Citrus Sinensis ID: 008934
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 548 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M817 | 607 | Probable peptide transpor | yes | no | 0.981 | 0.886 | 0.492 | 1e-158 | |
| Q8LPL2 | 591 | Probable peptide/nitrate | no | no | 0.981 | 0.910 | 0.485 | 1e-153 | |
| Q9LYD5 | 481 | Putative peptide/nitrate | no | no | 0.864 | 0.985 | 0.399 | 1e-101 | |
| Q8RX77 | 620 | Nitrate transporter 1.7 O | no | no | 0.954 | 0.843 | 0.342 | 1e-95 | |
| Q9M9V7 | 587 | Probable peptide/nitrate | no | no | 0.928 | 0.867 | 0.338 | 2e-92 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.947 | 0.910 | 0.347 | 3e-91 | |
| Q9LV10 | 616 | Probable peptide/nitrate | no | no | 0.932 | 0.829 | 0.324 | 3e-89 | |
| Q9SX20 | 596 | Probable nitrite transpor | no | no | 0.972 | 0.894 | 0.346 | 8e-89 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.941 | 0.905 | 0.342 | 1e-86 | |
| Q944G5 | 636 | Probable peptide/nitrate | no | no | 0.930 | 0.801 | 0.322 | 1e-86 |
| >sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 560 bits (1442), Expect = e-158, Method: Compositional matrix adjust.
Identities = 280/568 (49%), Positives = 381/568 (67%), Gaps = 30/568 (5%)
Query: 10 KNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFL 69
K KGG+ T+PFIIANEAFE++A+ G PNMI+YL R+Y TN++F+W+AA+NF
Sbjct: 19 KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFT 78
Query: 70 PIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG--CESATW 127
P++GA L+DSY+GR+ I + LGMVLLW T +LP KP CD G C S+T
Sbjct: 79 PLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTA 138
Query: 128 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 187
SQL LY AF L+S+GSGGIR SLAFGA+QLD + K++ L+S+F WYY + + +
Sbjct: 139 SQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVL 198
Query: 188 VAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVAS 247
+A T IVYIQ++LGWK+GFGVPAV+ML++AL F LASP YV SL GL Q +VA+
Sbjct: 199 IAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAA 258
Query: 248 FKNRRTKLPTQATE-EMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNS 306
+K R+ LP + Y+H K S PS+ LRFLNKAC+ + E+++ DG A NP
Sbjct: 259 YKKRKLSLPDHHDSFDCYYHMKDSEIKAPSQKLRFLNKACLISNREEEIGSDGFALNPWR 318
Query: 307 LCTVEQVEELKALIK------------------------ASSMDRHVTPN---FEIPSGS 339
LCT ++VEELKALIK A+SMDR ++ + F++P+GS
Sbjct: 319 LCTTDKVEELKALIKVIPIWSTGIMMSINTSQSSFQLLQATSMDRRLSRHGSSFQVPAGS 378
Query: 340 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAA 399
F +F I+ L +W+ LYDRAV+PLASKI+G+P +LS+KLRMG+GL S +M A+VE+
Sbjct: 379 FGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLGLFMSFLAMAISAMVESF 438
Query: 400 RRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIAS 459
RR AI++G +++ AVV +SAMW +P VL GLA A IGQTEF+YTE PKSMSSIA+
Sbjct: 439 RRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAEALTAIGQTEFFYTEFPKSMSSIAA 498
Query: 460 TLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLY 519
+L G G++ A+L+AS+++NAV+++T R G W+ NINKGHY+YYYW+L +S N +Y
Sbjct: 499 SLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHYNYYYWVLAIMSFINVIY 558
Query: 520 YLACCKAYGPFKGRVGTAFDDKDGMEEE 547
Y+ C +YGP +V + EEE
Sbjct: 559 YVICSWSYGPLVDQVRNGRVNGVREEEE 586
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 276/569 (48%), Positives = 370/569 (65%), Gaps = 31/569 (5%)
Query: 7 LINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAAT 66
+ + KGGL T+PFIIANE FE++A+ G NMILYL +Y + ++F+W AAT
Sbjct: 18 ITRRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFMWVAAT 77
Query: 67 NFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLR-NGCESA 125
NF+P+VGA L+DSY+GR+ I + LLGMV+LW T +LP KP C C SA
Sbjct: 78 NFMPLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPCVATAGTNCSSA 137
Query: 126 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSAS 185
T SQL LY AF L+S+GSGGIR SLAFGA+QLD + K++ L+S+F WYY S +
Sbjct: 138 TSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSSVA 197
Query: 186 SIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLV 245
++A T IVYIQD+LGWK+GFG+PA++MLL+ F ASP YVK + SL GL QV+
Sbjct: 198 VLIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSKSLFTGLAQVVA 257
Query: 246 ASFKNRRTKLPTQA-TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNP 304
A++ R LP + + Y+ K S PS+ LRFLNKAC + ++DL DG A N
Sbjct: 258 AAYVKRNLTLPDHHDSRDCYYRLKDSELKAPSDKLRFLNKACAISNRDEDLGSDGLALNQ 317
Query: 305 NSLCTVEQVEELKALIK------------------------ASSMDRHVTPN--FEIPSG 338
LCT +QVE+LKAL+K A SMDR ++ N F+IP+G
Sbjct: 318 WRLCTTDQVEKLKALVKVIPVWSTGIMMSINVSQNSFQLLQAKSMDRRLSSNSTFQIPAG 377
Query: 339 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEA 398
SF +F I+ L W+ LYDRA+LPLASKI+G+P ++++K+RMG+GL S +M A VE
Sbjct: 378 SFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGLFISFLAMAVSATVEH 437
Query: 399 ARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 458
RR AI++G+++D + V +SAMW +P VL GLA A IGQTEF+YTE PKSMSSIA
Sbjct: 438 YRRKTAISQGLANDANSTVSISAMWLVPQYVLHGLAEALTGIGQTEFFYTEFPKSMSSIA 497
Query: 459 STLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 518
++L G G++ AN++AS+I+NAV + +K+ GN WI NINKGHYDYYYW+L LS N +
Sbjct: 498 ASLFGLGMAVANILASVILNAVKNSSKQ-GNVSWIEDNINKGHYDYYYWVLAILSFVNVI 556
Query: 519 YYLACCKAYGPFKGRVGTAFDDKDGMEEE 547
YY+ C +YGP +V D +GM +E
Sbjct: 557 YYVVCSWSYGPTVDQVRN--DKVNGMRKE 583
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYD5|PTR48_ARATH Putative peptide/nitrate transporter At5g11570 OS=Arabidopsis thaliana GN=At5g11570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 212/531 (39%), Positives = 311/531 (58%), Gaps = 57/531 (10%)
Query: 1 MITEPLLINKNP-KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNII 59
M E LL+ + K G+ T+PFI+A++A E++A G PNMIL+L EY M T A NI+
Sbjct: 1 MDQEALLVGRTLLKRGIPTIPFILASQALEKLAYFGLVPNMILFLTVEYGMGTAEAANIL 60
Query: 60 FIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLR 119
F+W+AATNF P+VGA +ADSY GR+ +IGFG L GMVLLW TTI+ P CD+L
Sbjct: 61 FLWSAATNFFPLVGAFIADSYTGRFPLIGFGSSISLTGMVLLWLTTII----RPECDKLT 116
Query: 120 NGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTK-SKGALQSYFSWY 178
N C+ T + + LY F L ++G+GG+RSS LAF A+QL ++ + +L++ F+WY
Sbjct: 117 NVCQPTTLLKSVLLYSFFALTAIGAGGVRSSCLAFAADQLQPNQTSRVTTSSLETLFNWY 176
Query: 179 YVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLP 238
Y V + ++ + +V++Q GW++GFGV M LS FF ASP+YV+ + T
Sbjct: 177 YFSVMVACFLSQSLLVFVQTTYGWQIGFGVSVAAMALSVALFFAASPYYVRFQKPT---- 232
Query: 239 GLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPD 298
R ++ P + R+ E+L+ L ++ P
Sbjct: 233 ------------RNSRNPWKLC-----------RVQQVEDLKSL----------INVIPI 259
Query: 299 GRASNPNSLCTVEQVEELKALIKASSMDRHV-TPNFEIPSGSFNIFAILTLTIWIGLYDR 357
SL T QV + +++A +MDRH FEIP GS+ IF +++ +++GLYD
Sbjct: 260 WSTGIILSLVTACQVSFI--VLQAKTMDRHTFIQGFEIPPGSYGIFLVISFLLFLGLYDL 317
Query: 358 AVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 417
++PL S +P +L + +RM G + S ++A A E ARR A +E +
Sbjct: 318 VIVPLLSWALREPFRLGVMVRMWAGYVISVLCISALAATEYARRKTARDESGT------- 370
Query: 418 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIM 477
++SAMW LPY++L G+A A N I Q EF+Y+ELPK+MSS+A+TLS ++AA+L++S I+
Sbjct: 371 KLSAMWLLPYMILGGIAEALNTIAQNEFFYSELPKTMSSVATTLSSLNMAAASLISSWII 430
Query: 478 NAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 528
VD T G WI NI++GH DYYYWLL LS+ N LY++ C K+YG
Sbjct: 431 TIVDVTTY----GSWITENIDEGHLDYYYWLLVGLSLLNVLYFVWCKKSYG 477
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 351 bits (900), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 193/564 (34%), Positives = 306/564 (54%), Gaps = 41/564 (7%)
Query: 8 INKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATN 67
+ K P GG R + FI+ NE ER+ ++G N ++YL + +++E A N+I IW+ TN
Sbjct: 48 VEKKP-GGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTN 106
Query: 68 FLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACD-QLRNGCESAT 126
P+VGA ++D+YVGR++ I F F LLG++ + T P P +C+ Q C
Sbjct: 107 LTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCGGPN 166
Query: 127 WSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS 186
Q+ L +S+GSGGIR S+ FG +Q D+ KG + S+F+WYY+ +
Sbjct: 167 KLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKG-VASFFNWYYMTFTVVL 225
Query: 187 IVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVA 246
I+ T +VYIQD + W +GF +P +M L+ + FF YV K S+ G+ QV+VA
Sbjct: 226 IITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVA 285
Query: 247 SFKNRRTKLPTQATEEMYHHG---KGSM--RLMPSENLRFLNKACMAKHPEQDLTPDGRA 301
+ K R+ KLP + + ++ K S+ +L S R L+KA + E DLTP+G
Sbjct: 286 ARKKRKLKLPAEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVI--EGDLTPEGPP 343
Query: 302 SNPNSLCTVEQVEELKALIK-------------------------ASSMDRHVTPNFEIP 336
++ LC+V++VEE+K LI+ A MDR++ P FEIP
Sbjct: 344 ADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNLGPKFEIP 403
Query: 337 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIV 396
+GS ++ ++LT+ I++ YDR +P +I G ++L R+G G++F+ SM IV
Sbjct: 404 AGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSMIVAGIV 463
Query: 397 EAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 456
E RR +IN G D + MS W P L+L GL AFN+IGQ EF+ ++ P+ M S
Sbjct: 464 ERMRRIRSINAG---DPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRS 520
Query: 457 IASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMAN 516
IA++L + ++ ++S ++ V + W+ N+N G DY+Y+L+ L + N
Sbjct: 521 IANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYYLIAVLGVVN 580
Query: 517 FLYYLACCKAYGPFKGRVGTAFDD 540
+Y+ C + Y + +VG +D
Sbjct: 581 LVYFWYCARGY---RYKVGLPIED 601
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Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 340 bits (871), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 185/546 (33%), Positives = 304/546 (55%), Gaps = 37/546 (6%)
Query: 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGA 74
G + +PFII NE FE++ VG + N+++YL +NM++ A ++ I+ +NF IV A
Sbjct: 22 GWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAA 81
Query: 75 LLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPAC-DQLRNGCESATWSQLMPL 133
L DSY GRY+ + F C LG V + T ++ P C ++ + C + Q+M L
Sbjct: 82 FLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFL 141
Query: 134 YFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI 193
A L+ +G+GGIR +L FGA+Q D +G ++S+F+WY+ + + +V++T I
Sbjct: 142 AGAMVLLVIGAGGIRPCNLPFGADQFDPKTKEGKRG-IESFFNWYFFTFTFAQMVSLTLI 200
Query: 194 VYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRT 253
VY+Q N+ W +G +PA++MLL + FF S YVK KA+ S + +T+V+V + K RR
Sbjct: 201 VYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRRL 260
Query: 254 KLPTQATEEMYHHGKGSMR---LMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTV 310
K P E+Y++ + L +E RFL+K+ + ++ L DG + LC++
Sbjct: 261 K-PV-GPNELYNYIASDFKNSKLGHTEQFRFLDKSAIQTQDDK-LNKDGSPVDAWKLCSM 317
Query: 311 EQVEELKALIKASSM-------------------------DRHVTP-NFEIPSGSFNIFA 344
+QVEE+K +I+ + DR + P +F+IP+GS+ +F
Sbjct: 318 QQVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGSYTVFL 377
Query: 345 ILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIA 404
+L +TI+I +YDR ++P K G+ ++ R+G GL SM AIVE RR +A
Sbjct: 378 MLGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCITSMMVSAIVEQYRRKVA 437
Query: 405 INE---GISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL 461
+ + G++ A+ MS MW +P LVL G+A A +GQ EFYY + P++M S A +L
Sbjct: 438 LTKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQMEFYYKQFPENMRSFAGSL 497
Query: 462 SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL 521
G+ A+ +++ +++AV D T+ G W+P ++NKG +Y+Y+L+ + N Y+L
Sbjct: 498 YYCGIGLASYLSTFLLSAVHDTTEGFSGGSWLPEDLNKGRLEYFYFLVAGMMTLNLAYFL 557
Query: 522 ACCKAY 527
Y
Sbjct: 558 LVSHWY 563
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (862), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 194/559 (34%), Positives = 296/559 (52%), Gaps = 40/559 (7%)
Query: 9 NKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNF 68
NK G + FI+ NE ER+A G N++ YL N A N + W+
Sbjct: 21 NKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYI 80
Query: 69 LPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWS 128
P++GA +AD+Y+GRY I F + GM LL + +PG KP C+ + C + S
Sbjct: 81 TPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNA--DTCHPNS-S 137
Query: 129 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIV 188
Q + A +++LG+GGI+ +FGA+Q D+ D + K S+F+W+Y ++ +++
Sbjct: 138 QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENE-KIKKSSFFNWFYFSINVGALI 196
Query: 189 AVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASF 248
A T +V+IQ N+GW GFGVP V M+++ FF S FY + S L + QV+VA+F
Sbjct: 197 AATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAF 256
Query: 249 KNRRTKLPTQA-----TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASN 303
+ K+P T + + KGS +L+ ++NL+F +KA A + D DG N
Sbjct: 257 RKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKA--AVESQSDSIKDGEV-N 313
Query: 304 PNSLCTVEQVEELKALI-------------------------KASSMDRHVTPNFEIPSG 338
P LC+V QVEELK++I + ++MD+H+ NFEIPS
Sbjct: 314 PWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSA 373
Query: 339 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEA 398
S ++F +++ W +YD+ ++PLA K + RMGIGL+ S +M ++E
Sbjct: 374 SLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEV 433
Query: 399 ARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 458
R D + + MS WQ+P +L G A F IGQ EF+Y + P +M S+
Sbjct: 434 VRLDYVKTHNAYDQKQ--IHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLC 491
Query: 459 STLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 518
S LS ++ N ++++++ V ITK+ G GWIP N+N+GH DY+++LL LS NFL
Sbjct: 492 SALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFL 551
Query: 519 YYLACCKAYGPFKGRVGTA 537
YL K Y +K VG A
Sbjct: 552 VYLWISKRY-KYKKAVGRA 569
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 329 bits (844), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 177/546 (32%), Positives = 297/546 (54%), Gaps = 35/546 (6%)
Query: 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGA 74
G + +PFII NE FE++ +G N+++YL +N+++ A II ++ NF V A
Sbjct: 46 GWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIINAFSGTINFGTFVAA 105
Query: 75 LLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG-CESATWSQLMPL 133
L D+Y GRY+ + C LG ++ T +P P AC + C + Q+ L
Sbjct: 106 FLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPAACGTAADSICNGPSGGQIAFL 165
Query: 134 YFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI 193
G + +G+GGIR +LAFGA+Q + + +G + S+F+WY+ + + I+++T +
Sbjct: 166 LMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKRG-IDSFFNWYFFTFTFAQILSLTLV 224
Query: 194 VYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRT 253
VY+Q N+ W +G +PAV+M L+ L FF YVK KA+ S L G+ QV+ + K R
Sbjct: 225 VYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRGL 284
Query: 254 KLPTQATEEMYHH---GKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTV 310
K Q +Y++ + +L ++ RFL+KA + PE L PDG+ ++P LCT+
Sbjct: 285 KPAKQPWLNLYNYYPPKYANSKLKYTDQFRFLDKAAILT-PEDKLQPDGKPADPWKLCTM 343
Query: 311 EQVEELKALIK------ASSM-------------------DRHV-TPNFEIPSGSFNIFA 344
+QVEE+K +++ ASS+ DR + + F IP+ ++ +F
Sbjct: 344 QQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSDRRLGSGGFVIPAATYVVFL 403
Query: 345 ILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIA 404
+ +T++I +YDR ++P +I G ++L R+G G+ F+TAS+ VE RR+ A
Sbjct: 404 MTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFFATASLVVAGFVEERRRTFA 463
Query: 405 INE---GISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL 461
+ + G++ + MSAMW +P L L+G+A AF IGQ EFYY + P++M S A ++
Sbjct: 464 LTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFAAIGQMEFYYKQFPENMRSFAGSI 523
Query: 462 SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL 521
G ++ + S ++ V T+ G W+ ++NKG D +Y+++ + NF Y+L
Sbjct: 524 FYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLAEDLNKGRLDLFYFMIAGILAVNFAYFL 583
Query: 522 ACCKAY 527
+ Y
Sbjct: 584 VMSRWY 589
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (840), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 197/568 (34%), Positives = 306/568 (53%), Gaps = 35/568 (6%)
Query: 11 NPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLP 70
PKGGL T+PFI ANE E++A VGF NMI YL + ++ T A N + + ++ P
Sbjct: 22 RPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTP 81
Query: 71 IVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQL 130
++GA +ADS+ GR+ I F +GM LL + I+P +PP C C A +QL
Sbjct: 82 LLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKG-EEVCVVADTAQL 140
Query: 131 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV 190
LY A L +LGSGGIR +AFGA+Q D+ D ++ +YF+WYY + A+ ++AV
Sbjct: 141 SILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTW-NYFNWYYFCMGAAVLLAV 199
Query: 191 TCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKN 250
T +V+IQDN+GW +G G+P V M LS ++F Y S L QV VA+F+
Sbjct: 200 TVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRK 259
Query: 251 RRTKLPTQAT-----EEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPN 305
R+ ++ + + +E+ +L ++++ FL+KA + E+D G+ N
Sbjct: 260 RKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVT--EEDNLKPGQIPNHW 317
Query: 306 SLCTVEQVEELKALIK-------------------------ASSMDRHVTPNFEIPSGSF 340
L TV +VEELK++I+ A +M+RH+T +F+IP+GS
Sbjct: 318 RLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSM 377
Query: 341 NIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAAR 400
++F + + I YDR + +A K G ++ RMGIG + S + VE R
Sbjct: 378 SVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKR 437
Query: 401 RSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIAST 460
+S+AI G+ D +V +S +W +P L G+A AF IG EF+Y + P+SM S A+
Sbjct: 438 KSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATA 497
Query: 461 LSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP-SNINKGHYDYYYWLLTALSMANFLY 519
L +S N V++L++ V + + W+P +N+N+G +Y+YWL+T L N +Y
Sbjct: 498 LFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQAVNLVY 557
Query: 520 YLACCKAYGPFKGRVGTAFDDKDGMEEE 547
YL C K Y +V + +D ++EE
Sbjct: 558 YLWCAKIYTYKPVQVHHSKEDSSPVKEE 585
|
May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 321 bits (822), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 192/561 (34%), Positives = 294/561 (52%), Gaps = 45/561 (8%)
Query: 9 NKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNF 68
NKN G + FI+ E ER+A G + N+I YL ++ NME +A+ + W+
Sbjct: 22 NKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYA 81
Query: 69 LPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWS 128
P++GA +AD+Y+GRY I + GM LL + +PG P + C AT
Sbjct: 82 TPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPTCSGET---CH-ATAG 137
Query: 129 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIV 188
Q + A L++LG+GGI+ +FGA+Q D D K K + S+F+W+Y ++ +++
Sbjct: 138 QTAITFIALYLIALGTGGIKPCVSSFGADQFDDTD-EKEKESKSSFFNWFYFVINVGAMI 196
Query: 189 AVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASF 248
A + +V+IQ N+GW G GVP V M ++ + FF S FY K S L + QV+VAS
Sbjct: 197 ASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASC 256
Query: 249 KNRRTKLPTQATEEMYHHGK-------GSMRLMPSENLRFLNKACMAKHPEQDLTPDGRA 301
+ + K+P E + + + GS +L ++ L F +KA A E D ++
Sbjct: 257 RKSKVKIPED--ESLLYENQDAESSIIGSRKLEHTKILTFFDKA--AVETESDNKGAAKS 312
Query: 302 SNPNSLCTVEQVEELKALIK-------------------------ASSMDRHVTPNFEIP 336
S+ LCTV QVEELKALI+ +++D+H+ PNF+IP
Sbjct: 313 SSWK-LCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIP 371
Query: 337 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIV 396
S S ++F L++ W +YD+ ++P A K G + R+GIGL+ S SM + I+
Sbjct: 372 SASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGIL 431
Query: 397 EAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 456
E AR + + ++ + M+ WQ+P L G A F IGQ EF+Y + P +M S
Sbjct: 432 EVARLNYVQTHNLYNE--ETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRS 489
Query: 457 IASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMAN 516
+ S LS ++ N +++ ++ V +T+ GG GWI N+N GH DY++WLL LS N
Sbjct: 490 LCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLN 549
Query: 517 FLYYLACCKAYGPFKGRVGTA 537
FL YL K Y +K G A
Sbjct: 550 FLVYLWIAKWY-TYKKTTGHA 569
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q944G5|PTR44_ARATH Probable peptide/nitrate transporter At3g47960 OS=Arabidopsis thaliana GN=At3g47960 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 320 bits (821), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 176/545 (32%), Positives = 296/545 (54%), Gaps = 35/545 (6%)
Query: 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGA 74
G + +PFII NE FE++ +G N+++YL +N+++ A II ++ NF + A
Sbjct: 64 GWKVMPFIIGNETFEKLGIIGTLSNLLVYLTSVFNLKSYTAATIINAFSGTINFGTFIAA 123
Query: 75 LLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLY 134
L D+Y GRY+ + C LG ++ T +P P AC + CE + Q++ L
Sbjct: 124 FLCDTYFGRYKTLSVAVIACFLGSFVILLTAAIPSLHPVACGN-KISCEGPSVGQILFLL 182
Query: 135 FAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194
G + +G+GGIR +LAFGA+Q + + KG + S+F+WY+ + + I+++T +V
Sbjct: 183 MGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKKG-INSFFNWYFFTFTFAQIISLTAVV 241
Query: 195 YIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTK 254
YIQ N+ W +G +P +M L+ + FF YVK KA+ S L G+ +V+ A+ K R K
Sbjct: 242 YIQSNVSWTIGLIIPVALMFLACVIFFAGDRLYVKVKASGSPLAGIARVIAAAIKKRGLK 301
Query: 255 LPTQATEEMYHH---GKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE 311
Q +Y+H + L ++ RFL+KA + PE+ L DG AS+P LCT++
Sbjct: 302 PVKQPWVNLYNHIPSNYANTTLKYTDQFRFLDKAAIMT-PEEKLNSDGTASDPWKLCTLQ 360
Query: 312 QVEELKALIK------ASSM-------------------DRHV-TPNFEIPSGSFNIFAI 345
QVEE+K +++ AS++ DR + + F IP+ ++ +F +
Sbjct: 361 QVEEVKCIVRVIPIWFASTIYYLAITIQMTYPVFQALQSDRRLGSGGFRIPAATYVVFLM 420
Query: 346 LTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAI 405
+T++I YDR ++P ++ G +SL R+G G F+ S+ +E RR+ A+
Sbjct: 421 TGMTVFIIFYDRVLVPSLRRVTGLETGISLLQRIGAGFTFAIMSLLVSGFIEERRRNFAL 480
Query: 406 NE---GISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS 462
+ G++ + MSA+W +P L L+G+A AF IGQ EFYY + P++M S A ++
Sbjct: 481 TKPTLGMAPRTGEISSMSALWLIPQLTLAGIAEAFAAIGQMEFYYKQFPENMKSFAGSIF 540
Query: 463 GAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLA 522
G ++ +AS +++ V T +G W+ ++NK DY+Y++LT L + N Y+L
Sbjct: 541 YVGAGVSSYLASFLISTVHRTTAHSPSGNWLAEDLNKAKLDYFYFMLTGLMVVNMAYFLL 600
Query: 523 CCKAY 527
+ Y
Sbjct: 601 MARWY 605
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 548 | ||||||
| 255550992 | 578 | nitrate transporter, putative [Ricinus c | 0.978 | 0.927 | 0.596 | 0.0 | |
| 224087732 | 605 | predicted protein [Populus trichocarpa] | 0.981 | 0.889 | 0.573 | 0.0 | |
| 224106908 | 606 | predicted protein [Populus trichocarpa] | 0.989 | 0.894 | 0.564 | 0.0 | |
| 224141759 | 564 | predicted protein [Populus trichocarpa] | 0.959 | 0.932 | 0.573 | 0.0 | |
| 224141763 | 581 | predicted protein [Populus trichocarpa] | 0.996 | 0.939 | 0.570 | 0.0 | |
| 224141757 | 568 | predicted protein [Populus trichocarpa] | 0.959 | 0.926 | 0.578 | 1e-180 | |
| 356507909 | 568 | PREDICTED: probable peptide transporter | 0.967 | 0.933 | 0.562 | 1e-178 | |
| 224141761 | 515 | predicted protein [Populus trichocarpa] | 0.894 | 0.951 | 0.592 | 1e-174 | |
| 255549914 | 612 | nitrate transporter, putative [Ricinus c | 0.981 | 0.879 | 0.524 | 1e-173 | |
| 297743243 | 622 | unnamed protein product [Vitis vinifera] | 0.994 | 0.876 | 0.528 | 1e-171 |
| >gi|255550992|ref|XP_002516544.1| nitrate transporter, putative [Ricinus communis] gi|223544364|gb|EEF45885.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/562 (59%), Positives = 408/562 (72%), Gaps = 26/562 (4%)
Query: 7 LINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAAT 66
LI+ N KGG R LPFI+ N AFE++A+ G TPNMILYL REY +E NIIF W+AAT
Sbjct: 16 LISSNQKGGFRVLPFIVVNMAFEKVASFGLTPNMILYLTREYRIEAAKGANIIFFWSAAT 75
Query: 67 NFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQL-RNGCESA 125
NF PI+GA +ADSYVGR+RMIGFG LLG++LLW T ++P A+P CDQ + C+S
Sbjct: 76 NFTPILGAFIADSYVGRFRMIGFGSIASLLGIILLWLTAVIPQARPLPCDQFTSDSCQSP 135
Query: 126 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSAS 185
T QL+ LY +FGL+S+G+GGIRSSSLAFGA+QL G K G L+ + SWYYV VS S
Sbjct: 136 TTLQLLLLYSSFGLLSIGAGGIRSSSLAFGADQLGMGQSLKRAGILERFISWYYVLVSVS 195
Query: 186 SIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLV 245
++VA+TCIVYIQD +GWKVGFGVP V+M ++ LSFF AS FYVKSK S G QVL
Sbjct: 196 AVVAMTCIVYIQDAMGWKVGFGVPVVLMAIAVLSFFSASSFYVKSKPTASSFTGFAQVLA 255
Query: 246 ASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPN 305
A++ NR +Q + + YH+ KG+ + PSE LRFLNKAC+ ++PE+DLTPDGRASNP
Sbjct: 256 AAYHNRSIPFSSQDSNDGYHNRKGATVVAPSEMLRFLNKACIIENPEEDLTPDGRASNPW 315
Query: 306 SLCTVEQVEELKALIK------------------------ASSMDRHVTPNFEIPSGSFN 341
SLCTV QVEELKALIK AS+MDRH+ FEIP+GS N
Sbjct: 316 SLCTVNQVEELKALIKIIPIWLSGMIMSVNVAQSSFPVLQASTMDRHIISKFEIPAGSMN 375
Query: 342 IFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARR 401
+F +++L IW+ LYDR ++PLASK++GKP +LSLK RMGIG+L S+ASM A+AI E RR
Sbjct: 376 VFMVISLAIWVSLYDRVIVPLASKLRGKPVRLSLKQRMGIGILLSSASMLAFAIAEKNRR 435
Query: 402 SIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL 461
AI EG SDD AVV MS +W LPYLVL GLA F+ IGQ EFYYTELPKSMSSIA+TL
Sbjct: 436 ERAIREGFSDDPNAVVNMSVLWLLPYLVLCGLAETFSAIGQNEFYYTELPKSMSSIAATL 495
Query: 462 SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL 521
GLSAANL+AS IM+ +D +KRGG W+ SNINKGHYDYYYWLL +LS+ NF+YYL
Sbjct: 496 FDMGLSAANLLASFIMSTIDSFSKRGGEESWVSSNINKGHYDYYYWLLASLSLLNFVYYL 555
Query: 522 ACCKAYGPFKGRVGTAFDDKDG 543
AC K YGP + + G A DD DG
Sbjct: 556 ACSKGYGPCRAKEGNAPDD-DG 576
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224087732|ref|XP_002335129.1| predicted protein [Populus trichocarpa] gi|222832886|gb|EEE71363.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/588 (57%), Positives = 407/588 (69%), Gaps = 50/588 (8%)
Query: 1 MITEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIF 60
MITEPLL +PKGG+R L FIIANEA ER+A+ G + NMILYL REY M+ + I+F
Sbjct: 1 MITEPLL--SSPKGGIRALFFIIANEALERLASFGLSTNMILYLTREYGMDAASGAQILF 58
Query: 61 IWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL----------------------GM 98
+++AA NF+PI+GA LAD+YVGRY MIGFGC LL GM
Sbjct: 59 LYSAAGNFMPIIGAFLADTYVGRYPMIGFGCIASLLTTIYVSGQRIYGSVAILSQTKVGM 118
Query: 99 VLLWSTTILPGAKPPACDQLRNGC-ESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 157
VLLW TTI+PGA+ P+C Q + C AT QL+ LYF GLMS+G+GGIRS SLAFGA+
Sbjct: 119 VLLWLTTIIPGARVPSCAQFSSNCTNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGAD 178
Query: 158 QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 217
QL K D K G L+S+FSWYYV SAS +++TCIVYIQD +GWKVGFGVP V+M+LS
Sbjct: 179 QLSKRDSLKHAGILESFFSWYYVTSSASVFISMTCIVYIQDTMGWKVGFGVPVVLMILST 238
Query: 218 LSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSE 277
LSFFLASP YVK KA S L G +VLVASF+ RR +L + T+E+YHH KGS ++PSE
Sbjct: 239 LSFFLASPIYVKPKAKASWLIGFARVLVASFRKRRIELSSLDTDELYHHRKGSALVVPSE 298
Query: 278 NLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK---------------- 321
+RFLNKAC+ K+PE+DL PDGRAS+P SLCTV+QVEELKALIK
Sbjct: 299 RIRFLNKACVIKNPEEDLMPDGRASDPWSLCTVDQVEELKALIKVIPIWSTGVLVSVNVC 358
Query: 322 --------ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 373
AS+M+RH+T FEIP+GSF F +L+ T+WI LYDR ++PLASKI GKP +L
Sbjct: 359 QNSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMWIALYDRVIIPLASKITGKPTRL 418
Query: 374 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL 433
LK ++GIG+L S ASM AI+E RR IAI EGISD AV MSAMW LP+ L G
Sbjct: 419 GLKQKIGIGILVSAASMAVLAIIERVRREIAIREGISDIPDAVTHMSAMWLLPFYFLLGF 478
Query: 434 AMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWI 493
+ A N +G EF+YTELPKSMSS+AS L GLSAA+LVAS I++ V W+
Sbjct: 479 SEAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIVSNVCGFIGEANQESWV 538
Query: 494 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK-GRVGTAFDD 540
SNINKGHYDYYYWLL +L ANF+YYLAC KAYGP K G+ G DD
Sbjct: 539 SSNINKGHYDYYYWLLYSLGFANFIYYLACSKAYGPCKGGQRGITGDD 586
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224106908|ref|XP_002333609.1| predicted protein [Populus trichocarpa] gi|222837572|gb|EEE75937.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/592 (56%), Positives = 409/592 (69%), Gaps = 50/592 (8%)
Query: 1 MITEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIF 60
MITEPLL +PKGG+R L FIIANEA ER+A+ G + NMILYL REY M+ + I+F
Sbjct: 1 MITEPLL--SSPKGGIRALFFIIANEALERLASFGLSTNMILYLTREYGMDAASGAQILF 58
Query: 61 IWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL----------------------GM 98
+++AA NF+PI+GA LAD+YVGRY MIGFGC LL GM
Sbjct: 59 LYSAAGNFMPIIGAFLADTYVGRYPMIGFGCIASLLTTIYVSGQRIYGSVAILSQTKVGM 118
Query: 99 VLLWSTTILPGAKPPACDQLRNGCES-ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 157
VLLW TTI+PGA P+C Q + C + AT QL+ LYF GLMS+G+GGIRS SLAFGA+
Sbjct: 119 VLLWLTTIIPGATVPSCAQFSSICNNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGAD 178
Query: 158 QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 217
QL K D K G L+S+FSWYYV SAS +++TCIVYIQD +GWKVGFGVP V+M+LS
Sbjct: 179 QLSKRDSLKHAGILESFFSWYYVTSSASVFISMTCIVYIQDTMGWKVGFGVPVVLMILST 238
Query: 218 LSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSE 277
LSFFLASP YVK K S L G +VLVAS++ RR +L T+E+YHH KGS ++PSE
Sbjct: 239 LSFFLASPIYVKPKVKASWLIGFARVLVASYRKRRIELSWLDTDELYHHRKGSALVVPSE 298
Query: 278 NLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK---------------- 321
+RFLNKAC+ K+PE+DL PDGRAS+P +LCTV+QVEELKALIK
Sbjct: 299 RIRFLNKACVIKNPEEDLMPDGRASDPWTLCTVDQVEELKALIKVIPIWSTGVLVSVNVC 358
Query: 322 --------ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 373
AS+M+RH+T FEIP+GSF F +L+ T+WI LYDR ++PLASKI GKP +L
Sbjct: 359 QNSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMWIALYDRVIIPLASKITGKPTRL 418
Query: 374 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL 433
LK ++GIG+L S ASM AI+E RR IAI EGISD AV MSAMW LP+ L G
Sbjct: 419 GLKQKIGIGILVSAASMAVLAIIERVRREIAIREGISDIPDAVTHMSAMWLLPFYFLLGF 478
Query: 434 AMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWI 493
+ A N +G EF+YTELPKSMSS+AS L GLSAA+LVAS I++ V W+
Sbjct: 479 SEAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIVSNVRGFIGEANQESWV 538
Query: 494 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK-GRVGTAFDDKDGM 544
SNINKGHYDYYYWLL++L ANF+YYLAC KAYGP K G+ G D ++G+
Sbjct: 539 SSNINKGHYDYYYWLLSSLGFANFIYYLACSKAYGPCKGGQRGITGDVREGL 590
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141759|ref|XP_002324232.1| predicted protein [Populus trichocarpa] gi|222865666|gb|EEF02797.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/553 (57%), Positives = 396/553 (71%), Gaps = 27/553 (4%)
Query: 1 MITEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIF 60
MITEPLL N KGG+RT+PFI+ANEAFER+A+ G + NMI+YL REY M+ A ++F
Sbjct: 1 MITEPLL--SNGKGGIRTIPFILANEAFERLASFGLSTNMIMYLTREYGMDAAQAAQLLF 58
Query: 61 IWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRN 120
++++ATNF PI+ A+LADSYVGRYRMIGFGC LLGMVLLW TT P A+ P C +
Sbjct: 59 LFSSATNFTPILXAVLADSYVGRYRMIGFGCMASLLGMVLLWLTT-FPEARQPLCVHFSH 117
Query: 121 GCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180
C S + QL+ LY AFG M++G+GGIRSSSLAFGA+QL + +S+F WYYV
Sbjct: 118 SCNSRSTLQLVHLYTAFGFMAIGAGGIRSSSLAFGADQLSITHNLQRARIRESFFRWYYV 177
Query: 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGL 240
V+AS VA+TC+VYIQ+N+GW VGFGVP V+M+LSALSF LASPFYVKSK S + GL
Sbjct: 178 TVTASVFVAMTCVVYIQENMGWMVGFGVPVVLMILSALSFSLASPFYVKSKPKASWITGL 237
Query: 241 TQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGR 300
QV+VASF+NR +L TQAT E+ +H GS+ +PS+ LRF NKAC+ +P+ D+TPDG
Sbjct: 238 AQVVVASFRNRSVELSTQATVEVRYHTTGSILPVPSKRLRFFNKACIVGNPQVDVTPDGN 297
Query: 301 ASNPNSLCTVEQVEELKALIKA------------------------SSMDRHVTPNFEIP 336
A +P SLCTV+QVE+LK LIK S+MDRH+T FEIP
Sbjct: 298 ALDPWSLCTVDQVEDLKTLIKVIPIWSSGMLMFVNVSQGSFIVLQVSTMDRHITSKFEIP 357
Query: 337 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIV 396
+ +F FA+L + +W+ LYDR ++PL SKIKG+P L LK RMGIG+L ST SM A AI
Sbjct: 358 AATFLSFAVLVIVLWVALYDRIIIPLVSKIKGQPVCLGLKKRMGIGILLSTTSMAALAIA 417
Query: 397 EAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 456
E+ RR AI EG SD A + +S LP+L LSG+A AF IGQ EF+YTELPKSMSS
Sbjct: 418 ESVRRETAIKEGFSDRPDAGLHISTFLFLPFLALSGVAEAFTPIGQNEFFYTELPKSMSS 477
Query: 457 IASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMAN 516
+ASTL+G G+S A+LV+S I+ AV D+T G W+ SNINKGHYDYYYWLL +LS+ N
Sbjct: 478 VASTLNGIGMSVASLVSSFIVRAVRDLTTVEGQESWVSSNINKGHYDYYYWLLASLSLVN 537
Query: 517 FLYYLACCKAYGP 529
FLYYLAC K+YGP
Sbjct: 538 FLYYLACSKSYGP 550
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141763|ref|XP_002324234.1| predicted protein [Populus trichocarpa] gi|222865668|gb|EEF02799.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/570 (57%), Positives = 410/570 (71%), Gaps = 24/570 (4%)
Query: 2 ITEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFI 61
I EPLL + KGGLR L FII NEAFER+A G + N+ILYL REY ++ I+++
Sbjct: 11 IKEPLLSSSTTKGGLRALIFIIVNEAFERLANYGLSTNLILYLTREYGIDAVNGAQILYL 70
Query: 62 WTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG 121
+AAT+F P +GA LAD+YVGRY MIGFGC CLLG++LLW TTI+PG +PP C Q +
Sbjct: 71 HSAATSFTPFIGAFLADTYVGRYFMIGFGCIACLLGVILLWLTTIIPGTRPPPCVQFHDS 130
Query: 122 CESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181
CESA+ QL+ LY + GLM++G+GGIRSSSLAFGAEQL K D K G L+S+F WYY
Sbjct: 131 CESASTLQLLLLYSSLGLMAIGAGGIRSSSLAFGAEQLGKRDTLKRAGILESFFRWYYAT 190
Query: 182 VSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLT 241
VS + +A+TCI+YIQDN+GWKVGFG+P V+M+LS LSFFLASP YVKSKA L G
Sbjct: 191 VSVALFLAMTCILYIQDNMGWKVGFGIPVVLMILSTLSFFLASPIYVKSKAKAGWLDGFA 250
Query: 242 QVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRA 301
+VLVASF+NR KL +Q T+++YHH KGS L+PSE LRFLNKAC+ ++P++DL PDGRA
Sbjct: 251 RVLVASFRNRSIKLSSQVTDDVYHHRKGSRLLVPSEKLRFLNKACVIRNPKEDLIPDGRA 310
Query: 302 SNPNSLCTVEQVEELKALIK------------------------ASSMDRHVTPNFEIPS 337
SNP SLCTV++VEELK+LIK AS+MDRH+T F++P+
Sbjct: 311 SNPWSLCTVDEVEELKSLIKVIPIWSTGVLMSINVLQHSFIVLQASTMDRHITSKFQVPA 370
Query: 338 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVE 397
GSF F + + IWI LYDR +PLASKI+GKP +L LK R+GIG+L S+A+M A AI+E
Sbjct: 371 GSFTAFQLFSSVIWIALYDRVAIPLASKIRGKPTRLGLKQRIGIGILSSSAAMAALAIIE 430
Query: 398 AARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSI 457
+ RR AI EG SDD +V+ +SA+W L Y ++G A AF IGQ EF+YTELPKSMSS+
Sbjct: 431 SVRRKTAIKEGFSDDPNSVLHISALWLLLYFFITGFAEAFCGIGQNEFFYTELPKSMSSV 490
Query: 458 ASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANF 517
AS L GLS +NL+ASL++ V + K W+ SNINKGHYDYYYWLL LS+ANF
Sbjct: 491 ASNLFEMGLSVSNLIASLLVTIVRNFFKGNDQESWLSSNINKGHYDYYYWLLAGLSLANF 550
Query: 518 LYYLACCKAYGPFKGRVGTAFDDKDGMEEE 547
+YY AC KAYGP KG+ G A D + + +E
Sbjct: 551 IYYRACSKAYGPCKGQEGNATDGGEALTDE 580
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141757|ref|XP_002324231.1| predicted protein [Populus trichocarpa] gi|222865665|gb|EEF02796.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 320/553 (57%), Positives = 402/553 (72%), Gaps = 27/553 (4%)
Query: 1 MITEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIF 60
MITEPLL N+ KGG+RTLPFI+ANEAFE +A G PN+ILYL REY ++ +++F
Sbjct: 10 MITEPLLSNR--KGGIRTLPFILANEAFESLANYGLFPNLILYLTREYRIDAAKGAHVLF 67
Query: 61 IWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRN 120
+ ++A NF PI+GA LAD+YVGRYRMIGFGC LLGMVLLW TT P A+PP C Q
Sbjct: 68 LLSSAINFTPILGAFLADTYVGRYRMIGFGCMASLLGMVLLWLTT-FPEARPPPCVQFSY 126
Query: 121 GCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180
C+SAT QL+ LY AF +++G+GGIRSSSLAFGA+QL + + +S+FSWYY
Sbjct: 127 DCKSATTLQLLLLYTAFCFLAIGAGGIRSSSLAFGADQLGTSNSLEHARIRESFFSWYYG 186
Query: 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGL 240
V+AS + +T +VYIQDN+GW VGFGVP V+M+LS+LSFF+ASP YVKSK S + GL
Sbjct: 187 IVAASVFLGMTFVVYIQDNIGWMVGFGVPVVLMILSSLSFFVASPSYVKSKPKASWITGL 246
Query: 241 TQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGR 300
QV+V S +NRR KL +QAT+++ +H GSM L+PSE LRFLNKAC+ ++P++DLTPDG+
Sbjct: 247 AQVVVGSIRNRRIKLSSQATDKVDYHTTGSMLLVPSEKLRFLNKACIIRNPQEDLTPDGK 306
Query: 301 ASNPNSLCTVEQVEELKALIK------------------------ASSMDRHVTPNFEIP 336
AS+P SLCTV+QVE+LKALIK AS+M+RH+T FE+P
Sbjct: 307 ASDPWSLCTVDQVEDLKALIKVIPIWSAGMLKSVNVSQGSFLVLQASTMNRHITSKFEVP 366
Query: 337 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIV 396
+ SF +L +T W+ LYDR ++PL SK+ GK L+LK RMGIG+L ST SM A AI
Sbjct: 367 AASFPSIVVLVITTWVVLYDRIIIPLVSKVSGKIVCLNLKQRMGIGILLSTISMAALAIA 426
Query: 397 EAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 456
E+ RR+ AI EG D+ A + +SAMW LPY VLSGLA AFN IGQ EF+YTELPKSMSS
Sbjct: 427 ESFRRATAIKEGFPDNPNAELHISAMWLLPYFVLSGLAEAFNAIGQNEFFYTELPKSMSS 486
Query: 457 IASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMAN 516
+ASTL G GLSAA+LV+S I++AV D TK W+ SNINKGHYDYYYW+LT LS+ N
Sbjct: 487 VASTLQGLGLSAASLVSSFIVSAVRDFTKGEAQESWVSSNINKGHYDYYYWILTILSLVN 546
Query: 517 FLYYLACCKAYGP 529
F+YYL C K YGP
Sbjct: 547 FIYYLVCSKTYGP 559
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507909|ref|XP_003522705.1| PREDICTED: probable peptide transporter At1g52190-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 315/560 (56%), Positives = 399/560 (71%), Gaps = 30/560 (5%)
Query: 1 MITEPLLI--NKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNI 58
+I EPLL N N KGG RTLPFIIANEAFER+A++G PNMILYL REY M+T ATN
Sbjct: 10 VIEEPLLSKQNSNAKGGFRTLPFIIANEAFERLASLGLMPNMILYLTREYGMQTAGATNF 69
Query: 59 IFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQL 118
+ +W+AA+NF P VGA+L+DSYVGRY MI FG LLGMVLLW TT++P +KP C+Q
Sbjct: 70 LLLWSAASNFTPFVGAVLSDSYVGRYSMIAFGSIASLLGMVLLWLTTLIPLSKP-LCNQF 128
Query: 119 RNGCE-SATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177
N C S T L+ L+ +F LMS+G+GGIRSSSLAFG +QL K D K+ G +SYFSW
Sbjct: 129 TNSCNNSPTTIHLLILHSSFALMSIGAGGIRSSSLAFGVDQLSKRD--KNAGIKESYFSW 186
Query: 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLL 237
YY V+ SS++ +T +VYIQDN+GW VGFG+P ++M ++ SFFLASPFYV + ++L
Sbjct: 187 YYAIVAMSSLIGLTVVVYIQDNMGWAVGFGIPVILMFVATASFFLASPFYVMVEVKRNML 246
Query: 238 PGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTP 297
GL QVLVAS+KNR +LP + +YH K S LMP+E LRFLNKAC+ ++ QDLTP
Sbjct: 247 SGLAQVLVASYKNRLLQLPQETENGIYHLEKDSDLLMPTEKLRFLNKACLIRNSLQDLTP 306
Query: 298 DGRASNPNSLCTVEQVEELKALIK------------------------ASSMDRHVTPNF 333
+GRA NP +LCTV+QVEELKALIK ASSMDRH+T NF
Sbjct: 307 EGRALNPWNLCTVDQVEELKALIKIVPIWSTGIMMGVNISQGSLLVLEASSMDRHITSNF 366
Query: 334 EIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAW 393
EIPSGSF F I++L +W+ +YDR ++P+ASKIKG P + K +MGIGLL ++ +
Sbjct: 367 EIPSGSFVTFMIVSLVLWVIIYDRILVPVASKIKGSPACIGAKQKMGIGLLTGCIAIASL 426
Query: 394 AIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS 453
A+VE RR IAI +G D +AVV MSA+W LP +L+GLA A ++GQ EF+ TELP+S
Sbjct: 427 AVVEDIRRKIAIEKGYEDQPQAVVNMSALWLLPRQILNGLAEALGVVGQNEFFLTELPQS 486
Query: 454 MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALS 513
MSS+ASTL+G G S ANLVAS I++ VD++T GG+ W+ SNINKGHYDYYY L+ AL
Sbjct: 487 MSSLASTLNGLGSSVANLVASFILSVVDNVTGGGGHESWLSSNINKGHYDYYYTLICALC 546
Query: 514 MANFLYYLACCKAYGPFKGR 533
NF+Y+L C K+YGP K R
Sbjct: 547 FVNFVYFLYCSKSYGPCKNR 566
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141761|ref|XP_002324233.1| predicted protein [Populus trichocarpa] gi|222865667|gb|EEF02798.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 305/515 (59%), Positives = 372/515 (72%), Gaps = 25/515 (4%)
Query: 40 MILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99
MILYL REY M+ + I+F+++AA NF+PI+GA LAD+YVGRY MIGFGC LLGMV
Sbjct: 1 MILYLTREYGMDAASGAQILFLYSAAGNFMPIIGAFLADTYVGRYPMIGFGCIASLLGMV 60
Query: 100 LLWSTTILPGAKPPACDQLRNGCES-ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQ 158
LLW TTI+PGA P+C Q + C + AT QL+ LYF GLMS+G+GGIRS SLAFGA+Q
Sbjct: 61 LLWLTTIIPGATVPSCAQFSSICNNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGADQ 120
Query: 159 LDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218
L K D K G L+S+FSWYYV SAS +++TC+VYIQ+ +GWKVGFGVP V+M+LS L
Sbjct: 121 LSKRDSLKHAGILESFFSWYYVISSASVFISMTCVVYIQEAMGWKVGFGVPVVLMILSTL 180
Query: 219 SFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSEN 278
SFFLASP YVK KA S L G +VLVASF+ RR +L + T+E+YHH KGS ++PSE
Sbjct: 181 SFFLASPIYVKPKAKASWLIGFARVLVASFRKRRIELSSLDTDELYHHRKGSALVVPSER 240
Query: 279 LRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK----------------- 321
+RFLNKAC+ K+PE+DL PDGRAS+P SLCTV+QVEELKALIK
Sbjct: 241 IRFLNKACVIKNPEEDLMPDGRASDPWSLCTVDQVEELKALIKVIPIWSTGVLVSVNVCQ 300
Query: 322 -------ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLS 374
AS+M+RH+T FEIP+GSF F +L+ T+WI LYDR ++PLASKI GKP +L
Sbjct: 301 NSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMWIALYDRVIIPLASKITGKPTRLG 360
Query: 375 LKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLA 434
LK ++GIG+L S ASM AI+E RR IAI EGISD AV MSAMW LP+ L G +
Sbjct: 361 LKQKIGIGILVSAASMAVLAIIERVRREIAIREGISDIPDAVTHMSAMWLLPFYFLLGFS 420
Query: 435 MAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP 494
A N +G EF+YTELPKSMSS+AS L GLSAA+LVAS I++ V W+
Sbjct: 421 EAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIVSNVRGFIGEANQESWVS 480
Query: 495 SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGP 529
SNINKGHYDYYYWLL++L ANF+YYLAC KAYGP
Sbjct: 481 SNINKGHYDYYYWLLSSLGFANFIYYLACSKAYGP 515
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549914|ref|XP_002516008.1| nitrate transporter, putative [Ricinus communis] gi|223544913|gb|EEF46428.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 295/562 (52%), Positives = 386/562 (68%), Gaps = 24/562 (4%)
Query: 10 KNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFL 69
K+ KGGL T+PFIIANEAFE++++ G PNMI YL ++Y + NIIF+W AATNF+
Sbjct: 26 KSRKGGLITMPFIIANEAFEKVSSYGLLPNMIFYLMKDYGLGVAKGANIIFLWNAATNFM 85
Query: 70 PIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQ 129
P++GA ++DSY+GRY IG G LLG VLLW TT++P +KPP CD + C+S T Q
Sbjct: 86 PLLGAFISDSYLGRYLTIGLGSIFSLLGTVLLWLTTMIPQSKPPLCDLMTQNCKSPTAGQ 145
Query: 130 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVA 189
+ L + +S+G+GGIR SLAFGA+QLD K++ L+SYF WYY + S ++A
Sbjct: 146 ITMLLSSMAFISIGAGGIRPCSLAFGADQLDNKSNPKNERILESYFGWYYASTAISVLIA 205
Query: 190 VTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFK 249
+T IVYIQD+ GW+VGFGVPA+++ LSA FF+ASP Y+K KA+ SLL G QVLV ++K
Sbjct: 206 LTGIVYIQDHHGWRVGFGVPAILVFLSAFLFFIASPLYLKQKASKSLLAGFAQVLVVAYK 265
Query: 250 NRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCT 309
NR+ P ++ YH K S + P+EN+RFLNKAC+ ++ EQDL PDG ASNP SLCT
Sbjct: 266 NRKIPFPPTNSDSKYHRRKNSEYITPTENIRFLNKACIIRNAEQDLAPDGSASNPWSLCT 325
Query: 310 VEQVEELKALIK------------------------ASSMDRHVTPNFEIPSGSFNIFAI 345
+EQVEELKALI+ ASSMDRH++ F++P+GSF F +
Sbjct: 326 IEQVEELKALIRVIPIWSTGIMMSINVSQGSFQVLQASSMDRHLSSKFQVPAGSFATFVV 385
Query: 346 LTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAI 405
+++ IWI LYDRA+LPLA+KIKGKP +L +KLRMGIGL S M IVE RR AI
Sbjct: 386 ISMAIWIVLYDRAILPLATKIKGKPVRLGVKLRMGIGLFLSCMGMVVAGIVENVRRRKAI 445
Query: 406 NEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAG 465
+EG ++ AVVQMSA W P L+G A A N IGQTEFYYTE PKSMSSIA L G G
Sbjct: 446 HEGYLNNPNAVVQMSAFWLAPQYCLNGFAEALNAIGQTEFYYTEFPKSMSSIAGALFGLG 505
Query: 466 LSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK 525
++ ANL+A++I++ V++IT +GG GW+PSNIN+GHYD YYWLL +S N LY+L C
Sbjct: 506 MAVANLLATVILSLVNNITSKGGKVGWVPSNINQGHYDNYYWLLAIMSAVNLLYFLICSW 565
Query: 526 AYGPFKGRVGTAFDDKDGMEEE 547
YGP K ++ D+ +G + E
Sbjct: 566 GYGPCKEQITKVSDEGNGFKHE 587
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743243|emb|CBI36110.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 301/569 (52%), Positives = 398/569 (69%), Gaps = 24/569 (4%)
Query: 3 TEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIW 62
+E +++ KGGL T+PFIIANEAFER+A+ G PNMILYL ++Y++ TNI+F+W
Sbjct: 7 SEQRKMSQRAKGGLITMPFIIANEAFERVASYGLLPNMILYLIQDYHLGVAKGTNILFLW 66
Query: 63 TAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGC 122
+AATNFLP+VGA L+DSY+GR+ IG G T LLGM+LLW T ++P KPP CD L C
Sbjct: 67 SAATNFLPVVGAFLSDSYLGRFLTIGLGSITSLLGMILLWLTAMIPKTKPPHCDLLTQSC 126
Query: 123 ESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182
++ T +Q + LY +F LMS+G+GG+R SLAFGA+QLDK D K++ L+S+FSWYY
Sbjct: 127 KAPTAAQFILLYSSFALMSIGAGGVRPCSLAFGADQLDKRDNPKNERVLESFFSWYYASA 186
Query: 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQ 242
+ S ++A+T IVYIQ +LGW+VGFGVPA++M +AL FFLASPFY+K KA+ SLL G Q
Sbjct: 187 ALSVVIALTGIVYIQVHLGWRVGFGVPAILMFFAALLFFLASPFYIKQKASRSLLTGFVQ 246
Query: 243 VLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRAS 302
VLV ++KNR+ P + T+ YH+ K S ++P++ LRFLNKAC+ + PE+D+ DG AS
Sbjct: 247 VLVVAYKNRKLAFPPRNTDGWYHYSKDSKLVVPTDRLRFLNKACIIRSPERDINSDGLAS 306
Query: 303 NPNSLCTVEQVEELKALIK------------------------ASSMDRHVTPNFEIPSG 338
NP SLCTV+QVEELKALIK A+SMDRHV +F+IP+G
Sbjct: 307 NPWSLCTVDQVEELKALIKVIPMWSTGIMMSINTSNSSFPVLQANSMDRHVFSSFQIPAG 366
Query: 339 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEA 398
S+ +F ++ L +W+ LYDR +LPLASK++GK +L +K RMGIGL S M AIVE
Sbjct: 367 SYAMFLVIVLFLWVALYDRVILPLASKVRGKRVRLGVKQRMGIGLFLSCLGMVVAAIVEN 426
Query: 399 ARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 458
RR AI +G+ ++ + +V MSAMW +P L GLA AFN IGQTEFYY+E PKSMSSIA
Sbjct: 427 VRRRKAIRQGLLNNPQTLVGMSAMWLVPQYCLYGLAEAFNAIGQTEFYYSEFPKSMSSIA 486
Query: 459 STLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 518
+ L G G++ ANL+AS+I++AV+ +T RGG W+ +NINKGHYD YYWLL +S N L
Sbjct: 487 AALFGLGMAVANLLASVILSAVNHLTSRGGKESWVSNNINKGHYDNYYWLLAIMSAINLL 546
Query: 519 YYLACCKAYGPFKGRVGTAFDDKDGMEEE 547
YYL C YGP + D+ ME E
Sbjct: 547 YYLVCSYFYGPCVEQGTKVSDEGKSMEGE 575
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 548 | ||||||
| TAIR|locus:2037452 | 607 | AT1G52190 [Arabidopsis thalian | 0.569 | 0.514 | 0.466 | 2.6e-130 | |
| TAIR|locus:2093442 | 591 | AT3G16180 [Arabidopsis thalian | 0.620 | 0.575 | 0.421 | 2.7e-126 | |
| TAIR|locus:2144281 | 481 | AT5G11570 [Arabidopsis thalian | 0.419 | 0.478 | 0.394 | 3.7e-90 | |
| TAIR|locus:2196800 | 620 | NRT1.7 "nitrate transporter 1. | 0.565 | 0.5 | 0.337 | 2.5e-79 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.558 | 0.513 | 0.342 | 1.2e-77 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.563 | 0.523 | 0.313 | 1.2e-77 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.556 | 0.535 | 0.331 | 2e-77 | |
| TAIR|locus:2035005 | 587 | NRT1.9 "nitrate transporter 1. | 0.552 | 0.516 | 0.315 | 2.5e-77 | |
| TAIR|locus:2172249 | 616 | GTR2 "AT5G62680" [Arabidopsis | 0.556 | 0.495 | 0.308 | 4.1e-75 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.552 | 0.531 | 0.325 | 2.3e-74 |
| TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 743 (266.6 bits), Expect = 2.6e-130, Sum P(2) = 2.6e-130
Identities = 147/315 (46%), Positives = 195/315 (61%)
Query: 10 KNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFL 69
K KGG+ T+PFIIANEAFE++A+ G PNMI+YL R+Y TN++F+W+AA+NF
Sbjct: 19 KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFT 78
Query: 70 PIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG--CESATW 127
P++GA L+DSY+GR+ I + LGMVLLW T +LP KP CD G C S+T
Sbjct: 79 PLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTA 138
Query: 128 SQLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 187
SQL LY AF AFGA+QLD + K++ L+S+F WYY + + +
Sbjct: 139 SQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVL 198
Query: 188 VAVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVAS 247
+A T IVYIQ++LGWK+GFGVPAV+M P YV SL GL Q +VA+
Sbjct: 199 IAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAA 258
Query: 248 FKNRRTKLPTQATE-EMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNS 306
+K R+ LP + Y+H K S PS+ LRFLNKAC+ + E+++ DG A NP
Sbjct: 259 YKKRKLSLPDHHDSFDCYYHMKDSEIKAPSQKLRFLNKACLISNREEEIGSDGFALNPWR 318
Query: 307 LCTVEQVEELKALIK 321
LCT ++VEELKALIK
Sbjct: 319 LCTTDKVEELKALIK 333
|
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| TAIR|locus:2093442 AT3G16180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 709 (254.6 bits), Expect = 2.7e-126, Sum P(2) = 2.7e-126
Identities = 145/344 (42%), Positives = 199/344 (57%)
Query: 2 ITEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFI 61
+ +P+ + KGGL T+PFIIANE FE++A+ G NMILYL +Y + ++F+
Sbjct: 14 LQQPIT-RRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFM 72
Query: 62 WTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRN- 120
W AATNF+P+VGA L+DSY+GR+ I + LLGMV+LW T +LP KP C
Sbjct: 73 WVAATNFMPLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPCVATAGT 132
Query: 121 GCESATWSQLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYV 180
C SAT SQL LY AF AFGA+QLD + K++ L+S+F WYY
Sbjct: 133 NCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYA 192
Query: 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGL 240
S + ++A T IVYIQD+LGWK+GFG+PA++M P YVK + SL GL
Sbjct: 193 SSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSKSLFTGL 252
Query: 241 TQVLVASFKNRRTKLPTQA-TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDG 299
QV+ A++ R LP + + Y+ K S PS+ LRFLNKAC + ++DL DG
Sbjct: 253 AQVVAAAYVKRNLTLPDHHDSRDCYYRLKDSELKAPSDKLRFLNKACAISNRDEDLGSDG 312
Query: 300 RASNPNSLCTVEQVEELKALIKASSM-DRHVTPNFEIPSGSFNI 342
A N LCT +QVE+LKAL+K + + + + SF +
Sbjct: 313 LALNQWRLCTTDQVEKLKALVKVIPVWSTGIMMSINVSQNSFQL 356
|
|
| TAIR|locus:2144281 AT5G11570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 462 (167.7 bits), Expect = 3.7e-90, Sum P(3) = 3.7e-90
Identities = 93/236 (39%), Positives = 135/236 (57%)
Query: 1 MITEPLLINKNP-KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNII 59
M E LL+ + K G+ T+PFI+A++A E++A G PNMIL+L EY M T A NI+
Sbjct: 1 MDQEALLVGRTLLKRGIPTIPFILASQALEKLAYFGLVPNMILFLTVEYGMGTAEAANIL 60
Query: 60 FIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLR 119
F+W+AATNF P+VGA +ADSY GR+ +IGFG L GMVLLW TTI+ P CD+L
Sbjct: 61 FLWSAATNFFPLVGAFIADSYTGRFPLIGFGSSISLTGMVLLWLTTIIR----PECDKLT 116
Query: 120 NGCESATWSQLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTK-SKGALQSYFSWY 178
N C+ T + + LY F AF A+QL ++ + +L++ F+WY
Sbjct: 117 NVCQPTTLLKSVLLYSFFALTAIGAGGVRSSCLAFAADQLQPNQTSRVTTSSLETLFNWY 176
Query: 179 YVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANT 234
Y V + ++ + +V++Q GW++GFGV M P+YV+ + T
Sbjct: 177 YFSVMVACFLSQSLLVFVQTTYGWQIGFGVSVAAMALSVALFFAASPYYVRFQKPT 232
|
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| TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 472 (171.2 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
Identities = 108/320 (33%), Positives = 165/320 (51%)
Query: 8 INKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATN 67
+ K P GG R + FI+ NE ER+ ++G N ++YL + +++E A N+I IW+ TN
Sbjct: 48 VEKKP-GGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTN 106
Query: 68 FLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACD-QLRNGCESAT 126
P+VGA ++D+YVGR++ I F F LLG++ + T P P +C+ Q C
Sbjct: 107 LTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCGGPN 166
Query: 127 WSQLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS 186
Q+ L FG +Q D+ KG + S+F+WYY+ +
Sbjct: 167 KLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKG-VASFFNWYYMTFTVVL 225
Query: 187 IVAVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVA 246
I+ T +VYIQD + W +GF +P +M YV K S+ G+ QV+VA
Sbjct: 226 IITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVA 285
Query: 247 SFKNRRTKLPTQ--ATEEMYHHG-KGSM--RLMPSENLRFLNKACMAKHPEQDLTPDGRA 301
+ K R+ KLP + T Y K S+ +L S R L+KA + E DLTP+G
Sbjct: 286 ARKKRKLKLPAEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVI--EGDLTPEGPP 343
Query: 302 SNPNSLCTVEQVEELKALIK 321
++ LC+V++VEE+K LI+
Sbjct: 344 ADKWRLCSVQEVEEVKCLIR 363
|
|
| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 442 (160.7 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 108/315 (34%), Positives = 166/315 (52%)
Query: 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPI 71
PKGGL T+PFI ANE E++A VGF NMI YL + ++ T A N + + ++ P+
Sbjct: 23 PKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTPL 82
Query: 72 VGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLM 131
+GA +ADS+ GR+ I F +GM LL + I+P +PP C C A +QL
Sbjct: 83 LGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKG-EEVCVVADTAQLS 141
Query: 132 PLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT 191
LY A AFGA+Q D+ D ++ +YF+WYY + A+ ++AVT
Sbjct: 142 ILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTW-NYFNWYYFCMGAAVLLAVT 200
Query: 192 CIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVASFKNR 251
+V+IQDN+GW +G G+P V M Y S L QV VA+F+ R
Sbjct: 201 VLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKR 260
Query: 252 RTKLPTQATEEMYHH---GKGSM--RLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNS 306
+ ++ + + ++ S+ +L ++++ FL+KA + E +L P G+ N
Sbjct: 261 KLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTE-EDNLKP-GQIPNHWR 318
Query: 307 LCTVEQVEELKALIK 321
L TV +VEELK++I+
Sbjct: 319 LSTVHRVEELKSVIR 333
|
|
| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 421 (153.3 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 100/319 (31%), Positives = 151/319 (47%)
Query: 9 NKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNF 68
+K G + PFI+ NE ER+A G N+I Y E + +A + + IW
Sbjct: 49 SKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGTCYI 108
Query: 69 LPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG-CESATW 127
P++GA++ADSY GRY I +GM LL + LP KP AC + C AT
Sbjct: 109 TPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCSPATT 168
Query: 128 SQLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 187
Q + +FGA+Q D D + + S+F+W+Y ++ S
Sbjct: 169 VQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTD-PRERVRKASFFNWFYFSINIGSF 227
Query: 188 VAVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVAS 247
++ T +V++Q+N+GW +GF +P V M P Y K S + + QVLVA+
Sbjct: 228 ISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAA 287
Query: 248 FKNRRTKLPTQA-----TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRAS 302
++ + LP T E GS ++ ++ +FL+KA + E + G S
Sbjct: 288 YRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYE---SKSGAFS 344
Query: 303 NPNSLCTVEQVEELKALIK 321
NP LCTV QVEE+K LI+
Sbjct: 345 NPWKLCTVTQVEEVKTLIR 363
|
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| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 427 (155.4 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 105/317 (33%), Positives = 157/317 (49%)
Query: 9 NKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNF 68
NK G + FI+ NE ER+A G N++ YL N A N + W+
Sbjct: 21 NKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYI 80
Query: 69 LPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWS 128
P++GA +AD+Y+GRY I F + GM LL + +PG KP C+ + C + S
Sbjct: 81 TPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNA--DTCHPNS-S 137
Query: 129 QLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIV 188
Q + A +FGA+Q D+ D + K S+F+W+Y ++ +++
Sbjct: 138 QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENE-KIKKSSFFNWFYFSINVGALI 196
Query: 189 AVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVASF 248
A T +V+IQ N+GW GFGVP V M FY + S L + QV+VA+F
Sbjct: 197 AATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAF 256
Query: 249 KNRRTKLPTQA-----TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASN 303
+ K+P T + + KGS +L+ ++NL+F +KA A + D DG N
Sbjct: 257 RKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKA--AVESQSDSIKDGEV-N 313
Query: 304 PNSLCTVEQVEELKALI 320
P LC+V QVEELK++I
Sbjct: 314 PWRLCSVTQVEELKSII 330
|
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| TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 452 (164.2 bits), Expect = 2.5e-77, Sum P(2) = 2.5e-77
Identities = 98/311 (31%), Positives = 164/311 (52%)
Query: 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGA 74
G + +PFII NE FE++ VG + N+++YL +NM++ A ++ I+ +NF IV A
Sbjct: 22 GWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAA 81
Query: 75 LLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPAC-DQLRNGCESATWSQLMPL 133
L DSY GRY+ + F C LG V + T ++ P C ++ + C + Q+M L
Sbjct: 82 FLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFL 141
Query: 134 YFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI 193
A FGA+Q D +G ++S+F+WY+ + + +V++T I
Sbjct: 142 AGAMVLLVIGAGGIRPCNLPFGADQFDPKTKEGKRG-IESFFNWYFFTFTFAQMVSLTLI 200
Query: 194 VYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVASFKNRRT 253
VY+Q N+ W +G +PA++M YVK KA+ S + +T+V+V + K RR
Sbjct: 201 VYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRRL 260
Query: 254 KLPTQATEEMYHHGKGSMR---LMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTV 310
K P E+Y++ + L +E RFL+K+ + ++ L DG + LC++
Sbjct: 261 K-PV-GPNELYNYIASDFKNSKLGHTEQFRFLDKSAIQTQDDK-LNKDGSPVDAWKLCSM 317
Query: 311 EQVEELKALIK 321
+QVEE+K +I+
Sbjct: 318 QQVEEVKCVIR 328
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| TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 460 (167.0 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 96/311 (30%), Positives = 160/311 (51%)
Query: 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGA 74
G + +PFII NE FE++ +G N+++YL +N+++ A II ++ NF V A
Sbjct: 46 GWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIINAFSGTINFGTFVAA 105
Query: 75 LLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG-CESATWSQLMPL 133
L D+Y GRY+ + C LG ++ T +P P AC + C + Q+ L
Sbjct: 106 FLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPAACGTAADSICNGPSGGQIAFL 165
Query: 134 YFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI 193
AFGA+Q + + +G + S+F+WY+ + + I+++T +
Sbjct: 166 LMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKRG-IDSFFNWYFFTFTFAQILSLTLV 224
Query: 194 VYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVASFKNRRT 253
VY+Q N+ W +G +PAV+M YVK KA+ S L G+ QV+ + K R
Sbjct: 225 VYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRGL 284
Query: 254 KLPTQATEEMYHHGK---GSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTV 310
K Q +Y++ + +L ++ RFL+KA + PE L PDG+ ++P LCT+
