~~~~~~~~~~~~  173 (333)
T d1ri6a_         108 SVTRLED--GLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALK--------QDRICLFTVSDDG---HLVAQDPAEVTT  173 (333)
T ss_dssp             EEEEEET--TEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGG--------GTEEEEEEECTTS---CEEEEEEEEEEC
T ss_pred             eeecccc--ccceecccccC-CCccceEEEeeecceeeeccccc--------cceeeEEEeccCC---cceeeeceeeee
Confidence            6666554  22222211000 01223456799999987665322        1356666666543   1111      11


Q ss_pred             c-CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCC-ceeeeEEEcCCCC--CcccCCcCceECcCCcEEEE
Q 008927          242 G-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG-DVYKRVCVAGFDP--TIVESPTEPKWSSKGELFFV  317 (548)
Q Consensus       242 ~-~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g-~~~~~~~l~~~~~--~~~~~~~~~~wspDG~L~~~  317 (548)
                      . ........++++++.++... ..      .....+.+..... .+.....+.....  ..........+++||++++.
T Consensus       174 ~~g~~p~~i~~~~~~~~~~~~~-~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~  246 (333)
T d1ri6a_         174 VEGAGPRHMVFHPNEQYAYCVN-EL------NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA  246 (333)
T ss_dssp             STTCCEEEEEECTTSSEEEEEE-TT------TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE
T ss_pred             ecCCCccEEEEeccceeEEeec-cc------cCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceee
Confidence            1 11224557899999775443 22      2345555544222 1111111111100  00012345678999995555


Q ss_pred             EeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEee
Q 008927          318 TDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL  396 (548)
Q Consensus       318 sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l  396 (548)
                      .....+...+|.++..++..+...... ....|      ..+.++|   ||++|+.....++.-.+|.+|.++|+++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p------~~~a~sp---DGk~l~va~~~~~~v~v~~id~~tG~l~~~  315 (333)
T d1ri6a_         247 CDRTASLITVFSVSEDGSVLSKEGFQP-TETQP------RGFNVDH---SGKYLIAAGQKSHHISVYEIVGEQGLLHEK  315 (333)
T ss_dssp             EETTTTEEEEEEECTTSCCEEEEEEEE-CSSSC------CCEEECT---TSSEEEEECTTTCEEEEEEEETTTTEEEEE
T ss_pred             ecccCCeEEEEEEcCCCCEEEEEEEeC-CCCCe------eEEEEeC---CCCEEEEEECCCCeEEEEEEECCCCcEEEE
Confidence            544366677888776544333221110 00112      1245665   888876543345667888899999987655

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.59  E-value=1.6e-05  Score=75.52  Aligned_cols=138  Identities=11%  Similarity=0.005  Sum_probs=80.3

Q ss_pred             EEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcE
Q 008927          159 FSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK  237 (548)
Q Consensus       159 F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~  237 (548)
                      .+..++++|+++|+..  ++.. .|....  .......+.+||||++|+.. ...       ...|+++|+.+++   ..
T Consensus         5 vt~~~d~~v~v~D~~s--~~~~~~i~~~~--~~~~~~~i~~spDg~~l~v~-~~~-------~~~v~v~D~~t~~---~~   69 (337)
T d1pbyb_           5 LAPARPDKLVVIDTEK--MAVDKVITIAD--AGPTPMVPMVAPGGRIAYAT-VNK-------SESLVKIDLVTGE---TL   69 (337)
T ss_dssp             EEEETTTEEEEEETTT--TEEEEEEECTT--CTTCCCCEEECTTSSEEEEE-ETT-------TTEEEEEETTTCC---EE
T ss_pred             EEEcCCCEEEEEECCC--CeEEEEEECCC--CCCCccEEEECCCCCEEEEE-ECC-------CCeEEEEECCCCc---EE
Confidence            3344578999999986  5443 332211  12235678899999986554 222       1479999999987   33


Q ss_pred             E-eeecC-C----ceeeeEECCCCCEEEEEEecCCCCCC----CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          238 V-LVSGS-D----FYAFPRMDPRGERMAWIEWHHPNMPW----DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       238 ~-L~~~~-~----~~~~p~~SPDGk~La~~~~~~~~~p~----~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      . +.... .    ......+||||++|+.........-|    ....+.+.+... ++.  ...+...     .......
T Consensus        70 ~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~--~~~~~~~-----~~~~~~~  141 (337)
T d1pbyb_          70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSR--RKAFEAP-----RQITMLA  141 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEE--EEEEECC-----SSCCCEE
T ss_pred             EEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccC-CeE--EEecccc-----CCceEEE
Confidence            2 22111 1    12356899999998766533221111    234677778763 432  2333322     3456789


Q ss_pred             ECcCCcEEEEEe
Q 008927          308 WSSKGELFFVTD  319 (548)
Q Consensus       308 wspDG~L~~~sd  319 (548)
                      |+|||+.+++.+
T Consensus       142 ~s~dg~~l~~~~  153 (337)
T d1pbyb_         142 WARDGSKLYGLG  153 (337)
T ss_dssp             ECTTSSCEEEES
T ss_pred             EcCCCCEEEEEc
Confidence            999999444443

>d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: PepX catalytic domain-like
domain: Bacterial cocaine esterase N-terminal domain
species: Rhodococcus sp. mb1 [TaxId: 51612]

Probab=98.58  E-value=2.1e-08  Score=99.02  Aligned_cols=73  Identities=15%  Similarity=0.125  Sum_probs=59.5

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEcc--CccccccCccChHHHHHHhcCcEEEEeCCCCCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG--GPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLS  539 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHG--GP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG  539 (548)
                      +.|.++.+ ||.+|.+.||.|++       ++++|+||.+||  +........+....++||++||+|+.+|+||+.+.+
T Consensus         6 ~~v~ipmr-DGv~L~~~vy~P~~-------~~~~P~il~~~pyg~~~~~~~~~~~~~~~~~a~~GY~vv~~d~RG~g~S~   77 (347)
T d1ju3a2           6 SNVMVPMR-DGVRLAVDLYRPDA-------DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASE   77 (347)
T ss_dssp             EEEEEECT-TSCEEEEEEEEECC-------SSCEEEEEEEESSCTTCCHHHHTTSCCTHHHHHTTCEEEEEECTTSTTCC
T ss_pred             eCeEEECC-CCCEEEEEEEEcCC-------CCCEEEEEEEcCCCCccccCcCcccHHHHHHHHCCCEEEEEeeCCccccC
Confidence            45788888 99999999999964       468999999996  344444556677789999999999999999988776


Q ss_pred             hhh
Q 008927          540 SVP  542 (548)
Q Consensus       540 ~~f  542 (548)
                      -+|
T Consensus        78 G~~   80 (347)
T d1ju3a2          78 GEF   80 (347)
T ss_dssp             SCC
T ss_pred             Ccc
Confidence            544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.58  E-value=3.3e-06  Score=80.86  Aligned_cols=238  Identities=11%  Similarity=-0.011  Sum_probs=129.6

Q ss_pred             CeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (548)
Q Consensus       147 g~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i  226 (548)
                      |..|.+.++.|+|++-..++||++++++  ++.+.....     .......+.+||..++..  .         ..|+++
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~--g~~~~~~~~-----~~~~~i~~~~dg~l~va~--~---------~gl~~~   83 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLAS--GRKTVHALP-----FMGSALAKISDSKQLIAS--D---------DGLFLR   83 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTT--TEEEEEECS-----SCEEEEEEEETTEEEEEE--T---------TEEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCC--CeEEEEECC-----CCcEEEEEecCCCEEEEE--e---------CccEEe
Confidence            3567777889999987888999999987  555443221     234455677788665542  1         259999


Q ss_pred             ECCCCCccCcEEeeecCC-----ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCccc
Q 008927          227 ALNGQNIQEPKVLVSGSD-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE  301 (548)
Q Consensus       227 dl~~g~~~~~~~L~~~~~-----~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~  301 (548)
                      |.++++   .+.+.....     ......+.|+|+ |.+........ -....+|  .+. +|++   ..+...-    .
T Consensus        84 d~~tg~---~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~-~~~g~l~--~~~-~g~~---~~~~~~~----~  148 (295)
T d2ghsa1          84 DTATGV---LTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAE-TGAGSIY--HVA-KGKV---TKLFADI----S  148 (295)
T ss_dssp             ETTTCC---EEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCC-TTCEEEE--EEE-TTEE---EEEEEEE----S
T ss_pred             ecccce---eeEEeeeecCCCcccceeeEECCCCC-EEEEecccccc-ccceeEe--eec-CCcE---EEEeecc----C
Confidence            999998   777653211     234667899997 43333322111 1123444  444 3543   2222211    2


Q ss_pred             CCcCceECcCCcEEEEEeCCCCeeeEEEEeccC--Ce----eEeecccccccCCCcccccCcceeeeeecCCCCEEEEEE
Q 008927          302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN--NE----VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY  375 (548)
Q Consensus       302 ~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~--g~----~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~  375 (548)
                      ....+.|++|++.++++|...  ..||+++.+.  +.    ...........+.|.      .....   .+| .|++..
T Consensus       149 ~~Ng~~~s~d~~~l~~~dt~~--~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pd------G~~vD---~~G-nlWva~  216 (295)
T d2ghsa1         149 IPNSICFSPDGTTGYFVDTKV--NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMD------GSVCD---AEG-HIWNAR  216 (295)
T ss_dssp             SEEEEEECTTSCEEEEEETTT--CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEE------EEEEC---TTS-CEEEEE
T ss_pred             CcceeeecCCCceEEEeeccc--ceeeEeeecccccccccceEEEeccCccccccc------ceEEc---CCC-CEEeee
Confidence            235678999999444444313  3577766532  21    111111111111111      12232   233 454433


Q ss_pred             EeCCeEEEEEEECCCCceEeecCCCceeEee---eecCCEEEEEEecCCC----------CCeEEEEEc
Q 008927          376 RQNGRSYLGILDDFGHSLSLLDIPFTDIDNI---TLGNDCLFVEGASGVE----------PSSVAKVTL  431 (548)
Q Consensus       376 ~~~g~~~L~~~dl~~g~~~~l~~~~~~~~~~---s~d~~~l~~~~ss~~~----------p~~l~~~d~  431 (548)
                      ...  ..|+++|+++..+..+..|......+   -+|.+.||++.++...          .+.||++++
T Consensus       217 ~~~--g~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~~~~~~~~~~~p~~G~l~~~~~  283 (295)
T d2ghsa1         217 WGE--GAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFELGI  283 (295)
T ss_dssp             ETT--TEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEEECSS
T ss_pred             eCC--CceEEecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECCcCCChhHhccCCCCceEEEEcC
Confidence            222  36889998766677777765444433   2566888877654321          246777654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.8e-05  Score=74.98  Aligned_cols=234  Identities=8%  Similarity=0.002  Sum_probs=130.1

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceec---CCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPI---TPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~l---T~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      +|++++..|+-..  ++.|.+-++... .....+   ....  ....+..+.|+|||+.|+....+         ..|.+
T Consensus        58 ~fs~~g~~latg~--dg~V~iWd~~~~-~~~~~~~~~~~~~--h~~~I~~v~~s~dg~~l~s~~~d---------g~i~i  123 (337)
T d1gxra_          58 TISNPTRHVYTGG--KGCVKVWDISHP-GNKSPVSQLDCLN--RDNYIRSCKLLPDGCTLIVGGEA---------STLSI  123 (337)
T ss_dssp             EECSSSSEEEEEC--BSEEEEEETTST-TCCSCSEEEECSC--TTSBEEEEEECTTSSEEEEEESS---------SEEEE
T ss_pred             EECCCCCEEEEEE--CCEEEEEEccCC-cccceeEEeeecC--CCCcEEEEEEcCCCCEEEEeecc---------ccccc
Confidence            5667777766544  566666677542 222211   1110  11235678899999988765443         35777


Q ss_pred             EECCCCCccCcEEe---eecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccC
Q 008927          226 IALNGQNIQEPKVL---VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES  302 (548)
Q Consensus       226 idl~~g~~~~~~~L---~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~  302 (548)
                      +|+....   .+.+   ...........|+||+..|+... .       ...+.+.++.. ++.  ........    ..
T Consensus       124 wd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~-------d~~i~~~~~~~-~~~--~~~~~~~~----~~  185 (337)
T d1gxra_         124 WDLAAPT---PRIKAELTSSAPACYALAISPDSKVCFSCC-S-------DGNIAVWDLHN-QTL--VRQFQGHT----DG  185 (337)
T ss_dssp             EECCCC-----EEEEEEECSSSCEEEEEECTTSSEEEEEE-T-------TSCEEEEETTT-TEE--EEEECCCS----SC
T ss_pred             ccccccc---cccccccccccccccccccccccccccccc-c-------ccccccccccc-ccc--cccccccc----cc
Confidence            8887654   3332   22233345668999999887444 1       34688888874 432  22333322    34


Q ss_pred             CcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEE
Q 008927          303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY  382 (548)
Q Consensus       303 ~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~  382 (548)
                      +....|+++|+.++.... ++  .+..+|+.+++.......    ..+.     ....+.|   +++.|+ +...++  .
T Consensus       186 v~~l~~s~~~~~~~~~~~-d~--~v~i~d~~~~~~~~~~~~----~~~i-----~~l~~~~---~~~~l~-~~~~d~--~  247 (337)
T d1gxra_         186 ASCIDISNDGTKLWTGGL-DN--TVRSWDLREGRQLQQHDF----TSQI-----FSLGYCP---TGEWLA-VGMESS--N  247 (337)
T ss_dssp             EEEEEECTTSSEEEEEET-TS--EEEEEETTTTEEEEEEEC----SSCE-----EEEEECT---TSSEEE-EEETTS--C
T ss_pred             cccccccccccccccccc-cc--cccccccccceeeccccc----ccce-----EEEEEcc---cccccc-eecccc--c
Confidence            667889999995555444 34  466677777764332211    1111     1233443   555554 444454  4


Q ss_pred             EEEEECCCCceEeecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          383 LGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       383 L~~~dl~~g~~~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      +.++|+.+++..........+..+  +++++.|+ +++.   -..|.++|+.+++.
T Consensus       248 i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~-s~s~---Dg~i~iwd~~~~~~  299 (337)
T d1gxra_         248 VEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV-STGK---DNLLNAWRTPYGAS  299 (337)
T ss_dssp             EEEEETTSSCEEEECCCSSCEEEEEECTTSSEEE-EEET---TSEEEEEETTTCCE
T ss_pred             cccccccccccccccccccccceEEECCCCCEEE-EEeC---CCeEEEEECCCCCE
Confidence            566787777665444333345444  56777554 3332   25688889877763

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.48  E-value=7.5e-05  Score=72.48  Aligned_cols=160  Identities=11%  Similarity=0.005  Sum_probs=92.3

Q ss_pred             eeEEECCEEEEEeCC----CCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCC-CCCCceeE
Q 008927          149 AFRIFGDTVIFSNYK----DQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-DALNSTTE  222 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~----~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~-~~~~~~~~  222 (548)
                      +++||+++|+..+..    ..+||++|.++  ++.. .+...      ....+.|||||++|++....... ........
T Consensus        27 a~spdg~~~~~~~~~~~~~~~~v~v~D~~t--g~~~~~~~~~------~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~   98 (373)
T d2madh_          27 APGADGRRSYINLPAHHSAIIQQWVLDAGS--GSILGHVNGG------FLPNPVAAHSGSEFALASTSFSRIAKGKRTDY   98 (373)
T ss_pred             ccCCCCCEEEEEcccccCCCceEEEEECCC--CCEEEEEeCC------CCccEEEcCCCCEEEEEeecCCcccccccceE
Confidence            578899998887432    35899999877  5443 34322      12357899999998776433211 01123467


Q ss_pred             EEEEECCCCCccCcEEeeecCC--------ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcC
Q 008927          223 IVAIALNGQNIQEPKVLVSGSD--------FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG  294 (548)
Q Consensus       223 l~~idl~~g~~~~~~~L~~~~~--------~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~  294 (548)
                      |.++|+.+++   .........        ......|+|||+.+++..++.      ...+.+.+... +++   .... 
T Consensus        99 v~v~D~~t~~---~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~------~~~~~~~~~~~-~~~---~~~~-  164 (373)
T d2madh_          99 VEVFDPVTFL---PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA------GPAVGLVVQGG-SSD---DQLL-  164 (373)
T ss_pred             EEEEECCCCc---EEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC------CCceEEeeccC-CeE---EEEe-
Confidence            8999999987   433222111        112357899999887655432      23455555542 221   1111 


Q ss_pred             CCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEe
Q 008927          295 FDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLA  339 (548)
Q Consensus       295 ~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~  339 (548)
                            .......++|||+ +++.... +|  .+++++..+++...
T Consensus       165 ------~~~~~~~~s~~g~~~~v~~~~-dg--~~~~~~~~~~~~~~  201 (373)
T d2madh_         165 ------SSPTCYHIHPGAPSTFYLLCA-QG--GLAKTDHAGGAAGA  201 (373)
T ss_pred             ------ccceeEEEecCCCcEEEEEcC-CC--eEEEEEcCCceeeE
Confidence                  1234467899999 5444333 44  46667776666543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.45  E-value=2.6e-05  Score=75.26  Aligned_cols=250  Identities=13%  Similarity=0.077  Sum_probs=129.0

Q ss_pred             CeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCcee-cCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       147 g~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~-lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      |..|.++| .|||++-..++|+++++++  ++... +...    ......+.+++||+.+++  .....   .....|+.
T Consensus        44 G~~~D~~G-~Ly~~D~~~g~I~ri~p~g--~~~~~~~~~~----~~~p~gla~~~dG~l~va--~~~~~---~~~~~i~~  111 (319)
T d2dg1a1          44 GLNFDRQG-QLFLLDVFEGNIFKINPET--KEIKRPFVSH----KANPAAIKIHKDGRLFVC--YLGDF---KSTGGIFA  111 (319)
T ss_dssp             EEEECTTS-CEEEEETTTCEEEEECTTT--CCEEEEEECS----SSSEEEEEECTTSCEEEE--ECTTS---SSCCEEEE
T ss_pred             eCEECCCC-CEEEEECCCCEEEEEECCC--CeEEEEEeCC----CCCeeEEEECCCCCEEEE--ecCCC---ccceeEEE
Confidence            34554444 5999988888999999987  44333 3222    123456789999985443  32210   12357889


Q ss_pred             EECCCCCccCcEEeeecCC---ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccC
Q 008927          226 IALNGQNIQEPKVLVSGSD---FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES  302 (548)
Q Consensus       226 idl~~g~~~~~~~L~~~~~---~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~  302 (548)
                      ++..++.   ...+.....   ......++|||+ |.+...... .......+|.++.+. +.+   ..+...-    ..
T Consensus       112 ~~~~~~~---~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~-~~~~~g~v~~~~~dg-~~~---~~~~~~~----~~  178 (319)
T d2dg1a1         112 ATENGDN---LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGY-STNPLGGVYYVSPDF-RTV---TPIIQNI----SV  178 (319)
T ss_dssp             ECTTSCS---CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCB-TTBCCEEEEEECTTS-CCE---EEEEEEE----SS
T ss_pred             EcCCCce---eeeeccCCCcccCCcceeEEeccc-eeecccccc-cccCcceeEEEeccc-cee---EEEeecc----ce
Confidence            9988887   555543321   234567999997 544432211 111245677776652 222   2222211    22


Q ss_pred             CcCceECcCCcEEEEEeCCCCeeeEEEEeccCC--eeEeecc-cccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC
Q 008927          303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN--EVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (548)
Q Consensus       303 ~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g--~~~~l~~-~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g  379 (548)
                      ...+.|+|||+.+|++|...  ..|++++++..  ....... .........   +.....+.   .+| .|+++..  +
T Consensus       179 pnGia~s~dg~~lyvad~~~--~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~---~PdGl~vD---~~G-~l~Va~~--~  247 (319)
T d2dg1a1         179 ANGIALSTDEKVLWVTETTA--NRLHRIALEDDGVTIQPFGATIPYYFTGHE---GPDSCCID---SDD-NLYVAMY--G  247 (319)
T ss_dssp             EEEEEECTTSSEEEEEEGGG--TEEEEEEECTTSSSEEEEEEEEEEECCSSS---EEEEEEEB---TTC-CEEEEEE--T
T ss_pred             eeeeeeccccceEEEecccC--CceEEEEEcCCCceeccccceeeeccCCcc---ceeeeeEc---CCC-CEEEEEc--C
Confidence            34579999999444555423  36777776432  1111110 000000000   00113332   244 4655443  3


Q ss_pred             eEEEEEEECCCCceEeecCCCc------eeEee--eecCCEEEEEEecC--CCCCeEEEEEcC
Q 008927          380 RSYLGILDDFGHSLSLLDIPFT------DIDNI--TLGNDCLFVEGASG--VEPSSVAKVTLD  432 (548)
Q Consensus       380 ~~~L~~~dl~~g~~~~l~~~~~------~~~~~--s~d~~~l~~~~ss~--~~p~~l~~~d~~  432 (548)
                      ...|.++|.++..+..+..|..      ....+  .++...++++....  .....||+++..
T Consensus       248 ~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~  310 (319)
T d2dg1a1         248 QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  310 (319)
T ss_dssp             TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             CCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCC
Confidence            3468899986555566655431      11122  33445666555432  234578888764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.44  E-value=2.9e-06  Score=83.43  Aligned_cols=250  Identities=9%  Similarity=-0.064  Sum_probs=130.7

Q ss_pred             CCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeC---------CCCeEEEEeCCCCCCCceec
Q 008927          112 AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNY---------KDQRLYKHSIDSKDSSPLPI  182 (548)
Q Consensus       112 ~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~---------~~~~Ly~~~~~~~~~~~~~l  182 (548)
                      .|...||.++.++ ++....+...+.        .+.+|++||+.|++.+.         +++.|+++|+.+  +++..-
T Consensus        43 ~g~~~~~~~d~~~-~~~~~~~~~~~~--------~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t--~~~~~~  111 (368)
T d1mdah_          43 AGTTENWVSCAGC-GVTLGHSLGAFL--------SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT--FLPIAD  111 (368)
T ss_dssp             CSSEEEEEEETTT-TEEEEEEEECTT--------CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT--CCEEEE
T ss_pred             CCcceEEEEeCCC-CcEEEEEeCCCC--------CcceECCCCCEEEEEcccCccccccccCCeEEEEECCC--CcEeee
Confidence            4667788887653 344444433221        23478889999998763         234699999887  544322


Q ss_pred             CCCCCCC----CceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC--------ceeeeE
Q 008927          183 TPDYGEP----LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD--------FYAFPR  250 (548)
Q Consensus       183 T~~~~~~----~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~--------~~~~p~  250 (548)
                      .+.....    ......+.|||||++|++...+        ...|+++|+++++   .......+.        ......
T Consensus       112 i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~--------~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~v~  180 (368)
T d1mdah_         112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFG--------SSAAAGLSVPGAS---DDQLTKSASCFHIHPGAAATHYL  180 (368)
T ss_dssp             EEETTSCSCCBSCCTTSEEECTTSSCEEEEECS--------SSCEEEEEETTTE---EEEEEECSSCCCCEEEETTEEEC
T ss_pred             ecCCccceecccCCccceEECCCCCEEEEEeCC--------CCeEEEEECCCCc---EeEEeeccCcceEccCCCceEEE
Confidence            1110000    0112357899999998764322        1468889999987   333222211        112346


Q ss_pred             ECCCCCEEEEEEecCCCC----------C------------------CCCceEEEEEecCCCceeeeEEEcCCCC-----
Q 008927          251 MDPRGERMAWIEWHHPNM----------P------------------WDKAELWVGYISENGDVYKRVCVAGFDP-----  297 (548)
Q Consensus       251 ~SPDGk~La~~~~~~~~~----------p------------------~~~~~L~v~~~~~~g~~~~~~~l~~~~~-----  297 (548)
                      +++||+.+++........          +                  ....++++.++.. +.............     
T Consensus       181 ~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~  259 (368)
T d1mdah_         181 GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPA-AGATMKAAIDGNESGRKAD  259 (368)
T ss_dssp             CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCS-SCCEEECCCCSSCTHHHHT
T ss_pred             EcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecC-CceEEEeecccccceeeee
Confidence            789998665442211100          0                  0123556666653 22111000010000     


Q ss_pred             -CcccCCcCceECcCCc-EEEEEeCC-----CCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCE
Q 008927          298 -TIVESPTEPKWSSKGE-LFFVTDRK-----NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNL  370 (548)
Q Consensus       298 -~~~~~~~~~~wspDG~-L~~~sd~~-----~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~  370 (548)
                       ..........+++|++ +|+....+     .....|+.+|..+++.....+....   +      ....++|   |++.
T Consensus       260 ~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~---~------~~~a~sp---DG~~  327 (368)
T d1mdah_         260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD---S------DAIIAAQ---DGAS  327 (368)
T ss_dssp             TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE---E------CEEEECC---SSSC
T ss_pred             eecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCc---e------eEEEECC---CCCE
Confidence             0001234568889988 55544321     2346799999988875332221111   1      1244555   7776


Q ss_pred             EEEEEEeCCeEEEEEEECCCCceE-eec
Q 008927          371 IACSYRQNGRSYLGILDDFGHSLS-LLD  397 (548)
Q Consensus       371 l~~~~~~~g~~~L~~~dl~~g~~~-~l~  397 (548)
                      ++|.... +...|+++|.++|+.. .|.
T Consensus       328 ~ly~s~~-~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         328 DNYANSA-GTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EEEEEET-TTTEEEEEESSSCEEEEECC
T ss_pred             EEEEEeC-CCCeEEEEECCCCCEEEEEE
Confidence            6555543 3346899999998754 444

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.43  E-value=1e-05  Score=81.69  Aligned_cols=209  Identities=8%  Similarity=-0.065  Sum_probs=111.9

Q ss_pred             eCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEE
Q 008927          198 FDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWV  277 (548)
Q Consensus       198 ~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v  277 (548)
                      ...|.+.+++|.+...       ..|.++|+++++.  .+.|..+ ......+|||||++|+ +...       ...+.+
T Consensus        26 ~~~~~~~~~~v~~~d~-------g~v~v~D~~t~~v--~~~~~~g-~~~~~v~fSpDG~~l~-~~s~-------dg~v~~   87 (432)
T d1qksa2          26 NDWDLENLFSVTLRDA-------GQIALIDGSTYEI--KTVLDTG-YAVHISRLSASGRYLF-VIGR-------DGKVNM   87 (432)
T ss_dssp             SCCCGGGEEEEEETTT-------TEEEEEETTTCCE--EEEEECS-SCEEEEEECTTSCEEE-EEET-------TSEEEE
T ss_pred             ecCCCCcEEEEEEcCC-------CEEEEEECCCCcE--EEEEeCC-CCeeEEEECCCCCEEE-EEcC-------CCCEEE
Confidence            3345555666655432       4799999999983  3444444 3455679999999996 4421       246888


Q ss_pred             EEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccc-cCCCcccccC
Q 008927          278 GYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAE-FSRPLWVFGI  356 (548)
Q Consensus       278 ~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d-~~~p~w~~~~  356 (548)
                      .|++. ++......+.... .....+..+.|||||+.++++....+  .+.++|.++++.......... .....+..+.
T Consensus        88 ~d~~t-~~~~~~~~i~~~~-~~~~~~~s~~~SpDG~~l~vs~~~~~--~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~  163 (432)
T d1qksa2          88 IDLWM-KEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPP--QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP  163 (432)
T ss_dssp             EETTS-SSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETT--EEEEEETTTCCEEEEEECCEECTTTCCEESCC
T ss_pred             EEeeC-CCceEEEEEecCC-CCCCeEEecccCCCCCEEEEEcCCCC--eEEEEeCccccceeeeccCCccccceeccCCC
Confidence            99874 3311122222211 00033456789999994444332133  467788888887654422110 0000111111


Q ss_pred             c--ceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEee---cCCCce-eEeeeecCCEEEEEEecCCCCCeEEEEE
Q 008927          357 N--SYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL---DIPFTD-IDNITLGNDCLFVEGASGVEPSSVAKVT  430 (548)
Q Consensus       357 ~--~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l---~~~~~~-~~~~s~d~~~l~~~~ss~~~p~~l~~~d  430 (548)
                      .  ...+++   ++..++++..  ....+..+|..+++...+   ..+... --.+++|++++++....   ...+..+|
T Consensus       164 ~~~~v~~s~---dg~~~~vs~~--~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~---~~~v~v~d  235 (432)
T d1qksa2         164 RVAAILASH---YRPEFIVNVK--ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA---RNKLVVID  235 (432)
T ss_dssp             CEEEEEECS---SSSEEEEEET--TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG---GTEEEEEE
T ss_pred             ceeEEEECC---CCCEEEEEEc--cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccc---cceEEEee
Confidence            1  122333   6666655443  334677788877654332   222111 12347888877665543   34677788


Q ss_pred             cCCCce
Q 008927          431 LDDHKL  436 (548)
Q Consensus       431 ~~~~~~  436 (548)
                      .++++.
T Consensus       236 ~~~~~~  241 (432)
T d1qksa2         236 TKEGKL  241 (432)
T ss_dssp             TTTTEE
T ss_pred             cccceE
Confidence            776653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.43  E-value=3.7e-05  Score=76.95  Aligned_cols=207  Identities=11%  Similarity=0.013  Sum_probs=114.0

Q ss_pred             ceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEEEEe
Q 008927           93 GTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS  171 (548)
Q Consensus        93 ~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~~~  171 (548)
                      .+.++. .+.++++..+  ++|+-.||-...   ++...-.+..    ..++   +.+|+|||++|+ +..+++.|.+.+
T Consensus        23 ~~~~~~d~~~~~~V~~~--~dg~v~vwD~~t---~~~~~~l~~g----~~~~---~vafSPDGk~l~-~~~~d~~v~vwd   89 (426)
T d1hzua2          23 KQLNDLDLPNLFSVTLR--DAGQIALVDGDS---KKIVKVIDTG----YAVH---ISRMSASGRYLL-VIGRDARIDMID   89 (426)
T ss_dssp             SCCSCCCGGGEEEEEET--TTTEEEEEETTT---CSEEEEEECC----SSEE---EEEECTTSCEEE-EEETTSEEEEEE
T ss_pred             cccccCCCCeEEEEEEc--CCCEEEEEECCC---CcEEEEEeCC----CCee---EEEECCCCCEEE-EEeCCCCEEEEE
Confidence            344444 5667777654  357777775432   2332222222    1222   347899998775 445678899999


Q ss_pred             CCCCCCCcee---cCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC-----
Q 008927          172 IDSKDSSPLP---ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS-----  243 (548)
Q Consensus       172 ~~~~~~~~~~---lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~-----  243 (548)
                      +++  ++...   +....+ ......++.|||||++|+......        ..+..+|..++.   ...+....     
T Consensus        90 ~~t--~~~~~~~~i~~~~~-~~~~~~s~~~spDG~~l~v~~~~~--------~~v~i~d~~~~~---~~~~~~~~~~~~~  155 (426)
T d1hzua2          90 LWA--KEPTKVAEIKIGIE-ARSVESSKFKGYEDRYTIAGAYWP--------PQFAIMDGETLE---PKQIVSTRGMTVD  155 (426)
T ss_dssp             TTS--SSCEEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEES--------SEEEEEETTTCC---EEEEEECCEECSS
T ss_pred             ccC--CceeEEEEEeCCCC-CcceEEeeeecCCCCEEEEeecCC--------CeEEEEcCCccc---eeEEeeccCCCcc
Confidence            987  54432   222210 011123567899999986654332        467888988886   44332221     


Q ss_pred             -------CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEE
Q 008927          244 -------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF  316 (548)
Q Consensus       244 -------~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~  316 (548)
                             ........|+|++.+++...       +...+.+.+... +.......+...     .......|+|||++++
T Consensus       156 ~~~~~~~~~~~~i~~s~d~~~~~~~~~-------~~~~i~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~  222 (426)
T d1hzua2         156 TQTYHPEPRVAAIIASHEHPEFIVNVK-------ETGKVLLVNYKD-IDNLTVTSIGAA-----PFLADGGWDSSHRYFM  222 (426)
T ss_dssp             SCCEESCCCEEEEEECSSSSEEEEEET-------TTTEEEEEECSS-SSSCEEEEEECC-----SSEEEEEECTTSCEEE
T ss_pred             ceeecCCCceeEEEECCCCCEEEEecC-------CCCeEEEEEecc-ccceeeEEeccC-----CccEeeeECCCCcEEE
Confidence                   11223456777776654331       134566666553 221112223222     3456788999999666


Q ss_pred             EEeCCCCeeeEEEEeccCCeeEeec
Q 008927          317 VTDRKNGFWNLHKWIESNNEVLAIY  341 (548)
Q Consensus       317 ~sd~~~g~~~Ly~~d~~~g~~~~l~  341 (548)
                      ++..  +...+..++..+++.....
