Citrus Sinensis ID: 008932

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
MQIKTLIHPLQGCSPSLIILNKTPALARFQSSFSPPSLRFFTTNILHRGVKTSCISPGKELIFDENSDNSISLSKNEEEKEEEEEEIEMEVKRGGLEKQSIWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVLLFASRGYGLPGCWFALVCFQSARFLLSLWRLLSPDGTLYSEDLNRYKMEKLKAA
cccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccc
ccccEEcEEccccccccccccccccccccccccccccccEccHHHHHcccHHHccccccEEEEcccccccccccccccccccccccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHHcccccHHHHHHccEEEccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHccc
mqiktlihplqgcspsliilnktpalarfqssfsppslrffttnilhrgvktscispgkelifdensdnsislskneeekeeEEEEIEMEVKRGGLEKQSIWSQMKEIVMftgpatglwlcgplmslidtavigqgssvelaalgpgtvmcDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFgswaltaftgprnvhlvpaantyvqirsFAWPAVLVGLVAQSaslgmkdslgpLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLnnkgynafsfsvpstNELATILGLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGmcsvwgeplsqtaQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVLGtigasvpwffpniftsdKSVIQEMHKVLIPYILAIVvspsthslegtllagrdvkFFSISMSGCFLLGALVLLFAsrgyglpgcWFALVCFQSARFLLSLWRllspdgtlysedLNRYKMEKLKAA
mqiktlihplqgcspSLIILNKTPALARFQSSFSPPSLRFFTTNILHRGVKTScispgkelifdensdnsislskneeekeeeeeEIEMevkrgglekQSIWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVLLFASRGYGLPGCWFALVCFQSARFLLSLWRLLSpdgtlysedlnrykmeklkaa
MQIKTLIHPLQGCSPSLIILNKTPALARFQSSFSPPSLRFFTTNILHRGVKTSCISPGKELIFDENSDNSISLSKNeeekeeeeeeiemeVKRGGLEKQSIWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMllksllligstlglvlgtigASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVLLFASRGYGLPGCWFALVCFQSARFLLSLWRLLSPDGTLYSEDLNRYKMEKLKAA
****TLIHPLQGCSPSLIILNKTPALARFQSSFSPPSLRFFTTNILHRGVKTSCISPGKELIF************************************SIWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVLLFASRGYGLPGCWFALVCFQSARFLLSLWRLLSPDGTLYSE*************
**********************************************************************************************************EIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSL***DKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVLLFASRGYGLPGCWFALVCFQSARFLLSLWRLLSPDGTLY***************
MQIKTLIHPLQGCSPSLIILNKTPALARFQSSFSPPSLRFFTTNILHRGVKTSCISPGKELIFDENSDNSI*********************RGGLEKQSIWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVLLFASRGYGLPGCWFALVCFQSARFLLSLWRLLSPDGTLYSEDLNRYKMEKLKAA
*QIKTLIHPLQGCSPSLIILNKTPALARFQSSFSPPSLRFFTTNILHRGVKTSCISPGKELIFDE*********************************QSIWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVLLFASRGYGLPGCWFALVCFQSARFLLSLWRLLSPDGTLYSEDLNRYKMEKLKA*
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
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MQIKTLIHPLQGCSPSLIILNKTPALARFQSSFSPPSLRFFTTNILHRGVKTSCISPGKELIFDENSDNSISxxxxxxxxxxxxxxxxxxxxxGGLEKQSIWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVLLFASRGYGLPGCWFALVCFQSARFLLSLWRLLSPDGTLYSEDLNRYKMEKLKAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query548 2.2.26 [Sep-21-2011]
Q8W4G3559 MATE efflux family protei yes no 0.989 0.969 0.658 0.0
Q945F0543 Enhanced disease suscepti no no 0.819 0.826 0.680 1e-178
Q84K71521 MATE efflux family protei no no 0.812 0.854 0.248 3e-23
Q9SYD6515 MATE efflux family protei no no 0.720 0.766 0.236 5e-14
Q9SFB0526 MATE efflux family protei no no 0.627 0.653 0.245 9e-14
Q9SVE7560 MATE efflux family protei no no 0.713 0.698 0.241 9e-13
Q7N1G0453 Probable multidrug resist no no 0.479 0.580 0.217 3e-05
P76352495 Uncharacterized transport N/A no 0.718 0.795 0.213 4e-05
Q92AG2456 Probable multidrug resist yes no 0.602 0.723 0.218 0.0002
Q8Y654456 Probable multidrug resist yes no 0.611 0.734 0.216 0.0007
>sp|Q8W4G3|MATE4_ARATH MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1 Back     alignment and function desciption
 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/563 (65%), Positives = 444/563 (78%), Gaps = 21/563 (3%)