Sbjct: 285 KPAKQPWLNLYNYYPPKYANSKLKYTDQFRFLDKAAILT-PEDKLQPDGKPADPWKLCTM 343
Query: 311 EQVEELKALIK 321
+QVEE+K +++
Sbjct: 344 QQVEEVKCIVR 354
|
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| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 104/320 (32%), Positives = 156/320 (48%)
Query: 9 NKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNF 68
NKN G + FI+ E ER+A G + N+I YL ++ NME +A+ + W+
Sbjct: 22 NKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYA 81
Query: 69 LPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWS 128
P++GA +AD+Y+GRY I + GM LL + +PG P + C AT
Sbjct: 82 TPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPTCSGET---CH-ATAG 137
Query: 129 QLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIV 188
Q + A +FGA+Q D D K K + S+F+W+Y ++ +++
Sbjct: 138 QTAITFIALYLIALGTGGIKPCVSSFGADQFDDTD-EKEKESKSSFFNWFYFVINVGAMI 196
Query: 189 AVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVASF 248
A + +V+IQ N+GW G GVP V M FY K S L + QV+VAS
Sbjct: 197 ASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASC 256
Query: 249 KNRRTKLPTQATEEMYHHGK-------GSMRLMPSENLRFLNKACMAKHPEQDLTPDGRA 301
+ + K+P E + + + GS +L ++ L F +KA A E D ++
Sbjct: 257 RKSKVKIPED--ESLLYENQDAESSIIGSRKLEHTKILTFFDKA--AVETESDNKGAAKS 312
Query: 302 SNPNSLCTVEQVEELKALIK 321
S+ LCTV QVEELKALI+
Sbjct: 313 SSWK-LCTVTQVEELKALIR 331
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M817 | PTR6_ARATH | No assigned EC number | 0.4929 | 0.9817 | 0.8863 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.25930001 | hypothetical protein (605 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 548 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 1e-44 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 5e-15 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 2e-11 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 4e-08 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 5e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-04 | |
| PRK09584 | 500 | PRK09584, tppB, putative tripeptide transporter pe | 4e-04 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 0.001 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.002 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 1e-44
Identities = 113/409 (27%), Positives = 172/409 (42%), Gaps = 65/409 (15%)
Query: 84 YRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLG 143
++ I G +G VLL I P P Q+ Y L++LG
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSP---------------VQVALFYIGLYLIALG 45
Query: 144 SGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWK 203
+GGI+ + AFGA+Q D+ +FSW+Y ++A S++A Y+Q N+G+
Sbjct: 46 TGGIKPNVSAFGADQFDETQ----DPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYP 101
Query: 204 VGFGVPAVIMLLSALSFFLASPFYVK--SKANTSLLPGLTQVLVASFKNRRTKLPTQATE 261
+GFG+PAV MLL+ L F L S Y K + + ++ A+ KNR+ +LP +
Sbjct: 102 LGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHW 161
Query: 262 EMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKA--- 318
+ K + R + S+ A + P + V L+A
Sbjct: 162 LYWALEKYNKRSI-SQTKVHTRVAVIFI-------PLPKFWALF--DQQGSVWLLQAILL 211
Query: 319 ----------------------LIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYD 356
+ + +MDR + P FEIP SF F L + I + + D
Sbjct: 212 MLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILD 271
Query: 357 RAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV 416
V PL + K L+L R G+G+ + AIVEA R A G++
Sbjct: 272 FLVYPLL---RLKR-GLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGW-T 326
Query: 417 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAG 465
V + +W LP L +SG+ +A G EF LP SM S+ + LS A
Sbjct: 327 VPLFILWSLPELFISGVGLA----GALEFAPDALPSSMMSLWTLLSAAA 371
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 5e-15
Identities = 57/221 (25%), Positives = 90/221 (40%), Gaps = 33/221 (14%)
Query: 17 RTLPFIIANEAFERMATVGFTPNMILYLCREY----NMETTAATNIIFIWTAATNFLPIV 72
R L I E +ER + G +ILYL + + T AT + + + PI+
Sbjct: 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPII 80
Query: 73 GALLADSYVGRYRMIGFGCFTCLLGMVLL-WSTTILPGAKPPACDQLRNGCESATWSQLM 131
G LAD +G R I G +G ++L S+ PG
Sbjct: 81 GGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGG--------------------- 119
Query: 132 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT 191
LY L+ +G+G + + + E K D + G F+ +Y+ ++ S++A
Sbjct: 120 -LYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG-----FTLFYMGINIGSLIAPI 173
Query: 192 CIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKA 232
+ N GW VGFG+ AV M++ L FL +VK
Sbjct: 174 ITGLLAINYGWHVGFGLAAVGMII-GLVIFLLGRRHVKGIG 213
|
Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-11
Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 26/219 (11%)
Query: 40 MILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99
++LYL ATNI +T P++GAL+ADS++G+++ I + ++G
Sbjct: 10 LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHA 69
Query: 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQL 159
L S +P P + L L++LG+GGI+ AFG +Q
Sbjct: 70 LA-SLGAVPSLGHP-------------LHDALSLVGLA-LIALGTGGIKPCVSAFGGDQF 114
Query: 160 DKGDGTKSKGALQSYFSWYYVFVSASSIVAVT-------CIVYIQDNLGWKVGFGVPAVI 212
++ +FS++Y ++A S+ + + + + FGVP ++
Sbjct: 115 EER----QLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGIL 170
Query: 213 MLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNR 251
M L+ + F + S Y K +++ + + +V + K R
Sbjct: 171 MTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 46/212 (21%), Positives = 87/212 (41%), Gaps = 32/212 (15%)
Query: 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNM--ETTAATNIIFIWTAATNFLPIV 72
L TL F+ E +ER + G + +YL ++ + A I ++A L V
Sbjct: 11 PLFTLFFV---ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSV 67
Query: 73 GALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMP 132
G D G + + G +LG +L A D +
Sbjct: 68 GWWFGDRVWGTKKTMVLGGIVLMLGHFML--------AMSIYPDLI-------------- 105
Query: 133 LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 192
++ G +++GSG +++ + + ++GD + G F+ +Y+ ++ S ++
Sbjct: 106 -FYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGG----FTLFYMSINIGSFISPLL 160
Query: 193 IVYIQDNLGWKVGFGVPAVIMLLSALSFFLAS 224
I +N G+ VGF + AV M++ L+FF
Sbjct: 161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 5e-07
Identities = 52/237 (21%), Positives = 91/237 (38%), Gaps = 35/237 (14%)
Query: 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALL 76
R + +++A + +E + G +ILYL + + A + + + PI+G L
Sbjct: 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFL 68
Query: 77 ADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFA 136
AD +G + G +G V+L ++ I P LY +
Sbjct: 69 ADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSF----------------------LYLS 106
Query: 137 FGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI 196
++ G G +S+ E + D + G FS Y + SI+A Y
Sbjct: 107 LAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGG-----FSLMYAAGNVGSIIAPIACGYA 161
Query: 197 QDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSK--------ANTSLLPGLTQVLV 245
Q+ W +GFG+ AV M+ + F + + ++ A LLP +LV
Sbjct: 162 QEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLV 218
|
Length = 493 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 32/196 (16%)
Query: 27 AFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRM 86
+ +P + L + + + A I+ ++ ++ L+D + GR R+
Sbjct: 9 FLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRV 66
Query: 87 IGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGG 146
+ G LG +LL + L L L+ LG G
Sbjct: 67 LLLGLLLFALGSLLLAFASSLWL-----------------------LLVGRFLLGLGGGA 103
Query: 147 IRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGF 206
+ ++ A AE + +++ + ++LGW+ F
Sbjct: 104 LYPAAAALIAEWF-------PPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLF 156
Query: 207 GVPAVIMLLSALSFFL 222
+ A++ LL AL
Sbjct: 157 LILAILGLLLALLLLF 172
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 36/219 (16%), Positives = 67/219 (30%), Gaps = 31/219 (14%)
Query: 31 MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFG 90
+ P + LYL + + T ++ ++ + L+D + GR R++ G
Sbjct: 10 LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68
Query: 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSS 150
LG++LL S L L L LG G + +
Sbjct: 69 LLLFALGLLLL-----------------------LFASSLWLLLVLRVLQGLGGGALFPA 105
Query: 151 SLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 210
+ A A+ + + + + GW+ F + A
Sbjct: 106 AAALIADWFPPEE-------RGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILA 158
Query: 211 VIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFK 249
++ LL+A+ L P LV ++K
Sbjct: 159 ILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197
|
Length = 346 |
| >gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 42/202 (20%), Positives = 81/202 (40%), Gaps = 29/202 (14%)
Query: 22 IIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYV 81
I + E +ER G M +YL ++ M + + ++A L +G L D +
Sbjct: 26 IFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVL 85
Query: 82 GRYRMIGFGCFTCLLGMVLL-WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLM 140
G R+I G +G L+ WS A +Y +
Sbjct: 86 GTKRVIMLGAIVLAIGYALVAWSG------------------HDAGI-----VYMGMATI 122
Query: 141 SLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL 200
++G+G +++ + + +K D + GA F+ YY+ ++ S ++ ++
Sbjct: 123 AVGNGLFKANPSSLLSTCYEKDD-PRLDGA----FTMYYMSINIGSFFSMLATPWLAAKY 177
Query: 201 GWKVGFGVPAVIMLLSALSFFL 222
GW V F + V ML++ ++F
Sbjct: 178 GWSVAFALSVVGMLITVVNFAF 199
|
Length = 500 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 22/158 (13%)
Query: 322 ASSMDRHVTPNFEIPSG---SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLR 378
A FE+P S N F I+ ++ + L K Q S ++
Sbjct: 311 ADRNVNRQIFGFEVPPAWFQSLNPFFII---LFSPILAALWTKLGRGNK----QPSTPIK 363
Query: 379 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFN 438
+GL+ + + I+ A G+ +S W + VL F
Sbjct: 364 FALGLILAGLG---FLILLLAGIWFGGPSGL---------VSVWWLVLSYVLQSFGELFI 411
Query: 439 MIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLI 476
P ++ S + ++A + +
Sbjct: 412 SPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQV 449
|
Length = 498 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 36/192 (18%), Positives = 60/192 (31%), Gaps = 30/192 (15%)
Query: 31 MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFG 90
G + LYL + A ++ ++ ++G LL+D R ++ G
Sbjct: 189 FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIG 248
Query: 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSS 150
LG++LL A L L A L+ G G +
Sbjct: 249 LLLAALGLLLL-----------------------ALAPSLALLLVALLLLGFGLGFAFPA 285
Query: 151 SLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 210
L +E A + + F S + + D G+ F + A
Sbjct: 286 LLTLASELA-------PPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILA 338
Query: 211 VIMLLSALSFFL 222
+ LL+AL L
Sbjct: 339 ALALLAALLLLL 350
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 548 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.93 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.93 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.93 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.93 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.93 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.93 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.93 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.92 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.91 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.91 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.91 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.91 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.91 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.91 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.9 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.9 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.9 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.9 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.9 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.9 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.9 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.89 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.89 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.89 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.89 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.89 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.89 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.89 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.89 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.89 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.89 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.89 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.88 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.88 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.88 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.88 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.88 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.88 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.88 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.88 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.88 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.87 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.87 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.87 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.87 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.87 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.86 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.86 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.86 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.86 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.86 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.86 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.86 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.86 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.86 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.86 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.86 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.85 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.85 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.84 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.84 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.83 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.83 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.83 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.83 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.83 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.82 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.82 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.82 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.82 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.81 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.8 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.79 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.78 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.78 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.78 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.78 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.78 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.77 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.77 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.77 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.75 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.72 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.72 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.72 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.7 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.7 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.68 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.68 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.68 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.67 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.66 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.66 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.64 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.62 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.62 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.61 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.57 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.57 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.54 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.54 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.5 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.48 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.47 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.46 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.44 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.43 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.41 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.4 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.4 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.4 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.39 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.39 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.38 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.37 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.36 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.36 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.36 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.36 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.36 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.34 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.34 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.34 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.33 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.33 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.32 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.32 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.32 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.31 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.31 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.3 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.3 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.3 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.29 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.29 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.29 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.28 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.27 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.27 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.25 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.25 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.25 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.23 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.22 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.2 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.2 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.18 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.18 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.17 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.16 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.16 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.16 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.16 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.15 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.15 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.15 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.14 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.14 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.12 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.12 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.12 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.12 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.11 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.11 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.11 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.09 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.08 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.08 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.07 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.07 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.07 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.06 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.06 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.05 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.04 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.03 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.02 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.02 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.02 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.02 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.01 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.01 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.97 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.97 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.97 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.96 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.93 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.87 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.86 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.86 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.86 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.85 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.85 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.84 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.82 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.82 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.79 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.78 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.78 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.77 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.7 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.69 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.67 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.66 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.63 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.59 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.56 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.55 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.54 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.51 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.49 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.49 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.49 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.47 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.44 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.4 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.38 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.34 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.29 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.23 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.2 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.19 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.19 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.13 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.13 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.11 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.11 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.07 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.02 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.02 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.99 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.86 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.66 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.63 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.62 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.62 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.55 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.53 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.5 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.42 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.34 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.25 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.23 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.13 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.09 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.8 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.72 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.6 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 96.43 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.4 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.13 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.95 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.78 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.58 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.54 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.38 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 95.18 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 94.83 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 94.67 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 94.49 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 94.31 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 93.82 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 92.2 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 88.6 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 87.3 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 86.96 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 85.41 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 84.05 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 82.89 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-46 Score=398.89 Aligned_cols=510 Identities=39% Similarity=0.690 Sum_probs=449.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Q 008934 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (548)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~ 91 (548)
+.+.|+++.++++.+.+|++++|++...+..|+++++|.+...+.-..+.|.......++++++++|.|+||.+++.++.
T Consensus 32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s 111 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS 111 (571)
T ss_pred eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 67779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCc--ccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccch
Q 008934 92 FTCLLGMVLLWSTTILPGAKPPAC--DQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKG 169 (548)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 169 (548)
++..+|..++..+.++|.+.++.| ..-.+.|...+..+...+..++.+.++|.|+.+|+..++.+||+++.++.++ .
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~-~ 190 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEV-K 190 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchh-h
Confidence 999999999999988999888877 2223357777878888999999999999999999999999999996665444 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHh
Q 008934 170 ALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFK 249 (548)
Q Consensus 170 ~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (548)
.+.+.|+|+|...+.|..++-.+..++.+..||...|.++.++.++++++++...+.|+.++|.++++..+.++++.+.+
T Consensus 191 ~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~ 270 (571)
T KOG1237|consen 191 GIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAF 270 (571)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHH
Confidence 56699999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred hccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHH--------
Q 008934 250 NRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK-------- 321 (548)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 321 (548)
+++...+. +.++................++++|++++....+. .++....+|.+|+.+++|+.+..++
T Consensus 271 k~~~~~~~-~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~---~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~ 346 (571)
T KOG1237|consen 271 KRKAVVSL-DPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDL---KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTT 346 (571)
T ss_pred HHhccCCC-cchhccccccccccccCCcccchhhHhhccCCccc---ccccccCCccCCCceehhhhhhhhhhhHHHHHH
Confidence 99887775 32222111112222334567889999887755433 3455678899999999999999888
Q ss_pred -----------------HhhccCCCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHH
Q 008934 322 -----------------ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLL 384 (548)
Q Consensus 322 -----------------~~~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~ 384 (548)
+.+||+++++++.+|++.++.+..+.+++..|++++...|+.+|+.++++..+...++.+|++
T Consensus 347 i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~ 426 (571)
T KOG1237|consen 347 IIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLV 426 (571)
T ss_pred HHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccch
Confidence 778899988569999999999999999999999999999999999886545789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHH
Q 008934 385 FSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGA 464 (548)
Q Consensus 385 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~ 464 (548)
+..+++...+..+.+|++.... +..+.+++|++|++++|++.|++|.+..++.+|+.++++|++||+.+++++.+
T Consensus 427 ~si~sm~~aa~vE~krl~~~~~-----~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~ 501 (571)
T KOG1237|consen 427 LSILSMAVAGIVEAKRLKTAVS-----LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLL 501 (571)
T ss_pred HHHHHHHHHHHHHHHHhhhhhh-----ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHH
Confidence 9999999999999999888766 22334788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCCCC-CCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 008934 465 GLSAANLVASLIMNAVDDITKRGGNGGWIP-SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGR 533 (548)
Q Consensus 465 ~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~ 533 (548)
..++|+.+..++...+...++. .++|+. +|+|+++.+++||+++....++...|..+.++++.++.+
T Consensus 502 t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~ 569 (571)
T KOG1237|consen 502 TVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK 569 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence 9999999999999998876643 568999 899999999999999999999999999898888765443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=329.11 Aligned_cols=454 Identities=19% Similarity=0.217 Sum_probs=335.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhc----CChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHH
Q 008934 11 NPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYN----METTAATNIIFIWTAATNFLPIVGALLADSYVGRYRM 86 (548)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg----~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~ 86 (548)
..-+|+|.++.++.+|++||++|||+...+..|++.+++ ++++++.-+.+.|....++.+++|||++||++|+||+
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 345689999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCc
Q 008934 87 IGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTK 166 (548)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 166 (548)
+.+|.+++++|.+.++.++ ......+.++.+++++|+|+.+|+..++++|++|++|+
T Consensus 95 I~lGail~~iGh~~L~~~~---------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp-- 151 (498)
T COG3104 95 IVLGAILMAIGHLVLAISS---------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP-- 151 (498)
T ss_pred HHHHHHHHHHHHHHHhccc---------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc--
Confidence 9999999999999998652 01456799999999999999999999999999999995
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCC--CCCCch------
Q 008934 167 SKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKA--NTSLLP------ 238 (548)
Q Consensus 167 ~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~------ 238 (548)
+|..+++.+|.+.|+|+.++|.+.+++.+.+||+..|..+++.+.++++.++..+++...... ...++.
T Consensus 152 ---rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~ 228 (498)
T COG3104 152 ---RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLP 228 (498)
T ss_pred ---ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhh
Confidence 389999999999999999999999999999999999999999999999998888766544321 112211
Q ss_pred hHHHHHHHHHhhc--cCCCCC---c-------chhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCc
Q 008934 239 GLTQVLVASFKNR--RTKLPT---Q-------ATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNS 306 (548)
Q Consensus 239 ~~~~~~~~~~~~~--~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 306 (548)
.....+...+... .....+ . ..+..+..+.+.......+.-+.+....... ...++|.
T Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl----------~~~iFW~ 298 (498)
T COG3104 229 VLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFL----------FAVIFWA 298 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHH----------HHHHHHH
Confidence 1111111111110 000000 0 0000000000000000000000000000000 0123443
Q ss_pred cchHHHHHHHHHHHHHhhccCCCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHH
Q 008934 307 LCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFS 386 (548)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~ 386 (548)
+ .+|..+....+..+..+++.. ++++|++++|++|++.++++.|+.+.+.+|+.++. | +++...|+..|+.++
T Consensus 299 ~--~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~--~--~ps~~~KFalGl~l~ 371 (498)
T COG3104 299 L--YEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN--K--QPSTPIKFALGLILA 371 (498)
T ss_pred H--HHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC--C--CCCcchHHHHHHHHH
Confidence 3 355555555556677777733 49999999999999999999999777777665543 2 389999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHH
Q 008934 387 TASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGL 466 (548)
Q Consensus 387 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~ 466 (548)
+.+++.+........ .+..++|.||+++.|+++++||.+.+|..++++++++|+.+++..+|++.+..
T Consensus 372 g~~fl~l~~~~~~~~------------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~ 439 (498)
T COG3104 372 GLGFLILLLAGIWFG------------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTV 439 (498)
T ss_pred HHHHHHHHHHHHhhc------------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 999999987742211 11356799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008934 467 SAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGP 529 (548)
Q Consensus 467 ~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~ 529 (548)
..|+.++..+.+.-.. +. +..+...+...|+..+.+.++..++.....++.++
T Consensus 440 a~~~~l~g~va~~~~~-~~---------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r 492 (498)
T COG3104 440 AAGQTLGGQVAGLTAV-TD---------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNR 492 (498)
T ss_pred HHHHHhhceecccccc-cc---------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999998888773110 00 00112245677888888887777766666555544
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=327.92 Aligned_cols=452 Identities=12% Similarity=0.145 Sum_probs=313.8
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Q 008934 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (548)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~ 91 (548)
.++|||.++.++..+++||+++|++.+++++|+++++|++..+++++.+.+....++.++++|+++||++||||++.++.
T Consensus 9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~ 88 (489)
T PRK10207 9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA 88 (489)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999449999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhh
Q 008934 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (548)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 171 (548)
+++.++++++.++.+ ....++++|+++++|.|...|+..++++|++|+++ ++|
T Consensus 89 ~~~~~g~~~~~~~~~----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~-----~~~ 141 (489)
T PRK10207 89 IVLAIGYFMTGMSLL----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD-----PRL 141 (489)
T ss_pred HHHHHHHHHHHHhcc----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc-----hhh
Confidence 999999999887541 12345678999999999999999999999999866 237
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceecc--CCCCCCchhHHHHH-----
Q 008934 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKS--KANTSLLPGLTQVL----- 244 (548)
Q Consensus 172 ~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----- 244 (548)
+++++++|+..|+|..+||.+++++.+++||++.|++.++..+++++.+...++.+++. ++.+++.+.....+
T Consensus 142 ~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~ 221 (489)
T PRK10207 142 DGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGS 221 (489)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHH
Confidence 88999999999999999999999999999999999998776666665555554443332 22222221111000
Q ss_pred ---HHHHhhccCCCCCcchhh-----------hh-hcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccch
Q 008934 245 ---VASFKNRRTKLPTQATEE-----------MY-HHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCT 309 (548)
Q Consensus 245 ---~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (548)
........... . .... .+ .++...+.+ ...+-+....+... ...+|. .
T Consensus 222 ~~~~~~~~~~~~~~-~-~~~~~~~~~~~i~~~~f~~~~~~~~~~---~r~r~~~~~~l~~~----------~~~f~~--~ 284 (489)
T PRK10207 222 VVMIFVCAWLMHNV-E-VANLVLIVLSIVVTIIFFREAFKLDKT---GRNKMFVAFVLMLE----------AVVFYI--L 284 (489)
T ss_pred HHHHHHHHHHHhhh-h-HHHHHHHHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHH----------HHHHHH--H
Confidence 00000000000 0 0000 00 000000000 00000000000000 001111 1
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHH
Q 008934 310 VEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTAS 389 (548)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~ 389 (548)
.+|......++..+.++.... ++.+++++++++|++.+++..|+.+ .+++|+.+|+.++++..++.+|+++.+++
T Consensus 285 ~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~----~l~~rl~~r~~~~~~~~k~~~G~~l~~~~ 359 (489)
T PRK10207 285 YAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPILA----GIYTHLGSKGKDLSMPMKFTLGMFLCSLG 359 (489)
T ss_pred HHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHHH----HHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 223222233322334555443 6789999999999999999999854 44556555543478999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHH
Q 008934 390 MTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAA 469 (548)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g 469 (548)
++.++...... .+. ..+++.||+++.+++.++||++.+|+.++++++.+|++++|.++|++++.+++|
T Consensus 360 ~~~~~~~~~~~---------~~~---~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig 427 (489)
T PRK10207 360 FLTAAAAGMWF---------ADA---QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAA 427 (489)
T ss_pred HHHHHHHHHhh---------cCC---CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 87765433100 000 123578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008934 470 NLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF 530 (548)
Q Consensus 470 ~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 530 (548)
+.+|..+...... .. ...... ..++.+..+|..+++++++..++++++.++.++.
T Consensus 428 ~~lg~~l~~~~~~-~~-~~~~~~----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~ 482 (489)
T PRK10207 428 FLLGGYVATFTAV-PD-NITDPL----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM 482 (489)
T ss_pred HHHHHHHHHHhcc-cc-ccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876531 00 000000 0123467788888888887777777776666554
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=319.27 Aligned_cols=437 Identities=15% Similarity=0.163 Sum_probs=313.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHh--hcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHH
Q 008934 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCRE--YNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFG 90 (548)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~ 90 (548)
.+++|.++.++..+++|++++|++.++++.|++++ +|+++.+++++.+.+.++..++++++|+++||++||||++.++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 46789999999999999999999999999999988 9999999999999999999999999999999944999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchh
Q 008934 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGA 170 (548)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (548)
.++.+++.+++++++ +.+.+.+++.+.|+|.|...|+..++++|++|++++ ++
T Consensus 86 ~~~~~~g~~~~~~~~-----------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~----~~ 138 (475)
T TIGR00924 86 GIVLMLGHFMLAMSI-----------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM----PR 138 (475)
T ss_pred HHHHHHHHHHHHhcc-----------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc----cc
Confidence 999999988888654 456788899999999999999999999999997653 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchh----HHH----
Q 008934 171 LQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPG----LTQ---- 242 (548)
Q Consensus 171 r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~---- 242 (548)
|+++++++|+..|+|+++||.+++++.+++||++.|.+.++..+++.+.+...++.+++.++++++.++ ..+
T Consensus 139 r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (475)
T TIGR00924 139 RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLA 218 (475)
T ss_pred ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHH
Confidence 788999999999999999999999999989999999998877776666655555444322221111110 000
Q ss_pred ---HHHHHHhhccCCCCCcchhhh---------------hhcCCCCcccCCcc--hhhhHHhhhhhcCCCCCCCCCCCCC
Q 008934 243 ---VLVASFKNRRTKLPTQATEEM---------------YHHGKGSMRLMPSE--NLRFLNKACMAKHPEQDLTPDGRAS 302 (548)
Q Consensus 243 ---~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~ 302 (548)
.+...++.............. ..++..+. ..... ....+.... .
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~l~~~~---------------~ 282 (475)
T TIGR00924 219 LLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDA-VARNKMYAYIVLFLEA---------------V 282 (475)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCH-HHHhHHHHHHHHHHHH---------------H
Confidence 000001100000000000000 00000000 00000 000000000 0
Q ss_pred CCCccchHHHHHHHHHHHHHhhccCCCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHH
Q 008934 303 NPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIG 382 (548)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG 382 (548)
..| +...|..+...++..+.+|..++ ++.+|+++++++|++.++++.|+.+. ++.++.+|..+++...++.+|
T Consensus 283 ~~~--~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~----~~~~l~~~~~~~~~~~k~~~G 355 (475)
T TIGR00924 283 VFW--VLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAM----IWTRLGRKGKDPTTPLKFTLG 355 (475)
T ss_pred HHH--HHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHH----HHHHHHhCCCCCCcHHHHHHH
Confidence 112 22345555555555666777765 78899999999999999999998654 344444432226777789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHH
Q 008934 383 LLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS 462 (548)
Q Consensus 383 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~ 462 (548)
+++.++++..+++.... . + +..++|.||+++.+++.++||.+..|..++++++.+|+++||+++|++
T Consensus 356 ~~l~~~~~~~~~~~~~~----~------~---~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~ 422 (475)
T TIGR00924 356 MLFCGASFLTFAASIWF----A------D---AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMW 422 (475)
T ss_pred HHHHHHHHHHHHHHHhh----c------C---CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999988765210 0 0 012469999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008934 463 GAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 528 (548)
Q Consensus 463 ~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 528 (548)
.+...+|+.+++.+........ ++..+|...+++.++..++.+...++.+
T Consensus 423 ~l~~~~g~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
T TIGR00924 423 FLAQAMGSLLGGYLATFGAVPQ----------------GVTGVFGKIGLVTLLVGVVMALMVPWLN 472 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhccc----------------chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877643211 1344566667666666666666555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=310.34 Aligned_cols=437 Identities=15% Similarity=0.175 Sum_probs=306.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Q 008934 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (548)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~ 92 (548)
-+|+|.++.++..+++|++++|++..+++.|+++++|+++.+++.+.+.+....+++++++|+++||++||||++.++.+
T Consensus 5 ~~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~i 84 (493)
T PRK15462 5 ASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGAL 84 (493)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999999995599999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhH
Q 008934 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (548)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (548)
+..++.+++.... .+...+.++..+..+|.|...++.+++++|++|+++ ++|.
T Consensus 85 l~~lg~lll~~~~----------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~-----~~R~ 137 (493)
T PRK15462 85 LMAIGHVVLGASE----------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTD-----PRRD 137 (493)
T ss_pred HHHHHHHHHHHhh----------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCC-----cccc
Confidence 9999887665422 012334555667778889999999999999999865 3489
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCC-CCCCch--hHHH-----H-
Q 008934 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKA-NTSLLP--GLTQ-----V- 243 (548)
Q Consensus 173 ~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~--~~~~-----~- 243 (548)
++++++|...|+|+.++|.+.+++.+.+||++.|.++++.++++++.++..++.+.+... ..++.+ +... +
T Consensus 138 sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (493)
T PRK15462 138 GGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLL 217 (493)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999887777777766665544433210 111111 1000 0
Q ss_pred HHH----HHhhccCCCCCcchhh--------------hhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCC
Q 008934 244 LVA----SFKNRRTKLPTQATEE--------------MYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPN 305 (548)
Q Consensus 244 ~~~----~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 305 (548)
+.. .+......... .... .+.... ...+.-+......... ...++|
T Consensus 218 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~er~r~~~~~~l~~----------~~~~Fw 281 (493)
T PRK15462 218 VLLVATPALITVLFWKEW-SVYALIVATIIGLGVLAKIYRKAE-----NQKQRKELGLIVTLTF----------FSMLFW 281 (493)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHhhHHHHHHHHH----------HHHHHH
Confidence 000 00000000000 0000 000000 0000000000000000 011344
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHH
Q 008934 306 SLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLF 385 (548)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l 385 (548)
.. .+|..+...++..+.+|++++ ++.+|++++|++|++.++++.|+. ..++.|+.+++++++...|+.+|+++
T Consensus 282 ~~--~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~----a~lw~~l~~~~~~~s~~~Kfa~g~~~ 354 (493)
T PRK15462 282 AF--AQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFL----AWVVKESVAGNRTVRIWGKFALGLGL 354 (493)
T ss_pred HH--HHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHH----HHHHHHHhcCCCCCCcHHHHHHHHHH
Confidence 32 577777778888899999987 899999999999999999999984 44566664333348899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHH
Q 008934 386 STASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAG 465 (548)
Q Consensus 386 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~ 465 (548)
.+++++++...... . ++ ...+|.+|++..++++++||.+.+|..++++.+.+|++.+|++||++.+.
T Consensus 355 ~g~~f~~l~~~~~~---~-------~~---~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~ 421 (493)
T PRK15462 355 MSAGFCILTLSARW---S-------AM---YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLL 421 (493)
T ss_pred HHHHHHHHHHHHhh---c-------CC---CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 99999988765411 0 00 01368999999999999999999999999999999999999999999875
Q ss_pred H-HHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHH
Q 008934 466 L-SAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMAN 516 (548)
Q Consensus 466 ~-~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~ 516 (548)
. .+|+.++..+.+..... +..+-...+-+..+|..+|...+.++++.
T Consensus 422 ~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 422 SGAIANYLAGVIADQTSQA----SFDASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred HHHHHHHHHHHHHHHhccc----cCCccccccchhhhHHHHHHHHHHHHHHH
Confidence 4 68888887776654311 00000000001124666777777666555
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=304.97 Aligned_cols=455 Identities=13% Similarity=0.183 Sum_probs=309.1
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 008934 5 PLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRY 84 (548)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk 84 (548)
|..+.+.. +++|.++.++..+++|++++|++..+++.|+++++|+++++++++.+.+.......++++|+++||++|||
T Consensus 10 ~~~~~~~~-~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r 88 (500)
T PRK09584 10 ESVSLNAF-KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK 88 (500)
T ss_pred CCCChhhh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 44443333 56788999999999999999999999999999999999999999999888888888889999999933999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCC
Q 008934 85 RMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDG 164 (548)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 164 (548)
+++.++.++..++..++.++. .+.+.+.++++++++|.|...++..++++|++|+++
T Consensus 89 ~~~~~g~~~~~ig~~l~~~~~----------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~- 145 (500)
T PRK09584 89 RVIMLGAIVLAIGYALVAWSG----------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD- 145 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc-
Confidence 999999999999988887653 034557788999999999999999999999998765
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceecc--CCCCCCchhH--
Q 008934 165 TKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKS--KANTSLLPGL-- 240 (548)
Q Consensus 165 ~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~-- 240 (548)
++|+++++++|+..|+|+.+||.+++++.+++||++.|.+.++..+++++.+....+.++++ +++.++.+..
T Consensus 146 ----~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (500)
T PRK09584 146 ----PRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKL 221 (500)
T ss_pred ----hhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhH
Confidence 33667899999999999999999999999999999999998876666665554443332222 2222222211
Q ss_pred H----HHHHHHHhhcc-CCCCCcchhhh-----------hhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCC
Q 008934 241 T----QVLVASFKNRR-TKLPTQATEEM-----------YHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNP 304 (548)
Q Consensus 241 ~----~~~~~~~~~~~-~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (548)
. ........... ...++ ..... +..... .....+..+.+....+... ...+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----------~i~f 288 (500)
T PRK09584 222 LLTIVGVVALIAIATWLLHNQE-IARMALGVVALGIVVIFGKEAF--AMKGAARRKMIVAFILMLE----------AIIF 288 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHH----------HHHH
Confidence 0 00000000000 00000 00000 000000 0000000000000000000 0011
Q ss_pred CccchHHHHHHHHHHHHHhhccCCCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHH
Q 008934 305 NSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLL 384 (548)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~ 384 (548)
|.. ..|.......+..+..+..+. ++.+|+++++++|++.+++..|+.+. +++|+.+| ++..+++.+|++
T Consensus 289 ~~~--~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~----~~~~l~~r---~~~~~~~~~G~~ 358 (500)
T PRK09584 289 FVL--YSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAA----IYNKMGDR---LPMPHKFAIGMV 358 (500)
T ss_pred HHH--HHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHH----HHHHhCcC---CCcHHHHHHHHH
Confidence 111 222222222222334455554 67899999999999999999998554 46677666 778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHH
Q 008934 385 FSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGA 464 (548)
Q Consensus 385 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~ 464 (548)
+.+++++.+...... . ++...++.+|+++.+++.++||++.+|..++++.+.+|+++||.++|++.+
T Consensus 359 l~~l~f~~l~~~~~~-------~------~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l 425 (500)
T PRK09584 359 LCSGAFLVLPLGAKF-------A------NDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFL 425 (500)
T ss_pred HHHHHHHHHHHHHHh-------c------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999999998775411 0 011346888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008934 465 GLSAANLVASLIMNAVDDITKRGGNGGWIPS-NINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF 530 (548)
Q Consensus 465 ~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 530 (548)
...+|+.++..+.+.... . .-..+ ....+.+..+|...++++++..++.+...++.++.
T Consensus 426 ~~a~g~~~~g~~~~~~~~--~-----~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~ 485 (500)
T PRK09584 426 TTAGAALIAGYVANLMAV--P-----DNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM 485 (500)
T ss_pred HHHHHHHHHHHHHHHhcc--c-----cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888764321 0 00000 01112367788888877776666666666655544
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-27 Score=257.29 Aligned_cols=335 Identities=21% Similarity=0.382 Sum_probs=246.3
Q ss_pred HHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCC
Q 008934 31 MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGA 110 (548)
Q Consensus 31 ~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~ 110 (548)
++|||+...+.+|+++.+|++++++..+...+....++.++++|+++|+++||+|++.++.++..+|..++++++ .|..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a-~~~~ 79 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGA-IPSS 79 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-Cccc
Confidence 478999999999999999999999999999999999999999999999999999999999999999999888765 2220
Q ss_pred CCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 008934 111 KPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV 190 (548)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp 190 (548)
....+....+++.++.++|.|+.+|+..++.+|+++++++ ++|.+.++++|+++|+|+.+++
T Consensus 80 --------------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~----~~~~s~F~~fY~~iNiGSlis~ 141 (654)
T TIGR00926 80 --------------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL----SLRSRFFSFFYFAINAGSLIST 141 (654)
T ss_pred --------------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch----hHHHHHHHHHHHHHHHHHHHHH
Confidence 0011345577889999999999999999999999987554 4589999999999999999999
Q ss_pred HHHHHhhhc-------cCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccCCCCCcchhhh
Q 008934 191 TCIVYIQDN-------LGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEM 263 (548)
Q Consensus 191 ~i~~~l~~~-------~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (548)
++.+++.+. .+|..+|.+++++++++++++....++++++++..+++.+..++++.+.+++.....+.....+
T Consensus 142 ~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~~~~~~ 221 (654)
T TIGR00926 142 IITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEHWPLHW 221 (654)
T ss_pred HHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcccchhH
Confidence 999999744 3699999999999999999888888888777777776777777777777654332211000111
Q ss_pred hhcCCCCccc-CCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCceecCcccch
Q 008934 264 YHHGKGSMRL-MPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNI 342 (548)
Q Consensus 264 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~~~~~~~ 342 (548)
.+........ ......+.+....+. . ....+|.. ..|..+.. .+++..++.+++ ++.+|+++++.
T Consensus 222 ld~a~~~~~~~~V~evkrll~il~l~-i---------~~~ifw~~--~~Q~~s~~-~~qa~~m~~~l~-g~~ip~~~lq~ 287 (654)
T TIGR00926 222 LDYAKDKHDIRMIRSTKRLLRVLVLF-I---------PLPMFWAL--FDQQGSRW-TLQATRMDGDVG-GFEIQPDQMQV 287 (654)
T ss_pred HHHhccccccchHHHHHHHHHHHHHH-H---------HHHHHHHH--HhcchhHH-HHHHHHhcCccC-CEecCHHHHHH
Confidence 1110000000 000000000000000 0 00122211 12222222 223555666665 68899999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008934 343 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARR 401 (548)
Q Consensus 343 ~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~ 401 (548)
+|++.++++.|+++..++|..+|...+ +++..++.+|++++++++.++...+..++
T Consensus 288 ~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~ 343 (654)
T TIGR00926 288 VNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVN 343 (654)
T ss_pred HHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998888988776444 78999999999999999999988877655
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-23 Score=217.41 Aligned_cols=377 Identities=12% Similarity=0.038 Sum_probs=250.3
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
.|.+..+....++..++.....+.++.|+++++|.|+.+.+++.+.+.++..+++++.|+++||+ ||||++..+.++..