T Consensus       223 ~a~~--~~~~~~~~~~~~~~~~~~~  245 (426)
T d1hzua2         223 TAAN--NSNKVAVIDSKDRRLSALV  245 (426)
T ss_dssp             EEET--TCSEEEEEETTTTEEEEEE
T ss_pred             eeee--cccceeeeecccccEEEEe
Confidence            6654  2245667777777765544

>d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: PepX catalytic domain-like
domain: Alpha-amino acid ester hydrolase
species: Xanthomonas citri [TaxId: 346]

Probab=98.42  E-value=2e-07  Score=93.11  Aligned_cols=68  Identities=15%  Similarity=0.260  Sum_probs=52.4

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEcc--Cccccc-------cCccChHHHHHHhcCcEEEEeCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG--GPTSEA-------RGILNLSIQYWTSRGWAFVDVNY  532 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHG--GP~~~~-------~~~~~~~~Q~~asrGyaVl~~Ny  532 (548)
                      +.|.++.+ ||.+|++.||.|++       .+++|+||..|+  +.....       ...+....|+|+++||+|+.+|+
T Consensus        25 ~~v~i~~r-DG~~L~~~v~~P~~-------~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d~   96 (381)
T d1mpxa2          25 REVMIPMR-DGVKLHTVIVLPKG-------AKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDV   96 (381)
T ss_dssp             EEEEEECT-TSCEEEEEEEEETT-------CCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEEC
T ss_pred             EEEEEECC-CCCEEEEEEEEeCC-------CCCccEEEEEccCCCCCcccccccccccccchhHHHHHHhCCCEEEEEec
Confidence            56899998 99999999999965       468999999873  322111       11234567999999999999999


Q ss_pred             CCCCC
Q 008927          533 GGSTG  537 (548)
Q Consensus       533 RGStG  537 (548)
                      ||+.+
T Consensus        97 RG~g~  101 (381)
T d1mpxa2          97 RGKYG  101 (381)
T ss_dssp             TTSTT
T ss_pred             CccCC
Confidence            99544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.41  E-value=0.00013  Score=70.17  Aligned_cols=217  Identities=12%  Similarity=0.080  Sum_probs=118.4

Q ss_pred             CccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccC-CCCCCccccceeeCCeeeEEECCEEEEEeCC----
Q 008927           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT-PKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK----  163 (548)
Q Consensus        89 ~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt-~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~----  163 (548)
                      ..+..|.+++.++|||++..   .+  .|++++.++ +...... +...    .   -.+-++.++| .|+..+..    
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~---~g--~I~ri~p~g-~~~~~~~~~~~~----~---p~gla~~~dG-~l~va~~~~~~~  105 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVF---EG--NIFKINPET-KEIKRPFVSHKA----N---PAAIKIHKDG-RLFVCYLGDFKS  105 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETT---TC--EEEEECTTT-CCEEEEEECSSS----S---EEEEEECTTS-CEEEEECTTSSS
T ss_pred             cCcEeCEECCCCCEEEEECC---CC--EEEEEECCC-CeEEEEEeCCCC----C---eeEEEECCCC-CEEEEecCCCcc
Confidence            55678999983359988642   23  477777653 2222222 1110    0   0112333334 45544422    


Q ss_pred             CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (548)
Q Consensus       164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~  243 (548)
                      ...|+.++..+  +....+.... ....+..+..++|+|. |++......  .......+++++.+++.   .+.+..+-
T Consensus       106 ~~~i~~~~~~~--~~~~~~~~~~-~~~~~~nd~~~d~~G~-l~vtd~~~~--~~~~~g~v~~~~~dg~~---~~~~~~~~  176 (319)
T d2dg1a1         106 TGGIFAATENG--DNLQDIIEDL-STAYCIDDMVFDSKGG-FYFTDFRGY--STNPLGGVYYVSPDFRT---VTPIIQNI  176 (319)
T ss_dssp             CCEEEEECTTS--CSCEEEECSS-SSCCCEEEEEECTTSC-EEEEECCCB--TTBCCEEEEEECTTSCC---EEEEEEEE
T ss_pred             ceeEEEEcCCC--ceeeeeccCC-CcccCCcceeEEeccc-eeecccccc--cccCcceeEEEecccce---eEEEeecc
Confidence            34688888776  5554443321 1234566788999997 444321111  11234689999998887   66666543


Q ss_pred             CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeee---EEEcCCCCCcccCCcCceECcCCcEEEEEeC
Q 008927          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR---VCVAGFDPTIVESPTEPKWSSKGELFFVTDR  320 (548)
Q Consensus       244 ~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~---~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~  320 (548)
                      ..-....|||||++|++.. .      ...+|+.++++.++.....   .........  .........+||.||+....
T Consensus       177 ~~pnGia~s~dg~~lyvad-~------~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~--~~PdGl~vD~~G~l~Va~~~  247 (319)
T d2dg1a1         177 SVANGIALSTDEKVLWVTE-T------TANRLHRIALEDDGVTIQPFGATIPYYFTGH--EGPDSCCIDSDDNLYVAMYG  247 (319)
T ss_dssp             SSEEEEEECTTSSEEEEEE-G------GGTEEEEEEECTTSSSEEEEEEEEEEECCSS--SEEEEEEEBTTCCEEEEEET
T ss_pred             ceeeeeeeccccceEEEec-c------cCCceEEEEEcCCCceeccccceeeeccCCc--cceeeeeEcCCCCEEEEEcC
Confidence            3344578999999886543 2      1458999999865542111   111110000  11234567788876655432


Q ss_pred             CCCeeeEEEEeccCCeeEee
Q 008927          321 KNGFWNLHKWIESNNEVLAI  340 (548)
Q Consensus       321 ~~g~~~Ly~~d~~~g~~~~l  340 (548)
                       .  ..|.++++++..+..+
T Consensus       248 -~--g~V~~~~p~G~~l~~i  264 (319)
T d2dg1a1         248 -Q--GRVLVFNKRGYPIGQI  264 (319)
T ss_dssp             -T--TEEEEECTTSCEEEEE
T ss_pred             -C--CEEEEECCCCcEEEEE
Confidence             3  3788999854444444

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.40  E-value=3.5e-05  Score=77.60  Aligned_cols=201  Identities=10%  Similarity=-0.019  Sum_probs=112.7

Q ss_pred             CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEEEEeCCCCCCC
Q 008927           99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSS  178 (548)
Q Consensus        99 g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~  178 (548)
                      .+.++++..++  .|.-.||-...   ++...-.+..    ..+|   +.+|+|||++|+..+ +++.|.++++.+  ++
T Consensus        30 ~~~~~~v~~~d--~g~v~v~D~~t---~~v~~~~~~g----~~~~---~v~fSpDG~~l~~~s-~dg~v~~~d~~t--~~   94 (432)
T d1qksa2          30 LENLFSVTLRD--AGQIALIDGST---YEIKTVLDTG----YAVH---ISRLSASGRYLFVIG-RDGKVNMIDLWM--KE   94 (432)
T ss_dssp             GGGEEEEEETT--TTEEEEEETTT---CCEEEEEECS----SCEE---EEEECTTSCEEEEEE-TTSEEEEEETTS--SS
T ss_pred             CCcEEEEEEcC--CCEEEEEECCC---CcEEEEEeCC----CCee---EEEECCCCCEEEEEc-CCCCEEEEEeeC--CC
Confidence            34566666543  46655664322   2333222222    1222   247999999886554 678899999876  44


Q ss_pred             ce---ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC------------
Q 008927          179 PL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS------------  243 (548)
Q Consensus       179 ~~---~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~------------  243 (548)
                      .+   .|....+ ...-...+.|||||++|+......        ..|.++|.++++   ........            
T Consensus        95 ~~~~~~i~~~~~-~~~~~~s~~~SpDG~~l~vs~~~~--------~~v~i~d~~t~~---~~~~~~~~~~~~~~~~~~~~  162 (432)
T d1qksa2          95 PTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWP--------PQYVIMDGETLE---PKKIQSTRGMTYDEQEYHPE  162 (432)
T ss_dssp             CCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEET--------TEEEEEETTTCC---EEEEEECCEECTTTCCEESC
T ss_pred             ceEEEEEecCCC-CCCeEEecccCCCCCEEEEEcCCC--------CeEEEEeCcccc---ceeeeccCCccccceeccCC
Confidence            32   2322210 011123456899999976654432        468899999987   44332211            


Q ss_pred             CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCC
Q 008927          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG  323 (548)
Q Consensus       244 ~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g  323 (548)
                      .....-.+||||+++++...       +..++++++... ++......+..+     .......++|||+.+++..... 
T Consensus       163 ~~~~~v~~s~dg~~~~vs~~-------~~~~i~~~d~~~-~~~~~~~~i~~g-----~~~~~~~~spdg~~~~va~~~~-  228 (432)
T d1qksa2         163 PRVAAILASHYRPEFIVNVK-------ETGKILLVDYTD-LNNLKTTEISAE-----RFLHDGGLDGSHRYFITAANAR-  228 (432)
T ss_dssp             CCEEEEEECSSSSEEEEEET-------TTTEEEEEETTC-SSEEEEEEEECC-----SSEEEEEECTTSCEEEEEEGGG-
T ss_pred             CceeEEEECCCCCEEEEEEc-------cCCeEEEEEccC-CCcceEEEEccc-----CccccceECCCCCEEEEecccc-
Confidence            11223467999998765442       245788888873 331122223322     3456788999999444443312 


Q ss_pred             eeeEEEEeccCCeeEeec
Q 008927          324 FWNLHKWIESNNEVLAIY  341 (548)
Q Consensus       324 ~~~Ly~~d~~~g~~~~l~  341 (548)
                       ..+..++.++++.....
T Consensus       229 -~~v~v~d~~~~~~~~~~  245 (432)
T d1qksa2         229 -NKLVVIDTKEGKLVAIE  245 (432)
T ss_dssp             -TEEEEEETTTTEEEEEE
T ss_pred             -ceEEEeecccceEEEEe
Confidence             35667787777765443

>d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase
domain: Carboxylesterase
species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]

Probab=98.40  E-value=1.2e-07  Score=93.91  Aligned_cols=71  Identities=17%  Similarity=0.126  Sum_probs=55.7

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccccc---CccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---GILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~---~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      ..+..++++. ||.+|...+|.|++.      ..+.|+||++|||-+..-.   ..+....+.++++||+|+.+|||.+.
T Consensus        78 ~~~~~~i~~~-dg~~i~~~iy~P~~~------~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla~  150 (358)
T d1jkma_          78 ETSTETILGV-DGNEITLHVFRPAGV------EGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAW  150 (358)
T ss_dssp             EEEEEEEECT-TSCEEEEEEEEETTC------CSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSE
T ss_pred             cEEEEEEeCC-CCCEEEEEEEecCCC------CCCCCeEEEecCCeeeeccccccccchHHHHHHhhhheeeeeeecccc
Confidence            3566788887 999999999999762      3468999999999543221   22345678999999999999999985


Q ss_pred             C
Q 008927          537 G  537 (548)
Q Consensus       537 G  537 (548)
                      +
T Consensus       151 ~  151 (358)
T d1jkma_         151 T  151 (358)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Thioesterases
domain: Myristoyl-ACP-specific thioesterase
species: Vibrio harveyi [TaxId: 669]

Probab=98.36  E-value=4.3e-07  Score=87.64  Aligned_cols=67  Identities=15%  Similarity=0.167  Sum_probs=53.5

Q ss_pred             EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCC
Q 008927          464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGL  538 (548)
Q Consensus       464 i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGy  538 (548)
                      -.++.. ||..|++|.++|++.     ..++.|+||++||.....  ..|...+++|+++||.|+.+|+||..|.
T Consensus         7 h~~~~~-dg~~l~~w~~~p~~~-----~~~~~~~Vvi~HG~~~~~--~~~~~~a~~L~~~G~~Vi~~D~rGh~G~   73 (302)
T d1thta_           7 HVLRVN-NGQELHVWETPPKEN-----VPFKNNTILIASGFARRM--DHFAGLAEYLSTNGFHVFRYDSLHHVGL   73 (302)
T ss_dssp             EEEEET-TTEEEEEEEECCCTT-----SCCCSCEEEEECTTCGGG--GGGHHHHHHHHTTTCCEEEECCCBCC--
T ss_pred             eEEEcC-CCCEEEEEEecCcCC-----CCCCCCEEEEeCCCcchH--HHHHHHHHHHHHCCCEEEEecCCCCCCC
Confidence            346777 999999999999752     245679999999976544  3577889999999999999999996554

>d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Dienelactone hydrolase
domain: Dienelactone hydrolase
species: Pseudomonas sp., B13 [TaxId: 306]

Probab=98.31  E-value=1e-07  Score=88.42  Aligned_cols=70  Identities=16%  Similarity=0.186  Sum_probs=54.0

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCCh
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSS  540 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~  540 (548)
                      .|.|+|++. ||.++++|++.|+        ++++|+||++|+++....  ......+.||++||.|+.||+.|..+++.
T Consensus         3 ~e~v~~~~~-dg~~~~a~~~~P~--------~~~~P~vl~~h~~~G~~~--~~~~~a~~lA~~Gy~vl~pd~~~~~~~~~   71 (233)
T d1dina_           3 TEGISIQSY-DGHTFGALVGSPA--------KAPAPVIVIAQEIFGVNA--FMRETVSWLVDQGYAAVCPDLYARQAPGT   71 (233)
T ss_dssp             CTTCCEECT-TSCEECEEEECCS--------SSSEEEEEEECCTTBSCH--HHHHHHHHHHHTTCEEEEECGGGGTSTTC
T ss_pred             ceEEEEEcC-CCCEEEEEEECCC--------CCCceEEEEeCCCCCCCH--HHHHHHHHHHhcCCcceeeeeccCCCcCc
Confidence            356789998 9999999999995        357899999997653211  12234688999999999999988777664


Q ss_pred             h
Q 008927          541 V  541 (548)
Q Consensus       541 ~  541 (548)
                      .
T Consensus        72 ~   72 (233)
T d1dina_          72 A   72 (233)
T ss_dssp             B
T ss_pred             c
Confidence            3

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.30  E-value=0.0001  Score=69.99  Aligned_cols=224  Identities=12%  Similarity=0.101  Sum_probs=124.9

Q ss_pred             cCCHHHHhcCCCcc-CceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEE-EC
Q 008927           78 PLTADVVSGASKRL-GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI-FG  154 (548)
Q Consensus        78 pit~~~l~~~~~~~-~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~-~~  154 (548)
                      |++++.|......| ..|.|++ .+.+||+...     ...|++++..+ +..+.+ ..+.    .     .++..+ .+
T Consensus         6 ~~~~~~~~~~~~~LgEgp~wd~~~~~l~wvDi~-----~~~I~r~d~~~-g~~~~~-~~~~----~-----~~~i~~~~d   69 (295)
T d2ghsa1           6 PFAGRVLDETPMLLGEGPTFDPASGTAWWFNIL-----ERELHELHLAS-GRKTVH-ALPF----M-----GSALAKISD   69 (295)
T ss_dssp             CCCCEEEECSCCSBEEEEEEETTTTEEEEEEGG-----GTEEEEEETTT-TEEEEE-ECSS----C-----EEEEEEEET
T ss_pred             ceeEEEEcCCCCeeeeCCeEECCCCEEEEEECC-----CCEEEEEECCC-CeEEEE-ECCC----C-----cEEEEEecC
Confidence            55666555543444 5789998 8999999743     23477776552 222222 1111    1     112223 34


Q ss_pred             CEEEEEeCCCCeEEEEeCCCCCCCceecCCCCC-CCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc
Q 008927          155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG-EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (548)
Q Consensus       155 ~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~-~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~  233 (548)
                      +.|++..  ...|+++++++  ++.+.+..... ....+..+..++|+|...+.......   ......+|.++  .++ 
T Consensus        70 g~l~va~--~~gl~~~d~~t--g~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~---~~~~g~l~~~~--~g~-  139 (295)
T d2ghsa1          70 SKQLIAS--DDGLFLRDTAT--GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA---ETGAGSIYHVA--KGK-  139 (295)
T ss_dssp             TEEEEEE--TTEEEEEETTT--CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC---CTTCEEEEEEE--TTE-
T ss_pred             CCEEEEE--eCccEEeeccc--ceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccc---cccceeEeeec--CCc-
Confidence            5666665  35799999987  77776654321 12357788899999984333322211   11235677665  455 


Q ss_pred             cCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc-e-eeeEEEcCCCCCcccCCcCceECcC
Q 008927          234 QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-V-YKRVCVAGFDPTIVESPTEPKWSSK  311 (548)
Q Consensus       234 ~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~-~-~~~~~l~~~~~~~~~~~~~~~wspD  311 (548)
                        .+.+..+...-....||||++.|.|...       ....||.++++..+. . .+........ .............+
T Consensus       140 --~~~~~~~~~~~Ng~~~s~d~~~l~~~dt-------~~~~I~~~~~d~~~~~~~~~~~~~~~~~-~~~g~pdG~~vD~~  209 (295)
T d2ghsa1         140 --VTKLFADISIPNSICFSPDGTTGYFVDT-------KVNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDAE  209 (295)
T ss_dssp             --EEEEEEEESSEEEEEECTTSCEEEEEET-------TTCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECTT
T ss_pred             --EEEEeeccCCcceeeecCCCceEEEeec-------ccceeeEeeecccccccccceEEEeccC-cccccccceEEcCC
Confidence              5666554444456789999999876652       146799998864322 1 1122211111 00022234456777


Q ss_pred             CcEEEEEeCCCCeeeEEEEeccCCeeEee
Q 008927          312 GELFFVTDRKNGFWNLHKWIESNNEVLAI  340 (548)
Q Consensus       312 G~L~~~sd~~~g~~~Ly~~d~~~g~~~~l  340 (548)
                      |.|++..-. .  ..|+++++++.....+
T Consensus       210 GnlWva~~~-~--g~V~~~dp~G~~~~~i  235 (295)
T d2ghsa1         210 GHIWNARWG-E--GAVDRYDTDGNHIARY  235 (295)
T ss_dssp             SCEEEEEET-T--TEEEEECTTCCEEEEE
T ss_pred             CCEEeeeeC-C--CceEEecCCCcEeeEe
Confidence            776655433 2  3689999865544444

>d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: IroE-like
domain: Enterobactin and salmochelin hydrolase IroE
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=1.6e-07  Score=88.60  Aligned_cols=81  Identities=16%  Similarity=0.138  Sum_probs=64.5

Q ss_pred             ccCCeEEEeeccCCC-eEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          458 FSLPELIEFPTEVPG-QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       458 ~~~pe~i~~~s~~dG-~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      +.+.+.++|++. || .++..||++|.+  ++  ++++||+|+++|||++...... ....|+.+.+|++|+.++||++.
T Consensus        10 ~~~~~~~~~~s~-dg~~~~~~~v~~P~~--~~--~~~~yPvi~~lhG~~~~~~~~~-~~~~~~~~~~~~~vV~v~~~~~~   83 (265)
T d2gzsa1          10 FYHFSATSFDSV-DGTRHYRVWTAVPNT--TA--PASGYPILYMLDGNAVMDRLDD-ELLKQLSEKTPPVIVAVGYQTNL   83 (265)
T ss_dssp             SEEEEEEEEECT-TSSCEEEEEEEEESS--CC--CTTCEEEEEESSHHHHHHHCCH-HHHHHHTTSCCCEEEEEEESSSS
T ss_pred             cceeEEEEEEcC-CCCEEEEEEEEcCCC--CC--CCCCceEEEEecCcchhhhHHH-HHHHHHHhcCCCeEEEecCCCCC
Confidence            445788999998 88 479999999965  55  3789999999999987554322 24457788899999999999999


Q ss_pred             CCChhhhh
Q 008927          537 GLSSVPST  544 (548)
Q Consensus       537 GyG~~f~~  544 (548)
                      +++...+.
T Consensus        84 ~~~~~~r~   91 (265)
T d2gzsa1          84 PFDLNSRA   91 (265)
T ss_dssp             SCCHHHHH
T ss_pred             cCcccccc
Confidence            98876543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.29  E-value=0.00025  Score=71.10  Aligned_cols=259  Identities=9%  Similarity=0.005  Sum_probs=138.5

Q ss_pred             EECCEEEEEeCCC----CeEEEEeCCCCCCCceecCCC---CCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 008927          152 IFGDTVIFSNYKD----QRLYKHSIDSKDSSPLPITPD---YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (548)
Q Consensus       152 ~~~~~i~F~~~~~----~~Ly~~~~~~~~~~~~~lT~~---~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~  224 (548)
                      ..|+..+|.....    ..+|+.....  ++.+.|-..   .++.........+||||++|+|.....+.    ....|+
T Consensus        81 ~~g~~y~~~~~~~~~~~~~~~~~~~~~--~~~evllD~n~la~~~~~~~~~~~~Spd~~~la~s~d~~G~----e~~~l~  154 (430)
T d1qfma1          81 KKGKRYFYFYNTGLQNQRVLYVQDSLE--GEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGS----DWVTIK  154 (430)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSSS--SCCEEEECGGGGCSSSCEEEEEEEECTTSSEEEEEEEETTC----SCEEEE
T ss_pred             EeCCEEEEEEecCCCccceEEeccccC--CCeeeecchhhhcccccceecceEecCCCCEEEEEeccccC----chheeE
Confidence            3466655553221    2456555443  444443221   01122345567899999999987544322    357899


Q ss_pred             EEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCC--------CCceEEEEEecCCCceeeeEEEcCCC
Q 008927          225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--------DKAELWVGYISENGDVYKRVCVAGFD  296 (548)
Q Consensus       225 ~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~--------~~~~L~v~~~~~~g~~~~~~~l~~~~  296 (548)
                      ++|+++|+   .....-.......+.|++|++.|+|+..+.+....        ...++|...+..+ . .+..++....
T Consensus       155 v~Dl~tg~---~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~-~-~~d~~v~~e~  229 (430)
T d1qfma1         155 FMKVDGAK---ELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD-Q-SEDILCAEFP  229 (430)
T ss_dssp             EEETTTTE---EEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC-G-GGCEEEECCT
T ss_pred             EeccCcce---ecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCC-c-cccccccccc
Confidence            99999997   32211111113567899999999999865432211        1247888887642 2 1233443332


Q ss_pred             CCcccCCcCceECcCCc-EEEEEeC-CCCeeeEEEEeccCCee--------EeecccccccCCCcccccCcceeeeeecC
Q 008927          297 PTIVESPTEPKWSSKGE-LFFVTDR-KNGFWNLHKWIESNNEV--------LAIYSLDAEFSRPLWVFGINSYEIIQSHG  366 (548)
Q Consensus       297 ~~~~~~~~~~~wspDG~-L~~~sd~-~~g~~~Ly~~d~~~g~~--------~~l~~~~~d~~~p~w~~~~~~~~~~~~~~  366 (548)
                      .. .........+.||+ +++.... ..+...+|.+++.....        ..+... .  .. .+     .+...    
T Consensus       230 d~-~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~--~~-~~-----~~~~~----  295 (430)
T d1qfma1         230 DE-PKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN-F--EG-EY-----DYVTN----  295 (430)
T ss_dssp             TC-TTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS-S--SS-CE-----EEEEE----
T ss_pred             cC-CceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecc-c--cc-ce-----EEEec----
Confidence            01 01223345688999 4443332 13445688888654321        111110 0  00 00     11111    


Q ss_pred             CCCEEEEEEEeCC-eEEEEEEECCCCc---eEeecC-CCc-ee-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          367 EKNLIACSYRQNG-RSYLGILDDFGHS---LSLLDI-PFT-DI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       367 d~~~l~~~~~~~g-~~~L~~~dl~~g~---~~~l~~-~~~-~~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      +++.+++..+.++ ...|+.++++...   ++.|-. ... .+ ..++..++.|++.... +..+.|.++++++++.
T Consensus       296 ~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~-~~~~~l~v~~~~~~~~  371 (430)
T d1qfma1         296 EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH-DVKNTLQLHDLATGAL  371 (430)
T ss_dssp             ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE-TTEEEEEEEETTTCCE
T ss_pred             CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEc-CCEeEEEEEECCCCcE
Confidence            4667777666543 5789999887653   344432 222 22 3335566777655543 4567899999888764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.29  E-value=0.0005  Score=64.01  Aligned_cols=279  Identities=11%  Similarity=-0.017  Sum_probs=136.2

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L  167 (548)
                      ..+..++++| |+.++- ..   ++|...||.....   .........-  ...+.   .-.|++++..++  ...++.+
T Consensus        13 ~~V~~l~~s~dg~~l~s-~s---~Dg~v~vWd~~~~---~~~~~~~~~h--~~~v~---~v~~~~~g~~~~--~~~d~~v   78 (299)
T d1nr0a2          13 KAITALSSSADGKTLFS-AD---AEGHINSWDISTG---ISNRVFPDVH--ATMIT---GIKTTSKGDLFT--VSWDDHL   78 (299)
T ss_dssp             SCEEEEEECTTSSEEEE-EE---TTSCEEEEETTTC---CEEECSSCSC--SSCEE---EEEECTTSCEEE--EETTTEE
T ss_pred             CCcEEEEECCCCCEEEE-Ec---CCCeEEEEECCCC---cEEEEEcCCC--CCcEE---EEEeeccceeec--ccceeeE
Confidence            4567788999 665543 22   2577778866432   3333222110  11111   124555554332  2246667


Q ss_pred             EEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCcee
Q 008927          168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYA  247 (548)
Q Consensus       168 y~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~  247 (548)
                      .+.+..+  .....................++|||+.++... +         ..+..++..  +   ...+.... ...
T Consensus        79 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~---------~~i~~~~~~--~---~~~~~~~~-~~~  140 (299)
T d1nr0a2          79 KVVPAGG--SGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-Y---------KHIAIYSHG--K---LTEVPISY-NSS  140 (299)
T ss_dssp             EEECSSS--SSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-S---------SEEEEEETT--E---EEEEECSS-CEE
T ss_pred             EEeccCC--ccccccccccccccccccccccccccccccccc-c---------ccccccccc--c---cccccccc-ccc
Confidence            7777654  222111110000012234567999998765542 2         235555532  2   22222221 234


Q ss_pred             eeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeE
Q 008927          248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL  327 (548)
Q Consensus       248 ~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~L  327 (548)
                      ...|+||++.|+...        ....|.+.+++. ++......+.. .    ..+....|+||+++++..+. ++  .|
T Consensus       141 ~~~~s~~~~~l~~g~--------~dg~i~~~d~~~-~~~~~~~~~~~-~----~~i~~~~~~~~~~~l~~~~~-d~--~i  203 (299)
T d1nr0a2         141 CVALSNDKQFVAVGG--------QDSKVHVYKLSG-ASVSEVKTIVH-P----AEITSVAFSNNGAFLVATDQ-SR--KV  203 (299)
T ss_dssp             EEEECTTSCEEEEEE--------TTSEEEEEEEET-TEEEEEEEEEC-S----SCEEEEEECTTSSEEEEEET-TS--CE
T ss_pred             ccccccccccccccc--------cccccccccccc-ccccccccccc-c----cccccccccccccccccccc-cc--cc
Confidence            567999999887544        135788999874 44322233332 2    45677899999995555554 44  46


Q ss_pred             EEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeec--CC--Ccee
Q 008927          328 HKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD--IP--FTDI  403 (548)
Q Consensus       328 y~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~--~~--~~~~  403 (548)
                      +.+++.++..........  .....   .....|.|   +++.|+ +...++.  |+++|+.++....+.  ..  ...+
T Consensus       204 ~~~~~~~~~~~~~~~~~~--~h~~~---v~~l~~s~---~~~~l~-sgs~dg~--i~iwd~~~~~~~~~~~~~~~~~~~v  272 (299)
T d1nr0a2         204 IPYSVANNFELAHTNSWT--FHTAK---VACVSWSP---DNVRLA-TGSLDNS--VIVWNMNKPSDHPIIIKGAHAMSSV  272 (299)
T ss_dssp             EEEEGGGTTEESCCCCCC--CCSSC---EEEEEECT---TSSEEE-EEETTSC--EEEEETTCTTSCCEEETTSSTTSCE
T ss_pred             cccccccccccccccccc--ccccc---cccccccc---cccceE-EEcCCCE--EEEEECCCCCcceEEEecCCCCCcE
Confidence            677776654322211100  00111   12245554   555554 4445554  666677766433221  11  2234


Q ss_pred             Eee-eecCCEEEEEEecCCCCCeEEEEEc
Q 008927          404 DNI-TLGNDCLFVEGASGVEPSSVAKVTL  431 (548)
Q Consensus       404 ~~~-s~d~~~l~~~~ss~~~p~~l~~~d~  431 (548)
                      ..+ .++++.|+ .++. +  ..|.++|+
T Consensus       273 ~~~~~~~~~~l~-s~s~-D--~~i~iWdl  297 (299)
T d1nr0a2         273 NSVIWLNETTIV-SAGQ-D--SNIKFWNV  297 (299)
T ss_dssp             EEEEEEETTEEE-EEET-T--SCEEEEEC
T ss_pred             EEEEECCCCEEE-EEeC-C--CEEEEEec
Confidence            433 45666544 3332 2  34555554

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.29  E-value=3.4e-05  Score=75.59  Aligned_cols=245  Identities=11%  Similarity=0.018  Sum_probs=123.6

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +|++++..|++.. .++.|.+.++++  ++.+.+....+ ....+..+.|+|||+.|+....+         ..|.++|+
T Consensus        14 ~~s~dg~~la~~~-~~~~i~iw~~~~--~~~~~~~~l~g-H~~~V~~l~fsp~~~~l~s~s~D---------~~i~vWd~   80 (371)
T d1k8kc_          14 AWNKDRTQIAICP-NNHEVHIYEKSG--NKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTD---------RNAYVWTL   80 (371)
T ss_dssp             EECTTSSEEEEEC-SSSEEEEEEEET--TEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETT---------SCEEEEEE
T ss_pred             EECCCCCEEEEEe-CCCEEEEEECCC--CCEEEEEEecC-CCCCEEEEEECCCCCEEEEEECC---------CeEEEEee
Confidence            6777787777654 456677777765  44433322110 01235677899999987765433         24666777


Q ss_pred             CCCCccCcEEe---eecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcC
Q 008927          229 NGQNIQEPKVL---VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (548)
Q Consensus       229 ~~g~~~~~~~L---~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~  305 (548)
                      .++.   .+..   ......+....|+|||+.|+....        ...+.+.+++............... .  ..+..
T Consensus        81 ~~~~---~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~--------d~~i~i~~~~~~~~~~~~~~~~~~~-~--~~v~~  146 (371)
T d1k8kc_          81 KGRT---WKPTLVILRINRAARCVRWAPNEKKFAVGSG--------SRVISICYFEQENDWWVCKHIKKPI-R--STVLS  146 (371)
T ss_dssp             ETTE---EEEEEECCCCSSCEEEEEECTTSSEEEEEET--------TSSEEEEEEETTTTEEEEEEECTTC-C--SCEEE
T ss_pred             cccc---cccccccccccccccccccccccccceeecc--------cCcceeeeeeccccccccccccccc-c--ccccc
Confidence            7664   3222   222334667789999999875542        2335555555322211111111111 1  34567


Q ss_pred             ceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEee---cc--ccc--------ccCCCcccccCcceeeeeecCCCCEEE
Q 008927          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAI---YS--LDA--------EFSRPLWVFGINSYEIIQSHGEKNLIA  372 (548)
Q Consensus       306 ~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l---~~--~~~--------d~~~p~w~~~~~~~~~~~~~~d~~~l~  372 (548)
                      ..|+|||++++.... ++.-.||  +...+.....   ..  ...        ......++   ....|.|   +++.|+
T Consensus       147 v~~~p~~~~l~s~s~-D~~v~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~s~---~g~~l~  217 (371)
T d1k8kc_         147 LDWHPNSVLLAAGSC-DFKCRIF--SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV---HGVCFSA---NGSRVA  217 (371)
T ss_dssp             EEECTTSSEEEEEET-TSCEEEE--ECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE---EEEEECS---SSSEEE
T ss_pred             ccccccccceecccc-CcEEEEE--eeccCccccccccccccccccceeeeeeccCccCcE---EEEEeec---cccccc
Confidence            899999995555444 4544444  3322221100   00  000        00111111   1245554   666654


Q ss_pred             EEEEeCCeEEEEEEECCCCce-EeecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          373 CSYRQNGRSYLGILDDFGHSL-SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       373 ~~~~~~g~~~L~~~dl~~g~~-~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                       +...++.  |.+.|+..++. ..+......+..+  ++++ .+++.++  .....++.++...+.
T Consensus       218 -s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~-~~la~g~--d~~~~~~~~~~~~~~  277 (371)
T d1k8kc_         218 -WVSHDST--VCLADADKKMAVATLASETLPLLAVTFITES-SLVAAGH--DCFPVLFTYDSAAGK  277 (371)
T ss_dssp             -EEETTTE--EEEEEGGGTTEEEEEECSSCCEEEEEEEETT-EEEEEET--TSSCEEEEEETTTTE
T ss_pred             -ccccCCc--ceEEeeecccceeeeecccccceeeeecCCC-CEEEEEc--CCceEEEEeeCCCce
Confidence             4444554  66667776653 3333333334444  5555 4444333  344567777755443

>d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase
domain: Heroin esterase
species: Rhodococcus sp. [TaxId: 1831]

Probab=98.28  E-value=4.3e-07  Score=88.04  Aligned_cols=73  Identities=18%  Similarity=0.198  Sum_probs=53.2

Q ss_pred             CCeEEEeeccCCCe-EEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccc-cCccChHHHHHH-hcCcEEEEeCCCCCC
Q 008927          460 LPELIEFPTEVPGQ-KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILNLSIQYWT-SRGWAFVDVNYGGST  536 (548)
Q Consensus       460 ~pe~i~~~s~~dG~-~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~-~~~~~~~~Q~~a-srGyaVl~~NyRGSt  536 (548)
                      ..+.+++++. ||. +|..++|.|++.      .++.|+||++|||-...- ........+.++ +.||+|+.+|||.+.