Query: 1   MQIKTLIHPLQG--CSP------SLIILNKTPALARFQSS-FSPPSLRFFTTNILHRGVK 51
           +Q KTL   +    C+P      SL + +  P+   F+SS  S P     ++  L+R ++
Sbjct: 3   IQCKTLTFTVSSIPCNPKLPFPSSLTLRSWNPSFPSFRSSAVSGPK----SSLKLNRFLR 58

Query: 52  TSCISPGKELIFD-ENSDNSISL----SKNEEEKEEEEEEIEMEVKRGGLEKQSIWSQMK 106
            +C S  +EL+ D E  + SIS     + N      E E    EVK   L  QSIW QMK
Sbjct: 59  -NCASTNQELVVDGETGNGSISELQGDAANGSISPVEVEAEVEEVKVDDLATQSIWGQMK 117

Query: 107 EIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATS 166
           EIVMFTGPA GLWLCGPLMSLIDTAVIGQGSS+ELAALGP TV+CDYL Y FMFLS+ATS
Sbjct: 118 EIVMFTGPAAGLWLCGPLMSLIDTAVIGQGSSLELAALGPATVICDYLCYTFMFLSVATS 177

Query: 167 NMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAA 226
           N+VATSLARQDK+EVQHQIS+LLF+GLACG  M++ TR FGSWALTAFTG +N  +VPAA
Sbjct: 178 NLVATSLARQDKDEVQHQISILLFIGLACGVTMMVLTRLFGSWALTAFTGVKNADIVPAA 237

Query: 227 NTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVALCSFLGYGIA 286
           N YVQIR  AWPAVL+G VAQSASLGMKDS GPLKALAVASAING+GDV LC+FLGYGIA
Sbjct: 238 NKYVQIRGLAWPAVLIGWVAQSASLGMKDSWGPLKALAVASAINGVGDVVLCTFLGYGIA 297

Query: 287 GAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKVAFY 346
           GAAWATMVSQVV+AYMM+ +LN KGY+AFSF VPS +EL TI GLA PVFITM+SKV FY
Sbjct: 298 GAAWATMVSQVVAAYMMMDALNKKGYSAFSFCVPSPSELLTIFGLAAPVFITMMSKVLFY 357

Query: 347 SLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARML 406
           +L++YFATSMGTN +AAHQVM+Q Y M +VWGEPLSQTAQSFMPEL++G+NR+L KAR+L
Sbjct: 358 TLLVYFATSMGTNIIAAHQVMLQIYTMSTVWGEPLSQTAQSFMPELLFGINRNLPKARVL 417

Query: 407 LKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSL 466
           LKSL++IG+TLG+V+GTIG +VPW FP IFT DK V  EMHKV+IPY LA+ ++PSTHSL
Sbjct: 418 LKSLVIIGATLGIVVGTIGTAVPWLFPGIFTRDKVVTSEMHKVIIPYFLALSITPSTHSL 477

Query: 467 EGTLLAGRDVKFFSISMSGCF-LLGALVLLFASRGYGLPGCWFALVCFQSARFLLSLWRL 525
           EGTLLAGRD+++ S+SM+GC  + G L++L ++ G+GL GCW+ALV FQ ARF LSL+RL
Sbjct: 478 EGTLLAGRDLRYISLSMTGCLAVAGLLLMLLSNGGFGLRGCWYALVGFQWARFSLSLFRL 537