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHH
Confidence 46677777788889999888999999999999999999999999999999999999999999996 99999999998888
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
++...+.++..... ....+...+++.|+++|+|.+...++..+++.|.+|+++ |++++
T Consensus 93 ~~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~-------r~~~~ 150 (399)
T PRK05122 93 LSGLLYLLAGLLAA---------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH-------TGRVI 150 (399)
T ss_pred HHHHHHHHhhhhhc---------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh-------hccch
Confidence 77666554331100 001145678899999999999999999999999998844 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccCCC
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKL 255 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (548)
++.....++|.++||.+++++.++.||+..+.+.++..++..+. ....++ +++++++..+..+.+ ++
T Consensus 151 ~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~----~~----- 217 (399)
T PRK05122 151 SWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLL-ARPRPA---VPPVKGERLPFRRVL----GR----- 217 (399)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH-HhcCCC---CCCCCccchhHHHHH----HH-----
Confidence 99888899999999999999999999999887766544333222 111111 111111111110000 00
Q ss_pred CCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCcee
Q 008934 256 PTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEI 335 (548)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i 335 (548)
.+. ....+.-.. +........... ...+.+..
T Consensus 218 -------~~~-----------~~~~~~~~~----------------------~~~~~~~~~~~~---~~~~~~~~----- 249 (399)
T PRK05122 218 -------VWP-----------YGMGLALAS----------------------IGFGTIATFITL---YYAARGWD----- 249 (399)
T ss_pred -------HHH-----------HHHHHHHHH----------------------HHHHHHHHHHHH---HHHHcccc-----
Confidence 000 000000000 000000000000 00011110
Q ss_pred cCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccc
Q 008934 336 PSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRA 415 (548)
Q Consensus 336 ~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (548)
..........+..++ ..+..+++.+| .++++.+..+.++.++++..+....
T Consensus 250 ~~~~~~~~~~~~~~~--------~~~~~g~l~~r---~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 300 (399)
T PRK05122 250 GAALALTLFGVAFVG--------ARLLFGNLINR---LGGLRVAIVSLLVEILGLLLLWLAP------------------ 300 (399)
T ss_pred cchHHHHHHHHHHHH--------HHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhc------------------
Confidence 001111111111111 22334444444 5555667777777777776665543
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCC
Q 008934 416 VVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPS 495 (548)
Q Consensus 416 ~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~ 495 (548)
+.+.+++..++.|++.+...|.......+..|++.||+++|+++....+|..+++.+.+.+.+..
T Consensus 301 ----~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------- 365 (399)
T PRK05122 301 ----SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF----------- 365 (399)
T ss_pred ----cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------
Confidence 45566677889999999888888777888999999999999999999999999999988866422
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 008934 496 NINKGHYDYYYWLLTALSMANFLYYLACCK 525 (548)
Q Consensus 496 ~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~ 525 (548)
++...|+..+++.++++++.+...+
T Consensus 366 -----g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 366 -----GYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2567788888887877766655433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=221.41 Aligned_cols=373 Identities=14% Similarity=0.115 Sum_probs=249.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Q 008934 20 PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99 (548)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~ 99 (548)
++++...++.+++++.+.++++.|+++++|+|+.+.|++.+...+...+..+++|+++||+ |||+++..+.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 6777889999999999999999999999999999999999999999999999999999996 999999999999999988
Q ss_pred HHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHH
Q 008934 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY 179 (548)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 179 (548)
++..++ +.+.+++.|+++|++.+...|...+++.|.+|++ +|++++++.+
T Consensus 92 ~~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~~~a~~~~~ 141 (400)
T PRK11646 92 TMAIAH-----------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPH-------QRGRFFSLLM 141 (400)
T ss_pred HHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHH
Confidence 887655 6788889999999999988899999999999974 4899999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccCCCCCcc
Q 008934 180 VFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQA 259 (548)
Q Consensus 180 ~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (548)
...++|..+||.+++++. .+||++.|++.++..++..+......++.+.+ +..++. .+.....+++++...
T Consensus 142 ~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~---- 212 (400)
T PRK11646 142 MQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLS-TVRTPV---REGMTRVLRDKRFVT---- 212 (400)
T ss_pred HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccccc-ccchhh---HHHHHHHHcCchHHH----
Confidence 999999999999999998 67999999988776665544333333321111 111111 011111111111000
Q ss_pred hhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCceecCcc
Q 008934 260 TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGS 339 (548)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~~~~ 339 (548)
......... +...+..... ....... + +.....+.
T Consensus 213 -----------------~~~~~~~~~----------------------~~~~~~~~~~----p~~~~~~-~-~~~~~~g~ 247 (400)
T PRK11646 213 -----------------YVLTLTGYY----------------------MLAVQVMLML----PIMVNDI-A-GSPSAVKW 247 (400)
T ss_pred -----------------HHHHHHHHH----------------------HHHHHHHHhh----hhhHHhh-c-CCchHHHH
Confidence 000000000 0000000000 0000000 0 00000011
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccc
Q 008934 340 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM 419 (548)
Q Consensus 340 ~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (548)
+...+.+..+.. ..+.. +..+|+ .+..+.+..+.++.+++++.+...+
T Consensus 248 l~~~~~~~~~~~-------~~~~~-~~~~~r--~~~~~~~~~~~~~~~~~~~~l~~~~---------------------- 295 (400)
T PRK11646 248 MYAIEACLSLTL-------LYPIA-RWSEKR--FRLEHRLMAGLLIMSLSMFPIGMVS---------------------- 295 (400)
T ss_pred HHHHHHHHHHHH-------HHHHH-HHHHHh--cchhHHHHHHHHHHHHHHHHHHHhh----------------------
Confidence 222222222211 11222 222221 4444566778878887777665544
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCC
Q 008934 420 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK 499 (548)
Q Consensus 420 s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~ 499 (548)
+.+++.....+.+++++...|...+.+.+.+|++.||+++|+.++..++|..+|+.+.|.+.+.++..
T Consensus 296 ~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~------------ 363 (400)
T PRK11646 296 NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKAL------------ 363 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhc------------
Confidence 45555666678899999999999999999999999999999999999999999999999987654210
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 008934 500 GHYDYYYWLLTALSMANFLYYL 521 (548)
Q Consensus 500 ~~~~~~f~~~~~~~~v~~~~~~ 521 (548)
+.....|+..+.+.++..+...
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~ 385 (400)
T PRK11646 364 NQPELPWMMLGIIGLITLLALY 385 (400)
T ss_pred CCcchHHHHHHHHHHHHHHHHH
Confidence 1123445555666666655443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-23 Score=218.10 Aligned_cols=376 Identities=11% Similarity=0.051 Sum_probs=246.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Q 008934 14 GGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT 93 (548)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 93 (548)
++|..++.+....++.....|...+.+| .+.+++|+|+.+.+++.+.+.++..+++++.|+++||+ ||||++..+.++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 83 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVL 83 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence 3455566655556665555554444455 46889999999999999999999999999999999996 999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHH
Q 008934 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (548)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (548)
..++.+.+..++ +.+.+++.|+++|++.+...+...+++.|.+|+++ |++
T Consensus 84 ~~~~~~~~~~~~-----------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~-------r~~ 133 (390)
T PRK03545 84 FIASHVLSALAW-----------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK-------KAQ 133 (390)
T ss_pred HHHHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh-------hhh
Confidence 999988888766 78889999999999999989999999999999844 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccC
Q 008934 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRT 253 (548)
Q Consensus 174 ~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (548)
++++.....++|..++|.+++.+.++.|||+.|++.++..++..+......|+.++++ +++.++ ....++++..
T Consensus 134 ~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~ 207 (390)
T PRK03545 134 ALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEH--SGSLKS----LPLLFRRPAL 207 (390)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--cchHHH----HHHHHhCcHH
Confidence 9999999999999999999999999899999999988766655444333333221111 111111 1111111110
Q ss_pred CCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCc
Q 008934 254 KLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNF 333 (548)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 333 (548)
.. .+.-.... ...... ....+ ........+
T Consensus 208 ~~------------------------~~~~~~~~---------------------~~~~~~-~~~~~-~~~l~~~~g--- 237 (390)
T PRK03545 208 VS------------------------LYLLTVVV---------------------VTAHFT-AYSYI-EPFVQQVAG--- 237 (390)
T ss_pred HH------------------------HHHHHHHH---------------------HHHHHH-HHHHH-HHHHHHhcC---
Confidence 00 00000000 000000 00000 000111111
Q ss_pred eecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCc
Q 008934 334 EIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDL 413 (548)
Q Consensus 334 ~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (548)
.+......+.. ...+.+.....+.+++.+| .+. +.+..+..+.+++...+....
T Consensus 238 -~s~~~~~~~~~-----~~~~~~~~g~~~~g~l~dr---~~~-~~~~~~~~~~~~~~~~l~~~~---------------- 291 (390)
T PRK03545 238 -LSENFATLLLL-----LFGGAGIIGSVLFSRLGNR---HPS-GFLLIAIALLLVCLLLLLPAA---------------- 291 (390)
T ss_pred -CCccHHHHHHH-----HHHHHHHHHHHHHHHHhhc---cch-hHHHHHHHHHHHHHHHHHHHh----------------
Confidence 22221111111 1111222233445566555 443 345556555555554433222
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 008934 414 RAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWI 493 (548)
Q Consensus 414 ~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~ 493 (548)
.+.+.++...++.|++.+...+.......+..| +.||.++|+.+...++|..+|+.+.|.+.+..
T Consensus 292 -----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~--------- 356 (390)
T PRK03545 292 -----NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL--------- 356 (390)
T ss_pred -----chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 145666777888899888777777788878777 57899999999999999999999999876422
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 008934 494 PSNINKGHYDYYYWLLTALSMANFLYYLACCK 525 (548)
Q Consensus 494 ~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~ 525 (548)
++...|+..+++.++++++++...+
T Consensus 357 -------g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 357 -------GLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred -------ChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 2467788888888888877765553
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-23 Score=217.87 Aligned_cols=356 Identities=11% Similarity=0.043 Sum_probs=238.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Q 008934 14 GGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT 93 (548)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 93 (548)
+.+|+++.++...++...+++.+.++++.|+++++|+|+.++|++.+.+.+...+.+++.|+++||+ |||+++.++.++
T Consensus 4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~ 82 (395)
T PRK10054 4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA 82 (395)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence 4468888888899999999999999999999999999999999999999999999999999999996 999999999998
Q ss_pred HHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHH
Q 008934 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (548)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (548)
..++.+++.+++ +.+.+++.+.+.+.+.+...++..++..|.+|++ +|++
T Consensus 83 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~ 132 (395)
T PRK10054 83 FASGFIAIPLVN-----------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSST-------SKTK 132 (395)
T ss_pred HHHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh-------HHHH
Confidence 888888777765 5667777788888888888888999999999873 4899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccC
Q 008934 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRT 253 (548)
Q Consensus 174 ~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (548)
++++.+...++|.++||.+++++.+ .+|+.+|++.+++.++..+......++.+++++++++ .. .+ ....++++..
T Consensus 133 ~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~~ 208 (395)
T PRK10054 133 IFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATETG-SV-WS-PSVLLQDKAL 208 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccccccchh-hh-hh-hhhhccCcee
Confidence 9999999999999999999999875 6999999988877666654443332222111111000 00 00 0000111100
Q ss_pred CCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCc
Q 008934 254 KLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNF 333 (548)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 333 (548)
. .......+.... ..........+.....+..
T Consensus 209 ~--------------------~~~~~~~l~~~~-----------------------~~~~~~~~~~~~~~~~~~~----- 240 (395)
T PRK10054 209 L--------------------WFTCSGFLASFV-----------------------SGAFASCISQYVMVVADSD----- 240 (395)
T ss_pred h--------------------HHHHHHHHHHHH-----------------------HHHhhhhHHHHHHHhcccc-----
Confidence 0 000000000000 0000000000000000111
Q ss_pred eecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCc
Q 008934 334 EIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDL 413 (548)
Q Consensus 334 ~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (548)
.+......+.....+. .....+..+++.+| .+++..+.+|+++.++++.......
T Consensus 241 -~~~~~~g~~~~~~~~~-----~~~~~~~~g~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~---------------- 295 (395)
T PRK10054 241 -FAEKVVAVVLPVNAAM-----VVSLQYSVGRRLNA---ANIRPLMTAGTLCFVIGLVGFIFSG---------------- 295 (395)
T ss_pred -hHHHHHHHHHHhhhhh-----eeeehhHHHHHHcc---CCchhHHHHHHHHHHHHHHHHHHcc----------------
Confidence 1111111111111111 11122334454455 5666677788888877776655432
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008934 414 RAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDI 483 (548)
Q Consensus 414 ~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~ 483 (548)
.+.+.+....++.++|++...|..++.+.+.+|++.+|++.+..+ ...+|..+||.+.|.+.+.
T Consensus 296 -----~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~ 359 (395)
T PRK10054 296 -----NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT 359 (395)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 145555667889999999999999999999999999999998765 5679999999999997753
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-23 Score=214.56 Aligned_cols=374 Identities=13% Similarity=0.039 Sum_probs=246.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
.+.++.+.+..++..++.....+.+|.|+++++|+|+.+.|++.+.+.+...+++++.|+++||+ ||||++.++.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~ 92 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACG 92 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHH
Confidence 46667777788888888888899999999999999999999999999999999999999999996 99999999988777
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
++.+........+. ....+.+.++++|+++|++.+...+...+++.|.+|+++ |++++
T Consensus 93 ~~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~-------r~~a~ 150 (392)
T PRK12382 93 LAGLAYLLAAILPV---------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH-------SGKVM 150 (392)
T ss_pred HHHHHHHhhhcccc---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc-------cchhh
Confidence 66544333221111 001256788999999999999988988999999998744 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccCCC
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKL 255 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (548)
++.+...++|..+||.+++++.+++||+..+.+..+..++... .....++.+++++++.+..+..+.+ ..
T Consensus 151 ~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~----- 220 (392)
T PRK12382 151 SWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA-FNGTVRKVPAHAGERPSLWSVVGLI----WK----- 220 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH-HHHhccCCCCCcccCchHHHHHHHH----HH-----
Confidence 9999999999999999999999889999877655443322221 1111111111110001111100000 00
Q ss_pred CCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCcee
Q 008934 256 PTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEI 335 (548)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i 335 (548)
......-.... ......... ....+.. .
T Consensus 221 ---------------------~~~~~~l~~~~----------------------~~~~~~~~~---~~~~~~~------~ 248 (392)
T PRK12382 221 ---------------------PGLGLALQGVG----------------------FAVIGTFVS---LYFASKG------W 248 (392)
T ss_pred ---------------------hHHHHHHHHHH----------------------HhHHHHHHH---HHHHhcC------C
Confidence 00000000000 000000000 0000111 1
Q ss_pred cCc-ccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcc
Q 008934 336 PSG-SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLR 414 (548)
Q Consensus 336 ~~~-~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (548)
+.. .......+..+ ...+..+++.+| .++++.+..+..+.+++++.+...+
T Consensus 249 ~~~~~~~~~~~~~~~--------~~~~~~g~l~~r---~g~~~~~~~~~~~~~~~~~~~~~~~----------------- 300 (392)
T PRK12382 249 AMAGFTLTAFGGAFV--------LMRVLFGWMPDR---FGGVKVAIVSLLVETVGLLLLWLAP----------------- 300 (392)
T ss_pred chhHHHHHHHHHHHH--------HHHHHHHHHHHh---cCCCeehHHHHHHHHHHHHHHHHcc-----------------
Confidence 111 11111111111 233344455555 5555667777788777776655433
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCC
Q 008934 415 AVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP 494 (548)
Q Consensus 415 ~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~ 494 (548)
+.+.+.+..++.+++++...|.......+..|++.||+++|+++....+|+.+|+.+.+.+.+..
T Consensus 301 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~---------- 365 (392)
T PRK12382 301 -----TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF---------- 365 (392)
T ss_pred -----cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 45566667788899999888888888889999999999999999999999999999999876432
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 008934 495 SNINKGHYDYYYWLLTALSMANFLYYLAC 523 (548)
Q Consensus 495 ~~~~~~~~~~~f~~~~~~~~v~~~~~~~~ 523 (548)
++...|...+++.+++.++.+..
T Consensus 366 ------g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 366 ------GYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred ------CchHHHHHHHHHHHHHHHHHHhh
Confidence 24667888888777777665543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-23 Score=221.73 Aligned_cols=386 Identities=13% Similarity=0.030 Sum_probs=242.7
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
|.....+.+..++..+..-.+..-+|.. .+++|.+..+.+|+.+.+.++..+..+++|+++||+ |||+++.++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~ 82 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 3444455555555555555555556655 779999999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
+++++++.++ +.+.++++|+++|+|.+...+.....+.+.++++ ++|++++
T Consensus 83 ~~~~~~~~a~-----------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~------~~r~~~~ 133 (495)
T PRK14995 83 LASLAAAFSP-----------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEE------KQRNMAL 133 (495)
T ss_pred HHHHHHHHcC-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHH
Confidence 9999998866 7888999999999999999888888888877542 4599999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHH--------HHHH
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQV--------LVAS 247 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 247 (548)
++.....++|..+||.+++++.++.|||+.|++...+.++.+++.....|+.++++. ++.+..... +...
T Consensus 134 g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~--~~~d~~g~~~~~~~~~~l~~~ 211 (495)
T PRK14995 134 GVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRD--QPLNLGHALMLIVAILLLVYS 211 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CCCChHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887766665555444443222111 111111100 0111
Q ss_pred HhhccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchH--------------HHH
Q 008934 248 FKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTV--------------EQV 313 (548)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~ 313 (548)
+++...... +....... . .........+....... ..+..++.++.+ ...
T Consensus 212 ~~~~~~~~~--~~~~~~~~-~---~~~~~~l~~f~~~e~~~----------~~p~~~~~lf~~~~~~~~~~~~~~~~~~~ 275 (495)
T PRK14995 212 AKTALKGFL--SLWVTSLT-L---LTGALLLGLFIRTQLAA----------SRPMIDMRLFTHRIILSGVVMAMTAMITL 275 (495)
T ss_pred HHhccccCC--chHHHHHH-H---HHHHHHHHHHHHHHhcC----------CCCCcCHHHhCCcccHHHHHHHHHHHHHH
Confidence 111000000 00000000 0 00000000000000000 000011100000 000
Q ss_pred HHHHHHHHHhhccCCCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHH
Q 008934 314 EELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAW 393 (548)
Q Consensus 314 ~~~~~~~~~~~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~ 393 (548)
...... -...+....| .+ .......+....+...+..++.+++.+| .++++.+..|.++.++++..+
T Consensus 276 ~~~~~~-~~~~lq~v~g----~s-----~~~ag~~~~~~~~~~~~~~~~~g~l~~r---~g~~~~~~~g~~~~~~~~~~l 342 (495)
T PRK14995 276 VGFELL-MAQELQFVHG----LS-----PLEAGMFMLPVMVASGFSGPIAGILVSR---LGLRLVATGGMALSALSFYGL 342 (495)
T ss_pred HHHHHH-HHHHHHHHcC----CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCchHHHHHHHHHHHHHHHHH
Confidence 000000 0111111111 11 1122222222223333344555555555 556666778888888887766
Q ss_pred HHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHH
Q 008934 394 AIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVA 473 (548)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg 473 (548)
.... ...+.+......++.|+|.+...++.+..+.+.+|++++|.+++++++.+++|+.+|
T Consensus 343 ~~~~-------------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G 403 (495)
T PRK14995 343 AMTD-------------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLG 403 (495)
T ss_pred HHhc-------------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHH
Confidence 5433 122455566778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhh
Q 008934 474 SLIMNAVDD 482 (548)
Q Consensus 474 ~~~~~~i~~ 482 (548)
+++.+.+..
T Consensus 404 ~ai~g~i~~ 412 (495)
T PRK14995 404 IAIFGLLLS 412 (495)
T ss_pred HHHHHHHHH
Confidence 999988754
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-22 Score=214.73 Aligned_cols=397 Identities=10% Similarity=0.020 Sum_probs=243.8
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
.+.++.+....++..+..+.+.+.+|.|.+ ++|+|+.+.+++.+.+.++..++.+++|+++||+ ||||++..+.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 346677777888888888889998888865 7999999999999999999999999999999996 99999999988888
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
++.+++..++ +.+.++++|+++|++.+...|...+++.|.+|+ ++|++++
T Consensus 87 ~~~~~~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 136 (471)
T PRK10504 87 LGSLFCALSG-----------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR-------EQYMAAM 136 (471)
T ss_pred HHHHHHHHhC-----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH-------HHHHHHH
Confidence 8887776654 677888999999999999999999999999987 4489999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHH---HH--HHHhh
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQV---LV--ASFKN 250 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~ 250 (548)
++.+...++|..+||.+++++.++.||++.|.+..+...+..+......++.+.++...+........ .. ....+
T Consensus 137 ~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 216 (471)
T PRK10504 137 TFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDG 216 (471)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999987766655555444433322211111110000000 00 00000
Q ss_pred ccCCCCCcchhhhhhcCCCCcccCCc-chh-hhHHhhhhhcCCCCCCCCCCCCCCCCccch----HHHHH-HHHHHHHHh
Q 008934 251 RRTKLPTQATEEMYHHGKGSMRLMPS-ENL-RFLNKACMAKHPEQDLTPDGRASNPNSLCT----VEQVE-ELKALIKAS 323 (548)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~ 323 (548)
.. +..+............ ... .+..+.. ...+.....+....-.|.... ..... .....+...
T Consensus 217 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 286 (471)
T PRK10504 217 SK--------GLGLSPLAIAGLVAVGVVALLLYLLHAR--NNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPV 286 (471)
T ss_pred CC--------cCCcchHHHHHHHHHHHHHHHHHHHHHh--cCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000000000000000 000 0000000 000000000000000000000 00000 000000111
Q ss_pred hccCCCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008934 324 SMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSI 403 (548)
Q Consensus 324 ~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~ 403 (548)
......| .++. ..........+......++..++.+| .++++.+.+|.++.+++...+.+..
T Consensus 287 ~~~~~~g----~~~~-----~~g~~~~~~~~~~~~~~~~~~~l~~r---~g~~~~~~~~~~~~~~~~~~~~~~~------ 348 (471)
T PRK10504 287 FLQIGLG----FSPF-----HAGLMMIPMVLGSMGMKRIVVQVVNR---FGYRRVLVATTLGLALVSLLFMLVA------ 348 (471)
T ss_pred HHHHHcC----CCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH---cCchHHHHHHHHHHHHHHHHHHhcc------
Confidence 1111121 1111 11111111122222233455566666 6666777778887777766655432
Q ss_pred hhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008934 404 AINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDI 483 (548)
Q Consensus 404 ~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~ 483 (548)
.....+.+....++.|++.++..+..+....+.+|++.+|.++|+.++.+.+|..+|+.+.+.+...
T Consensus 349 -------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~ 415 (471)
T PRK10504 349 -------------LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL 415 (471)
T ss_pred -------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0113333445667788999999999999999999999999999999999999999999999987654
Q ss_pred hc
Q 008934 484 TK 485 (548)
Q Consensus 484 ~~ 485 (548)
.+
T Consensus 416 ~g 417 (471)
T PRK10504 416 FG 417 (471)
T ss_pred hh
Confidence 43
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-23 Score=217.26 Aligned_cols=383 Identities=14% Similarity=-0.005 Sum_probs=243.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Q 008934 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (548)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~ 91 (548)
.+++|......++..+++.+..+......|.+ .+++|+|+.+.+++.+.+.++..++.++.|+++||+ ||||++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~ 87 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRM-AQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSV 87 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHH
Confidence 34567777777778888888887776666655 678999999999999999999999999999999996 9999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhh
Q 008934 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (548)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 171 (548)
++..++.+++.++. +.+.+++.|++.|++.+...+...+++.|.+|++ +|
T Consensus 88 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~r 137 (406)
T PRK11551 88 ALFGLFSLATAQAW-----------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR-------LR 137 (406)
T ss_pred HHHHHHHHHHHHhc-----------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH-------HH
Confidence 88888877777654 6788899999999999999999999999999884 48
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhc
Q 008934 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNR 251 (548)
Q Consensus 172 ~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (548)
++++++.+...++|..++|.+++.+.+..+|+..|++.+++.++..+......++.++.+++++...+.........+++
T Consensus 138 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (406)
T PRK11551 138 GTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEG 217 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhh
Confidence 99999999999999999999998888888999999987765554444333333322111111000000000000000000
Q ss_pred cCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCC
Q 008934 252 RTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTP 331 (548)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 331 (548)
+. .. ....++...... .. ........ ...+. ..+
T Consensus 218 ~~----------------~~-----~~~~~~~~~~~~------------------~~-~~~~~~~~----p~~~~-~~g- 251 (406)
T PRK11551 218 RA----------------TA-----TLLLWISYFFTL------------------IV-LYFLLNWL----PSLLV-GQG- 251 (406)
T ss_pred hh----------------hH-----HHHHHHHHHHHH------------------HH-HHHHHHHH----HHHHH-hCC-
Confidence 00 00 000000000000 00 00000000 00011 011
Q ss_pred CceecCcccc---hhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008934 332 NFEIPSGSFN---IFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEG 408 (548)
Q Consensus 332 ~~~i~~~~~~---~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~ 408 (548)
.+..... ....+..++... ..+++.+| .++++.+..+.+..+++++.+....
T Consensus 252 ---~s~~~~~~~~~~~~~~~~~~~~--------~~g~l~dr---~g~~~~~~~~~~~~~~~~~~~~~~~----------- 306 (406)
T PRK11551 252 ---LSRSQAGLVQIAFNIGGALGSL--------LIGALMDR---LRPRRVVLLIYAGILASLAALAAAP----------- 306 (406)
T ss_pred ---CChhhhhHHHHHHHHHHHHHHH--------HHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHhcC-----------
Confidence 2222222 222222222222 22233333 3444445555555555555443322
Q ss_pred CCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 008934 409 ISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGG 488 (548)
Q Consensus 409 ~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~ 488 (548)
+.+.+....++.+++.....+...++..+..|++.||+++|+.+....+|..+|+.+.|.+.+..
T Consensus 307 -----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~---- 371 (406)
T PRK11551 307 -----------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG---- 371 (406)
T ss_pred -----------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC----
Confidence 44555566677788777778888888999999999999999999999999999999999866321
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 008934 489 NGGWIPSNINKGHYDYYYWLLTALSMANFLYYLAC 523 (548)
Q Consensus 489 ~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~ 523 (548)
+.+...++......+++++..+..
T Consensus 372 -----------~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 372 -----------RSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHHHH
Confidence 123455666666666665555444
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=218.01 Aligned_cols=389 Identities=13% Similarity=0.052 Sum_probs=242.7
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.+...+...++..++.......+|.+. ++++.++.++|++.+.+.+...+++++.|+++||+ ||||++..+.++..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~ 94 (417)
T PRK10489 17 PAFRAVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGL 94 (417)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHH
Confidence 3344555567777777777777777775 56788999999999999999999999999999996 999999988887777
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+...+....... ..+.+.+++.|++.|++.+...++..+++.|.+|++ +|+++.+
T Consensus 95 ~~~~~~~~~~~~------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 149 (417)
T PRK10489 95 GFIGLALNAFLP------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE-------NLMQAGA 149 (417)
T ss_pred HHHHHHHHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH-------HHHHHHH
Confidence 766554321000 115677888899999999988889999999999884 3899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceecc-CCCCCCchhHHHHHHHHHhhccCCC
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKS-KANTSLLPGLTQVLVASFKNRRTKL 255 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (548)
+.+...++|..+||.+++++.+..+|++.|++.++..+++.+..... ++.+++ ++++++..+..+......+++...
T Consensus 150 ~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 227 (417)
T PRK10489 150 ITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PALPPPPQPREHPLRSLLAGFRFLLASPVVG- 227 (417)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCCCCCCcccccchHHHHHHHHHHHcChHHH-
Confidence 99999999999999999999988899999988777666555443322 221111 111111111111111111111000
Q ss_pred CCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCcee
Q 008934 256 PTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEI 335 (548)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i 335 (548)
...+...... . .... ...+ ........+ .
T Consensus 228 -----------------------~~~~~~~~~~------------------~--~~~~---~~~~-p~~~~~~~g----~ 256 (417)
T PRK10489 228 -----------------------GIALLGGLLT------------------M--ASAV---RVLY-PALADEVWQ----M 256 (417)
T ss_pred -----------------------HHHHHHHHHH------------------H--HHhH---HHhh-HHHHHhccC----C
Confidence 0000000000 0 0000 0000 011111111 2
Q ss_pred cCcccc---hhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008934 336 PSGSFN---IFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDD 412 (548)
Q Consensus 336 ~~~~~~---~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 412 (548)
++.... ....+..++. ..+.+++.+| .++.+.+..+.++.+++++.+....
T Consensus 257 ~~~~~g~~~~~~~~g~~ig--------~~~~~~l~~~---~~~~~~l~~~~~~~~~~~~~~~~~~--------------- 310 (417)
T PRK10489 257 GAAQIGLLYAAVPLGAALG--------ALTSGWLAHS---ARPGLLMLLSTLGSFLAVGLFGLMP--------------- 310 (417)
T ss_pred ChhHhHHHHHHHHHHHHHH--------HHHHHHhhhc---cCcchHHHHHHHHHHHHHHHHHccc---------------
Confidence 222222 2222222222 2223333333 3344456667777777766654432
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 008934 413 LRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGW 492 (548)
Q Consensus 413 ~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~ 492 (548)
+.+......++.|++.+...+...++..+..|++.||+++|+.+...++|..+|+.+.|.+.+..+
T Consensus 311 -------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g------- 376 (417)
T PRK10489 311 -------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT------- 376 (417)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-------
Confidence 455566677888898888888888899999999999999999999999999999999998775321
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCc
Q 008934 493 IPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV 534 (548)
Q Consensus 493 ~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 534 (548)
+...++..+++.++..++.+...++.++++.++
T Consensus 377 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (417)
T PRK10489 377 ---------PVASASASGFGLLIIGVLLLLVLGELRRFRQTP 409 (417)
T ss_pred ---------hhhHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 233455555555444444444445555444444
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-21 Score=204.47 Aligned_cols=383 Identities=13% Similarity=0.098 Sum_probs=248.8
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhH-----HHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTA-----ATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~-----ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~ 91 (548)
|....+....++..++++...+++|.|++ ++|++..+ ++++.+++.+...++.++.|+++||+ |||+++..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~ 91 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA 91 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH
Confidence 34556667788888888889999999975 68998765 48889999999999999999999996 9999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhh
Q 008934 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (548)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 171 (548)
++..++..++..+. +.+.+++.|++.|++.+ ..+...+++.+.+|+++ |
T Consensus 92 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~-------~ 140 (408)
T PRK09874 92 LGMGIVMVLMGLAQ-----------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK-------S 140 (408)
T ss_pred HHHHHHHHHHHHHh-----------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh-------h
Confidence 88888887777654 67788899999998865 45777888899988743 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhc
Q 008934 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNR 251 (548)
Q Consensus 172 ~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (548)
+++.++.+...++|..++|.+++.+.++.+|+..|++.++..++..+......++..+++++ ++..+. +.....++++
T Consensus 141 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~ 218 (408)
T PRK09874 141 GWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSK-KEMLHM-REVVTSLKNP 218 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccc-hhhhHH-HHHHHhCcCC
Confidence 99999999999999999999999999989999999988876665555444333321111111 010010 0000000100
Q ss_pred cCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCC
Q 008934 252 RTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTP 331 (548)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 331 (548)
+. ....+-..... ............. ...+. .+
T Consensus 219 ~~------------------------~~~~~~~~~~~------------------~~~~~~~~~~~~~---~~~~~-~~- 251 (408)
T PRK09874 219 KL------------------------VLSLFVTTLII------------------QVATGSIAPILTL---YVREL-AG- 251 (408)
T ss_pred ch------------------------HHHHHHHHHHH------------------HHHHHHHHHHHHH---HHHHH-hc-
Confidence 00 00000000000 0000000000000 00000 00
Q ss_pred CceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 008934 332 NFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISD 411 (548)
Q Consensus 332 ~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 411 (548)
. . .... ...........+...+..+..+++.+| .++++.+..+.++.+++++.....+
T Consensus 252 ~--~--~~~~-~~~g~~~~~~~l~~~~~~~~~g~l~dr---~g~~~~~~~~~~~~~~~~~~~~~~~-------------- 309 (408)
T PRK09874 252 N--V--SNIA-FISGMIASVPGVAALLSAPRLGKLGDR---IGPEKILITALIFSVLLLIPMSFVQ-------------- 309 (408)
T ss_pred c--c--hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHHHHHHhc--------------
Confidence 0 0 0000 000000001112222344455566666 5666667777777666665554433
Q ss_pred CcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 008934 412 DLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGG 491 (548)
Q Consensus 412 ~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~ 491 (548)
+.+.+.+..++.|++++...|...+...+..|++.+|..+++++....+|..+|+.+.+.+.+..
T Consensus 310 --------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~------- 374 (408)
T PRK09874 310 --------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY------- 374 (408)
T ss_pred --------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc-------
Confidence 45666677788999999999999999888999999999999999999999999999999876322
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008934 492 WIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 527 (548)
Q Consensus 492 ~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 527 (548)
++...|+..+++.+++.+..+...++.
T Consensus 375 ---------g~~~~f~~~~~~~l~~~~~~~~~~~~~ 401 (408)
T PRK09874 375 ---------GFRAVFLVTAGVVLFNAVYSWNSLRRR 401 (408)
T ss_pred ---------chhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 256778888888888777665544333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-21 Score=203.86 Aligned_cols=186 Identities=12% Similarity=0.094 Sum_probs=156.5
Q ss_pred CccccccCCCCCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008934 3 TEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVG 82 (548)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~G 82 (548)
.||-...+..|+.|+....+....++.....|...+.+|.+ .+++|+++++.++..+.+.++..+++++.|+++||+ |
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g 83 (394)
T PRK10213 6 AENRGADAITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-D 83 (394)
T ss_pred cCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-C
Confidence 34444444556677776666666566666666666777765 679999999999999999999999999999999996 9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCC
Q 008934 83 RYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKG 162 (548)
Q Consensus 83 rk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~ 162 (548)
|||++..+.++..++.+++..++ +.+.+++.|+++|++.|...+...+++.|.+|++
T Consensus 84 rr~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 140 (394)
T PRK10213 84 RRYVVILFAVLLTLSCLLVSFAN-----------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPR 140 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHC-----------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHh
Confidence 99999999999999888887755 7889999999999999999999999999999884
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHH
Q 008934 163 DGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSF 220 (548)
Q Consensus 163 ~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~ 220 (548)
+|+++.++.....++|..++|.+++++.+++||++.|++.+++.++..+..
T Consensus 141 -------~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~ 191 (394)
T PRK10213 141 -------TVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWI 191 (394)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999998876555444333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-21 Score=202.80 Aligned_cols=357 Identities=15% Similarity=0.099 Sum_probs=226.3
Q ss_pred cchHHHHHHHHHHHH---HHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Q 008934 16 LRTLPFIIANEAFER---MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~---~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~ 92 (548)
.+..+..+...+.+. ++.....+.++. +++++|.|+.+.++..+.+.++..+++++.|+++||+ ||||++.++..
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~ 86 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVA 86 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence 344444444444443 344445555554 4679999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhH
Q 008934 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (548)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (548)
+..++..+...++ +.+.+++.|+++|++.+...+...+.+.|.+|+++ |.
T Consensus 87 ~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-------~~ 136 (406)
T PRK15402 87 FFILTCLAILLAQ-----------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD-------AI 136 (406)
T ss_pred HHHHHHHHHHHHc-----------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH-------HH
Confidence 8888888877655 67778899999999999888889999999998844 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcc
Q 008934 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRR 252 (548)
Q Consensus 173 ~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (548)
++.++.+....+|..++|.+++++.++.+|++.|++.++..++..+......|+.+++++++.+..+........++++.
T Consensus 137 ~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (406)
T PRK15402 137 KITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNRR 216 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHcCcH
Confidence 88888888888999999999999999889999999887776665554443333322111111111111111111111110
Q ss_pred CCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCC
Q 008934 253 TKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPN 332 (548)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 332 (548)
... ..+...... .. ........ ........+
T Consensus 217 ~~~------------------------~~~~~~~~~------------------~~-~~~~~~~~----p~~~~~~~g-- 247 (406)
T PRK15402 217 FVA------------------------GALALGLVS------------------LP-LLAWIALS----PVILISGEQ-- 247 (406)
T ss_pred HHH------------------------HHHHHHHHH------------------HH-HHHHHHHh----HHHHHHHhC--
Confidence 000 000000000 00 00000000 000001111
Q ss_pred ceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008934 333 FEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDD 412 (548)
Q Consensus 333 ~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 412 (548)
.++....... ....+...+..+..+++.+| .+.++.+.+|.++.+++...+.....
T Consensus 248 --~~~~~~g~~~-----~~~~~~~~~g~~~~g~l~~r---~~~~~~~~~~~~~~~~g~~~~~~~~~-------------- 303 (406)
T PRK15402 248 --LSSYEYGLLQ-----VPVFGALIAGNLTLARLTSR---RPLRSLIRMGLWPMVAGLLLAALATV-------------- 303 (406)
T ss_pred --CCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 1111111110 00011111123345555555 66667778888888777776655420
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008934 413 LRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 481 (548)
Q Consensus 413 ~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~ 481 (548)
....+.++++...++.++|++...+..+...... +++.+|+++++.++.+.+|..+|+.+.+.+.
T Consensus 304 ---~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~ 368 (406)
T PRK15402 304 ---ISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAY 368 (406)
T ss_pred ---cccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0112466677888999999999888777766444 4588999999999999999999999988754
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-21 Score=203.14 Aligned_cols=367 Identities=14% Similarity=0.123 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHH-HHHHHHHHHHHH
Q 008934 23 IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGF-GCFTCLLGMVLL 101 (548)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~-~~~~~~~~~~l~ 101 (548)
++..++..++.....+.++.|+++++|.|+.+.|++.+.+.+...+.+++.|+++||+ ||||.+++ +..+..++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence 3457788888999999999999999999999999999999999999999999999996 99987665 444555566666
Q ss_pred HHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHH--HHHHHH
Q 008934 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS--YFSWYY 179 (548)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~ 179 (548)
..++ +.+.+++.|++++.+.+...|...++..|..|+++ |.+ ..+..+
T Consensus 82 ~~~~-----------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~~~~~~ 131 (375)
T TIGR00899 82 AWNR-----------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG-------REAVMFSSVMR 131 (375)
T ss_pred Hhcc-----------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc-------hhhHHHHHHHH
Confidence 6544 56778888888888877778888888888776533 333 357777
Q ss_pred HHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccCCCCCcc
Q 008934 180 VFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQA 259 (548)
Q Consensus 180 ~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (548)
...++|..+||.+++++.+.+||++.|++.++..++..+..+...|+.++++++++...+.. ...+++
T Consensus 132 ~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------- 199 (375)
T TIGR00899 132 AQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALTRLEVR----GLLASR-------- 199 (375)
T ss_pred HHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccCcchhh----hhhcCc--------
Confidence 78899999999999999998999999999888666555544433333222111111100000 000000
Q ss_pred hhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCceecCcc
Q 008934 260 TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGS 339 (548)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~~~~ 339 (548)
....+...... .+ .+ ........ ........+ .++..
T Consensus 200 ------------------~~~~~~~~~~~---------------~~-~~-~~~~~~~~----~~~~~~~~g----~~~~~ 236 (375)
T TIGR00899 200 ------------------DTRLLFVACTL---------------MW-GC-NILYIINM----PLLIIHELG----LPDKL 236 (375)
T ss_pred ------------------chHHHHHHHHH---------------HH-HH-HHHHHhhh----HHHHHHHcC----CCHHH
Confidence 00000000000 00 00 00000000 000001111 22222
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccc
Q 008934 340 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM 419 (548)
Q Consensus 340 ~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (548)
...+....... .....+..+++.+| .++++.+.++.++..+.+..+...+
T Consensus 237 ~g~~~~~~~~~-----~~~~~~~~g~l~~r---~g~~~~~~~~~~~~~~~~~~~~~~~---------------------- 286 (375)
T TIGR00899 237 AGLMMGTAAGL-----EIPFMLLAGYLIKR---FGKRRLMLLAALAGVAFYTGLAADN---------------------- 286 (375)
T ss_pred HHHHHHHHHHH-----HHHHHHhHHHHHHH---hcchhHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 21111111111 11122233344444 4444555566655554444433322
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCC
Q 008934 420 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK 499 (548)
Q Consensus 420 s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~ 499 (548)
+.+.+....++.+++.+...+..+....+..|++ ++.++|+.+...++|..+|+.+.+.+.+..
T Consensus 287 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~--------------- 350 (375)
T TIGR00899 287 SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERW--------------- 350 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------
Confidence 4555666677788888888888888887888765 679999999999999999999999876432
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 008934 500 GHYDYYYWLLTALSMANFLYYLA 522 (548)
Q Consensus 500 ~~~~~~f~~~~~~~~v~~~~~~~ 522 (548)
++...|+..+++.+++.+.+..
T Consensus 351 -g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 351 -SYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred -cchhHHHHHHHHHHHHHHHHhe
Confidence 2456677877777777666543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-22 Score=203.88 Aligned_cols=350 Identities=13% Similarity=0.023 Sum_probs=232.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHH
Q 008934 22 IIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLL 101 (548)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~ 101 (548)
++...++..++.......+|.|.. +++.++.+.+++.+++.++..++.++.|+++||+ ||||++..+.++..++..+.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence 445677777777777788888865 6899999999999999999999999999999996 99999999998888777776
Q ss_pred HHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHH
Q 008934 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181 (548)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 181 (548)
......+ +.+.+.++++|+++|++.+...++..+++.|.+|++ +|++++++.+..
T Consensus 82 ~~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 136 (365)
T TIGR00900 82 PFVALLG------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE-------QLTQANSLSQAV 136 (365)
T ss_pred HHHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH-------HHHHHHhHHHHH
Confidence 6543111 126788899999999999999999999999999984 499999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCch-h----HHHHHHHHHhhccCCCC
Q 008934 182 VSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLP-G----LTQVLVASFKNRRTKLP 256 (548)
Q Consensus 182 ~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~ 256 (548)
.++|..+||.+++++.+..||++.|++.++..+++.+.......+..+++ +.++.+ + ..+......+++.
T Consensus 137 ~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---- 211 (365)
T TIGR00900 137 RSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS-EIQALSNAVLRDTREGIKFVLKNPL---- 211 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc-cccccchhHHHHHHhHHHHHHcCcH----
Confidence 99999999999999999899999999887766655544433322211111 111111 1 0000000111100
Q ss_pred CcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHH-HHHHHHHHhhccCCCCCCcee
Q 008934 257 TQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVE-ELKALIKASSMDRHVTPNFEI 335 (548)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~~i 335 (548)
+..+-..... + ........ ..... ......+ .
T Consensus 212 ----------------------~~~~~~~~~~----------------~-~~~~~~~~~~~~~~----~~~~~~~----~ 244 (365)
T TIGR00900 212 ----------------------LRTLLLLALL----------------F-NLVFAPAIVALFPY----VQSKYLG----R 244 (365)
T ss_pred ----------------------HHHHHHHHHH----------------H-HHHHHHHHHHHhHH----HHHHHhC----C
Confidence 0000000000 0 00000000 00111 0010011 2
Q ss_pred cCcccc---hhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008934 336 PSGSFN---IFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDD 412 (548)
Q Consensus 336 ~~~~~~---~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 412 (548)
+..... ....+..++. .+...++.+| .++++.+..+.++.+++...+.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 298 (365)
T TIGR00900 245 GSTHYGWVLAAFGLGALLG--------ALLLGLLGRY---FKRMALMTGAIFVIGLAILVVGLTP--------------- 298 (365)
T ss_pred chHHHHHHHHHHHHHHHHH--------HHHHHHHHHH---hchhHHHHHHHHHHHHHHHHHHhhc---------------
Confidence 222222 2222222222 2223344444 4555566667777777776665543
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008934 413 LRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD 482 (548)
Q Consensus 413 ~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~ 482 (548)
+ +.+.+.+..++.+++.+...+...+...+.+|++.||+++|+.+...+++..+|+.+.|.+.+
T Consensus 299 -----~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 299 -----P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred -----h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 256677788899999999999999999999999999999999999999999999999988653
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-20 Score=190.38 Aligned_cols=381 Identities=16% Similarity=0.131 Sum_probs=259.5
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Q 008934 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (548)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~ 91 (548)
.+..|..++.+.+..|+....=+.....+|.- .+++|.|..++|+.++.|.++..++.|+-..+.||+ .||++++..+
T Consensus 8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~i-A~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l 85 (394)
T COG2814 8 RKPMWLALLALALAAFAIGTTEFVPVGLLPPI-AADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLL 85 (394)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHhchHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHH
Confidence 34556777777778888888888888888765 789999999999999999999999999999999996 9999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhh
Q 008934 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (548)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 171 (548)
.+++++.+++++++ +++.++++|++.|+..|.+++...+..++..|+++ |
T Consensus 86 ~lFi~~n~l~alAp-----------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~-------~ 135 (394)
T COG2814 86 ALFIVSNLLSALAP-----------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK-------R 135 (394)
T ss_pred HHHHHHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc-------h
Confidence 99999999999988 89999999999999999999999999999999955 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCC-ceeccCCCCCCchhHHHHHHHHHhh
Q 008934 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP-FYVKSKANTSLLPGLTQVLVASFKN 250 (548)
Q Consensus 172 ~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (548)
+++.++...+..++.++|.+++.++.|.+|||..|+..+++.++..+..+...| +..++ +.+.+..+..+ .+++
T Consensus 136 ~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~-~~~~~~~~~~~----~l~~ 210 (394)
T COG2814 136 GRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISG-SLPGPLRTLLR----LLRR 210 (394)
T ss_pred hhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCC-CCCcchhHHHH----HhcC
Confidence 999999999999999999999999999999999999999988888877777666 11111 11122222111 1111
Q ss_pred ccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCC
Q 008934 251 RRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVT 330 (548)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 330 (548)
+.... .+.- .....-. - .. ..++++....+.. |
T Consensus 211 p~v~~------------------------~l~~-t~l~~~g------------~-----F~----~ftYi~P~L~~v~-g 243 (394)
T COG2814 211 PGVLL------------------------GLLA-TFLFMTG------------H-----FA----LYTYIRPFLESVA-G 243 (394)
T ss_pred chHHH------------------------HHHH-HHHHHcc------------h-----hh----hHHhHHHHHHHcc-C
Confidence 11000 0000 0000000 0 00 0111111111111 0
Q ss_pred CCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 008934 331 PNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGIS 410 (548)
Q Consensus 331 ~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 410 (548)
++.+ ..-.+++...+...+-..+.+|+.|| ++++.+.....+.++.++.+.+..
T Consensus 244 ----~s~~-----~vs~~Ll~~Gv~~~~Gn~~gGrl~dr----~~~~~l~~~~~l~a~~~l~l~~~~------------- 297 (394)
T COG2814 244 ----FSVS-----AVSLVLLAFGIAGFIGNLLGGRLADR----GPRRALIAALLLLALALLALTFTG------------- 297 (394)
T ss_pred ----CCHh-----HHHHHHHHHHHHHHHHHHHHhhhccc----cchhHHHHHHHHHHHHHHHHHHhc-------------
Confidence 1111 11111222222223344455666554 455556666677777777766654
Q ss_pred CCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 008934 411 DDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNG 490 (548)
Q Consensus 411 ~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~ 490 (548)
-+.+..+...++.+++........+....+.+ ++.++.+++++....++|..+|..+.|.+.+..
T Consensus 298 --------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~------ 362 (394)
T COG2814 298 --------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDAL------ 362 (394)
T ss_pred --------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------
Confidence 14445555555555544443333344444433 466999999999999999999999999876432
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008934 491 GWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 527 (548)
Q Consensus 491 ~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 527 (548)
++....+..+...++++++.+...+++
T Consensus 363 ----------g~~~~~~~~a~l~~~a~~~~~~~~~~~ 389 (394)
T COG2814 363 ----------GYAATGWVGAALLLLALLLALLSARKD 389 (394)
T ss_pred ----------chHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356667787777777777665544433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-20 Score=198.90 Aligned_cols=351 Identities=14% Similarity=0.081 Sum_probs=216.4
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.++.+....++..++.......++.. .+++|.++.+.+++.+.+.+...+..+++|+++||+ ||||++.++.+++.+
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~ 80 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL 80 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence 445566667777777655555555544 679999999999999999999999999999999996 999999999999988
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+.+++..+. + .++.|+++|++.+...|+..+++.|.+|+ ++|+++++
T Consensus 81 ~~~~~~~~~-----------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~-------~~~~~a~~ 127 (393)
T PRK11195 81 GCLLMLFGI-----------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPG-------EKLVKANG 127 (393)
T ss_pred HHHHHHHHH-----------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHH
Confidence 887766543 2 26779999999999999999999999998 44999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCC-CCCCchhHHHHHHHHHhhccCCC
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKA-NTSLLPGLTQVLVASFKNRRTKL 255 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 255 (548)
+.....++|.++||.++|++.+. .|+..+.+.+...+++.+... ..|+.+.+++ .+.......+......
T Consensus 128 ~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~------- 198 (393)
T PRK11195 128 WMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAALFNL-FIPRLGARRPGQSWNPIALLRDFFHAC------- 198 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh-cCCCCcccccccCCCHHHHHHHHHHHH-------
Confidence 99999999999999999999885 477777766655444433322 2222211111 1111000011100000
Q ss_pred CCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCcee
Q 008934 256 PTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEI 335 (548)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i 335 (548)
+..+.+.. .....+.... .| .+ ........ .......++ .
T Consensus 199 -----~~l~~~~~--------~~~~~~~~~~-----------------~~-~~-~~~~~~~~----~~~~~~~lg----~ 238 (393)
T PRK11195 199 -----RVLWRDKL--------GRFSLAGTTL-----------------FW-GA-GATLRFLV----LAWAPVALG----I 238 (393)
T ss_pred -----HHHHhCch--------hHHHHHHHHH-----------------HH-HH-HHHHHHHH----HHHHHHHcC----C
Confidence 00011000 0000000000 00 00 00000000 000111111 2
Q ss_pred cCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccc
Q 008934 336 PSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRA 415 (548)
Q Consensus 336 ~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (548)
++.....+. ....+...+..++.+|+.++ .+..+.+..|. +.++....+....
T Consensus 239 s~~~~G~~~-----~~~~~g~i~g~~~~~~l~~~---~~~~~~~~~g~-~~~~~~~~~~~~~------------------ 291 (393)
T PRK11195 239 TLNQPAYLQ-----AVVAIGIAVGAGAAARLVTL---ETVLRVLPAGI-LMGLVVLLMALQH------------------ 291 (393)
T ss_pred ChhHHHHHH-----HHHHHHHHHHHHHHHHHhcC---CcccchHHHHH-HHHHHHHHHHHHh------------------
Confidence 222221111 11111122233334555444 34444555554 3333333333322
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchh-hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008934 416 VVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM-SSIASTLSGAGLSAANLVASLIMNAVDD 482 (548)
Q Consensus 416 ~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~-rg~~~g~~~~~~~~g~~lg~~~~~~i~~ 482 (548)
+.++.....++.|++.++..++.++...+..|+++ +|.++|+.++.++++..++.++.+.+..
T Consensus 292 ----~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~ 355 (393)
T PRK11195 292 ----SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK 355 (393)
T ss_pred ----HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45666677788999999999989999888777765 7999999999999999999999887653
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=208.89 Aligned_cols=394 Identities=12% Similarity=0.075 Sum_probs=238.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Q 008934 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (548)
+..+....++..+........+| ++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS 81 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence 33444455555555555555555 55779999999999999999999999999999999996 99999999999999998
Q ss_pred HHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHH
Q 008934 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (548)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (548)
+++..++ +.+.++++|+++|++.+...+...+++.|.+|+ ++|+++++++
T Consensus 82 ~~~~~~~-----------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~ 131 (485)
T TIGR00711 82 LLCGVAP-----------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP-------EKRGRAMAIW 131 (485)
T ss_pred HHHhCcC-----------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH-------HHHHHHHHHH
Confidence 8887655 678899999999999999999999999999998 4489999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHH--------HHHHhh
Q 008934 179 YVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVL--------VASFKN 250 (548)
Q Consensus 179 ~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 250 (548)
+....+|..+||.+++++.+++||++.|++.++..++..++.....++.++++ .++.+.....+ .....+
T Consensus 132 ~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~g~~l~~~~~~~~~~~~~~ 209 (485)
T TIGR00711 132 GLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAA--SENFDFLGLLLLSVGLGSLLYGLSE 209 (485)
T ss_pred HHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccc--cCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999887766655554444433321111 11111111100 000000
Q ss_pred ccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccch---HHHHHHH-HHHHHHhhcc
Q 008934 251 RRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCT---VEQVEEL-KALIKASSMD 326 (548)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~ 326 (548)
....-.. +++...... .........+........++.. ..........+..+. ....... ...+-...+.
T Consensus 210 ~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 283 (485)
T TIGR00711 210 GPERGWF-DSNEILILS----ITGLVAIIAFVVWELTDDNPLV-DLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQ 283 (485)
T ss_pred CCCCCCC-CchHHHHHH----HHHHHHHHHHHHHHHcCCCCcc-CHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 000000000 0000000000000000000000 000000000000000 0000000 0000011111
Q ss_pred CCCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008934 327 RHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAIN 406 (548)
Q Consensus 327 ~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~ 406 (548)
...+ .++.... .......+...+..+...++.+| .++++.+.+|..+.+++...+.+..