T Consensus        49 ~~~~~~~~~~-~g~~~i~~~~~~P~~~------~~~~Pvvv~iHGGG~~~g~~~~~~~~~~~la~~~G~~V~~vdYrl~p  121 (317)
T d1lzla_          49 SLRELSAPGL-DGDPEVKIRFVTPDNT------AGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAP  121 (317)
T ss_dssp             EEEEEEECCS-TTCCCEEEEEEEESSC------CSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTT
T ss_pred             eEEEEEEecC-CCCceEEEEEECCCCC------CCCCcEEEEecCcccccccccccchHHHhHHhhcCCccccccccccc
Confidence            3477899997 885 699999999752      346899999999954322 222334445555 469999999999987


Q ss_pred             CCC
Q 008927          537 GLS  539 (548)
Q Consensus       537 GyG  539 (548)
                      .+.
T Consensus       122 e~~  124 (317)
T d1lzla_         122 ETT  124 (317)
T ss_dssp             TSC
T ss_pred             ccc
Confidence            643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.26  E-value=2.3e-05  Score=75.54  Aligned_cols=133  Identities=9%  Similarity=-0.047  Sum_probs=74.9

Q ss_pred             eeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCC--CCce
Q 008927          197 IFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--DKAE  274 (548)
Q Consensus       197 ~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~--~~~~  274 (548)
                      ..+|||+++++....+.    .....+|++|+++++.  ...+..+  ....++|||||++|+..........+  ....
T Consensus         8 a~spdg~~~~v~~~~~~----~~~~~v~v~D~~tg~~--~~~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~   79 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHF----AAVTQQFVIDGEAGRV--IGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDY   79 (355)
T ss_dssp             CCCCCTTEEEEEECGGG----CSSEEEEEEETTTTEE--EEEEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred             eeCCCCCEEEEEecccC----CCcCeEEEEECCCCcE--EEEEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCE
Confidence            35899999855422221    1346899999999872  2333333  23367999999998765422111100  1246


Q ss_pred             EEEEEecCCCceeeeEEEcCCCC-CcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEe
Q 008927          275 LWVGYISENGDVYKRVCVAGFDP-TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA  339 (548)
Q Consensus       275 L~v~~~~~~g~~~~~~~l~~~~~-~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~  339 (548)
                      |.+.|+.. ++......+..... ..........|+|||+.+++.+. .....++.++..+++...
T Consensus        80 v~v~D~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~-~~~~~~~~~~~~~~~~~~  143 (355)
T d2bbkh_          80 VEVFDPVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF-SPAPAVGVVDLEGKAFKR  143 (355)
T ss_dssp             EEEECTTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC-SSSCEEEEEETTTTEEEE
T ss_pred             EEEEECCC-CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecC-CCCceeeeeecCCCcEee
Confidence            88889874 54322222222110 00012345689999994444444 333467778888877544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=0.00017  Score=67.36  Aligned_cols=197  Identities=12%  Similarity=0.086  Sum_probs=121.1

Q ss_pred             ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCC
Q 008927          153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (548)
Q Consensus       153 ~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~  232 (548)
                      ..++|||++...+.|+++++++  +..+.+....   -.....++++.-++.|++. +..       ...|.++++++..
T Consensus        46 ~~~~iywsd~~~~~I~~~~l~g--~~~~~v~~~~---~~~p~~iAvD~~~~~lY~~-d~~-------~~~I~~~~~dg~~  112 (263)
T d1npea_          46 VDKVVYWTDISEPSIGRASLHG--GEPTTIIRQD---LGSPEGIALDHLGRTIFWT-DSQ-------LDRIEVAKMDGTQ  112 (263)
T ss_dssp             TTTEEEEEETTTTEEEEEESSS--CCCEEEECTT---CCCEEEEEEETTTTEEEEE-ETT-------TTEEEEEETTSCS
T ss_pred             CCCEEEEEECCCCeEEEEEccc--CCcEEEEEec---cccccEEEEeccCCeEEEe-ccC-------CCEEEEEecCCce
Confidence            3678999988888999999997  5555554321   1123455666667777665 322       2579999999877


Q ss_pred             ccCcEEeeec-CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcC
Q 008927          233 IQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK  311 (548)
Q Consensus       233 ~~~~~~L~~~-~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspD  311 (548)
                         .+.|... .......++.|...+|.|..+...     ...|+.+++++.+.   ..++...-    .....+...+.
T Consensus       113 ---~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~-----~~~I~r~~~dG~~~---~~i~~~~~----~~P~glaiD~~  177 (263)
T d1npea_         113 ---RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD-----NPKIETSHMDGTNR---RILAQDNL----GLPNGLTFDAF  177 (263)
T ss_dssp             ---CEEEECSSCSSEEEEEEETTTTEEEEEECCSS-----SCEEEEEETTSCCC---EEEECTTC----SCEEEEEEETT
T ss_pred             ---EEEEecccccCCcEEEEecccCcEEEeecCCC-----CcEEEEecCCCCCc---eeeeeecc----cccceEEEeec
Confidence               6655433 233456678998888988875431     34699999874321   22332221    22345667777


Q ss_pred             Cc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCC
Q 008927          312 GE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG  390 (548)
Q Consensus       312 G~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~  390 (548)
                      ++ ||+. |.  +...|.+++++++..+.+...   ...|.      ..+.     ++++||++-  .+...|+++|..+
T Consensus       178 ~~~lYw~-d~--~~~~I~~~~~~g~~~~~v~~~---~~~P~------~lav-----~~~~lYwtd--~~~~~I~~~~~~~  238 (263)
T d1npea_         178 SSQLCWV-DA--GTHRAECLNPAQPGRRKVLEG---LQYPF------AVTS-----YGKNLYYTD--WKTNSVIAMDLAI  238 (263)
T ss_dssp             TTEEEEE-ET--TTTEEEEEETTEEEEEEEEEC---CCSEE------EEEE-----ETTEEEEEE--TTTTEEEEEETTT
T ss_pred             CcEEEEE-eC--CCCEEEEEECCCCCeEEEECC---CCCcE------EEEE-----ECCEEEEEE--CCCCEEEEEECCC
Confidence            77 6555 44  234788899877666555431   11121      1233     567888764  2345689999888


Q ss_pred             CceEee
Q 008927          391 HSLSLL  396 (548)
Q Consensus       391 g~~~~l  396 (548)
                      |+...+
T Consensus       239 g~~~~~  244 (263)
T d1npea_         239 SKEMDT  244 (263)
T ss_dssp             TEEEEE
T ss_pred             CccceE
Confidence            865443

>d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase
domain: Uncharacterized protein TM1040 2492
species: Silicibacter sp. tm1040 [TaxId: 292414]

Probab=98.23  E-value=5.1e-07  Score=85.11  Aligned_cols=66  Identities=18%  Similarity=0.171  Sum_probs=49.1

Q ss_pred             EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccc-cccCccChHHHHHHhcCcEEEEeCCCCCCCCC
Q 008927          463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSRGWAFVDVNYGGSTGLS  539 (548)
Q Consensus       463 ~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~-~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG  539 (548)
                      -|.|-.. +.+.+.  ||.|++        ++.|+||++|||++. .+...+....++|+++||+|+.||||.+.+..
T Consensus        41 dv~Yg~~-~~~~lD--iy~P~~--------~~~P~vv~iHGG~w~~g~~~~~~~~a~~l~~~G~~Vv~~~YRl~p~~~  107 (261)
T d2pbla1          41 NLSYGEG-DRHKFD--LFLPEG--------TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVR  107 (261)
T ss_dssp             EEESSSS-TTCEEE--EECCSS--------SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSC
T ss_pred             CcCCCCC-cCeEEE--EeccCC--------CCCCeEEEECCCCCccCChhHhhhHHHHHhcCCceeeccccccccccc
Confidence            3555443 455555  677843        456999999999964 34455677889999999999999999988753

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.23  E-value=7.2e-05  Score=73.11  Aligned_cols=116  Identities=8%  Similarity=0.074  Sum_probs=72.7

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEe---eecCCceeeeEECCCCCEEEEEEecCCCCC
Q 008927          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL---VSGSDFYAFPRMDPRGERMAWIEWHHPNMP  269 (548)
Q Consensus       193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L---~~~~~~~~~p~~SPDGk~La~~~~~~~~~p  269 (548)
                      +...+|||||+.|++...+         ..|.++|+++++   ...+   ....+.+....|||||++|+-.+.      
T Consensus        10 It~~~~s~dg~~la~~~~~---------~~i~iw~~~~~~---~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~------   71 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICPNN---------HEVHIYEKSGNK---WVQVHELKEHNGQVTGVDWAPDSNRIVTCGT------   71 (371)
T ss_dssp             CCEEEECTTSSEEEEECSS---------SEEEEEEEETTE---EEEEEEEECCSSCEEEEEEETTTTEEEEEET------
T ss_pred             eEEEEECCCCCEEEEEeCC---------CEEEEEECCCCC---EEEEEEecCCCCCEEEEEECCCCCEEEEEEC------
Confidence            3456899999988765322         357778888775   3333   333445677889999998874431      


Q ss_pred             CCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccC
Q 008927          270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN  334 (548)
Q Consensus       270 ~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~  334 (548)
                        ...|++.++.. +.......+.+..    ..+....|+|||+.+++... ++.-.+|.++...
T Consensus        72 --D~~i~vWd~~~-~~~~~~~~~~~~~----~~v~~i~~~p~~~~l~~~s~-d~~i~i~~~~~~~  128 (371)
T d1k8kc_          72 --DRNAYVWTLKG-RTWKPTLVILRIN----RAARCVRWAPNEKKFAVGSG-SRVISICYFEQEN  128 (371)
T ss_dssp             --TSCEEEEEEET-TEEEEEEECCCCS----SCEEEEEECTTSSEEEEEET-TSSEEEEEEETTT
T ss_pred             --CCeEEEEeecc-ccccccccccccc----ccccccccccccccceeecc-cCcceeeeeeccc
Confidence              24577878873 4332222233322    45777899999995455444 5656677666433

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=0.00036  Score=64.98  Aligned_cols=235  Identities=11%  Similarity=0.027  Sum_probs=136.3

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCCCceecCCCC--CCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDY--GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~--~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~  233 (548)
                      .|+|++  .+.|.++++++  .....+-...  ..+......+.+++..++|++. +..       ...|++++++++. 
T Consensus         3 fLl~s~--~~~I~~~~ld~--~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iyws-d~~-------~~~I~~~~l~g~~-   69 (263)
T d1npea_           3 HLLFAQ--TGKIERLPLER--NTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWT-DIS-------EPSIGRASLHGGE-   69 (263)
T ss_dssp             EEEEEE--EEEEEEEEESS--SCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEE-ETT-------TTEEEEEESSSCC-
T ss_pred             EEEEeC--CCeEEEEECCC--ccccccccccccccCCCcEEEEEEEeCCCEEEEE-ECC-------CCeEEEEEcccCC-
Confidence            588987  56899999986  3222111100  0001123345677778887664 332       2579999999887 


Q ss_pred             cCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCC
Q 008927          234 QEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (548)
Q Consensus       234 ~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG  312 (548)
                        .+.+.. +-......++..-++.|+|...       ....|.++++++..   ...++....    .....+...|..
T Consensus        70 --~~~v~~~~~~~p~~iAvD~~~~~lY~~d~-------~~~~I~~~~~dg~~---~~~l~~~~l----~~p~~l~vdp~~  133 (263)
T d1npea_          70 --PTTIIRQDLGSPEGIALDHLGRTIFWTDS-------QLDRIEVAKMDGTQ---RRVLFDTGL----VNPRGIVTDPVR  133 (263)
T ss_dssp             --CEEEECTTCCCEEEEEEETTTTEEEEEET-------TTTEEEEEETTSCS---CEEEECSSC----SSEEEEEEETTT
T ss_pred             --cEEEEEeccccccEEEEeccCCeEEEecc-------CCCEEEEEecCCce---EEEEecccc----cCCcEEEEeccc
Confidence              565543 3223334456656788887652       24579999987322   122333321    234456677765


Q ss_pred             cEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCc
Q 008927          313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS  392 (548)
Q Consensus       313 ~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~  392 (548)
                      .++|.++.+.+...|++.++++...+.+...  ....|.      .+++.+   .+++||++-  .+...|.+++++++.
T Consensus       134 g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~--~~~~P~------glaiD~---~~~~lYw~d--~~~~~I~~~~~~g~~  200 (263)
T d1npea_         134 GNLYWTDWNRDNPKIETSHMDGTNRRILAQD--NLGLPN------GLTFDA---FSSQLCWVD--AGTHRAECLNPAQPG  200 (263)
T ss_dssp             TEEEEEECCSSSCEEEEEETTSCCCEEEECT--TCSCEE------EEEEET---TTTEEEEEE--TTTTEEEEEETTEEE
T ss_pred             CcEEEeecCCCCcEEEEecCCCCCceeeeee--cccccc------eEEEee---cCcEEEEEe--CCCCEEEEEECCCCC
Confidence            5444454434455799999977665555422  122221      233432   577888763  455678899987766


Q ss_pred             eEeecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          393 LSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       393 ~~~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      .+.+..+...-.+++.++++||++-.   ....|+++|..+++
T Consensus       201 ~~~v~~~~~~P~~lav~~~~lYwtd~---~~~~I~~~~~~~g~  240 (263)
T d1npea_         201 RRKVLEGLQYPFAVTSYGKNLYYTDW---KTNSVIAMDLAISK  240 (263)
T ss_dssp             EEEEEECCCSEEEEEEETTEEEEEET---TTTEEEEEETTTTE
T ss_pred             eEEEECCCCCcEEEEEECCEEEEEEC---CCCEEEEEECCCCc
Confidence            66554332222345667888776543   34689999987775

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=0.00059  Score=63.53  Aligned_cols=233  Identities=10%  Similarity=0.014  Sum_probs=134.0

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc-c
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-Q  234 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~-~  234 (548)
                      .|+|++  ...|.++++++  .+...|.+..    .....+.+++..++|++. +..       ...|++.++++... .
T Consensus         3 fLl~s~--~~~I~~~~l~~--~~~~~~~~~~----~~~~~id~d~~~~~lYw~-D~~-------~~~I~~~~l~~~~~~~   66 (266)
T d1ijqa1           3 YLFFTN--RHEVRKMTLDR--SEYTSLIPNL----RNVVALDTEVASNRIYWS-DLS-------QRMICSTQLDRAHGVS   66 (266)
T ss_dssp             EEEEEC--BSSEEEEETTS--CCCEEEECSC----SSEEEEEEETTTTEEEEE-ETT-------TTEEEEEEC-------
T ss_pred             EEEEEC--CCeEEEEECCC--CcceeeeCCC----CceEEEEEEeCCCEEEEE-ECC-------CCEEEEEEecCCCCCc
Confidence            478887  44699999997  6666665432    123456688888888775 322       24788888875321 0


Q ss_pred             CcEEe-eecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc
Q 008927          235 EPKVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (548)
Q Consensus       235 ~~~~L-~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~  313 (548)
                      ..+.+ ..+.......++.+-++.|+|...       ....|.++++++ ..  ....+....    .....+...|...
T Consensus        67 ~~~~~~~~~~~~p~glAvD~~~~~lY~~d~-------~~~~I~v~~~~g-~~--~~~~~~~~~----~~P~~l~vd~~~g  132 (266)
T d1ijqa1          67 SYDTVISRDIQAPDGLAVDWIHSNIYWTDS-------VLGTVSVADTKG-VK--RKTLFRENG----SKPRAIVVDPVHG  132 (266)
T ss_dssp             -CEEEECSSCSCCCEEEEETTTTEEEEEET-------TTTEEEEEETTS-SS--EEEEEECTT----CCEEEEEEETTTT
T ss_pred             ceEEEEeCCCCCcceEEEeeccceEEEEec-------CCCEEEeEecCC-ce--EEEEEcCCC----CCcceEEEEcccC
Confidence            02333 333222334567777888887642       245799999873 22  123333322    2334456666544


Q ss_pred             EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce
Q 008927          314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (548)
Q Consensus       314 L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~  393 (548)
                      ++|.++. .....|++.++++...+.+...  ....|      ..++..+   .+++||++-  .+...|..+++++...
T Consensus       133 ~ly~~~~-~~~~~I~r~~~dGs~~~~l~~~--~~~~p------~gl~iD~---~~~~lYw~d--~~~~~I~~~~~dG~~~  198 (266)
T d1ijqa1         133 FMYWTDW-GTPAKIKKGGLNGVDIYSLVTE--NIQWP------NGITLDL---LSGRLYWVD--SKLHSISSIDVNGGNR  198 (266)
T ss_dssp             EEEEEEC-SSSCEEEEEETTSCCEEEEECS--SCSCE------EEEEEET---TTTEEEEEE--TTTTEEEEEETTSCSC
T ss_pred             eEEEecc-CCCcceeEeccCCCceeccccc--cccee------eEEEeec---cccEEEEec--CCcCEEEEEECCCCCE
Confidence            4444454 3335799999977766666532  11112      1233432   578898763  4456789999987665


Q ss_pred             EeecCC---CceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          394 SLLDIP---FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       394 ~~l~~~---~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      +.+...   ...-.+++.+++.||+.-.   ....|++++..+++
T Consensus       199 ~~~~~~~~~~~~p~~lav~~~~ly~td~---~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         199 KTILEDEKRLAHPFSLAVFEDKVFWTDI---INEAIFSANRLTGS  240 (266)
T ss_dssp             EEEEECTTTTSSEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred             EEEEeCCCcccccEEEEEECCEEEEEEC---CCCeEEEEECCCCc
Confidence            554322   1222345677888877532   34689999877665

>d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: PepX catalytic domain-like
domain: Alpha-amino acid ester hydrolase
species: Acetobacter pasteurianus [TaxId: 438]

Probab=98.21  E-value=6.8e-07  Score=89.28  Aligned_cols=74  Identities=20%  Similarity=0.292  Sum_probs=55.2

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEcc--C-------cccc-ccCccChHHHHHHhcCcEEEEe
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG--G-------PTSE-ARGILNLSIQYWTSRGWAFVDV  530 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHG--G-------P~~~-~~~~~~~~~Q~~asrGyaVl~~  530 (548)
                      -+.|.++.+ ||.+|.+-||.|++       ++++|+||..|+  .       |... ....+....++||++||+|+.+
T Consensus        28 ~~~v~ipmr-DG~~L~~~v~~P~~-------~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~   99 (385)
T d2b9va2          28 KREVMVPMR-DGVKLYTVIVIPKN-------ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQ   99 (385)
T ss_dssp             EEEEEEECT-TSCEEEEEEEEETT-------CCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEE
T ss_pred             EeEEEEECC-CCCEEEEEEEEcCC-------CCceeEEEEEccCCCCCccccCCcccccccccchHHHHHHhCCcEEEEE
Confidence            346889998 99999999999964       468999998752  1       1111 1112345678999999999999


Q ss_pred             CCCCCCCCChhh
Q 008927          531 NYGGSTGLSSVP  542 (548)
Q Consensus       531 NyRGStGyG~~f  542 (548)
                      |+||+.+.|-+|
T Consensus       100 d~RG~g~S~G~~  111 (385)
T d2b9va2         100 DIRGKYGSQGDY  111 (385)
T ss_dssp             ECTTSTTCCSCC
T ss_pred             cCCcccCCCCce
Confidence            999977766544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.20  E-value=0.00022  Score=68.22  Aligned_cols=244  Identities=8%  Similarity=-0.012  Sum_probs=124.6

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCC-CceecCCCCCCCCceecceeeCC--CCCEEEEEEeccCCCCCCceeEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDS-SPLPITPDYGEPLVSYADGIFDP--RFNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~-~~~~lT~~~~~~~~~~~~~~~Sp--DG~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      +|.++++.|+|.......|+.++...... ....++...   ........|+|  +|+.|+....+         ..|.+
T Consensus        24 ~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~---~~~v~~v~fsP~~~g~~lasgs~D---------g~i~i   91 (325)
T d1pgua1          24 SYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHG---SSVVTTVKFSPIKGSQYLCSGDES---------GKVIV   91 (325)
T ss_dssp             EEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTT---TSCEEEEEECSSTTCCEEEEEETT---------SEEEE
T ss_pred             EECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCC---CCCEEEEEEeeCCCCCEEEEEeCC---------CCEEE
Confidence            57778889999874433344444322101 112333221   12355678998  45555443222         24555


Q ss_pred             EECCCCCccCcEEe--------eecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCC
Q 008927          226 IALNGQNIQEPKVL--------VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP  297 (548)
Q Consensus       226 idl~~g~~~~~~~L--------~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~  297 (548)
                      +|+..++.  ...+        ......+....|+|||++|+......      ...+.+.+++. ++  ....+.+.. 
T Consensus        92 Wd~~~~~~--~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~------~~~~~~~~~~~-~~--~~~~~~~h~-  159 (325)
T d1pgua1          92 WGWTFDKE--SNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR------DNFGVFISWDS-GN--SLGEVSGHS-  159 (325)
T ss_dssp             EEEEEEGG--GTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS------SCSEEEEETTT-CC--EEEECCSCS-
T ss_pred             eeecCCcc--eeeeecccccccccccCcEEEEEECCCCCccceeeccc------cceEEEEeecc-cc--cceeeeecc-
Confidence            55544321  1111        11122355678999999998766332      23466667763 43  233344332 


Q ss_pred             CcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEE
Q 008927          298 TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR  376 (548)
Q Consensus       298 ~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~  376 (548)
                         ..+....|+|++. +++.... ++.  +..++...++...-.....  ....++   ....|.|   +++.++++..
T Consensus       160 ---~~v~~~~~~~~~~~~~~~~~~-d~~--v~~~d~~~~~~~~~~~~~~--~~~~~v---~~v~~~p---d~~~~l~s~~  225 (325)
T d1pgua1         160 ---QRINACHLKQSRPMRSMTVGD-DGS--VVFYQGPPFKFSASDRTHH--KQGSFV---RDVEFSP---DSGEFVITVG  225 (325)
T ss_dssp             ---SCEEEEEECSSSSCEEEEEET-TTE--EEEEETTTBEEEEEECSSS--CTTCCE---EEEEECS---TTCCEEEEEE
T ss_pred             ---cccccccccccccceEEEeec-ccc--cccccccccccceeccccc--CCCCcc---EEeeecc---ccceeccccc
Confidence               4567789999998 5555444 453  4455665555432211111  111111   1244554   5556666666


Q ss_pred             eCCeEEEEEEECCCCceE-eecCCCce----eEee-eecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927          377 QNGRSYLGILDDFGHSLS-LLDIPFTD----IDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       377 ~~g~~~L~~~dl~~g~~~-~l~~~~~~----~~~~-s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                      .++.  |.++|+.+++.. .+......    +... .++++.|+ .++.   -..|.++|+++++.
T Consensus       226 ~d~~--i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~-s~s~---D~~i~iwd~~~~~~  285 (325)
T d1pgua1         226 SDRK--ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA-TVGA---DATIRVWDVTTSKC  285 (325)
T ss_dssp             TTCC--EEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEE-EEET---TSEEEEEETTTTEE
T ss_pred             cccc--eeeeeeccccccccccccccccccceeeeeccCCCEEE-EEeC---CCeEEEEECCCCCE
Confidence            6665  556688887643 44432221    1222 25666554 3332   25688889887763

>d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: A novel bacterial esterase
domain: A novel bacterial esterase
species: Alcaligenes sp. [TaxId: 512]

Probab=98.17  E-value=7.5e-07  Score=85.24  Aligned_cols=61  Identities=16%  Similarity=0.173  Sum_probs=46.6

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccC-----ccChHHHHHHhcCcEEEEeCCCCCCCCChhhh
Q 008927          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-----ILNLSIQYWTSRGWAFVDVNYGGSTGLSSVPS  543 (548)
Q Consensus       475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~-----~~~~~~Q~~asrGyaVl~~NyRGStGyG~~f~  543 (548)
                      ++..++.|.+       .+++|+ |++||||.+...+     ++...+|+|+++||.|+.+|+||+...|+.+.
T Consensus        46 ~~v~~~~p~~-------~~~~Pv-vllHG~~~~~~~w~~~~~~~~~~~~~~~~~Gy~V~~~D~~G~G~S~~~~~  111 (318)
T d1qlwa_          46 MYVRYQIPQR-------AKRYPI-TLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDIS  111 (318)
T ss_dssp             EEEEEEEETT-------CCSSCE-EEECCTTCCGGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCH
T ss_pred             EEEEEECCCC-------CCCCcE-EEECCCCCCcCccccCcccchhHHHHHHhCCCEEEEecCCCCCCCCCccc
Confidence            4445666743       456784 6699999987654     34467899999999999999999998887654

>d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: 2,6-dihydropseudooxynicotine hydrolase-like
domain: 2,6-dihydropseudooxynicotine hydrolase
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.15  E-value=1.7e-06  Score=85.58  Aligned_cols=66  Identities=17%  Similarity=0.085  Sum_probs=52.6

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      ..|.|+++-  ||.+|+|+|+.|.+       .++.|+||++||.....  ..+....+.|+++||+|+.+|+||..
T Consensus       105 ~~e~v~ip~--dg~~l~g~l~~P~~-------~~~~P~Vi~~hG~~~~~--e~~~~~~~~l~~~G~~vl~~D~~G~G  170 (360)
T d2jbwa1         105 PAERHELVV--DGIPMPVYVRIPEG-------PGPHPAVIMLGGLESTK--EESFQMENLVLDRGMATATFDGPGQG  170 (360)
T ss_dssp             CEEEEEEEE--TTEEEEEEEECCSS-------SCCEEEEEEECCSSCCT--TTTHHHHHHHHHTTCEEEEECCTTSG
T ss_pred             CeEEeecCc--CCcccceEEEecCC-------CCCceEEEEeCCCCccH--HHHHHHHHHHHhcCCEEEEEcccccc
Confidence            357888886  79999999999964       35689999999975432  23445678999999999999999853

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.12  E-value=8.5e-05  Score=70.73  Aligned_cols=205  Identities=12%  Similarity=0.028  Sum_probs=112.7

Q ss_pred             cCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEEEE
Q 008927           91 LGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH  170 (548)
Q Consensus        91 ~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~~  170 (548)
                      +..+.++|.++||+...     ....|++++.+  ++.+.+.....    .   -.+.++.++|+ |+.....++.|+++
T Consensus        30 ~e~iAv~pdG~l~vt~~-----~~~~I~~i~p~--g~~~~~~~~~~----~---~~gla~~~dG~-l~v~~~~~~~~~~~   94 (302)
T d2p4oa1          30 LENLASAPDGTIFVTNH-----EVGEIVSITPD--GNQQIHATVEG----K---VSGLAFTSNGD-LVATGWNADSIPVV   94 (302)
T ss_dssp             EEEEEECTTSCEEEEET-----TTTEEEEECTT--CCEEEEEECSS----E---EEEEEECTTSC-EEEEEECTTSCEEE
T ss_pred             cCCEEECCCCCEEEEeC-----CCCEEEEEeCC--CCEEEEEcCCC----C---cceEEEcCCCC-eEEEecCCceEEEE
Confidence            44678898556776653     23468888776  34443332111    1   11224444544 66666566677777


Q ss_pred             eCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeec--------
Q 008927          171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG--------  242 (548)
Q Consensus       171 ~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~--------  242 (548)
                      ++.+..+..+.+.....  .....+..+++||+.  |+....       ...+|.+|..++.   .......        
T Consensus        95 ~~~~~~~~~~~~~~~~~--~~~~n~i~~~~~g~~--~v~~~~-------~~~i~~~~~~~~~---~~~~~~~~~~~~~~~  160 (302)
T d2p4oa1          95 SLVKSDGTVETLLTLPD--AIFLNGITPLSDTQY--LTADSY-------RGAIWLIDVVQPS---GSIWLEHPMLARSNS  160 (302)
T ss_dssp             EEECTTSCEEEEEECTT--CSCEEEEEESSSSEE--EEEETT-------TTEEEEEETTTTE---EEEEEECGGGSCSST
T ss_pred             EecccccceeeccccCC--ccccceeEEccCCCE--Eeeccc-------cccceeeeccCCc---ceeEecCCccceeec
Confidence            76542244444433211  123456778999853  332332       2478999998875   3333221        


Q ss_pred             -CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCC
Q 008927          243 -SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK  321 (548)
Q Consensus       243 -~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~  321 (548)
                       ......-.+++|+..|.+...       ....|+.++.+..+...........     .......+++||.||+.... 
T Consensus       161 ~~~~~~~ngi~~~~~~l~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~-----~~pdgia~d~dG~l~va~~~-  227 (302)
T d2p4oa1         161 ESVFPAANGLKRFGNFLYVSNT-------EKMLLLRIPVDSTDKPGEPEIFVEQ-----TNIDDFAFDVEGNLYGATHI-  227 (302)
T ss_dssp             TCCSCSEEEEEEETTEEEEEET-------TTTEEEEEEBCTTSCBCCCEEEEES-----CCCSSEEEBTTCCEEEECBT-
T ss_pred             cCcccccccccccCCceeeecC-------CCCeEEeccccccccccccccccCC-----CCCcceEECCCCCEEEEEcC-
Confidence             111111234557777766542       2468999998765543333333322     23456899999997766543 


Q ss_pred             CCeeeEEEEeccCCeeEee
Q 008927          322 NGFWNLHKWIESNNEVLAI  340 (548)
Q Consensus       322 ~g~~~Ly~~d~~~g~~~~l  340 (548)
                      .  ..|+++++++ +...+
T Consensus       228 ~--~~V~~i~p~G-~~~~~  243 (302)
T d2p4oa1         228 Y--NSVVRIAPDR-STTII  243 (302)
T ss_dssp             T--CCEEEECTTC-CEEEE
T ss_pred             C--CcEEEECCCC-CEEEE
Confidence            3  3588998854 44433

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.10  E-value=0.0002  Score=71.40  Aligned_cols=124  Identities=11%  Similarity=-0.028  Sum_probs=73.7

Q ss_pred             ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCce
Q 008927          195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE  274 (548)
Q Consensus       195 ~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~  274 (548)
                      .+.++.|.+.+++|....       .+.|.++|+.+++.  ...|..+ ......+|||||++|+ +...       ...
T Consensus        23 ~~~~~~d~~~~~~V~~~~-------dg~v~vwD~~t~~~--~~~l~~g-~~~~~vafSPDGk~l~-~~~~-------d~~   84 (426)
T d1hzua2          23 KQLNDLDLPNLFSVTLRD-------AGQIALVDGDSKKI--VKVIDTG-YAVHISRMSASGRYLL-VIGR-------DAR   84 (426)
T ss_dssp             SCCSCCCGGGEEEEEETT-------TTEEEEEETTTCSE--EEEEECC-SSEEEEEECTTSCEEE-EEET-------TSE
T ss_pred             cccccCCCCeEEEEEEcC-------CCEEEEEECCCCcE--EEEEeCC-CCeeEEEECCCCCEEE-EEeC-------CCC
Confidence            345667777777775543       25799999999972  3444433 3456679999999886 4421       246


Q ss_pred             EEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeec
Q 008927          275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (548)
Q Consensus       275 L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~  341 (548)
                      +.+.|+++ ++......+.... ........+.|+|||+ ++..... .+  .+..+|.++++...+.
T Consensus        85 v~vwd~~t-~~~~~~~~i~~~~-~~~~~~~s~~~spDG~~l~v~~~~-~~--~v~i~d~~~~~~~~~~  147 (426)
T d1hzua2          85 IDMIDLWA-KEPTKVAEIKIGI-EARSVESSKFKGYEDRYTIAGAYW-PP--QFAIMDGETLEPKQIV  147 (426)
T ss_dssp             EEEEETTS-SSCEEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEE-SS--EEEEEETTTCCEEEEE
T ss_pred             EEEEEccC-CceeEEEEEeCCC-CCcceEEeeeecCCCCEEEEeecC-CC--eEEEEcCCccceeEEe
Confidence            88899884 4321122222111 0002345788999999 5544322 32  4666787777765443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.09  E-value=0.0023  Score=58.73  Aligned_cols=157  Identities=10%  Similarity=0.032  Sum_probs=85.5

Q ss_pred             CCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCe
Q 008927           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR  166 (548)
Q Consensus        88 ~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~  166 (548)
                      ...+..++++| ++.++- ..   ++|.-.||.....  ...+.+......+.       .-.|++++..++... .+..
T Consensus        17 ~~~I~~l~~sp~~~~l~s-~s---~Dg~i~iWd~~~~--~~~~~~~~h~~~V~-------~~~~~~~~~~~~~~~-~~~~   82 (317)
T d1vyhc1          17 RSPVTRVIFHPVFSVMVS-AS---EDATIKVWDYETG--DFERTLKGHTDSVQ-------DISFDHSGKLLASCS-ADMT   82 (317)
T ss_dssp             SSCEEEEEECSSSSEEEE-EE---SSSCEEEEETTTC--CCCEEECCCSSCEE-------EEEECTTSSEEEEEE-TTSC
T ss_pred             CCCeEEEEEcCCCCEEEE-Ee---CCCeEEEEECCCC--CEEEEEeCCCCcEE-------EEeeecccccccccc-cccc
Confidence            35677889999 665433 22   3588888876443  22333332211111       113444555555544 3334


Q ss_pred             EEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCce
Q 008927          167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY  246 (548)
Q Consensus       167 Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~  246 (548)
                      +...+...  .+.......   .........++|+++.++....+         ..+..+|+.+++.  ...+.......