Query: 526 LSPDGTLYSEDLNRYKMEKLKAA 548
           LS DG LYSED +RY  EK+KAA
Sbjct: 538 LSRDGVLYSEDTSRYA-EKVKAA 559

Arabidopsis thaliana (taxid: 3702)
>sp|Q945F0|EDS5_ARATH Enhanced disease susceptibility 5 OS=Arabidopsis thaliana GN=EDS5 PE=2 SV=1 Back     alignment and function description
>sp|Q84K71|MATE2_ARATH MATE efflux family protein 2, chloroplastic OS=Arabidopsis thaliana GN=DTX44 PE=2 SV=1 Back     alignment and function description
>sp|Q9SYD6|MATE1_ARATH MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2 Back     alignment and function description
>sp|Q9SFB0|FRD3_ARATH MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3 PE=1 SV=1 Back     alignment and function description
>sp|Q9SVE7|MATE3_ARATH MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana GN=DTX45 PE=2 SV=2 Back     alignment and function description
>sp|Q7N1G0|NORM_PHOLL Probable multidrug resistance protein NorM OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=norM PE=3 SV=1 Back     alignment and function description
>sp|P76352|YEEO_ECOLI Uncharacterized transporter YeeO OS=Escherichia coli (strain K12) GN=yeeO PE=3 SV=3 Back     alignment and function description
>sp|Q92AG2|NORM_LISIN Probable multidrug resistance protein NorM OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=norM PE=3 SV=1 Back     alignment and function description
>sp|Q8Y654|NORM_LISMO Probable multidrug resistance protein NorM OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=norM PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query548
255543829552 DNA-damage-inducible protein f, putative 0.952 0.945 0.721 0.0
224103337459 predicted protein [Populus trichocarpa] 0.832 0.993 0.778 0.0
225427734535 PREDICTED: MATE efflux family protein 4, 0.821 0.841 0.793 0.0
297821327547 hypothetical protein ARALYDRAFT_480999 [ 0.932 0.934 0.689 0.0
255543827567 DNA-damage-inducible protein f, putative 0.992 0.959 0.659 0.0
224103339553 predicted protein [Populus trichocarpa] 0.979 0.971 0.657 0.0
297744748445 unnamed protein product [Vitis vinifera] 0.808 0.995 0.795 0.0
240254500559 MATE efflux family protein [Arabidopsis 0.989 0.969 0.658 0.0
20197910555 expressed protein [Arabidopsis thaliana] 0.961 0.949 0.675 0.0
21554183555 enhanced disease susceptibility 5 [Arabi 0.914 0.902 0.701 0.0
>gi|255543829|ref|XP_002512977.1| DNA-damage-inducible protein f, putative [Ricinus communis] gi|223547988|gb|EEF49480.1| DNA-damage-inducible protein f, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  802 bits (2072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/532 (72%), Positives = 454/532 (85%), Gaps = 10/532 (1%)

Query: 17  LIILNKTPALARFQSSFSPPSLRFFTTNILHRGVKTSCISPGKELIFDENSDNSISLSKN 76
           LI  NK P L         PSL          G+ ++CIS  K++++D  SDN+  +   
Sbjct: 29  LITFNKPPPLHL-------PSLHLSALKYQRNGLISNCISSSKDVVYD--SDNNQGIESG 79

Query: 77  EEEKEEEEEEIEMEVKRGGLEKQSIWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQG 136
            +    + +E E+E++R GLE QSIW QMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQG
Sbjct: 80  NDGNIVQFQEQEVEIERDGLENQSIWKQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQG 139

Query: 137 SSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQISVLLFVGLACG 196
           SS+ELAALGPGTV+CDY++YVFMFLS+ATSN+VATSLAR++KNEVQHQIS+LLFVGLACG
Sbjct: 140 SSIELAALGPGTVVCDYMSYVFMFLSVATSNLVATSLARRNKNEVQHQISILLFVGLACG 199

Query: 197 FLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDS 256
             M LFTRFFGSWALTAFTGP++VH+VPAANTYVQIR  AWPAV+VG VAQSASLGMKDS
Sbjct: 200 VFMFLFTRFFGSWALTAFTGPKHVHIVPAANTYVQIRGLAWPAVIVGWVAQSASLGMKDS 259

Query: 257 LGPLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFS 316
            GPLKALAV+S +NG+GDV LCSF+GYGIAGAAWATMVSQV++AYMMI++LN KGYNAF+
Sbjct: 260 WGPLKALAVSSIVNGVGDVVLCSFMGYGIAGAAWATMVSQVIAAYMMIEALNKKGYNAFA 319

Query: 317 FSVPSTNELATILGLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSV 376
            ++P+ +EL +I+G+A PVFITM+SKVAFYSL+IYFATSMGT++VAAHQVMIQTY MC+V
Sbjct: 320 VTIPTLDELLSIVGIAAPVFITMMSKVAFYSLLIYFATSMGTHSVAAHQVMIQTYSMCTV 379