T Consensus 284 ~~~g----~s~~~~g-----~~~~~~~~~~~~~~~~~g~l~~r---~~~~~~~~~g~~~~~~~~~~~~~~~--------- 342 (485)
T TIGR00711 284 QVLG----YTALQAG-----LHILPVGLAPMLSSPIAGRMGDK---IDPRKLVTIGLILYAVGFYWRAFTF--------- 342 (485)
T ss_pred HhcC----CCHHHHH-----HHHHHHHHHHHHHHHHHHHHHhh---cCcHHHHHHHHHHHHHHHHHHhccC---------
Confidence 1111 2221111 11111222222344445555555 6666777888888888877765321
Q ss_pred cCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008934 407 EGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD 482 (548)
Q Consensus 407 ~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~ 482 (548)
..+.+.+.+....++.|+|.+...++......+..|++.+|+++|+.++.+.+|+.+|+.+.+.+.+
T Consensus 343 ---------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 343 ---------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred ---------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0223566677778899999999998888888889999999999999999999999999999887653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-21 Score=200.59 Aligned_cols=365 Identities=10% Similarity=0.034 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHH
Q 008934 22 IIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLL 101 (548)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~ 101 (548)
.+++.+..+...+.+.+.+|. +++++|+|.++.+++.+.+.++..+++++.|+++||+ ||||++..+..+++++.+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~ 91 (393)
T PRK09705 14 LVLIGLNMRPLLTSVGPLLPQ-LRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMR 91 (393)
T ss_pred HHHHHHHcchhhhccchhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHH
Confidence 334445555555667777775 4789999999999999999999999999999999996 99999999999999999999
Q ss_pred HHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHH
Q 008934 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181 (548)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 181 (548)
++++ +.+.++++|+++|+|.+...+...+++.+++| ++ |+++++.+..+
T Consensus 92 ~~a~-----------------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~-------~~~~~g~~~~~ 140 (393)
T PRK09705 92 ELYP-----------------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR-------TPLVMGLWSAA 140 (393)
T ss_pred HHCc-----------------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc-------chhHHHHHHHH
Confidence 9877 67788999999999999999999999999886 33 78999999999
Q ss_pred HHHHHHHHHHHHHHhhhcc-CchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccCCCCCcch
Q 008934 182 VSASSIVAVTCIVYIQDNL-GWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQAT 260 (548)
Q Consensus 182 ~~ig~~~gp~i~~~l~~~~-g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (548)
.+.|..+|+.+++++.++. +|+..+.+.++..++..+..+...++.+++++++ + .+ .++. .. ++
T Consensus 141 ~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~----------~~~~-l~--~~ 205 (393)
T PRK09705 141 LMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVASSHKT-T-TT----------PVRV-VF--TP 205 (393)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCC-C-cC----------Cccc-cc--CH
Confidence 9999999999999988875 8999887665544443333332222211111100 0 00 0000 00 00
Q ss_pred hhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHH-HHHHHHHhhccCCCCCCceecCcc
Q 008934 261 EEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEE-LKALIKASSMDRHVTPNFEIPSGS 339 (548)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lg~~~~i~~~~ 339 (548)
+. +. ..+..... ......... ...+ ..+. + .+...
T Consensus 206 ~~-~~--------------l~~~~~~~-------------------~~~~~~~~~~lp~~----l~~~--g----~s~~~ 241 (393)
T PRK09705 206 RA-WT--------------LGVYFGLI-------------------NGGYASLIAWLPAF----YIEI--G----ASAQY 241 (393)
T ss_pred hH-HH--------------HHHHHHHH-------------------HHHHHHHHHHHHHH----HHHc--C----CChhh
Confidence 00 00 00000000 000000101 1111 1111 1 22221
Q ss_pred ---cchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccc
Q 008934 340 ---FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV 416 (548)
Q Consensus 340 ---~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (548)
......+..++ .....+++.+| .++++.+.++..+.+++...+....
T Consensus 242 ag~~~~~~~i~~i~--------g~~~~g~l~~r---~~~~~~~~~~~~l~~~~~~~~~~~~------------------- 291 (393)
T PRK09705 242 SGSLLALMTLGQAA--------GALLMPAMARH---QDRRKLLMLALVLQLVGFCGFIWLP------------------- 291 (393)
T ss_pred hhHHHHHHHHHHHH--------HHHHHHHHHhh---ccchHHHHHHHHHHHHHHHHHHHcc-------------------
Confidence 22222222222 22234444445 5555666777777777766544322
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhhhhhccccc-CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCC
Q 008934 417 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTEL-PKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPS 495 (548)
Q Consensus 417 ~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~-P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~ 495 (548)
. +...+ ...+.+++.+...|.......+.. |++.+|..+|+.+....++..+||.+.+.+.+..+
T Consensus 292 ~--~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g---------- 357 (393)
T PRK09705 292 L--QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG---------- 357 (393)
T ss_pred c--hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------
Confidence 0 11111 234567777777777766666666 47889999999999999999999999999775432
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008934 496 NINKGHYDYYYWLLTALSMANFLYYLACCKAY 527 (548)
Q Consensus 496 ~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 527 (548)
++...|.+.+++.++..++.+...+++
T Consensus 358 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (393)
T PRK09705 358 -----NYLMDWAFHALCVVGLMIITLRFAPAR 384 (393)
T ss_pred -----CchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345667776666666666555544443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-21 Score=201.34 Aligned_cols=164 Identities=16% Similarity=0.037 Sum_probs=128.4
Q ss_pred HHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccC
Q 008934 29 ERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILP 108 (548)
Q Consensus 29 ~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~ 108 (548)
+...++.+.+.+|.. ++++|+|+.+.|++.+.+.+++.+++++.|+++||+ |||+++..+......+.. .....
T Consensus 3 ~~~~~~~~~~~lp~i-~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~--- 76 (368)
T TIGR00903 3 SQAIWVTFSPVLSLV-AEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP--- 76 (368)
T ss_pred hhHHHHHHHhhHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh---
Confidence 344555555666655 779999999999999999999999999999999996 999887655554444332 22221
Q ss_pred CCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 008934 109 GAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIV 188 (548)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~ 188 (548)
.+...+++.|+++|+|.+. .++..+.++|++|+ ++|++++++.+.+.++|..+
T Consensus 77 -------------------~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~-------~~r~~a~~~~~~~~~lG~~l 129 (368)
T TIGR00903 77 -------------------FNYEWLLACQLLAALGQPF-LLNAFAPAASQIRE-------ERRDLVISLLSFAMYLGIIF 129 (368)
T ss_pred -------------------ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHH
Confidence 1678899999999999986 45556666999997 44999999999999999999
Q ss_pred HHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCC
Q 008934 189 AVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (548)
Q Consensus 189 gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 225 (548)
++.+++++.+++|||..|++.+++.++..++.....|
T Consensus 130 ~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 130 ALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999877766555544444433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-21 Score=204.06 Aligned_cols=169 Identities=10% Similarity=0.132 Sum_probs=142.6
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
+.++..+...++..+..+.....+|.+ .+++|+|+.+++++.+.+.++..++++++|+++||+ |||+++.++.++..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHH
Confidence 333444445555555555556666666 557999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+.++.+.+. +.+.+++.|++.|++.|...+...+++.+++|++ +|+++++
T Consensus 101 ~~~~~~~~~-----------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~-------~rg~~~~ 150 (434)
T PRK11663 101 INILFGFSS-----------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT-------ERGGWWA 150 (434)
T ss_pred HHHHHHHHh-----------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHH-------HHHHHHH
Confidence 988888765 6778888899999999998999999999999984 4899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHH
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 217 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~ 217 (548)
+.+...++|..++|.+.+++.+++||++.|++.++..++..
T Consensus 151 ~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~ 191 (434)
T PRK11663 151 IWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVG 191 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998876555443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-22 Score=202.32 Aligned_cols=170 Identities=21% Similarity=0.296 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHH
Q 008934 23 IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLW 102 (548)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~ 102 (548)
++..++..++.....+.++.++.+++|.|+.+.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++..+..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 3466777777777888888788999999999999999999999999999999999996 999999999999999855555
Q ss_pred HhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHH
Q 008934 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (548)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (548)
+++ +.+.++++|++.|++.+...+...+++.|.+|+++ |++++++.+...
T Consensus 81 ~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~ 130 (352)
T PF07690_consen 81 FAS-----------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE-------RGRAFGILSAGF 130 (352)
T ss_dssp HHC-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC-------HHHHHHHHHHHH
T ss_pred hhh-----------------------hHHHHhhhccccccccccccccccccccccchhhh-------hhhccccccchh
Confidence 544 56689999999999999999999999999999954 999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhc
Q 008934 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLA 223 (548)
Q Consensus 183 ~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~ 223 (548)
++|.+++|.+++++.+..+|++.|++.++..++..++....
T Consensus 131 ~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~ 171 (352)
T PF07690_consen 131 SLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILF 171 (352)
T ss_dssp HHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhh
Confidence 99999999999999988999999999988877776643333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-20 Score=191.02 Aligned_cols=346 Identities=19% Similarity=0.206 Sum_probs=251.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHH
Q 008934 21 FIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVL 100 (548)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l 100 (548)
.+....++..+..+...+.++.|. +++|.++.+.+++.+...++..++.++.|+++||+ ||||.+.++.++..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence 445577788888888888898886 56799999999999999999999999999999996 9999999999999999888
Q ss_pred HHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHH
Q 008934 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (548)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (548)
....+ +.+.+.+.|++.|++.+...+...+++.|.+|+++ |++++++.+.
T Consensus 81 ~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 130 (352)
T cd06174 81 LAFAS-----------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE-------RGRALGLFSA 130 (352)
T ss_pred HHHhc-----------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc-------hhhhhhHHHH
Confidence 87755 67889999999999999999999999999999844 8999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccCCCCCcch
Q 008934 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQAT 260 (548)
Q Consensus 181 ~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (548)
..++|..++|.+++.+.+..+|+..|++.++..++..+...... +..........-.
T Consensus 131 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~---------- 187 (352)
T cd06174 131 GFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------RLLLLLALAFFLL---------- 187 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH----------
Confidence 99999999999999999988999999988877666655443322 1111100000000
Q ss_pred hhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCceecCccc
Q 008934 261 EEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSF 340 (548)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~~~~~ 340 (548)
... ..........+..+.. +.. ....+..
T Consensus 188 --------------------~~~--------------------------~~~~~~~~~~~~~~~~--~~~---~~~~~~~ 216 (352)
T cd06174 188 --------------------SFG--------------------------YYGLLTYLPLYLQEVL--GLS---AAEAGLL 216 (352)
T ss_pred --------------------HhH--------------------------HHHHHHHHHHHHHHhc--CCC---HHHHHHH
Confidence 000 0000000000000000 000 0001122
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccc
Q 008934 341 NIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKL-RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM 419 (548)
Q Consensus 341 ~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (548)
.....+..++..++ ..++.+|. ++++ .+..+.++..++.+.+...+
T Consensus 217 ~~~~~~~~~i~~~~----~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~---------------------- 263 (352)
T cd06174 217 LSLFGLGGILGALL----GGLLSDRL-------GRRRLLLLIGLLLAALGLLLLALAP---------------------- 263 (352)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHH-------HhhhHHHHHHHHHHHHHHHHHHHhc----------------------
Confidence 33333333443333 23333443 3334 67788888888888777654
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCC
Q 008934 420 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK 499 (548)
Q Consensus 420 s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~ 499 (548)
+.+.+....++.+++++...+.......+..|++.||+.+|+.+...++|..+++.+.+.+.+.
T Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~---------------- 327 (352)
T cd06174 264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT---------------- 327 (352)
T ss_pred cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------
Confidence 4677888899999999999999999999999999999999999999999999999999886531
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 008934 500 GHYDYYYWLLTALSMANFLYYL 521 (548)
Q Consensus 500 ~~~~~~f~~~~~~~~v~~~~~~ 521 (548)
.++...|...+++.+++.++++
T Consensus 328 ~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 328 GGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred cCcchHHHHHHHHHHHHHHHhe
Confidence 1245667777777777766543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-20 Score=192.74 Aligned_cols=178 Identities=15% Similarity=0.137 Sum_probs=150.8
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
.|..+.+.+..++..++.....+.+|. +++++|.|+.+.+++.+.+.++..++.++.|+++||+ ||||++..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFA 81 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence 455555555666666776666666665 4789999999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
++.++...++ +.+.+.+.|++.|++.+...+...+++.|.+|+ ++|++++
T Consensus 82 ~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 131 (385)
T TIGR00710 82 LSSLGLALSN-----------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPG-------EELSRIY 131 (385)
T ss_pred HHHHHHHHHc-----------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc-------HHHHHHH
Confidence 9888887765 677889999999999999999999999999997 4499999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCC
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 225 (548)
++.+...++|..++|.+++++.++.+|+..|++.++..++..+......|
T Consensus 132 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (385)
T TIGR00710 132 SILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILP 181 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999899999999887766655554444333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.6e-21 Score=200.75 Aligned_cols=386 Identities=9% Similarity=-0.008 Sum_probs=226.5
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
.|.++.+....++..++++.+.++++.|+++++|+|+.+.|++.+++.+...+++++.|+++||+ ||||++.++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~ 87 (420)
T PRK09528 9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLL 87 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence 46778877888888998999999999999999999999999999999999999999999999996 99999988766655
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
++..........+. .......+..+.++..+...+...+...++.++.. ++++..+
T Consensus 88 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~ 143 (420)
T PRK09528 88 VLFGPFFIYVFAPL-------------------LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS-----RRSGFEY 143 (420)
T ss_pred HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH-----hhccccc
Confidence 44332221110000 00011122222233333333333333333332211 2256677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCC-C----CCchhHHHHHHHHHhh
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKAN-T----SLLPGLTQVLVASFKN 250 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~ 250 (548)
+......++|..++|.+++++.+ .+|+.+|++.++..++..+..+...++.++++.. + ++.....+.....+++
T Consensus 144 g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 222 (420)
T PRK09528 144 GRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKL 222 (420)
T ss_pred hhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccC
Confidence 88888889999999999999876 4899999988776666555544433322211100 0 0000000000111111
Q ss_pred ccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHH-HHHHHHHhhccCCC
Q 008934 251 RRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEE-LKALIKASSMDRHV 329 (548)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 329 (548)
+.+.. . ...... .. .+ ...... ....+.....+..
T Consensus 223 ~~~~~-------------------l-~l~~~~-~~---------------------~~-~~~~~~~~~~~~~~~~~~~~- 258 (420)
T PRK09528 223 PKFWF-------------------L-VLYVIG-VA---------------------CF-YDVFDQQFPNFFASFFATPE- 258 (420)
T ss_pred CCeEe-------------------e-hHHHHH-HH---------------------HH-HHHHHHHHHHHHHHHHhccC-
Confidence 10000 0 000000 00 00 000000 0011001100111
Q ss_pred CCCceecCc---ccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008934 330 TPNFEIPSG---SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAIN 406 (548)
Q Consensus 330 g~~~~i~~~---~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~ 406 (548)
.+.. .+..++.+...+ ..+..+++.+| .++++.+..+.++.++++..+.+.+
T Consensus 259 -----~~~~~~g~~~~~~~~~~~~--------~~~~~g~l~dr---~g~~~~~~~~~~l~~~~~~l~~~~~--------- 313 (420)
T PRK09528 259 -----QGTRVFGYLNSFQVFLEAL--------IMFFAPFIINR---IGAKNALLLAGTIMAVRIIGSGFAT--------- 313 (420)
T ss_pred -----cchHHHHHHHHHHHHHHHH--------HHHHHHHHHHH---hCcchhhHHHHHHHHHHHHHHHhcc---------
Confidence 1111 222222222222 22334444444 5555667778888888777766544
Q ss_pred cCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhc
Q 008934 407 EGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVDDITK 485 (548)
Q Consensus 407 ~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~~g~~lg~~~~~~i~~~~~ 485 (548)
+.++++...++.+++.....+...+++.+..|++.+++..+. +++...+|+.+|+.+.|.+.+..
T Consensus 314 -------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~- 379 (420)
T PRK09528 314 -------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI- 379 (420)
T ss_pred -------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 566777778888998888888888888888999999988766 67788999999999999876432
Q ss_pred CCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 008934 486 RGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK 525 (548)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~ 525 (548)
++...|...+++.++..++.+...+
T Consensus 380 ---------------G~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 380 ---------------GFQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred ---------------CchHHHHHHHHHHHHHHHHHHHHhc
Confidence 1456677777777766665554443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.7e-21 Score=196.74 Aligned_cols=353 Identities=14% Similarity=0.081 Sum_probs=222.3
Q ss_pred HHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 008934 33 TVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKP 112 (548)
Q Consensus 33 ~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 112 (548)
.|.+ ..+.+++.+++|+|+.+.+++.+++.++..+++++.|+++||+ |||+++.++.++..++.++..+++
T Consensus 19 ~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~------- 89 (377)
T TIGR00890 19 VYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD------- 89 (377)
T ss_pred Hhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH-------
Confidence 4444 4455677889999999999999999999999999999999996 999999999999999998888876
Q ss_pred CCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008934 113 PACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 192 (548)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i 192 (548)
+.+.++++|++.|++.+...+.....+.+.+|+ + |+++.++.....++|..+++.+
T Consensus 90 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~g~~~~~~~ 145 (377)
T TIGR00890 90 ----------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-K-------RGLASGIIIGGYGLGSFILSPL 145 (377)
T ss_pred ----------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-c-------cHHHHHHHHHhcchhHhHHHHH
Confidence 788899999999999998888888888888864 2 7899999999999999887777
Q ss_pred HHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccC-CCCCCchhHHHHHHHHHhhccCCCCCcchhhhhhcCCCCc
Q 008934 193 IVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSK-ANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSM 271 (548)
Q Consensus 193 ~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (548)
.+.+.+..|||+.|++.++..++..+..+...++.++++ +++++..+..+.....++++..
T Consensus 146 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 207 (377)
T TIGR00890 146 ITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQF------------------ 207 (377)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCcccchhhhhHHHHHcCccH------------------
Confidence 777778889999999988766655544433322111111 0101100000000000110000
Q ss_pred ccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCceecCc---ccchhhHHHH
Q 008934 272 RLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSG---SFNIFAILTL 348 (548)
Q Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~~~---~~~~~~~~~i 348 (548)
.......... ..+ ......... ....+ ++ .+.. .+.....+..
T Consensus 208 ------~~~~~~~~~~---------------~~~----~~~~~~~~~---~~~~~--~~----~~~~~~~~~~~~~~~~~ 253 (377)
T TIGR00890 208 ------WVLYLSFFLN---------------AVS----GLLLIGLYK---PYGQS--LG----LSDGFLVLAVSISSIFN 253 (377)
T ss_pred ------HHHHHHHHHH---------------hHH----HHHHHHHHH---HHHHH--cC----CCHHHHHHHHHHHHHHH
Confidence 0000000000 000 000000000 00001 11 1111 1122222222
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHH
Q 008934 349 TIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYL 428 (548)
Q Consensus 349 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~ 428 (548)
++ ..+...++.|| .++++.+.++.++.+++.+.+.... +...+.+....
T Consensus 254 ~~--------~~~~~g~l~dr---~g~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~ 302 (377)
T TIGR00890 254 GG--------GRPFLGALSDK---IGRQKTMSIVFGISAVGMAAMLFIP--------------------MLNDVLFLATV 302 (377)
T ss_pred HH--------HHHHHHHHHHH---HhhhhhhhHHHHHHHHHHHHHHHcc--------------------cchhHHHHHHH
Confidence 22 23333444444 4444556777777777776655432 11222333444
Q ss_pred HHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHH
Q 008934 429 VLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWL 508 (548)
Q Consensus 429 ~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 508 (548)
++.+++.+...+.......+..|++.||+++|+.+....+|..+++.+.+.+.+.. ++...|.+
T Consensus 303 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------------g~~~~f~~ 366 (377)
T TIGR00890 303 ALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI----------------GFEYTFIV 366 (377)
T ss_pred HHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh----------------chhhHHHH
Confidence 56666666666666777888899999999999999999999999999999866322 24566777
Q ss_pred HHHHHHHHH
Q 008934 509 LTALSMANF 517 (548)
Q Consensus 509 ~~~~~~v~~ 517 (548)
.+++.++++
T Consensus 367 ~~~~~~~~~ 375 (377)
T TIGR00890 367 TGAFALTSL 375 (377)
T ss_pred HHHHHHHhc
Confidence 776666654
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-21 Score=205.18 Aligned_cols=184 Identities=10% Similarity=0.012 Sum_probs=136.6
Q ss_pred CcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhh--------cCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHH
Q 008934 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREY--------NMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRM 86 (548)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--------g~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~ 86 (548)
+.+.++...+..+........+.+..+. +++.+ |+++.+.+++.+++.++..++++++|+++||+ ||||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~ 87 (479)
T PRK10077 10 IFSITLVATLGGLLFGYDTAVISGTVES-LNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDS 87 (479)
T ss_pred HHHHHHHHHHHHHhcCcccceehHhHHH-HHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHH
Confidence 3444455444444444444333443333 45555 89999999999999999999999999999996 99999
Q ss_pred HHHHHHHHHHHHHHHHHhccc-CCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCC
Q 008934 87 IGFGCFTCLLGMVLLWSTTIL-PGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGT 165 (548)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 165 (548)
+.++.+++.++..+.+..... +.. ...+......++++|+++|++.|...+...++++|++|+++
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~-- 153 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSI------------GPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI-- 153 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccc------------cccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh--
Confidence 999999988887777653200 000 00011235678899999999999999999999999999844
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccCchhhhHHHHHHHHHHHHH
Q 008934 166 KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWKVGFGVPAVIMLLSALS 219 (548)
Q Consensus 166 ~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~--------~~~g~~~~f~i~~~~~~i~~~~ 219 (548)
|++++++......+|..+++.+++.+. +.+|||++|++.++..++..+.
T Consensus 154 -----rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~ 210 (479)
T PRK10077 154 -----RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML 210 (479)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH
Confidence 899999999999999999887765543 3568999999887766655443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-20 Score=194.72 Aligned_cols=178 Identities=12% Similarity=0.169 Sum_probs=153.1
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.++......+....+.+...+.+|.+ ++++|+|.++.+++.+.+.++..+++++.|+++||+ |||+++.++.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTEL-AHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHH-HHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence 556667777888888888888888765 779999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+.+++..++ +.+.+++.|++.|++.+...+...+++.|.+|++ +|+++++
T Consensus 81 ~~~l~~~~~-----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 130 (382)
T PRK10091 81 GNAMFTLSS-----------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG-------KVTAAVA 130 (382)
T ss_pred HHHHHHHhC-----------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH-------HhhHHHH
Confidence 998888766 7888999999999999998888888999998873 3888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCc
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~ 226 (548)
.......+|..++|.+++++.+..|||+.|++.++..++..+......|+
T Consensus 131 ~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~ 180 (382)
T PRK10091 131 GMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPD 180 (382)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99889999999999999999998999999999887666555444433343
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-23 Score=213.03 Aligned_cols=347 Identities=28% Similarity=0.380 Sum_probs=207.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCC
Q 008934 84 YRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGD 163 (548)
Q Consensus 84 k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 163 (548)
.|++++|.+++.+|.+++.+++ .|... .++.+...+++++.++++|.|+.+|++.++++||+++++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~-~~~~~-------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~ 66 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSA-IPPSL-------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD 66 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHH-TSSSC-------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred CHhhhHHHHHHHHHHHHhHHHH-hcchh-------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence 4889999999999999988877 44311 223356889999999999999999999999999999875
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceecc-CCCCCCchh-HH
Q 008934 164 GTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKS-KANTSLLPG-LT 241 (548)
Q Consensus 164 ~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~-~~ 241 (548)
+ ++|.++++++|+..|+|+.+++.+.+++.+++||.+.|.++++.++++++.++..+++++++ ++.+++..+ ..
T Consensus 67 ~----~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~ 142 (372)
T PF00854_consen 67 D----SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIK 142 (372)
T ss_dssp T----THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SH
T ss_pred h----hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHH
Confidence 4 66999999999999999999999999999999999999999999999999999988888776 556666665 44
Q ss_pred HHHHHHHhhccCCCCCcchhhhhhc-CCCCc-ccC-Ccchhh--hHHhhhhhcCC----CCC--CCCCCCCC----CCCc
Q 008934 242 QVLVASFKNRRTKLPTQATEEMYHH-GKGSM-RLM-PSENLR--FLNKACMAKHP----EQD--LTPDGRAS----NPNS 306 (548)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~-~~~~~~--~l~~~~~~~~~----~~~--~~~~~~~~----~~~~ 306 (548)
.+.....+++....+. ........ ...++ ... ...... ........... +.. ..+..... ..|.
T Consensus 143 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i 221 (372)
T PF00854_consen 143 LVLVAAFKKRKLAVPK-GSSWLDWALFQYSERSIFGIIVFIRAAVIFFPEIFFWALFCQVQRVEELKALIRFLPIFLFWI 221 (372)
T ss_dssp HHHHHHHHHHCCCH-H-HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHTTTSSTTTHHHCCHHHCHHHCCCHHH
T ss_pred HHHHHHHHHhhccccc-chHHHHHhhhhhhhhhhhhhhhhccchhhhhhhhhhcccCCccceeeeeeeeeeccccCeEEE
Confidence 4555555555554432 11111111 00000 000 000000 00000000000 000 00000000 0111
Q ss_pred cchHHHHHH---HHHHHHHhhccCCCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHH
Q 008934 307 LCTVEQVEE---LKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGL 383 (548)
Q Consensus 307 ~~~~~~~~~---~~~~~~~~~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~ 383 (548)
. ..+... .........+|..+++.+.+|+++++++|++.++++.|+++++++|+.+ ...+ +++..++.+|+
T Consensus 222 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~-~~~~---~~~~~k~~~G~ 295 (372)
T PF00854_consen 222 F--YWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLR-RGIQ---PSPPQKFGIGM 295 (372)
T ss_dssp H--HHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTT-T---------HHHHHHH-
T ss_pred E--eeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhh-hccc---chhhhhhhHHH
Confidence 0 011100 0111114455555664499999999999999999999999999999887 2222 78999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHH
Q 008934 384 LFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG 463 (548)
Q Consensus 384 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~ 463 (548)
++..++++.....+.+|......++ .++.+|.++.+++.+++|.+..+...+..++.+|++..+..+|++.
T Consensus 296 ~~~~~~~~~~~~v~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~ 366 (372)
T PF00854_consen 296 VFAILAMFVAAIVEIRRLCYAQPCG---------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWF 366 (372)
T ss_dssp HHHHHHHHTTTHHHH---HH----T---------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcccccC---------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHH
Confidence 9999999999888765553333332 3355778899999999999999999885555555554444444444
Q ss_pred H
Q 008934 464 A 464 (548)
Q Consensus 464 ~ 464 (548)
.
T Consensus 367 ~ 367 (372)
T PF00854_consen 367 A 367 (372)
T ss_dssp H
T ss_pred H
Confidence 3
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-21 Score=205.20 Aligned_cols=149 Identities=16% Similarity=0.123 Sum_probs=125.4
Q ss_pred HHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCC
Q 008934 42 LYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG 121 (548)
Q Consensus 42 ~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 121 (548)
..+++++|++.++++++.+.+.+...++.+++|+++||+ |||++++.+.++..++.++++.++
T Consensus 43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~---------------- 105 (455)
T TIGR00892 43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS---------------- 105 (455)
T ss_pred HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence 345789999999999999999999999999999999996 999999999998888888887755
Q ss_pred CcCCCccchHHHHH-HHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008934 122 CESATWSQLMPLYF-AFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL 200 (548)
Q Consensus 122 ~~~~~~~~~~~~~i-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~ 200 (548)
+.+.+++ .|++.|++.+...+...+++.+.+++ +|+++.++.+.+.++|..++|.+++++.+.+
T Consensus 106 -------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~ 170 (455)
T TIGR00892 106 -------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYR--------RRPLANGLAMAGSPVFLSTLAPLNQYLFESF 170 (455)
T ss_pred -------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHh--------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 4555554 46888999987666667788888852 2899999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHHHHHHHh
Q 008934 201 GWKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 201 g~~~~f~i~~~~~~i~~~~~~~ 222 (548)
|||++|++.+++.+++.+..++
T Consensus 171 gwr~~f~~~~~~~~~~~v~~~~ 192 (455)
T TIGR00892 171 GWRGSFLILGGLLLHCCVCGAL 192 (455)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988876655544433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-20 Score=191.35 Aligned_cols=157 Identities=8% Similarity=-0.003 Sum_probs=139.2
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
.|.++.+++..++..++...+.+.+|.|+. ++|+|+.++|++.+.+.++..+++++.|+++||+ ||||++.++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 366888888999999999999999999966 7899999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
++...+..++ +.+.+++.|+++|++.+...+...+.+.+..+++ +|++++
T Consensus 83 ~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 132 (381)
T PRK03633 83 AGCAGLGLMV-----------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR-------NRGRLL 132 (381)
T ss_pred HHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-------HHHHHH
Confidence 9888887765 6788999999999999998888888888888773 489999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchh
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKV 204 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g~~~ 204 (548)
++++...++|..+||.+++.+.+...++.
T Consensus 133 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~ 161 (381)
T PRK03633 133 AAYMMVYYLGTVLGQLLVSKVSTELMSVL 161 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchH
Confidence 99999999999999999999877543333
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-20 Score=193.27 Aligned_cols=366 Identities=12% Similarity=0.032 Sum_probs=235.4
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHH----HHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMI----GFGCF 92 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~----~~~~~ 92 (548)
|..+.+....++...++-...+++|.|++ ++|+|..+.|++.+++.+...+.+++.|.++||+ ||++.. ..+..
T Consensus 4 ~~~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~ 81 (382)
T TIGR00902 4 QPFRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASA 81 (382)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHH
Confidence 34455556677777777778899999985 7899999999999999999999999999999996 985433 22222
Q ss_pred HHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhH
Q 008934 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (548)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (548)
+..+ .+...++ +.+.+++.|.+++.+.+...|...++..+. + ++|+
T Consensus 82 l~~~--~~~~~~~-----------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~-------~~~~ 127 (382)
T TIGR00902 82 IFAA--AFSAGAH-----------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW--Q-------KQFG 127 (382)
T ss_pred HHHH--HHHHhhh-----------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH--H-------HHcC
Confidence 2221 1222222 678888899999999988888888886543 2 2367
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcc
Q 008934 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRR 252 (548)
Q Consensus 173 ~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (548)
+.++......++|.+++|.+++++.+++||+..|.+.+...++..+. ....++.+++++++++..+..+.....+|+++
T Consensus 128 ~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 206 (382)
T TIGR00902 128 LDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIG-FLIKPTIPPKDAIPEDESQGDSAFIALLKNPM 206 (382)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHcCCCCCCCccccccccccchhHHHHHcChH
Confidence 88899999999999999999999999999999998876543333322 22222211111100000000000111111111
Q ss_pred CCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCC
Q 008934 253 TKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPN 332 (548)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 332 (548)
. ..++-..... ............. ...+ .|
T Consensus 207 ~-------------------------~~~l~~~~l~------------------~~~~~~~~~~~~~---~l~~--~g-- 236 (382)
T TIGR00902 207 N-------------------------LRFLAAVCLI------------------QGAHAAYYGFSAI---YWQA--AG-- 236 (382)
T ss_pred H-------------------------HHHHHHHHHH------------------HHHHHHHHHHHHH---HHHH--CC--
Confidence 0 0000000000 0000111111111 0111 22
Q ss_pred ceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008934 333 FEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDD 412 (548)
Q Consensus 333 ~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 412 (548)
.+......... ...+.+....+..+|+.+| ++.++.+.+|.++.++.+..+++.+
T Consensus 237 --~s~~~~g~l~~-----~~~~~~i~~~~~~~~l~~r---~g~~~~l~~~~~~~~~~~~~~~~~~--------------- 291 (382)
T TIGR00902 237 --ISASATGLLWG-----IGVLAEIIIFAFSNKLFQN---CSARDLLLISAIACVGRWAIIGAIE--------------- 291 (382)
T ss_pred --CCHhHHHHHHH-----HHHHHHHHHHHHhHHHHhh---CCHHHHHHHHHHHHHHHHHHHHhHh---------------
Confidence 33322322222 2223333355566677777 7888889999999999998887765
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 008934 413 LRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG-AGLSAANLVASLIMNAVDDITKRGGNGG 491 (548)
Q Consensus 413 ~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~~g~~lg~~~~~~i~~~~~~~~~~~ 491 (548)
+.+.++...++.++.+++..+....++.+. |++.+++++++++ ...++|..+|+.+.|.+.+..+
T Consensus 292 -------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g------ 357 (382)
T TIGR00902 292 -------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG------ 357 (382)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 677788888999999999999999999988 9999999999986 5678999999999998764321
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 008934 492 WIPSNINKGHYDYYYWLLTALSMANFLY 519 (548)
Q Consensus 492 ~~~~~~~~~~~~~~f~~~~~~~~v~~~~ 519 (548)
...|+..+++.++++++
T Consensus 358 -----------~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 358 -----------AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred -----------HHHHHHHHHHHHHHHHH
Confidence 24577777777766554
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-20 Score=196.88 Aligned_cols=176 Identities=12% Similarity=0.068 Sum_probs=147.7
Q ss_pred CcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Q 008934 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (548)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 94 (548)
+|+..+.+.+..+++......+....+ .+++++|+++.+.+++.+++.++..+++++.|+++||+ ||||++..+.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~ 83 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW 83 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence 466666666655555555554444444 78999999999999999999999999999999999996 9999999999999
Q ss_pred HHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHH
Q 008934 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (548)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (548)
.++..+.+++. +.+.+++.|+++|++.+...|...+++.|++|+ ++|+++
T Consensus 84 ~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~rg~~ 133 (412)
T TIGR02332 84 GIASTATMFAT-----------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPA-------YFRARA 133 (412)
T ss_pred HHHHHHHHHhc-----------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH-------HHHHHH
Confidence 99999888766 678899999999999999999999999999998 459999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh------ccCchhhhHHHHHHHHHHHHHHHh
Q 008934 175 FSWYYVFVSASSIVAVTCIVYIQD------NLGWKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 175 ~~~~~~~~~ig~~~gp~i~~~l~~------~~g~~~~f~i~~~~~~i~~~~~~~ 222 (548)
+++++...++|.+++|.+++++.+ ..|||+.|++.++..++..++..+
T Consensus 134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~ 187 (412)
T TIGR02332 134 NALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF 187 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998864 369999999987766554444433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-19 Score=189.33 Aligned_cols=179 Identities=15% Similarity=0.146 Sum_probs=128.9
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHH-HHHHHHHHHhhccccchHHHH-HHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATN-FLPIVGALLADSYVGRYRMIG-FGCFTC 94 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~-~~~~~~G~laDr~~Grk~~~~-~~~~~~ 94 (548)
+..+..+...++.+++...+.+.++.|+++++|+|+++.|++.+...+... +.++.+|+ +||+ ||||.++ .+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~ 92 (393)
T PRK15011 15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLG 92 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHH
Confidence 556667778999999999999999999999999999999999877666555 55555555 9996 9998755 445555
Q ss_pred HHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHH
Q 008934 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (548)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (548)
.++..+..++. +.+.+++.+.+.+...+...|...++..|..++++ +..+..
T Consensus 93 ~~~~~~~~~~~-----------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 144 (393)
T PRK15011 93 VLACTLFAWNR-----------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG-----REAVMF 144 (393)
T ss_pred HHHHHHHHHhh-----------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc-----chHHHH
Confidence 56665555544 45555444444443344567777787777665532 112344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCC
Q 008934 175 FSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (548)
Q Consensus 175 ~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 225 (548)
.++.....++|.++||.+++++.+++|||..|++.++..++..+......|
T Consensus 145 ~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 145 SSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence 577888899999999999999999899999999888766655554444333
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-20 Score=192.13 Aligned_cols=154 Identities=10% Similarity=0.085 Sum_probs=136.6
Q ss_pred HHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCccc
Q 008934 38 PNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQ 117 (548)
Q Consensus 38 ~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 117 (548)
.....++++++|+|+.+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++..++..+.
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~------------ 80 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG------------ 80 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc------------
Confidence 3344457889999999999999999999999999999999996 999999999999999888888765
Q ss_pred ccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008934 118 LRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ 197 (548)
Q Consensus 118 ~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~ 197 (548)
+.+.++++|++.|++.+...+...+++.|.+|+ ++|++++++.....++|..++|.+++++.
T Consensus 81 -----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 142 (399)
T TIGR00893 81 -----------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPA-------SERATAVSIFNSAQGLGGIIGGPLVGWIL 142 (399)
T ss_pred -----------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH-------HHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999998 44999999999999999999999999999
Q ss_pred hccCchhhhHHHHHHHHHHHHHHHh
Q 008934 198 DNLGWKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 198 ~~~g~~~~f~i~~~~~~i~~~~~~~ 222 (548)
+..+|++.|++.++..++..+....
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 143 IHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred HhCCchHHHHHHHHHHHHHHHHhhh
Confidence 9899999999887766655544433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-19 Score=191.88 Aligned_cols=168 Identities=14% Similarity=0.135 Sum_probs=145.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Q 008934 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (548)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~ 92 (548)
+.+++......+..+.+.+..+...+.+ .++++++|+|+.+.+++.+.+.++..+++++.|+++||+ |||+++.++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~ 91 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIM-YLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIV 91 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence 3445666666667777777766554444 466889999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhH
Q 008934 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (548)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (548)
+..++..+..+++ +.+.+++.|++.|+|.|...+...+++.|.+|++ +|+
T Consensus 92 ~~~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~-------~r~ 141 (426)
T PRK12307 92 AYSVGTGLSGLAS-----------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH-------LKS 141 (426)
T ss_pred HHHHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh-------Hhh
Confidence 9999988888766 6788999999999999999999999999999984 489
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHH
Q 008934 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVI 212 (548)
Q Consensus 173 ~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~ 212 (548)
++.++...+.++|.++++.+.+.+.+.+||++.|++....
T Consensus 142 ~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 142 KASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred HhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 9999999999999999999999998889999999875543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-20 Score=194.45 Aligned_cols=177 Identities=16% Similarity=0.119 Sum_probs=144.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Q 008934 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (548)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~ 92 (548)
+.+|+.....+...+......+..... .+++.+++|+++.+.+++.+...++..++.++.|+++||+ |||+++..+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~ 90 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLAAMGFA-APAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSIL 90 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHH
Confidence 333455555555555555555544444 4456778999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhH
Q 008934 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (548)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (548)
+..++..+...+. +.+.+++.+++.|++.+...+...+++.|.+|++ +|+
T Consensus 91 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~r~ 140 (398)
T TIGR00895 91 LFSVFTLLCALAT-----------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR-------FRG 140 (398)
T ss_pred HHHHHHHHHHHcc-----------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHH-------hhc
Confidence 8888887777654 6777888999999999999999999999999974 489
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHH
Q 008934 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (548)
Q Consensus 173 ~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~ 221 (548)
+++++.....++|..++|.+++++.+..||+..|++.++..++..++..
T Consensus 141 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 189 (398)
T TIGR00895 141 TAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLM 189 (398)
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999989999999988655444444333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-19 Score=195.66 Aligned_cols=175 Identities=9% Similarity=0.051 Sum_probs=135.5
Q ss_pred CcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Q 008934 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (548)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 94 (548)
+++.+.......++.....+.+.+.++ ++++++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~ 111 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT 111 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence 345555555556666666666655555 56889999999999999999999999999999999996 9999999999888
Q ss_pred HHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHH
Q 008934 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (548)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (548)
.++.++.+.+. +.+.+++.|+++|++.+... ....++++++|++ +|+++
T Consensus 112 ~~~~~~~~~~~-----------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~-------~rg~a 160 (476)
T PLN00028 112 APAVFCMSLVS-----------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGK-------IVGTA 160 (476)
T ss_pred HHHHHHHHHhc-----------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChh-------heeHH
Confidence 88888777765 56778888999999988754 4556789999884 48999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh---------ccCchhhhHHHHHHHHHHHHHHHh
Q 008934 175 FSWYYVFVSASSIVAVTCIVYIQD---------NLGWKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 175 ~~~~~~~~~ig~~~gp~i~~~l~~---------~~g~~~~f~i~~~~~~i~~~~~~~ 222 (548)
+++.+...++|+.+++.+.+.+.. ..|||+.|++.+++.++..+..+.
T Consensus 161 ~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 161 NGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999887778888887766655432 248999999988766655444433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-19 Score=199.57 Aligned_cols=153 Identities=16% Similarity=0.069 Sum_probs=130.4
Q ss_pred HHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcc
Q 008934 37 TPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACD 116 (548)
Q Consensus 37 ~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 116 (548)
...+.+++.+++|++..+.+++.+++.++..++.+++|+++||+ |||+++++++++.+++.++.++++
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~----------- 253 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ----------- 253 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 34445567889999999999999999999999999999999996 999999999999999888888766
Q ss_pred cccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008934 117 QLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI 196 (548)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l 196 (548)
+.+.++++|++.|+|.|+..+...++++|.+|+ +.|++.+++......+|.++++.++.++
T Consensus 254 ------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~-------~~Rg~~~g~~~~~~~iG~ila~~la~~i 314 (742)
T TIGR01299 254 ------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ-------EKRGEHLSWLCMFWMIGGIYAAAMAWAI 314 (742)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999998 4599999999999999999999877665
Q ss_pred hhc-------------cCchhhhHHHHHHHHHHHHHH
Q 008934 197 QDN-------------LGWKVGFGVPAVIMLLSALSF 220 (548)
Q Consensus 197 ~~~-------------~g~~~~f~i~~~~~~i~~~~~ 220 (548)
... .+||+.|++.++..+++++..
T Consensus 315 l~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~ 351 (742)
T TIGR01299 315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGAL 351 (742)
T ss_pred HHhccchhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 543 358888887776555554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-19 Score=196.18 Aligned_cols=168 Identities=15% Similarity=0.148 Sum_probs=144.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Q 008934 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (548)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~ 92 (548)
+.+|+.+..+....++..+..+.....++ ++.+++|+|+.+++++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 93 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLT-EVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 34456556666666666666665555554 56789999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhH
Q 008934 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (548)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (548)
+..++.++..++. +.+.+++.|++.|++.+...+...+++.|.+|+ ++|+
T Consensus 94 ~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~ 143 (496)
T PRK03893 94 LFSVGTLACGFAP-----------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPK-------HLRN 143 (496)
T ss_pred HHHHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHH
Confidence 9999888888765 678899999999999999999999999999998 4589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHH
Q 008934 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVI 212 (548)
Q Consensus 173 ~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~ 212 (548)
+++++.+...++|..++|.+.+++.++++|++.|++.++.
T Consensus 144 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 144 KASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-19 Score=187.91 Aligned_cols=163 Identities=19% Similarity=0.192 Sum_probs=137.3
Q ss_pred HHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 008934 32 ATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAK 111 (548)
Q Consensus 32 ~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 111 (548)
+.....+-+|. +.+++|.+..++++..+++.++..++++++|+++||+ |||+++..+.+++.++.+++..++
T Consensus 31 ~~~~~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~------ 102 (413)
T PRK15403 31 TTDLIQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT------ 102 (413)
T ss_pred HHHhhccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC------
Confidence 33333444443 5779999999999999999999999999999999996 999999999999999988888765
Q ss_pred CCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 008934 112 PPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT 191 (548)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~ 191 (548)
+.+.++++|+++|++.+...+...+.+.|.+|+++ |++.+++.....++|..+||.
T Consensus 103 -----------------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~ 158 (413)
T PRK15403 103 -----------------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK-------GIKLMAIITSIVLVAPIIGPL 158 (413)
T ss_pred -----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999998777777788889998844 889999999999999999999
Q ss_pred HHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCc
Q 008934 192 CIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (548)
Q Consensus 192 i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~ 226 (548)
+++++.++.||++.|++.++..+++.+..+...|+
T Consensus 159 lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~ 193 (413)
T PRK15403 159 SGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPE 193 (413)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999988899999999888766665544443343
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-20 Score=192.32 Aligned_cols=174 Identities=14% Similarity=0.142 Sum_probs=151.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Q 008934 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (548)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~ 91 (548)
.+++|+.+....+..+.+.+..+......+. +++++|+|+.+.+++.+.+.++..++.++.|+++||+ |||+++.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~ 84 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAE-VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSI 84 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence 3566788788888888888888877777664 5889999999999999999999999999999999996 9999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhh
Q 008934 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (548)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 171 (548)
++..++.+++.++. +.+.+++.|++.|++.+...+...+++.|.+|+++ |
T Consensus 85 ~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-------~ 134 (405)
T TIGR00891 85 VLFSAGTLACGFAP-----------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL-------R 134 (405)
T ss_pred HHHHHHHHHHHHhc-----------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh-------h
Confidence 99888888887655 67888999999999999999999999999999844 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccC--chhhhHHHHHHHHHHH
Q 008934 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLG--WKVGFGVPAVIMLLSA 217 (548)
Q Consensus 172 ~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g--~~~~f~i~~~~~~i~~ 217 (548)
++++++.....++|..+++.+++.+.+..+ |++.|.+.++..++..
T Consensus 135 ~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 135 NKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888766 9999987665444443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-19 Score=187.38 Aligned_cols=171 Identities=12% Similarity=0.113 Sum_probs=140.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Q 008934 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (548)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~ 92 (548)
-+-||.+....+..++...+.+....+++.|+ +++|+++.+++++.+.+.++..++.++.|+++||+ ||||++..+.+
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~ 86 (402)
T TIGR00897 9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL 86 (402)
T ss_pred cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence 34467778888888888888888888899987 57999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhH
Q 008934 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (548)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (548)
+..++..++.... .. ..+.+.+++.|++.|+|.+...+...+.+.+.+|+ ++|+
T Consensus 87 ~~~~~~~~~~~~~-~~------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~-------~~~g 140 (402)
T TIGR00897 87 LWCVGHAAFIVFG-LG------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ-------DNLS 140 (402)
T ss_pred HHHHHHHHHHHHh-cc------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH-------HHHH
Confidence 9888876553211 00 11567778889999999988878888888898888 4499
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhhhccCchhhhHHHHH
Q 008934 173 SYFSWYYVFVSASS-IVAVTCIVYIQDNLGWKVGFGVPAV 211 (548)
Q Consensus 173 ~~~~~~~~~~~ig~-~~gp~i~~~l~~~~g~~~~f~i~~~ 211 (548)
+++++.+...++|. .++|.+++++.+.+||+..++....
T Consensus 141 ~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 141 SAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 99999999999996 6899999999888887666554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-19 Score=189.43 Aligned_cols=175 Identities=17% Similarity=0.181 Sum_probs=145.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Q 008934 14 GGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT 93 (548)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 93 (548)
+.+|..+.......+..+......+.+|.+ .+++|+|+.+.+++.+++.++..++.++.|+++||+ ||||++.++.++
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~ 82 (394)
T PRK11652 5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSI 82 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHH
Confidence 346666666666667777766666666655 689999999999999999999999999999999996 999999999998
Q ss_pred HHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHH
Q 008934 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (548)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (548)
..++..+...++ +.+.+++.|++.|++.+...+....+..|.++++ +|++
T Consensus 83 ~~~~~~~~~~~~-----------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~ 132 (394)
T PRK11652 83 FILGTLVALFAH-----------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT-------QLRH 132 (394)
T ss_pred HHHHHHHHHHHc-----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH-------HHHH
Confidence 888888877655 6788899999999999888888888888888763 3888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHH
Q 008934 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSF 220 (548)
Q Consensus 174 ~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~ 220 (548)
+.++...+..++..++|.+++++.+..||+.+|++.++..++..+..
T Consensus 133 ~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK11652 133 ANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSM 179 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Confidence 89998889999999999999999988899999998776555444333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-19 Score=185.08 Aligned_cols=174 Identities=13% Similarity=0.087 Sum_probs=147.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Q 008934 14 GGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT 93 (548)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 93 (548)
+|+|.++...+..++.....+..-..+|.. .+++|+|+++.+++.+.+.++..++++++|+++||+ ||||++..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPI-AEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 456778888788888877777777777764 679999999999999999999999999999999996 999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHH
Q 008934 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (548)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (548)
..++..+..+++ +.+.+++.|+++|++.|...+...+++.|.+|+++ |++
T Consensus 82 ~~i~~~l~~~~~-----------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~-------r~~ 131 (394)
T PRK03699 82 MILAVAGLMFSH-----------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ-------RGS 131 (394)
T ss_pred HHHHHHHHHHcc-----------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch-------HHH
Confidence 988888887755 67788999999999999999999999999998733 889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-ccCchhhhHHHHHHHHHHHHH
Q 008934 174 YFSWYYVFVSASSIVAVTCIVYIQD-NLGWKVGFGVPAVIMLLSALS 219 (548)
Q Consensus 174 ~~~~~~~~~~ig~~~gp~i~~~l~~-~~g~~~~f~i~~~~~~i~~~~ 219 (548)
+++..+...++|+.++|.+.+++.+ ..|||++|.+.++..++..++
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 132 RLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 9988888889999999999888764 579999999877765554443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-21 Score=201.33 Aligned_cols=367 Identities=13% Similarity=0.101 Sum_probs=236.3
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCC
Q 008934 46 REYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESA 125 (548)
Q Consensus 46 ~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (548)
.++++++.+.+++.+.+.+++.++++++|+++||+ |.|+++..+.++.++++++.+.+.
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa-------------------- 124 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAA-------------------- 124 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 36899999999999999999999999999999997 999999999999999999999877
Q ss_pred CccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCchh
Q 008934 126 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKV 204 (548)
Q Consensus 126 ~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~-~g~~~ 204 (548)
..+.+.+++.|+++|++.|...|+...+.+++.|++ +|++..++.+.+..+|.+++.+++|++.+. .||++
T Consensus 125 -~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~-------Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~s 196 (466)
T KOG2532|consen 125 -SIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN-------ERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPS 196 (466)
T ss_pred -HhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCch
Confidence 224457899999999999999999999999999994 499999999999999999999999999998 89999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccCCCCCcchhhhhhcCCCCcccCCcchhhhHHh
Q 008934 205 GFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNK 284 (548)
Q Consensus 205 ~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 284 (548)
+|++.+++.++..++++.... ++|++++..+ +.|..++++...+....
T Consensus 197 ifY~~g~~g~i~~~~w~~~~~----d~P~~h~~is-------------------~~El~~I~~~k~~~~~~--------- 244 (466)
T KOG2532|consen 197 IFYVFGIVGLIWFILWFLFYS----DSPSKHPNIS-------------------EKELKYIEKGKSEAHVK--------- 244 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----CCcccCCCCC-------------------HHHHHHHHhcccccccC---------
Confidence 999999877766555443322 2222222111 11111221110000000
Q ss_pred hhhhcCCCCCCCCCCCCCCCCc----------cchHHHHHHH----HHHHHHhhccCCCCCCceecCc-ccchhhHHHHH
Q 008934 285 ACMAKHPEQDLTPDGRASNPNS----------LCTVEQVEEL----KALIKASSMDRHVTPNFEIPSG-SFNIFAILTLT 349 (548)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~----~~~~~~~~~~~~lg~~~~i~~~-~~~~~~~~~ii 349 (548)
....+||. +....--++. ...+.+++++..+ ++++... .+.+++-+...
T Consensus 245 --------------~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL--~f~v~~~G~~salP~l~~~ 308 (466)
T KOG2532|consen 245 --------------KKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL--GFDVRETGFLSALPFLAMA 308 (466)
T ss_pred --------------CCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh--CCChhhhhHHHHHHHHHHH
Confidence 00112221 1110100110 1111144444334 4555554 33344444444
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCCCCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHH
Q 008934 350 IWIGLYDRAVLPLASKIKGKPCQLSLKLRM--GIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPY 427 (548)
Q Consensus 350 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~ 427 (548)
+...+...+.+.+..| .-. .+..+|+ .++....+++++.+++... . ..+..+..
T Consensus 309 ~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~~------------------~--~~~~a~~~ 364 (466)
T KOG2532|consen 309 IVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTSD------------------E--HRLLAVIL 364 (466)
T ss_pred HHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecCC------------------C--cchHHHHH
Confidence 4333333322222222 111 2333444 6777777777777776640 0 11222222
Q ss_pred HHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHH
Q 008934 428 LVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYW 507 (548)
Q Consensus 428 ~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~ 507 (548)
+.+.-...++..+..+.-..+.+|++ .+..+|+.++...+++.++|.+++.+.. . ++..+| ..+|+
T Consensus 365 l~~~~~~~g~~~~Gf~~~~~~~apq~-a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~--~t~~eW----------~~VF~ 430 (466)
T KOG2532|consen 365 LTIAIGLSGFNISGFYKNHQDIAPQH-AGFVMGIINFVGALAGFIAPLLVGIIVT-D--NTREEW----------RIVFL 430 (466)
T ss_pred HHHHHHHcccchhhhHhhhhhccchH-HHHHHHHHHHHHHHHHHHHHHheeeEeC-C--CCHHHH----------HHHHH
Confidence 22222223344444444444447776 8999999999999999999999988653 1 122334 67899
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 008934 508 LLTALSMANFLYYLACCKAY 527 (548)
Q Consensus 508 ~~~~~~~v~~~~~~~~~~~~ 527 (548)
+.+++.+++.++|.++....