T Consensus        83 ~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d---------~~~~~~~~~~~~~--~~~~~~~~~~~  146 (317)
T d1vyhc1          83 IKLWDFQG--FECIRTMHG---HDHNVSSVSIMPNGDHIVSASRD---------KTIKMWEVQTGYC--VKTFTGHREWV  146 (317)
T ss_dssp             CCEEETTS--SCEEECCCC---CSSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTCCE--EEEEECCSSCE
T ss_pred             cccccccc--ccccccccc---ccccceeeeccCCCceEEeeccC---------cceeEeeccccee--eeEEccCCCcc
Confidence            44444443  222222221   12234556799999988765433         3577789988861  23344334455


Q ss_pred             eeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC
Q 008927          247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE  282 (548)
Q Consensus       247 ~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~  282 (548)
                      ....|+|||+.|+-...        ...+.+.++..
T Consensus       147 ~~~~~~~~~~~l~~~~~--------d~~v~~~~~~~  174 (317)
T d1vyhc1         147 RMVRPNQDGTLIASCSN--------DQTVRVWVVAT  174 (317)
T ss_dssp             EEEEECTTSSEEEEEET--------TSCEEEEETTT
T ss_pred             eeeecccCCCEEEEEeC--------CCeEEEEeecc
Confidence            66789999998875442        23466777653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.05  E-value=0.00047  Score=65.94  Aligned_cols=266  Identities=9%  Similarity=0.004  Sum_probs=132.0

Q ss_pred             CccCceEEcCCCcEEEEEecCCCCC--ceEEEEcCCCCCCCCcccCCCCCCcccccee-eCCeeeEEECCEEEEEeCCCC
Q 008927           89 KRLGGTAVDGHGRLIWLESRPTEAG--RGVLVKEPAKAGDEPSDITPKEYAVRTTAQE-YGGGAFRIFGDTVIFSNYKDQ  165 (548)
Q Consensus        89 ~~~~~~~~spg~~i~~~~~~~~e~g--r~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~-ygg~~~~~~~~~i~F~~~~~~  165 (548)
                      .....|.++|.+++|+++....-.+  ...|++++..+  ...........  ..... -.|-.+.++++.|+. .+...
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~--~~~~~~~~~~~--~~~~g~P~Gl~~~~dg~~l~v-ad~~~   92 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT--GKKTVICKPEV--NGYGGIPAGCQCDRDANQLFV-ADMRL   92 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT--CCEEEEECCEE--TTEECCEEEEEECSSSSEEEE-EETTT
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCC--CcEEEEECCcc--ccCCCcceeEEEeCCCCEEEE-EECCC
Confidence            4556788998557888763311000  12477777653  22222211000  00000 001233334555544 44456


Q ss_pred             eEEEEeCCCCCCCceecCCCCCCCCce-ecceeeCCCCCEEEEEEeccC--------CCCCCceeEEEEEECCCCCccCc
Q 008927          166 RLYKHSIDSKDSSPLPITPDYGEPLVS-YADGIFDPRFNRYVTVREDRR--------QDALNSTTEIVAIALNGQNIQEP  236 (548)
Q Consensus       166 ~Ly~~~~~~~~~~~~~lT~~~~~~~~~-~~~~~~SpDG~~i~~v~~~~~--------~~~~~~~~~l~~idl~~g~~~~~  236 (548)
                      .|++++.++  +..+.+....+....+ ..+..++|||. |++. ....        .........||+++.++.    .
T Consensus        93 ~i~~~~~~g--~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvt-d~~~~~~~~~~~~~~~~~~G~v~~~~~dg~----~  164 (314)
T d1pjxa_          93 GLLVVQTDG--TFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWIT-APAGEVAPADYTRSMQEKFGSIYCFTTDGQ----M  164 (314)
T ss_dssp             EEEEEETTS--CEEECCSBCTTSCBCBCCCEEEECTTSC-EEEE-ECBCBCTTSCCCBTTSSSCEEEEEECTTSC----E
T ss_pred             eEEEEeCCC--cEEEEEeccccccccCCCcEEEECCCCC-EEEe-cCccCcccccccceeccCCceEEEEeecCc----e
Confidence            799999986  4333332221111122 35678999996 4443 2110        011123568999998764    3


Q ss_pred             EEeeecCCceeeeEECCCCC---EEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc
Q 008927          237 KVLVSGSDFYAFPRMDPRGE---RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (548)
Q Consensus       237 ~~L~~~~~~~~~p~~SPDGk---~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~  313 (548)
                      ..+..+-.+-....|+||++   ..+|++..      ...+||.++++.+|.+...+.+...............+..||+
T Consensus       165 ~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~------~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn  238 (314)
T d1pjxa_         165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAET------PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN  238 (314)
T ss_dssp             EEEEEEESSEEEEEEEECTTSCEEEEEEEET------TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred             eEeeCCcceeeeeEECCCCCcceeEEEEEee------cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc
Confidence            44443322223457888765   23345522      2568999998766665444433221100001122356788888


Q ss_pred             EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECC
Q 008927          314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF  389 (548)
Q Consensus       314 L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~  389 (548)
                      ||+.... .  ..|+++++++++.........  .   +   ....+|.+   |++.||++..  ....|+++++.
T Consensus       239 lyVa~~~-~--g~I~~~dp~~g~~~~~i~~p~--~---~---~t~~afg~---d~~~lyVt~~--~~g~i~~~~~~  298 (314)
T d1pjxa_         239 LLVANWG-S--SHIEVFGPDGGQPKMRIRCPF--E---K---PSNLHFKP---QTKTIFVTEH--ENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEET-T--TEEEEECTTCBSCSEEEECSS--S---C---EEEEEECT---TSSEEEEEET--TTTEEEEEECS
T ss_pred             EEEEEcC-C--CEEEEEeCCCCEEEEEEECCC--C---C---EEEEEEeC---CCCEEEEEEC--CCCcEEEEECC
Confidence            7655432 2  479999988776533221100  0   1   11244543   5667776543  33467777753

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.05  E-value=0.00054  Score=59.90  Aligned_cols=201  Identities=14%  Similarity=0.132  Sum_probs=119.3

Q ss_pred             ECCEEEEEeCCCC--eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCC
Q 008927          153 FGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG  230 (548)
Q Consensus       153 ~~~~i~F~~~~~~--~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~  230 (548)
                      +++.|+|.....+  ++|.+  +|  ++...||..+   -....+|.  +.=.+|.|++.-...   ...+.||.+|+..
T Consensus        24 ~~d~ll~~~~seG~vni~~l--~g--~~~vkLtkeP---I~~~~~Pk--~~ldfi~f~RDV~kG---kE~Hai~~~Nlk~   91 (313)
T d2hu7a1          24 DGDKLLVVGFSEGSVNAYLY--DG--GETVKLNREP---INSVLDPH--YGVGRVILVRDVSKG---AEQHALFKVNTSR   91 (313)
T ss_dssp             TTTEEEEEEEETTEEEEEEE--SS--SSCEECCSSC---CSEECEEC--TTBSEEEEEEECSTT---SCCEEEEEEETTS
T ss_pred             cCCcEEEEEeccceEEEEEE--eC--CEEEEEeccc---ccCcCCCc--cCcceEEEEeehhcC---cceeeEEEEccCC
Confidence            4565666654445  55554  55  7889998763   11122222  233578888654332   2468899999983


Q ss_pred             -CCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927          231 -QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (548)
Q Consensus       231 -g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws  309 (548)
                       |+   ..+|..... ..-...--|++.++|+....     +.+.||+++   +|++.+...+.+           +.|-
T Consensus        92 ~GE---E~~i~spk~-vRI~S~~yddk~vvF~Gase-----d~~~LYvie---gGklrkL~~vPp-----------FsFV  148 (313)
T d2hu7a1          92 PGE---EQRLEAVKP-MRILSGVDTGEAVVFTGATE-----DRVALYALD---GGGLRELARLPG-----------FGFV  148 (313)
T ss_dssp             TTC---EEECTTSCS-BEEEEEEECSSCEEEEEECS-----SCEEEEEEE---TTEEEEEEEESS-----------CEEE
T ss_pred             CCe---eeEecCCce-EEEEEeeecCceEEEecccC-----CceEEEEEe---CCceeeeccCCC-----------cceE
Confidence             44   445543321 11123344899999998543     356788776   576543333332           2232


Q ss_pred             cC--Cc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927          310 SK--GE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (548)
Q Consensus       310 pD--G~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~  386 (548)
                      -|  |+ |.=+.=-+.+...+|..|+.+|..+-+++.+..+..+..         +    .++++..-++.-|...+..+
T Consensus       149 tDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tpkeGS~~~ay~---------~----~gnKV~sdyEt~gEsywit~  215 (313)
T d2hu7a1         149 SDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASI---------S----PGMKVTAGLETAREARLVTV  215 (313)
T ss_dssp             EEEETTEEEEEEEEETTEEEEEEEETTTEEEEEECCSSEEEEEEEE---------C----TTSCEEEEEEESSCEEEEEE
T ss_pred             EeccCCeEEEEeeecCCcceEEEEecccCCEEEecCCCCcccceeE---------c----cCceeeeccCCCCceEEEEE
Confidence            33  55 332322224556688999988999988876554433221         2    46667555666677777788


Q ss_pred             ECCCCceEeecCCCc
Q 008927          387 DDFGHSLSLLDIPFT  401 (548)
Q Consensus       387 dl~~g~~~~l~~~~~  401 (548)
                      |+++++.+.+..|.-
T Consensus       216 D~~s~~yerve~P~k  230 (313)
T d2hu7a1         216 DPRDGSVEDLELPSK  230 (313)
T ss_dssp             CTTTCCEEECCCSSC
T ss_pred             ecccCceeeeecCcc
Confidence            999999999987643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=0.00058  Score=63.62  Aligned_cols=200  Identities=12%  Similarity=0.107  Sum_probs=116.1

Q ss_pred             eEEECCEEEEEeCCCCeEEEEeCCCCC--CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          150 FRIFGDTVIFSNYKDQRLYKHSIDSKD--SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~--~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      |-+..++|||++...+.|++.++++..  +..+.+....   ......+++++.++.|++. +..       ...|.+++
T Consensus        37 ~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~---~~~p~glAvD~~~~~lY~~-d~~-------~~~I~v~~  105 (266)
T d1ijqa1          37 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---IQAPDGLAVDWIHSNIYWT-DSV-------LGTVSVAD  105 (266)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEC--------CEEEECSS---CSCCCEEEEETTTTEEEEE-ETT-------TTEEEEEE
T ss_pred             EEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCC---CCCcceEEEeeccceEEEE-ecC-------CCEEEeEe
Confidence            333467999998778899999987521  1222222210   1233456777778887765 322       24799999


Q ss_pred             CCCCCccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCc
Q 008927          228 LNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (548)
Q Consensus       228 l~~g~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~  306 (548)
                      +++..   .+.+.. +...-....+.|...+|.|+.+..      ...|+.+++++..    ...+.... -  .....+
T Consensus       106 ~~g~~---~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~------~~~I~r~~~dGs~----~~~l~~~~-~--~~p~gl  169 (266)
T d1ijqa1         106 TKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------PAKIKKGGLNGVD----IYSLVTEN-I--QWPNGI  169 (266)
T ss_dssp             TTSSS---EEEEEECTTCCEEEEEEETTTTEEEEEECSS------SCEEEEEETTSCC----EEEEECSS-C--SCEEEE
T ss_pred             cCCce---EEEEEcCCCCCcceEEEEcccCeEEEeccCC------CcceeEeccCCCc----eecccccc-c--ceeeEE
Confidence            99886   555443 333445667888888888876432      3579999987422    23333221 0  234567


Q ss_pred             eECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927          307 KWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (548)
Q Consensus       307 ~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~  385 (548)
                      .+.+.++ ||+. |.  +...|.++++++...+.+.........|.      .++.     +++.||++-  .+...|++
T Consensus       170 ~iD~~~~~lYw~-d~--~~~~I~~~~~dG~~~~~~~~~~~~~~~p~------~lav-----~~~~ly~td--~~~~~I~~  233 (266)
T d1ijqa1         170 TLDLLSGRLYWV-DS--KLHSISSIDVNGGNRKTILEDEKRLAHPF------SLAV-----FEDKVFWTD--IINEAIFS  233 (266)
T ss_dssp             EEETTTTEEEEE-ET--TTTEEEEEETTSCSCEEEEECTTTTSSEE------EEEE-----ETTEEEEEE--TTTTEEEE
T ss_pred             EeeccccEEEEe-cC--CcCEEEEEECCCCCEEEEEeCCCcccccE------EEEE-----ECCEEEEEE--CCCCeEEE
Confidence            7888777 6665 43  23478999997766555542211111110      1233     567787653  33456888


Q ss_pred             EECCCCc
Q 008927          386 LDDFGHS  392 (548)
Q Consensus       386 ~dl~~g~  392 (548)
                      ++..+|+
T Consensus       234 ~~~~~g~  240 (266)
T d1ijqa1         234 ANRLTGS  240 (266)
T ss_dssp             EETTTCC
T ss_pred             EECCCCc
Confidence            8876664

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.02  E-value=0.0005  Score=64.66  Aligned_cols=108  Identities=11%  Similarity=0.019  Sum_probs=67.9

Q ss_pred             eeeEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCC-CCceecceeeCCCCCEEEEEEeccCC---CCCCceeE
Q 008927          148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGE-PLVSYADGIFDPRFNRYVTVREDRRQ---DALNSTTE  222 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~-~~~~~~~~~~SpDG~~i~~v~~~~~~---~~~~~~~~  222 (548)
                      .+|+|||+.|+.....++.|+++|+.+  ++.. .+...... .........++|||+.++........   ........
T Consensus        39 i~~spDg~~l~v~~~~~~~v~v~D~~t--~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~  116 (337)
T d1pbyb_          39 PMVAPGGRIAYATVNKSESLVKIDLVT--GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR  116 (337)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTT--CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred             EEECCCCCEEEEEECCCCeEEEEECCC--CcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccc
Confidence            467888888877777778999999987  5543 33221100 01224467899999998775433210   00012357


Q ss_pred             EEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEE
Q 008927          223 IVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAW  260 (548)
Q Consensus       223 l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~  260 (548)
                      +.++|..+++   ...............|||||++++.
T Consensus       117 ~~~~d~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~  151 (337)
T d1pbyb_         117 VALYDAETLS---RRKAFEAPRQITMLAWARDGSKLYG  151 (337)
T ss_dssp             EEEEETTTTE---EEEEEECCSSCCCEEECTTSSCEEE
T ss_pred             eeeccccCCe---EEEeccccCCceEEEEcCCCCEEEE
Confidence            8889999887   4444444444556689999998864

>d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase
domain: Carboxylesterase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=97.98  E-value=4.5e-06  Score=80.15  Aligned_cols=75  Identities=19%  Similarity=0.197  Sum_probs=54.3

Q ss_pred             CccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccc-cCccChHHHHHHhcCc-EEEEeCCCC
Q 008927          457 YFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILNLSIQYWTSRGW-AFVDVNYGG  534 (548)
Q Consensus       457 ~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~-~~~~~~~~Q~~asrGy-aVl~~NyRG  534 (548)
                      .....+.++++.  +|.+|.+.+|.|++.      .+++|+||++|||-...- ...+....+.++++|+ .|+.+|||.
T Consensus        42 ~~~~~~~~~~~~--~g~~i~~~~y~P~~~------~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~a~~~~~~v~~v~Yrl  113 (308)
T d1u4na_          42 PVAEVREFDMDL--PGRTLKVRMYRPEGV------EPPYPALVYYHGGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRL  113 (308)
T ss_dssp             CCSEEEEEEEEE--TTEEEEEEEEECTTC------CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCC
T ss_pred             CCCcEEEEEEec--CCceEEEEEEecccc------CCCCCEEEEEecCeeeeeccccccchhhhhhhccccccccccccc
Confidence            344456777776  799999999999752      347899999999965332 2334455677888775 588899999


Q ss_pred             CCCCC
Q 008927          535 STGLS  539 (548)
Q Consensus       535 StGyG  539 (548)
                      +..+.
T Consensus       114 ~p~~~  118 (308)
T d1u4na_         114 APEHK  118 (308)
T ss_dssp             TTTSC
T ss_pred             ccccc
Confidence            87753

>d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase
domain: Carboxylesterase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.94  E-value=5.2e-06  Score=80.05  Aligned_cols=71  Identities=17%  Similarity=0.101  Sum_probs=50.8

Q ss_pred             ccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccc-cCccChHHHHH-HhcCcEEEEeCCCCC
Q 008927          458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILNLSIQYW-TSRGWAFVDVNYGGS  535 (548)
Q Consensus       458 ~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~-~~~~~~~~Q~~-asrGyaVl~~NyRGS  535 (548)
                      +...|.+++++. +| +|...+|.|+.         +.|+||++|||-...- ...+....+.+ ++.||+|+.+|||.+
T Consensus        53 ~~~~~~~~i~~~-~g-~i~~~iy~P~~---------~~P~il~iHGGg~~~g~~~~~~~~~~~l~~~~g~~Vv~v~Yrla  121 (311)
T d1jjia_          53 VERVEDRTIKGR-NG-DIRVRVYQQKP---------DSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLA  121 (311)
T ss_dssp             CSEEEEEEEEET-TE-EEEEEEEESSS---------SEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCT
T ss_pred             cceEEEEEEeCC-CC-cEEEEEEcCCC---------CceEEEEEcCCCCccCChhhhhhhhhhhhhcCCcEEEEeccccc
Confidence            345677888886 76 79999999952         2499999999965332 22233344445 556999999999999


Q ss_pred             CCCC
Q 008927          536 TGLS  539 (548)
Q Consensus       536 tGyG  539 (548)
                      .++.
T Consensus       122 p~~~  125 (311)
T d1jjia_         122 PEHK  125 (311)
T ss_dssp             TTSC
T ss_pred             cccc
Confidence            8764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.90  E-value=0.00024  Score=69.61  Aligned_cols=171  Identities=11%  Similarity=0.045  Sum_probs=92.5

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceec---CCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPI---TPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~l---T~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~  225 (548)
                      .|+|||+.|+-.+.....|++++.+.. +....+   ....  ....-....++|||+.++.+.+.        .+.|.+
T Consensus       151 ~~sPdG~~l~v~d~g~d~v~~~~~~~~-g~~~~~~~~~~~~--~g~gPr~i~f~pdg~~~yv~~e~--------~~~V~v  219 (365)
T d1jofa_         151 VFDPTETYLYSADLTANKLWTHRKLAS-GEVELVGSVDAPD--PGDHPRWVAMHPTGNYLYALMEA--------GNRICE  219 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTT-SCEEEEEEEECSS--TTCCEEEEEECTTSSEEEEEETT--------TTEEEE
T ss_pred             EECCCCCEEEEeeCCCCEEEEEEccCC-CceeeccceeecC--CCCceEEEEECCCCceEEEeccC--------CCEEEE
Confidence            577788888887766678888776532 332211   1110  11223346799999976555432        246777


Q ss_pred             EECCCCCccCcEEeee-----------------cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceee
Q 008927          226 IALNGQNIQEPKVLVS-----------------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK  288 (548)
Q Consensus       226 idl~~g~~~~~~~L~~-----------------~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~  288 (548)
                      ++++++.......+..                 .........+||||++|+...+.+.. . ....|....++..+.+..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~-~-~~~~i~~~~~~~~g~~~~  297 (365)
T d1jofa_         220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF-E-LQGYIAGFKLRDCGSIEK  297 (365)
T ss_dssp             EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST-T-SCCEEEEEEECTTSCEEE
T ss_pred             EEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCC-c-cceEEEEEEecCCCceee
Confidence            7776654100011100                 00112345799999988644332211 1 123566777766565433


Q ss_pred             eEEEcCCC-CCcccCCcCceECc-CCcEEEEEeCCCCeeeEEEEeccC
Q 008927          289 RVCVAGFD-PTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESN  334 (548)
Q Consensus       289 ~~~l~~~~-~~~~~~~~~~~wsp-DG~L~~~sd~~~g~~~Ly~~d~~~  334 (548)
                      ...+.... .+  .....+.++| ||+++++++..++.-.+|+++.++
T Consensus       298 ~~~~~~~~~~G--~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         298 QLFLSPTPTSG--GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEEECSSCC--TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EeEeeEEEcCC--CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            22221110 01  2345577888 799777776657777788776543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.90  E-value=0.0005  Score=64.03  Aligned_cols=151  Identities=8%  Similarity=0.005  Sum_probs=85.7

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      .|++++..++...  ++.+.+.+..    +...+...     .......|+||++.|+....+         ..|.++|+
T Consensus       106 ~~s~~g~~~~~~~--~~~i~~~~~~----~~~~~~~~-----~~~~~~~~s~~~~~l~~g~~d---------g~i~~~d~  165 (299)
T d1nr0a2         106 AVSADGDIAVAAC--YKHIAIYSHG----KLTEVPIS-----YNSSCVALSNDKQFVAVGGQD---------SKVHVYKL  165 (299)
T ss_dssp             EECTTSSCEEEEE--SSEEEEEETT----EEEEEECS-----SCEEEEEECTTSCEEEEEETT---------SEEEEEEE
T ss_pred             ccccccccccccc--cccccccccc----cccccccc-----ccccccccccccccccccccc---------cccccccc
Confidence            3444555555444  3455555532    22222221     123446799999987664332         36888888


Q ss_pred             CCCCccCcEEe--eecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCc
Q 008927          229 NGQNIQEPKVL--VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (548)
Q Consensus       229 ~~g~~~~~~~L--~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~  306 (548)
                      .+++   ...+  ...........|+|||+.|+....        ...|++.++...........+....    ..+...
T Consensus       166 ~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--------d~~i~~~~~~~~~~~~~~~~~~~h~----~~v~~l  230 (299)
T d1nr0a2         166 SGAS---VSEVKTIVHPAEITSVAFSNNGAFLVATDQ--------SRKVIPYSVANNFELAHTNSWTFHT----AKVACV  230 (299)
T ss_dssp             ETTE---EEEEEEEECSSCEEEEEECTTSSEEEEEET--------TSCEEEEEGGGTTEESCCCCCCCCS----SCEEEE
T ss_pred             cccc---cccccccccccccccccccccccccccccc--------ccccccccccccccccccccccccc----cccccc
Confidence            8776   3332  233445667789999998874431        3468888987432211111122212    346678


Q ss_pred             eECcCCcEEEEEeCCCCeeeEEEEeccCCee
Q 008927          307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEV  337 (548)
Q Consensus       307 ~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~  337 (548)
                      .|+|||++++.... +|  .|+.+|+.+++.
T Consensus       231 ~~s~~~~~l~sgs~-dg--~i~iwd~~~~~~  258 (299)
T d1nr0a2         231 SWSPDNVRLATGSL-DN--SVIVWNMNKPSD  258 (299)
T ss_dssp             EECTTSSEEEEEET-TS--CEEEEETTCTTS
T ss_pred             cccccccceEEEcC-CC--EEEEEECCCCCc
Confidence            99999995555443 44  466677766543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.89  E-value=0.0014  Score=63.84  Aligned_cols=124  Identities=9%  Similarity=-0.008  Sum_probs=64.5

Q ss_pred             cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCC
Q 008927          194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (548)
Q Consensus       194 ~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~  272 (548)
                      ..+.++|||+.|+.+.+.        ....|.++.+++.   ...... ....-....++|||+.+..+..+..     .
T Consensus        43 s~la~s~d~~~ly~~~~~--------~~~~~~i~~~~~~---~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~-----~  106 (365)
T d1jofa_          43 SWMTFDHERKNIYGAAMK--------KWSSFAVKSPTEI---VHEASHPIGGHPRANDADTNTRAIFLLAAKQP-----P  106 (365)
T ss_dssp             SEEEECTTSSEEEEEEBT--------EEEEEEEEETTEE---EEEEEEECCSSGGGGCTTSCCEEEEEEECSST-----T
T ss_pred             CEEEEcCCCCEEEEEeCC--------cEEEEEEeCCCCe---EEEeeecCCCCcEEEEECCCCCEEEEEEecCC-----C
Confidence            447799999987665322        2467888876664   333321 1222234468999987654443321     2


Q ss_pred             ceEEEEEecCCC------------ceeeeEE-EcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCee
Q 008927          273 AELWVGYISENG------------DVYKRVC-VAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV  337 (548)
Q Consensus       273 ~~L~v~~~~~~g------------~~~~~~~-l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~  337 (548)
                      ..++...+...+            .+..... ..... .  ..++...|+|||+.+|+.|.+.+.-.+|.++. +++.
T Consensus       107 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~-~--~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~-~g~~  180 (365)
T d1jofa_         107 YAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQE-N--TGIHGMVFDPTETYLYSADLTANKLWTHRKLA-SGEV  180 (365)
T ss_dssp             CCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCT-T--CCEEEEEECTTSSEEEEEETTTTEEEEEEECT-TSCE
T ss_pred             CEEEEeEccCCCCcceeEeeeecceecCcccCcccCC-C--CcceEEEECCCCCEEEEeeCCCCEEEEEEccC-CCce
Confidence            345554443222            1111000 01111 1  23467889999996677776455444555443 3443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.88  E-value=0.00071  Score=64.59  Aligned_cols=243  Identities=12%  Similarity=0.106  Sum_probs=123.2

Q ss_pred             eeeEEECCEEEEEeCC-------CCeEEEEeCCCCCCCceecCCCCCCC-CceecceeeCCCCCEEEEEEeccCCCCCCc
Q 008927          148 GAFRIFGDTVIFSNYK-------DQRLYKHSIDSKDSSPLPITPDYGEP-LVSYADGIFDPRFNRYVTVREDRRQDALNS  219 (548)
Q Consensus       148 ~~~~~~~~~i~F~~~~-------~~~Ly~~~~~~~~~~~~~lT~~~~~~-~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~  219 (548)
                      .+|.++| .|+|++..       +++|+++++++  +..+.+....... ...-..+.+++||+.|++ ...        
T Consensus        23 pa~d~dG-~ly~~~~~~~~~~~~~g~I~r~d~~~--~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~v-ad~--------   90 (314)
T d1pjxa_          23 PVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKT--GKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADM--------   90 (314)
T ss_dssp             EEECTTS-CEEEEETTCEETTEECCEEEEECTTT--CCEEEEECCEETTEECCEEEEEECSSSSEEEE-EET--------
T ss_pred             eEEeCCC-CEEEEECccccccccCCEEEEEECCC--CcEEEEECCccccCCCcceeEEEeCCCCEEEE-EEC--------
Confidence            3454443 57777533       35799999987  5444332210000 011235789999987654 322        


Q ss_pred             eeEEEEEECCCCCccCcEEeeecCC---c--eeeeEECCCCCEEEEEEecCCCCCC--------CCceEEEEEecCCCce
Q 008927          220 TTEIVAIALNGQNIQEPKVLVSGSD---F--YAFPRMDPRGERMAWIEWHHPNMPW--------DKAELWVGYISENGDV  286 (548)
Q Consensus       220 ~~~l~~idl~~g~~~~~~~L~~~~~---~--~~~p~~SPDGk~La~~~~~~~~~p~--------~~~~L~v~~~~~~g~~  286 (548)
                      ...|++++.+++.   ...+....+   +  -....+.|||+ |.+........++        ....||.++.+  |+.
T Consensus        91 ~~~i~~~~~~g~~---~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d--g~~  164 (314)
T d1pjxa_          91 RLGLLVVQTDGTF---EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQM  164 (314)
T ss_dssp             TTEEEEEETTSCE---EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCE
T ss_pred             CCeEEEEeCCCcE---EEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeec--Cce
Confidence            2468999998875   333332211   1  13457899996 4433211100011        12467777653  542


Q ss_pred             eeeEEEcCCCCCcccCCcCceECcCCc----EEEEEeCCCCeeeEEEEeccC-CeeE--eec-ccc-cccCCCcccccCc
Q 008927          287 YKRVCVAGFDPTIVESPTEPKWSSKGE----LFFVTDRKNGFWNLHKWIESN-NEVL--AIY-SLD-AEFSRPLWVFGIN  357 (548)
Q Consensus       287 ~~~~~l~~~~~~~~~~~~~~~wspDG~----L~~~sd~~~g~~~Ly~~d~~~-g~~~--~l~-~~~-~d~~~p~w~~~~~  357 (548)
                      .  ....+.     .......|+||++    .+|++|.  ....|+++++.. +.+.  ++. ... .....|      .
T Consensus       165 ~--~~~~~~-----~~pNGi~~~~d~d~~~~~lyv~d~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~p------d  229 (314)
T d1pjxa_         165 I--QVDTAF-----QFPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA------D  229 (314)
T ss_dssp             E--EEEEEE-----SSEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE------E
T ss_pred             e--EeeCCc-----ceeeeeEECCCCCcceeEEEEEee--cccceEEeeccCccccceeeEEEEccccccccc------e
Confidence            1  222211     1223567888753    4566665  334687777543 3332  121 100 000111      1


Q ss_pred             ceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 008927          358 SYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLD  432 (548)
Q Consensus       358 ~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~  432 (548)
                      .+.+.    .++.||++..  +..+|+++|+++++.. .+..+......+  .+|++.||++.+.   ...||++++.
T Consensus       230 GiavD----~~GnlyVa~~--~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~---~g~i~~~~~~  298 (314)
T d1pjxa_         230 GMDFD----EDNNLLVANW--GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE---NNAVWKFEWQ  298 (314)
T ss_dssp             EEEEB----TTCCEEEEEE--TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT---TTEEEEEECS
T ss_pred             eeEEe----cCCcEEEEEc--CCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECC---CCcEEEEECC
Confidence            13332    2345654432  3457899999888643 455554333333  5667777765532   3689999864

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=0.014  Score=53.18  Aligned_cols=241  Identities=11%  Similarity=0.057  Sum_probs=123.1

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +|+|++..| .+...|+.|.+-++..+ ...+.+...    ...+..+.|+|++..++....+.         .+...+.
T Consensus        24 ~~sp~~~~l-~s~s~Dg~i~iWd~~~~-~~~~~~~~h----~~~V~~~~~~~~~~~~~~~~~~~---------~~~~~~~   88 (317)
T d1vyhc1          24 IFHPVFSVM-VSASEDATIKVWDYETG-DFERTLKGH----TDSVQDISFDHSGKLLASCSADM---------TIKLWDF   88 (317)
T ss_dssp             EECSSSSEE-EEEESSSCEEEEETTTC-CCCEEECCC----SSCEEEEEECTTSSEEEEEETTS---------CCCEEET
T ss_pred             EEcCCCCEE-EEEeCCCeEEEEECCCC-CEEEEEeCC----CCcEEEEeeeccccccccccccc---------ccccccc
Confidence            456666544 45556777777787762 233445432    22456778999999877653322         2444555


Q ss_pred             CCCCccCcEEee-ecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927          229 NGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (548)
Q Consensus       229 ~~g~~~~~~~L~-~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  307 (548)
                      ...+   ..... ..........++|+++.|+....        ...+.+.++.. +.  ....+.+..    ..+....
T Consensus        89 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------d~~~~~~~~~~-~~--~~~~~~~~~----~~~~~~~  150 (317)
T d1vyhc1          89 QGFE---CIRTMHGHDHNVSSVSIMPNGDHIVSASR--------DKTIKMWEVQT-GY--CVKTFTGHR----EWVRMVR  150 (317)
T ss_dssp             TSSC---EEECCCCCSSCEEEEEECSSSSEEEEEET--------TSEEEEEETTT-CC--EEEEEECCS----SCEEEEE
T ss_pred             cccc---cccccccccccceeeeccCCCceEEeecc--------CcceeEeeccc-ce--eeeEEccCC----Ccceeee
Confidence            5554   33222 22334556789999998875542        34677888874 43  233344332    3456678


Q ss_pred             ECcCCcEEEEEeCCCCeeeEEEEeccCCeeEe-ecccccccCCCccc-----------ccCcceeeeeecCCCCEEEEEE
Q 008927          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWV-----------FGINSYEIIQSHGEKNLIACSY  375 (548)
Q Consensus       308 wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~-l~~~~~d~~~p~w~-----------~~~~~~~~~~~~~d~~~l~~~~  375 (548)
                      |++|+++++.... ++  .+..++..+++... +...........|.           .+.......    ..+.++++.
T Consensus       151 ~~~~~~~l~~~~~-d~--~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  223 (317)
T d1vyhc1         151 PNQDGTLIASCSN-DQ--TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG----KPGPFLLSG  223 (317)
T ss_dssp             ECTTSSEEEEEET-TS--CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----------CCEEEEE
T ss_pred             cccCCCEEEEEeC-CC--eEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeec----cCCceeEec
Confidence            9999995555444 34  34455554544322 11100000000000           000000111    122344444


Q ss_pred             EeCCeEEEEEEECCCCceE-eecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          376 RQNGRSYLGILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       376 ~~~g~~~L~~~dl~~g~~~-~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      ..++  .+.++|+.+++.. .+......+..+  +++++.|+ .++.   -..|.++|+.+++
T Consensus       224 ~~d~--~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~---dg~i~iwd~~~~~  280 (317)
T d1vyhc1         224 SRDK--TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCAD---DKTLRVWDYKNKR  280 (317)
T ss_dssp             ETTS--EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEE-EEET---TTEEEEECCTTSC
T ss_pred             cCCC--EEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEE-EEEC---CCeEEEEECCCCc
Confidence            4454  4566788777643 343333334444  56666554 3332   2578888887765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.74  E-value=0.00014  Score=69.07  Aligned_cols=102  Identities=7%  Similarity=0.002  Sum_probs=61.4

Q ss_pred             eeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE-ee-ecCCceeeeEECCCCCEEEEEEecCCCCCCCCc
Q 008927          196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV-LV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA  273 (548)
Q Consensus       196 ~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~-L~-~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~  273 (548)
                      +++|++|+.++...++         +.|.++|+++++   ... +. ..........|||||++|+ +....      ..