Query: 377 WGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIF 436
           WGEPLSQTAQSFMPEL+YG NRSL KAR LLKSL++IG+TLGLVLGTIG SVPW FPN+F
Sbjct: 380 WGEPLSQTAQSFMPELLYGANRSLAKARTLLKSLVIIGATLGLVLGTIGTSVPWLFPNLF 439

Query: 437 TSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVL-L 495
           T D+++IQEMHKVL+PYI+A+ V+PSTHSLEGTL+AGRD+KF S+SM+GCF  G LVL L
Sbjct: 440 TPDQNIIQEMHKVLLPYIMALAVTPSTHSLEGTLMAGRDLKFLSLSMTGCFAFGGLVLML 499

Query: 496 FASRGYGLPGCWFALVCFQSARFLLSLWRLLSPDGTLYSEDLNRYKMEKLKA 547
             SRGYGL GCW+ALV FQ +RF L+L RLLSPDG LYSEDL+RYK+EKLKA
Sbjct: 500 ICSRGYGLAGCWYALVGFQWSRFFLALQRLLSPDGVLYSEDLSRYKIEKLKA 551

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224103337|ref|XP_002313017.1| predicted protein [Populus trichocarpa] gi|222849425|gb|EEE86972.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225427734|ref|XP_002274783.1| PREDICTED: MATE efflux family protein 4, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297821327|ref|XP_002878546.1| hypothetical protein ARALYDRAFT_480999 [Arabidopsis lyrata subsp. lyrata] gi|297324385|gb|EFH54805.1| hypothetical protein ARALYDRAFT_480999 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255543827|ref|XP_002512976.1| DNA-damage-inducible protein f, putative [Ricinus communis] gi|223547987|gb|EEF49479.1| DNA-damage-inducible protein f, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224103339|ref|XP_002313018.1| predicted protein [Populus trichocarpa] gi|222849426|gb|EEE86973.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297744748|emb|CBI38010.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|240254500|ref|NP_565509.4| MATE efflux family protein [Arabidopsis thaliana] gi|75162471|sp|Q8W4G3.1|MATE4_ARATH RecName: Full=MATE efflux family protein 4, chloroplastic; AltName: Full=Protein DTX46; Flags: Precursor gi|17065002|gb|AAL32655.1| Unknown protein [Arabidopsis thaliana] gi|22136238|gb|AAM91197.1| unknown protein [Arabidopsis thaliana] gi|330252070|gb|AEC07164.1| MATE efflux family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|20197910|gb|AAD23682.2| expressed protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21554183|gb|AAM63262.1| enhanced disease susceptibility 5 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query548
TAIR|locus:2050140559 AT2G21340 [Arabidopsis thalian 0.989 0.969 0.626 2.5e-177
TAIR|locus:2120267543 EDS5 "AT4G39030" [Arabidopsis 0.832 0.839 0.652 1.1e-158
TAIR|locus:2057135521 AT2G38330 "AT2G38330" [Arabido 0.740 0.779 0.255 2.5e-24
TAIR|locus:2077477526 FRD3 "FERRIC REDUCTASE DEFECTI 0.633 0.659 0.236 8.2e-19
TAIR|locus:2008236515 AT1G51340 [Arabidopsis thalian 0.642 0.683 0.216 4.2e-18
UNIPROTKB|Q8E8P4455 dinF "DNA damage-inducible mul 0.492 0.593 0.267 1.1e-12
TIGR_CMR|SO_4617455 SO_4617 "DNA-damage-inducible 0.492 0.593 0.267 1.1e-12
UNIPROTKB|Q9KVQ1454 VC_0090 "DNA-damage-inducible 0.706 0.852 0.210 3.8e-11
TIGR_CMR|VC_0090454 VC_0090 "DNA-damage-inducible 0.706 0.852 0.210 3.8e-11
UNIPROTKB|P28303459 dinF "DinF MATE Transporter" [ 0.445 0.531 0.235 1.4e-10
TAIR|locus:2050140 AT2G21340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1722 (611.2 bits), Expect = 2.5e-177, P = 2.5e-177
 Identities = 353/563 (62%), Positives = 421/563 (74%)