T Consensus 431 i~a~i~~~~~i~f~~f~s~e 450 (466)
T KOG2532|consen 431 IAAGILIVGNIIFLFFGSGE 450 (466)
T ss_pred HHHHHHHHhchheeEeecCc
Confidence 99999999988887776433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-19 Score=190.84 Aligned_cols=176 Identities=13% Similarity=0.089 Sum_probs=129.7
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhH-HHH-----HHHHHHHHHHHHHHHHHHHhhccccchHHHHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTA-ATN-----IIFIWTAATNFLPIVGALLADSYVGRYRMIGF 89 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~-ag~-----i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~ 89 (548)
+|......+..+++.+.+.. ..+...++.++++.+..+ ..+ +.++..++..+++++.|+++||+ |||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 35555555677777776654 444555778888644422 122 24667788899999999999996 99999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccch
Q 008934 90 GCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKG 169 (548)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 169 (548)
+.+++.+++++++++++...+ +...+..+++.|+++|+|.|+..++..++++|++|+++
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~---------------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------ 151 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATI---------------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------ 151 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHH---------------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------
Confidence 999999999999886611100 00011248889999999999999999999999999854
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccCchhhhHHHHHHHHH
Q 008934 170 ALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWKVGFGVPAVIMLL 215 (548)
Q Consensus 170 ~r~~~~~~~~~~~~ig~~~gp~i~~~l~--------~~~g~~~~f~i~~~~~~i 215 (548)
|+++.++...+..+|..+|+.+..++. ..+|||++|++.++..++
T Consensus 152 -Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 152 -RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence 888888888777888888876654443 257999999987654443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-19 Score=189.63 Aligned_cols=179 Identities=15% Similarity=0.156 Sum_probs=132.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhh--cCChhHHHHHH-----HHHHHHHHHHHHHHHHHhhccccchH
Q 008934 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREY--NMETTAATNII-----FIWTAATNFLPIVGALLADSYVGRYR 85 (548)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--g~s~~~ag~i~-----~~~~~~~~~~~~~~G~laDr~~Grk~ 85 (548)
.+++|.........++|...........+.++.+++ +.++.+ +++. ++..++..++.++.|+++||+ |||+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~ 95 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKR 95 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHH
Confidence 334566666666777777776665556666767666 787774 5543 234455668888899999996 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCC
Q 008934 86 MIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGT 165 (548)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 165 (548)
++.++.+++.++.++++++++... ......+.+++.|+++|++.|+..+...+++.|.+|+++
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~-- 158 (438)
T PRK09952 96 MLMLTVWMMGIATALIGLLPSFST---------------IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK-- 158 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHH---------------HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC--
Confidence 999999999999999888651110 000012358888999999999999999999999999844
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccCchhhhHHHHHHHHH
Q 008934 166 KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWKVGFGVPAVIMLL 215 (548)
Q Consensus 166 ~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~--------~~~g~~~~f~i~~~~~~i 215 (548)
|++..+....+..+|..++..+..++. +++|||.+|++.++..++
T Consensus 159 -----rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 159 -----KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 888888888888888888877766654 257999999987765433
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=192.19 Aligned_cols=179 Identities=15% Similarity=0.185 Sum_probs=159.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Q 008934 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (548)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~ 92 (548)
+..++.+..+.++.++|++.=|.+...++ =.++.+|.+++..|++.+.+.+...+..|+.|+|+||| .||+++.+|.+
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~-~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~ 106 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLK-EVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIF 106 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhH-HHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHH
Confidence 44456677778889999998887766443 45888999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhH
Q 008934 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (548)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (548)
+++++.++.+++. .+|.+.+.|.+.|+|.+...|..+++++|.+|+++ |+
T Consensus 107 iW~~Av~~~~fs~-----------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~-------Rs 156 (493)
T KOG1330|consen 107 IWTLAVFASGFSN-----------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK-------RS 156 (493)
T ss_pred HHHHHHHHHHHHH-----------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh-------hh
Confidence 9999999999876 89999999999999999999999999999999955 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccC-chhhhHHHHHHHHHHHHHHHhc
Q 008934 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFLA 223 (548)
Q Consensus 173 ~~~~~~~~~~~ig~~~gp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~~ 223 (548)
++++++|+.+++|.++|..+++++.+..+ ||++|++.+++.++..++..+.
T Consensus 157 ~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f 208 (493)
T KOG1330|consen 157 RVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLF 208 (493)
T ss_pred HHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhh
Confidence 99999999999999999999999988776 9999999988777665554433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-19 Score=185.85 Aligned_cols=383 Identities=10% Similarity=0.041 Sum_probs=228.4
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.+|......++...++..+.++++.|+++++|+++.+.+++.+.+.+...+++++.|+++||+ ||||++..+.....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV 80 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 4567777788888999999999999999999999999999999999999999999999999996 999999887766554
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+...+......+.. .........+++++.+++.+...+...++..|..++ ++..++
T Consensus 81 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~~~~g 136 (396)
T TIGR00882 81 LFAPFFIYVFGPLL---------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN---------SNFEYG 136 (396)
T ss_pred HHHHHHHHHhhhHH---------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh---------cccccc
Confidence 43322211100000 000123456667888888888888887777664332 334566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCC------CchhHHHHHHHHHhh
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTS------LLPGLTQVLVASFKN 250 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 250 (548)
......++|.++||.+++.+.+ .+|+.+|++.+++.++..+..+...++.++++..++ +..+ .+.....+++
T Consensus 137 ~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 214 (396)
T TIGR00882 137 KARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASAFS-LKLALELFRQ 214 (396)
T ss_pred hhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCC-HHHHHHHHcC
Confidence 6677789999999999998865 599999998877666555444333222111100000 0000 0000000111
Q ss_pred ccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCC
Q 008934 251 RRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVT 330 (548)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 330 (548)
+ .+..+-..... . .............+....... .+
T Consensus 215 ~--------------------------~~~~~~l~~~~----------------~-~~~~~~~~~~~~~y~~~~~~~-~~ 250 (396)
T TIGR00882 215 R--------------------------KFWMFVLYVVG----------------V-ACVYDVFDQQFANFFTSFFAT-PQ 250 (396)
T ss_pred C--------------------------cHHHHHHHHHH----------------H-HHHHHHHHHHHHHHHHHhccc-cc
Confidence 0 00000000000 0 000001111111100111110 00
Q ss_pred CCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 008934 331 PNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGIS 410 (548)
Q Consensus 331 ~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 410 (548)
...........+..+.. .......+++.+| .++++.+.++.++.++++......+
T Consensus 251 ----~~~~~~g~~~~~~~i~~-----~~~~~~~g~l~~r---~g~~~~l~~~~~l~~l~~~~~~~~~------------- 305 (396)
T TIGR00882 251 ----QGTRVFGYVTTMGELLN-----ALIMFCAPLIINR---IGAKNALLIAGTIMSVRIIGSSFAT------------- 305 (396)
T ss_pred ----cchHHHHHHHHHHHHHH-----HHHHHHHHHHHHH---hccchhHHHHHHHHHHHHHHHHhcC-------------
Confidence 11111111111111111 1122233344444 5555667788887777776544433
Q ss_pred CCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 008934 411 DDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVDDITKRGGN 489 (548)
Q Consensus 411 ~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~~g~~lg~~~~~~i~~~~~~~~~ 489 (548)
+.+++.+..++.+++.........+...+..|++.+++..+. ++....+|+.+++.+.|.+.+..
T Consensus 306 ---------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~----- 371 (396)
T TIGR00882 306 ---------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI----- 371 (396)
T ss_pred ---------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc-----
Confidence 566677778888888877776677777778888888887776 67889999999999999876532
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 008934 490 GGWIPSNINKGHYDYYYWLLTALSMANFLYY 520 (548)
Q Consensus 490 ~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~ 520 (548)
++...|.+.+++.++..++.
T Consensus 372 -----------G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 372 -----------GFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred -----------ccHHHHHHHHHHHHHHHHHH
Confidence 25667778777776665543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-19 Score=182.75 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=139.3
Q ss_pred HHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 008934 32 ATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAK 111 (548)
Q Consensus 32 ~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 111 (548)
+.....+.+|.+. +++|+|+.+++++.+++.++..++.+++|+++||+ |||+++..+.++..++..++..+.
T Consensus 6 ~~~~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~------ 77 (377)
T PRK11102 6 AIDMYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ------ 77 (377)
T ss_pred HHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc------
Confidence 4445567888775 57999999999999999999999999999999996 999999999999999888888765
Q ss_pred CCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 008934 112 PPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT 191 (548)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~ 191 (548)
+.+.+.+.|++.|++.+...+...+++.|.+|++ +|++++++.+...++|..++|.
T Consensus 78 -----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~ 133 (377)
T PRK11102 78 -----------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKE-------EFSRMMSFVTLVMTIAPLLAPI 133 (377)
T ss_pred -----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778889999999999999999999999999884 4899999999999999999999
Q ss_pred HHHHhhhccCchhhhHHHHHHHHHHHHHHHhc
Q 008934 192 CIVYIQDNLGWKVGFGVPAVIMLLSALSFFLA 223 (548)
Q Consensus 192 i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~ 223 (548)
+++++.++.+|++.|++.++..++..+.....
T Consensus 134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 134 IGGWLLVWFSWHAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998999999998877666555444333
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=194.27 Aligned_cols=153 Identities=10% Similarity=0.018 Sum_probs=126.6
Q ss_pred HHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccC
Q 008934 41 ILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRN 120 (548)
Q Consensus 41 ~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 120 (548)
.+.+++++|++..+.|++.+.+.+++.++++++|+++||+ ||||++.++.++..++..+.+....
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------- 116 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLG-------------- 116 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHh--------------
Confidence 4467889999999999999999999999999999999996 9999999988887777666654210
Q ss_pred CCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008934 121 GCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL 200 (548)
Q Consensus 121 ~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~ 200 (548)
....+.+.+++.|+++|++.+...|...++++|++|+++ |+++++++....++|.++++.+..++.+..
T Consensus 117 ----~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~-------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~ 185 (467)
T PRK09556 117 ----SGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK-------RGRFLGFWNISHNLGGAGAGGVALWGANYF 185 (467)
T ss_pred ----cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc-------eeeeEEeeecccchhhhHHHHHHHHHHHhh
Confidence 001267889999999999999999999999999999854 899999999999999999999887776643
Q ss_pred ---CchhhhHHHHHHHHHHHHH
Q 008934 201 ---GWKVGFGVPAVIMLLSALS 219 (548)
Q Consensus 201 ---g~~~~f~i~~~~~~i~~~~ 219 (548)
+|+..|.+.++..++..+.
T Consensus 186 ~~~~~~~~f~~~g~~~~~~~i~ 207 (467)
T PRK09556 186 FDGHVIGMFIFPSIIALIIGFI 207 (467)
T ss_pred ccCcchhHHHHHHHHHHHHHHH
Confidence 5888888877655544333
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-18 Score=181.87 Aligned_cols=169 Identities=14% Similarity=0.060 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHH
Q 008934 23 IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLW 102 (548)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~ 102 (548)
+...+....++....+.+|.+ .+++|.|+.+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~lp~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~~ 86 (392)
T PRK10473 9 FALVLLYPAGIDMYLVGLPRI-AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCS 86 (392)
T ss_pred HHHHHHHHHHHHHHhhhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHHH
Confidence 334555555655555666655 678999999999999999999999999999999996 999999999999888888877
Q ss_pred HhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHH
Q 008934 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (548)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (548)
.++ +.+.+++.|+++|++.+...+...+++.|.+|+ ++|+++.++.+...
T Consensus 87 ~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~ 136 (392)
T PRK10473 87 LAE-----------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD-------RRRAKVLSLLNGIT 136 (392)
T ss_pred HhC-----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHH
Confidence 654 567788899999999999899999999999998 44999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhc
Q 008934 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLA 223 (548)
Q Consensus 183 ~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~ 223 (548)
++|..++|.+++++.+..||+..|++.++..++..++....
T Consensus 137 ~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~ 177 (392)
T PRK10473 137 CIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFI 177 (392)
T ss_pred HHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888899999998877666555544333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-19 Score=184.72 Aligned_cols=338 Identities=9% Similarity=0.026 Sum_probs=208.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccch----HHHHHHHHHHHHHHHH
Q 008934 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRY----RMIGFGCFTCLLGMVL 100 (548)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk----~~~~~~~~~~~~~~~l 100 (548)
..+...+++..+.+++|.|++ ++|.|..++|++.+++.+...++++++|.++||+ ||+ +.+.++..+. ....
T Consensus 12 ~~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~~~~ 87 (382)
T PRK11128 12 SYFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--AVAF 87 (382)
T ss_pred HHHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--HHHH
Confidence 355556777888899999985 6899999999999999999999999999999996 984 3333222221 1111
Q ss_pred HHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHH
Q 008934 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (548)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (548)
...++ +.+.+++.|++.+++.+...|...++..+..++ |+++++....
T Consensus 88 ~~~~~-----------------------~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~~---------~~~a~~~~~~ 135 (382)
T PRK11128 88 WFGAH-----------------------SFWLLFVAIGLFNLFFSPLVPLTDALANTWQKQ---------IGLDYGKVRL 135 (382)
T ss_pred HHhcc-----------------------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHhh---------ccCCcchHHH
Confidence 11112 678888899999999999999888887776322 5667777777
Q ss_pred HHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccCCCCCcch
Q 008934 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQAT 260 (548)
Q Consensus 181 ~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (548)
..++|.++||.+++++.+++||+..|++.++..++..+... ..++..++++++++..+..+.....++++..
T Consensus 136 ~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------- 207 (382)
T PRK11128 136 WGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPTIMPQGESRQQESAGWPAWKALLKEPTV------- 207 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCCCCCccccccccccccchHHHHHcChhH-------
Confidence 88999999999999999999999999887765444433322 2222111110000000000000111111100
Q ss_pred hhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCceecCccc
Q 008934 261 EEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSF 340 (548)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~~~~~ 340 (548)
...+-...... .+ ..........+. .+. | .+....
T Consensus 208 ------------------~~~~~~~~l~~-----------------~~-~~~~~~~~~~~~---~~~--g----~s~~~~ 242 (382)
T PRK11128 208 ------------------WRFLLCVSLLQ-----------------GS-HAAYYGFSAIYW---QAA--G----YSASTI 242 (382)
T ss_pred ------------------HHHHHHHHHHH-----------------HH-hHhHHHHHHHHH---HHC--C----CCHhHH
Confidence 00000000000 00 000000011100 111 1 222222
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccc
Q 008934 341 NIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMS 420 (548)
Q Consensus 341 ~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 420 (548)
..+..... +.+.......+|+.+| .+.++.+..+.++.+++++.+...+ +
T Consensus 243 g~~~~~~~-----~~~~~~~~~~g~l~~r---~~~~~~l~~~~~~~~~~~~~~~~~~----------------------~ 292 (382)
T PRK11128 243 GYLWSLGV-----VAEVLIFAFSNRLFRR---WSARDLLLLSAICGVVRWGLMGSTT----------------------A 292 (382)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHhhh----------------------h
Confidence 22222111 1122233445555555 6777778888888888887766554 6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Q 008934 421 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG-AGLSAANLVASLIMNAVDD 482 (548)
Q Consensus 421 ~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~~g~~lg~~~~~~i~~ 482 (548)
.+.+++..++.|+++++..+....+..+.. ++.+++++++.+ ...++|..+|+.+.|.+.+
T Consensus 293 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 293 LPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788889999999999999999888874 555789999886 5567888999999998764
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-18 Score=184.28 Aligned_cols=169 Identities=18% Similarity=0.188 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhHhhc---CChhHHHHHHHHH---HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 008934 24 ANEAFERMATVGFTPNMILYLCREYN---METTAATNIIFIW---TAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (548)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~lg---~s~~~ag~i~~~~---~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (548)
+..+++.+.... ..++..++.++++ .+..+.+.+.+.+ .++..++++++|+++||+ ||||++.++.+++.++
T Consensus 29 ~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~ 106 (432)
T PRK10406 29 SGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFG 106 (432)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH
Confidence 345666666554 5566678888884 5666544444444 444449999999999996 9999999999999999
Q ss_pred HHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHH
Q 008934 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (548)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (548)
.++.+++++... ........+++.|+++|+|.|+..|...++++|.+|+++ |+++.++
T Consensus 107 ~~~~~~~~~~~~---------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~-------rg~~~~~ 164 (432)
T PRK10406 107 SLVIACLPGYET---------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR-------KGFYASF 164 (432)
T ss_pred HHHHhhcCCchh---------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc-------ccHHHHH
Confidence 998887551110 000123568889999999999999999999999999854 8888898
Q ss_pred HHHHHHHHHHHHHHHHHHhh--------hccCchhhhHHHHHHHHHH
Q 008934 178 YYVFVSASSIVAVTCIVYIQ--------DNLGWKVGFGVPAVIMLLS 216 (548)
Q Consensus 178 ~~~~~~ig~~~gp~i~~~l~--------~~~g~~~~f~i~~~~~~i~ 216 (548)
.+...+.|..+++.+...+. +.+|||.+|++.++..++.
T Consensus 165 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 165 QYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 88888888888887655543 2579999999877655443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9e-19 Score=187.56 Aligned_cols=155 Identities=12% Similarity=0.030 Sum_probs=123.6
Q ss_pred HHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccc
Q 008934 39 NMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQL 118 (548)
Q Consensus 39 ~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 118 (548)
...+|+.++ |+|+.+.+++.+++.++..++++++|+++||+ |||+++.++.++..++.+++.+...
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~------------ 115 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPW------------ 115 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhc------------
Confidence 344577877 99999999999999999999999999999996 9999999999988888887776430
Q ss_pred cCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHH-HHHHHHHHhh
Q 008934 119 RNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI-VAVTCIVYIQ 197 (548)
Q Consensus 119 ~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~-~gp~i~~~l~ 197 (548)
...+.+.+++.|++.|++.|...+...+.+.+++|++ +|++++++++.+.++|+. .+|.++..+.
T Consensus 116 -------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 181 (452)
T PRK11273 116 -------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK-------ERGGIVSVWNCAHNVGGGLPPLLFLLGMA 181 (452)
T ss_pred -------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChH-------HHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 0125677888899999999998888888899999884 489999999999999874 4555443443
Q ss_pred hccCchhhhHHHHHHHHHHHHHHH
Q 008934 198 DNLGWKVGFGVPAVIMLLSALSFF 221 (548)
Q Consensus 198 ~~~g~~~~f~i~~~~~~i~~~~~~ 221 (548)
...||++.|++.++..++..++..
T Consensus 182 ~~~gw~~~f~i~~~~~~~~~~l~~ 205 (452)
T PRK11273 182 WFNDWHAALYMPAFAAILVALFAF 205 (452)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHH
Confidence 445999999988776555444333
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-18 Score=180.40 Aligned_cols=162 Identities=15% Similarity=0.160 Sum_probs=135.3
Q ss_pred HHHHHHhhHHHHHHH--HhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcc
Q 008934 29 ERMATVGFTPNMILY--LCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTI 106 (548)
Q Consensus 29 ~~~~~~~~~~~l~~y--l~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~ 106 (548)
...++++...++|.+ +++++|.|+.+++++.+++.++..++.+++|+++||+ |||+++..+.++..++..+...+.
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~- 92 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE- 92 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc-
Confidence 334444444455544 6789999999999999999999999999999999996 999999999988888887777654
Q ss_pred cCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHH
Q 008934 107 LPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS 186 (548)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 186 (548)
+.+.+++.|+++|++.+...+...+++.|.+|+++ +++.++......++|.
T Consensus 93 ----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 143 (401)
T PRK11043 93 ----------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK-------ANRVFATIMPLVALSP 143 (401)
T ss_pred ----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH-------HHHHHHHHHHHHHHHH
Confidence 67788899999999988888888899999998743 7888888888889999
Q ss_pred HHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHH
Q 008934 187 IVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (548)
Q Consensus 187 ~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~ 221 (548)
.++|.+++++.+++||+..|++.++..++..+..+
T Consensus 144 ~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 144 ALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988776665554443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=8e-18 Score=181.53 Aligned_cols=383 Identities=15% Similarity=0.097 Sum_probs=251.9
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.+-.+...+++.+++......-++-++ .++.-|+...+++..+..+-..+..+++|.++||+ .|||+++.+-++..+
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv-~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~ 87 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLV-TQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRAL 87 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Confidence 3344444577777777766655566554 46788999999999999999999999999999996 999999999988777
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
....+.+.... +..+.+.+++..++.|++.+...|+.++++.+.+|+++ ..++.+
T Consensus 88 ~~~~L~~l~~~------------------~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~-------L~~A~a 142 (524)
T PF05977_consen 88 VALLLAVLAFF------------------GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED-------LPAANA 142 (524)
T ss_pred HHHHHHHHHHh------------------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh-------HHHHHH
Confidence 66555543311 12367888888999999999999999999999999855 889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccCCCC
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLP 256 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (548)
+.....|+.-++||.++|.+....|-...|.+.++..++.+..+...+++..+++ .+..+..+.+...++..+
T Consensus 143 l~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~---~~~e~~~~~l~~G~ryv~---- 215 (524)
T PF05977_consen 143 LNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSS---LPRERFFSALREGLRYVR---- 215 (524)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc---cchhhhhhhHHHHHHHHh----
Confidence 9999999999999999999998889999999998877776655444433221111 111122222222221100
Q ss_pred CcchhhhhhcCCCCcccCCcchhh-hHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCcee
Q 008934 257 TQATEEMYHHGKGSMRLMPSENLR-FLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEI 335 (548)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i 335 (548)
.+ ..+. .+-...+.. ++ .........++..+. ++ .
T Consensus 216 --------~~----------~~l~~~l~~~~~~~-----------------l~-~~a~~aLlPl~a~~~----l~----~ 251 (524)
T PF05977_consen 216 --------SS----------PPLRSVLLRSFLFN-----------------LF-ASAVWALLPLFARDV----LG----G 251 (524)
T ss_pred --------cc----------hHHHHHHHHHHHHH-----------------Hh-hhHHHHhhhHHHHHH----hC----C
Confidence 00 0000 000000000 00 000000111111111 11 1
Q ss_pred cCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccc
Q 008934 336 PSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRA 415 (548)
Q Consensus 336 ~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (548)
.+..+..+.+. .-.+.+...+..+ ++.++ .+..+.+..+.++.+++++.+++..
T Consensus 252 ~a~~yGll~a~--~gvGai~Gal~~~---~l~~~---~~~~~lv~~~~~~~a~~~~~lal~~------------------ 305 (524)
T PF05977_consen 252 GASGYGLLLAA--FGVGAILGALLLP---RLRRR---LSSRRLVLLASLLFALALLLLALSP------------------ 305 (524)
T ss_pred cHHHHHHHHHH--HHHHHHHHHHHHH---Hhhcc---cCcchhhHHHHHHHHHHHHHHhcch------------------
Confidence 12222222211 1111122222333 33333 5555667788888888888877665
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCC
Q 008934 416 VVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPS 495 (548)
Q Consensus 416 ~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~ 495 (548)
+.|...+..++.|.+....++..++.+.+.+|+++||.+++++.+....+..+|..+.|.+.+..+
T Consensus 306 ----~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g---------- 371 (524)
T PF05977_consen 306 ----SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG---------- 371 (524)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------
Confidence 677788888999999999999999999999999999999999999999999999999999775432
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 008934 496 NINKGHYDYYYWLLTALSMANFLYYLAC 523 (548)
Q Consensus 496 ~~~~~~~~~~f~~~~~~~~v~~~~~~~~ 523 (548)
....+...+++.+++.++.+..
T Consensus 372 ------~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 372 ------VRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566556665555444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-18 Score=182.07 Aligned_cols=394 Identities=12% Similarity=0.066 Sum_probs=228.6
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccc-hHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGR-YRMIGFGCFTCL 95 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Gr-k~~~~~~~~~~~ 95 (548)
|+...+....++...++-...++++.|+++++|+|..+.|++.+++.++..++++++|+++||+ || |+++.++.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~ 80 (418)
T TIGR00889 2 KTTAKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGA 80 (418)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHH
Confidence 4455566677778888888889999999999999999999999999999999999999999995 65 778888887777
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCC-ccchhhHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGT-KSKGALQSY 174 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~ 174 (548)
++..+..+.+ +.+.+.+.|++.+++.+...+...++..+...+..+. .+...|.+.
T Consensus 81 ~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~ 137 (418)
T TIGR00889 81 LLLFFAAQVT-----------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRV 137 (418)
T ss_pred HHHHHHHHhc-----------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeee
Confidence 7776666544 5666778888888887777666665543322210000 000114444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCC-CCchhHH-HHHHHHHhhcc
Q 008934 175 FSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANT-SLLPGLT-QVLVASFKNRR 252 (548)
Q Consensus 175 ~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~ 252 (548)
++ .+|.++||.+++.+.....| .+|++.++..++..+.. ...++.+++++++ ....+.. .......|+++
T Consensus 138 ~G------~lG~~ig~~l~g~l~~~~~~-~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 209 (418)
T TIGR00889 138 MG------TIGFIAAMWAVSLLDIELSN-IQLYITAGSSALLGVFA-LTLPDIPVAKSTAKMSIKVMLGLDAFILFKNKR 209 (418)
T ss_pred eh------hHHHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHH-hcCCCCCCCccccccCHHHHhhhhHHHHhcCCC
Confidence 44 47888899888877432223 45666666555544432 2233322111111 0100000 00001111111
Q ss_pred CCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhc-cCCCCC
Q 008934 253 TKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSM-DRHVTP 331 (548)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lg~ 331 (548)
+.. -....++... ..+... .. ....+ +.....
T Consensus 210 ~~~--------------------~~~~~~~~~~------------------------~~~~~~--~~-~~~~~~~~g~~~ 242 (418)
T TIGR00889 210 MAI--------------------FFFFSMLLGA------------------------PLQITN--IF-GNGFLHEFGRNP 242 (418)
T ss_pred eee--------------------HHHHHHHHHh------------------------HHHHHH--Hh-HHHHHHHhcccc
Confidence 000 0000000000 000000 00 00000 000000
Q ss_pred Cc--eecC---cccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008934 332 NF--EIPS---GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAIN 406 (548)
Q Consensus 332 ~~--~i~~---~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~ 406 (548)
.. +... +....++.+..++ .....+++.+| +++++.+.++.++.++++..+....
T Consensus 243 ~~~~~~~~~~~g~~~~~~~i~~i~--------~~~~~g~l~dr---~g~r~~l~~~~~~~~v~~~l~~~~~--------- 302 (418)
T TIGR00889 243 EFADSFVVKNASIWMSLSQFSEIF--------FILTIPFFLKR---FGIKKVMLLSLVAWALRFGFFAYGD--------- 302 (418)
T ss_pred cccchhhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHH---hCcHHHHHHHHHHHHHHHHHHHHcC---------
Confidence 00 0000 1122222222222 22334444455 6666778888888888876665422
Q ss_pred cCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhc
Q 008934 407 EGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG-AGLSAANLVASLIMNAVDDITK 485 (548)
Q Consensus 407 ~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~~g~~lg~~~~~~i~~~~~ 485 (548)
....+.+.+....++.+++++...+....++.+..|++.||+++|+.+ ...++|+.+||.+.|.+.+..+
T Consensus 303 ---------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g 373 (418)
T TIGR00889 303 ---------PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF 373 (418)
T ss_pred ---------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 001123445667888999999999999999999999999999999997 5688999999999998765432
Q ss_pred CCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008934 486 RGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 528 (548)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 528 (548)
... ..+|+..|...+++.++..+.++++.++..
T Consensus 374 ~~~----------~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 374 AYG----------TFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred ccc----------CCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 100 013567788888777777777666665443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-18 Score=187.54 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=128.2
Q ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCC
Q 008934 47 EYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESAT 126 (548)
Q Consensus 47 ~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (548)
++|++..+.|++.+.+.+++.++++++|+++||+ |||+++..+.++..++.++...+.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~--------------------- 127 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAA--------------------- 127 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHH---------------------
Confidence 7899999999999999999999999999999996 999999999998888877765432
Q ss_pred ccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-Cchhh
Q 008934 127 WSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL-GWKVG 205 (548)
Q Consensus 127 ~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~-g~~~~ 205 (548)
..+.+.+++.|+++|++.+...+....++.|++|+ ++|++++++.+.+.++|.+++|.+++++.+.+ ||+.+
T Consensus 128 ~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~ 200 (465)
T TIGR00894 128 GGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPP-------KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI 200 (465)
T ss_pred HcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence 01456788899999999999999999999999998 44999999999999999999999999999884 99999
Q ss_pred hHHHHHHHHHHHHHHHh
Q 008934 206 FGVPAVIMLLSALSFFL 222 (548)
Q Consensus 206 f~i~~~~~~i~~~~~~~ 222 (548)
|++.++..++..+..+.
T Consensus 201 f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 201 FYVFGIVGCAWSLLWFV 217 (465)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 99988766655444433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-19 Score=188.18 Aligned_cols=150 Identities=17% Similarity=0.218 Sum_probs=126.3
Q ss_pred HHhHhhcCC--------hhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 008934 43 YLCREYNME--------TTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPA 114 (548)
Q Consensus 43 yl~~~lg~s--------~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 114 (548)
.+..+++++ ..+.+++.+++.++..++.+++|+++||+ |||+++.++.+++.++..++....+
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~-------- 123 (481)
T TIGR00879 53 LPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF-------- 123 (481)
T ss_pred cHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc--------
Confidence 345566666 89999999999999999999999999996 9999999999999998888865431
Q ss_pred cccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHH-
Q 008934 115 CDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI- 193 (548)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~- 193 (548)
..+.+.++++|+++|+|.+...+...++++|.+|+++ |++++++.+...++|..++|.++
T Consensus 124 ------------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~-------r~~~~~~~~~~~~~G~~~~~~~~~ 184 (481)
T TIGR00879 124 ------------ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL-------RGALTSLYQLAITFGILVAYGFGS 184 (481)
T ss_pred ------------ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh-------hhhhhhHHHHHHHHHHHHHHHHHH
Confidence 1245678999999999999999999999999999844 89999999999999999999998
Q ss_pred --HHhhhccCchhhhHHHHHHHHHHHHHH
Q 008934 194 --VYIQDNLGWKVGFGVPAVIMLLSALSF 220 (548)
Q Consensus 194 --~~l~~~~g~~~~f~i~~~~~~i~~~~~ 220 (548)
+...+..+||+.|++.++..++..+..
T Consensus 185 ~~~~~~~~~~w~~~f~~~~~~~~~~~~~~ 213 (481)
T TIGR00879 185 GKVSLNNTLGWRIPLGLQLIPAGLLFLGL 213 (481)
T ss_pred HhhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 666677899999999666555444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.5e-18 Score=179.06 Aligned_cols=172 Identities=13% Similarity=0.098 Sum_probs=126.1
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHH-HHHHH-----HHHHHHHHHHHHhhccccchHHHHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNII-FIWTA-----ATNFLPIVGALLADSYVGRYRMIGF 89 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~-~~~~~-----~~~~~~~~~G~laDr~~Grk~~~~~ 89 (548)
++......+..+++.+....+....| .+.++++.++.+.+... +.... ...+++++.|+++||+ ||||++..
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 91 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGFYAT-AIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIV 91 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHH
Confidence 45555555566666666555444444 77889999888765443 22222 2246789999999996 99999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccch
Q 008934 90 GCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKG 169 (548)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 169 (548)
+.+++.++.++++++++...+ .......++++|+++|++.|...++...+++|++|+++
T Consensus 92 ~~~~~~~~~~l~~~~~~~~~~---------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------ 150 (434)
T PRK15075 92 TLSIMASGTLLIAFVPGYATI---------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------ 150 (434)
T ss_pred HHHHHHHHHHHHHhCCcHHHH---------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------
Confidence 999999999998876511100 00001246888999999999999999999999999854
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccCchhhhHHHHH
Q 008934 170 ALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWKVGFGVPAV 211 (548)
Q Consensus 170 ~r~~~~~~~~~~~~ig~~~gp~i~~~l~--------~~~g~~~~f~i~~~ 211 (548)
|++++++.....++|..+++.+++.+. +.+|||++|++...
T Consensus 151 -rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 151 -KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 899999988888888888887777653 46799999987544
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-18 Score=184.56 Aligned_cols=144 Identities=17% Similarity=0.158 Sum_probs=126.6
Q ss_pred HHhHhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCccccc
Q 008934 43 YLCREYNME---TTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLR 119 (548)
Q Consensus 43 yl~~~lg~s---~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 119 (548)
-+.+++|++ +.+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++..++.
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~-------------- 178 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP-------------- 178 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc--------------
Confidence 457799999 99999999999999999999999999996 999999999999988888887765
Q ss_pred CCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008934 120 NGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN 199 (548)
Q Consensus 120 ~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~ 199 (548)
+.+.+++.|++.|++.+...+...+++.|.+|+++ |+++.++......+|.+++|.++..+.+
T Consensus 179 ---------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~-------r~~~~~~~~~~~~~g~~~~~~~~~~~~~- 241 (505)
T TIGR00898 179 ---------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ-------RAIVGTLIQVFFSLGLVLLPLVAYFIPD- 241 (505)
T ss_pred ---------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh-------hHHHHHHHHHHHHHHHHHHHHHHHHhhH-
Confidence 78889999999999999999999999999999844 8999999888889999999988766643
Q ss_pred cCchhhhHHHHHHHHHHHHHH
Q 008934 200 LGWKVGFGVPAVIMLLSALSF 220 (548)
Q Consensus 200 ~g~~~~f~i~~~~~~i~~~~~ 220 (548)
||+.|++.++..++..+..
T Consensus 242 --wr~~~~~~~i~~~~~~~~~ 260 (505)
T TIGR00898 242 --WRWLQLAVSLPTFLFFLLS 260 (505)
T ss_pred --HHHHHHHHHHHHHHHHHHH
Confidence 9999998877666555444
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-17 Score=177.82 Aligned_cols=152 Identities=14% Similarity=0.099 Sum_probs=121.8
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
..+..+..+.+...+........+|.+ ++++|.|+.+.+++.+.+.++..+++++.|+++||+ ||||++.++..++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~ 103 (438)
T PRK10133 26 IPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYAL 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 333444455566666665556666655 999999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+.+++.... . ..+.+.++++|+++|+|.|...++.++++.|..|+++ |...++
T Consensus 104 ~~~l~~~~~-~-------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~-------~~~~~s 156 (438)
T PRK10133 104 GAALFWPAA-E-------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS-------GHFRLN 156 (438)
T ss_pred HHHHHHHHH-h-------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh-------HHHHHH
Confidence 987763211 0 1167889999999999999999999999998755532 555688
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 008934 177 WYYVFVSASSIVAVTCIVYIQ 197 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~ 197 (548)
.......+|..+||.+++.+.
T Consensus 157 ~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 157 LAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999998876543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.3e-18 Score=201.76 Aligned_cols=357 Identities=10% Similarity=0.033 Sum_probs=221.9
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChh--HHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETT--AATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT 93 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~--~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 93 (548)
.+.+...+...++..+...+....+..++...++.+.. ..+++.+++.+...++++++|+++||+ |||+++.++.++
T Consensus 8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~ 86 (1146)
T PRK08633 8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLF 86 (1146)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHH
Confidence 46666667777787777777777777788777777654 468889999999999999999999996 999999998877
Q ss_pred HHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHH
Q 008934 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (548)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (548)
..++.++..++.. ..+.+.+++.|+++|++.+...++..+++.|.+|+++ |++
T Consensus 87 ~~~~~~~~~~~~~--------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~-------r~~ 139 (1146)
T PRK08633 87 EVGLTLLIVLAYY--------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN-------LSR 139 (1146)
T ss_pred HHHHHHHHHHHHH--------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc-------chh
Confidence 6665555443320 0157889999999999999999999999999999854 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc--------c-CchhhhHHHHHHHHHHHHHHHhcCCceeccCCCC--C----Cch
Q 008934 174 YFSWYYVFVSASSIVAVTCIVYIQDN--------L-GWKVGFGVPAVIMLLSALSFFLASPFYVKSKANT--S----LLP 238 (548)
Q Consensus 174 ~~~~~~~~~~ig~~~gp~i~~~l~~~--------~-g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~--~----~~~ 238 (548)
++++...+.++|.++||.+++++.+. + +|.+.+.+..+...+..+++.+..++.+..++.. . ...
T Consensus 140 ~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (1146)
T PRK08633 140 ANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPK 219 (1146)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccccHH
Confidence 99999999999999999999998875 2 2333333333322222222222222221111110 0 001
Q ss_pred hHHHHHHHHHhhccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHH
Q 008934 239 GLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKA 318 (548)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (548)
.....+...++++.+. ...+.... .| +.........
T Consensus 220 ~~~~~~~~l~~~~~~~------------------------~~~~~~~~-----------------~~--~~~~~~~~~~- 255 (1146)
T PRK08633 220 LLWRNLKLLRSDRVLW------------------------LAIIGLSY-----------------FW--FISQLAQANF- 255 (1146)
T ss_pred HHHHHHHHHhcCcHHH------------------------HHHHHHHH-----------------HH--HHHHHHHHhh-
Confidence 1111111111110000 00000000 00 0000000000
Q ss_pred HHHHhhccCCCCCCceecCc-ccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 008934 319 LIKASSMDRHVTPNFEIPSG-SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVE 397 (548)
Q Consensus 319 ~~~~~~~~~~lg~~~~i~~~-~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~ 397 (548)
.......++ .+.. ....+ .....+...+...+.+++.+| ......+.++.++.+++++.+....
T Consensus 256 ---~~~~~~~~g----~s~~~~~g~~-----~~~~~ig~~~g~~~~g~l~~r---~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1146)
T PRK08633 256 ---PAYAKEVLG----LDNTFQVQYL-----LAASAIGIGIGSLLAGRLSGR---HIELGLVPLGALGLALSLFLLPTAP 320 (1146)
T ss_pred ---HHHHHHHhC----CCcHHHHHHH-----HHHHHHHHHHHHHHHHHHhCC---ceEccchhHHHHHHHHHHHHHHHhh
Confidence 001111111 2222 11111 111111111233345555555 4555566777777777777666543
Q ss_pred HHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008934 398 AARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIM 477 (548)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~ 477 (548)
+.+.+++..++.|++.++..++.++++.+.+|++.||+++|+.++..++|..+++.+.
T Consensus 321 ----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~ 378 (1146)
T PRK08633 321 ----------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALT 378 (1146)
T ss_pred ----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 5666777888899999999999999999999999999999999999999998888776
Q ss_pred HHhh
Q 008934 478 NAVD 481 (548)
Q Consensus 478 ~~i~ 481 (548)
+.+.
T Consensus 379 ~~l~ 382 (1146)
T PRK08633 379 TLFS 382 (1146)
T ss_pred HHHH
Confidence 6654
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-17 Score=180.18 Aligned_cols=182 Identities=14% Similarity=0.059 Sum_probs=138.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHh-----hcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHH
Q 008934 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCRE-----YNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRM 86 (548)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~ 86 (548)
.+.+++.+..+....+.+......+....+.+ ..+ .+.++.+.+++.+.+.++..++.++.|+++||+ |||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~ 88 (502)
T TIGR00887 11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKML-GYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRV 88 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHH
Confidence 34445666666666666666665555555543 332 345667788999999999999999999999996 99999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCc
Q 008934 87 IGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTK 166 (548)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 166 (548)
+.++.++..++.++..++.+. .+..+.+.++++|+++|++.|+..+....+++|.+|+++
T Consensus 89 ~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~--- 148 (502)
T TIGR00887 89 YGMELIIMIIATVASGLSPGS-----------------SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW--- 148 (502)
T ss_pred HHHHHHHHHHHHHHHHHccCc-----------------ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh---
Confidence 999999999988887765410 001125789999999999999999999999999999944
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------------------ccCchhhhHHHHHHHHHHHHH
Q 008934 167 SKGALQSYFSWYYVFVSASSIVAVTCIVYIQD-----------------------NLGWKVGFGVPAVIMLLSALS 219 (548)
Q Consensus 167 ~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~-----------------------~~g~~~~f~i~~~~~~i~~~~ 219 (548)
|++++++.+....+|..+++.+..++.. .++||+.|.+.++..++..+.
T Consensus 149 ----Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 149 ----RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF 220 (502)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765532 247999998776655544433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-18 Score=183.08 Aligned_cols=155 Identities=12% Similarity=0.047 Sum_probs=126.2
Q ss_pred HHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCccccc
Q 008934 40 MILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLR 119 (548)
Q Consensus 40 l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 119 (548)
..+++++ +|+|+++.+++.+++.++..++.++.|+++||+ |||+++.++.++..++..+.....+.
T Consensus 49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~------------ 114 (438)
T TIGR00712 49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWA------------ 114 (438)
T ss_pred hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccccc------------
Confidence 3446665 599999999999999999999999999999996 99999999988888887776543210
Q ss_pred CCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 008934 120 NGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD- 198 (548)
Q Consensus 120 ~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~- 198 (548)
..+.+.+.+.|++.|++.|...+.....+.|.+|+++ |++++++.+...++|+.++|.+.+.+.+
T Consensus 115 -------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~-------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~ 180 (438)
T TIGR00712 115 -------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE-------RGTIVSIWNCAHNIGGGIPPLLVLLGMAW 180 (438)
T ss_pred -------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc-------chhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 0145667788999999999998989999999999844 8999999999999999999888776444
Q ss_pred ccCchhhhHHHHHHHHHHHHHHHh
Q 008934 199 NLGWKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 199 ~~g~~~~f~i~~~~~~i~~~~~~~ 222 (548)
+.+||..|++.++..++..+..+.
T Consensus 181 ~~~w~~~f~~~~~~~~i~~~~~~~ 204 (438)
T TIGR00712 181 FNDWHAALYFPAICAIIVALFAFA 204 (438)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 568999999988776655444333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-18 Score=181.07 Aligned_cols=353 Identities=12% Similarity=0.114 Sum_probs=217.8
Q ss_pred HHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccchH-HHHHHHHHHHHHHHHHH
Q 008934 27 AFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY---VGRYR-MIGFGCFTCLLGMVLLW 102 (548)
Q Consensus 27 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~---~Grk~-~~~~~~~~~~~~~~l~~ 102 (548)
+..++.+..+.++++.|+++++|+|+.++|++.++..+...+..|+.|+++||. +|||| .++++.....++..++.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 445666677778899999999999999999999999999999999999999982 38866 45667777777777666
Q ss_pred HhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHH
Q 008934 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (548)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (548)
..++... ....+.+.+.+++.+++.+.......++..+..++. ++|++..++.....
T Consensus 89 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~~R~~~~~~~~~~~ 145 (437)
T TIGR00792 89 TTPDFSA-----------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDP------RERESLSTFRRFGA 145 (437)
T ss_pred hCCCCCc-----------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCH------HHHHHHHHHHHHHH
Confidence 5331110 113456677778888888888888888888887643 34899999988888
Q ss_pred HHHHHHHHHHHHHhh-------hccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCC-CCchhHHHHHHHHHhhccCC
Q 008934 183 SASSIVAVTCIVYIQ-------DNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANT-SLLPGLTQVLVASFKNRRTK 254 (548)
Q Consensus 183 ~ig~~~gp~i~~~l~-------~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 254 (548)
++|..+++.+.+.+. +..+|+..+.+.+++.++..++.+...++.+++++++ ++..+..+.+...++++.+.
T Consensus 146 ~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (437)
T TIGR00792 146 TLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLL 225 (437)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHH
Confidence 888877766655544 2458999998888776666555444443322111111 11111111111112221110
Q ss_pred CCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCce
Q 008934 255 LPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFE 334 (548)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 334 (548)
.. .....+..... ... ... ........++
T Consensus 226 ~~--------------------~~~~~~~~~~~-----------------------~~~---~~~-~~~~~~~~~~---- 254 (437)
T TIGR00792 226 IL--------------------CLAYLFYNLAF-----------------------NIK---NGV-QVYYFTYVLG---- 254 (437)
T ss_pred HH--------------------HHHHHHHHHHH-----------------------HHH---cch-hheeEeeecC----
Confidence 00 00000000000 000 000 0000011110
Q ss_pred ecC--cccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008934 335 IPS--GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDD 412 (548)
Q Consensus 335 i~~--~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 412 (548)
.+. ..+..+..+. ..+..++..++.+| .+.++.+.+|.++.+++++.+.+..
T Consensus 255 ~~~~~~~~~~~~~i~--------~ii~~~~~~~l~~r---~g~~~~~~~~~~~~~~~~~~~~~~~--------------- 308 (437)
T TIGR00792 255 DPELFSYMGSIAIVA--------GLIGVLLFPRLVKK---FGRKILFAGGILLMVLGYLIFFFAG--------------- 308 (437)
T ss_pred ChHHHHHHHHHHHHH--------HHHHHHHHHHHHHH---hCcHHHHHHHHHHHHHHHHHHHHcc---------------
Confidence 000 0111111222 22234444555555 5666777888888887776655432
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccC-------chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008934 413 LRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVDDITK 485 (548)
Q Consensus 413 ~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~ 485 (548)
.+.+.+.+..++.+++.+..++..+++..+.+| ++.+|.++|+.++...+|..+|+.+.+.+.+..+
T Consensus 309 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 309 ------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 134556667788889999888888888877765 5678999999999999999999999998776543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-19 Score=178.22 Aligned_cols=173 Identities=13% Similarity=0.098 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHHHhh---HHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 20 PFIIANEAFERMATVGF---TPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 20 ~~~~~~~~~~~~~~~~~---~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
+-++...++.-.+||-+ .....+++.++.++|.+|.|++.+.+.+.+-++-.+.|.++||. +.|+.+.+++++..+
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai 106 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHH
Confidence 55666777777777765 34566788999999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
..+++++++ +.+.+.+...+.|...|.-.|.....+..++|+++ |++..+
T Consensus 107 ~nil~Gfs~-----------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e-------RG~~~s 156 (448)
T COG2271 107 VNILFGFSP-----------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE-------RGTWWS 156 (448)
T ss_pred HHHHHhhhh-----------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc-------cCceEE
Confidence 999999877 67788888999999999999999999999999954 999999
Q ss_pred HHHHHHHHHHHHHHHHH--HHhhhccCchhhhHHHHHHHHHHHHHHHhc
Q 008934 177 WYYVFVSASSIVAVTCI--VYIQDNLGWKVGFGVPAVIMLLSALSFFLA 223 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~--~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~ 223 (548)
+.+.+-|+|+++.|++. +++..+++|+..|++++++.++..++.+..
T Consensus 157 iWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~ 205 (448)
T COG2271 157 IWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFL 205 (448)
T ss_pred EehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 899998899999999998777655555443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-17 Score=171.86 Aligned_cols=384 Identities=10% Similarity=-0.010 Sum_probs=234.1
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHh-HhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLC-REYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~-~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
|.++......++.....+...+ +...+. .++|+|++|.+++.+++.+.+.++.++.|++.||+ |.||++.++.++..
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~-l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSA-VTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 4444444443333333443333 444544 48999999999999999999999999999999996 99999999999998
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
+.+.+.+++... ...+++.+++.|++.|++ |...+.....+++++|++ +|++++
T Consensus 112 i~~~~~~~a~~~------------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~-------~rG~A~ 165 (462)
T PRK15034 112 IPCVWLGIAVQN------------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA-------KQGSAL 165 (462)
T ss_pred HHHHHHHHHHcc------------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh-------HhHHHH
Confidence 888888865200 012678899999999998 678899999999999984 489999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hc-------------cCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCc
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQ-----DN-------------LGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLL 237 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~-----~~-------------~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (548)
++.....|+|..+++.+...+. +. .+|+.++++..+..++..++.++..+..++ ++...
T Consensus 166 Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~~ 242 (462)
T PRK15034 166 GINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRASI 242 (462)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccCH
Confidence 9997777777776666554422 22 235666666666555555444443222111 11122
Q ss_pred hhHHHHHHHHHhhccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHH
Q 008934 238 PGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELK 317 (548)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (548)
.+ ....+|+++. +.- .+.+ .|+...+....
T Consensus 243 ~~----~~~vlk~~~~---------Wll------------slly-------------------------~~tFG~fvg~s 272 (462)
T PRK15034 243 AD----QLPVLQRLHL---------WLL------------SLLY-------------------------LATFGSFIGFS 272 (462)
T ss_pred HH----HHHHhCCCch---------hHH------------HHHH-------------------------HHHHHHHHHHH
Confidence 22 1122222210 000 0000 00000000000
Q ss_pred HHHHHhhccCCCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 008934 318 ALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVE 397 (548)
Q Consensus 318 ~~~~~~~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~ 397 (548)
..+ ....... . ............++...+..|+.+.+.|| .+..+.+.++.+.++++...+....
T Consensus 273 ~~l-p~~~~~~------~-----~~~~~l~~~~l~~l~~~l~rplgG~LADR---iG~~~vl~~~~i~~~i~~~~~~l~l 337 (462)
T PRK15034 273 AGF-AMLAKTQ------F-----PDVNILRLAFFGPFIGAIARSVGGAISDK---FGGVRVTLINFIFMAIFSALLFLTL 337 (462)
T ss_pred HHH-HHHHHHH------c-----ChHHHHHHHHHHHHHHHHHHHhhHHHHHh---cCchHHHHHHHHHHHHHHHHHHHHh
Confidence 000 0000000 0 11122222334556666677888888888 8888888888877777664433322
Q ss_pred HHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCc---------------------hhhH
Q 008934 398 AARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK---------------------SMSS 456 (548)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~---------------------~~rg 456 (548)
- . ....+.+.....++...++.++.+-...-++.+..|+ ++.|
T Consensus 338 p-------~---------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g 401 (462)
T PRK15034 338 P-------G---------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETA 401 (462)
T ss_pred c-------c---------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHH
Confidence 0 0 0112455555555555556666665566555555553 2678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008934 457 IASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 527 (548)
Q Consensus 457 ~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 527 (548)
.++|+......+|+++-|.+.+...+.+ +++...|+.+.+..++++.+.|....|+
T Consensus 402 ~v~G~v~a~G~~Ggf~~p~~~g~~~~~~---------------g~~~~~~~~~~~~~~~~~~~~w~~y~r~ 457 (462)
T PRK15034 402 AALGFISAIGAVGGFFIPQAFGMSLNMT---------------GSPVGAMKVFLIFYIVCVLLTWLVYGRR 457 (462)
T ss_pred HHHHHHHHHHHcccchhhHHHHHHHHHc---------------CCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8999999999999999998777654333 2456778888888888888877765554
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-18 Score=177.26 Aligned_cols=152 Identities=15% Similarity=0.194 Sum_probs=132.4
Q ss_pred HHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCccccc
Q 008934 40 MILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLR 119 (548)
Q Consensus 40 l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 119 (548)
...++++++|+|+.+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++...+.
T Consensus 17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~-------------- 81 (379)
T TIGR00881 17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST-------------- 81 (379)
T ss_pred hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh--------------
Confidence 34467889999999999999999999999999999999996 999999999999999988888765
Q ss_pred CCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Q 008934 120 NGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV-TCIVYIQD 198 (548)
Q Consensus 120 ~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp-~i~~~l~~ 198 (548)
+.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+...++|..++| .+++.+.+
T Consensus 82 ---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 145 (379)
T TIGR00881 82 ---------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE-------RGTWVSFWNCSHNVGGGLLPPLVLFGIAE 145 (379)
T ss_pred ---------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh-------heeeEeehhccchhHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999999844 89999999999999999999 56677777
Q ss_pred ccCchhhhHHHHHHHHHHHHHHHh
Q 008934 199 NLGWKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 199 ~~g~~~~f~i~~~~~~i~~~~~~~ 222 (548)
..+|+..|++.+++.++..+..+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 146 LYSWHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred cCCchhHHHHHHHHHHHHHHHHhe
Confidence 789999998887765554444433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=198.32 Aligned_cols=343 Identities=12% Similarity=0.014 Sum_probs=194.3
Q ss_pred HhHhhcCCh-hHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH--HHHHHHHHHHHhcccCCCCCCCcccccC
Q 008934 44 LCREYNMET-TAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF--TCLLGMVLLWSTTILPGAKPPACDQLRN 120 (548)
Q Consensus 44 l~~~lg~s~-~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 120 (548)
+..+.+.+. ...+++.+++.+...+.++++|+++||+ ||||++..... +...+..+.....
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~--------------- 105 (1140)
T PRK06814 42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL--------------- 105 (1140)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 333444433 4467778889999999999999999996 99998644222 2222222222211
Q ss_pred CCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008934 121 GCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL 200 (548)
Q Consensus 121 ~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~ 200 (548)
.+.+.++++|+++|++.+...|+..+++.+++|+++ |++++++...+.++|.++||.++|++.+..
T Consensus 106 -------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~-------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~ 171 (1140)
T PRK06814 106 -------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE-------LLGANALVEAGTFIAILLGTIIGGLATISG 171 (1140)
T ss_pred -------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc-------cchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 167889999999999999999999999999999854 899999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCC----CchhHHHHHHHHHhhccCCCCCcchhhhhhcCCCCcccCCc
Q 008934 201 GWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTS----LLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPS 276 (548)
Q Consensus 201 g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (548)
+|++.|...++..++++++.+.. ++.+..++..+ ...+....+....+++.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 229 (1140)
T PRK06814 172 NFVILVALLMGIAVLGWLASLFI-PKTGNAAPDLKIDRNIIRSTITLLKYAKADKRIWL--------------------- 229 (1140)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhC-CCCCCCCCCCeeccchHHHHHHHHHHHhcCchHHH---------------------
Confidence 99998854444444333333322 22211111111 11111111111111110000
Q ss_pred chhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCceecCc---ccchhhHHHHHHHHH
Q 008934 277 ENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSG---SFNIFAILTLTIWIG 353 (548)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~~~---~~~~~~~~~ii~~~~ 353 (548)
..+..... | .+ ........ ...+...++ .++. .+.....+..++...