T Consensus         2 ~a~~~~~~~l~~~~~~---------~~v~v~D~~t~~---~~~t~~~~~~~~p~~l~~spDG~~l~-v~~~~------~~   62 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYP---------NNLHVVDVASDT---VYKSCVMPDKFGPGTAMMAPDNRTAY-VLNNH------YG   62 (346)
T ss_dssp             CCCCTTCEEEEEEETT---------TEEEEEETTTTE---EEEEEECSSCCSSCEEEECTTSSEEE-EEETT------TT
T ss_pred             ccCCCCCcEEEEEcCC---------CEEEEEECCCCC---EEEEEEcCCCCCcceEEECCCCCEEE-EEECC------CC
Confidence            5789999987765332         479999999987   432 32 1222345678999999875 44221      35


Q ss_pred             eEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEE
Q 008927          274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFV  317 (548)
Q Consensus       274 ~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~  317 (548)
                      .|++.|+.. ++......................|+|||+ +|+.
T Consensus        63 ~v~~~d~~t-~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~  106 (346)
T d1jmxb_          63 DIYGIDLDT-CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYAT  106 (346)
T ss_dssp             EEEEEETTT-TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEE
T ss_pred             cEEEEeCcc-CeeeeeecccccccccCCceEEEEEecCCCEEEEE
Confidence            799999984 542111111111100002345788999999 5554

>d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase
domain: Feruloyl esterase domain of the cellulosomal xylanase y
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.73  E-value=3.4e-05  Score=72.02  Aligned_cols=79  Identities=16%  Similarity=0.155  Sum_probs=56.7

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccC-ccChHHHH----H----HhcCcEEEEe
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQY----W----TSRGWAFVDV  530 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~-~~~~~~Q~----~----asrGyaVl~~  530 (548)
                      +.|.++|++. +| +...++|.|.+  |+  ++++||+|++.|||+...... .+....+.    +    ....+.|+.+
T Consensus        26 ~v~~~~~~~~-~~-~r~~~vylP~~--y~--~~k~yPvl~~lhG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   99 (273)
T d1wb4a1          26 RIVKETYTGI-NG-TKSLNVYLPYG--YD--PNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTP   99 (273)
T ss_dssp             EEEEEEEEET-TE-EEEEEEEECTT--CC--TTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHHTSSCCEEEEEC
T ss_pred             eEEEEEEecC-CC-eEEEEEEeCCC--CC--CCCCceEEEEEeCCCCCcchhhhhccchhHHHHhhhhhhccCCceeecc
Confidence            5688999997 77 56999999965  76  378999999999998543221 11111111    1    2247999999


Q ss_pred             CCCCCCCCChhhhh
Q 008927          531 NYGGSTGLSSVPST  544 (548)
Q Consensus       531 NyRGStGyG~~f~~  544 (548)
                      +++++.++++.|..
T Consensus       100 ~~~~~~~~~~~~~~  113 (273)
T d1wb4a1         100 TFNGGNCTAQNFYQ  113 (273)
T ss_dssp             CSCSTTCCTTTHHH
T ss_pred             ccCCCCCccccchh
Confidence            99999999988654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=0.014  Score=55.70  Aligned_cols=211  Identities=12%  Similarity=-0.021  Sum_probs=103.1

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +|++++..|+- ...++.|...+...  ++.......   ....+....+++++..++....+         ..+..+|+
T Consensus       128 ~~s~~~~~l~s-~~~dg~v~i~~~~~--~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~---------~~i~~~d~  192 (388)
T d1erja_         128 CFSPDGKFLAT-GAEDRLIRIWDIEN--RKIVMILQG---HEQDIYSLDYFPSGDKLVSGSGD---------RTVRIWDL  192 (388)
T ss_dssp             EECTTSSEEEE-EETTSCEEEEETTT--TEEEEEECC---CSSCEEEEEECTTSSEEEEEETT---------SEEEEEET
T ss_pred             EECCCCCccee-cccccccccccccc--ccccccccc---ccccccccccccccccccccccc---------eeeeeeec
Confidence            45566655544 44667788878765  333322221   11235567799999887665322         36888898


Q ss_pred             CCCCccCcEEeeecCCceeee-EECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCC---CCcccCCc
Q 008927          229 NGQNIQEPKVLVSGSDFYAFP-RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD---PTIVESPT  304 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~~~~~~p-~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~---~~~~~~~~  304 (548)
                      .+..   ........+..... .+++||+.|+....        ...|++.++.. +..  ...+....   ......+.
T Consensus       193 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------d~~i~i~~~~~-~~~--~~~~~~~~~~~~~h~~~v~  258 (388)
T d1erja_         193 RTGQ---CSLTLSIEDGVTTVAVSPGDGKYIAAGSL--------DRAVRVWDSET-GFL--VERLDSENESGTGHKDSVY  258 (388)
T ss_dssp             TTTE---EEEEEECSSCEEEEEECSTTCCEEEEEET--------TSCEEEEETTT-CCE--EEEEC------CCCSSCEE
T ss_pred             cccc---cccccccccccccccccCCCCCeEEEEcC--------CCeEEEeeccc-Ccc--ceeeccccccccCCCCCEE
Confidence            8875   44433333333333 34558887774431        24588888874 431  11111100   00003466


Q ss_pred             CceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecc--ccccc--CCCcccccCcceeeeeecCCCCEEEEEEEeCCe
Q 008927          305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS--LDAEF--SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR  380 (548)
Q Consensus       305 ~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~--~~~d~--~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~  380 (548)
                      ...|+|||++++.... +|  .|..+++.+++......  .....  .............+.|   +++.| ++...+| 
T Consensus       259 ~l~~s~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l-~sg~~dg-  330 (388)
T d1erja_         259 SVVFTRDGQSVVSGSL-DR--SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ---NDEYI-LSGSKDR-  330 (388)
T ss_dssp             EEEECTTSSEEEEEET-TS--EEEEEEC---------------CEEEEEECCSSCEEEEEECG---GGCEE-EEEETTS-
T ss_pred             EEEECCCCCEEEEEEC-CC--cEEEEeccCCccccccccccccceeeecccccceEEEEEECC---CCCEE-EEEeCCC-
Confidence            7899999995555544 45  45555554443221110  00000  0000000111234553   55544 4555555 


Q ss_pred             EEEEEEECCCCceE-eec
Q 008927          381 SYLGILDDFGHSLS-LLD  397 (548)
Q Consensus       381 ~~L~~~dl~~g~~~-~l~  397 (548)
                       .|+++|+.+++.. .+.
T Consensus       331 -~i~vwd~~~~~~~~~l~  347 (388)
T d1erja_         331 -GVLFWDKKSGNPLLMLQ  347 (388)
T ss_dssp             -EEEEEETTTCCEEEEEE
T ss_pred             -EEEEEECCCCcEEEEEe
Confidence             4677788888643 444

>d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Lipase
domain: Lipase
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=97.64  E-value=2.2e-05  Score=73.39  Aligned_cols=60  Identities=12%  Similarity=0.103  Sum_probs=46.3

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCChh
Q 008927          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSV  541 (548)
Q Consensus       475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~~  541 (548)
                      ..|.||+|++.     .++++|+||++||+....  ..+....+.||++||+|+.+|++|..+....
T Consensus        37 ~~~~ly~P~~~-----~~g~~P~Vv~~HG~~g~~--~~~~~~a~~lA~~Gy~V~~~d~~~~~~~~~~   96 (260)
T d1jfra_          37 GGGTIYYPTST-----ADGTFGAVVISPGFTAYQ--SSIAWLGPRLASQGFVVFTIDTNTTLDQPDS   96 (260)
T ss_dssp             CCEEEEEESCC-----TTCCEEEEEEECCTTCCG--GGTTTHHHHHHTTTCEEEEECCSSTTCCHHH
T ss_pred             cCEEEEEcCCC-----CCCCccEEEEECCCCCCH--HHHHHHHHHHHhCCCEEEEEeeCCCcCCchh
Confidence            45788999652     246789999999986443  3456778999999999999999988766443

>d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: PepX catalytic domain-like
domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.64  E-value=5.2e-05  Score=75.68  Aligned_cols=74  Identities=19%  Similarity=0.249  Sum_probs=51.6

Q ss_pred             eEEEeecc----CCCe--EEEEEEEcCCCCCCCCCCCCCCcEEEEEc---------------------------------
Q 008927          462 ELIEFPTE----VPGQ--KAYAYYYPPSNPIYQASPEEKPPLLVKSH---------------------------------  502 (548)
Q Consensus       462 e~i~~~s~----~dG~--~i~g~l~~P~~~~~~~~~~~~~Pliv~iH---------------------------------  502 (548)
                      |.+.+++.    .||+  .++.-||.|+.       .+|+|+|+..+                                 
T Consensus        24 e~v~v~~~~dt~rDG~~d~l~~di~rP~~-------~~k~Pvil~~sPY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (405)
T d1lnsa3          24 EVLWVESPVDSEQRGENDLIKIQIIRPKS-------TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVE   96 (405)
T ss_dssp             EEEEEECSCCTTCSSSCCEEEEEEEECCC-------SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCC
T ss_pred             eEEEEeCCCCCCCCCCEeEEEEEEEccCC-------CCCceEEEEeCCcCCCCccccccccccccccccccccccccccc
Confidence            55666543    2798  59999999964       35789998432                                 


Q ss_pred             ------------------cCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCChhh
Q 008927          503 ------------------GGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSVP  542 (548)
Q Consensus       503 ------------------GGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~~f  542 (548)
                                        ++|.........+..|+||+|||+|+.+|.||+.+-+-.|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GYavv~~D~RG~g~S~G~~  154 (405)
T d1lnsa3          97 QKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQ  154 (405)
T ss_dssp             CCCCCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCC
T ss_pred             cccccccccccccccccccccccccccccccchHHHHhCCCEEEEECCCCCCCCCCcc
Confidence                              2233333333345679999999999999999998865544

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.62  E-value=0.0043  Score=57.83  Aligned_cols=60  Identities=12%  Similarity=0.042  Sum_probs=41.5

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEE
Q 008927          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE  262 (548)
Q Consensus       192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~  262 (548)
                      .+..+.|+||++.|+....+         ..|.++|+.+++.  ...+......+....|+|||+.|+...
T Consensus        57 ~I~~l~~s~~~~~l~sgs~D---------g~v~iWd~~~~~~--~~~~~~~~~~v~~v~~~~~~~~l~~~~  116 (340)
T d1tbga_          57 KIYAMHWGTDSRLLVSASQD---------GKLIIWDSYTTNK--VHAIPLRSSWVMTCAYAPSGNYVACGG  116 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETT---------TEEEEEETTTTEE--EEEEECSCSCEEEEEECTTSSEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEECC---------Cceeeeeccccee--EEEEecccccEEeeEeeccceeeeeec
Confidence            35677899999987665433         3688889988861  233333344567788999999887543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.56  E-value=0.011  Score=55.28  Aligned_cols=202  Identities=12%  Similarity=0.023  Sum_probs=103.8

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCC
Q 008927          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (548)
Q Consensus       193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~  272 (548)
                      ..+++++|||+ |+++ +..       ...|++++.++.    .+.+..........+++|||+ |....+.       .
T Consensus        30 ~e~iAv~pdG~-l~vt-~~~-------~~~I~~i~p~g~----~~~~~~~~~~~~gla~~~dG~-l~v~~~~-------~   88 (302)
T d2p4oa1          30 LENLASAPDGT-IFVT-NHE-------VGEIVSITPDGN----QQIHATVEGKVSGLAFTSNGD-LVATGWN-------A   88 (302)
T ss_dssp             EEEEEECTTSC-EEEE-ETT-------TTEEEEECTTCC----EEEEEECSSEEEEEEECTTSC-EEEEEEC-------T
T ss_pred             cCCEEECCCCC-EEEE-eCC-------CCEEEEEeCCCC----EEEEEcCCCCcceEEEcCCCC-eEEEecC-------C
Confidence            44678999997 4443 322       257999997764    456665555566678999998 3323322       3


Q ss_pred             ceEEEEEecC-CCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccc--cccCC
Q 008927          273 AELWVGYISE-NGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD--AEFSR  349 (548)
Q Consensus       273 ~~L~v~~~~~-~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~--~d~~~  349 (548)
                      ..++++++.. .+.   ...+......  .......+.+||++|+. +.  +...+|++++.++.........  .....
T Consensus        89 ~~~~~~~~~~~~~~---~~~~~~~~~~--~~~n~i~~~~~g~~~v~-~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  160 (302)
T d2p4oa1          89 DSIPVVSLVKSDGT---VETLLTLPDA--IFLNGITPLSDTQYLTA-DS--YRGAIWLIDVVQPSGSIWLEHPMLARSNS  160 (302)
T ss_dssp             TSCEEEEEECTTSC---EEEEEECTTC--SCEEEEEESSSSEEEEE-ET--TTTEEEEEETTTTEEEEEEECGGGSCSST
T ss_pred             ceEEEEEecccccc---eeeccccCCc--cccceeEEccCCCEEee-cc--ccccceeeeccCCcceeEecCCccceeec
Confidence            3466666553 222   2222221101  23456778899976554 33  3347899998877654322110  00000


Q ss_pred             CcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-e--ecCCCceeEee--eecCCEEEEEEecCCCCC
Q 008927          350 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-L--LDIPFTDIDNI--TLGNDCLFVEGASGVEPS  424 (548)
Q Consensus       350 p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~--l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~  424 (548)
                      .........+.+     +++.+|+..  .....|++++....... .  +........++  +.+| .||+....   ..
T Consensus       161 ~~~~~~~ngi~~-----~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG-~l~va~~~---~~  229 (302)
T d2p4oa1         161 ESVFPAANGLKR-----FGNFLYVSN--TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG-NLYGATHI---YN  229 (302)
T ss_dssp             TCCSCSEEEEEE-----ETTEEEEEE--TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC-CEEEECBT---TC
T ss_pred             cCcccccccccc-----cCCceeeec--CCCCeEEeccccccccccccccccCCCCCcceEECCCC-CEEEEEcC---CC
Confidence            000111112233     456676644  34457888887554211 1  10011112233  3444 46554432   35


Q ss_pred             eEEEEEcCCC
Q 008927          425 SVAKVTLDDH  434 (548)
Q Consensus       425 ~l~~~d~~~~  434 (548)
                      .|+++++++.
T Consensus       230 ~V~~i~p~G~  239 (302)
T d2p4oa1         230 SVVRIAPDRS  239 (302)
T ss_dssp             CEEEECTTCC
T ss_pred             cEEEECCCCC
Confidence            7899987543

>d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Atu1826-like
domain: XC6422 protein
species: Xanthomonas campestris [TaxId: 339]

Probab=97.48  E-value=0.00013  Score=66.02  Aligned_cols=69  Identities=12%  Similarity=0.079  Sum_probs=48.4

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcc--ccccCc-cChHHHHHHhcCcEEEEeCCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPT--SEARGI-LNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~--~~~~~~-~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +.+.+++++. +| +|++.+..|.. +    ...+.|++|.+|+-|.  +..... +....+.|+++||.|+.+||||.
T Consensus         7 ~~~~l~i~gp-~G-~l~~~~~~p~~-~----~~~~~~~~vl~Hph~~~GG~~~~~~~~~la~~l~~~G~~vlrfd~RG~   78 (218)
T d2fuka1           7 ESAALTLDGP-VG-PLDVAVDLPEP-D----VAVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSV   78 (218)
T ss_dssp             SCEEEEEEET-TE-EEEEEEECCCT-T----SCCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTS
T ss_pred             CceEEEEeCC-Cc-cEEEEEEcCCC-C----CCCCCcEEEEECCCCCCCcCCCChHHHHHHHHHHHcCCeEEEeecCCC
Confidence            3467889997 77 69999999953 1    1345577888885554  121111 22356889999999999999984

>d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Atu1826-like
domain: Hypothetical protein Atu1826
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.47  E-value=7.9e-05  Score=67.48  Aligned_cols=63  Identities=19%  Similarity=0.360  Sum_probs=45.9

Q ss_pred             EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccc--ccC-ccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE--ARG-ILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       464 i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~--~~~-~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      |.+++. +| .|++++.+|.        ++..|++|++||-|..-  ..+ ........|+++||.|+..||||-.
T Consensus         3 v~i~g~-~G-~Le~~~~~~~--------~~~~~~~l~~Hp~p~~GG~~~~~~~~~~a~~l~~~G~~~lrfn~RG~g   68 (218)
T d2i3da1           3 VIFNGP-AG-RLEGRYQPSK--------EKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIG   68 (218)
T ss_dssp             EEEEET-TE-EEEEEEECCS--------STTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTST
T ss_pred             EEEeCC-Cc-cEEEEEeCCC--------CCCCCEEEEECCCcCcCCcCCcHHHHHHHHHHHhcCeeEEEEecCccC
Confidence            668887 88 7999988763        23459999999988422  111 1223456789999999999999943

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.36  E-value=0.0025  Score=59.59  Aligned_cols=132  Identities=14%  Similarity=-0.000  Sum_probs=79.3

Q ss_pred             EEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcE
Q 008927          159 FSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK  237 (548)
Q Consensus       159 F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~  237 (548)
                      .+...++.|.+.++..  ++.. .+...    ...+....|+|+|+.|+....+         ..|..+|+....   ..
T Consensus       200 ~~~~~d~~v~i~d~~~--~~~~~~~~~h----~~~i~~v~~~p~~~~l~s~s~d---------~~i~~~~~~~~~---~~  261 (340)
T d1tbga_         200 VSGACDASAKLWDVRE--GMCRQTFTGH----ESDINAICFFPNGNAFATGSDD---------ATCRLFDLRADQ---EL  261 (340)
T ss_dssp             EEEETTTEEEEEETTT--TEEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTE---EE
T ss_pred             EEeecCceEEEEECCC--CcEEEEEeCC----CCCeEEEEECCCCCEEEEEeCC---------CeEEEEeecccc---cc
Confidence            3334456677777765  4332 33322    1235567899999987765433         357788888765   32


Q ss_pred             Eeeec---CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcE
Q 008927          238 VLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL  314 (548)
Q Consensus       238 ~L~~~---~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L  314 (548)
                      .....   ........|+|||+.|+-.. .       ...|++.|+.. ++  ....+.+..    ..+....|+|||++
T Consensus       262 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~-------dg~i~iwd~~~-~~--~~~~~~~H~----~~V~~l~~s~d~~~  326 (340)
T d1tbga_         262 MTYSHDNIICGITSVSFSKSGRLLLAGY-D-------DFNCNVWDALK-AD--RAGVLAGHD----NRVSCLGVTDDGMA  326 (340)
T ss_dssp             EEECCTTCCSCEEEEEECSSSCEEEEEE-T-------TSCEEEEETTT-CC--EEEEECCCS----SCEEEEEECTTSSC
T ss_pred             cccccccccCceEEEEECCCCCEEEEEE-C-------CCEEEEEECCC-Cc--EEEEEcCCC----CCEEEEEEeCCCCE
Confidence            22211   22255678999999887433 1       34688999874 44  234455433    45778899999994


Q ss_pred             EEEEeCCCCe
Q 008927          315 FFVTDRKNGF  324 (548)
Q Consensus       315 ~~~sd~~~g~  324 (548)
                      ++.... +|.
T Consensus       327 l~s~s~-Dg~  335 (340)
T d1tbga_         327 VATGSW-DSF  335 (340)
T ss_dssp             EEEEET-TSC
T ss_pred             EEEEcc-CCE
Confidence            444433 443

>d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Haloperoxidase
domain: Chloroperoxidase L
species: Streptomyces lividans [TaxId: 1916]

Probab=97.34  E-value=0.00018  Score=66.01  Aligned_cols=57  Identities=19%  Similarity=0.322  Sum_probs=45.4

Q ss_pred             EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCC
Q 008927          465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       465 ~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      ++++. ||.+||-..+-|.+       +   |.||++||.+....  .|...++.|+++||.|+.+|.||
T Consensus         2 ~i~~~-dG~~l~y~~~G~~~-------~---~~vv~lHG~~~~~~--~~~~~~~~l~~~g~~vi~~D~~G   58 (275)
T d1a88a_           2 TVTTS-DGTNIFYKDWGPRD-------G---LPVVFHHGWPLSAD--DWDNQMLFFLSHGYRVIAHDRRG   58 (275)
T ss_dssp             EEECT-TSCEEEEEEESCTT-------S---CEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEEECCTT
T ss_pred             EEEec-CCCEEEEEEecCCC-------C---CeEEEECCCCCCHH--HHHHHHHHHHhCCCEEEEEeccc
Confidence            35676 99999998887632       2   56889999987543  45667788999999999999997

>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Gastric lipase
domain: Gastric lipase
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=97.26  E-value=0.00047  Score=66.46  Aligned_cols=71  Identities=23%  Similarity=0.103  Sum_probs=49.7

Q ss_pred             CCeEEEeeccCCCeEEEEEEEc--CCCCCCCCCCCCCCcEEEEEccCccccccCccC----hHHHHHHhcCcEEEEeCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYP--PSNPIYQASPEEKPPLLVKSHGGPTSEARGILN----LSIQYWTSRGWAFVDVNYG  533 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~--P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~----~~~Q~~asrGyaVl~~NyR  533 (548)
                      +.|...++++ ||..|.-+-++  |.+  .  +..++-|.||++||.+.+...+...    ..+.+|+.+||-|+.+|.|
T Consensus        26 ~~e~h~v~t~-DG~~l~~~ri~~~~~~--~--~~~~~~~~vlllHG~~~~~~~~~~~~~~~sla~~L~~~Gy~V~~~D~r  100 (377)
T d1k8qa_          26 PAEEYEVVTE-DGYILGIDRIPYGRKN--S--ENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSR  100 (377)
T ss_dssp             CCEEEEEECT-TSEEEEEEEECSCSSC--C--TTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCT
T ss_pred             CceEEEEEcC-CCCEEEEEEecCCCCC--C--ccCCCCCeEEEECCCccchhHHhhcCccchHHHHHHHCCCEEEEEcCC
Confidence            3577888998 99766554442  322  1  1234558899999998876544322    2467899999999999999


Q ss_pred             CC
Q 008927          534 GS  535 (548)
Q Consensus       534 GS  535 (548)
                      |-
T Consensus       101 G~  102 (377)
T d1k8qa_         101 GN  102 (377)
T ss_dssp             TS
T ss_pred             CC
Confidence            84

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=0.086  Score=49.80  Aligned_cols=201  Identities=9%  Similarity=0.028  Sum_probs=100.0

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCC
Q 008927          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (548)
Q Consensus       193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~  271 (548)
                      +....|+|||+.|+....+         ..|.++|...++   ...... ....+....|++++..++...        .
T Consensus       124 V~~l~~s~~~~~l~s~~~d---------g~v~i~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~--------~  183 (388)
T d1erja_         124 IRSVCFSPDGKFLATGAED---------RLIRIWDIENRK---IVMILQGHEQDIYSLDYFPSGDKLVSGS--------G  183 (388)
T ss_dssp             EEEEEECTTSSEEEEEETT---------SCEEEEETTTTE---EEEEECCCSSCEEEEEECTTSSEEEEEE--------T
T ss_pred             EEEEEECCCCCcceecccc---------cccccccccccc---cccccccccccccccccccccccccccc--------c
Confidence            4567899999987765433         247788888876   333333 234466778999999887544        1


Q ss_pred             CceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeE-eeccccc-ccCC
Q 008927          272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDA-EFSR  349 (548)
Q Consensus       272 ~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~-~l~~~~~-d~~~  349 (548)
                      ...+.+.+... ..  .........    .......+.+||++++.... +|  .|+.++..+++.. .+..... ..+.
T Consensus       184 ~~~i~~~d~~~-~~--~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~~~~~h  253 (388)
T d1erja_         184 DRTVRIWDLRT-GQ--CSLTLSIED----GVTTVAVSPGDGKYIAAGSL-DR--AVRVWDSETGFLVERLDSENESGTGH  253 (388)
T ss_dssp             TSEEEEEETTT-TE--EEEEEECSS----CEEEEEECSTTCCEEEEEET-TS--CEEEEETTTCCEEEEEC------CCC
T ss_pred             ceeeeeeeccc-cc--ccccccccc----ccccccccCCCCCeEEEEcC-CC--eEEEeecccCccceeeccccccccCC
Confidence            35688888764 32  122222221    11222334457775555444 44  4666777666543 2221100 0011


Q ss_pred             CcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEee-cC------------CCceeEee--eecCCEEE
Q 008927          350 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL-DI------------PFTDIDNI--TLGNDCLF  414 (548)
Q Consensus       350 p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l-~~------------~~~~~~~~--s~d~~~l~  414 (548)
                      ...   .....+.|   +++.| ++...++.  |.++|+.++..... ..            ....+..+  +++++.|+
T Consensus       254 ~~~---v~~l~~s~---~~~~l-~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  324 (388)
T d1erja_         254 KDS---VYSVVFTR---DGQSV-VSGSLDRS--VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL  324 (388)
T ss_dssp             SSC---EEEEEECT---TSSEE-EEEETTSE--EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEE
T ss_pred             CCC---EEEEEECC---CCCEE-EEEECCCc--EEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEE
Confidence            111   12244553   55555 44555554  45556554432211 00            01122333  45666543


Q ss_pred             EEEecCCCCCeEEEEEcCCCce
Q 008927          415 VEGASGVEPSSVAKVTLDDHKL  436 (548)
Q Consensus       415 ~~~ss~~~p~~l~~~d~~~~~~  436 (548)
                       +++.   -..|+++|+.+++.
T Consensus       325 -sg~~---dg~i~vwd~~~~~~  342 (388)
T d1erja_         325 -SGSK---DRGVLFWDKKSGNP  342 (388)
T ss_dssp             -EEET---TSEEEEEETTTCCE
T ss_pred             -EEeC---CCEEEEEECCCCcE
Confidence             4432   25788899887763

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.23  E-value=0.0053  Score=58.01  Aligned_cols=164  Identities=9%  Similarity=-0.005  Sum_probs=82.1

Q ss_pred             ccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEE
Q 008927           90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY  168 (548)
Q Consensus        90 ~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly  168 (548)
                      .+..+.++| |..++.+...  .++...++..+..  .....+......+.       .-.|.++++.++.+...++.+.
T Consensus       117 ~v~~v~~s~~~~~l~~~~~~--~~~~~~~~~~~~~--~~~~~~~~h~~~v~-------~~~~~~~~~~~~~~~~~d~~v~  185 (325)
T d1pgua1         117 PISDISWDFEGRRLCVVGEG--RDNFGVFISWDSG--NSLGEVSGHSQRIN-------ACHLKQSRPMRSMTVGDDGSVV  185 (325)
T ss_dssp             CEEEEEECTTSSEEEEEECC--SSCSEEEEETTTC--CEEEECCSCSSCEE-------EEEECSSSSCEEEEEETTTEEE
T ss_pred             cEEEEEECCCCCccceeecc--ccceEEEEeeccc--ccceeeeecccccc-------cccccccccceEEEeecccccc
Confidence            355677888 6666655421  1344455554322  12222322111111       1245566666555555577777


Q ss_pred             EEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceee
Q 008927          169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAF  248 (548)
Q Consensus       169 ~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~  248 (548)
                      ..+.... .....+..... .........|+||+..+++.....        ..|.++|+.+++.  ...+.........
T Consensus       186 ~~d~~~~-~~~~~~~~~~~-~~~~v~~v~~~pd~~~~l~s~~~d--------~~i~iwd~~~~~~--~~~l~~~~~~v~~  253 (325)
T d1pgua1         186 FYQGPPF-KFSASDRTHHK-QGSFVRDVEFSPDSGEFVITVGSD--------RKISCFDGKSGEF--LKYIEDDQEPVQG  253 (325)
T ss_dssp             EEETTTB-EEEEEECSSSC-TTCCEEEEEECSTTCCEEEEEETT--------CCEEEEETTTCCE--EEECCBTTBCCCS
T ss_pred             ccccccc-ccceecccccC-CCCccEEeeeccccceeccccccc--------cceeeeeeccccc--ccccccccccccc
Confidence            7776541 11122222110 112345678999864444433221        3477889988871  2333322222323


Q ss_pred             eEEC---CCCCEEEEEEecCCCCCCCCceEEEEEecCCCc
Q 008927          249 PRMD---PRGERMAWIEWHHPNMPWDKAELWVGYISENGD  285 (548)
Q Consensus       249 p~~S---PDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~  285 (548)
                      ..|+   |||++|+-.+.        ...|.+.|+.. ++
T Consensus       254 ~~~s~~~~dg~~l~s~s~--------D~~i~iwd~~~-~~  284 (325)
T d1pgua1         254 GIFALSWLDSQKFATVGA--------DATIRVWDVTT-SK  284 (325)
T ss_dssp             CEEEEEESSSSEEEEEET--------TSEEEEEETTT-TE
T ss_pred             ceeeeeccCCCEEEEEeC--------CCeEEEEECCC-CC
Confidence            3344   78998875442        24688889884 54

>d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Ccg1/TafII250-interacting factor B (Cib)
domain: Ccg1/TafII250-interacting factor B (Cib)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00016  Score=64.88  Aligned_cols=58  Identities=16%  Similarity=0.097  Sum_probs=43.3

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +|.+++.....|.+       +...|.||++||.+.....+.....++.|+++||.|+.+|+||.
T Consensus        14 ~G~~i~y~~~~~~~-------~~~~~~vvllHG~~~~~~~w~~~~~~~~la~~gy~via~D~~G~   71 (208)
T d1imja_          14 QGQALFFREALPGS-------GQARFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGL   71 (208)
T ss_dssp             TTEEECEEEEECSS-------SCCSCEEEECCCTTCCHHHHHHHTHHHHHHHTTCEEEEECCTTS
T ss_pred             CCEEEEEEEecCCC-------CCCCCeEEEECCCCCChhHHhhhHHHHHHHHcCCeEEEeecccc
Confidence            89999887777742       33457789999998765443222345789999999999999983

>d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Mycobacterial antigens
domain: Antigen 85a
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.10  E-value=0.00043  Score=65.06  Aligned_cols=74  Identities=15%  Similarity=0.151  Sum_probs=56.3

Q ss_pred             CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccC---hHHHHHHhcCcEEEEeCCCCCCC
Q 008927          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN---LSIQYWTSRGWAFVDVNYGGSTG  537 (548)
Q Consensus       461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~---~~~Q~~asrGyaVl~~NyRGStG  537 (548)
                      .|.+++.|...|.++...|+.|         ++++|+|++.||++.......|.   ...++++++|++|+.+++.++..
T Consensus         9 v~~~~~~s~~~~r~~~~~v~~p---------~~~~Pvl~llhG~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (288)
T d1sfra_           9 VEYLQVPSPSMGRDIKVQFQSG---------GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSF   79 (288)
T ss_dssp             CEEEEEEETTTTEEEEEEEECC---------STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCT
T ss_pred             EEEEEEECCCCCcEEEEEEeCC---------CCCceEEEEcCCCCCCCcchhhhhhccHHHHHHhCCCEEEEeccCCCCC
Confidence            4677887654788999888877         34789999999987655444432   24578899999999999998877


Q ss_pred             CChhhh
Q 008927          538 LSSVPS  543 (548)
Q Consensus       538 yG~~f~  543 (548)
                      ++..+.
T Consensus        80 ~~~~~~   85 (288)
T d1sfra_          80 YSDWYQ   85 (288)
T ss_dssp             TCBCSS
T ss_pred             CccccC
Confidence            776443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.97  E-value=0.01  Score=58.68  Aligned_cols=107  Identities=12%  Similarity=0.020  Sum_probs=63.8

Q ss_pred             EEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccC------C----CCCCce
Q 008927          151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR------Q----DALNST  220 (548)
Q Consensus       151 ~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~------~----~~~~~~  220 (548)
                      ++||++|+..+..+.+|-++|++.  .+..++..-+  .........++|||++++..+....      +    ...+..
T Consensus        80 tpDGr~lfV~d~~~~rVavIDl~t--~k~~~ii~iP--~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~  155 (441)
T d1qnia2          80 RYDGKYLFINDKANTRVARIRLDI--MKTDKITHIP--NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSY  155 (441)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTT--TEEEEEEECT--TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEE
T ss_pred             cCCCCEEEEEcCCCCEEEEEECCC--CcEeeEEecC--CCCCccceEEeccCCEEEEEeccCCcccccCccccccccccc
Confidence            578888877777778999999987  6665543321  0123445689999997544332211      0    001123


Q ss_pred             eEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEec
Q 008927          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWH  264 (548)
Q Consensus       221 ~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~  264 (548)
                      ..+-.+|..+.+.  ..++.-+. ......++|||++++....+
T Consensus       156 ~~~~~iD~~t~~v--~~qI~v~~-~p~~v~~spdGk~a~vt~~n  196 (441)
T d1qnia2         156 TMFTAIDAETMDV--AWQVIVDG-NLDNTDADYTGKYATSTCYN  196 (441)
T ss_dssp             EEEEEEETTTCSE--EEEEEESS-CCCCEEECSSSSEEEEEESC
T ss_pred             ceEEeecCcccee--eEEEecCC-CccceEECCCCCEEEEEecC
Confidence            4455688887762  23333222 34556899999988755543

>d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Putative serine hydrolase Ydr428c
domain: Putative serine hydrolase Ydr428c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.00045  Score=63.55  Aligned_cols=46  Identities=15%  Similarity=0.134  Sum_probs=32.3

Q ss_pred             CCCcEEEEEccCcccc---ccCccChHH----HHHHhcCcEEEEeCCCCCCCC
Q 008927          493 EKPPLLVKSHGGPTSE---ARGILNLSI----QYWTSRGWAFVDVNYGGSTGL  538 (548)
Q Consensus       493 ~~~Pliv~iHGGP~~~---~~~~~~~~~----Q~~asrGyaVl~~NyRGStGy  538 (548)
                      ++.|+||++|||-+..   ....|....    +.++++||.|+.+|||.+.++
T Consensus        29 ~~~~~vv~iHGGg~~~~~~~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~   81 (263)
T d1vkha_          29 NTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEI   81 (263)
T ss_dssp             TCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTS
T ss_pred             CCCcEEEEECCCCccCCCCCcchHHHHHHHHHHHHHhCCeEEEEeccccCcch
Confidence            4569999999995432   122233333    455689999999999998764

>d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase
domain: Enterochelin esterase, catalytic domain
species: Shigella flexneri 2a str. 2457T [TaxId: 198215]

Probab=96.89  E-value=0.00021  Score=65.66  Aligned_cols=74  Identities=14%  Similarity=0.067  Sum_probs=50.3

Q ss_pred             cCCCccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCc----EEEE
Q 008927          454 YKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW----AFVD  529 (548)
Q Consensus       454 ~~~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGy----aVl~  529 (548)
                      ++...++++.++|+|...|.++..+||.|.+  ++   .+++|+||+.|||+...... .....+.++.+|+    +|+.