Query:     1 MQIKTLIHPLQG--CSP------SLIILNKTPALARFQSS-FSPPSLRFFTTNILHRGVK 51
             +Q KTL   +    C+P      SL + +  P+   F+SS  S P     ++  L+R ++
Sbjct:     3 IQCKTLTFTVSSIPCNPKLPFPSSLTLRSWNPSFPSFRSSAVSGPK----SSLKLNRFLR 58

Query:    52 TSCISPGKELIFD-ENSDNSISL----SKNXXXXXXXXXXXXXXVKRGGLEKQSIWSQMK 106
              +C S  +EL+ D E  + SIS     + N              VK   L  QSIW QMK
Sbjct:    59 -NCASTNQELVVDGETGNGSISELQGDAANGSISPVEVEAEVEEVKVDDLATQSIWGQMK 117

Query:   107 EIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATS 166
             EIVMFTGPA GLWLCGPLMSLIDTAVIGQGSS+ELAALGP TV+CDYL Y FMFLS+ATS
Sbjct:   118 EIVMFTGPAAGLWLCGPLMSLIDTAVIGQGSSLELAALGPATVICDYLCYTFMFLSVATS 177

Query:   167 NMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAA 226
             N+VATSLARQDK+EVQHQIS+LLF+GLACG  M++ TR FGSWALTAFTG +N  +VPAA
Sbjct:   178 NLVATSLARQDKDEVQHQISILLFIGLACGVTMMVLTRLFGSWALTAFTGVKNADIVPAA 237

Query:   227 NTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVALCSFLGYGIA 286
             N YVQIR  AWPAVL+G VAQSASLGMKDS GPLKALAVASAING+GDV LC+FLGYGIA
Sbjct:   238 NKYVQIRGLAWPAVLIGWVAQSASLGMKDSWGPLKALAVASAINGVGDVVLCTFLGYGIA 297

Query:   287 GAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKVAFY 346
             GAAWATMVSQVV+AYMM+ +LN KGY+AFSF VPS +EL TI GLA PVFITM+SKV FY
Sbjct:   298 GAAWATMVSQVVAAYMMMDALNKKGYSAFSFCVPSPSELLTIFGLAAPVFITMMSKVLFY 357

Query:   347 SLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMX 406
             +L++YFATSMGTN +AAHQVM+Q Y M +VWGEPLSQTAQSFMPEL++G+NR+L KAR+ 
Sbjct:   358 TLLVYFATSMGTNIIAAHQVMLQIYTMSTVWGEPLSQTAQSFMPELLFGINRNLPKARVL 417

Query:   407 XXXXXXXXXXXXXXXXXXXASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSL 466
                                 +VPW FP IFT DK V  EMHKV+IPY LA+ ++PSTHSL
Sbjct:   418 LKSLVIIGATLGIVVGTIGTAVPWLFPGIFTRDKVVTSEMHKVIIPYFLALSITPSTHSL 477

Query:   467 EGTLLAGRDVKFFSISMSGCFLL-GALVLLFASRGYGLPGCWFALVCFQSARFLLSLWRL 525
             EGTLLAGRD+++ S+SM+GC  + G L++L ++ G+GL GCW+ALV FQ ARF LSL+RL
Sbjct:   478 EGTLLAGRDLRYISLSMTGCLAVAGLLLMLLSNGGFGLRGCWYALVGFQWARFSLSLFRL 537

Query:   526 LSPDGTLYSEDLNRYKMEKLKAA 548
             LS DG LYSED +RY  EK+KAA
Sbjct:   538 LSRDGVLYSEDTSRYA-EKVKAA 559
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
TAIR|locus:2120267 EDS5 "AT4G39030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057135 AT2G38330 "AT2G38330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077477 FRD3 "FERRIC REDUCTASE DEFECTIVE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008236 AT1G51340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8E8P4 dinF "DNA damage-inducible multidrug and toxin efflux protein DinF" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4617 SO_4617 "DNA-damage-inducible protein F" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KVQ1 VC_0090 "DNA-damage-inducible protein F" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0090 VC_0090 "DNA-damage-inducible protein F" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P28303 dinF "DinF MATE Transporter" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8W4G3MATE4_ARATHNo assigned EC number0.65890.98900.9695yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_IX1583
hypothetical protein (460 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.125.175.1
hypothetical protein (470 aa)
  •     0.465
fgenesh4_pg.C_LG_II000946
hypothetical protein (486 aa)
  •     0.463
gw1.XIII.2310.1
hypothetical protein (458 aa)
  •     0.462
gw1.II.1185.1
hypothetical protein (525 aa)
  •     0.455
gw1.XIII.2315.1
hypothetical protein (458 aa)
  •     0.449
grail3.0019033701
hypothetical protein (488 aa)
  •     0.445
gw1.XIII.2326.1
hypothetical protein (458 aa)
  •     0.425
gw1.X.6692.1
hypothetical protein (455 aa)
  •     0.425
gw1.XII.43.1
hypothetical protein (450 aa)
  •     0.421
gw1.XII.1638.1
hypothetical protein (460 aa)
  •     0.419