T Consensus 230 ---~~~~~~~~-----------------~-~~-~~~~~~~~----p~~~~~~~g----~~~~~~g~~~~~~~~g~~ig~~ 279 (1140)
T PRK06814 230 ---AILGISWF-----------------W-LV-GAVVLSQL----PLLAKETLG----GDENVATLFLAVFSVGVAVGSF 279 (1140)
T ss_pred ---HHHHHHHH-----------------H-HH-HHHHHHHh----HHHHHHHcC----CchHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0 00 00000000 111111111 2221 222333333333322
Q ss_pred HHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHH
Q 008934 354 LYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL 433 (548)
Q Consensus 354 l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~ 433 (548)
+.+++.++ ....+.+..+.++.+++.+.+.+... ........+..-..-....+.|.+.+..+++|+
T Consensus 280 --------~~g~l~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 346 (1140)
T PRK06814 280 --------LASKLSEG---RITLLYVPIGALLMGLFGLDLAFASS--SVPAEPAQLKSILVFLSKRHGWRILIDLFGLAA 346 (1140)
T ss_pred --------HHHHHhCC---ceeeeeehHHHHHHHHHHHHHHhccc--ccccccccccchhhhhcccccHHHHHHHHHHHH
Confidence 23333333 22223344455555444443332100 000000000000000001256677788899999
Q ss_pred HHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008934 434 AMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 481 (548)
Q Consensus 434 g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~ 481 (548)
+.++.+++..+++.+.+|++.+|.++|+.++..++|..+|+.+.+.+.
T Consensus 347 ~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 347 AGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred HHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988865
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.8e-17 Score=173.43 Aligned_cols=385 Identities=13% Similarity=0.058 Sum_probs=228.9
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cchHH-HHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYV-----GRYRM-IGF 89 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~-----Grk~~-~~~ 89 (548)
+|....++...+......+.....++.|++ +.|.+..+.+... ..... .+..++.|.++|| + ||||. +.+
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr-~~~~~~Grrr~~ll~ 86 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDR-YTPPFLGRRRGWLLA 86 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHc-ccccCCCCchHHHHH
Confidence 455677777888888888888889999966 5699999999862 22233 3688999999999 6 99886 556
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccch
Q 008934 90 GCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKG 169 (548)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 169 (548)
+.+...++...+++.. | ..+.+.+.+.+++.+++.+...+...++..|++|+++
T Consensus 87 ~~i~~~~~~~~~a~~~--~------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------ 140 (491)
T PRK11010 87 TQLLLLVAIAAMGFLE--P------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------ 140 (491)
T ss_pred HHHHHHHHHHHHHHcC--C------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------
Confidence 6666666666665532 1 1257778888999999999999999999999999744
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCch-hHHHHHHHH
Q 008934 170 ALQSYFSWYYVFVSASSIVAVTCIVYIQD-NLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLP-GLTQVLVAS 247 (548)
Q Consensus 170 ~r~~~~~~~~~~~~ig~~~gp~i~~~l~~-~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 247 (548)
|+++.++...+.++|.++++.+++++.+ ..|||..|++.++..++..+..+.. ++.++++++++... ...+.+...
T Consensus 141 -rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~-~e~~~~~~~~~~~~~~~~~~l~~~ 218 (491)
T PRK11010 141 -RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLA-PEPTDTIPVPKTLEQAVVAPLRDF 218 (491)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhc-CCCccccccccchhhhHHHHHHHH
Confidence 8999999999999999999999999988 4699999999887666655444332 22111111111000 000000001
Q ss_pred HhhccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccC
Q 008934 248 FKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDR 327 (548)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (548)
++++. ....+-..... ........... ...+..
T Consensus 219 ~~~~~-------------------------~~~~ll~~~l~------------------~~~~~~~~~~~----~~~l~~ 251 (491)
T PRK11010 219 FGRNN-------------------------AWLILLLIVLY------------------KLGDAFAMSLT----TTFLIR 251 (491)
T ss_pred HcCcC-------------------------HHHHHHHHHHH------------------HHHHHHHHHHH----HHHHHH
Confidence 11000 00000000000 00000000000 111111
Q ss_pred CCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008934 328 HVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINE 407 (548)
Q Consensus 328 ~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~ 407 (548)
..| .+.............+...+...+...+.+| .+.++.+.++.++.+++.+.+.....
T Consensus 252 ~~G----~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-------~g~~~~l~i~~~l~~l~~l~~~~l~~--------- 311 (491)
T PRK11010 252 GVG----FDAGEVGLVNKTLGLLATIVGALYGGILMQR-------LSLFRALMIFGILQGVSNAGYWLLSI--------- 311 (491)
T ss_pred hcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 112 3333333322111111111111122223334 33334455555554544433222110
Q ss_pred CCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 008934 408 GISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRG 487 (548)
Q Consensus 408 ~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~ 487 (548)
...+.+.+.....+..+..++..+.......+.+|++.+++.+|+.+...++|..+++.++|.+.+..
T Consensus 312 ---------~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~--- 379 (491)
T PRK11010 312 ---------TDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH--- 379 (491)
T ss_pred ---------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 00134444445556555566666777788888899999999999999999999998888888876432
Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 008934 488 GNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACC 524 (548)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~ 524 (548)
++...|.+.+++.+++++..+.+.
T Consensus 380 -------------G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 380 -------------GWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred -------------ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 256778888888888877776653
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-17 Score=171.31 Aligned_cols=166 Identities=16% Similarity=0.139 Sum_probs=135.8
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 008934 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (548)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (548)
.++......++.....+...+.+|.|+++++|+|+.+.+++.+++.++..++++++|+++||+ ||||++.++.++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~ 80 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP 80 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 345566667777778888888888889999999999999999999999999999999999996 9999999999999998
Q ss_pred HHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHH
Q 008934 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (548)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (548)
.+++..+. .+.+.+++.|+++|++.+. .+...++++|.+|+++ |+++.++
T Consensus 81 ~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~-------r~~~~~~ 130 (366)
T TIGR00886 81 CLWAGLAV----------------------QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI-------QGTALGL 130 (366)
T ss_pred HHHHHHHh----------------------hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh-------hhHHHHH
Confidence 88877643 0467788899999999665 4567889999998844 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh----------ccCchhhh-HHHHHHHH
Q 008934 178 YYVFVSASSIVAVTCIVYIQD----------NLGWKVGF-GVPAVIML 214 (548)
Q Consensus 178 ~~~~~~ig~~~gp~i~~~l~~----------~~g~~~~f-~i~~~~~~ 214 (548)
.....++|..+++.+++.+.+ +.+|++.| ...++...
T Consensus 131 ~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 178 (366)
T TIGR00886 131 AAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILL 178 (366)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHH
Confidence 888888888888877776654 24899999 44344333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-16 Score=165.03 Aligned_cols=167 Identities=15% Similarity=0.114 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhcc----ccchH-HHHHHHHHHHHH
Q 008934 23 IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY----VGRYR-MIGFGCFTCLLG 97 (548)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~----~Grk~-~~~~~~~~~~~~ 97 (548)
+...+.+...+.-...-+|.|++ +.|+|.++.|++..+... .+..+++|+++||+ +|||| .+.++.++.+++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMT-VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 34555666677777788999988 459999999999766655 68999999999994 17776 677777777777
Q ss_pred HHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHH
Q 008934 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (548)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (548)
..++.+.. . ..+.+.+.+..++.+...+...+...+++.|.+|+++ |+++.++
T Consensus 82 ~~~l~~~~---~-----------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-------r~~~~~~ 134 (402)
T PRK11902 82 IAAMAFCP---P-----------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE-------RGAGAAV 134 (402)
T ss_pred HHHHHhcC---c-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh-------hhHHHHH
Confidence 77666542 0 1246667767677788888889999999999998844 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-cCchhhhHHHHHHHHHHHHH
Q 008934 178 YYVFVSASSIVAVTCIVYIQDN-LGWKVGFGVPAVIMLLSALS 219 (548)
Q Consensus 178 ~~~~~~ig~~~gp~i~~~l~~~-~g~~~~f~i~~~~~~i~~~~ 219 (548)
...+.++|.++++.+++++.+. .||+..|++.++..++..+.
T Consensus 135 ~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 135 KVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998885 49999999988766655443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-16 Score=164.61 Aligned_cols=173 Identities=13% Similarity=0.119 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Q 008934 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (548)
++.+....+...+.+....+.+| .+++++|+|+.++|++.+.+.++..+++++.|++.||+ ||||++.++.+++.++.
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~-~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVP-QFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 34444455555555543345554 55999999999999999999999999999999999996 99999999999999988
Q ss_pred HHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHH
Q 008934 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (548)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (548)
.+...+.. ..+.+.+++.|++.|+|.|...+..++++.+..|+++ |++..++.
T Consensus 83 ~l~~~~~~--------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 135 (410)
T TIGR00885 83 FLFWPAAE--------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST-------ATRRLNLA 135 (410)
T ss_pred HHHHHHHh--------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH-------HHHHHHHH
Confidence 77654320 1257888999999999999999999999999988744 78889999
Q ss_pred HHHHHHHHHHHHHHHHHhhh--------------------------ccCchhhhHHHHHHHHHHHHHH
Q 008934 179 YVFVSASSIVAVTCIVYIQD--------------------------NLGWKVGFGVPAVIMLLSALSF 220 (548)
Q Consensus 179 ~~~~~ig~~~gp~i~~~l~~--------------------------~~g~~~~f~i~~~~~~i~~~~~ 220 (548)
+...++|..+||.+++.+.. ..+||.+|.+.+++.++..++.
T Consensus 136 ~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 136 QSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887742 2369999988777655544333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-16 Score=163.76 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=123.0
Q ss_pred HhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 008934 34 VGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPP 113 (548)
Q Consensus 34 ~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 113 (548)
..+.+.+| .+++++|+|+++++++.+.+.++..++.++.|+++||+ ||||++.++.++..++.... ..+
T Consensus 17 ~~~~~~lp-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~-------- 85 (355)
T TIGR00896 17 TSVGPLLP-QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP-------- 85 (355)
T ss_pred ccCcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc--------
Confidence 33445555 45779999999999999999999999999999999996 99999999998877776665 333
Q ss_pred CcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008934 114 ACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI 193 (548)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~ 193 (548)
+.+.+++.|++.|+|.+...+..+.++.|.+|+ + |++++++.+...++|..+++.++
T Consensus 86 ---------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~g~~i~~~~~ 142 (355)
T TIGR00896 86 ---------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R-------VGLMTGLYSMALMGGAALAAAAT 142 (355)
T ss_pred ---------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h-------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999888888888888863 2 79999999999999999999999
Q ss_pred HHhhhcc--CchhhhHHHHHHHHHH
Q 008934 194 VYIQDNL--GWKVGFGVPAVIMLLS 216 (548)
Q Consensus 194 ~~l~~~~--g~~~~f~i~~~~~~i~ 216 (548)
+.+.++. +|+..|.+.++..++.
T Consensus 143 ~~l~~~~~~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 143 VPLAQHSGGHWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 9887765 3898887766544433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-16 Score=166.64 Aligned_cols=157 Identities=17% Similarity=0.156 Sum_probs=115.2
Q ss_pred HHHHHHhHhhc--CChhHHHHHHHH-----HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 008934 39 NMILYLCREYN--METTAATNIIFI-----WTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAK 111 (548)
Q Consensus 39 ~l~~yl~~~lg--~s~~~ag~i~~~-----~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 111 (548)
++..++.+++. .++++.+.+.+. ..+...+++++.|+++||+ ||||++.++.++..++..++.++.+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~-- 90 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYAT-- 90 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhh--
Confidence 35555555544 445555554443 2233346789999999996 9999999999999999888887552111
Q ss_pred CCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 008934 112 PPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT 191 (548)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~ 191 (548)
........+++.|+++|++.+...+...+++.|.+|+++ |++..++.+....+|..+++.
T Consensus 91 -------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~G~~i~~~ 150 (394)
T TIGR00883 91 -------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK-------RGFYGSFQQVGAPVGLLLAAL 150 (394)
T ss_pred -------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc-------chHHHHHHHHHHHHHHHHHHH
Confidence 000012357888999999999999999999999999854 899999999999999999998
Q ss_pred HHHHhh--------hccCchhhhHHHHHHHHHHHH
Q 008934 192 CIVYIQ--------DNLGWKVGFGVPAVIMLLSAL 218 (548)
Q Consensus 192 i~~~l~--------~~~g~~~~f~i~~~~~~i~~~ 218 (548)
+++.+. +.++|+.+|.+.++..+++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 151 TVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred HHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence 776653 356899999887765554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-16 Score=167.03 Aligned_cols=435 Identities=11% Similarity=0.042 Sum_probs=247.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhc---cccchHHHHHH-HHHH
Q 008934 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADS---YVGRYRMIGFG-CFTC 94 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr---~~Grk~~~~~~-~~~~ 94 (548)
...+....+.-.+++-...++++.|+ +++|.++..++++..+..+...+.+|+.|+++|| ++||||.++++ .+..
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~ 84 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV 84 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence 44455566666777777788888886 5899999999999999999999999999999995 24999999885 4455
Q ss_pred HHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHH
Q 008934 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (548)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (548)
.++..+++.+.+...... ++.+ ........+..+++..+..++.....+...++++|.+|++++ +++.+
T Consensus 85 ~~~l~ll~~~~~~~~~~~---~~~~---~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~-----~~~~a 153 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFG---DNLD---KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR-----RTRIA 153 (477)
T ss_pred HHHHHHHHhCchhhhhcc---cccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH-----HHHHH
Confidence 556666665442211100 0000 000001123445555566678888888999999999998652 24689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--hhcc-------------CchhhhHHHHHHHHHHHHHHHhcCCceeccCCCC-----
Q 008934 175 FSWYYVFVSASSIVAVTCIVYI--QDNL-------------GWKVGFGVPAVIMLLSALSFFLASPFYVKSKANT----- 234 (548)
Q Consensus 175 ~~~~~~~~~ig~~~gp~i~~~l--~~~~-------------g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~----- 234 (548)
+++.....++|+++|+.++++. .+.. +.+..|++.+++.+++.++..+..++++..++++
T Consensus 154 ~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~ 233 (477)
T TIGR01301 154 NAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE 233 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh
Confidence 9999999999999999998865 2211 5688999988888877777666555543211110
Q ss_pred ------CCchhHHHHHHHHHhhccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccc
Q 008934 235 ------SLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLC 308 (548)
Q Consensus 235 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (548)
+......+.++.++++ +|+ .-.. +-....+.|+..-... ++
T Consensus 234 ~~~~~~~~~~~~~~~i~~~~~~----mP~-~m~~----------l~~vqffsW~a~f~~~------------------~y 280 (477)
T TIGR01301 234 AAPPSKHGEEAFFGELFGAFKY----LPR-PVWI----------LLLVTCLNWIAWFPFI------------------LF 280 (477)
T ss_pred cccccccchhhhHHHHHHHHHH----CCH-HHHH----------HHHHHHHHHHHHHHHH------------------Hh
Confidence 0001111222222222 111 0000 0011112222211110 11
Q ss_pred hHHHHHHHHHHHHHhhccCCCCCCceec-CcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHH
Q 008934 309 TVEQVEELKALIKASSMDRHVTPNFEIP-SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFST 387 (548)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~lg~~~~i~-~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~ 387 (548)
....+.+ ..++...-+.... .-++. ..+-...+.+... +++.++.++.++.+. .++.-.++.++.+
T Consensus 281 ~T~~vg~--~v~~~~~~~~~~y-~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~g~------~k~~~~~s~~~~~ 347 (477)
T TIGR01301 281 DTDWMGR--EVYGGSVNQGAKY-DDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGWGA------GKRLWGIVNIILA 347 (477)
T ss_pred ccHHHHH--HHcCCCCcchhHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcc------chhHHHHHHHHHH
Confidence 1111100 0000000000000 00000 0011122222222 222223333333221 2344478888899
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCcccccccc-hHHHHHHHHHHHHHHHHHhhhhhhhcccccCc--hhhHHHHHHHHH
Q 008934 388 ASMTAWAIVEAARRSIAINEGISDDLRAVVQMS-AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK--SMSSIASTLSGA 464 (548)
Q Consensus 388 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~--~~rg~~~g~~~~ 464 (548)
+|+....+.....++..++++- ++--...+. -+..+..+.+.|+..+..+...++++.+..|+ +..|.++|+.|.
T Consensus 348 ~~l~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~ 425 (477)
T TIGR01301 348 ICLAATVLVTYVAKNSRYYDGD--GESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNL 425 (477)
T ss_pred HHHHHHHHHHhhhhcccccccc--ccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHH
Confidence 8988887765211111011100 000001112 35677788999999999999999999999995 455999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008934 465 GLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 527 (548)
Q Consensus 465 ~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 527 (548)
+-.+...+.....|.+....+. +...++.+.++.++++.+..+..-++.
T Consensus 426 ~I~lpQii~sl~~g~~~~~~g~--------------~~~~~~~~~gv~~~~aa~~~~~~~~~~ 474 (477)
T TIGR01301 426 AIVIPQIIVSLGSGPWDQLFGG--------------GNLPAFVVGAVAAFVSGLLALILLPRP 474 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC--------------CCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999988886644431 124556777777777777666554443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.3e-17 Score=166.99 Aligned_cols=334 Identities=12% Similarity=0.040 Sum_probs=194.3
Q ss_pred HHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhcc----ccchHHH-HHHHHHHHHHHHHHHHhcccCCCCC
Q 008934 38 PNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY----VGRYRMI-GFGCFTCLLGMVLLWSTTILPGAKP 112 (548)
Q Consensus 38 ~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~----~Grk~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 112 (548)
......+.+++|+|.++.+++... .+...+ .++.|.++||+ +||||.+ ..+.++..+....+.+.. .
T Consensus 8 ~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---~--- 79 (356)
T TIGR00901 8 GNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---P--- 79 (356)
T ss_pred HhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC---c---
Confidence 333444466889999999999655 444444 89999999995 3899975 556666666655555432 1
Q ss_pred CCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008934 113 PACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 192 (548)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i 192 (548)
..+.+.+....++.+++.+...+...+++.|.+|++ +|+++.++...+.++|.++++.+
T Consensus 80 --------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~l 138 (356)
T TIGR00901 80 --------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDE-------ELGYGSTIYIVGYRAGMLLSGSL 138 (356)
T ss_pred --------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh-------hhchHHHHHHHHHHHHHHHHHHH
Confidence 125566666677788888888899999999999884 48999999999999999999999
Q ss_pred HHHhhhccC--------chhhhHHHHHHHHHHHHHHHhcCCceeccCCCCC-CchhHHHHHHHHHhhccCCCCCcchhhh
Q 008934 193 IVYIQDNLG--------WKVGFGVPAVIMLLSALSFFLASPFYVKSKANTS-LLPGLTQVLVASFKNRRTKLPTQATEEM 263 (548)
Q Consensus 193 ~~~l~~~~g--------~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (548)
++++.++.| ||.+|++.++..+++.+..+...++..+++++++ +..+....+....+++...
T Consensus 139 ~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 209 (356)
T TIGR00901 139 ALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMI--------- 209 (356)
T ss_pred HHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCch---------
Confidence 999988888 9999999888776655544433333211111111 1111111111111111100
Q ss_pred hhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCceecCcccchh
Q 008934 264 YHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIF 343 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~~~~~~~~ 343 (548)
.....+-..... ............ ....+ .| .+++....+
T Consensus 210 -------------~~~~~~~~~~~~------------------~~~~~~~~~~~~---~~l~~--~g----~~~~~~g~~ 249 (356)
T TIGR00901 210 -------------QALLLLLLIVLY------------------KLGDSAATVLTT---LFLLD--MG----FSKEEIALV 249 (356)
T ss_pred -------------HHHHHHHHHHHH------------------HHHHHHHHHHHH---HHHHH--cC----CCHHHHHHH
Confidence 000000000000 000001111111 11111 22 233332222
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHH
Q 008934 344 AILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMW 423 (548)
Q Consensus 344 ~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 423 (548)
......+...+ ......++.+| .++++.+..+.++.+++.....+.... . ...+ ....+.+.
T Consensus 250 ~~~~~~~~~~~----g~~~~g~l~~r---~g~~~~l~~~~~~~~~~~~~~~~~~~~-------~-~~~~---~~~~~~~~ 311 (356)
T TIGR00901 250 AKINGLLGAIL----GGLIGGIIMQP---LNILYALLLFGIVQALTNAGFVWLASN-------G-HHDG---ITFPHLLM 311 (356)
T ss_pred hHHHHHHHHHH----HHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHhc-------C-cccc---cccchHHH
Confidence 22111111111 22223334444 666667777887777776655443200 0 0000 00024566
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHH
Q 008934 424 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLS 467 (548)
Q Consensus 424 ~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 467 (548)
++...++.++++++.++...++..+.+|+++||+++|+.+...+
T Consensus 312 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 312 LFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 77778888999999999999999999999999999999877654
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.7e-16 Score=161.78 Aligned_cols=387 Identities=16% Similarity=0.090 Sum_probs=224.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Q 008934 20 PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99 (548)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~ 99 (548)
.++....++..+.+-...++++.|++ +.|+|..|.|.+.+...+...+.+++.|+++||+..+||++.++.++..+...
T Consensus 5 ~rLs~~~f~~f~~~G~~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~ 83 (400)
T PF03825_consen 5 FRLSLMYFLYFFAYGAFLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALL 83 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHH
Confidence 45556677777788888899999988 57899999999999999999999999999999974567888777766655554
Q ss_pred HHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHH
Q 008934 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY 179 (548)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 179 (548)
+....+ +.+.++....+..+......|...++..+...+.+.+ =-|.|..
T Consensus 84 ~~~~~~-----------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~---YG~iRlw---- 133 (400)
T PF03825_consen 84 LLAFSS-----------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKD---YGRIRLW---- 133 (400)
T ss_pred HHHHhc-----------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCC---CCcchhh----
Confidence 444433 4566666677778888888888888888777643211 0133333
Q ss_pred HHHHHHHHHHHHH-HHHhhhcc---CchhhhHHHHHHHHHHHHHHHhcCCcee-ccCCCCCCchhHHHHHHHHHhhccCC
Q 008934 180 VFVSASSIVAVTC-IVYIQDNL---GWKVGFGVPAVIMLLSALSFFLASPFYV-KSKANTSLLPGLTQVLVASFKNRRTK 254 (548)
Q Consensus 180 ~~~~ig~~~gp~i-~~~l~~~~---g~~~~f~i~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (548)
+++|.+++... ++++.... +....+++.+...++..... +..|+.+ +++.+++..+...+.....+|+++..
T Consensus 134 --GSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~-l~lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~ 210 (400)
T PF03825_consen 134 --GSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFA-LFLPKTPPKRSAKESVKKLLGLDALKLLKNPRFL 210 (400)
T ss_pred --hhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHH-HhCCCCccccccCCCcccccchHHHHHhcCccHH
Confidence 33444443222 22222222 22345555554333222222 2223222 11111111111111112223332211
Q ss_pred CCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHH-HHHHHHHHHhhccCCCCCCc
Q 008934 255 LPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQV-EELKALIKASSMDRHVTPNF 333 (548)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~ 333 (548)
. ++-... ..+. ......+-...++...|
T Consensus 211 ~-------------------------Fll~~~-----------------------l~~~~~~~~~~f~~~yl~~~gg--- 239 (400)
T PF03825_consen 211 V-------------------------FLLAAF-----------------------LIGISHAAYYTFFSIYLQELGG--- 239 (400)
T ss_pred H-------------------------HHHHHH-----------------------HHHHHHHHHHHHHHHHHHHccc---
Confidence 1 110000 0000 00000000111111100
Q ss_pred eecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCc
Q 008934 334 EIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDL 413 (548)
Q Consensus 334 ~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (548)
.+ .-+.........+.+..+.-..+|+.+| ++.++.+.++.++.++=+.+++....
T Consensus 240 -~~-----~~~~g~~~~l~~~aEi~~f~~~~~~~~r---~g~~~ll~~a~~~~~vR~~l~a~~~~--------------- 295 (400)
T PF03825_consen 240 -YS-----GSTIGILWALGVVAEIPFFFFSGRFLKR---FGIKWLLLLALVAYAVRWLLYAYFSD--------------- 295 (400)
T ss_pred -ch-----hhHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhcC---------------
Confidence 11 1111112223333444455556777777 88999999999999999999887630
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 008934 414 RAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAG-LSAANLVASLIMNAVDDITKRGGNGGW 492 (548)
Q Consensus 414 ~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~-~~~g~~lg~~~~~~i~~~~~~~~~~~~ 492 (548)
+.......+.....+.|+..++...+...++.+.+|++.|+++||+++.. .++|+.+|+.+.|.+.+..+.++
T Consensus 296 --~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~---- 369 (400)
T PF03825_consen 296 --PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG---- 369 (400)
T ss_pred --CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh----
Confidence 00001112233446799999999999999999999999999999998765 67999999999998765443111
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008934 493 IPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 527 (548)
Q Consensus 493 ~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 527 (548)
. -.+..++.+.+++.++..+++++..|++
T Consensus 370 ~------~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 370 M------FDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred h------hhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 0 0134456666777777777777665544
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-16 Score=167.04 Aligned_cols=359 Identities=13% Similarity=0.051 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccchHHH-HHHHHHHHHHH
Q 008934 23 IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY---VGRYRMI-GFGCFTCLLGM 98 (548)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~---~Grk~~~-~~~~~~~~~~~ 98 (548)
-+..+..++.+..+.++++.|+++.+|+++.++|.+..+..+...+..|+.|+++||. +||||.+ .++.+...+..
T Consensus 14 g~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~ 93 (448)
T PRK09848 14 SLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFS 93 (448)
T ss_pred ccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHH
Confidence 3456677788877888899999999999999999999999999999999999999993 3777755 44555444444
Q ss_pred HHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHH
Q 008934 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (548)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (548)
.++... |. ....+...+..++...+.+++.+...+...++..+..++.+ +|.+..++.
T Consensus 94 ~~~~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------~r~~~~~~r 151 (448)
T PRK09848 94 VLVFWV---PT-------------DWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ------SRARLGAAR 151 (448)
T ss_pred HHHHhC---cC-------------CCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH------HHHHHHHHH
Confidence 433211 11 00001123445556677888899988888888777776643 377776665
Q ss_pred HHH-----HHHHHHHHHHHHHHhhhccCchhhh--HHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhc
Q 008934 179 YVF-----VSASSIVAVTCIVYIQDNLGWKVGF--GVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNR 251 (548)
Q Consensus 179 ~~~-----~~ig~~~gp~i~~~l~~~~g~~~~f--~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (548)
.+. .+++..++|.+.+...+.....+.. .+.+++.++..++.....++...++.+ + +...+.....++++
T Consensus 152 ~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~-~--~~~~~~~~~l~~n~ 228 (448)
T PRK09848 152 GIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVA-Q--PSLKISLQTLKRNR 228 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCcc-C--CCHHHHHHHHhCCc
Confidence 543 3456666666655432211111111 112222222222222222222111111 1 12222222222332
Q ss_pred cCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCC
Q 008934 252 RTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTP 331 (548)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 331 (548)
.+... .....+..... ... ... ........++
T Consensus 229 ~f~~~--------------------~~~~~~~~~~~-----------------------~~~---~~~-~~~~~~~~~g- 260 (448)
T PRK09848 229 PLFML--------------------CIGALCVLIST-----------------------FAV---SAS-SLFYVRYVLN- 260 (448)
T ss_pred hHHHH--------------------HHHHHHHHHHH-----------------------HHH---hhh-heeeEeeecC-
Confidence 21100 00000000000 000 000 0000111111
Q ss_pred CceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 008934 332 NFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISD 411 (548)
Q Consensus 332 ~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 411 (548)
.++. ..........+...+..++.+++.+| .+.++.+.+|.++.+++.+.+.+..
T Consensus 261 ---~~~~-----~~~~~~~~~~~~~~~~~~l~~~l~~r---~g~~~~~~~g~~~~~i~~~~~~~~~-------------- 315 (448)
T PRK09848 261 ---DTGL-----FTVLVLVQNLVGTVASAPLVPGMVAR---IGKKNTFLIGALLGTCGYLLFFWVS-------------- 315 (448)
T ss_pred ---ChHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH---hCcHHHHHHHHHHHHHHHHHHHHcC--------------
Confidence 1110 01111111111122244555666655 6777788889888888876665421
Q ss_pred CcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCch-------hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008934 412 DLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS-------MSSIASTLSGAGLSAANLVASLIMNAVDDIT 484 (548)
Q Consensus 412 ~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~-------~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~ 484 (548)
..+.+.+.+..++.++|+++..+..+++..+.+|.+ .+|.++|++++.+.+|..+|+.+.+.+....
T Consensus 316 ------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 316 ------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred ------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 125666677788899999999999999998888765 4699999999999999999999999876655
Q ss_pred c
Q 008934 485 K 485 (548)
Q Consensus 485 ~ 485 (548)
+
T Consensus 390 G 390 (448)
T PRK09848 390 G 390 (448)
T ss_pred C
Confidence 4
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.6e-16 Score=155.37 Aligned_cols=395 Identities=12% Similarity=0.053 Sum_probs=262.6
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHH
Q 008934 11 NPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFG 90 (548)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~ 90 (548)
.++.+.|..+..... +.-.+........+..++++++|+|+.|.+++..+..+...+..++-|.+.||+ |.|++..++
T Consensus 8 ~k~~~~~~L~~S~~a-f~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s 85 (417)
T COG2223 8 GKRIARRNLWLSTLA-FDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILS 85 (417)
T ss_pred cccchhHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHH
Confidence 345556666654443 333444455666777788999999999999999999999999999999999996 999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchh
Q 008934 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGA 170 (548)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (548)
.++..+-.+...++...| +.+.+++...+.|++.+- .+...+++++.+|+++
T Consensus 86 ~~l~~IP~~~~~~a~~~~--------------------~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~------- 137 (417)
T COG2223 86 MLLLLIPCLGLAFAVTYP--------------------STWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEK------- 137 (417)
T ss_pred HHHHHHHHHHHHHHccCC--------------------chHHHHHHHHHHhcccce-ehcccccccccCChhh-------
Confidence 999888888888766222 347888888889988655 6788899999999955
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccC---chhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHH
Q 008934 171 LQSYFSWYYVFVSASSIVAVTCIVYIQDNLG---WKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVAS 247 (548)
Q Consensus 171 r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g---~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (548)
++.+++++. ..|+|..+...++.++....| |+.+..+..+..++..+..++..+..+.++++.++... .-+...
T Consensus 138 qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~--~~~~~v 214 (417)
T COG2223 138 QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP--AQLKAV 214 (417)
T ss_pred hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch--hHHHHH
Confidence 899999999 899999999999999998888 99988888887777666666554433222222111110 000000
Q ss_pred HhhccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccC
Q 008934 248 FKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDR 327 (548)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (548)
.++++ .|. .. +-+.. +.-..-.....+ +.....
T Consensus 215 ~~~~~----------~W~-----------ls---llY~~----------------------tFG~Fvgfs~~l-~~~~~~ 247 (417)
T COG2223 215 FSNKD----------TWL-----------LS---LLYFA----------------------TFGGFVGFSAYL-PMYLVT 247 (417)
T ss_pred hcCcc----------hHH-----------HH---HHHHH----------------------HHHHHHHHHHHH-HHHHHH
Confidence 00000 000 00 00000 000000000000 111112
Q ss_pred CCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008934 328 HVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINE 407 (548)
Q Consensus 328 ~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~ 407 (548)
+.+ .. ...........|+...+.-|+.+++.|| .+..+...+.++.++++......... .+
T Consensus 248 ~fg----~~-----~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR---~Gg~rv~~~~f~~~~~~~~~l~~~~~-------~~ 308 (417)
T COG2223 248 QFG----LS-----PVTAGLIAFLFPLIGALARPLGGWLSDR---IGGRRVTLAVFVGMALAAALLSLFLT-------GF 308 (417)
T ss_pred hcC----CC-----hhhHHHHHHHHHHHHHHHHhccchhhhh---ccchhHHHHHHHHHHHHHHHHHcccc-------cc
Confidence 211 21 2222244555666677788889999998 89999999988888888888776530 00
Q ss_pred CCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 008934 408 GISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRG 487 (548)
Q Consensus 408 ~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~ 487 (548)
....+.+..+..++...+..++-+-..+.++....|+ +.|.+.|+.....++|++.-|...+...+.+
T Consensus 309 --------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t--- 376 (417)
T COG2223 309 --------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT--- 376 (417)
T ss_pred --------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhc---
Confidence 0112444455555555555566555566666666655 5788999999999999888787777755433
Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008934 488 GNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 528 (548)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 528 (548)
+.+...|+++..+.+++.+..+..+.|.+
T Consensus 377 ------------g~~~~~f~~~~~~~~~a~v~~~~~y~r~~ 405 (417)
T COG2223 377 ------------GSYTGAFMLLLAFYLVALVLTWALYARRR 405 (417)
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34677899999999999888887776653
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.9e-16 Score=164.42 Aligned_cols=358 Identities=7% Similarity=0.031 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccchHHHH-HHHHHHHHHHH
Q 008934 24 ANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY---VGRYRMIG-FGCFTCLLGMV 99 (548)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~---~Grk~~~~-~~~~~~~~~~~ 99 (548)
+..+..++.+..+..+++.|+++.+|+|+.++|.+..+..+.-.+..|+.|+++||. +||||..+ .+.+...+...
T Consensus 16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~ 95 (444)
T PRK09669 16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL 95 (444)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence 344566666777788999999999999999999999999999999999999999992 38866555 55566666655
Q ss_pred HHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHH
Q 008934 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY 179 (548)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 179 (548)
++...+ .. ......+.+++...+.+++.........++.+|..++.+ +|.+..++..
T Consensus 96 l~f~~p---~~--------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~------eR~~l~~~r~ 152 (444)
T PRK09669 96 LTFYTP---DF--------------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR------ERHSLQSWRF 152 (444)
T ss_pred HHHhCC---CC--------------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH------HHHHHHHHHH
Confidence 544322 10 001234556666667777777777778899999886543 4888888888
Q ss_pred HHHHHHHHHHHHHHHHhhh-------ccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhcc
Q 008934 180 VFVSASSIVAVTCIVYIQD-------NLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRR 252 (548)
Q Consensus 180 ~~~~ig~~~gp~i~~~l~~-------~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (548)
...++|..+++.+...+.. ..||+..+.+.+++.++..++.+...++..+++ + ++..+..+.+...++++.
T Consensus 153 ~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~-~-~~~~~~~~~~~~~~~n~~ 230 (444)
T PRK09669 153 ALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPE-V-DNSSSVWKDLKLLLGNSQ 230 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCC-C-cCCCCHHHHHHHHhCCch
Confidence 8888888887765443332 236777777666655555444443333221111 1 111122222223333322
Q ss_pred CCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCC
Q 008934 253 TKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPN 332 (548)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 332 (548)
+... .....+.... ..... .. ........++
T Consensus 231 ~~~l--------------------~~~~~~~~~~------------------------~~~~~--~~-~~y~~~~~~~-- 261 (444)
T PRK09669 231 WRIM--------------------FIFNVVLLTA------------------------VVTRG--GA-TLYYVNYVLL-- 261 (444)
T ss_pred HHHH--------------------HHHHHHHHHH------------------------HHHHh--hh-hheeeeeecC--
Confidence 1110 0000000000 00000 00 0001111111
Q ss_pred ceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008934 333 FEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDD 412 (548)
Q Consensus 333 ~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 412 (548)
............. +...+..++..++.+| .+.++.+.+++++.+++...+....
T Consensus 262 ----~~~~~~~~~~~~~----i~~ii~~~~~~~l~~r---~gk~~~~~~~~~~~~~~~~~~~~~~--------------- 315 (444)
T PRK09669 262 ----RPDLATLFLVTGM----IAGLFGALLSERLLGK---FDRVRAFKWTIVAFVILSALIFFIP--------------- 315 (444)
T ss_pred ----CHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHHhC---------------
Confidence 1111110000001 1111122333344444 4444556666655554333322221
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccC-------chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008934 413 LRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVDDITK 485 (548)
Q Consensus 413 ~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~ 485 (548)
.-+.+.+.+..++.+++++...+..+++..+.+| +++.|...|++++...+|.++|+.+.+.+.+..+
T Consensus 316 -----~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 316 -----PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred -----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1145556667788999999999999999988876 3456788999999999999999999998876665
Q ss_pred C
Q 008934 486 R 486 (548)
Q Consensus 486 ~ 486 (548)
.
T Consensus 391 y 391 (444)
T PRK09669 391 Y 391 (444)
T ss_pred C
Confidence 4
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-15 Score=162.15 Aligned_cols=359 Identities=10% Similarity=0.064 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhh----ccccchHHHH-HHHHHHHHHH
Q 008934 24 ANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLAD----SYVGRYRMIG-FGCFTCLLGM 98 (548)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laD----r~~Grk~~~~-~~~~~~~~~~ 98 (548)
+..+..++.+..+.++++.|+++.+|+++..+|.+..+.-+.-.+..|+.|+++| |+ ||||.++ ++.....++.
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~ 91 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVL 91 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHH
Confidence 3455667777788899999999999999999999999999999999999999999 64 9965544 4666666665
Q ss_pred HHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHH
Q 008934 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (548)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (548)
.++...+..+ .+...+.+.+...+.+++.........++..|..++.+ +|.+.+++.
T Consensus 92 ~llf~~p~~~-----------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~------eR~~l~~~~ 148 (473)
T PRK10429 92 FLLFSAHLFE-----------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR------EREQLVPYP 148 (473)
T ss_pred HHHHcCCCCC-----------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH------HHHHHHHHH
Confidence 5554322000 01134455666667788888888899999999886543 489999987
Q ss_pred HHHHHHHHHHHHHHHHHhhhc-------cCchhhhHHHHHHHHHHHHHHHhcCCceeccC---CCCCCchhHHHHHHHHH
Q 008934 179 YVFVSASSIVAVTCIVYIQDN-------LGWKVGFGVPAVIMLLSALSFFLASPFYVKSK---ANTSLLPGLTQVLVASF 248 (548)
Q Consensus 179 ~~~~~ig~~~gp~i~~~l~~~-------~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 248 (548)
....++|+.+.+.+...+.+. .+|+....+.+++.++..+..+...++..+.+ +++++..+..+.+....
T Consensus 149 ~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (473)
T PRK10429 149 RFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIY 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHh
Confidence 777788766665554433221 24555555555554444444443333321110 11111111222222222
Q ss_pred hhccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCC
Q 008934 249 KNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRH 328 (548)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (548)
+|+.+... ....++... .......+........
T Consensus 229 ~n~~~~~l--------------------l~~~~~~~~---------------------------~~~~~~~~~~y~~~y~ 261 (473)
T PRK10429 229 KNDQLSCL--------------------LGMALAYNI---------------------------ASNIINGFAIYYFTYV 261 (473)
T ss_pred cCHHHHHH--------------------HHHHHHHHH---------------------------HHHHHhhheeeEEEEE
Confidence 22211100 000000000 0000000000011111
Q ss_pred CCCCceecCcc---cchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008934 329 VTPNFEIPSGS---FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAI 405 (548)
Q Consensus 329 lg~~~~i~~~~---~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~ 405 (548)
++ ..+. +..+..+..++ ..+++.++.+| ++.++.+.++.++..++.+.+.....
T Consensus 262 ~~-----~~~~~~~~~~~~~i~~ii--------~~~~~~~l~~r---~gkk~~~~~~~~~~~~~~~~~~~~~~------- 318 (473)
T PRK10429 262 IG-----DADLFPYYLSYAGAANLV--------TLILFPRLVKS---LSRRILWAGASIFPVLSCGVLLLMGL------- 318 (473)
T ss_pred CC-----CHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH---cCcHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 11 0111 11112222222 33344444444 56666677777766655555433210
Q ss_pred hcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccC-------chhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008934 406 NEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMN 478 (548)
Q Consensus 406 ~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~~g~~lg~~~~~ 478 (548)
. .+.+.+.+++..++.+++.+..++...++..+.+| ++..|.+.|.+.+..-+|..+|+.+.|
T Consensus 319 ----~------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g 388 (473)
T PRK10429 319 ----A------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIG 388 (473)
T ss_pred ----c------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01145566667788899999999988888888877 455677999999999999999999999
Q ss_pred HhhhhhcC
Q 008934 479 AVDDITKR 486 (548)
Q Consensus 479 ~i~~~~~~ 486 (548)
.+.+..+.
T Consensus 389 ~~l~~~Gy 396 (473)
T PRK10429 389 VVLGLIGY 396 (473)
T ss_pred HHHHHcCC
Confidence 87765543
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-15 Score=154.15 Aligned_cols=155 Identities=13% Similarity=0.064 Sum_probs=134.8
Q ss_pred hHHHHHHHHhHhhcCChhH-HHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 008934 36 FTPNMILYLCREYNMETTA-ATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPA 114 (548)
Q Consensus 36 ~~~~l~~yl~~~lg~s~~~-ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 114 (548)
..++...|+.+++|+++++ .|.+.++++.++.+..+++|+++||+ |.|+++.++.+.+.+..++..++.
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~--------- 113 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT--------- 113 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH---------
Confidence 3467788999999999999 99999999999999999999999995 999999999999999999999876
Q ss_pred cccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008934 115 CDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194 (548)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~ 194 (548)
+...+.+.|++.|++.|... +...++..++|+ ++|+++.++...+.++|.++++++++
T Consensus 114 --------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~-------kER~ratsi~~sg~~vG~~Ia~~L~q 171 (511)
T TIGR00806 114 --------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP-------SRYQRAAAYSRAAVLLGVFLSSVLGQ 171 (511)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999 999999999998 55999999999999999999999999
Q ss_pred HhhhccCchhhhH---HHHHHHHHHHHHHHhc
Q 008934 195 YIQDNLGWKVGFG---VPAVIMLLSALSFFLA 223 (548)
Q Consensus 195 ~l~~~~g~~~~f~---i~~~~~~i~~~~~~~~ 223 (548)
++ ..+||+.-+. +......+++++.++.
T Consensus 172 ll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 172 LL-VTLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HH-HhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 94 4578875443 4444455555554443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=157.38 Aligned_cols=149 Identities=19% Similarity=0.128 Sum_probs=136.4
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCC
Q 008934 46 REYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESA 125 (548)
Q Consensus 46 ~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (548)
..++-+.++.|++..++.+...+..|+.|.+.||+ |+|-.+++|++++...++++++..
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~-------------------- 157 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN-------------------- 157 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc--------------------
Confidence 45778889999999999999999999999999995 999999999999999999999876
Q ss_pred CccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhh
Q 008934 126 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVG 205 (548)
Q Consensus 126 ~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~ 205 (548)
+.+.++++|.++|+|.+....+..++++|.+|++++ |++++|..-.+..+|-.+||..+|.+.+..|++.+
T Consensus 158 ---sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e------r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aP 228 (464)
T KOG3764|consen 158 ---SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE------RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAP 228 (464)
T ss_pred ---hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh------hhHHHHHHHHHHhccceecCCcccchHhhcCCcCc
Confidence 678899999999999999999999999999999765 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcC
Q 008934 206 FGVPAVIMLLSALSFFLAS 224 (548)
Q Consensus 206 f~i~~~~~~i~~~~~~~~~ 224 (548)
|.+.+++.++-..+.++..
T Consensus 229 FlVL~~v~Lld~~L~l~vi 247 (464)
T KOG3764|consen 229 FLVLAIVLLLDGALQLLVI 247 (464)
T ss_pred HHHHHHHHHHHHHHHHhee
Confidence 9999988887665554443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.4e-15 Score=157.76 Aligned_cols=364 Identities=11% Similarity=0.020 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----chHHHHHHHHHH
Q 008934 20 PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVG-----RYRMIGFGCFTC 94 (548)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~G-----rk~~~~~~~~~~ 94 (548)
..+....+.+.+. +.+...++.++++++|+|+++.+...+...+...+-++ +|.++||+ + ||+.+.++.++.
T Consensus 29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l~ 105 (468)
T TIGR00788 29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLLG 105 (468)
T ss_pred HHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHHH
Confidence 3444477888888 88888899999999999999999999888888888655 99999996 7 777777776554
Q ss_pred HHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHH
Q 008934 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (548)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (548)
. ...+..++. .+ .......+.+++.+++.+....+.-++..|..+ +++ +.++..
T Consensus 106 ~-~~~~~~l~~-~~-------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~----~~~~~~ 159 (468)
T TIGR00788 106 S-AILYGLLPG-KV-------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP----SAGPSL 159 (468)
T ss_pred H-HHHHHhccc-cc-------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC----CcCCCe
Confidence 2 122222221 00 123344446788899999999999999999998 443 335667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceec-cCCCCCCc---------h------
Q 008934 175 FSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVK-SKANTSLL---------P------ 238 (548)
Q Consensus 175 ~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~---------~------ 238 (548)
.++.+...++|.++|+.++|.+.+.++|+..|++.+...++..+..... ++.++ ..++.++. .
T Consensus 160 ~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~-~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (468)
T TIGR00788 160 VSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLS-KERRAFVRPRIGTYLEMNMALLTLGVLANV 238 (468)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhc-ccccccccccccccchhhhhhhhhhHHHHH
Confidence 7777888899999999999999999999999999887766664333333 22210 11111000 0
Q ss_pred -hHHHHHHHHHhhccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHH
Q 008934 239 -GLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELK 317 (548)
Q Consensus 239 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (548)
+..+.++..++++.. + ....+.++.+. .. .+. ...+...
T Consensus 239 ~~~~~~l~~~l~~~~i----------~----------~~l~fifl~~~-~~---------~~~-~~~~f~~--------- 278 (468)
T TIGR00788 239 KVQILGLRGAIQLLEI----------A----------KPLIFIFLSYA-NL---------PGA-SGSVFCA--------- 278 (468)
T ss_pred HHHHHHHHHHHhcHHH----------H----------HHHHHHHHHHh-hc---------CCC-CceeEEE---------
Confidence 000001111111000 0 00000111000 00 000 0000000
Q ss_pred HHHHHhhccCCCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 008934 318 ALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVE 397 (548)
Q Consensus 318 ~~~~~~~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~ 397 (548)
....+| .++.....+..... +.+.....+.+|+.+| .+.++.+.++.++.+++........
T Consensus 279 -------~~~~lG----~s~~~~G~~~~~~~-----v~~i~g~~~~~~~~~~---~~~r~~l~~~~~l~~~~~~~~~~l~ 339 (468)
T TIGR00788 279 -------TTQCLP----GGPSFSGMSKVVGN-----LGSLCGVGGYDRFLKT---FPYRLLFGVTTLLYTLSSLFDLILV 339 (468)
T ss_pred -------EcccCC----CCcchhhhHHHHHH-----HHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHhCceeee
Confidence 000111 33333332222211 1112233334444444 6777778888888887775533221
Q ss_pred HHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008934 398 AARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIM 477 (548)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~ 477 (548)
.. ....-++ .+.+++....++.+++.++.+.+.+.++.+.+|++.+|+..|+.+...++|..+++.+.
T Consensus 340 ~~---~~~~~gi---------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~g 407 (468)
T TIGR00788 340 KR---WNLAFGI---------SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLG 407 (468)
T ss_pred ec---cccccCC---------CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000000 12345566678889999999999999999999999999999999999999999999988
Q ss_pred HHhhhhh
Q 008934 478 NAVDDIT 484 (548)
Q Consensus 478 ~~i~~~~ 484 (548)
+.+....
T Consensus 408 g~l~~~~ 414 (468)
T TIGR00788 408 VLLMETI 414 (468)
T ss_pred HHHHHHc
Confidence 8877544
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-14 Score=148.25 Aligned_cols=379 Identities=13% Similarity=-0.023 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHH--HHHHHHHHHHHHHHH-HHHhhccccchHHHHHHHHHHH
Q 008934 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNI--IFIWTAATNFLPIVG-ALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i--~~~~~~~~~~~~~~~-G~laDr~~Grk~~~~~~~~~~~ 95 (548)
...+....+.+.+.+..+.+.+|.|++ +.|.|+++.|.. .....+...+.+|+. ++.+||+ ||||..++++.+..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 344555778888888888899999986 569999999997 355577776677666 6689995 99999766654322
Q ss_pred H-HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHH
Q 008934 96 L-GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (548)
Q Consensus 96 ~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (548)
. ....+.... +. ......++....+.+...+...+...++..|..++ ++++.+
T Consensus 81 ~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~-------~~~~~~ 134 (390)
T TIGR02718 81 SACLASLALVG--PD-----------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNG-------RTLAKG 134 (390)
T ss_pred HHHHHHHHcCC--cc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hhhhHH
Confidence 2 222222111 10 00122233333444455555555555565555544 335667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccCC
Q 008934 175 FSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTK 254 (548)
Q Consensus 175 ~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (548)
.+....+..+|..+|+...+++.++.||+.+|++.++..++..+..+...++.+++++ ++..+ .+.+...+|++...
T Consensus 135 ~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~l~~~~~~ 211 (390)
T TIGR02718 135 NAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPE--APLAR-RASLFRFFRRPLAW 211 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccc--cchhh-HHHHHHHHcCcCHH
Confidence 7777777789999999888899999999999999888766655554443332211111 01000 01111112211100
Q ss_pred CCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCce
Q 008934 255 LPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFE 334 (548)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 334 (548)
..+.... +.................|. |
T Consensus 212 -------------------------~~~~~~~---------------------l~~~~~~~~~~~~~~~l~~~--G---- 239 (390)
T TIGR02718 212 -------------------------SLLALAL---------------------LSAMTAVSGFGLSKLYLVDA--G---- 239 (390)
T ss_pred -------------------------HHHHHHH---------------------HHHHHHHHHHHHhhHHHHhc--C----
Confidence 0000000 00000000111111111122 2
Q ss_pred ecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcc
Q 008934 335 IPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLR 414 (548)
Q Consensus 335 i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (548)
.+++...............+ .....+++.+| .+.++.+..+.++.++.......... .
T Consensus 240 ~s~~~ig~~~~~~~~~~~~~----g~~~~g~l~~r---~g~~~~l~~~~~~~~~~~~~~~~~~~--------~------- 297 (390)
T TIGR02718 240 WPLEWIGRLGMAGGAVTVLL----GCGGGAWLVRR---AGLWRTFILGVGLAGSLALLWFAQAA--------F------- 297 (390)
T ss_pred CCHHHHHHHHhHHHHHHHHH----HHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHH--------c-------
Confidence 33333333322221111111 12233444444 55556666666655333322221110 0
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 008934 415 AVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK-SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWI 493 (548)
Q Consensus 415 ~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~ 493 (548)
....+.+.+....++.+++.+...+..+....+..++ +.+|+.+++.+...++|..+|+.+.|.+.+..+
T Consensus 298 -~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-------- 368 (390)
T TIGR02718 298 -WLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-------- 368 (390)
T ss_pred -ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------
Confidence 0001222333334455666777777777777777766 889999999999999999999999998775332
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHH
Q 008934 494 PSNINKGHYDYYYWLLTALSMANFLY 519 (548)
Q Consensus 494 ~~~~~~~~~~~~f~~~~~~~~v~~~~ 519 (548)
+...|+..+++.+++++.
T Consensus 369 --------~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 369 --------YAGGFLSGTVLAVLAILL 386 (390)
T ss_pred --------cHHHHHHHHHHHHHHHHH
Confidence 456677766666665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-14 Score=151.95 Aligned_cols=395 Identities=12% Similarity=0.052 Sum_probs=223.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHH
Q 008934 56 TNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYF 135 (548)
Q Consensus 56 g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 135 (548)
..+++++.++.++++.++|+++||+ |||+.+.++.++..++..+..++...+ ....+++
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~--------------------~~e~li~ 121 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAP--------------------SFEMLIL 121 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhh--------------------hHHHHHH
Confidence 3457889999999999999999996 999999999998888887777665211 5788999
Q ss_pred HHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH--HhhhccCchhhhHHHHHHH
Q 008934 136 AFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV--YIQDNLGWKVGFGVPAVIM 213 (548)
Q Consensus 136 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~--~l~~~~g~~~~f~i~~~~~ 213 (548)
+|++.|+..|......+.++.|..|++- ||........+..+|..++..++. .+.+...|++.+....+..
T Consensus 122 GR~i~Gl~~gl~~~~~pmyl~E~sP~~~-------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~ 194 (485)
T KOG0569|consen 122 GRLIVGLACGLSTGLVPMYLTEISPKNL-------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPA 194 (485)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhcChhhh-------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHH
Confidence 9999999999999999999999999954 899888888888999888865542 2334556998888887766
Q ss_pred HHHHHHHHhcC--CceeccCCCCCCchhHHHHHHHHHhhccCCCCCcchh-hhhhcCCCCcccCCcchhhhHHhhhhhcC
Q 008934 214 LLSALSFFLAS--PFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATE-EMYHHGKGSMRLMPSENLRFLNKACMAKH 290 (548)
Q Consensus 214 ~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (548)
++.++...+.+ |++.-.+ ++...+..+.+ .-++.+.-.-.+ .++ ....+++... ......+.+.-. .