T Consensus         8 p~~~~~~~~~~~~~S~~lg~~~~~~v~~P~~--~~---~~~~Pvvv~lhG~~~~~~~~-~~~~l~~l~~~~~~~~~i~v~   81 (246)
T d3c8da2           8 PQAPEIPAKEIIWKSERLKNSRRVWIFTTGD--VT---AEERPLAVLLDGEFWAQSMP-VWPVLTSLTHRQQLPPAVYVL   81 (246)
T ss_dssp             CCCCSSCCEEEEEEETTTTEEEEEEEEEC----------CCCCEEEESSHHHHHHTSC-CHHHHHHHHHTTSSCSCEEEE
T ss_pred             CCCCCCCcEEEEEECCCCCCEEEEEEEECCC--CC---CCCCCEEEEeCCcchhccCc-HHHHHHHHHHhCCCCceEEee
Confidence            4455678899999985368899999999965  53   46899999999998765543 3344566777764    4555


Q ss_pred             eCCC
Q 008927          530 VNYG  533 (548)
Q Consensus       530 ~NyR  533 (548)
                      ++..
T Consensus        82 ~~~~   85 (246)
T d3c8da2          82 IDAI   85 (246)
T ss_dssp             ECCC
T ss_pred             cccc
Confidence            5443

>d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Haloperoxidase
domain: Arylesterase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=96.85  E-value=0.0008  Score=61.14  Aligned_cols=56  Identities=20%  Similarity=0.346  Sum_probs=41.6

Q ss_pred             EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       465 ~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +|.+. ||.+|+-..+           |+. |.||++||+|.+..  .|....+.|+++||.|+.+|.||-
T Consensus         2 ~f~~~-dG~~l~y~~~-----------G~g-~~vv~lHG~~~~~~--~~~~~~~~l~~~g~~vi~~D~~G~   57 (271)
T d1va4a_           2 TFVAK-DGTQIYFKDW-----------GSG-KPVLFSHGWLLDAD--MWEYQMEYLSSRGYRTIAFDRRGF   57 (271)
T ss_dssp             EEECT-TSCEEEEEEE-----------SSS-SEEEEECCTTCCGG--GGHHHHHHHHTTTCEEEEECCTTS
T ss_pred             EEEeE-CCeEEEEEEE-----------cCC-CeEEEECCCCCCHH--HHHHHHHHHHhCCCEEEEEecccc
Confidence            46777 9999973322           222 45678999986553  466777899999999999999983

>d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Haloperoxidase
domain: Chloroperoxidase F
species: Pseudomonas fluorescens [TaxId: 294]

Probab=96.80  E-value=0.00098  Score=60.74  Aligned_cols=56  Identities=21%  Similarity=0.412  Sum_probs=42.4

Q ss_pred             EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       465 ~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +|++. ||.+|+-...           |+.+| ||++||.+....  .|...+..|+++||.|+.+|.||-
T Consensus         2 ~f~~~-dG~~i~y~~~-----------G~g~p-vvllHG~~~~~~--~~~~~~~~l~~~~~~vi~~D~~G~   57 (273)
T d1a8sa_           2 TFTTR-DGTQIYYKDW-----------GSGQP-IVFSHGWPLNAD--SWESQMIFLAAQGYRVIAHDRRGH   57 (273)
T ss_dssp             EEECT-TSCEEEEEEE-----------SCSSE-EEEECCTTCCGG--GGHHHHHHHHHTTCEEEEECCTTS
T ss_pred             EEEee-CCcEEEEEEE-----------CCCCe-EEEECCCCCCHH--HHHHHHHHHHhCCCEEEEEechhc
Confidence            68887 9998865432           22334 678999986544  466778899999999999999984

>d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Hypothetical protein TT1662
domain: Hypothetical protein TT1662
species: Thermus thermophilus [TaxId: 274]

Probab=96.67  E-value=0.00012  Score=66.58  Aligned_cols=41  Identities=17%  Similarity=0.229  Sum_probs=32.8

Q ss_pred             CCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (548)
Q Consensus       494 ~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt  536 (548)
                      +.|+||++||......  .|....+.|+++||.|+.+|+||..
T Consensus        23 ~~~~vl~lHG~~~~~~--~~~~~~~~la~~G~~V~~~D~~g~g   63 (238)
T d1ufoa_          23 PKALLLALHGLQGSKE--HILALLPGYAERGFLLLAFDAPRHG   63 (238)
T ss_dssp             CCEEEEEECCTTCCHH--HHHHTSTTTGGGTEEEEECCCTTST
T ss_pred             CCeEEEEeCCCCCCHH--HHHHHHHHHHHCCCEEEEecCCCCC
Confidence            4699999999876543  3445667899999999999999853

>d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase
domain: Feruloyl esterase domain of the cellulosomal xylanase z
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.53  E-value=0.0019  Score=59.17  Aligned_cols=47  Identities=23%  Similarity=0.229  Sum_probs=37.6

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccccc
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR  510 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~  510 (548)
                      ..+.++|.|..+|.+++.+||.|++  |+  ++++||+||++||++.....
T Consensus        21 ~~~~~~~~S~~~g~~~~~~v~lP~~--y~--~~~~~Pvvv~lHG~g~~~~~   67 (255)
T d1jjfa_          21 QVVNISYFSTATNSTRPARVYLPPG--YS--KDKKYSVLYLLHGIGGSEND   67 (255)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEECTT--CC--TTSCBCEEEEECCTTCCTTT
T ss_pred             EEEEEEEEecCCCCEEEEEEEeCCC--CC--CCCCCcEEEEEecCCCChHH
Confidence            4577888875479999999999965  65  37899999999999865543

>d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Proline iminopeptidase-like
domain: Tricorn interacting factor F1
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.52  E-value=0.0014  Score=59.89  Aligned_cols=54  Identities=24%  Similarity=0.255  Sum_probs=39.8

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ||.+|+--.+-..         +..|.||++||+|....  .|...+..++++||.|+.+|.||.
T Consensus        10 ~g~~i~y~~~g~~---------~~~~~iv~lHG~~g~~~--~~~~~~~~~~~~~~~vi~~D~~G~   63 (290)
T d1mtza_          10 NGIYIYYKLCKAP---------EEKAKLMTMHGGPGMSH--DYLLSLRDMTKEGITVLFYDQFGC   63 (290)
T ss_dssp             TTEEEEEEEECCS---------SCSEEEEEECCTTTCCS--GGGGGGGGGGGGTEEEEEECCTTS
T ss_pred             CCEEEEEEEcCCC---------CCCCeEEEECCCCCchH--HHHHHHHHHHHCCCEEEEEeCCCC
Confidence            8999986655431         22488999999996544  244445668889999999999984

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.022  Score=55.04  Aligned_cols=136  Identities=12%  Similarity=0.088  Sum_probs=77.7

Q ss_pred             EEEEeCCCCeEEEEeCCCCCCCce-ecCCCC--CCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc
Q 008927          157 VIFSNYKDQRLYKHSIDSKDSSPL-PITPDY--GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (548)
Q Consensus       157 i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~--~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~  233 (548)
                      ++++...|+.|.+.++..  +++. .+....  .+....+..+.|||||+.|+....+.      ....|.++|+++++.
T Consensus       197 ~lasgs~Dg~i~iwd~~~--~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~------t~~~i~lwd~~~g~~  268 (393)
T d1sq9a_         197 LIATGFNNGTVQISELST--LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN------SFGCITLYETEFGER  268 (393)
T ss_dssp             EEEEECTTSEEEEEETTT--TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET------TEEEEEEEETTTCCE
T ss_pred             EEEEEeCCCcEEEEeecc--cccccccccccccccccceEEEcccccccceeeeecCCC------Ccceeeeccccccee
Confidence            455666788888888875  3332 111110  00012355678999999987765553      124567778888762


Q ss_pred             cCcEEee-------------ecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927          234 QEPKVLV-------------SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (548)
Q Consensus       234 ~~~~~L~-------------~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~  300 (548)
                        ...|.             ...+.+....|||||+.|+=.+.        ...|.+.|++. |+  ....+.+......
T Consensus       269 --~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~--------D~~v~vWd~~~-g~--~~~~l~gH~~~v~  335 (393)
T d1sq9a_         269 --IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW--------DGKLRFWDVKT-KE--RITTLNMHCDDIE  335 (393)
T ss_dssp             --EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET--------TSEEEEEETTT-TE--EEEEEECCGGGCS
T ss_pred             --eeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC--------CCEEEEEECCC-CC--EEEEECCcCCccc
Confidence              12221             12234667899999998873331        35788889984 64  2344544320100


Q ss_pred             cCCcCceECcCCc
Q 008927          301 ESPTEPKWSSKGE  313 (548)
Q Consensus       301 ~~~~~~~wspDG~  313 (548)
                      .....+.|+|+|+
T Consensus       336 ~~~~~~~~~~~~~  348 (393)
T d1sq9a_         336 IEEDILAVDEHGD  348 (393)
T ss_dssp             SGGGCCCBCTTSC
T ss_pred             CCccEEEECCCCC
Confidence            1123467899987

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.48  E-value=0.024  Score=54.73  Aligned_cols=119  Identities=12%  Similarity=0.087  Sum_probs=70.5

Q ss_pred             cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEe-------eecCCceeeeEECCCCCEEEEEEecCC
Q 008927          194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL-------VSGSDFYAFPRMDPRGERMAWIEWHHP  266 (548)
Q Consensus       194 ~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L-------~~~~~~~~~p~~SPDGk~La~~~~~~~  266 (548)
                      ....|+||| .| ++...        ...|.++|+.+++   ....       ....+.+....|||||+.|+-.+.+..
T Consensus       188 ~~v~~s~dg-~l-asgs~--------Dg~i~iwd~~~~~---~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t  254 (393)
T d1sq9a_         188 TSVDISERG-LI-ATGFN--------NGTVQISELSTLR---PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS  254 (393)
T ss_dssp             CEEEECTTS-EE-EEECT--------TSEEEEEETTTTE---EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT
T ss_pred             EEEEECCCC-EE-EEEeC--------CCcEEEEeecccc---cccccccccccccccceEEEcccccccceeeeecCCCC
Confidence            346799998 33 33222        1368888998876   3221       122334667789999999875543321


Q ss_pred             CCCCCCceEEEEEecCCCceeeeEEEc-------------CCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEecc
Q 008927          267 NMPWDKAELWVGYISENGDVYKRVCVA-------------GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES  333 (548)
Q Consensus       267 ~~p~~~~~L~v~~~~~~g~~~~~~~l~-------------~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~  333 (548)
                           ...+.+.|++. |+.  ...+.             +..    ..+....|+|||++++.... ++  .|.++|++
T Consensus       255 -----~~~i~lwd~~~-g~~--~~~l~~~~~~~~~~~~~~gH~----~~V~~l~fspd~~~l~S~s~-D~--~v~vWd~~  319 (393)
T d1sq9a_         255 -----FGCITLYETEF-GER--IGSLSVPTHSSQASLGEFAHS----SWVMSLSFNDSGETLCSAGW-DG--KLRFWDVK  319 (393)
T ss_dssp             -----EEEEEEEETTT-CCE--EEEECBC--------CCBSBS----SCEEEEEECSSSSEEEEEET-TS--EEEEEETT
T ss_pred             -----cceeeeccccc-cee--eeeeccccccccceeeeeccc----CceeeeccCCCCCeeEEECC-CC--EEEEEECC
Confidence                 23466778774 431  12221             111    34677899999996666544 44  56677888


Q ss_pred             CCeeEee
Q 008927          334 NNEVLAI  340 (548)
Q Consensus       334 ~g~~~~l  340 (548)
                      +|+....
T Consensus       320 ~g~~~~~  326 (393)
T d1sq9a_         320 TKERITT  326 (393)
T ss_dssp             TTEEEEE
T ss_pred             CCCEEEE
Confidence            8875443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.40  E-value=0.26  Score=44.97  Aligned_cols=186  Identities=12%  Similarity=0.153  Sum_probs=100.8

Q ss_pred             eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (548)
Q Consensus       150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~  229 (548)
                      +.+++..++.. ..++.|...++..  ++.......   .........++|+++.++....+         ..|.++|+.
T Consensus       167 ~~~~~~~~~~~-~~d~~i~~~d~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d---------~~i~i~d~~  231 (355)
T d1nexb2         167 VSGHGNIVVSG-SYDNTLIVWDVAQ--MKCLYILSG---HTDRIYSTIYDHERKRCISASMD---------TTIRIWDLE  231 (355)
T ss_dssp             EEEETTEEEEE-ETTSCEEEEETTT--TEEEEEECC---CSSCEEEEEEETTTTEEEEEETT---------SCEEEEETT
T ss_pred             cccccceeeee-cccceeeeeeccc--ccceeeeec---cccccccccccccceeeeccccc---------ceEEeeecc
Confidence            34455554443 3566787778765  333222221   12345566799999987765433         357888998


Q ss_pred             CCCccCcEEeeec-CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927          230 GQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (548)
Q Consensus       230 ~g~~~~~~~L~~~-~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w  308 (548)
                      ++.   ......+ ...+....++  ++.|+...        ....|.+.|+.. +.  ....... .    ....-..+
T Consensus       232 ~~~---~~~~~~~h~~~v~~~~~~--~~~l~~~~--------~dg~i~iwd~~~-~~--~~~~~~~-~----~~~~~~~~  290 (355)
T d1nexb2         232 NGE---LMYTLQGHTALVGLLRLS--DKFLVSAA--------ADGSIRGWDAND-YS--RKFSYHH-T----NLSAITTF  290 (355)
T ss_dssp             TCC---EEEEECCCSSCCCEEEEC--SSEEEEEC--------TTSEEEEEETTT-CC--EEEEEEC-T----TCCCCCEE
T ss_pred             ccc---cccccccccccccccccc--cceeeeee--------cccccccccccc-cc--eeccccc-C----CceEEEEE
Confidence            886   3333322 3334444554  56665333        134688889874 32  1111111 1    11222356


Q ss_pred             CcCCcEEEEEeCCCCeeeEEEEeccCCeeEe-ecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927          309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (548)
Q Consensus       309 spDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~-l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d  387 (548)
                      +++++++....  +|  .|.++|+++|+... ....   ...+.+     ...+.     ++.++++...+|...|+++|
T Consensus       291 ~~~~~~l~~g~--d~--~i~vwd~~tg~~~~~~~~~---~~~~V~-----~v~~~-----~~~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         291 YVSDNILVSGS--EN--QFNIYNLRSGKLVHANILK---DADQIW-----SVNFK-----GKTLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             EECSSEEEEEE--TT--EEEEEETTTCCBCCSCTTT---TCSEEE-----EEEEE-----TTEEEEEEESSSCEEEEEEE
T ss_pred             cCCCCEEEEEe--CC--EEEEEECCCCCEEEEEecC---CCCCEE-----EEEEc-----CCeEEEEEECCCcEEEEEEe
Confidence            77877665543  23  57788988887532 1111   111112     23453     34676677778888888877


Q ss_pred             C
Q 008927          388 D  388 (548)
Q Consensus       388 l  388 (548)
                      .
T Consensus       354 f  354 (355)
T d1nexb2         354 F  354 (355)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.37  E-value=0.34  Score=43.91  Aligned_cols=149  Identities=13%  Similarity=0.122  Sum_probs=76.2

Q ss_pred             CEEEEEeC-CCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc
Q 008927          155 DTVIFSNY-KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (548)
Q Consensus       155 ~~i~F~~~-~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~  233 (548)
                      +.+++... ...+|.+++.++  ...+.+....   ..........++|+.++.  +..       ...+++++.++.. 
T Consensus        82 ~~~~~~~~~~~~~i~~~~~~g--~~~~~~~~~~---~~~p~~~avd~~G~i~v~--~~~-------~~~~~~~~~~g~~-  146 (279)
T d1q7fa_          82 GDIIVTERSPTHQIQIYNQYG--QFVRKFGATI---LQHPRGVTVDNKGRIIVV--ECK-------VMRVIIFDQNGNV-  146 (279)
T ss_dssp             TEEEEEECGGGCEEEEECTTS--CEEEEECTTT---CSCEEEEEECTTSCEEEE--ETT-------TTEEEEECTTSCE-
T ss_pred             cccceeccCCccccccccccc--cceeecCCCc---ccccceeccccCCcEEEE--eec-------cceeeEeccCCce-
Confidence            34444433 345788888765  3333332210   112345567888874433  322       2467788776553 


Q ss_pred             cCcEEeeecCC--ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcC
Q 008927          234 QEPKVLVSGSD--FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK  311 (548)
Q Consensus       234 ~~~~~L~~~~~--~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspD  311 (548)
                        ...+.....  ......++++|. |.+..+       ....|++++.+  |+.  ...+.. . ............++
T Consensus       147 --~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~-------~~~~V~~~d~~--G~~--~~~~g~-~-g~~~~P~giavD~~  210 (279)
T d1q7fa_         147 --LHKFGCSKHLEFPNGVVVNDKQE-IFISDN-------RAHCVKVFNYE--GQY--LRQIGG-E-GITNYPIGVGINSN  210 (279)
T ss_dssp             --EEEEECTTTCSSEEEEEECSSSE-EEEEEG-------GGTEEEEEETT--CCE--EEEESC-T-TTSCSEEEEEECTT
T ss_pred             --eecccccccccccceeeecccee-EEeeec-------cccceeeeecC--Cce--eeeecc-c-ccccCCcccccccC
Confidence              333322222  234456788875 433332       24578888865  432  233322 1 10012334578899


Q ss_pred             CcEEEEEeCCCCeeeEEEEeccCCee
Q 008927          312 GELFFVTDRKNGFWNLHKWIESNNEV  337 (548)
Q Consensus       312 G~L~~~sd~~~g~~~Ly~~d~~~g~~  337 (548)
                      |+||+ +|. .+...|.+++. +|+.
T Consensus       211 G~i~V-ad~-~~~~~v~~f~~-~G~~  233 (279)
T d1q7fa_         211 GEILI-ADN-HNNFNLTIFTQ-DGQL  233 (279)
T ss_dssp             CCEEE-EEC-SSSCEEEEECT-TSCE
T ss_pred             CeEEE-EEC-CCCcEEEEECC-CCCE
Confidence            98654 554 33446777886 4554

>d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Haloperoxidase
domain: Bromoperoxidase A1
species: Streptomyces aureofaciens [TaxId: 1894]

Probab=96.36  E-value=0.0025  Score=57.95  Aligned_cols=55  Identities=15%  Similarity=0.164  Sum_probs=40.3

Q ss_pred             eeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       466 ~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ++++ ||.+|+---+           |.. |.||++||.+.+..  .|...++.|+++||.|+.+|+||.
T Consensus         3 ~~t~-dG~~l~y~~~-----------G~g-~~ivlvHG~~~~~~--~~~~~~~~l~~~g~~vi~~D~~G~   57 (274)
T d1a8qa_           3 CTTR-DGVEIFYKDW-----------GQG-RPVVFIHGWPLNGD--AWQDQLKAVVDAGYRGIAHDRRGH   57 (274)
T ss_dssp             EECT-TSCEEEEEEE-----------CSS-SEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEEECCTTS
T ss_pred             EECc-CCCEEEEEEE-----------CCC-CeEEEECCCCCCHH--HHHHHHHHHHHCCCEEEEEeCCCC
Confidence            4676 9988874332           222 45788999986543  456667889999999999999984

>d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase/lipase
domain: Carboxylesterase Est
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.33  E-value=0.0012  Score=58.30  Aligned_cols=41  Identities=17%  Similarity=0.184  Sum_probs=33.1

Q ss_pred             cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCC
Q 008927          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGL  538 (548)
Q Consensus       496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGy  538 (548)
                      +.||++||.+.+..  .|....++|+++||.|+.+|+||...-
T Consensus        12 ~~vvliHG~~~~~~--~~~~l~~~L~~~G~~v~~~D~~G~G~s   52 (242)
T d1tqha_          12 RAVLLLHGFTGNSA--DVRMLGRFLESKGYTCHAPIYKGHGVP   52 (242)
T ss_dssp             CEEEEECCTTCCTH--HHHHHHHHHHHTTCEEEECCCTTSSSC
T ss_pred             CeEEEECCCCCCHH--HHHHHHHHHHHCCCEEEEEeCCCCccc
Confidence            56788999876543  466788999999999999999986543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.37  Score=43.39  Aligned_cols=287  Identities=10%  Similarity=0.015  Sum_probs=131.4

Q ss_pred             CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (548)
Q Consensus        89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L  167 (548)
                      ..+..++++| |+.++-..    .+|...||.+...  .....+... +.-...|.   .-+|+++++.++++...++.+
T Consensus        12 d~I~~l~fsp~~~~L~s~s----~Dg~v~iwd~~~~--~~~~~~~~~-~~h~~~V~---~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_          12 DYISDIKIIPSKSLLLITS----WDGSLTVYKFDIQ--AKNVDLLQS-LRYKHPLL---CCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEE----TTSEEEEEEEETT--TTEEEEEEE-EECSSCEE---EEEEEESSSEEEEEEETTSCE
T ss_pred             CCEEEEEEeCCCCEEEEEE----CCCeEEEEEccCC--CcceEEEEe-cCCCCCEE---EEEEeCCCCCEEEEcccccce
Confidence            3577899999 77665433    2577788876443  122222210 00011111   125777778888887778888


Q ss_pred             EEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC---
Q 008927          168 YKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS---  243 (548)
Q Consensus       168 y~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~---  243 (548)
                      ++.++..  .... .+....   ........+.+++..++....+         ..+..+|+.++... ........   
T Consensus        82 ~~w~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---------~~~~~wd~~~~~~~-~~~~~~~~~~~  146 (342)
T d1yfqa_          82 LKVDLIG--SPSFQALTNNE---ANLGICRICKYGDDKLIAASWD---------GLIEVIDPRNYGDG-VIAVKNLNSNN  146 (342)
T ss_dssp             EEECSSS--SSSEEECBSCC---CCSCEEEEEEETTTEEEEEETT---------SEEEEECHHHHTTB-CEEEEESCSSS
T ss_pred             eeeeccc--ccccccccccc---cccccccccccccccccccccc---------cccceeeccccccc-eeeeccccccc
Confidence            8888875  3332 222221   1111122345566665554332         35666676554310 11111111   


Q ss_pred             --CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcC-CcEEEEEeC
Q 008927          244 --DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK-GELFFVTDR  320 (548)
Q Consensus       244 --~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspD-G~L~~~sd~  320 (548)
                        .......+++++..++....        ...+.+.++................    .......+.+. +..+.....
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~--------d~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~  214 (342)
T d1yfqa_         147 TKVKNKIFTMDTNSSRLIVGMN--------NSQVQWFRLPLCEDDNGTIEESGLK----YQIRDVALLPKEQEGYACSSI  214 (342)
T ss_dssp             SSSCCCEEEEEECSSEEEEEES--------TTEEEEEESSCCTTCCCEEEECSCS----SCEEEEEECSGGGCEEEEEET
T ss_pred             ccceeeeeeeeccCCceeeecC--------CCcEEEEecccCcccceeeeecccc----cceeeeEeecCCCCEEEeecC
Confidence              11123356677777664431        3467777876422211111111111    11222334443 434444444


Q ss_pred             CCCeeeEEEEeccCCee-----EeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce-E
Q 008927          321 KNGFWNLHKWIESNNEV-----LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-S  394 (548)
Q Consensus       321 ~~g~~~Ly~~d~~~g~~-----~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~-~  394 (548)
                       +|...++.++......     ..+....................|.|   +++.| ++...+|.  |++.|+++++. .
T Consensus       215 -dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp---~~~~l-asg~~Dg~--v~vWD~~~~~~l~  287 (342)
T d1yfqa_         215 -DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP---RHKFL-YTAGSDGI--ISCWNLQTRKKIK  287 (342)
T ss_dssp             -TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT---TTCCE-EEEETTSC--EEEEETTTTEEEE
T ss_pred             -CCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecC---CccEE-EEECCCCE--EEEEECCCCcEEE
Confidence             5655555554321110     00100000001111111222345654   55544 55555664  56678887753 3


Q ss_pred             eecCC-CceeEeeeecCCEEEEEEec
Q 008927          395 LLDIP-FTDIDNITLGNDCLFVEGAS  419 (548)
Q Consensus       395 ~l~~~-~~~~~~~s~d~~~l~~~~ss  419 (548)
                      .+... ...+..++++++.+++..+.
T Consensus       288 ~~~~~~~~~~~~~s~~~~~l~~a~sd  313 (342)
T d1yfqa_         288 NFAKFNEDSVVKIACSDNILCLATSD  313 (342)
T ss_dssp             ECCCCSSSEEEEEEECSSEEEEEEEC
T ss_pred             EecCCCCCEEEEEEeCCCEEEEEEcC
Confidence            34322 22344567888877655443

>d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Epoxide hydrolase
domain: Mammalian epoxide hydrolase, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0056  Score=57.10  Aligned_cols=55  Identities=16%  Similarity=0.198  Sum_probs=42.6

Q ss_pred             eeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       466 ~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ++.. ||.+||-.-.           |+ -|.||++||.|.+..  .|...++.|+.+||.|+.+|.||-
T Consensus        16 v~~~-~g~~i~y~~~-----------G~-gp~vlllHG~~~~~~--~~~~~~~~L~~~g~~vi~~D~~G~   70 (322)
T d1zd3a2          16 VTVK-PRVRLHFVEL-----------GS-GPAVCLCHGFPESWY--SWRYQIPALAQAGYRVLAMDMKGY   70 (322)
T ss_dssp             EEEE-TTEEEEEEEE-----------CC-SSEEEEECCTTCCGG--GGTTHHHHHHHTTCEEEEEECTTS
T ss_pred             EEEC-CCCEEEEEEE-----------cC-CCeEEEECCCCCCHH--HHHHHHHHHHHCCCEEEEeccccc
Confidence            4566 8988885432           22 278999999988654  567778999999999999999983

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.11  Score=46.98  Aligned_cols=156  Identities=6%  Similarity=-0.025  Sum_probs=81.1

Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (548)
Q Consensus       149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id  227 (548)
                      .++++++.++.....++.+...++..  .+. ..+...   .......+.|+|||+.|+....+         ..|.++|
T Consensus       125 ~~~~~~~~~~v~~~~~~~v~~~~~~~--~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~g~~d---------g~i~i~d  190 (287)
T d1pgua2         125 AVSLSQNYVAVGLEEGNTIQVFKLSD--LEVSFDLKTP---LRAKPSYISISPSETYIAAGDVM---------GKILLYD  190 (287)
T ss_dssp             EEEECSSEEEEEETTTSCEEEEETTE--EEEEEECSSC---CSSCEEEEEECTTSSEEEEEETT---------SCEEEEE
T ss_pred             eeeccCcceeeeccccceeeeeeccc--cceeeeeeec---cCCceeEEEeccCcccccccccc---------cccccee
Confidence            56777888877765555566666653  222 222221   12245677899999987765333         2578888


Q ss_pred             CCCCCccCcEE--eeecCCceeeeEECCCCCEEEEEEecCCCC--CCCCceEEEEEecCCCceeeeEEEcCCCCCcccCC
Q 008927          228 LNGQNIQEPKV--LVSGSDFYAFPRMDPRGERMAWIEWHHPNM--PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (548)
Q Consensus       228 l~~g~~~~~~~--L~~~~~~~~~p~~SPDGk~La~~~~~~~~~--p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~  303 (548)
                      +.+++   ...  +...........|+|+++.......+..-.  .-....|++.+++..++  ....+.+..    ..+
T Consensus       191 ~~~~~---~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~--~~~~~~~h~----~~V  261 (287)
T d1pgua2         191 LQSRE---VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK--IIKALNAHK----DGV  261 (287)
T ss_dssp             TTTTE---EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC--CEEETTSST----TCE
T ss_pred             ecccc---cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe--EEEEeCCCC----CCe
Confidence            88775   221  111122345567888765432211000000  00124688888874333  123333332    457


Q ss_pred             cCceECcCCcEEEEEeCCCCeeeEEE
Q 008927          304 TEPKWSSKGELFFVTDRKNGFWNLHK  329 (548)
Q Consensus       304 ~~~~wspDG~L~~~sd~~~g~~~Ly~  329 (548)
                      ....|+||++|+-.+ . ++.-.||.
T Consensus       262 ~~v~~~~~~~l~s~g-~-D~~v~iW~  285 (287)
T d1pgua2         262 NNLLWETPSTLVSSG-A-DACIKRWN  285 (287)
T ss_dssp             EEEEEEETTEEEEEE-T-TSCEEEEE
T ss_pred             EEEEECCCCEEEEEE-C-CCeEEEEE
Confidence            888999998644333 3 45444443

>d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Hypothetical protein VC1974
domain: Hypothetical protein VC1974
species: Vibrio cholerae [TaxId: 666]

Probab=95.90  E-value=0.0026  Score=56.76  Aligned_cols=40  Identities=23%  Similarity=0.227  Sum_probs=32.8

Q ss_pred             CCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       494 ~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      .-|+||++||.+.+..  .|...+..|+.+||.|+.+|+||-
T Consensus        15 ~~P~ivllHG~~~~~~--~~~~~~~~L~~~g~~vi~~Dl~G~   54 (264)
T d1r3da_          15 RTPLVVLVHGLLGSGA--DWQPVLSHLARTQCAALTLDLPGH   54 (264)
T ss_dssp             TBCEEEEECCTTCCGG--GGHHHHHHHTTSSCEEEEECCTTC
T ss_pred             CCCeEEEeCCCCCCHH--HHHHHHHHHHhCCCEEEEEecccc
Confidence            3478999999986543  467778889999999999999973

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.68  E-value=0.72  Score=41.69  Aligned_cols=169  Identities=11%  Similarity=0.081  Sum_probs=88.0

Q ss_pred             EEEEEECCCCCccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927          222 EIVAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (548)
Q Consensus       222 ~l~~idl~~g~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~  300 (548)
                      .|...|+.+++   ...... .........++|+++.++....        ...|.+.++.. +.  ....+.+..    