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query548
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 3e-98
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 6e-43
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 2e-33
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 6e-29
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 6e-28
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 4e-24
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 4e-24
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-22
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 2e-17
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 1e-14
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 3e-12
PRK10367441 PRK10367, PRK10367, DNA-damage-inducible SOS respo 1e-11
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 8e-10
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 2e-08
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 2e-08
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 2e-08
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 8e-07
pfam01554161 pfam01554, MatE, MatE 3e-06
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 6e-06
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 3e-05
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 6e-05
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 7e-04
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 7e-04
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 0.001
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 0.002
PRK10189478 PRK10189, PRK10189, MATE family multidrug exporter 0.002
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 0.003
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information 
 Score =  303 bits (779), Expect = 3e-98
 Identities = 112/429 (26%), Positives = 194/429 (45%), Gaps = 10/429 (2%)

Query: 104 QMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSVELAALGPGTVMCDYLTYVFMFLS 162
             +EI+    PA    +  PL+ L+DTAV+G  GS+  L A+  GT + + L ++F FL 
Sbjct: 1   LHREILALALPAILSNITVPLLGLVDTAVVGHLGSAAYLGAVALGTTIFNTLFWLFGFLR 60

Query: 163 IATSNMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHL 222
           + T+ +VA +L   D+ E    +   L + LA G L++L      + AL        V  
Sbjct: 61  MGTTGLVAQALGAGDREEAIALLVRALLLALAIGLLLILLQSPLLALALLLLGASAAV-- 118

Query: 223 VPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVALCSFLG 282
              A  Y++IR    PAVL+  VA     G++D+  PL    V + +N + D      LG
Sbjct: 119 AALARQYLRIRILGAPAVLLNYVATGWFRGLQDTRTPLILQIVGNVVNIVLDPLFVFGLG 178

Query: 283 YGIAGAAWATMVSQVVSAYMMIQSLN---NKGYNAFSFSVPSTNELATILGLAGPVFITM 339
           +G+AGAA AT+++Q + A + +  L         + S  +PS   L  +  L   +FI  
Sbjct: 179 WGVAGAALATVIAQYLGALLGLWLLRRRVRLLGKSLSRRLPSKAALKRLFKLNRDIFIRT 238

Query: 340 ISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRS 399
           ++ +A +      A  +G   +AA+Q+++Q + + S + +  +  A++       G    
Sbjct: 239 LALLAAFLFFTALAARLGDVILAANQILLQFWLLSSYFLDGFAYAAEAL-VGRALG-AGD 296

Query: 400 LVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAI-V 458
              AR + + LL  G  LG++L  +          +FT D +V+  +    +P++  +  
Sbjct: 297 RKAARRVARRLLQWGLGLGVLLALLFFLGGEPIIRLFTDDPAVL-ALAATYLPWLALLPP 355

Query: 459 VSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVLLFASRGYGLPGCWFALVCFQSARF 518
           +      L+G  +   D ++   SM     +   +L      +G  G W AL+ F   R 
Sbjct: 356 IGALAFVLDGIFIGATDTRYLRNSMLVSLAVFLPLLFLLVPLWGNHGLWLALILFMLLRG 415