T Consensus 195 ~~~l~~l~~~PESPk~Ll~~--k~~~~~A~~sl-~~y~G~~~~~~~-~e~~~~e~~~~~~~---~~~~~sl~~~~~---~ 264 (485)
T KOG0569|consen 195 LLQLALLPFLPESPKYLLIK--KGDEEEARKAL-KFYRGKEDVEAE-IEEMLREIEEEELE---KKKQISLRQLLK---N 264 (485)
T ss_pred HHHHHHHhcCCCCcchHHHH--cCCHHHHHHHH-HHHhCCCcchhH-HHHHHHHHHHhccc---cccCCcHHHHhc---C
Confidence 65555444332 2221110 11111111111 111111000000 000 0000000000 000000000000 0
Q ss_pred CCCCCCCCCCCCCCCccchHHHHHHHHHHHH-HhhccCCCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCC
Q 008934 291 PEQDLTPDGRASNPNSLCTVEQVEELKALIK-ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGK 369 (548)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~ 369 (548)
+.. ++.. .+...+-..+|......+.. ...+-...| ++.+.....|....++-.+ ...+...+.+|
T Consensus 265 ~~l---R~~~-~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG----~~~~~a~~an~~~g~v~~~-~t~~~~~lid~---- 331 (485)
T KOG0569|consen 265 PTL---RRPL-LIGIVVSFAQQFSGINAIFFYSTSIFKTAG----FTPEEAQYANLGIGIVNLL-STLVSPFLIDR---- 331 (485)
T ss_pred cch---hHHH-HHHHHHHHHHHhcCcceeHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHh----
Confidence 000 0000 00000000111111111100 111111111 3333223333332222221 11112223444
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHH-hhhhhhhccc
Q 008934 370 PCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFN-MIGQTEFYYT 448 (548)
Q Consensus 370 ~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~-~~~~~~~~~~ 448 (548)
.+++..+.++..++.++.+++.......+... +.-.+..+.+.+++.+..++. .|..+-+..+
T Consensus 332 ---~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aE 395 (485)
T KOG0569|consen 332 ---LGRRPLLLISLSLMAVALLLMSIALFLSNSFG-------------SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAE 395 (485)
T ss_pred ---cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHH
Confidence 44557788888888888777766542211110 001112344555555555444 6666778888
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008934 449 ELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 528 (548)
Q Consensus 449 ~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 528 (548)
..|++.|+.++++....+++++++-......+.+..+ ++.|..+.+..++..+..+...++++
T Consensus 396 Lf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-----------------~~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 396 LFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-----------------PYVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred hCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------chhhHHHHHHHHHHHHHHHHhCcccC
Confidence 9999999999999999999999998888888775543 35677788888888887777888888
Q ss_pred ccCCCc
Q 008934 529 PFKGRV 534 (548)
Q Consensus 529 ~~~~~~ 534 (548)
+|+.++
T Consensus 459 gr~~~e 464 (485)
T KOG0569|consen 459 GRTPYE 464 (485)
T ss_pred CCCHHH
Confidence 776654
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.6e-15 Score=157.12 Aligned_cols=358 Identities=15% Similarity=0.120 Sum_probs=226.1
Q ss_pred HHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhh----ccccchHHHHH-HHHHHHHHHHHH
Q 008934 27 AFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLAD----SYVGRYRMIGF-GCFTCLLGMVLL 101 (548)
Q Consensus 27 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laD----r~~Grk~~~~~-~~~~~~~~~~l~ 101 (548)
+...+.+.....++..|+++.+|+++..+|.+..+..+...+..|+.|+++| |+ ||||.+++ |....+++..++
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence 4455566666678999999999999999999999999999999999999999 75 98877664 666777777776
Q ss_pred HHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHH
Q 008934 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181 (548)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 181 (548)
.... |. +.........+.+..++..++......+..++..|..+++++ |.+..++....
T Consensus 90 f~~~--p~-------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~------R~~l~~~~~~~ 148 (428)
T PF13347_consen 90 FSPP--PA-------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE------RTRLSSWRMIF 148 (428)
T ss_pred hccc--cc-------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh------hhhHHHHHHHH
Confidence 6431 11 000011344556777777999999999999999999987543 89999998888
Q ss_pred HHHHHHHHHHHHHHhhhcc-------CchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccCC
Q 008934 182 VSASSIVAVTCIVYIQDNL-------GWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTK 254 (548)
Q Consensus 182 ~~ig~~~gp~i~~~l~~~~-------g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (548)
..+|..+...+.+.+.+.. +|++...+.+++.++..++.....|+..++++++++..+..+.+...+++|.+.
T Consensus 149 ~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr~~~ 228 (428)
T PF13347_consen 149 SMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNRPFR 228 (428)
T ss_pred HHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccchhhhcccchHH
Confidence 8888876665655554322 577777777776666666555554441111112122112222222222222111
Q ss_pred CCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCce
Q 008934 255 LPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFE 334 (548)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 334 (548)
.. .....+... .+.. ..... .......++.. +
T Consensus 229 ~l--------------------~~~~~~~~~------------------~~~~-----~~~~~----~y~~~~vl~~~-~ 260 (428)
T PF13347_consen 229 IL--------------------LLAFFLQWL------------------AFAL-----MNTFL----PYYFTYVLGNE-G 260 (428)
T ss_pred HH--------------------HHHHHHHHh------------------hhhh-----hhhHH----HHHHHHHhcCc-h
Confidence 00 000000000 0000 00000 00111111100 0
Q ss_pred ecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcc
Q 008934 335 IPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLR 414 (548)
Q Consensus 335 i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (548)
. .+.+.....+..++ ..|++.++.+| .+.++.+..+.++.+++.+.+.+..
T Consensus 261 ~-~~~~~~~~~~~~~v--------~~~~~~~l~~r---~gk~~~~~~~~~~~~~~~~~~~~~~----------------- 311 (428)
T PF13347_consen 261 L-ISIFMLIFFVASIV--------GSPLWGRLSKR---FGKKKVYIIGLLLAALGFLLLFFLG----------------- 311 (428)
T ss_pred h-hHHHHHHHHHHHHH--------HHHHHHHHHHH---ccceeehhhhHHHHHHHHHHHHHHH-----------------
Confidence 0 01111122222222 44445555555 5666778889999888888877664
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 008934 415 AVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK-------SMSSIASTLSGAGLSAANLVASLIMNAVDDITKR 486 (548)
Q Consensus 415 ~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~-------~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~ 486 (548)
..+.+++.+..++.|++.+..++....+..+..+. +..|...|++++...++..+++.+.+.+....+.
T Consensus 312 ---~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 312 ---PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred ---hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 12678889999999999999999999999888874 4579999999999999999999999987765543
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-15 Score=147.65 Aligned_cols=335 Identities=14% Similarity=0.050 Sum_probs=198.4
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCcc
Q 008934 49 NMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWS 128 (548)
Q Consensus 49 g~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (548)
+-+..-+|.+-+.|.+...+.++.+|.++||+ |||.++.+|.+..++...+.+.+.
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~----------------------- 119 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR----------------------- 119 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 34557789999999999999999999999997 999999999998888888888766
Q ss_pred chHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccCchhh
Q 008934 129 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD---NLGWKVG 205 (548)
Q Consensus 129 ~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~---~~g~~~~ 205 (548)
++..+..+|++.|+..|- .....++++|.+++++ |+.+++.......+|.++||+++|++.+ ..| .++
T Consensus 120 ~F~afv~aR~l~Gi~kgn-l~v~rAiisdV~sek~-------r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p 190 (451)
T KOG2615|consen 120 NFAAFVLARFLGGIFKGN-LSVIRAIISDVVSEKY-------RPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYP 190 (451)
T ss_pred HHHHHHHHHHhhhhccCc-hHHHHHHHHhhcChhh-------ccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCc
Confidence 676777889999999887 4778899999999954 8999999999999999999999999987 333 233
Q ss_pred hHHHHH-HHHHHH---HHHHhcCCce-eccCCC--CCCchhHHHHHHHHHhhccCCCCCcchhhhhhcCCCCcccCCcch
Q 008934 206 FGVPAV-IMLLSA---LSFFLASPFY-VKSKAN--TSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSEN 278 (548)
Q Consensus 206 f~i~~~-~~~i~~---~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (548)
|..+.. ..+++. ..+..+.|+. +.++.. .++..+....-....+- + +.+....
T Consensus 191 ~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~~~~~~~~~~--------~--~~~~v~~---------- 250 (451)
T KOG2615|consen 191 FALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAADDRLALLKF--------A--RIFKVAA---------- 250 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccccchhhhhhhhhhhcch--------h--hhhhhhh----------
Confidence 333222 222222 2223333332 211111 11111111100000000 0 0000000
Q ss_pred hhhHHhhhhhcCCCCCCCCCCCCCCCCccchHH--HHHHHHHHHHHhhccCCC-CCCceecCcccchhhHHHHHHHHHHH
Q 008934 279 LRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE--QVEELKALIKASSMDRHV-TPNFEIPSGSFNIFAILTLTIWIGLY 355 (548)
Q Consensus 279 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l-g~~~~i~~~~~~~~~~~~ii~~~~l~ 355 (548)
+..- +.......|..+..+ ...++... ....+..+ -++|+..+.....+...+.+...++
T Consensus 251 --------lrn~------p~~~~i~~~~i~~l~~~ly~~l~s~--~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~- 313 (451)
T KOG2615|consen 251 --------LRNP------PLLDFISVLRIFGLHYFLYLELFSG--LENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVI- 313 (451)
T ss_pred --------hcCc------cccchHHHHHHHHHHHHHHHHHHHH--HHhhHHHhhcCccCCChhhheeeeehhhHHHHHH-
Confidence 0000 000000000000000 00001111 00111111 0145566655555555444444443
Q ss_pred HHHHHhhhhhhcCCCCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHH
Q 008934 356 DRAVLPLASKIKGKPCQLS-LKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLA 434 (548)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~-~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g 434 (548)
+...+|..++. ++ .+.....++.++.=.++..+... ....+..+..+.++.
T Consensus 314 ql~~~~~l~~~------~~~~~a~l~~~l~~~vP~~llls~~~----------------------~~~~l~~~s~l~sf~ 365 (451)
T KOG2615|consen 314 QLALVPILPRY------KGNIKAVLLFSLLLIVPAFLLLSLAR----------------------TPVVLYLGSTLKSFS 365 (451)
T ss_pred HHhcccccccc------ccchhhHHHHHHHHHHHHHHHHhccc----------------------cchhhhHHHHHHHHH
Confidence 22234433332 11 22222333333322223322221 334566788889999
Q ss_pred HHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008934 435 MAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 481 (548)
Q Consensus 435 ~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~ 481 (548)
.+...+..+.++....|.++||+.+|+.....+++.++||++.|.+.
T Consensus 366 ~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 366 TASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred HHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 99999999999999999999999999999999999999999998865
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-13 Score=147.59 Aligned_cols=149 Identities=11% Similarity=0.109 Sum_probs=117.5
Q ss_pred HHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccc
Q 008934 39 NMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQL 118 (548)
Q Consensus 39 ~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 118 (548)
....++.+++|-++ +..|+.+.+.+...+..++.|+|+|.+ |||..++.+.++.++|++..+.++
T Consensus 65 ~~l~~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~------------- 129 (599)
T PF06609_consen 65 SILPYINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ------------- 129 (599)
T ss_pred HHHHHHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC-------------
Confidence 34468889999874 467888999999999999999999996 999999999999999999999776
Q ss_pred cCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008934 119 RNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD 198 (548)
Q Consensus 119 ~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~ 198 (548)
+...++.+..+.|+|.|... .....++|..|.+ .|..+..+.....-+....+|.++..+..
T Consensus 130 ----------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k-------~R~~~~~~~~~~~i~~~~~~~~ia~~~~~ 191 (599)
T PF06609_consen 130 ----------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNK-------WRGLGLAIASIPFIITTWISPLIAQLFAA 191 (599)
T ss_pred ----------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccc-------hhhhHhHHHHHHHHhhhcccHHHHHHhcc
Confidence 67779999999999987765 4556689999873 36666665554444445566777766666
Q ss_pred ccCchhhhHHHHHHHHHHHHHH
Q 008934 199 NLGWKVGFGVPAVIMLLSALSF 220 (548)
Q Consensus 199 ~~g~~~~f~i~~~~~~i~~~~~ 220 (548)
+.+|||.|++..+...++++..
T Consensus 192 ~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 192 HSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred CCCcchHHHHHHHHHHHHHHHH
Confidence 6799999999888666655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-13 Score=148.66 Aligned_cols=180 Identities=16% Similarity=0.229 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhc---cccchHHHHH-HHHHHHHHHH
Q 008934 24 ANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADS---YVGRYRMIGF-GCFTCLLGMV 99 (548)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr---~~Grk~~~~~-~~~~~~~~~~ 99 (548)
...+..++.+..+..++..|+++.+|+++..+|.+..+.-+.-.+.-|+.|+++|| ++||||..++ +.+.+.++.+
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ 95 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV 95 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence 35556677777778899999999999999999999999999999999999999997 2599887765 4456666666
Q ss_pred HHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHH
Q 008934 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY 179 (548)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 179 (548)
++...+ .. ..+.....+.+...+..+++........++.++..++.+ +|.+..++..
T Consensus 96 llf~~p---~~--------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~------eRt~l~s~r~ 152 (460)
T PRK11462 96 LAYSTP---DL--------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT------QRISLQSWRF 152 (460)
T ss_pred HHHhCC---CC--------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH------HHHHHHHHHH
Confidence 665322 10 001124556666777788898888889999999988754 4999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcc-------CchhhhHHHHHHHHHHHHHHHhcCCc
Q 008934 180 VFVSASSIVAVTCIVYIQDNL-------GWKVGFGVPAVIMLLSALSFFLASPF 226 (548)
Q Consensus 180 ~~~~ig~~~gp~i~~~l~~~~-------g~~~~f~i~~~~~~i~~~~~~~~~~~ 226 (548)
.+.++|..+++.+...+.+.. ||+....+.+++.++...+.+...++
T Consensus 153 ~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE 206 (460)
T PRK11462 153 VLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKE 206 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhccee
Confidence 999999888877655444332 46665555555554444444443333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.7e-15 Score=162.34 Aligned_cols=199 Identities=15% Similarity=0.242 Sum_probs=151.2
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
+|.+.+.+....+......+.......-++++++++.++.|++.+.+.++..++.++.|+++||+ ||||.+.++.+++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~ 109 (633)
T TIGR00805 31 IKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMG 109 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHH
Confidence 55555555555555556667777777888999999999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHHhcccCCCCC----------------CCcccc-cC---------CCcCCC--ccchHHHHHHHHHHHHhcccc
Q 008934 96 LGMVLLWSTTILPGAKP----------------PACDQL-RN---------GCESAT--WSQLMPLYFAFGLMSLGSGGI 147 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~----------------~~~~~~-~~---------~~~~~~--~~~~~~~~i~~~l~g~g~g~~ 147 (548)
++.++.++.+++..-+. ..|... .+ .|.... ...+..++++|+++|+|.+..
T Consensus 110 lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~ 189 (633)
T TIGR00805 110 LGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI 189 (633)
T ss_pred HHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc
Confidence 99999886543211000 011100 00 011111 113567788999999999999
Q ss_pred ccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----------------------Cchhh
Q 008934 148 RSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL----------------------GWKVG 205 (548)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~----------------------g~~~~ 205 (548)
.+...+++.|.+|+++ |+.++++++....+|.++|+.+++++.+.+ +|+..
T Consensus 190 ~~~~~~~i~d~~~~~~-------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~ 262 (633)
T TIGR00805 190 FPLGISYIDDFAKSKN-------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIG 262 (633)
T ss_pred hhcCchhhhccCCccc-------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHH
Confidence 9999999999999854 899999999999999999999999987643 27778
Q ss_pred hHHHHHHHHHHHHHHHh
Q 008934 206 FGVPAVIMLLSALSFFL 222 (548)
Q Consensus 206 f~i~~~~~~i~~~~~~~ 222 (548)
|++.+++.++..+.++.
T Consensus 263 Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 263 FLICGGVALLTSIPFFF 279 (633)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88887766665544443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-12 Score=132.36 Aligned_cols=146 Identities=13% Similarity=0.101 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHh
Q 008934 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWST 104 (548)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~ 104 (548)
..|+..--....+-.+.+.+++.++++..|++.+...+..++.+++++.|++.+|+ |+|+.+.+|+.++++|..++.=+
T Consensus 20 ~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pA 98 (422)
T COG0738 20 SLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPA 98 (422)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333445566777788999999999999999999999999999999999996 99999999999999998888633
Q ss_pred cccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHH
Q 008934 105 TILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSA 184 (548)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 184 (548)
+ +...+..++.+.++.+.|.+...++.+++++...|+++ -.+-++..+....+
T Consensus 99 a--------------------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~-------a~~rlnl~q~fn~l 151 (422)
T COG0738 99 A--------------------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES-------AAFRLNLAQAFNGL 151 (422)
T ss_pred h--------------------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh-------HHHHHHHHHHhhhh
Confidence 3 12367889999999999999999999999999999854 45667788888999
Q ss_pred HHHHHHHHHHHhhh
Q 008934 185 SSIVAVTCIVYIQD 198 (548)
Q Consensus 185 g~~~gp~i~~~l~~ 198 (548)
|+++||.+++++..
T Consensus 152 Ga~~gp~~g~~lil 165 (422)
T COG0738 152 GAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998876
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.7e-13 Score=144.03 Aligned_cols=153 Identities=18% Similarity=0.266 Sum_probs=126.4
Q ss_pred hhHHHHHHHHhHh-----hcCCh--hHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhccc
Q 008934 35 GFTPNMILYLCRE-----YNMET--TAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTIL 107 (548)
Q Consensus 35 ~~~~~l~~yl~~~-----lg~s~--~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~ 107 (548)
+....+..++++. ...+. .+.+++.++..++..++.+++|+++|++ |||++++++.+++.+|.++...+.
T Consensus 64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~-- 140 (513)
T KOG0254|consen 64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP-- 140 (513)
T ss_pred ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh--
Confidence 5555566665552 22222 3458999999999999999999999996 999999999999999999999987
Q ss_pred CCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHH
Q 008934 108 PGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 187 (548)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 187 (548)
+...++++|++.|+|.|+.....+.+++|..|++ .|+...+.++...++|..
T Consensus 141 ---------------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~-------~RG~l~~~~~l~~~~Gi~ 192 (513)
T KOG0254|consen 141 ---------------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH-------IRGTLVSLYQLFITIGIL 192 (513)
T ss_pred ---------------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCChh-------hhHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999984 499999999999999999
Q ss_pred HHHHHHHHhhhc--cCchhhhHHHHHHHHHHHHH
Q 008934 188 VAVTCIVYIQDN--LGWKVGFGVPAVIMLLSALS 219 (548)
Q Consensus 188 ~gp~i~~~l~~~--~g~~~~f~i~~~~~~i~~~~ 219 (548)
++.. .+...++ ++||..+.+..+..++..+.
T Consensus 193 ~~~~-~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 193 LGYC-INYGTSKVYAGWRIPLGLALIPAVILALG 225 (513)
T ss_pred HHHH-HhhhhccCCccHHHHHHHHHHHHHHHHHH
Confidence 9854 4444443 48998888877766655555
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.4e-14 Score=149.78 Aligned_cols=413 Identities=15% Similarity=0.098 Sum_probs=254.4
Q ss_pred HHHHHHHHHHHHHHHhhHHH---HHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 20 PFIIANEAFERMATVGFTPN---MILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~---l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.+.+..++-++..+++..- +-..++++++-+..+++|+.++......+..|+.+.+.||+ |.|.+.+.|.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence 55555666666666666543 34556889999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHH-HHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFG-LMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
|.++.++++ +.+.+++... +.|+|.|+.+.....++...|++ +|+.+.
T Consensus 124 g~~lssF~~-----------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k--------kR~lA~ 172 (509)
T KOG2504|consen 124 GLLLSSFAT-----------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK--------KRALAT 172 (509)
T ss_pred HHHHHHHHh-----------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH--------HHHHHH
Confidence 999999987 6777777654 56899999999999999988874 489999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCC-CCCchhHHHHHHHHHhhccCC
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKAN-TSLLPGLTQVLVASFKNRRTK 254 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 254 (548)
++...+..+|..+-|.+..++.+.+|||..+++.+.+.+-........+|.....++. .+.........-..-+..+..
T Consensus 173 Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (509)
T KOG2504|consen 173 GIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELR 252 (509)
T ss_pred hhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccc
Confidence 9988888999999999999999999999999998877765555555544421111110 000000000000000000000
Q ss_pred CCCc---c------hhhhhhc-CCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchH---HHHHHHH-HHH
Q 008934 255 LPTQ---A------TEEMYHH-GKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTV---EQVEELK-ALI 320 (548)
Q Consensus 255 ~~~~---~------~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~ 320 (548)
...+ . .+...+. +...+.......+..+|..... + ..++.++.. ..+.... .++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~---------~---~~fl~~~~~~~~~~~g~~~p~~~ 320 (509)
T KOG2504|consen 253 ISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLK---------D---PKFLLLALSNLFAYLGFNVPFVY 320 (509)
T ss_pred cccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHc---------C---chHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 0000000 0000000000000001111100 0 011100000 0000000 000
Q ss_pred HHhhccCCCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008934 321 KASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAAR 400 (548)
Q Consensus 321 ~~~~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~ 400 (548)
-....+ ..+ ++........+ .+...+.+.-+..+.+.+++. .+......++++..+++.++..+..
T Consensus 321 l~~~~~-~~g----~~~~~aa~l~S-----iigi~~i~gRi~~G~laD~~~-~~~~~~~~~~ll~~gl~~~~~p~~~--- 386 (509)
T KOG2504|consen 321 LPSYAK-SLG----LSSNDAAFLLS-----IIGVSDIIGRIILGLLADKPG-IRALVLFLLTLLIAGLARLFLPFAT--- 386 (509)
T ss_pred HHHHHh-hcC----CChhhhHHHHH-----HHHHhhhhhhhhhhhhcCccc-cchHHHHHHHHHHHHHHHHHHHHhc---
Confidence 011111 111 22211111111 111122222333444445531 2344556778888888887777665
Q ss_pred HHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008934 401 RSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 480 (548)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i 480 (548)
+++.++..-+++|+..+...........+..+.+.-..+.|+..+..+++..+||-+.+.+
T Consensus 387 -------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~ 447 (509)
T KOG2504|consen 387 -------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLL 447 (509)
T ss_pred -------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceee
Confidence 7788888889999999999888888899999999999999999999999999999998865
Q ss_pred hhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 008934 481 DDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACC 524 (548)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~ 524 (548)
.+.+ ++|...|...++..+++..++.+..
T Consensus 448 ~d~t---------------g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 448 YDIT---------------GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eecc---------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence 5433 3477888898888888887766665
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-13 Score=139.39 Aligned_cols=387 Identities=10% Similarity=0.018 Sum_probs=216.3
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
+..+......+...+++-...++.+.+|+++.|+|.+++|.+.++..+...+.+|+.|.++||. |.||-++..+.+..+
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 5677777777788888888999999999999999999999999999999999999999999995 977765544433222
Q ss_pred --HHHHHH-HhcccCCCCCCCcccccCCCcCCCccch-HHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhH
Q 008934 97 --GMVLLW-STTILPGAKPPACDQLRNGCESATWSQL-MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (548)
Q Consensus 97 --~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (548)
+-.... ..+ +.+ .|. ...+++-...++......|..-+++.+.-- +.+
T Consensus 86 l~~pff~~v~~p-ll~------------------~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr---------~~~ 137 (412)
T PF01306_consen 86 LFGPFFIYVFGP-LLQ------------------SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSR---------RNG 137 (412)
T ss_dssp TCHHHHHHTHHH-HHH------------------TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHH---------HHS
T ss_pred HHHHHHHHHHHH-HHH------------------HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH---------Hhc
Confidence 222221 111 000 011 111222122233333333333333222111 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCC----CCchh-HHHHHHHH
Q 008934 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANT----SLLPG-LTQVLVAS 247 (548)
Q Consensus 173 ~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~ 247 (548)
.=+|-....+++|.+++..++|.+.+ .+-+..|++.....++..++.+..++...++.+.. .+.++ ..+.+...
T Consensus 138 feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 216 (412)
T PF01306_consen 138 FEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSL 216 (412)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHH
T ss_pred CCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHH
Confidence 22333344578999999999999987 45677888776655555544444433222111110 01011 01111122
Q ss_pred HhhccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccC
Q 008934 248 FKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDR 327 (548)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (548)
+|.++ .|.....+.... ......+||..+-... ..+
T Consensus 217 ~k~~~---------------------------fw~~~l~v~g~~------------~~Y~vfdqqf~~y~~~----~f~- 252 (412)
T PF01306_consen 217 FKMRN---------------------------FWFFVLFVIGVA------------AIYDVFDQQFPIYFAS----FFQ- 252 (412)
T ss_dssp TTSHH---------------------------HHHHHHHHHHHH------------HHHHHHHHHHHHHHHH----TSS-
T ss_pred hcchh---------------------------HHHHHHHHHHHH------------HHHHHHHHHHHHHHHH----Hhc-
Confidence 22111 011000000000 0000002222211110 000
Q ss_pred CCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008934 328 HVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINE 407 (548)
Q Consensus 328 ~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~ 407 (548)
+-+.....+...+++.+++ +..+....+++.+| .+++..+.++.+++++-....++.+
T Consensus 253 ----~~~~g~~~~G~l~s~~v~~-----E~~~m~~~p~li~r---ig~k~~Lllag~i~~iRi~~~~~~~---------- 310 (412)
T PF01306_consen 253 ----SAGQGNQMYGYLWSVQVFL-----EALMMFFSPWLINR---IGAKNLLLLAGVIMAIRIIGSGFAT---------- 310 (412)
T ss_dssp ----SHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHT------------
T ss_pred ----ccccChhHHhHHHHHHHHH-----HHHHHHHHHHHHHh---cChHhHHHHHHHHHHHHHHHHhhhc----------
Confidence 0111222333444433333 22233333444444 6778888888889999988888776
Q ss_pred CCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcC
Q 008934 408 GISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS-GAGLSAANLVASLIMNAVDDITKR 486 (548)
Q Consensus 408 ~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~~g~~lg~~~~~~i~~~~~~ 486 (548)
+.+++++.-.+.++-..+......-++.+..|++..++...+. ++..++|..+.+.+.|.+.+..+
T Consensus 311 ------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G- 377 (412)
T PF01306_consen 311 ------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG- 377 (412)
T ss_dssp ------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-
T ss_pred ------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-
Confidence 7888999999999999999999999999999999999988885 78899999999999988664332
Q ss_pred CCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008934 487 GGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 527 (548)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 527 (548)
++..|++++.+.++..++..+.-++.
T Consensus 378 ---------------~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 378 ---------------FQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred ---------------cHHHHHHHHHHHHHHHHHheeeecCC
Confidence 45578888877776666555544433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-12 Score=133.67 Aligned_cols=361 Identities=16% Similarity=0.104 Sum_probs=233.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccchHHHHH-HHHHHHHHH
Q 008934 23 IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY---VGRYRMIGF-GCFTCLLGM 98 (548)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~---~Grk~~~~~-~~~~~~~~~ 98 (548)
-...+..++.+-.+..++..|+++..|+|+..+|.+..+.-+.-++.-|+.|.+.||. +||+|..++ +.+-+++..
T Consensus 18 g~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~ 97 (467)
T COG2211 18 GLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVA 97 (467)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHH
Confidence 3355666777777888999999999999999999999999999999999999999974 588776665 446677777
Q ss_pred HHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHH
Q 008934 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (548)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (548)
.++..++. ...+.+....++...+.++++........++.++..++.+ +|.+..++.
T Consensus 98 ~l~F~~p~-----------------~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~------ER~~l~s~R 154 (467)
T COG2211 98 VLLFITPD-----------------FSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ------ERASLTSWR 154 (467)
T ss_pred HHHHcCCC-----------------cccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH------HHHHHHHHH
Confidence 77766541 0112356667777889999999999999999999988764 499999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh-------ccCchhhhHHHHHHHHHHHHHHHhcCCceec-cCCCCC-CchhHHHHHHHHHh
Q 008934 179 YVFVSASSIVAVTCIVYIQD-------NLGWKVGFGVPAVIMLLSALSFFLASPFYVK-SKANTS-LLPGLTQVLVASFK 249 (548)
Q Consensus 179 ~~~~~ig~~~gp~i~~~l~~-------~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~ 249 (548)
....++|..+...+.+.+.. ..||+..-.+.+++..++.++++...+++.. .++.++ ...+..+.+...++
T Consensus 155 ~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~ 234 (467)
T COG2211 155 MVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFK 234 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHHc
Confidence 99999887666555544432 2467776666666666666666665554433 222222 33333444444455
Q ss_pred hccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCC
Q 008934 250 NRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHV 329 (548)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 329 (548)
||.+..- ...++... +..+ .+.-.........+
T Consensus 235 Nrp~~~~---------------------l~~~l~~~----------------------~~~~----i~~s~~~yy~~y~l 267 (467)
T COG2211 235 NRPLLLL---------------------LLMNLLLF----------------------IAFN----IRGSIMVYYVTYVL 267 (467)
T ss_pred cchHHHH---------------------HHHHHHHH----------------------HHHH----HHhhhhheeEEEEc
Confidence 5433220 00000000 0000 01000011112222
Q ss_pred CCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008934 330 TPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGI 409 (548)
Q Consensus 330 g~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~ 409 (548)
+ ......-..........+. ..+++.++.+| ++.++.+.+|.++..++...+.+..
T Consensus 268 g------~~~l~~~~~~~~~~~~~l~---~~~~~p~L~~~---~gkk~~~~~~~~~~~i~~~~~~f~~------------ 323 (467)
T COG2211 268 G------DPELFAYLLLLASGAGLLI---GLILWPRLVKK---FGKKKLFLIGLLLLAVGYLLLYFTP------------ 323 (467)
T ss_pred C------ChHHHHHHHHHHHHHHHHH---HHHhHHHHHHH---hchHHHHHHHHHHHHHHHHHHHhhc------------
Confidence 2 1111111111111111111 12233344444 5666888899999888888887753
Q ss_pred CCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008934 410 SDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK-------SMSSIASTLSGAGLSAANLVASLIMNAVDD 482 (548)
Q Consensus 410 ~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~-------~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~ 482 (548)
.-+.+++++..++.++|.+..++..++++.+.++. +..|...|...+.+=+|.+++..+.+.+..
T Consensus 324 --------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 324 --------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred --------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12566677777899999999999999998877654 456889999999999999999999998776
Q ss_pred hhc
Q 008934 483 ITK 485 (548)
Q Consensus 483 ~~~ 485 (548)
..+
T Consensus 396 ~~G 398 (467)
T COG2211 396 AIG 398 (467)
T ss_pred HcC
Confidence 554
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.6e-12 Score=139.09 Aligned_cols=141 Identities=12% Similarity=0.029 Sum_probs=126.2
Q ss_pred hHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcC
Q 008934 45 CREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCES 124 (548)
Q Consensus 45 ~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 124 (548)
.+..+.+.....+..+++.++..+++++.|+++||+ |||++++.++++.+++.++.+++.
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~------------------- 169 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAP------------------- 169 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhC-------------------
Confidence 456778888999999999999999999999999995 999999999999999998888877
Q ss_pred CCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchh
Q 008934 125 ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKV 204 (548)
Q Consensus 125 ~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~ 204 (548)
+.+.+++.|++.|++.++...+...+++|.+++++ |+.+.++ ......++.++|..++++.. +||+
T Consensus 170 ----~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~-------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~ 235 (521)
T KOG0255|consen 170 ----NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ-------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRW 235 (521)
T ss_pred ----cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch-------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHH
Confidence 88999999999999999999999999999999954 8999999 88888888999999999887 8999
Q ss_pred hhHHHHHHHHHHHHH
Q 008934 205 GFGVPAVIMLLSALS 219 (548)
Q Consensus 205 ~f~i~~~~~~i~~~~ 219 (548)
.+++..+..++.++.
T Consensus 236 ~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 236 LFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999877766655444
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-11 Score=127.06 Aligned_cols=388 Identities=16% Similarity=0.074 Sum_probs=218.9
Q ss_pred HHHhhHHHHHHHHhHhhc----------------------------CCh-hHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008934 32 ATVGFTPNMILYLCREYN----------------------------MET-TAATNIIFIWTAATNFLPIVGALLADSYVG 82 (548)
Q Consensus 32 ~~~~~~~~l~~yl~~~lg----------------------------~s~-~~ag~i~~~~~~~~~~~~~~~G~laDr~~G 82 (548)
+...+..+.|.|+++... .+. +-.+...++..+...+..|+-|-++|+. |
T Consensus 20 ~~~i~t~~~p~~~~~~a~~~g~~~~~~~~~c~~~~~~c~~~~~g~~~~~~s~~~~~~sis~l~~all~P~lGa~aD~~-~ 98 (477)
T PF11700_consen 20 ATVIVTFFFPPYFQSLAREAGVLPGDPTQPCSDSDDDCVVPFFGSWIDTSSLWLYANSISGLLQALLAPFLGAIADYG-G 98 (477)
T ss_pred hhhhHHHHHHHHHHHHHHhcccccccccCcccccCCccccccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHccc-c
Confidence 445567788999887641 111 2235678888999999999999999996 8
Q ss_pred chHHHHHHHH-HHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCC
Q 008934 83 RYRMIGFGCF-TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDK 161 (548)
Q Consensus 83 rk~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~ 161 (548)
+||.++.... +..+...++.+.. ..+.+...+..++..++.+......++++.|..++
T Consensus 99 ~Rk~~l~~~~~~~~~~~~~l~~v~---------------------~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~ 157 (477)
T PF11700_consen 99 RRKRFLLIFTLLGVLATALLWFVS---------------------PGQWWLALVLFIIANVGYEASNVFYNAYLPDLARP 157 (477)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhC---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCC
Confidence 8777666554 4444555555432 12445555555566688888889999999999988
Q ss_pred CCCCcc-------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------cCchhhhHHHHHHHH
Q 008934 162 GDGTKS-------------------KGALQSYFSWYYVFVSASSIVAVTCIVYIQDN--------LGWKVGFGVPAVIML 214 (548)
Q Consensus 162 ~~~~~~-------------------~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~--------~g~~~~f~i~~~~~~ 214 (548)
++..+. ..+|++..+.-+..+++|+++...+.-.+... .+.|..+.+.++-.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~ 237 (477)
T PF11700_consen 158 EPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWL 237 (477)
T ss_pred ChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHH
Confidence 764100 01127888888888888888877665444322 224666776666544
Q ss_pred HHHHHHHhcCCceec--cCCCC-CCchhHHHHHHHHHhhccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCC
Q 008934 215 LSALSFFLASPFYVK--SKANT-SLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHP 291 (548)
Q Consensus 215 i~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (548)
+..+-.++..|+.++ ..+.. +....-.+-++..+|+.+. .+ ....++-
T Consensus 238 vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~-~~--------------------~~~~fLi-------- 288 (477)
T PF11700_consen 238 VFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRK-LR--------------------QLFLFLI-------- 288 (477)
T ss_pred HHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHh-Ch--------------------HHHHHHH--------
Confidence 444433444333322 11111 1122223333333333211 10 1111110
Q ss_pred CCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 008934 292 EQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPC 371 (548)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~ 371 (548)
-|.++ .+-+..+..+.. ......++ ++... .+...+...+....-..+..++.+|
T Consensus 289 ------------a~~l~-~dg~~ti~~~~~-i~a~~~lg----~s~~~-----l~~~~l~~~i~a~~Ga~~~g~l~~r-- 343 (477)
T PF11700_consen 289 ------------AYFLY-SDGVNTIISFAG-IYATEVLG----MSTTQ-----LIVFGLVVQIVAIIGALLFGWLQDR-- 343 (477)
T ss_pred ------------HHHHH-HHHHHHHHHHHH-HHHHHhcC----cCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 01111 112222221100 01111121 22222 2222222233222233344444444
Q ss_pred CCCch--HHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 008934 372 QLSLK--LRMGIGLLFSTASMTAWAI--VEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYY 447 (548)
Q Consensus 372 ~~~~~--~~~~iG~~l~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~ 447 (548)
++++ +.+.+++++..+..+...+ .. + .-| ..+.|.+.+..++.|+..+-..+..-++..
T Consensus 344 -~g~k~~~~l~~~l~~~~~i~~~g~~G~~~----~---~~g---------~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~ 406 (477)
T PF11700_consen 344 -FGPKTKRTLLISLILWIIIPLYGLFGFWP----S---FFG---------LKSPWEFWVLAVLIGLFMGGIQSASRSLFS 406 (477)
T ss_pred -hCCchhHHHHHHHHHHHHHHHHHHHHhhh----c---ccC---------cccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5544 4444444444222222211 11 0 000 114455666667899999999999999999
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008934 448 TELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 527 (548)
Q Consensus 448 ~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 527 (548)
+..|+++++...|++.+..-..+.+||++.+.+.+.++ +..+.+..+.++.++++++.+....++
T Consensus 407 ~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg---------------~~r~g~~~l~~lf~~gl~ll~~v~~~~ 471 (477)
T PF11700_consen 407 RLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG---------------SQRYGFLFLLVLFLIGLILLFFVDVEK 471 (477)
T ss_pred HhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------CchhHHHHHHHHHHHHHHHHhhccchh
Confidence 99999999999999999999999999999999887663 234557777888888877775554333
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.9e-11 Score=123.39 Aligned_cols=376 Identities=15% Similarity=0.120 Sum_probs=223.4
Q ss_pred HhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----ch-HHHHHHHHHHHHHHHHHHHhcccCCCCCCCccc
Q 008934 44 LCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVG-----RY-RMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQ 117 (548)
Q Consensus 44 l~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~G-----rk-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 117 (548)
+..|++++..-.+..+....+... ..+..|+.||+. + || .-+..|..++..+..+.+.+..... .+.++
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~---~~~~~ 80 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA---ESGQQ 80 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc---ccccc
Confidence 456899999999988888877766 589999999996 6 55 4455566677777666665442111 00000
Q ss_pred ccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008934 118 LRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ 197 (548)
Q Consensus 118 ~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~ 197 (548)
.............++..+.|+|.+....+..++++|..||++ |.++.++.+.+.-+|.+++..+.+.+.
T Consensus 81 ----~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~-------R~~~v~ivw~Mli~G~iv~ai~~g~lL 149 (403)
T PF03209_consen 81 ----SSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER-------RPRVVAIVWVMLIVGIIVSAIVFGRLL 149 (403)
T ss_pred ----cccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh-------hhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 011111122345556777899999999999999999999955 899999999999999999999999888
Q ss_pred hccCchhhhHHH----HHHHHHHHHHHHhcCCceeccC-CCCCCchhHHHHHHHHHhhccCCCCCcchhhhhhcCCCCcc
Q 008934 198 DNLGWKVGFGVP----AVIMLLSALSFFLASPFYVKSK-ANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMR 272 (548)
Q Consensus 198 ~~~g~~~~f~i~----~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (548)
+.++..-..-+. .+..++.++..+-..++.++.+ ..+++.............++.. .
T Consensus 150 ~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a-------~----------- 211 (403)
T PF03209_consen 150 DPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQVWASPQA-------R----------- 211 (403)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHHHhCCCh-------h-----------
Confidence 877643222222 1222222223233333332222 1112222222111111111100 0
Q ss_pred cCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCceecCcc---cchhhHHHHH
Q 008934 273 LMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGS---FNIFAILTLT 349 (548)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~~~~---~~~~~~~~ii 349 (548)
..+.++......+. .+ .--++-+-|.-|+++.+. ++.+.....+
T Consensus 212 ----~f~~fl~l~t~a~~-------------------------~Q----D~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L 258 (403)
T PF03209_consen 212 ----RFFVFLFLGTLAFF-------------------------MQ----DVILEPYGGEVFGMSVGETTRLTAFWGGGTL 258 (403)
T ss_pred ----HHHHHHHHHHHHHH-------------------------hh----HHHcCCchhHHcCCCHHHHHHHHHHHHHHHH
Confidence 00011111100000 00 111111111124455533 3333344444
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHH
Q 008934 350 IWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLV 429 (548)
Q Consensus 350 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~ 429 (548)
+...+.... ..+ + .++++...+|....++++....... ..-+.|.+.+..+
T Consensus 259 ~G~~~~g~~----l~~---~---~~~~~~a~~G~~~~~~~f~lii~a~-------------------~~~~~~~~~~~~~ 309 (403)
T PF03209_consen 259 LGMLLAGFL----LSR---R---LGKKRTAALGCLLGALAFALIILAG-------------------PLGSPWLFRPGVF 309 (403)
T ss_pred HHHHHHHHH----hcC---C---CCchHHHHHHHHHHHHHHHHHHHHH-------------------hcccchHHHHHHH
Confidence 444443322 221 2 4445556677777777776655443 1125778899999
Q ss_pred HHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHH
Q 008934 430 LSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLL 509 (548)
Q Consensus 430 l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 509 (548)
++|+|.++......+...+.+++++.|+.+|.|...+.++..+|.++.+.+.+... ++..+.....|..+|.+=
T Consensus 310 l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~------~~~~~~~~~aY~~VF~lE 383 (403)
T PF03209_consen 310 LLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR------ALFGNSPALAYGVVFALE 383 (403)
T ss_pred HHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhccCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998776653 121111223567777776
Q ss_pred HHHHHHHHHHHH
Q 008934 510 TALSMANFLYYL 521 (548)
Q Consensus 510 ~~~~~v~~~~~~ 521 (548)
++..++++++..
T Consensus 384 a~ll~~a~~ll~ 395 (403)
T PF03209_consen 384 AVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHH
Confidence 666666655443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-10 Score=125.56 Aligned_cols=174 Identities=13% Similarity=0.068 Sum_probs=126.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Q 008934 14 GGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT 93 (548)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 93 (548)
++|......+.++.+... .|++. .....+++++|+|..+.+++.++.. ......+++|+++||+ |||+++.++.++
T Consensus 25 ~Rw~~lva~~~~~~~~g~-~y~fs-v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll 100 (591)
T PTZ00207 25 RRFALLVLGAFCSICTSF-MYAFN-LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTV 100 (591)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence 334433333334443333 34444 3444679999999999999987744 3445677899999996 999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHH
Q 008934 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (548)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (548)
+.++.++++++..- . . ..+.+.+.+.|++.|+|.+...+.....+.+++|+ +|+.
T Consensus 101 ~~iG~ll~ala~~~-~-i---------------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~--------~RG~ 155 (591)
T PTZ00207 101 FCLGTLLFALTFQE-V-I---------------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS--------NRGA 155 (591)
T ss_pred HHHHHHHHHHHhcc-c-c---------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh--------hhHH
Confidence 99999999886310 0 0 12678899999999999998888888889999973 2899
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhhccCchhhhHHHHHHHHHHHH
Q 008934 174 YFSWYYVFVSASSIV-AVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218 (548)
Q Consensus 174 ~~~~~~~~~~ig~~~-gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~ 218 (548)
+.++.....++|+++ ++...+++. .+|+..|++.++..++..+
T Consensus 156 a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~l 199 (591)
T PTZ00207 156 VVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGI 199 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHH
Confidence 999999999999975 555555554 3577777776665554433
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-12 Score=132.82 Aligned_cols=139 Identities=19% Similarity=0.182 Sum_probs=104.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccc
Q 008934 50 METTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQ 129 (548)
Q Consensus 50 ~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (548)
+++...+.+..+..++..+++++.||++||+ |||+++...+++++++++.++++...+. ...-
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~~~~----------------~~~~ 143 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVGTTS----------------PLGV 143 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCCCCC----------------Ccch
Confidence 6778889999999999999999999999996 9999999999999999986665432111 1124
Q ss_pred hHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH----HHHHHHHHHHHHHHHHHHHhhhc------
Q 008934 130 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS----WYYVFVSASSIVAVTCIVYIQDN------ 199 (548)
Q Consensus 130 ~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~ig~~~gp~i~~~l~~~------ 199 (548)
.+++...|+++|+|.|+-+|...+..+|..-+.. |+...+ ...++.-.|++++.++.+-....
T Consensus 144 m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~-------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~ 216 (538)
T KOG0252|consen 144 MMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT-------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPST 216 (538)
T ss_pred hhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc-------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCC
Confidence 6778888999999999999999999999887744 555444 44455555555555444433221
Q ss_pred -----cCchhhhHHHHHH
Q 008934 200 -----LGWKVGFGVPAVI 212 (548)
Q Consensus 200 -----~g~~~~f~i~~~~ 212 (548)
.-||..|.+.++.
T Consensus 217 ~~~ld~vWRl~~glg~vp 234 (538)
T KOG0252|consen 217 YPHLDGVWRIIFGLGAVP 234 (538)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 1288887766553
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-12 Score=133.96 Aligned_cols=175 Identities=10% Similarity=0.037 Sum_probs=132.9
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
+|..+..+...+.....++....++|.|+++++|+++.+++++.+...+...++.+++|+++||+ ||||.+..+.+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~ 293 (393)
T PRK15011 215 RRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGV 293 (393)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHH
Confidence 34444444444555555666667899999999999999999998888888888999999999996 99998887766554
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
+......... +.+..++.+++.+++.|...+..+....|.+|+ + |++++
T Consensus 294 ~~~~~~~~~~-----------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~-------~g~~~ 342 (393)
T PRK15011 294 CFYAGMLMAH-----------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q-------AGSAT 342 (393)
T ss_pred HHHHHHHHHh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C-------cchHH
Confidence 4433333222 445566677777777777666677777888874 2 68899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHh
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~ 222 (548)
++++...++|..++|.++|++.+++||+..|.+.++..+++++..+.
T Consensus 343 ~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 343 TLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99888899999999999999999899999998887777666655543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-12 Score=139.10 Aligned_cols=176 Identities=12% Similarity=0.016 Sum_probs=131.7
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
+.+|......++....+++...++|.|+++++|+|+.++++......++..++.+++|+++||+ |||+.+..+..+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI 336 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 4466667777777888888899999999999999999999999999999999999999999996 999887665544443
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+..+..... ..+.....+.+++.|+..............|.+|++ .|+++.+
T Consensus 337 ~~~~~~~~~---------------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~-------~~g~a~g 388 (467)
T PRK09556 337 IFTLGVYQH---------------------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKK-------AIGVANG 388 (467)
T ss_pred HHHHHHHHh---------------------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchh-------hHHHHHH
Confidence 332222211 013444556666666543333333345667999884 4899999
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhh------------ccCchhhhHHHHHHHHHHHHHHH
Q 008934 177 WYYVFVSA-SSIVAVTCIVYIQD------------NLGWKVGFGVPAVIMLLSALSFF 221 (548)
Q Consensus 177 ~~~~~~~i-g~~~gp~i~~~l~~------------~~g~~~~f~i~~~~~~i~~~~~~ 221 (548)
+.+...++ |++++|.+.|++.+ ..||+..|++.+++.+++.+..+
T Consensus 389 i~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 389 IKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 99999887 77999999999999 56899999888777776655443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.4e-10 Score=111.57 Aligned_cols=341 Identities=15% Similarity=0.138 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH
Q 008934 24 ANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWS 103 (548)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~ 103 (548)
++.+=.|..+-++-+.+. -+++++|+|.+.+|.+.+...++..+.+++..+|+.|+ |.+|.+..++++.++|.++=..
T Consensus 19 lia~NLR~~itsvgPLL~-~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~ 96 (395)
T COG2807 19 LIAFNLRPAITSVGPLLD-EIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSL 96 (395)
T ss_pred HHHhccchhhhhhhhhHH-HHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhc
Confidence 344445666666655555 45889999999999999999999999999999999995 9999999999999988877654
Q ss_pred hcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHH
Q 008934 104 TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVS 183 (548)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 183 (548)
. +...++.+-.+.|.|.+......++++-+.||++ -+..+++|....+
T Consensus 97 ~------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~--------~~~mtglYs~sl~ 144 (395)
T COG2807 97 G------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR--------VGLMTGLYSTSLG 144 (395)
T ss_pred c------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc--------hhhHHhHHHHHHH
Confidence 2 3567888889999999999999999999999974 4788899999999
Q ss_pred HHHHHHHHHHHHhhhcc-CchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccCCCCCcchhh
Q 008934 184 ASSIVAVTCIVYIQDNL-GWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEE 262 (548)
Q Consensus 184 ig~~~gp~i~~~l~~~~-g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (548)
+|+++++.+...+.++. ||+..+.+=+...++++++.+....|++....+.+..++ ..
T Consensus 145 ~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~~~~~~---------------------~~ 203 (395)
T COG2807 145 AGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQAASIATKLVSV---------------------RK 203 (395)
T ss_pred HHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccc---------------------cc
Confidence 99999999999998887 799988877776666665544332222111111110000 00
Q ss_pred hhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCceecCcccch
Q 008934 263 MYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNI 342 (548)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~~~~~~~ 342 (548)
.+.++ .-|.-....-.. ..+..-.+.-.-.+ ..|+. ++...-..
T Consensus 204 vw~~~-----------~aW~vtLfmGlq---------------S~~~Y~~~~WLP~i----li~~G------~sa~~aG~ 247 (395)
T COG2807 204 VWRSP-----------LAWQVTLFMGLQ---------------SLLYYIVIGWLPAI----LIDRG------LSAAEAGS 247 (395)
T ss_pred cccCc-----------hhHHHHHHHHhh---------------HHHHHHHHHHHHHH----HHHcC------CCHHHhhh
Confidence 11110 000000000000 00000001111111 12222 22222222
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchH
Q 008934 343 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAM 422 (548)
Q Consensus 343 ~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 422 (548)
+.++..++-.| ..+..|+..+. + .+.+........++.+++..+.+.. .+..++
T Consensus 248 llsl~~l~~~~--~~ll~P~la~R--~---~n~r~~~~~~~~~~l~G~~G~~~~P-------------------~~~~~l 301 (395)
T COG2807 248 LLSLMQLAQLP--TALLIPLLARR--S---KNQRPLVVLALLLMLVGLVGLLLAP-------------------GQLPIL 301 (395)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHH--h---cccchHHHHHHHHHHHHHHHHHHhh-------------------hhHHHH
Confidence 22222222222 22344544432 1 2333445566666666666665543 111222
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccc-CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008934 423 WQLPYLVLSGLAMAFNMIGQTEFYYTEL-PKSMSSIASTLSGAGLSAANLVASLIMNAVDDITK 485 (548)
Q Consensus 423 ~~i~~~~l~g~g~~~~~~~~~~~~~~~~-P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~ 485 (548)
| .++.|+|.+..+|-...++...+ .++..+.-+|+.+...++=...||.++|.+-+.++
T Consensus 302 w----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 302 W----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred H----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 2 48899999999999888887764 45556677888888888888899999999876653
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=134.28 Aligned_cols=177 Identities=11% Similarity=0.050 Sum_probs=130.7
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
+.....+...++..+.+|++..++|.|+++++|++..+++++.....++..++.+++|+++||+ |||+++.++.+...+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~ 328 (490)
T PRK10642 250 RSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALFV 328 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHH
Confidence 3333344445566788999999999999999999999888888888899999999999999996 999998888765443
Q ss_pred HHHH-HHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 97 GMVL-LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 97 ~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
+... +.... ..+...+++++++.+++.+...+....+..+.+|++. |++++
T Consensus 329 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~-------Rg~~~ 380 (490)
T PRK10642 329 LAIPAFILIN---------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI-------RYSAL 380 (490)
T ss_pred HHHHHHHHHh---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc-------chHHH
Confidence 3322 22111 1134566777888888777777777888889999854 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC-chhhhHHHHHHHHHHHHHHHh
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~ 222 (548)
++.+....+++.++|.+.+++.+..+ |+.++++..+..+++++..++
T Consensus 381 g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 381 AAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 98777777788899999999887654 676666555544444444433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-11 Score=125.80 Aligned_cols=173 Identities=22% Similarity=0.262 Sum_probs=153.4
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchH-HHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYR-MIGFGCFTCL 95 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~-~~~~~~~~~~ 95 (548)
|.++......++..........+++.|+.+.+|.++.+.+++.....++..++.++.|+++||+ |||+ .+.++..+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 253 (352)
T cd06174 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAA 253 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Confidence 4556666677888888888999999999988899999999999999999999999999999996 9999 9999999888
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
++........ +.+...+..++.+++.+...+...+++.|..|++ +|++.+
T Consensus 254 i~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 303 (352)
T cd06174 254 LGLLLLALAP-----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPE-------ARGTAS 303 (352)
T ss_pred HHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHH-------HHHHHH
Confidence 8888777654 5677888899999999999999999999999983 499999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHH
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSF 220 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~ 220 (548)
+..+...++|..++|.+.+.+.+..+|+..|.+.++..+++.+..
T Consensus 304 ~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 304 GLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998999999999888777666544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-11 Score=128.99 Aligned_cols=167 Identities=15% Similarity=0.125 Sum_probs=133.5
Q ss_pred HHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhc
Q 008934 26 EAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTT 105 (548)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~ 105 (548)
..+..++++....+++.|+. +.|++ +.+.....+.++..++.++.|+++||+ ||||.+..+..+..++..+....+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~ 300 (399)
T PRK05122 225 LALASIGFGTIATFITLYYA-ARGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP 300 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH-Hcccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455667777788888876 45663 456667778888889999999999996 999999988888777776666543
Q ss_pred ccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHH
Q 008934 106 ILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSAS 185 (548)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 185 (548)
+.+..++.+++.|++.+...+.......|.+|+ ++|++++++++...++|
T Consensus 301 -----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g 350 (399)
T PRK05122 301 -----------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPP-------QNRGAALGAYSVFLDLS 350 (399)
T ss_pred -----------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHH
Confidence 455677778899999998888888888888887 44899999999999999
Q ss_pred HHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCc
Q 008934 186 SIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (548)
Q Consensus 186 ~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~ 226 (548)
..++|.+.|++.++.||+..|++.+++.+++.+......++
T Consensus 351 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 351 LGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999998888777776665554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=130.37 Aligned_cols=170 Identities=12% Similarity=0.120 Sum_probs=133.4
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
+.++......++...+.+++..++|.|+++++|+|+.+++.+.+.+.++..++.+++|+++||+ +||+++..+..+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~ 283 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV 283 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence 3445555566666777888999999999999999999999999999999999999999999996 999998877766555
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
...+..... +.....+..++.|++.+...+...+...+..|++ +++..+
T Consensus 284 ~~~~~~~~~-----------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~--------~~~~~g 332 (394)
T PRK03699 284 LMYLFVNTD-----------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA--------SPKLVN 332 (394)
T ss_pred HHHHHHHcC-----------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--------CHHHHH
Confidence 544444322 3344555667778888877788888877777643 355677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHH
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~ 218 (548)
+.....++|+.++|.+.|++.+..|++..|++.+++.+++.+
T Consensus 333 ~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 333 FILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV 374 (394)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence 777888999999999999999999999999887776665544
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-11 Score=127.18 Aligned_cols=170 Identities=10% Similarity=0.096 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Q 008934 20 PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99 (548)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~ 99 (548)
+......++...........+|.|+++++|.++.+++++..........+.+++|+++||+ |||+++.++.+...+...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~ 280 (375)
T TIGR00899 202 RLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYT 280 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHH
Confidence 3333344444444555567789999999999999999988888777888899999999996 999999887766555544
Q ss_pred HHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHH
Q 008934 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY 179 (548)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 179 (548)
.....+ +.+...+.+.+.+++.+...+...++..|..|++ +++++++++
T Consensus 281 ~~~~~~-----------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 329 (375)
T TIGR00899 281 GLAADN-----------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR--------AGAATTLYT 329 (375)
T ss_pred HHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch--------hhHHHHHHH
Confidence 444333 4556666778888888888888888888887652 568999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHH
Q 008934 180 VFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (548)
Q Consensus 180 ~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~ 221 (548)
...++|..++|.+.|++.+..||+..|++.++..+++.+...