T Consensus       182 ~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------d~~i~i~d~~~-~~--~~~~~~~h~----  243 (355)
T d1nexb2         182 TLIVWDVAQMK---CLYILSGHTDRIYSTIYDHERKRCISASM--------DTTIRIWDLEN-GE--LMYTLQGHT----  243 (355)
T ss_dssp             CEEEEETTTTE---EEEEECCCSSCEEEEEEETTTTEEEEEET--------TSCEEEEETTT-CC--EEEEECCCS----
T ss_pred             eeeeeeccccc---ceeeeeccccccccccccccceeeecccc--------cceEEeeeccc-cc--ccccccccc----
Confidence            57778888775   333322 2333556789999998875542        34688888874 43  233344433    


Q ss_pred             cCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCe
Q 008927          301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR  380 (548)
Q Consensus       301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~  380 (548)
                      ..+....|+  +++++.... +|  .|..+|+.+++.+..... ....      ..  ..+.    .++.+++... ++ 
T Consensus       244 ~~v~~~~~~--~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~-~~~~------~~--~~~~----~~~~~l~~g~-d~-  303 (355)
T d1nexb2         244 ALVGLLRLS--DKFLVSAAA-DG--SIRGWDANDYSRKFSYHH-TNLS------AI--TTFY----VSDNILVSGS-EN-  303 (355)
T ss_dssp             SCCCEEEEC--SSEEEEECT-TS--EEEEEETTTCCEEEEEEC-TTCC------CC--CEEE----ECSSEEEEEE-TT-
T ss_pred             ccccccccc--cceeeeeec-cc--ccccccccccceeccccc-CCce------EE--EEEc----CCCCEEEEEe-CC-
Confidence            445666665  455455444 44  466677766543221111 1100      00  1122    3444554443 55 


Q ss_pred             EEEEEEECCCCceEe--ecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEE
Q 008927          381 SYLGILDDFGHSLSL--LDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVT  430 (548)
Q Consensus       381 ~~L~~~dl~~g~~~~--l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d  430 (548)
                       .|.++|+++|+...  +......+..+..+++.+++.++. +..--|+++|
T Consensus       304 -~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~-dg~~~l~~~d  353 (355)
T d1nexb2         304 -QFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEK-DGQSFLEILD  353 (355)
T ss_dssp             -EEEEEETTTCCBCCSCTTTTCSEEEEEEEETTEEEEEEES-SSCEEEEEEE
T ss_pred             -EEEEEECCCCCEEEEEecCCCCCEEEEEEcCCeEEEEEEC-CCcEEEEEEe
Confidence             57778998887532  222233455554455666554443 3223455555

>d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Haloalkane dehalogenase
domain: Haloalkane dehalogenase
species: Xanthobacter autotrophicus [TaxId: 280]

Probab=95.62  E-value=0.012  Score=54.56  Aligned_cols=54  Identities=19%  Similarity=0.247  Sum_probs=41.1

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ||..+|-+=.-+         +...|+||++||.|....  .|...+..|+.+||.|+.+|.||-
T Consensus        32 ~g~~~~y~~~G~---------~~~~p~llllHG~~~~~~--~~~~~~~~l~~~~~~vi~~Dl~G~   85 (310)
T d1b6ga_          32 PGLRAHYLDEGN---------SDAEDVFLCLHGEPTWSY--LYRKMIPVFAESGARVIAPDFFGF   85 (310)
T ss_dssp             TTCEEEEEEEEC---------TTCSCEEEECCCTTCCGG--GGTTTHHHHHHTTCEEEEECCTTS
T ss_pred             CCEEEEEEEecC---------CCCCCEEEEECCCCCchH--HHHHHHHHhhccCceEEEeeecCc
Confidence            898887433322         224599999999987654  466677899999999999999973

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.55  E-value=0.75  Score=40.96  Aligned_cols=197  Identities=16%  Similarity=0.111  Sum_probs=93.4

Q ss_pred             cCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccC-CCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEEE
Q 008927           91 LGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT-PKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK  169 (548)
Q Consensus        91 ~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt-~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~  169 (548)
                      ...+++++.+.+|+++...  .+  .+++...++  ..+.+. ...+...      -+-++.++ +.|++.+ ..+.+.+
T Consensus        16 P~~vavd~dG~i~v~~~~~--~~--~i~~~~~~~--~~~~~~~~~~~~~p------~gvav~~~-g~i~v~d-~~~~~i~   81 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGM--YG--RVVKLATGS--TGTTVLPFNGLYQP------QGLAVDGA-GTVYVTD-FNNRVVT   81 (260)
T ss_dssp             EEEEEECTTCCEEEEECSS--SC--EEEEEC------CEEECCCCSCCSC------CCEEECTT-CCEEEEE-TTTEEEE
T ss_pred             CCEEEEcCCCCEEEEEcCC--CC--EEEEEcCCC--ceEEEeccCCccCc------eEEEEcCC-CCEEEee-eeeceee
Confidence            4566888755677766321  23  355554432  222222 2222111      11223222 3465554 4444444


Q ss_pred             EeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee-cCCceee
Q 008927          170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSDFYAF  248 (548)
Q Consensus       170 ~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~-~~~~~~~  248 (548)
                      +..++  .....+...   ......+..++++|+. ++. ...       ...++.++..+..   ...... +......
T Consensus        82 ~~~~~--~~~~~~~~~---~~~~p~~iavd~~g~i-~v~-d~~-------~~~~~~~~~~~~~---~~~~~~~~~~~p~~  144 (260)
T d1rwia_          82 LAAGS--NNQTVLPFD---GLNYPEGLAVDTQGAV-YVA-DRG-------NNRVVKLAAGSKT---QTVLPFTGLNDPDG  144 (260)
T ss_dssp             ECTTC--SCCEECCCC---SCCSEEEEEECTTCCE-EEE-EGG-------GTEEEEECTTCSS---CEECCCCSCCSCCE
T ss_pred             eeeec--cceeeeeee---eeeeccccccccccee-Eee-ccc-------cccccccccccce---eeeeeecccCCcce
Confidence            54443  222322221   0112345678999874 332 321       2468888877765   333321 2222345


Q ss_pred             eEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEE
Q 008927          249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH  328 (548)
Q Consensus       249 p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly  328 (548)
                      ..++|+|+ |.+..+       ....|+.++.+...    ...+.... -  .....+.+.++|+||+ +|...  ..|+
T Consensus       145 i~~~~~g~-~~v~~~-------~~~~i~~~d~~~~~----~~~~~~~~-~--~~p~gi~~d~~g~l~v-sd~~~--~~i~  206 (260)
T d1rwia_         145 VAVDNSGN-VYVTDT-------DNNRVVKLEAESNN----QVVLPFTD-I--TAPWGIAVDEAGTVYV-TEHNT--NQVV  206 (260)
T ss_dssp             EEECTTCC-EEEEEG-------GGTEEEEECTTTCC----EEECCCSS-C--CSEEEEEECTTCCEEE-EETTT--TEEE
T ss_pred             eeecCCCC-Eeeecc-------ccccccccccccce----eeeeeccc-c--CCCccceeeeeeeeee-eecCC--CEEE
Confidence            57889997 433332       24578888766322    22222111 0  2234567888887754 44413  3588


Q ss_pred             EEeccCCe
Q 008927          329 KWIESNNE  336 (548)
Q Consensus       329 ~~d~~~g~  336 (548)
                      +++.+++.
T Consensus       207 ~~~~~~~~  214 (260)
T d1rwia_         207 KLLAGSTT  214 (260)
T ss_dssp             EECTTCSC
T ss_pred             EEeCCCCe
Confidence            88875543

>d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Proline iminopeptidase-like
domain: Proline aminopeptidase
species: Serratia marcescens [TaxId: 615]

Probab=95.44  E-value=0.009  Score=54.65  Aligned_cols=60  Identities=17%  Similarity=0.154  Sum_probs=41.0

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +.-.+++. ||.+|+-.-+-+.+       +   |.||++||+|.+...  |..... +.++||.|+.+|.||-
T Consensus        12 ~~~~v~~~-dG~~i~y~~~G~~~-------g---~pvvllHG~~~~~~~--w~~~~~-~l~~~~~vi~~D~rG~   71 (313)
T d1wm1a_          12 DSGWLDTG-DGHRIYWELSGNPN-------G---KPAVFIHGGPGGGIS--PHHRQL-FDPERYKVLLFDQRGC   71 (313)
T ss_dssp             EEEEEECS-SSCEEEEEEEECTT-------S---EEEEEECCTTTCCCC--GGGGGG-SCTTTEEEEEECCTTS
T ss_pred             cCCEEEeC-CCcEEEEEEecCCC-------C---CeEEEECCCCCcccc--hHHHHH-HhhcCCEEEEEeCCCc
Confidence            44456776 99999876654311       2   557888999976543  333333 4467999999999974

>d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Fungal lipases
domain: Type-B carboxylesterase/lipase
species: Candida cylindracea, cholesterol esterase [TaxId: 44322]

Probab=95.43  E-value=0.0054  Score=62.81  Aligned_cols=56  Identities=16%  Similarity=0.134  Sum_probs=38.4

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccc-cCccChH----HHHHHhcCcEEEEeCCCC
Q 008927          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILNLS----IQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~-~~~~~~~----~Q~~asrGyaVl~~NyRG  534 (548)
                      ++--+|.|++..    +++++|+||+||||-.... ...|+..    ..++++++.+|+.+|||-
T Consensus        98 L~LnI~~P~~~~----~~~~~PVlv~ihGG~f~~g~~~~~~~~~~~~~~~~~~~~vIvVt~nYRL  158 (534)
T d1llfa_          98 LTINVVRPPGTK----AGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRV  158 (534)
T ss_dssp             CEEEEEECTTCC----TTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCC
T ss_pred             CEEEEEECCCCC----CCCCCeEEEEECCCccccCCCCCCCchhccchhhhccCCeEEEEeecCC
Confidence            566677786422    3678999999999975332 2234332    234567899999999994

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.34  E-value=0.21  Score=48.26  Aligned_cols=106  Identities=10%  Similarity=-0.016  Sum_probs=59.3

Q ss_pred             ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCE--EEEEEecc----C-----CCCCCcee
Q 008927          153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR--YVTVREDR----R-----QDALNSTT  221 (548)
Q Consensus       153 ~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~--i~~v~~~~----~-----~~~~~~~~  221 (548)
                      ||++|+-.+..+.+|-+++++.  -+..+|...+.  ......+..+++++.  |++..+..    .     +.+.+.+.
T Consensus        98 DGrylFVNDkan~RVAvIdl~~--fkt~kIi~iPn--~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDV--MKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTT--TEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred             ceeEEEEEcCCCceEEEEECcc--eeeeEEEecCC--CCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence            4444544455578999999987  66666654421  112333455555554  33333321    0     12233456


Q ss_pred             EEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecC
Q 008927          222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHH  265 (548)
Q Consensus       222 ~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~  265 (548)
                      .+..||.++.+.  ..++.-+ .......+|||||++++.+.+.
T Consensus       174 ~~t~ID~~tm~V--~~QV~V~-g~ld~~~~s~dGK~af~TsyNS  214 (459)
T d1fwxa2         174 VFTAVDADKWEV--AWQVLVS-GNLDNCDADYEGKWAFSTSYNS  214 (459)
T ss_dssp             EEEEEETTTTEE--EEEEEES-SCCCCEEECSSSSEEEEEESCT
T ss_pred             EEEEEecCCceE--EEEeeeC-CChhccccCCCCCEEEEEeccc
Confidence            677899998762  2233222 2344567999999887766543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.30  E-value=0.9  Score=40.39  Aligned_cols=141  Identities=16%  Similarity=0.105  Sum_probs=72.5

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccC
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~  235 (548)
                      .|++.+....++++++..+  ..........   .....++.++|+|+ + |+....       ...|++++.++..   
T Consensus       110 ~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~---~~~p~~i~~~~~g~-~-~v~~~~-------~~~i~~~d~~~~~---  172 (260)
T d1rwia_         110 AVYVADRGNNRVVKLAAGS--KTQTVLPFTG---LNDPDGVAVDNSGN-V-YVTDTD-------NNRVVKLEAESNN---  172 (260)
T ss_dssp             CEEEEEGGGTEEEEECTTC--SSCEECCCCS---CCSCCEEEECTTCC-E-EEEEGG-------GTEEEEECTTTCC---
T ss_pred             eeEeecccccccccccccc--ceeeeeeecc---cCCcceeeecCCCC-E-eeeccc-------cccccccccccce---
Confidence            5777765566888888775  3333322210   11234567889987 3 333332       2479999988765   


Q ss_pred             cEEeeec-CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcE
Q 008927          236 PKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL  314 (548)
Q Consensus       236 ~~~L~~~-~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L  314 (548)
                      ...+... ...-...++++||+ | |++..      ....|+.++.+  +.  ....+.... -  .......+++||.|
T Consensus       173 ~~~~~~~~~~~p~gi~~d~~g~-l-~vsd~------~~~~i~~~~~~--~~--~~~~~~~~~-~--~~P~~i~~d~~g~l  237 (260)
T d1rwia_         173 QVVLPFTDITAPWGIAVDEAGT-V-YVTEH------NTNQVVKLLAG--ST--TSTVLPFTG-L--NTPLAVAVDSDRTV  237 (260)
T ss_dssp             EEECCCSSCCSEEEEEECTTCC-E-EEEET------TTTEEEEECTT--CS--CCEECCCCS-C--CCEEEEEECTTCCE
T ss_pred             eeeeeccccCCCccceeeeeee-e-eeeec------CCCEEEEEeCC--CC--eEEEEccCC-C--CCeEEEEEeCCCCE
Confidence            3333311 12234457889986 4 44421      24567777654  22  122222211 0  12234566777765


Q ss_pred             EEEEeCCCCeeeEEEEe
Q 008927          315 FFVTDRKNGFWNLHKWI  331 (548)
Q Consensus       315 ~~~sd~~~g~~~Ly~~d  331 (548)
                      | ++|.  +...|.+++
T Consensus       238 ~-vad~--~~~rI~~i~  251 (260)
T d1rwia_         238 Y-VADR--GNDRVVKLT  251 (260)
T ss_dssp             E-EEEG--GGTEEEEEC
T ss_pred             E-EEEC--CCCEEEEEe
Confidence            4 4444  122455544

>d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Aclacinomycin methylesterase RdmC
domain: Aclacinomycin methylesterase RdmC
species: Streptomyces purpurascens [TaxId: 1924]

Probab=95.28  E-value=0.021  Score=52.26  Aligned_cols=52  Identities=12%  Similarity=0.068  Sum_probs=38.4

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccC-hHHHHHHhcCcEEEEeCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~-~~~Q~~asrGyaVl~~NyRG  534 (548)
                      +|.+||-.-+-+          ...|.||++||.|.+..  .|. ...+.|+++||-|+.+|.||
T Consensus         8 g~~~i~y~~~G~----------~~~p~vvl~HG~~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G   60 (297)
T d1q0ra_           8 GDVELWSDDFGD----------PADPALLLVMGGNLSAL--GWPDEFARRLADGGLHVIRYDHRD   60 (297)
T ss_dssp             TTEEEEEEEESC----------TTSCEEEEECCTTCCGG--GSCHHHHHHHHTTTCEEEEECCTT
T ss_pred             CCEEEEEEEecC----------CCCCEEEEECCCCcChh--HHHHHHHHHHHhCCCEEEEEeCCC
Confidence            677777655532          12378999999987654  343 34678999999999999999

>d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Epoxide hydrolase
domain: Bacterial epoxide hydrolase
species: Aspergillus niger [TaxId: 5061]

Probab=95.24  E-value=0.013  Score=57.21  Aligned_cols=54  Identities=17%  Similarity=0.084  Sum_probs=44.2

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcC------cEEEEeCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG------WAFVDVNYGG  534 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrG------yaVl~~NyRG  534 (548)
                      ||.+||-+-....+        +..|.||++||=|.+..  .|...+..|++.|      |-|+.|+.||
T Consensus        90 ~G~~iHf~h~~~~~--------~~~~pLlLlHG~P~s~~--~w~~vi~~La~~g~~~~~~f~VIaPDLpG  149 (394)
T d1qo7a_          90 EGLTIHFAALFSER--------EDAVPIALLHGWPGSFV--EFYPILQLFREEYTPETLPFHLVVPSLPG  149 (394)
T ss_dssp             TTEEEEEEEECCSC--------TTCEEEEEECCSSCCGG--GGHHHHHHHHHHCCTTTCCEEEEEECCTT
T ss_pred             CCEEEEEEEEeccC--------CCCCEEEEeccccccHH--HHHHHHHhhccccCCcccceeeecccccc
Confidence            89999987666532        34577888999998775  4677888999998      9999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.22  Score=45.11  Aligned_cols=150  Identities=11%  Similarity=-0.008  Sum_probs=78.9

Q ss_pred             eEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (548)
Q Consensus       150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl  228 (548)
                      +.+++..|+ +...++.|.+.++..  ++.. .+...    .....  .++++++.|+....+         ..|.++|+
T Consensus       183 ~~~~~~~l~-s~~~dg~i~~~d~~~--~~~~~~~~~~----~~~v~--~~~~~~~~l~s~s~d---------~~i~iwd~  244 (342)
T d2ovrb2         183 LQFDGIHVV-SGSLDTSIRVWDVET--GNCIHTLTGH----QSLTS--GMELKDNILVSGNAD---------STVKIWDI  244 (342)
T ss_dssp             EEECSSEEE-EEETTSCEEEEETTT--CCEEEEECCC----CSCEE--EEEEETTEEEEEETT---------SCEEEEET
T ss_pred             ccCCCCEEE-EEeCCCeEEEeeccc--ceeeeEeccc----cccee--EEecCCCEEEEEcCC---------CEEEEEec
Confidence            444555544 444577888888876  4433 23222    11222  345566766554333         35888898


Q ss_pred             CCCCccCcEEeeecC-C-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcC-CCCCcccCCcC
Q 008927          229 NGQNIQEPKVLVSGS-D-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-FDPTIVESPTE  305 (548)
Q Consensus       229 ~~g~~~~~~~L~~~~-~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~-~~~~~~~~~~~  305 (548)
                      ...+   ........ . ......++++++.|+-.+ .       ...|.+.|+.. |+.  .+.+.. ........+..
T Consensus       245 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~s-~-------Dg~i~iwd~~t-g~~--i~~~~~~~~~~~~~~v~~  310 (342)
T d2ovrb2         245 KTGQ---CLQTLQGPNKHQSAVTCLQFNKNFVITSS-D-------DGTVKLWDLKT-GEF--IRNLVTLESGGSGGVVWR  310 (342)
T ss_dssp             TTCC---EEEEECSTTSCSSCEEEEEECSSEEEEEE-T-------TSEEEEEETTT-CCE--EEEEEECTTGGGTCEEEE
T ss_pred             cccc---ccccccccceeeeceeecccCCCeeEEEc-C-------CCEEEEEECCC-CCE--EEEEecccCCCCCCCEEE
Confidence            8876   33333221 1 122234555677666333 1       35789999984 542  222211 10000034677


Q ss_pred             ceECcCCcEEEEEeCCCC--eeeEEEEec
Q 008927          306 PKWSSKGELFFVTDRKNG--FWNLHKWIE  332 (548)
Q Consensus       306 ~~wspDG~L~~~sd~~~g--~~~Ly~~d~  332 (548)
                      ..|+|||.+++.... +|  ...|+.+|.
T Consensus       311 v~~s~~~~~la~g~~-dGt~~~~l~~~Df  338 (342)
T d2ovrb2         311 IRASNTKLVCAVGSR-NGTEETKLLVLDF  338 (342)
T ss_dssp             EEECSSEEEEEEECS-SSSSCCEEEEEEC
T ss_pred             EEECCCCCEEEEEeC-CCCCeeEEEEEeC
Confidence            899999986555544 44  345777765

>d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Haloperoxidase
domain: Bromoperoxidase A2
species: Streptomyces aureofaciens [TaxId: 1894]

Probab=95.05  E-value=0.02  Score=51.51  Aligned_cols=37  Identities=19%  Similarity=0.195  Sum_probs=30.4

Q ss_pred             cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCC
Q 008927          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      |.||++||.|.+..  .|...+..|+++||.|+.+|.||
T Consensus        24 ~~ivllHG~~~~~~--~~~~~~~~l~~~g~~vi~~D~~G   60 (277)
T d1brta_          24 QPVVLIHGFPLSGH--SWERQSAALLDAGYRVITYDRRG   60 (277)
T ss_dssp             SEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEEECCTT
T ss_pred             CeEEEECCCCCCHH--HHHHHHHHHHhCCCEEEEEeCCC
Confidence            55788999987654  35666788999999999999997

>d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Haloalkane dehalogenase
domain: Haloalkane dehalogenase
species: Rhodococcus sp. [TaxId: 1831]

Probab=95.03  E-value=0.015  Score=52.95  Aligned_cols=52  Identities=17%  Similarity=0.148  Sum_probs=38.7

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ||.+||-.-+-|.+          -|.||++||.|.+..  .|...++.|+ .||.|+.+|.||-
T Consensus        15 ~g~~i~y~~~G~~~----------~p~lvllHG~~~~~~--~~~~~~~~L~-~~~~vi~~d~~G~   66 (291)
T d1bn7a_          15 LGERMHYVDVGPRD----------GTPVLFLHGNPTSSY--LWRNIIPHVA-PSHRCIAPDLIGM   66 (291)
T ss_dssp             TTEEEEEEEESCSS----------SSCEEEECCTTCCGG--GGTTTHHHHT-TTSCEEEECCTTS
T ss_pred             CCEEEEEEEeCCCC----------CCeEEEECCCCCCHH--HHHHHHHHHh-cCCEEEEEeCCCC
Confidence            89999876665421          256888999987654  4566677774 5999999999984

>d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetylcholinesterase-like
domain: Mammalian carboxylesterase (liver carboxylesterase I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.011  Score=60.16  Aligned_cols=56  Identities=18%  Similarity=0.264  Sum_probs=37.7

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCC
Q 008927          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      ++--+|.|++..    ++++.|+||+||||=.............+.+.++.+|+.+|||=
T Consensus        97 L~LnI~~P~~~~----~~~~lPV~v~ihGG~~~~gs~~~~~~~~~~~~~~vIvVt~nYRL  152 (532)
T d2h7ca1          97 LYLNIYTPADLT----KKNRLPVMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRL  152 (532)
T ss_dssp             CEEEEEECSCTT----SCCCEEEEEEECCSTTTSCCSTTSCCHHHHHHHTCEEEEECCCC
T ss_pred             CEEEEEECCCCC----CCCCcEEEEEEeCCcccccccccCCchhhhhcCceEEEEEeecc
Confidence            555667786532    35678999999999543322221122346688999999999994

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.93  Score=40.62  Aligned_cols=153  Identities=14%  Similarity=0.141  Sum_probs=78.5

Q ss_pred             eeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeec-CCceeeeEECCCCCEEEEEEecCCCCCCCCceE
Q 008927          197 IFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL  275 (548)
Q Consensus       197 ~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~-~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L  275 (548)
                      .++++++.|+....+         ..|.++|+..++   ......+ .....  .++++++.|+-.. .       ...|
T Consensus       182 ~~~~~~~~l~s~~~d---------g~i~~~d~~~~~---~~~~~~~~~~~v~--~~~~~~~~l~s~s-~-------d~~i  239 (342)
T d2ovrb2         182 SLQFDGIHVVSGSLD---------TSIRVWDVETGN---CIHTLTGHQSLTS--GMELKDNILVSGN-A-------DSTV  239 (342)
T ss_dssp             EEEECSSEEEEEETT---------SCEEEEETTTCC---EEEEECCCCSCEE--EEEEETTEEEEEE-T-------TSCE
T ss_pred             cccCCCCEEEEEeCC---------CeEEEeecccce---eeeEeccccccee--EEecCCCEEEEEc-C-------CCEE
Confidence            456688877665433         357888998876   3333222 22333  4566677776433 1       3468


Q ss_pred             EEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCee-Eeecccc-cccCCCccc
Q 008927          276 WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV-LAIYSLD-AEFSRPLWV  353 (548)
Q Consensus       276 ~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~-~~l~~~~-~d~~~p~w~  353 (548)
                      ++.++.. .+  ....+.... .  .......+++++++++.... +|  .|..+|+.+|+. +.+.... .....+.| 
T Consensus       240 ~iwd~~~-~~--~~~~~~~~~-~--~~~~~~~~~~~~~~~~s~s~-Dg--~i~iwd~~tg~~i~~~~~~~~~~~~~~v~-  309 (342)
T d2ovrb2         240 KIWDIKT-GQ--CLQTLQGPN-K--HQSAVTCLQFNKNFVITSSD-DG--TVKLWDLKTGEFIRNLVTLESGGSGGVVW-  309 (342)
T ss_dssp             EEEETTT-CC--EEEEECSTT-S--CSSCEEEEEECSSEEEEEET-TS--EEEEEETTTCCEEEEEEECTTGGGTCEEE-
T ss_pred             EEEeccc-cc--ccccccccc-e--eeeceeecccCCCeeEEEcC-CC--EEEEEECCCCCEEEEEecccCCCCCCCEE-
Confidence            8888874 32  223333322 1  11222334556665555444 44  577778888775 3332111 11111122 


Q ss_pred             ccCcceeeeeecCCCCEEEEEEEeCCe--EEEEEEECC
Q 008927          354 FGINSYEIIQSHGEKNLIACSYRQNGR--SYLGILDDF  389 (548)
Q Consensus       354 ~~~~~~~~~~~~~d~~~l~~~~~~~g~--~~L~~~dl~  389 (548)
                          ...+.    +++.++++...+|.  ..|+++|.+
T Consensus       310 ----~v~~s----~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         310 ----RIRAS----NTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             ----EEEEC----SSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             ----EEEEC----CCCCEEEEEeCCCCCeeEEEEEeCC
Confidence                23454    34455555555653  467777764

>d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetylcholinesterase-like
domain: Thermophilic para-nitrobenzyl esterase (PNB esterase)
species: Bacillus subtilis [TaxId: 1423]

Probab=94.80  E-value=0.0081  Score=60.48  Aligned_cols=54  Identities=22%  Similarity=0.304  Sum_probs=36.5

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCc-cChHHHHHH-hcCcEEEEeCCCC
Q 008927          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWT-SRGWAFVDVNYGG  534 (548)
Q Consensus       475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~-~~~~~Q~~a-srGyaVl~~NyRG  534 (548)
                      ++--+|.|++      +++++|+||+||||-....... +....+.++ ..+.+|+.+|||=
T Consensus        82 L~lni~~P~~------~~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vVvV~~nYRl  137 (483)
T d1qe3a_          82 LYVNVFAPDT------PSQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRL  137 (483)
T ss_dssp             CEEEEEEECS------SCCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCC
T ss_pred             CEEEEEECCC------CCCCCceEEEEeecccccCCccccccccccccccCceEEEeecccc
Confidence            6677777864      2568999999999965432222 222234455 4579999999994

>d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Haloperoxidase
domain: Gamma-lactamase
species: Aureobacterium sp. [TaxId: 51671]

Probab=94.68  E-value=0.021  Score=51.54  Aligned_cols=59  Identities=17%  Similarity=0.197  Sum_probs=40.4

Q ss_pred             EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       464 i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      |++.+. ++..|.=++.. .        |.. |.||++||.+.+..  .|...++.++++||.|+.+|.||-
T Consensus         3 ~~~~~~-~~~~v~i~y~~-~--------G~g-~~illlHG~~~~~~--~~~~~~~~l~~~~~~vi~~D~~G~   61 (279)
T d1hkha_           3 ITVGNE-NSTPIELYYED-Q--------GSG-QPVVLIHGYPLDGH--SWERQTRELLAQGYRVITYDRRGF   61 (279)
T ss_dssp             EEEEEE-TTEEEEEEEEE-E--------SSS-EEEEEECCTTCCGG--GGHHHHHHHHHTTEEEEEECCTTS
T ss_pred             EEEecC-CCCeEEEEEEE-E--------ccC-CeEEEECCCCCCHH--HHHHHHHHHHHCCCEEEEEechhh
Confidence            556665 66655433321 1        222 56788999987654  456667788999999999999984

>d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Proline iminopeptidase-like
domain: Proline iminopeptidase
species: Xanthomonas campestris, pv. citri [TaxId: 339]

Probab=94.51  E-value=0.022  Score=52.99  Aligned_cols=59  Identities=14%  Similarity=0.209  Sum_probs=39.0

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      +.-.++.. ||.+||--.+=..          +-|.||++||+|.+...+  .. ...+.+.||-|+.+|.||
T Consensus        12 ~~~~i~~~-dg~~i~y~~~G~~----------~g~pvvllHG~~g~~~~~--~~-~~~~l~~~~~Vi~~D~rG   70 (313)
T d1azwa_          12 QQGSLKVD-DRHTLYFEQCGNP----------HGKPVVMLHGGPGGGCND--KM-RRFHDPAKYRIVLFDQRG   70 (313)
T ss_dssp             EEEEEECS-SSCEEEEEEEECT----------TSEEEEEECSTTTTCCCG--GG-GGGSCTTTEEEEEECCTT
T ss_pred             CCCEEEeC-CCcEEEEEEecCC----------CCCEEEEECCCCCCccch--HH-HhHHhhcCCEEEEEeccc
Confidence            55556776 9988876655221          125577899999654322  21 233457899999999999

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.12  E-value=0.94  Score=40.14  Aligned_cols=111  Identities=11%  Similarity=-0.072  Sum_probs=61.2

Q ss_pred             eeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceE
Q 008927          196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL  275 (548)
Q Consensus       196 ~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L  275 (548)
                      ..+++++..++.. .+         ..+..++..+++   .........  ..-.++|+++.++....+       ...+
T Consensus        86 ~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~v~~~~-------~~~v  143 (287)
T d1pgua2          86 ASANNDGFTAVLT-ND---------DDLLILQSFTGD---IIKSVRLNS--PGSAVSLSQNYVAVGLEE-------GNTI  143 (287)
T ss_dssp             EEECSSSEEEEEE-TT---------SEEEEEETTTCC---EEEEEECSS--CEEEEEECSSEEEEEETT-------TSCE
T ss_pred             eeeccCCceEEEe-ec---------ccceeeecccee---eeeeccccc--eeeeeeccCcceeeeccc-------ccee
Confidence            4567777655442 22         357788888776   333222221  223578889888754421       2346


Q ss_pred             EEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCee
Q 008927          276 WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV  337 (548)
Q Consensus       276 ~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~  337 (548)
                      .+.++.. ..  ....+.... .  ..+....|+|||+++++.+. +|  .|..+|..+++.
T Consensus       144 ~~~~~~~-~~--~~~~~~~~~-~--~~v~~~~~s~~~~~l~~g~~-dg--~i~i~d~~~~~~  196 (287)
T d1pgua2         144 QVFKLSD-LE--VSFDLKTPL-R--AKPSYISISPSETYIAAGDV-MG--KILLYDLQSREV  196 (287)
T ss_dssp             EEEETTE-EE--EEEECSSCC-S--SCEEEEEECTTSSEEEEEET-TS--CEEEEETTTTEE
T ss_pred             eeeeccc-cc--eeeeeeecc-C--CceeEEEeccCccccccccc-cc--cccceeeccccc
Confidence            7777652 21  112222111 1  34667899999996566554 44  456667766654

>d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carbon-carbon bond hydrolase
domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD)
species: Rhodococcus sp., strain rha1 [TaxId: 1831]

Probab=94.07  E-value=0.032  Score=50.62  Aligned_cols=58  Identities=17%  Similarity=0.160  Sum_probs=39.8

Q ss_pred             EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccc-cCccChHHHHHHhcCcEEEEeCCCC
Q 008927          464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       464 i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~-~~~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      .++++  ++.++|.+..-+.          .-|+||++||.+.... ...|...+..|+ +||.|+.+|.||
T Consensus         7 ~~~~~--~~~~~h~~~~G~~----------~~p~ivllHG~~~~~~~~~~~~~~~~~L~-~~~~vi~~D~~G   65 (281)
T d1c4xa_           7 KRFPS--GTLASHALVAGDP----------QSPAVVLLHGAGPGAHAASNWRPIIPDLA-ENFFVVAPDLIG   65 (281)
T ss_dssp             EEECC--TTSCEEEEEESCT----------TSCEEEEECCCSTTCCHHHHHGGGHHHHH-TTSEEEEECCTT
T ss_pred             EEEcc--CCEEEEEEEEecC----------CCCEEEEECCCCCCCcHHHHHHHHHHHHh-CCCEEEEEeCCC
Confidence            34554  5678887775431          2388999999775443 234556666675 599999999998

>d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carbon-carbon bond hydrolase
domain: Meta cleavage compound hydrolase CarC
species: Janthinobacterium sp. J3 [TaxId: 213804]

Probab=93.95  E-value=0.033  Score=49.83  Aligned_cols=52  Identities=15%  Similarity=0.222  Sum_probs=35.3

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccc-cCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~-~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ||.++|-.   -.        |+. |.||++||++.... ...|.....+| ++||.|+.+|.||-
T Consensus        10 dg~~l~y~---~~--------G~g-~~vvllHG~~~~~~~~~~~~~~~~~l-~~~~~v~~~D~~G~   62 (268)
T d1j1ia_          10 GGVETRYL---EA--------GKG-QPVILIHGGGAGAESEGNWRNVIPIL-ARHYRVIAMDMLGF   62 (268)
T ss_dssp             TTEEEEEE---EE--------CCS-SEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTTS
T ss_pred             CCEEEEEE---EE--------cCC-CeEEEECCCCCCccHHHHHHHHHHHH-hcCCEEEEEccccc
Confidence            89998733   21        222 45788999875432 23455555666 56999999999985

>d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetylcholinesterase-like
domain: Acetylcholinesterase
species: Pacific electric ray (Torpedo californica) [TaxId: 7787]

Probab=93.93  E-value=0.02  Score=58.16  Aligned_cols=53  Identities=17%  Similarity=0.174  Sum_probs=35.1

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccC---ccChHHHHHHhcCcEEEEeCCCC
Q 008927          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG---ILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~---~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      ++--+|.|++      ..+++|++|+||||-...-..   .++. ..+.++++.+|+.+|||=
T Consensus        92 L~LnI~~P~~------~~~~lPV~v~ihGG~~~~g~~~~~~~~~-~~~~~~~~vvvVt~nYRl  147 (532)
T d1ea5a_          92 LYLNIWVPSP------RPKSTTVMVWIYGGGFYSGSSTLDVYNG-KYLAYTEEVVLVSLSYRV  147 (532)
T ss_dssp             CEEEEEECSS------CCSSEEEEEEECCSTTTCCCTTCGGGCT-HHHHHHHTCEEEECCCCC
T ss_pred             CEEEEEeCCC------CCCCCcEEEEEEcCCcccccCCccccCc-chhhcccCccEEEEeecc
Confidence            4555667864      246789999999995322111   1222 234668899999999993

>d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Mycobacterial antigens
domain: Antigen 85c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.89  E-value=0.063  Score=49.30  Aligned_cols=64  Identities=11%  Similarity=0.116  Sum_probs=45.2

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccC---hHHHHHHhcCcEEEEeCCCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN---LSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~---~~~Q~~asrGyaVl~~NyRG  534 (548)
                      +.|.++++|...|..|+..+. +          +++|+|++.||.+...+..+|.   ...|+++++|++|++|+-..