Query: 519 LLSLWRLLS 527
           L    RL  
Sbjct: 416 LTLALRLPR 424

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|182413 PRK10367, PRK10367, DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|182293 PRK10189, PRK10189, MATE family multidrug exporter; Provisional Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 548
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PRK10459492 colanic acid exporter; Provisional 99.95
COG2244480 RfbX Membrane protein involved in the export of O- 99.91
PRK00187464 multidrug efflux protein NorA; Provisional 99.88
PRK10189 478 MATE family multidrug exporter; Provisional 99.86
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.86
PRK01766456 multidrug efflux protein; Reviewed 99.85
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.84
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.84
TIGR01695502 mviN integral membrane protein MviN. This model re 99.81
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.74
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.72
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.72
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.7
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.68
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.68
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.64
PRK15099416 O-antigen translocase; Provisional 99.59
PRK10459492 colanic acid exporter; Provisional 99.59
COG2244480 RfbX Membrane protein involved in the export of O- 99.56
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.5
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.09
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.07
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.02
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.92
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.6
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.24
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.07
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.04
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.95
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.86
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.62
COG4267467 Predicted membrane protein [Function unknown] 96.66
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-55  Score=451.54  Aligned_cols=428  Identities=21%  Similarity=0.238  Sum_probs=405.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHH
Q 008932          102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEV  181 (548)
Q Consensus       102 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~lG~~~la~~~~~~~i~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~  181 (548)
                      .++.|+++++++|++++++++.+++++|++++||+|++++|+.+++.++...+..+..|++.|.+++++|++|+||++++
T Consensus        13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~~   92 (455)
T COG0534          13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKKA   92 (455)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHHH
Confidence            34569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHHH
Q 008932          182 QHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLK  261 (548)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  261 (548)
                      ++..++++.++++++++.+++.+.+.++++.+++.  ++|+.+.+..|+++..++.|+..+..++.+++|+.|+++.+++
T Consensus        93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          93 KRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGA--PAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999999999999999999976  4579999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHhhh-cC-cchhhHHHHHHHHHHHHHHHHHHHHhhccc--cc--ccccCCChhHHHHHHHhhHHH
Q 008932          262 ALAVASAINGIGDVALCSF-LG-YGIAGAAWATMVSQVVSAYMMIQSLNNKGY--NA--FSFSVPSTNELATILGLAGPV  335 (548)
Q Consensus       262 ~~~~~~~~~i~l~~~li~~-~~-~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~l~~~~p~  335 (548)
                      .+++++++|+++|++|++. ++ +|+.|+++||++++++..++..+++.++++  ..  .+..+++++.+++++|+|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999988 57 999999999999999999999988877652  11  334588999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHHHHH
Q 008932          336 FITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGS  415 (548)
Q Consensus       336 ~~~~~~~~~~~~i~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~  415 (548)
                      +++...+...+.+.+.+++++|++.+|+|+++.++.++.++++.|++++.+++++ +++|+ ||++++|+..+.+++++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG-~~~Ga-~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVG-QNLGA-GNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC-CCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999995 59999 999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHH-HHHHHHHHH
Q 008932          416 TLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSG-CFLLGALVL  494 (548)
Q Consensus       416 ~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~v~~~~~  494 (548)
                      .++...+++++++++++.++|++|+++.+...+++.+..+..++++.+.+..+++||.||+|.++..++. .+++.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999988766 567788988


Q ss_pred             HHHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHcCCCccc
Q 008932          495 LFASRG-YGLPGCWFALVCFQSARFLLSLWRLLSPDGTLY  533 (548)
Q Consensus       495 ~~~~~~-~G~~G~~~a~~~~~~~~~~~~~~~l~~~~~~~~  533 (548)
                      +.+... +|..|+|+++..++.++.+...+++++++|...
T Consensus       409 ~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (455)
T COG0534         409 YLLGFFFLGLAGVWIGFPLSLILRAILLLLRLRRGRWRRK  448 (455)
T ss_pred             HHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            877777 999999999999999999999999999888764

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query548
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 3e-29
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  119 bits (300), Expect = 3e-29
 Identities = 68/456 (14%), Positives = 150/456 (32%), Gaps = 46/456 (10%)

Query: 99  QSIWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVF 158
                +   ++    P     +    M  +DT + G  S++++AA+     +        
Sbjct: 5   HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG 64

Query: 159 MFLSIATSNMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPR 218
           + L +A   +VA       ++++  ++   L + L     ++    F   + +       
Sbjct: 65  VGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVL-FQTQFIIRFMDVEE 123

Query: 219 NVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVAL- 277
            +        Y+    FA PA L+    +S + GM  +   +    +   +N   +    
Sbjct: 124 AM--ATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFV 181