T Consensus         5 ~v~~~~~~s~~~~r~i~~~~~-~----------~~~p~lyllhG~~g~~d~~~W~~~~~~~~~~~~~~~ivV~P~~~~   71 (280)
T d1dqza_           5 PVEYLQVPSASMGRDIKVQFQ-G----------GGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQ   71 (280)
T ss_dssp             CEEEEEEEETTTTEEEEEEEE-C----------CSSSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCT
T ss_pred             EEEEEEEecccCCCcceEEee-C----------CCCCEEEECCCCCCCCccchhhhcchHHHHHHhCCcEEEEECCCC
Confidence            356677766536788888773 1          3579999999976554433442   34589999999999999543

>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Fungal lipases
domain: Triacylglycerol lipase
species: Yeast (Candida antarctica), form b [TaxId: 34362]

Probab=93.82  E-value=0.019  Score=54.20  Aligned_cols=43  Identities=14%  Similarity=0.040  Sum_probs=31.7

Q ss_pred             CCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       492 ~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +.+.| ||++||--.......|....++|+++||.|+.+|++|.
T Consensus        29 ~~~~P-VvlvHG~~~~~~~~~~~~~~~~L~~~Gy~v~~~d~~g~   71 (317)
T d1tcaa_          29 SVSKP-ILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPF   71 (317)
T ss_dssp             SCSSE-EEEECCTTCCHHHHHTTTHHHHHHTTTCEEEEECCTTT
T ss_pred             CCCCc-EEEECCCCCCCcchhHHHHHHHHHhCCCeEEEecCCCC
Confidence            44567 56789965444433456677999999999999999873

>d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetylcholinesterase-like
domain: Acetylcholinesterase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.74  E-value=0.023  Score=57.94  Aligned_cols=54  Identities=20%  Similarity=0.338  Sum_probs=34.6

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccC-ccChHHHHH-HhcCcEEEEeCCC
Q 008927          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYW-TSRGWAFVDVNYG  533 (548)
Q Consensus       475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~-~~~~~~Q~~-asrGyaVl~~NyR  533 (548)
                      ++--||.|...     ..+++|+||+||||=...... ......+.+ +.++.+|+.+|||
T Consensus        97 L~LnI~~P~~~-----~~~~lPV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vvvVt~nYR  152 (542)
T d2ha2a1          97 LYLNVWTPYPR-----PASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYR  152 (542)
T ss_dssp             CEEEEEEESSC-----CSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCC
T ss_pred             CEEEEEecCCC-----CCCCCcEEEEEEECccccccCcccccCchhhhhhccceeEeeeee
Confidence            55666678531     257889999999995422111 111222344 4589999999999

>d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Hypothetical esterase YJL068C
domain: Hypothetical esterase YJL068C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.36  E-value=0.066  Score=49.92  Aligned_cols=68  Identities=13%  Similarity=0.103  Sum_probs=46.7

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCC---CCCCCCcEEEEEccCccccccCcc-ChHHHHHHhcCcEEEEeC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQA---SPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVN  531 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~---~~~~~~Pliv~iHGGP~~~~~~~~-~~~~Q~~asrGyaVl~~N  531 (548)
                      +.++|.|..-|.++.-.+|+|.+  |+.   +++++||+|.+.||.+.....+.- .-..++...+|++|+.++
T Consensus        15 ~~~s~~S~~l~~~~~~~VyLP~~--y~~~~~~~~~~yPVLYlLhG~~~~~~~w~~~~~~~~~~~~~~~~vv~~~   86 (299)
T d1pv1a_          15 IKLSHNSNSTKTSMNVNIYLPKH--YYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPD   86 (299)
T ss_dssp             EEEEEECSSSSSEEEEEEEECTT--TTSCCCSSCTTBCEEEEECCTTCCHHHHHHHSCHHHHHHHHTCEEEECC
T ss_pred             EEEEEECcccCCceEEEEEeCCc--ccccCcccCCCCCEEEEcCCCCCCHHHHHHhhhHHHHHHHcCCceecCC
Confidence            45677775468889999999954  532   246789999999997654322211 123355667899999986

>d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Mycobacterial antigens
domain: Antigen pt51/mpb51
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.32  E-value=0.1  Score=47.45  Aligned_cols=62  Identities=10%  Similarity=0.033  Sum_probs=44.6

Q ss_pred             CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCcc---ChHHHHHHhcCcEEEEeCC
Q 008927          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL---NLSIQYWTSRGWAFVDVNY  532 (548)
Q Consensus       460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~---~~~~Q~~asrGyaVl~~Ny  532 (548)
                      +.|.++++|...|++|...++.|.           +|+|++.||.+-+.....|   ....++.+.+|++|+.||-
T Consensus         3 ~~e~~~v~s~~~~r~~~~~v~~~~-----------~pvlylLhG~~g~~~~~~w~~~~~~~~~~~~~~~iVV~p~g   67 (267)
T d1r88a_           3 PYENLMVPSPSMGRDIPVAFLAGG-----------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAG   67 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEEEECCS-----------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECC
T ss_pred             ceEEEEEecccCCceeeEEEECCC-----------CCEEEEcCCCCCCCCcchhhhccHHHHHHhhCCeEEEEECC
Confidence            567888887647889999887762           3999999995432222222   2345788899999999985

>d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Epoxide hydrolase
domain: Bacterial epoxide hydrolase
species: Agrobacterium radiobacter [TaxId: 358]

Probab=92.95  E-value=0.097  Score=47.12  Aligned_cols=57  Identities=18%  Similarity=0.060  Sum_probs=38.9

Q ss_pred             eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      +..+++.  ||.+||-.-.           |. -|.||++||.|.+..  .|...+..|+ +||.|+.+|+||-
T Consensus         9 ~~~~~~~--~~~~l~y~~~-----------G~-gp~vv~lHG~~~~~~--~~~~~~~~l~-~~~~vi~~D~~G~   65 (293)
T d1ehya_           9 KHYEVQL--PDVKIHYVRE-----------GA-GPTLLLLHGWPGFWW--EWSKVIGPLA-EHYDVIVPDLRGF   65 (293)
T ss_dssp             CEEEEEC--SSCEEEEEEE-----------EC-SSEEEEECCSSCCGG--GGHHHHHHHH-TTSEEEEECCTTS
T ss_pred             cceEEEE--CCEEEEEEEE-----------CC-CCeEEEECCCCCCHH--HHHHHHHHHh-cCCEEEEecCCcc
Confidence            3445565  6778874331           22 267889999986543  4556667775 5899999999974

>d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Fungal lipases
domain: Type-B carboxylesterase/lipase
species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]

Probab=92.92  E-value=0.034  Score=56.74  Aligned_cols=55  Identities=22%  Similarity=0.347  Sum_probs=36.1

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccccc-CccC--hHH--HHHHhcCcEEEEeCCC
Q 008927          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILN--LSI--QYWTSRGWAFVDVNYG  533 (548)
Q Consensus       475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~-~~~~--~~~--Q~~asrGyaVl~~NyR  533 (548)
                      ++--+|.|++..    +++++|+||+||||=...-. ..++  ...  .+.+.++.+|+.+|||
T Consensus       106 L~LnI~~P~~~~----~~~~lPV~V~ihGG~f~~G~~~~~~~~~~~~~~~~~~~~vIvVt~nYR  165 (544)
T d1thga_         106 LYLNVFRPAGTK----PDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYR  165 (544)
T ss_dssp             CEEEEEEETTCC----TTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCC
T ss_pred             CEEEEEECCCCC----CCCCCCEEEEeccCCCccCCCccCCcchhhhhhhhccCCeEEEecccc
Confidence            566666786522    36789999999999543211 1222  222  2345689999999999

>d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carbon-carbon bond hydrolase
domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD)
species: Burkholderia xenovorans [TaxId: 36873]

Probab=92.77  E-value=0.031  Score=50.71  Aligned_cols=40  Identities=13%  Similarity=0.179  Sum_probs=29.1

Q ss_pred             cEEEEEccCccccccCc-cChHHHHHHhcCcEEEEeCCCCC
Q 008927          496 PLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       496 Pliv~iHGGP~~~~~~~-~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      |.||++||.+.+...+. +......++++||.|+.+|.||-
T Consensus        31 ~~ivllHG~~~~~~~~~~~~~~l~~~~~~g~~v~~~D~~G~   71 (283)
T d2rhwa1          31 ETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGF   71 (283)
T ss_dssp             SEEEEECCCSTTCCHHHHHTTTHHHHHHTTCEEEEECCTTS
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            67888999876654322 22334567899999999999983

>d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Haloalkane dehalogenase
domain: Haloalkane dehalogenase
species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]

Probab=92.69  E-value=0.1  Score=46.67  Aligned_cols=49  Identities=14%  Similarity=0.105  Sum_probs=34.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      ||.+||-.-.           |+. |.||++||.|.+..  .|...+..|+ ++|.|+.+|.||
T Consensus        16 ~g~~i~y~~~-----------G~g-~~vvllHG~~~~~~--~~~~~~~~L~-~~~~vi~~Dl~G   64 (298)
T d1mj5a_          16 KGRRMAYIDE-----------GTG-DPILFQHGNPTSSY--LWRNIMPHCA-GLGRLIACDLIG   64 (298)
T ss_dssp             TTEEEEEEEE-----------SCS-SEEEEECCTTCCGG--GGTTTGGGGT-TSSEEEEECCTT
T ss_pred             CCEEEEEEEE-----------cCC-CcEEEECCCCCCHH--HHHHHHHHHh-cCCEEEEEeCCC
Confidence            7888883321           222 67889999987654  4555555665 579999999998

>d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Fungal lipases
domain: Esterase EstA
species: Aspergillus niger [TaxId: 5061]

Probab=92.57  E-value=0.058  Score=54.43  Aligned_cols=56  Identities=21%  Similarity=0.268  Sum_probs=36.3

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccc-cCccChHHHHHH-hcCcEEEEeCCCC
Q 008927          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILNLSIQYWT-SRGWAFVDVNYGG  534 (548)
Q Consensus       475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~-~~~~~~~~Q~~a-srGyaVl~~NyRG  534 (548)
                      ++--||.|+...    .++++|+||+||||=...- ...++.....++ .++.+|+.+|||=
T Consensus        81 L~LnI~~P~~~~----~~~~~PV~v~ihGG~~~~G~~~~~~~~~~~~~~~~~vVvVt~nYRl  138 (517)
T d1ukca_          81 LFINVFKPSTAT----SQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRV  138 (517)
T ss_dssp             CEEEEEEETTCC----TTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCC
T ss_pred             CEEEEEeCCCCC----CCCCceEEEEEcCCccccCCCccccchhhhhhhccccceEEEEecc
Confidence            555566775421    3567899999999954432 223444444455 4578999999993

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=92.51  E-value=0.29  Score=47.86  Aligned_cols=53  Identities=8%  Similarity=-0.087  Sum_probs=34.5

Q ss_pred             eCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC--CceeeeEECCCCCEEEEE
Q 008927          198 FDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS--DFYAFPRMDPRGERMAWI  261 (548)
Q Consensus       198 ~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~--~~~~~p~~SPDGk~La~~  261 (548)
                      .+|||++| |+....       .++|.+||+++++   ...+.+-+  ......++||||+++..+
T Consensus        79 gtpDGr~l-fV~d~~-------~~rVavIDl~t~k---~~~ii~iP~g~gphgi~~spdg~t~YV~  133 (441)
T d1qnia2          79 GRYDGKYL-FINDKA-------NTRVARIRLDIMK---TDKITHIPNVQAIHGLRLQKVPKTNYVF  133 (441)
T ss_dssp             TEEEEEEE-EEEETT-------TTEEEEEETTTTE---EEEEEECTTCCCEEEEEECCSSBCCEEE
T ss_pred             ccCCCCEE-EEEcCC-------CCEEEEEECCCCc---EeeEEecCCCCCccceEEeccCCEEEEE
Confidence            47899986 553332       2589999999997   55544321  123345899999965433

>d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Biotin biosynthesis protein BioH
domain: Biotin biosynthesis protein BioH
species: Escherichia coli [TaxId: 562]

Probab=92.41  E-value=0.062  Score=47.74  Aligned_cols=38  Identities=16%  Similarity=0.064  Sum_probs=29.4

Q ss_pred             CcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       495 ~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      .|.||++||.+....  .|...+++|+ +||.|+.+|.||.
T Consensus        11 ~~~lvllHG~~~~~~--~~~~~~~~L~-~~~~vi~~D~~G~   48 (256)
T d1m33a_          11 NVHLVLLHGWGLNAE--VWRCIDEELS-SHFTLHLVDLPGF   48 (256)
T ss_dssp             SSEEEEECCTTCCGG--GGGGTHHHHH-TTSEEEEECCTTS
T ss_pred             CCeEEEECCCCCCHH--HHHHHHHHHh-CCCEEEEEeCCCC
Confidence            366778999986543  4666778886 6899999999984

>d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetylcholinesterase-like
domain: Butyryl cholinesterase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.30  E-value=0.046  Score=55.30  Aligned_cols=54  Identities=15%  Similarity=0.208  Sum_probs=35.0

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccC-ccChHHHHH-HhcCcEEEEeCCCC
Q 008927          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYW-TSRGWAFVDVNYGG  534 (548)
Q Consensus       475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~-~~~~~~Q~~-asrGyaVl~~NyRG  534 (548)
                      ++--+|.|.+      ..+++|+||+||||=...-.. ......+++ +..+.+|+.+|||=
T Consensus        90 L~lnI~~P~~------~~~~~PV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vVvVt~nYRl  145 (526)
T d1p0ia_          90 LYLNVWIPAP------KPKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRV  145 (526)
T ss_dssp             CEEEEEEESS------CCSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCC
T ss_pred             CEEEEEeCCC------CCCCCceEEEEECCCcccccCcccccCccccccccceeEEeccccc
Confidence            5555666864      246789999999995432211 122233444 45799999999993

>d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Bacterial lipase
domain: Lipase
species: Chromobacterium viscosum [TaxId: 42739]

Probab=91.58  E-value=0.067  Score=50.30  Aligned_cols=42  Identities=17%  Similarity=0.123  Sum_probs=31.0

Q ss_pred             CCCCcEEEEEccCcccccc----CccChHHHHHHhcCcEEEEeCCCC
Q 008927          492 EEKPPLLVKSHGGPTSEAR----GILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       492 ~~~~Pliv~iHGGP~~~~~----~~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      ..|+|+ |++||-+.....    ..|....+.|+++||-|+.+|+||
T Consensus         6 ~~k~Pv-vlvHG~~g~~~~~~~~~~~~~~~~~L~~~G~~V~~~~~~g   51 (319)
T d1cvla_           6 ATRYPV-ILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSG   51 (319)
T ss_dssp             CCSSCE-EEECCTTBSSEETTTEESSTTHHHHHHHTTCCEEECCCBC
T ss_pred             CCCCCE-EEECCCCCCcchhhhhhhHHHHHHHHHHCCCEEEEecCCC
Confidence            347896 568997644322    235667789999999999999985

>d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetylcholinesterase-like
domain: Bile-salt activated lipase (cholesterol esterase)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.58  E-value=0.037  Score=56.83  Aligned_cols=56  Identities=16%  Similarity=0.183  Sum_probs=34.6

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccc---cCccC----hHHHHHHhc-CcEEEEeCCC
Q 008927          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA---RGILN----LSIQYWTSR-GWAFVDVNYG  533 (548)
Q Consensus       475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~---~~~~~----~~~Q~~asr-GyaVl~~NyR  533 (548)
                      ++--+|.|.+..   ..++++|+||+||||=-..-   ...++    .....+|++ +.+|+.+|||
T Consensus        81 L~LNI~~P~~~~---~~~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~dg~~la~~~~vIvVt~nYR  144 (579)
T d2bcea_          81 LYLNIWVPQGRK---EVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYR  144 (579)
T ss_dssp             CEEEEEEEECSS---SCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCC
T ss_pred             CEEEEEECCCCC---CCCCCCcEEEEECCCcccCCCCCCcccCCccccchhhhhccCCEEEEeeccc
Confidence            566667775321   12568999999999943211   11121    123567776 5999999999

>d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetylcholinesterase-like
domain: Acetylcholinesterase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.22  E-value=0.046  Score=56.02  Aligned_cols=43  Identities=12%  Similarity=0.091  Sum_probs=29.1

Q ss_pred             CCCCcEEEEEccCcccccc-CccChHHHHHHhc-CcEEEEeCCCC
Q 008927          492 EEKPPLLVKSHGGPTSEAR-GILNLSIQYWTSR-GWAFVDVNYGG  534 (548)
Q Consensus       492 ~~~~Pliv~iHGGP~~~~~-~~~~~~~Q~~asr-GyaVl~~NyRG  534 (548)
                      .+++|+||+||||=-..-. .......+.++++ ..+|+.+|||=
T Consensus       136 ~~~lPV~V~ihGG~f~~Gs~~~~~~~~~~l~~~~~vVvVtinYRl  180 (571)
T d1dx4a_         136 TNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRV  180 (571)
T ss_dssp             CSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCC
T ss_pred             CCCCeEEEEEeCCCccCCCCcccccchhhhhhcCCeeEEeeccee
Confidence            6789999999999542211 1122334567766 58899999993

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.34  E-value=0.72  Score=41.25  Aligned_cols=80  Identities=10%  Similarity=0.069  Sum_probs=48.4

Q ss_pred             cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeC
Q 008927          242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR  320 (548)
Q Consensus       242 ~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~  320 (548)
                      ..+.+...+|||||++||-.+.        ...|.+.+++............+..    ..+....|+|++. +++....
T Consensus        10 h~d~I~~l~fsp~~~~L~s~s~--------Dg~v~iwd~~~~~~~~~~~~~~~h~----~~V~~v~f~~~~~~~l~sg~~   77 (342)
T d1yfqa_          10 PKDYISDIKIIPSKSLLLITSW--------DGSLTVYKFDIQAKNVDLLQSLRYK----HPLLCCNFIDNTDLQIYVGTV   77 (342)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEET--------TSEEEEEEEETTTTEEEEEEEEECS----SCEEEEEEEESSSEEEEEEET
T ss_pred             CCCCEEEEEEeCCCCEEEEEEC--------CCeEEEEEccCCCcceEEEEecCCC----CCEEEEEEeCCCCCEEEEccc
Confidence            3455788899999999885442        2457788887433321222222222    4577889999866 6666555


Q ss_pred             CCCeeeEEEEeccCCe
Q 008927          321 KNGFWNLHKWIESNNE  336 (548)
Q Consensus       321 ~~g~~~Ly~~d~~~g~  336 (548)
                       +|.  +..++...+.
T Consensus        78 -d~~--v~~w~~~~~~   90 (342)
T d1yfqa_          78 -QGE--ILKVDLIGSP   90 (342)
T ss_dssp             -TSC--EEEECSSSSS
T ss_pred             -ccc--eeeeeccccc
Confidence             553  5555555544

>d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carbon-carbon bond hydrolase
domain: Meta-cleavage product hydrolase CumD
species: Pseudomonas fluorescens [TaxId: 294]

Probab=89.13  E-value=0.1  Score=46.56  Aligned_cols=52  Identities=17%  Similarity=0.102  Sum_probs=34.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccc-ccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGGS  535 (548)
Q Consensus       471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~-~~~~~~~~~Q~~asrGyaVl~~NyRGS  535 (548)
                      ||..+|-.-+           |+. |.||++||.+... ....|...+..| ++||.|+.+|.||-
T Consensus        11 ~G~~~~Y~~~-----------G~G-~pvvllHG~~~~~~~~~~~~~~~~~l-~~~~~vi~~Dl~G~   63 (271)
T d1uk8a_          11 AGVLTNYHDV-----------GEG-QPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVGF   63 (271)
T ss_dssp             TTEEEEEEEE-----------CCS-SEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTTS
T ss_pred             CCEEEEEEEE-----------eeC-CeEEEECCCCCCccHHHHHHHHHHHH-hCCCEEEEEeCCCC
Confidence            8888873321           222 4567899987543 333455555666 47999999999984

>d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase/thioesterase 1
domain: Carboxylesterase
species: Bacillus cereus [TaxId: 1396]

Probab=89.12  E-value=0.2  Score=42.85  Aligned_cols=45  Identities=13%  Similarity=0.076  Sum_probs=28.7

Q ss_pred             EEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCC
Q 008927          478 YYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY  532 (548)
Q Consensus       478 ~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~Ny  532 (548)
                      .+|.|..       ++++|+||+.||+...  ...|......++ .+|.|+.|+.
T Consensus         4 ~i~~~~~-------~~~~P~vi~lHG~g~~--~~~~~~~~~~l~-~~~~vv~p~~   48 (202)
T d2h1ia1           4 HVFQKGK-------DTSKPVLLLLHGTGGN--ELDLLPLAEIVD-SEASVLSVRG   48 (202)
T ss_dssp             EEEECCS-------CTTSCEEEEECCTTCC--TTTTHHHHHHHH-TTSCEEEECC
T ss_pred             ccCCCCC-------CCCCCEEEEECCCCCC--HHHHHHHHHHhc-cCCceeeecc
Confidence            4667732       3567999999997532  233434445454 6888988864

>d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Bacterial lipase
domain: Lipase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.82  E-value=0.2  Score=46.04  Aligned_cols=42  Identities=14%  Similarity=-0.006  Sum_probs=31.1

Q ss_pred             CCCCcEEEEEccCcccccc---CccChHHHHHHhcCcEEEEeCCCC
Q 008927          492 EEKPPLLVKSHGGPTSEAR---GILNLSIQYWTSRGWAFVDVNYGG  534 (548)
Q Consensus       492 ~~~~Pliv~iHGGP~~~~~---~~~~~~~Q~~asrGyaVl~~NyRG  534 (548)
                      ..|+| ||++||=......   ..|....+.|..+||-|+.+|++|
T Consensus         5 ~~~~P-vvlvHG~~g~~~~~~~~yw~~i~~~L~~~G~~v~~~~~~~   49 (285)
T d1ex9a_           5 QTKYP-IVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQ   49 (285)
T ss_dssp             CCSSC-EEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCS
T ss_pred             CCCCC-EEEECCCCCCccccchhhHHHHHHHHHhCCCEEEEeCCCC
Confidence            46889 6899993322211   236667789999999999999986

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.62  E-value=11  Score=33.05  Aligned_cols=156  Identities=12%  Similarity=0.084  Sum_probs=74.2

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCCCceecCCC-CCC-CCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPD-YGE-PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~-~~~-~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~  233 (548)
                      .|+..+....+|.+++.+|  .-.+.+... ... ....-.+..+.++...++++....       ...|..++..+.. 
T Consensus        35 ~i~VaD~~n~rI~v~d~~G--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~g~~-  104 (279)
T d1q7fa_          35 DIIVADTNNHRIQIFDKEG--RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-------THQIQIYNQYGQF-  104 (279)
T ss_dssp             CEEEEEGGGTEEEEECTTS--CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-------GCEEEEECTTSCE-
T ss_pred             CEEEEECCCCEEEEEeCCC--CEEEEecccCCCcccccccccccccccccccceeccCC-------ccccccccccccc-
Confidence            5666665567899998875  322333111 000 001112234445544444443221       2467777776543 


Q ss_pred             cCcEEeeec-CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCC
Q 008927          234 QEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (548)
Q Consensus       234 ~~~~~L~~~-~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG  312 (548)
                        .+.+... ........+.++|+.++ ..  .     ...++++++.+  |++  ...+.... . ..........++|
T Consensus       105 --~~~~~~~~~~~p~~~avd~~G~i~v-~~--~-----~~~~~~~~~~~--g~~--~~~~g~~~-~-~~~~~~i~~d~~g  168 (279)
T d1q7fa_         105 --VRKFGATILQHPRGVTVDNKGRIIV-VE--C-----KVMRVIIFDQN--GNV--LHKFGCSK-H-LEFPNGVVVNDKQ  168 (279)
T ss_dssp             --EEEECTTTCSCEEEEEECTTSCEEE-EE--T-----TTTEEEEECTT--SCE--EEEEECTT-T-CSSEEEEEECSSS
T ss_pred             --eeecCCCcccccceeccccCCcEEE-Ee--e-----ccceeeEeccC--Cce--eecccccc-c-ccccceeeeccce
Confidence              3333211 12234456788887333 32  1     23567776654  442  22222211 0 0223445677888


Q ss_pred             cEEEEEeCCCCeeeEEEEeccCCeeEee
Q 008927          313 ELFFVTDRKNGFWNLHKWIESNNEVLAI  340 (548)
Q Consensus       313 ~L~~~sd~~~g~~~Ly~~d~~~g~~~~l  340 (548)
                      .+|+.... .  ..|++++.++.....+
T Consensus       169 ~i~v~d~~-~--~~V~~~d~~G~~~~~~  193 (279)
T d1q7fa_         169 EIFISDNR-A--HCVKVFNYEGQYLRQI  193 (279)
T ss_dssp             EEEEEEGG-G--TEEEEEETTCCEEEEE
T ss_pred             eEEeeecc-c--cceeeeecCCceeeee
Confidence            76655433 3  3678888755444433

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=84.79  E-value=15  Score=33.88  Aligned_cols=151  Identities=12%  Similarity=0.100  Sum_probs=71.8

Q ss_pred             EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceeccee--eCCCCC--EEEEEEeccCCCCCCceeEEEEEECCCC
Q 008927          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGI--FDPRFN--RYVTVREDRRQDALNSTTEIVAIALNGQ  231 (548)
Q Consensus       156 ~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~--~SpDG~--~i~~v~~~~~~~~~~~~~~l~~idl~~g  231 (548)
                      .|+|.-++.+-||+++++|  .+.+.+..+    ...--+..  +.-+++  -|++.+++. +.  ...-.+|.+|...+
T Consensus        41 SlI~gTdK~~Gl~vYdL~G--~~l~~~~~G----r~NNVDvr~~~~l~~~~~di~vasnR~-~~--~~~l~~~~id~~~~  111 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLEG--KMLHSYHTG----KLNNVDIRYDFPLNGKKVDIAAASNRS-EG--KNTIEIYAIDGKNG  111 (353)
T ss_dssp             CEEEEEETTSCCEEEETTC--CEEEECCSS----CEEEEEEEEEEEETTEEEEEEEEEECC-TT--TCEEEEEEEETTTT
T ss_pred             cEEEEEcCcCCEEEEcCCC--cEEEecccC----CcCccccccccccCCcceEEEEEeCCc-Cc--ceeEEEEEecCccc
Confidence            6788777777799999987  555565443    12222222  112333  344443332 11  01235677776665


Q ss_pred             CccCcEEeeec--------CCceeeeEE--CCC-CCEEEEEEecCCCCCCCCceEEEEEecCCCcee--eeEEEcCCCCC
Q 008927          232 NIQEPKVLVSG--------SDFYAFPRM--DPR-GERMAWIEWHHPNMPWDKAELWVGYISENGDVY--KRVCVAGFDPT  298 (548)
Q Consensus       232 ~~~~~~~L~~~--------~~~~~~p~~--SPD-Gk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~--~~~~l~~~~~~  298 (548)
                      .   .+.+...        .+.| ..++  +|+ |+..+|+....     ..-+.|.+.....+.+.  ..+.+...   
T Consensus       112 ~---l~~~~~~~~p~~~~~~~vY-Glc~y~~~~~g~~~afv~~k~-----G~v~q~~l~~~~~g~v~~~lvr~f~~~---  179 (353)
T d1h6la_         112 T---LQSITDPNRPIASAIDEVY-GFSLYHSQKTGKYYAMVTGKE-----GEFEQYELNADKNGYISGKKVRAFKMN---  179 (353)
T ss_dssp             E---EEECSCSSSCEECSSSSCC-CEEEEECTTTCCEEEEEECSS-----SEEEEEEEEECTTSSEEEEEEEEEECS---
T ss_pred             c---cccccccccccccccCcce-EEEEEecCCCCeEEEEEEcCC-----ceEEEEEEEcCCCCceeeEeeeccCCC---
Confidence            4   3333321        1222 2333  664 66667776321     12234545444344332  12223221   


Q ss_pred             cccCCcCceECcCCcEEEEEeCCCCeeeEEEEec
Q 008927          299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE  332 (548)
Q Consensus       299 ~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~  332 (548)
                        ..........+.+.+|+++.+.|   +|+++.
T Consensus       180 --~q~EGCVvDde~~~LyisEE~~G---iw~~~a  208 (353)
T d1h6la_         180 --SQTEGMAADDEYGSLYIAEEDEA---IWKFSA  208 (353)
T ss_dssp             --SCEEEEEEETTTTEEEEEETTTE---EEEEES
T ss_pred             --CccceEEEeCCCCcEEEecCccc---eEEEEe
Confidence              22345566666565566655344   455543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.74  E-value=14  Score=33.37  Aligned_cols=201  Identities=12%  Similarity=0.188  Sum_probs=106.7

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCC
Q 008927          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (548)
Q Consensus       192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~  271 (548)
                      ++....+.  +++.+||+|..+     ..+++..+|+.......++.+  .++   +....|..+-||.-+         
T Consensus        23 ~f~~~T~E--SDkyicVRe~~~-----~~~~VvIidl~n~~~~~Rrpi--~Ad---sAIMhP~~~IiALra---------   81 (327)
T d1utca2          23 GFSTLTME--SDKFICIREKVG-----EQAQVVIIDMNDPSNPIRRPI--SAD---SAIMNPASKVIALKA---------   81 (327)
T ss_dssp             STTTEECS--SSSEEEEEEEET-----TEEEEEEEETTSTTSCEEEEC--CCS---EEEECSSSSEEEEEE---------
T ss_pred             ccccEEEe--cCCEEEEEeccC-----CCceEEEEECCCCCcceeccc--chh---hhhcCCCCcEEEEec---------
Confidence            34444443  344678888532     257999999987651111222  222   235678888888443         


Q ss_pred             CceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCe-eEeecccccccCCC
Q 008927          272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRP  350 (548)
Q Consensus       272 ~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~-~~~l~~~~~d~~~p  350 (548)
                      +..|-+++++...++   .... -+    +.+---.|..+..|.++++.     .+|.+++++.. ...+..-......-
T Consensus        82 g~~LQiFnletK~kl---ks~~-~~----e~VvfWkWis~~~L~lVT~t-----aVYHW~~~g~s~P~k~fdR~~~L~~~  148 (327)
T d1utca2          82 GKTLQIFNIEMKSKM---KAHT-MT----DDVTFWKWISLNTVALVTDN-----AVYHWSMEGESQPVKMFDRHSSLAGC  148 (327)
T ss_dssp             TTEEEEEETTTTEEE---EEEE-CS----SCCCEEEESSSSEEEEECSS-----EEEEEESSSSCCCEEEEECCGGGTTC
T ss_pred             CCeEEEEehhHhhhh---ceEE-cC----CCcEEEEecCCCEEEEEcCC-----ceEEEcccCCCCchhhhhhcccccCc
Confidence            356999999853222   1111 11    34555689877779999876     68888885532 33443211122111


Q ss_pred             cccccCcceeeeeecCCCCEEEEEE--EeCC--eEEEEEEECCCCceEeecCCCceeEeee----ecCCEEEEEEecCCC
Q 008927          351 LWVFGINSYEIIQSHGEKNLIACSY--RQNG--RSYLGILDDFGHSLSLLDIPFTDIDNIT----LGNDCLFVEGASGVE  422 (548)
Q Consensus       351 ~w~~~~~~~~~~~~~~d~~~l~~~~--~~~g--~~~L~~~dl~~g~~~~l~~~~~~~~~~s----~d~~~l~~~~ss~~~  422 (548)
                      +    .-.|...   ++.++++...  .+++  ...+.++..+.+.-+.|......+..+.    .....++..+.....
T Consensus       149 Q----IInY~~d---~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  221 (327)
T d1utca2         149 Q----IINYRTD---AKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  221 (327)
T ss_dssp             E----EEEEEEC---TTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             e----EEEEEEC---CCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence            1    1124443   2667766543  2332  1233344455554555554333454442    222345555554344


Q ss_pred             CCeEEEEEcCC
Q 008927          423 PSSVAKVTLDD  433 (548)
Q Consensus       423 p~~l~~~d~~~  433 (548)
                      ...|.++++..
T Consensus       222 ~~kLhIiEig~  232 (327)
T d1utca2         222 GGKLHIIEVGT  232 (327)
T ss_dssp             EEEEEEEECSC
T ss_pred             CcEEEEEEcCC
Confidence            57888888754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=83.51  E-value=22  Score=34.84  Aligned_cols=51  Identities=12%  Similarity=0.141  Sum_probs=32.1

Q ss_pred             EEEEEEECCCCceE-eecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          381 SYLGILDDFGHSLS-LLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       381 ~~L~~~dl~~g~~~-~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      ..|..+|+.+|++. +...+..... .++..++ |+|+++   ....|+.+|.++|+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~Tagg-lVF~G~---~dg~l~A~Da~tGe  490 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGN-LVFQGT---AAGQMHAYSADKGE  490 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTT-EEEEEC---TTSEEEEEETTTCC
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCC-EEEEEC---CCCcEEEEECCCCc
Confidence            57889999999765 3332222222 2344555 566653   24689999999997

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=81.12  E-value=27  Score=34.25  Aligned_cols=51  Identities=10%  Similarity=-0.052  Sum_probs=31.5

Q ss_pred             EEEEEEECCCCceE-eecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927          381 SYLGILDDFGHSLS-LLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (548)
Q Consensus       381 ~~L~~~dl~~g~~~-~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~  435 (548)
                      ..|..+|+.+|++. +...+...++ .++..++ |+|+++   .-..++.+|.++|+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~Tagg-lVf~G~---~dg~l~A~Da~tGe  496 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGG-LVWYAT---LDGYLKALDNKDGK  496 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTT-EEEEEC---TTSEEEEEETTTCC
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCC-EEEEEC---CCCeEEEEECCCCc
Confidence            46888999999765 3222222222 2344555 555553   23689999999987