Query: 278 ---CSFLGYGIAGAAWATMVSQVVSAYMMI----QSLNNKGYNAFS-FSVPSTNELATIL 329
                    G  G   AT +   +   +++     S        F  F  P   EL  + 
Sbjct: 182 YGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLF 241

Query: 330 GLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFM 389
            L  PV   +  +V  ++++      +G+  VAAHQV +               ++  FM
Sbjct: 242 RLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNF-------------SSLVFM 288

Query: 390 PELIYGV-----------NRSLVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTS 438
             +  G             +    A +     L+ G     +   +          ++T 
Sbjct: 289 FPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTE 348

Query: 439 DKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVK---------FFSISMSGCFLL 489
           ++ V+    ++L+   +   +        G+L   +D+          ++ + +   ++L
Sbjct: 349 NQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYIL 408

Query: 490 GALVLLFASRGYGLPGCWFALVCFQSARFLLSLWRL 525
           G +      +  G  G W   +   SA  L+   RL
Sbjct: 409 G-MTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRL 443
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query548
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.82
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=1.6e-46  Score=392.73  Aligned_cols=426  Identities=15%  Similarity=0.149  Sum_probs=391.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHH
Q 008932          102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEV  181 (548)
Q Consensus       102 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~lG~~~la~~~~~~~i~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~  181 (548)
                      +++.|++++.++|.++++++..+++.+|+.+++++|++++|+++++.++..+...+..|++.+..+.++|++|++|+++.
T Consensus         8 ~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~   87 (460)
T 3mkt_A            8 KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHKI   87 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Confidence            45569999999999999999999999999999999999999999999998888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHHH
Q 008932          182 QHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLK  261 (548)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  261 (548)
                      ++.+++++.+.++++++.+++ +.+.++++.+++.  |++..+.+..|+++++++.++..+....++++|+.|+++.+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  164 (460)
T 3mkt_A           88 PFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDV--EEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV  164 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSS--TTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            999999999999999998776 6788899888865  6788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHhhh----cCcchhhHHHHHHHHHHHHHHHHHHHHhhccccc-c----cccCCChhHHHHHHHhh
Q 008932          262 ALAVASAINGIGDVALCSF----LGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNA-F----SFSVPSTNELATILGLA  332 (548)
Q Consensus       262 ~~~~~~~~~i~l~~~li~~----~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~l~~~  332 (548)
                      .++++.++|++++++++..    +++|+.|+++|+.+++.+..++.++++++++... .    +..+++++.+|+++++|
T Consensus       165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  244 (460)
T 3mkt_A          165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG  244 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence            9999999999999999965    3799999999999999999998888776654221 1    12356788899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHH
Q 008932          333 GPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLL  412 (548)
Q Consensus       333 ~p~~~~~~~~~~~~~i~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~  412 (548)
                      +|.+++.+.+++.+.+++.+++++|++++++|+++.++.++...+..+++++..|.+++ ++|+ ||++++|+..+++.+
T Consensus       245 ~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~-~~g~-~~~~~~~~~~~~~~~  322 (460)
T 3mkt_A          245 FPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGH-KLGE-QDTKGAAIAANVGLM  322 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHS-SCCCTTTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999965 8898 999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHHHH-HHHH
Q 008932          413 IGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCF-LLGA  491 (548)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~v~~  491 (548)
                      ++..++++.+++++++++++..+|++|+++.+.+..+++++.+..++++++.+..+++++.||+|.++..++.+. ++++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i  402 (460)
T 3mkt_A          323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGL  402 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888888999999999999999999999999999999999999988765 8999


Q ss_pred             HHHHHHHhc-------CCchhHHHHHHHHHHHHHHHHHHHHHcCCCcc
Q 008932          492 LVLLFASRG-------YGLPGCWFALVCFQSARFLLSLWRLLSPDGTL  532 (548)
Q Consensus       492 ~~~~~~~~~-------~G~~G~~~a~~~~~~~~~~~~~~~l~~~~~~~  532 (548)
                      ++.+.+.+.       +|+.|+|+|+.+++++..++..++++++.+..
T Consensus       403 ~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~  450 (460)
T 3mkt_A          403 PTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQS  450 (460)
T ss_dssp             HHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCCST
T ss_pred             HHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999877776       99999999999999999998888877766554
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00