T Consensus 330 ~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 330 NTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988887776665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=127.80 Aligned_cols=170 Identities=11% Similarity=0.055 Sum_probs=134.5
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 008934 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (548)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (548)
..+......++..+.......+.+.|. +++|.++.+++.+.+...+...++.++.|+++||+ |||+.+.++.++..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~ 283 (377)
T TIGR00890 206 QFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVG 283 (377)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHH
Confidence 344444445555555555666677774 57899999999999999999999999999999996 9999999998888887
Q ss_pred HHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHH
Q 008934 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (548)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (548)
..+....+ ..+...+....++.+++.+...+..+++..|.+|+++ |++++++
T Consensus 284 ~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~-------~~~~~g~ 335 (377)
T TIGR00890 284 MAAMLFIP---------------------MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN-------SAANYGF 335 (377)
T ss_pred HHHHHHcc---------------------cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh-------hhhHhHH
Confidence 77666533 0122334455677788888888888899999999844 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHH
Q 008934 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 217 (548)
Q Consensus 178 ~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~ 217 (548)
.+...++|..++|.+.|++.++.||+..|.+.+++.++++
T Consensus 336 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 336 LYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988877665543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-11 Score=127.15 Aligned_cols=151 Identities=15% Similarity=0.075 Sum_probs=127.0
Q ss_pred hHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcC
Q 008934 45 CREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCES 124 (548)
Q Consensus 45 ~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 124 (548)
.+++|+...+-+.+.+++.++++++.+++|+|.||+ ...+.+..+.+.+.+..++....+
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~------------------- 132 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH------------------- 132 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 357888889999999999999999999999999996 877877777776666554554444
Q ss_pred CCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh------h
Q 008934 125 ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ------D 198 (548)
Q Consensus 125 ~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~------~ 198 (548)
+.+.+++.|++.|+..+..+|+...+++.++.+++ |+.-+++++...++|.++|.++...+. .
T Consensus 133 ----s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e-------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~ 201 (495)
T KOG2533|consen 133 ----SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE-------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG 201 (495)
T ss_pred ----hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh-------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence 67889999999999999999999999999999844 899999999999999999999988763 3
Q ss_pred ccCchhhhHHHHHHHHHHHHHHHhcCCc
Q 008934 199 NLGWKVGFGVPAVIMLLSALSFFLASPF 226 (548)
Q Consensus 199 ~~g~~~~f~i~~~~~~i~~~~~~~~~~~ 226 (548)
..||++.|++.+++.++..++.++..|.
T Consensus 202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 202 LAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred cCCceeehhHHHHHHHHHHheEEEEecC
Confidence 4689999999998877766665555543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-11 Score=129.71 Aligned_cols=179 Identities=8% Similarity=0.030 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCC--------hhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHH
Q 008934 19 LPFIIANEAFERMATVGFTPNMILYLCREYNME--------TTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFG 90 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s--------~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~ 90 (548)
++..+...++..........+++.|++ +.|.+ ....+.+.++..+...++.++.|+++||+ |||+++.++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~ 287 (418)
T TIGR00889 210 MAIFFFFSMLLGAPLQITNIFGNGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLS 287 (418)
T ss_pred eeeHHHHHHHHHhHHHHHHHhHHHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHH
Confidence 344445555555555556677788875 45544 36678999999999999999999999996 999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchh
Q 008934 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGA 170 (548)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (548)
.++..++..++..... +..+.+.+++.+++.|++.+...++...++.|.+|+ +.
T Consensus 288 ~~~~~v~~~l~~~~~~-------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~-------~~ 341 (418)
T TIGR00889 288 LVAWALRFGFFAYGDP-------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV-------HI 341 (418)
T ss_pred HHHHHHHHHHHHHcCc-------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HH
Confidence 9988887666654220 001245567778899999998889999999999998 45
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHhhhc------cCchhhhHHHHHHHHHHHHHHHhcCC
Q 008934 171 LQSYFSWYY-VFVSASSIVAVTCIVYIQDN------LGWKVGFGVPAVIMLLSALSFFLASP 225 (548)
Q Consensus 171 r~~~~~~~~-~~~~ig~~~gp~i~~~l~~~------~g~~~~f~i~~~~~~i~~~~~~~~~~ 225 (548)
|++++++.+ ...++|.++||.++|++.++ +||+..|.+.+++.+++.+.+.+..+
T Consensus 342 ~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 342 RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999997 56789999999999999987 46999998887776666555544443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.3e-11 Score=124.88 Aligned_cols=173 Identities=10% Similarity=-0.042 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Q 008934 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (548)
++......++.....++...+++.|+++++|+|+.+++++.....++..++.++.|+++||+ |||+.+ .+..+..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~ 284 (390)
T PRK03545 207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL 284 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence 34444455556666677778889999988999999999999999999999999999999996 987654 4444444444
Q ss_pred HHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHH
Q 008934 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (548)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (548)
.+..... .+.+.+.+..++.|++.+...+...+.+.+..|+ + |+++++++
T Consensus 285 ~~l~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~-------~~~~~g~~ 334 (390)
T PRK03545 285 LLLLPAA----------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-A-------TDVAMALF 334 (390)
T ss_pred HHHHHHh----------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-c-------HHHHHHHH
Confidence 3332211 1455666777788888877777777887777653 2 78999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhc
Q 008934 179 YVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLA 223 (548)
Q Consensus 179 ~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~ 223 (548)
+...++|..+||.++|++.+++|++..|+..+++.+++.+.....
T Consensus 335 ~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 335 SGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 988999999999999999999999999999888777777665543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-11 Score=135.45 Aligned_cols=135 Identities=15% Similarity=0.053 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHH
Q 008934 56 TNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYF 135 (548)
Q Consensus 56 g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 135 (548)
.....+..++..++.+++|+++||+ |||+++.++.++.+++.+++++.. +...+++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~-----------------------s~~~ll~ 653 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN-----------------------SESAMIA 653 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc-----------------------cHHHHHH
Confidence 3445566788899999999999996 999999999998888887777654 3445666
Q ss_pred HHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHH
Q 008934 136 AFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLL 215 (548)
Q Consensus 136 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i 215 (548)
.+++.+...++..+...++++|++|+ +.|++++++.+....+|+++||.+++++.+. +...+|++.+++.++
T Consensus 654 ~~~l~g~~~~~~~~~~~a~~aEl~Pt-------~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll 725 (742)
T TIGR01299 654 LLCLFGGLSIAAWNALDVLTVELYPS-------DKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALAC 725 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence 67777887778888999999999999 4599999999999999999999999988764 466788887777666
Q ss_pred HHHHHHh
Q 008934 216 SALSFFL 222 (548)
Q Consensus 216 ~~~~~~~ 222 (548)
+.++.+.
T Consensus 726 ~~ll~~~ 732 (742)
T TIGR01299 726 GGLLALK 732 (742)
T ss_pred HHHHHHh
Confidence 6555443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.5e-11 Score=127.57 Aligned_cols=176 Identities=16% Similarity=0.076 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Q 008934 20 PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99 (548)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~ 99 (548)
.......++..+.+|....+++.|+++++|+++.....+.....+...++.++.|+++||+ ||||++..+.++..++..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~ 331 (438)
T PRK09952 253 LKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIGTLSAF 331 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 3334456677888999999999999999999998776666677778888899999999996 999999888766555443
Q ss_pred HHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHH
Q 008934 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY 179 (548)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 179 (548)
.+.... .. ....+.+++..++.+++.+...+..+++..|.+|.+. |+++.++.+
T Consensus 332 ~~~~~~--~~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~-------r~tg~g~~~ 385 (438)
T PRK09952 332 PFFMAL--EA-----------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY-------RYSGAGVGY 385 (438)
T ss_pred HHHHHH--Hc-----------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch-------hHHHHhHHH
Confidence 332211 00 0123344445566678888888888999999999843 888888866
Q ss_pred HHH-HHHHHHHHHHHHHhhhcc--CchhhhHHHHHHHHHHHHHHHh
Q 008934 180 VFV-SASSIVAVTCIVYIQDNL--GWKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 180 ~~~-~ig~~~gp~i~~~l~~~~--g~~~~f~i~~~~~~i~~~~~~~ 222 (548)
... .+|++++|.+.+++.+.. +|..++...+++.+++.+..+.
T Consensus 386 ~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 386 QVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 554 589999999999998743 4788887777766666655443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-11 Score=127.52 Aligned_cols=169 Identities=15% Similarity=0.095 Sum_probs=132.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHhHhhcCChh---HHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHH
Q 008934 25 NEAFERMATVGFTPNMILYLCREYNMETT---AATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLL 101 (548)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~---~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~ 101 (548)
..++.......+.++++.|+.+..+-... ..+.+..+..++..++.+..|+++||+ |||+++..+..+..++.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~ 305 (408)
T PRK09874 227 TTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPM 305 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHH
Confidence 34445555556677888888765443222 245666677788889999999999996 99999998888777666655
Q ss_pred HHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHH
Q 008934 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181 (548)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 181 (548)
.... +.+.+.+.+++.|++.+...+...+++.+..|++. |++.+++++..
T Consensus 306 ~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~ 355 (408)
T PRK09874 306 SFVQ-----------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI-------AGRIFSYNQSF 355 (408)
T ss_pred HHhc-----------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc-------ceeeehHHHHH
Confidence 5433 45667778889999999999999999888887744 78999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcC
Q 008934 182 VSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLAS 224 (548)
Q Consensus 182 ~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~ 224 (548)
.++|..+||.++|++.+..||+..|++.+++.+++.+..+...
T Consensus 356 ~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 356 RDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887777766655443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-11 Score=127.70 Aligned_cols=163 Identities=7% Similarity=-0.042 Sum_probs=132.6
Q ss_pred HHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 008934 33 TVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKP 112 (548)
Q Consensus 33 ~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 112 (548)
.+++..++|.|+++.+|.++.+.+++.+...++..++.++.|+++||. ++++.+..+.++..++.+++...+
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~------- 310 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP------- 310 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc-------
Confidence 456777889999988999999999999999999999999999999995 888888888877777766665433
Q ss_pred CCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008934 113 PACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 192 (548)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i 192 (548)
+.+...+..++.|++.+...+...+++.|..|+ +.|++++++++...++|..+||.+
T Consensus 311 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~g~~~g~~l 367 (417)
T PRK10489 311 ----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPD-------EMLGRINGLWTAQNVTGDAIGAAL 367 (417)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HHHHHHHHHHHHHHhhhHhHHHHH
Confidence 455566677788888888777888899999998 449999999999999999999999
Q ss_pred HHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCc
Q 008934 193 IVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (548)
Q Consensus 193 ~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~ 226 (548)
.|++.+.+|++..+.+.+.+.++..++.....++
T Consensus 368 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (417)
T PRK10489 368 LGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE 401 (417)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999998888887776555544444443333
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-11 Score=125.57 Aligned_cols=177 Identities=10% Similarity=0.006 Sum_probs=137.2
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
+..+.+....++...+++++..++|.|+++ +|+++.+++.+.+.+.++..++.++.|+++||+ |||+.+.++..+..+
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~ 282 (393)
T PRK09705 205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV 282 (393)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence 445555556667778888999999999975 899999999999999999999999999999995 999999988877777
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+..+....+ . +...+ ...+.|++.+...+.......+..+++ ++|++.++
T Consensus 283 ~~~~~~~~~---~-------------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~------~~~g~~~g 332 (393)
T PRK09705 283 GFCGFIWLP---L-------------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQP------AIAGKLVA 332 (393)
T ss_pred HHHHHHHcc---c-------------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCH------HHHHHHHH
Confidence 665544322 1 11112 223567888887787777777777642 34899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccC-chhhhHHHHHHHHHHHHHHHhcCC
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFLASP 225 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~~~~ 225 (548)
+.+...++++.++|.+.|++.|+.| |+..|++.++..++...+.....+
T Consensus 333 ~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 333 FMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999876 888888877766666655554443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.3e-11 Score=123.93 Aligned_cols=157 Identities=15% Similarity=0.170 Sum_probs=122.8
Q ss_pred HHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhccc
Q 008934 28 FERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTIL 107 (548)
Q Consensus 28 ~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~ 107 (548)
...+.+.....++|.|+++ .|.++.+++.+.+...++..+++++.|+++||+ |+|+++..+.++..++..... ..
T Consensus 211 ~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~~-- 285 (381)
T PRK03633 211 ISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-SQ-- 285 (381)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-hh--
Confidence 3334445556778989875 699999999999999999999999999999996 999999888877776654432 11
Q ss_pred CCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHH
Q 008934 108 PGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 187 (548)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 187 (548)
......+.+.+++.+...|...+.+.|..|+++ ++...+.++...++|..
T Consensus 286 -----------------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~~~~~~~~lG~~ 335 (381)
T PRK03633 286 -----------------------AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE-------LVAMNQALLLSYTVGSL 335 (381)
T ss_pred -----------------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH-------HHHHHHHHHHHHHHHHH
Confidence 123345666777777778888898899888743 66777777778899999
Q ss_pred HHHHHHHHhhhccCchhhhHHHHHHHHHHHHH
Q 008934 188 VAVTCIVYIQDNLGWKVGFGVPAVIMLLSALS 219 (548)
Q Consensus 188 ~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~ 219 (548)
+||.++|++.|++||++.|.+.+.+.+++.+.
T Consensus 336 igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 336 LGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887766655443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-11 Score=128.77 Aligned_cols=177 Identities=15% Similarity=0.100 Sum_probs=122.1
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHH-HHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYV-GRYRMI-GFGCFTC 94 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~-Grk~~~-~~~~~~~ 94 (548)
+.++...+..++.....|+...++|.|++++.|++..+++++...+.++..++.+++|+++||+. |||+.. .....+.
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 332 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 44566666677777788889999999999999999999999999999999999999999999941 344332 2222333
Q ss_pred HHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHH
Q 008934 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (548)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (548)
.++...+.+.. ..+.+...+..++.|.+..........+..|.+|+++ |+++
T Consensus 333 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~-------~g~~ 384 (452)
T PRK11273 333 TIATIVYWLNP---------------------AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA-------AGTA 384 (452)
T ss_pred HHHHHHHHHhc---------------------ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh-------hhhH
Confidence 33333322211 0123333344444444332222233455678888844 8999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhhhccCchhhhHHHHHHHHHHHHHHH
Q 008934 175 FSWYYVFVSASSIV-AVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (548)
Q Consensus 175 ~~~~~~~~~ig~~~-gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~ 221 (548)
+++.+...++|+.+ +|.+.|++.|+.||+..|++.++..+++++...
T Consensus 385 ~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 385 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 99999888888655 799999999999999999888776666655443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=126.99 Aligned_cols=167 Identities=13% Similarity=0.002 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 008934 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (548)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (548)
.++......++....++....+++.|+++++|.++.+++.+.....+...++.+++|+++||+ |||+.+..+..+..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~ 298 (394)
T TIGR00883 220 PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALL 298 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHH
Confidence 466666677788888888999999999999999999999999999999999999999999996 9999887655544333
Q ss_pred H-HHHH-HhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 98 M-VLLW-STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 98 ~-~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
. .+.. ... ..+.+.+.....+.+++.+...+...+++.|.+|+++ |++++
T Consensus 299 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~-------~~~~~ 350 (394)
T TIGR00883 299 AVPLLMALLD---------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV-------RYTGA 350 (394)
T ss_pred HHHHHHHHhc---------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc-------eeeEe
Confidence 2 2221 111 1144556667778888888888999999999999855 77888
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhhccC-chhhhHHHHHHH
Q 008934 176 SWYY-VFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIM 213 (548)
Q Consensus 176 ~~~~-~~~~ig~~~gp~i~~~l~~~~g-~~~~f~i~~~~~ 213 (548)
++.+ ....+|..++|.++|++.++.| |+..++...+..
T Consensus 351 ~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 351 SLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred eehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 8754 4456899999999999999888 777666555433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.7e-11 Score=123.40 Aligned_cols=169 Identities=11% Similarity=0.043 Sum_probs=143.8
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.++..+...++...+++....+.++|++ ++|.++.++|.+.+...+...+..++.|++.||+ |+|+.+.++.+...+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence 55667777778888888889999999996 4999999999999999999999999999999996 999999999999998
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
...+.+.++ +.+.+++.+.+.|+..+...+....++.+. |+++ |+++.+
T Consensus 283 ~~~~~~~~~-----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~-------~~~~q~ 331 (382)
T TIGR00902 283 RWAIIGAIE-----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE-------IAKLQA 331 (382)
T ss_pred HHHHHHhHh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh-------HHHHHH
Confidence 888777655 677788889999999999999999999987 7643 788899
Q ss_pred HHHH-HHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHH
Q 008934 177 WYYV-FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALS 219 (548)
Q Consensus 177 ~~~~-~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~ 219 (548)
+++. ...+|..+||.++|++.|++|+ ..|.+.+++.+++.++
T Consensus 332 ~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 332 LYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 8764 5689999999999999999986 6677777766655544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=130.33 Aligned_cols=165 Identities=8% Similarity=-0.006 Sum_probs=129.3
Q ss_pred HHHHHHHHhhHHHHHHHHhHhh---cCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH
Q 008934 27 AFERMATVGFTPNMILYLCREY---NMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWS 103 (548)
Q Consensus 27 ~~~~~~~~~~~~~l~~yl~~~l---g~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~ 103 (548)
++....+......++.|+.+.+ +.+..+.+.+.++..+...++.+++|+++||+ ||||.+..+.++..++..+.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~ 311 (420)
T PRK09528 233 IGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGF 311 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHh
Confidence 3333444444556777776543 67778889999999999999999999999996 9999999988888888777776
Q ss_pred hcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHH-HHHHH
Q 008934 104 TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW-YYVFV 182 (548)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~ 182 (548)
+. +.+.+...+.+.+++.+...+....++.+.+|++. |++.++. ++...
T Consensus 312 ~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------~a~~~~~~~~~~~ 361 (420)
T PRK09528 312 AT-----------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL-------SATIYLVGFQFAK 361 (420)
T ss_pred cc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc-------eeeeeeehHHHHH
Confidence 54 56677778888998888877888888899998744 5666554 55677
Q ss_pred HHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHh
Q 008934 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 183 ~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~ 222 (548)
++|.+++|.+.|++.|.+||+..|.+.+++.++..++.+.
T Consensus 362 ~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 362 QLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999887766655544443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-09 Score=107.58 Aligned_cols=157 Identities=13% Similarity=0.070 Sum_probs=122.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHh
Q 008934 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWST 104 (548)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~ 104 (548)
..+.+-...-.....+..-++...|.+..++.++....+.+..+++..+|.++|++ ||||.+.+......+.-.+-..+
T Consensus 85 ~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s 163 (528)
T KOG0253|consen 85 MGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS 163 (528)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC
Confidence 33444444555566666777888999999999999999999999999999999995 99999988877666655555554
Q ss_pred cccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHH
Q 008934 105 TILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSA 184 (548)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 184 (548)
+ ++..+.+.|.+.+.|.|+ .|...++-.+..|... |..-.-.. ....+
T Consensus 164 p-----------------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~-------r~~~~V~~-~~wai 211 (528)
T KOG0253|consen 164 P-----------------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH-------RWLLTVMS-FFWAI 211 (528)
T ss_pred C-----------------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC-------CCcchhHH-HHHHH
Confidence 4 778899999999999999 8999999999999865 44444444 56788
Q ss_pred HHHHHHHHHHHhhhccCchhhhHHHHHHHH
Q 008934 185 SSIVAVTCIVYIQDNLGWKVGFGVPAVIML 214 (548)
Q Consensus 185 g~~~gp~i~~~l~~~~g~~~~f~i~~~~~~ 214 (548)
|.++...+.=.+...+|||+-.........
T Consensus 212 g~v~ea~law~vm~~~gwr~~l~~~~~pl~ 241 (528)
T KOG0253|consen 212 GQVFEALLAWGVMSNFGWRYLLFTSSTPLM 241 (528)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhHHH
Confidence 888888776666677899987776664333
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.8e-11 Score=124.55 Aligned_cols=166 Identities=11% Similarity=-0.047 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH
Q 008934 24 ANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWS 103 (548)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~ 103 (548)
...++....++.+..++|.|+++ .|+++.+++.+...+.++..++.++.|+++||+ |||+.+..+.+...++..++..
T Consensus 227 ~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~ 304 (406)
T PRK11551 227 ISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAA 304 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556677777888999764 799999999999999999999999999999996 9999988876666555555443
Q ss_pred hcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHH
Q 008934 104 TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVS 183 (548)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 183 (548)
.+ +.+.+.+..++.|++.++..+...++..|.+|+++ |+++.++.+....
T Consensus 305 ~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~-------~g~~~g~~~~~~~ 354 (406)
T PRK11551 305 AP-----------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV-------RGTGVGAAVAVGR 354 (406)
T ss_pred cC-----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh-------hhhhhhHHHHhhh
Confidence 32 34445556667788777778888999999999844 8999999999999
Q ss_pred HHHHHHHHHHHHhhhccC-chhhhHHHHHHHHHHHHHHH
Q 008934 184 ASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFF 221 (548)
Q Consensus 184 ig~~~gp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~ 221 (548)
+|..+||.+.|++.++.+ |...+++.....+++.+..+
T Consensus 355 ~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 355 LGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988654 55555555555444444433
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-15 Score=163.71 Aligned_cols=139 Identities=17% Similarity=0.192 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHH
Q 008934 53 TAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMP 132 (548)
Q Consensus 53 ~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (548)
.+.+++.++..++..++.+++|+++||+ |||+++.++.++..++.++..+++. ..+.+.
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~--------------------~~~~~~ 104 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPS--------------------YNNFWM 104 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccc-ccccccccccccccccccccccccc--------------------cccccc
Confidence 3568899999999999999999999996 9999999999999999988887541 015678
Q ss_pred HHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cCchhhhHHH
Q 008934 133 LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN---LGWKVGFGVP 209 (548)
Q Consensus 133 ~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~---~g~~~~f~i~ 209 (548)
+.++|++.|++.|+..+....++.|..|++. |++..++......+|..++..++-.+.+. .+||..+.+.
T Consensus 105 ~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~-------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~ 177 (451)
T PF00083_consen 105 LLIGRFLIGFGIGGAYVVSPIYISEIAPPKH-------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFG 177 (451)
T ss_pred ccccccccccccccccccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999844 88888888888888888887665444332 3599999887
Q ss_pred HHHHHHHHHH
Q 008934 210 AVIMLLSALS 219 (548)
Q Consensus 210 ~~~~~i~~~~ 219 (548)
++..++..+.
T Consensus 178 ~~~~l~~~~~ 187 (451)
T PF00083_consen 178 AIPSLLVLLL 187 (451)
T ss_pred cccccccccc
Confidence 7765544433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=108.86 Aligned_cols=132 Identities=15% Similarity=0.183 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHH
Q 008934 60 FIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGL 139 (548)
Q Consensus 60 ~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 139 (548)
+.+.++..++.++.|+++||+ |||+.+..+..+..++..+..... +.+.+.+.+++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~ 60 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS-----------------------NITVLIIARFL 60 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc-----------------------cHHHHHHHHHH
Confidence 445677888999999999996 999999999888888877776544 56778888999
Q ss_pred HHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHH
Q 008934 140 MSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALS 219 (548)
Q Consensus 140 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~ 219 (548)
.|++.+...+...+++.|.+|+++ |++++++.+...++|..++|.+.+++.+..+|+..|++.+...+++.+.
T Consensus 61 ~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (141)
T TIGR00880 61 QGFGAAFALVAGAALIADIYPPEE-------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFIL 133 (141)
T ss_pred HHHHHHHHHHhHHHHHHHHCChhh-------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999844 8999999999999999999999999999889999998887766655554
Q ss_pred HHh
Q 008934 220 FFL 222 (548)
Q Consensus 220 ~~~ 222 (548)
...
T Consensus 134 ~~~ 136 (141)
T TIGR00880 134 LAF 136 (141)
T ss_pred Hhh
Confidence 443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.1e-11 Score=125.70 Aligned_cols=191 Identities=12% Similarity=0.069 Sum_probs=149.5
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhH-hhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccc-hH
Q 008934 8 INKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCR-EYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGR-YR 85 (548)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Gr-k~ 85 (548)
+....+.+||.+++.....++....++.+.+.+-.|+++ +.+-+.+..|+++++..++..+..+..|+...|. ++ |+
T Consensus 25 ~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~ 103 (488)
T KOG2325|consen 25 PLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKK 103 (488)
T ss_pred cccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCccc
Confidence 333567889999999999999999999999999999876 5888899999999999999999999999999996 75 88
Q ss_pred HHHHHHHHHHHHHHHH-HHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCC
Q 008934 86 MIGFGCFTCLLGMVLL-WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDG 164 (548)
Q Consensus 86 ~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 164 (548)
.++.|.++.++|.++. .+.. .|. ...++++++|++.|+|.|. .+..-+++++.-..++
T Consensus 104 Pli~s~ii~~~g~llY~~l~~-~~~------------------~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~d- 162 (488)
T KOG2325|consen 104 PLIVSFLIAIIGNLLYLALAY-VPN------------------GVKYLMLVARILTGVGVGN-FAVLRAYIADASTVED- 162 (488)
T ss_pred CHHHHHHHHHHHHHHHHHHHh-ccc------------------chHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccc-
Confidence 8889999999999988 4433 232 2678999999999999887 4777888888666655
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh----hc---------cCchhhhHHHHHHHHHHHHHHHhcCCc
Q 008934 165 TKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ----DN---------LGWKVGFGVPAVIMLLSALSFFLASPF 226 (548)
Q Consensus 165 ~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~----~~---------~g~~~~f~i~~~~~~i~~~~~~~~~~~ 226 (548)
|.++++....+..+|.++||.++..+. +. .-|..+-++.+++.++.++++....++
T Consensus 163 ------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 163 ------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred ------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 788888877777777777777654433 11 114556666777666666665555443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-10 Score=124.73 Aligned_cols=177 Identities=13% Similarity=0.048 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHH-HHHHHHHH
Q 008934 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYV-GRYRMI-GFGCFTCL 95 (548)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~-Grk~~~-~~~~~~~~ 95 (548)
.++.+....++....++++..++|.|+.+++|++..+++...+.+.++..++.+++|+++||+. ++|+.. ....+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~ 323 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence 3455555566667777788889999999999999999999999999999999999999999952 222222 22111111
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
+....+.... . .+........++.|.+............+|.+|+ +.|+++.
T Consensus 324 ~~~~~~~~~~---~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~ 375 (434)
T PRK11663 324 LSVGSLWLMP---F------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHK-------EAAGAAT 375 (434)
T ss_pred HHHHHHHHcc---c------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccH-------hhHHhHH
Confidence 1111111111 0 0222222333333433222222334556777776 4499999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHh
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~ 222 (548)
++.+...++|.+++|.+.|++.++.||+..|++.+++.+++.+....
T Consensus 376 g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 376 GFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888877766655443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.6e-11 Score=124.45 Aligned_cols=157 Identities=11% Similarity=0.108 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHH
Q 008934 22 IIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLL 101 (548)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~ 101 (548)
......+.....++...++|.|+.+++|+++.+++++.....++..++.++.|+++||+ |||+.+.++..+..+.....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~ 321 (405)
T TIGR00891 243 LVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPV 321 (405)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHH
Confidence 33444445555667778899999999999999999999999999999999999999996 99999988876553322222
Q ss_pred HHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHH
Q 008934 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181 (548)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 181 (548)
.... .+.+.+.+..++.+...+...+..++++.|.+|+++ |++++++.+..
T Consensus 322 ~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~ 372 (405)
T TIGR00891 322 FAIG----------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ-------RAAGLGFTYQL 372 (405)
T ss_pred HHhC----------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch-------hHHHhhHHHHH
Confidence 1111 134455566566777777777888899999998844 89999999999
Q ss_pred HHHHHHHHHHHHHHhhhccC-chhhhHH
Q 008934 182 VSASSIVAVTCIVYIQDNLG-WKVGFGV 208 (548)
Q Consensus 182 ~~ig~~~gp~i~~~l~~~~g-~~~~f~i 208 (548)
.++|+.++|.+.|++.++.| |+..|..
T Consensus 373 ~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 373 GNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 99999999999999999888 7766554
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-10 Score=122.62 Aligned_cols=163 Identities=13% Similarity=0.134 Sum_probs=132.1
Q ss_pred HHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhc
Q 008934 26 EAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTT 105 (548)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~ 105 (548)
.++....+..+..+.+.|+++ .|++. .+.....+.++..+++++.|++.||+ ||||.+..+..+..++..+.....
T Consensus 225 ~~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~ 300 (392)
T PRK12382 225 LALQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP 300 (392)
T ss_pred HHHHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc
Confidence 344456666777888888764 56654 56667778888889999999999996 999999999888888777666533
Q ss_pred ccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHH
Q 008934 106 ILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSAS 185 (548)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 185 (548)
+.+...+..++.|++.+...+...+...|.+|+ ++|++++++++...++|
T Consensus 301 -----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g 350 (392)
T PRK12382 301 -----------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPS-------QVRGTALGGYAAFQDIA 350 (392)
T ss_pred -----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHH
Confidence 455667778889999998888888888999887 44999999999999999
Q ss_pred HHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHh
Q 008934 186 SIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 186 ~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~ 222 (548)
..++|.+.|++.++.||+..|.+.+++.+++.+..+.
T Consensus 351 ~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 351 YGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988877776665543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-09 Score=109.99 Aligned_cols=370 Identities=15% Similarity=0.090 Sum_probs=202.1
Q ss_pred HhhHHHHHHHHhHhhcC---Ch----hHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH-HHHHHHHHHHHhc
Q 008934 34 VGFTPNMILYLCREYNM---ET----TAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF-TCLLGMVLLWSTT 105 (548)
Q Consensus 34 ~~~~~~l~~yl~~~lg~---s~----~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~-~~~~~~~l~~~~~ 105 (548)
..++.+.|+|+++..+- ++ +-.+...++..+..++..|+-|.++|+. |+||...-.+. +-++....+...+
T Consensus 32 ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~ 110 (438)
T COG2270 32 IVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIP 110 (438)
T ss_pred eeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhC
Confidence 34667899999987665 44 3445567788888889999999999996 88876654433 3444444444433
Q ss_pred ccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHH
Q 008934 106 ILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSAS 185 (548)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 185 (548)
. ..+++..++..++..++.........++..|..++++. ++..+.-+....+|
T Consensus 111 ---~-----------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~-------~riS~lg~~~gylg 163 (438)
T COG2270 111 ---P-----------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNM-------GRISGLGWALGYLG 163 (438)
T ss_pred ---C-----------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCcccc-------Cccccccccccccc
Confidence 1 13566677778888999999999999999999998663 33333333344455
Q ss_pred HHHHHHHH--HH-hh---------------hccCchhhhHHHHHHHHHHHHHHHhcCCceecc-CCCCCCchhHHHHHHH
Q 008934 186 SIVAVTCI--VY-IQ---------------DNLGWKVGFGVPAVIMLLSALSFFLASPFYVKS-KANTSLLPGLTQVLVA 246 (548)
Q Consensus 186 ~~~gp~i~--~~-l~---------------~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 246 (548)
+.+.-+.. +. .. +...-|..+.++++-.++..+=++...++..+. .+..+.+..-.+-+..
T Consensus 164 s~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~ 243 (438)
T COG2270 164 SVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKS 243 (438)
T ss_pred chHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHH
Confidence 54433332 11 11 112235555555553333333222222221111 1111222222222222
Q ss_pred HHhhccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhcc
Q 008934 247 SFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMD 326 (548)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (548)
.+|+.+.+ .+...++-...+ ..+.+.....+ .....
T Consensus 244 t~k~i~~~---------------------~~i~~FLiA~~~---------------------~~DGv~til~~--~~~fg 279 (438)
T COG2270 244 TFKEIRGR---------------------KNLVLFLIARFF---------------------YIDGVNTILAM--GGVFG 279 (438)
T ss_pred HHHHHhcc---------------------cchHHHHHHHHH---------------------HHhhHHHHHHH--HHHHH
Confidence 23321110 011122211110 01112222211 11111
Q ss_pred CCCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008934 327 RHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAIN 406 (548)
Q Consensus 327 ~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~ 406 (548)
.. .+++. +.+.+...+..-++...-.-..+++.+| ++.++.+.+++++..+..+...+.+
T Consensus 280 ~~---~~gls-----~~~lll~g~~~~vvA~lg~ii~g~Ld~r---fg~k~vl~~~lvi~~~~~~~~~~~~--------- 339 (438)
T COG2270 280 AA---DLGLS-----STELLLIGIALSVVAALGAIIAGFLDER---FGSKPVLMIGLVILSIAALYLIFLE--------- 339 (438)
T ss_pred HH---HcCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCceeehHHHHHHHHHHHHHHHcc---------
Confidence 10 01122 2222222222222222222233444445 6666777777777665555444443
Q ss_pred cCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 008934 407 EGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKR 486 (548)
Q Consensus 407 ~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~ 486 (548)
....+...-.+.|...+-....-=++..+.+|+++.|...|++++....++.+||.+.+.+.++++.
T Consensus 340 -------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~ 406 (438)
T COG2270 340 -------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS 406 (438)
T ss_pred -------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 1222333446677777777777778889999999999999999999999999999999999887752
Q ss_pred CCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 008934 487 GGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLAC 523 (548)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~ 523 (548)
...-+..+.++.++++++.+..
T Consensus 407 ---------------~r~g~~~i~vll~iGl~~L~~v 428 (438)
T COG2270 407 ---------------SRAGVLSIIVLLLIGLLLLLRV 428 (438)
T ss_pred ---------------hhhHHHHHHHHHHhhHhhEEee
Confidence 1233556666777776655443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.5e-11 Score=127.27 Aligned_cols=150 Identities=12% Similarity=0.104 Sum_probs=114.8
Q ss_pred hhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 008934 35 GFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPA 114 (548)
Q Consensus 35 ~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 114 (548)
....++|.|+++++|+++.+++++.+...++..++.+++|+++||+ |||+++..+.++..++.++.....
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~--------- 362 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIG--------- 362 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhcc---------
Confidence 4567899999999999999999999999999999999999999996 999998887766555444333211
Q ss_pred cccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008934 115 CDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194 (548)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~ 194 (548)
..+.+......++.+....+..+..++++.|.+|++ +|++++++.+...++|+.+||.++|
T Consensus 363 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~g~~lgp~l~g 423 (496)
T PRK03893 363 ------------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTE-------QRAAGLGFTYNVGALGGALAPILGA 423 (496)
T ss_pred ------------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHH-------HhhcccchhhhhhhHHHHHHHHHHH
Confidence 112333333344433333334566778889999874 4899999999999999999999999
Q ss_pred HhhhccCchhhhHHHHHHH
Q 008934 195 YIQDNLGWKVGFGVPAVIM 213 (548)
Q Consensus 195 ~l~~~~g~~~~f~i~~~~~ 213 (548)
++.+++||+..+...+...
T Consensus 424 ~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 424 LIAQRLDLGTALASLSFSL 442 (496)
T ss_pred HHhccCChHHHHHHHHHHH
Confidence 9999999988876555433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=121.07 Aligned_cols=175 Identities=17% Similarity=0.065 Sum_probs=128.8
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchH--HHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYR--MIGFGCFTC 94 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~--~~~~~~~~~ 94 (548)
|.++......++.....+.+..+++.|+++++|.++.+++++.....++..++.+++|+++||+ |||+ ..... ...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~-~~~ 292 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFAR-KTA 292 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHH-HHH
Confidence 4566677778888888899999999999999999999999999999999999999999999996 9986 22111 111
Q ss_pred HHH---HHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhh
Q 008934 95 LLG---MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (548)
Q Consensus 95 ~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 171 (548)
.++ ..+..... .. ..+.+.......+.+.+.+ ..+...++.+|.+|+++ |
T Consensus 293 ~~~~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~ 345 (399)
T TIGR00893 293 IIAGLVLSLLMFAT--NY-----------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI-------A 345 (399)
T ss_pred HHHHHHHHHHHHHh--cc-----------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH-------H
Confidence 111 11111111 00 0022233333333334444 68899999999999844 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccC-chhhhHHHHHHHHHHHHHH
Q 008934 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSF 220 (548)
Q Consensus 172 ~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~ 220 (548)
++++++.+...++|..++|.+.|++.+..| |+..|.+.++..+++.+..
T Consensus 346 g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 346 GLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888 9999988877766665544
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6e-11 Score=120.64 Aligned_cols=180 Identities=18% Similarity=0.175 Sum_probs=142.0
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHH-HHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYV-GRYRMIGFG-CFTC 94 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~-Grk~~~~~~-~~~~ 94 (548)
|.+|.+.+..++--+.=|++..+.|.|+.++.|+|..++++..+.+=++...++++.||++||++ |||....+. ++..
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 77888888888888899999999999999999999999999999999999999999999999987 777655443 3344
Q ss_pred HHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHH
Q 008934 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (548)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (548)
+++.+++..++ +.+.++..+..+++|.-.-+-.-..-....|..|.+ .-+++
T Consensus 332 ~~~~~~~w~~~---------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~-------AaGtA 383 (448)
T COG2271 332 TASLVLYWLAP---------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKK-------AAGTA 383 (448)
T ss_pred HHHHHHHHcCC---------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHh-------hccch
Confidence 44445554433 225677777777777665554545556667888874 47889
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcC
Q 008934 175 FSWYYVFVSA-SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLAS 224 (548)
Q Consensus 175 ~~~~~~~~~i-g~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~ 224 (548)
.|....+..+ |.+.+....|++.|.+||...|++..+..+++.+.+....
T Consensus 384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 384 TGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred hchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9998888887 8888888899999999999999987777666666554433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-10 Score=122.02 Aligned_cols=185 Identities=18% Similarity=0.169 Sum_probs=152.5
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccch--HHHHHHHHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRY--RMIGFGCFT 93 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk--~~~~~~~~~ 93 (548)
.|.+..-++..++.+-+...+..+...|.++++|++..+...+..+..+...++.+++|++.||+ |.| +++++++++
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL 358 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence 57777778888999999999999999999999999999999999999999999999999999995 999 899888887
Q ss_pred HHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHH
Q 008934 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (548)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (548)
+.+..+.-.+.- .+.. .+..+.+.+.+.-.+.|+..|..++...++.++..|+++ .+.
T Consensus 359 ~~~i~~~g~~G~-~~~~--------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~-------e~e 416 (477)
T PF11700_consen 359 WIIIPLYGLFGF-WPSF--------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR-------EAE 416 (477)
T ss_pred HHHHHHHHHHHh-hhcc--------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch-------hhH
Confidence 644333222211 1110 011256677777888999999999999999999999965 689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccC-chhhhHHHHHHHHHHHHHHHhc
Q 008934 174 YFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFLA 223 (548)
Q Consensus 174 ~~~~~~~~~~ig~~~gp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~~ 223 (548)
.|+++....-..+.+||.+.|.+.+..| .|.++....+..+++++++...
T Consensus 417 fFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 417 FFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999998876 8888887777777777666443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-10 Score=119.55 Aligned_cols=176 Identities=13% Similarity=0.054 Sum_probs=129.1
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHH-HHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIG-FGCFTCL 95 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~-~~~~~~~ 95 (548)
|.++......++....+++...++|.|++ ++|+++.+++.+.....++..++.++.|+++||+ |||+.+. .+.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~ 299 (402)
T TIGR00897 222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG 299 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence 34455566677788888999999999975 6999999999999999999999999999999996 9988764 3333333
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
++...+....... ..+.+...+..++.|++.+...+ ..+...+..|+ + |++++
T Consensus 300 ~~~~~l~~~~~~~------------------~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~-~-------~g~~~ 352 (402)
T TIGR00897 300 IFTLALYYIPQHF------------------GHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAPK-H-------KGAAM 352 (402)
T ss_pred HHHHHHHHHHHcc------------------CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCcc-h-------hHHHH
Confidence 3322222211000 01345566667777887777544 34555554432 3 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHH
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~ 221 (548)
++.+...++|..++|.+.+++.+.+||...|++.+++.+++.+...
T Consensus 353 g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 353 SVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877666555443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-10 Score=121.75 Aligned_cols=179 Identities=11% Similarity=0.066 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHH-HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 008934 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIF-IWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~-~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (548)
.+..+...++...+.+....+.+.|+.+++|+++.+.+++.. ...++..++.+++|+++||+ |+||.+.++.++..+.
T Consensus 224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~ 302 (491)
T PRK11010 224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVS 302 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 344444445566666677778899998899999999999974 55679999999999999996 9999888776655554
Q ss_pred HHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHH
Q 008934 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (548)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (548)
...+......+ .+.+.+....++..++.|...++..++..+..+++. +++.+++
T Consensus 303 ~l~~~~l~~~~-------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~-------~~t~~gl 356 (491)
T PRK11010 303 NAGYWLLSITD-------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF-------SATQFAL 356 (491)
T ss_pred HHHHHHHHhcc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-------cHHHHHH
Confidence 43332211000 133344445556555666666777888888888754 6788999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcC
Q 008934 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLAS 224 (548)
Q Consensus 178 ~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~ 224 (548)
.+...++|..+++.+.|++.+.+||+..|.+.+++.+++++.....+
T Consensus 357 ~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 357 LSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99889999999999999999999999999988888877766665543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-10 Score=122.75 Aligned_cols=158 Identities=14% Similarity=0.036 Sum_probs=127.3
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.+...+...++...++.....+.|.|++..+|.++.+++++.....++..++.++.|+++||+ |||+++..+..+..+
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 339 (471)
T PRK10504 261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL 339 (471)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4566666677777787777777889999888999999999999988888888999999999996 999999988887777
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+..++.... . ..+.+.+.+..++.|++.+...+..+.+..+.+|+++ ++.+++
T Consensus 340 ~~~~~~~~~---~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~ 392 (471)
T PRK10504 340 VSLLFMLVA---L-----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL-------ASSGNS 392 (471)
T ss_pred HHHHHHhcc---c-----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh-------ccchHH
Confidence 666555422 0 1133344455677788888888889999999998844 799999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCc
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLGW 202 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g~ 202 (548)
+.+....+|..+|+.++|.+.+..|+
T Consensus 393 ~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 393 LLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999998876665
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-10 Score=121.55 Aligned_cols=151 Identities=11% Similarity=-0.002 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-HHHH
Q 008934 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV-LLWS 103 (548)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~-l~~~ 103 (548)
..++....++++..++|.|+++.+|+++.++++......++..++.+++|+++||+ ||||++..+.....+... ....
T Consensus 246 ~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~ 324 (434)
T PRK15075 246 MVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPALSW 324 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888899999999999999999999999889999999999999999996 999998876554332221 1111
Q ss_pred hcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHH
Q 008934 104 TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVS 183 (548)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 183 (548)
.. . ..+.........+.+++.+...+....+..|.+|++. |++++++.+...+
T Consensus 325 ~~--~------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~-------rg~~~g~~~~~~~ 377 (434)
T PRK15075 325 LV--A------------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV-------RTAGFSLAYSLAT 377 (434)
T ss_pred HH--c------------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc-------cchheeHHHHHHH
Confidence 11 0 0122233333445566666666677788899999855 7888888665554
Q ss_pred -HHHHHHHHHHHHhhhccCch
Q 008934 184 -ASSIVAVTCIVYIQDNLGWK 203 (548)
Q Consensus 184 -ig~~~gp~i~~~l~~~~g~~ 203 (548)
+++.++|.+.+++.++.|++
T Consensus 378 ~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 378 AIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHhhhHHHHHHHHHHhcCCc
Confidence 46788999999999988853
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.2e-10 Score=113.49 Aligned_cols=177 Identities=14% Similarity=0.030 Sum_probs=146.7
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
+.++..+...++...+.|...+++.+|+++..|+|....+++...+.++..++..++|+++|| +.|+.+.....+..+
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~ 288 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL 288 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence 567888889999999999999999999999999999999999999999999999999999998 888998888888777
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
....+.+.. .+.+..++..++.|+..+........-.++..|++ ++.+.+
T Consensus 289 ~~l~l~~~~----------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~--------~~~a~s 338 (394)
T COG2814 289 ALLALTFTG----------------------ASPALALALLFLWGFAFSPALQGLQTRLARLAPDA--------ADLAGS 338 (394)
T ss_pred HHHHHHHhc----------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCc--------hHHHHH
Confidence 777766544 14455555566667766665555555556533332 688999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCC
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 225 (548)
++....|+|..+|..++|.+.+++|+....++.++..++++.+.+...+
T Consensus 339 l~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 339 LNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988888777665444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-10 Score=122.26 Aligned_cols=173 Identities=11% Similarity=0.048 Sum_probs=135.4
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHH--HH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY-VGRYRMIGFGC--FT 93 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~-~Grk~~~~~~~--~~ 93 (548)
|.++..+...++..++++....+++.|++ ++|+++.+++++.++..++..++.+++|+++||+ .++|+...++. +.
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 319 (455)
T TIGR00892 241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF 319 (455)
T ss_pred chHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence 44556666677777888888899999986 5899999999999999999999999999999973 13444443333 22
Q ss_pred HHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHH
Q 008934 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (548)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (548)
..++.+++.... +.+.+++.+++.|++.+...++..+++.|.+|+++ +++
T Consensus 320 ~~l~~ll~~~~~-----------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~-------~g~ 369 (455)
T TIGR00892 320 NGLTHLLCALAG-----------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR-------FSS 369 (455)
T ss_pred HHHHHHHHHHhc-----------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH-------Hhh
Confidence 233333333332 56677788899999999999999999999998844 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhhhHHHHHHHHHHHHHH
Q 008934 174 YFSWYYVFVSASSIVAVTCIVYIQDNL-GWKVGFGVPAVIMLLSALSF 220 (548)
Q Consensus 174 ~~~~~~~~~~ig~~~gp~i~~~l~~~~-g~~~~f~i~~~~~~i~~~~~ 220 (548)
.+++++...++|..+||.++|++.+.. +|+..|++.+++.+++.+..
T Consensus 370 ~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 370 AVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL 417 (455)
T ss_pred HHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999877 59999998887766655533
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.3e-10 Score=117.79 Aligned_cols=173 Identities=12% Similarity=-0.016 Sum_probs=120.9
Q ss_pred HHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCC
Q 008934 31 MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGA 110 (548)
Q Consensus 31 ~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~ 110 (548)
.....+..+.+.+ .+++|++..++++......++..++.+++|+++||+ |||+.+.+++++..++..++.+......
T Consensus 298 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 374 (481)
T TIGR00879 298 TGINAIMYYSPTI-FENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV- 374 (481)
T ss_pred hCCeehHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc-
Confidence 3333444445544 567899999999999999999999999999999996 9999999998887777766653210000
Q ss_pred CCCCcccccCCCcCCCccchHHHHHHHHHHHHhcc-ccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHH
Q 008934 111 KPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSG-GIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVA 189 (548)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g 189 (548)
...+.......+....+.+.+.+ ...+....+..|.+|++ .|++++++.+...++|++++
T Consensus 375 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~~~~~~~~~lg~~i~ 435 (481)
T TIGR00879 375 ------------TGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLS-------LRPKGISIAVAANWLANFIV 435 (481)
T ss_pred ------------CCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChH-------HHHHHHHHHHHHHHHHHHHH
Confidence 00000002222222222222222 23466677779999984 48999999999999999999
Q ss_pred HHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCC
Q 008934 190 VTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (548)
Q Consensus 190 p~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 225 (548)
|.+.+++.++.+|+..|++.+++.+++.+..+...+
T Consensus 436 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 436 GFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHHHHHHHhcCccceehhHHHHHHHHHHHHheecc
Confidence 999999999889999999888777766665544433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-10 Score=115.22 Aligned_cols=186 Identities=13% Similarity=0.057 Sum_probs=150.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
.|.+|++....+...-++.++..++|.|+++++|.++.++|.+...+.+...+..++||+|+||+ |.+|+.++....++
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999996 99999999998888
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
++..+..... +. .....+.+........+++..|.-...+..++...+|++ -+.+.
T Consensus 296 ~~~~~l~~~~--~~--------------~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~--------~G~v~ 351 (417)
T COG2223 296 LAAALLSLFL--TG--------------FGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE--------TGAVT 351 (417)
T ss_pred HHHHHHHccc--cc--------------cccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh--------hhHHH
Confidence 8887777543 10 000123445555455566666666667777888778763 57888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC-chhhhHHHHHHHHHHHHHHHhcCCc
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFLASPF 226 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~~~~~ 226 (548)
++.....++|+..-|...+...+..| +...|++.....+++.++.+....+
T Consensus 352 G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 352 GIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89888999999999999999888887 9999999888888777766554443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-09 Score=116.03 Aligned_cols=167 Identities=17% Similarity=0.024 Sum_probs=110.5
Q ss_pred HHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH-hc
Q 008934 27 AFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWS-TT 105 (548)
Q Consensus 27 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~-~~ 105 (548)
++....+|++..++|.|+++++|++..+++...++..+...++.++.|+++||+ |||+++.++.++..+....... ..
T Consensus 253 ~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~ 331 (432)
T PRK10406 253 AAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSALQ 331 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344778899999999999999999999999988888888889999999999995 9999887766544333221211 11
Q ss_pred ccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHH-
Q 008934 106 ILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSA- 184 (548)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i- 184 (548)
. ..+....+....+...+.+...+....+.+|.+|++. |++++++.+...++
T Consensus 332 ---~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~-------r~t~~g~~~~~g~~~ 384 (432)
T PRK10406 332 ---N-----------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV-------RALGVGLSYAVANAL 384 (432)
T ss_pred ---c-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc-------cchhhhHHHHHHHHH
Confidence 0 0012222211222222333334556788899999854 89999998876654
Q ss_pred HHHHHHHHHHHhhhccC-chhhhHHHHHHHHHHHHHHHh
Q 008934 185 SSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 185 g~~~gp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~ 222 (548)
++...|.+.+++. ..| |...++..++..+++.+..++
T Consensus 385 ~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 385 FGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4555888777664 445 555666555555555544443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-09 Score=108.28 Aligned_cols=135 Identities=10% Similarity=-0.004 Sum_probs=108.1
Q ss_pred HHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCccc
Q 008934 38 PNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQ 117 (548)
Q Consensus 38 ~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 117 (548)
....+|.++-+| +...+-|...+|.+.+....+.+-|+.||+ |-|-..+++..+..+|..+=.++. .|..
T Consensus 65 a~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss-~p~v------- 134 (480)
T KOG2563|consen 65 APINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISS-LPFV------- 134 (480)
T ss_pred hhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhcc-Cccc-------
Confidence 456778888888 888888999999999999999999999996 999999999999999988877765 3421
Q ss_pred ccCCCcCCCccchH--HHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008934 118 LRNGCESATWSQLM--PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY 195 (548)
Q Consensus 118 ~~~~~~~~~~~~~~--~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~ 195 (548)
+..++ ..+.+..+.+...-.+...-.-+.+-+|++++ |+.+-..-..++.+|.++|..+...
T Consensus 135 ---------~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q-------ra~A~~~~v~~n~LGvavg~llppi 198 (480)
T KOG2563|consen 135 ---------PPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ-------RAIATVLGVMGNPLGVAVGFLLPPI 198 (480)
T ss_pred ---------cccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch-------hhhhhhHHHhcchHHHHHHhhccce
Confidence 01344 67788888888887777777788899999955 7888877777777888877777666
Q ss_pred hhh
Q 008934 196 IQD 198 (548)
Q Consensus 196 l~~ 198 (548)
+..
T Consensus 199 lV~ 201 (480)
T KOG2563|consen 199 LVP 201 (480)
T ss_pred ecC
Confidence 654
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.3e-10 Score=113.28 Aligned_cols=155 Identities=11% Similarity=0.065 Sum_probs=128.5
Q ss_pred chHHHHHHHHHHHHHHHHhhH-HHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFT-PNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
|.++......++....+++.. .+.|.|+++.+|.++.+.+.+.....++..++.++.|++.||+ |||+.+..+..+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 288 (365)
T TIGR00900 210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG 288 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence 445555556666666776666 7788888878999999999999999999999999999999996 99999988877766
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
++..+..... + +.+.+.+..++.|++.+...+...+++.|.+|+ +.|++++
T Consensus 289 ~~~~~~~~~~---------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~ 339 (365)
T TIGR00900 289 LAILVVGLTP---------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA-------ELLGRVF 339 (365)
T ss_pred HHHHHHHhhc---------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHH
Confidence 6666655433 1 256677788899999999999999999999998 4499999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLG 201 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g 201 (548)
++.+...++|..++|.++|++.|.+|
T Consensus 340 ~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 340 GAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999988654
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-10 Score=109.89 Aligned_cols=372 Identities=12% Similarity=0.110 Sum_probs=214.6
Q ss_pred hHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCc
Q 008934 36 FTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPAC 115 (548)
Q Consensus 36 ~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 115 (548)
--.-+.++.+++.+++.++..++.+++++-..+.+.++|++.||.+|-|..-++-+....+|.+.++... +
T Consensus 62 ~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg-i-------- 132 (459)
T KOG4686|consen 62 APGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG-I-------- 132 (459)
T ss_pred CchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch-H--------
Confidence 3345677778888899999999999999999999999999999988887654444444456666555322 0
Q ss_pred ccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008934 116 DQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY 195 (548)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~ 195 (548)
...+|....+|++.|+|.-....+.+.++..+|..+ +.+.++++......+|+..-..+-++
T Consensus 133 -----------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGK-------ELn~vfGlqlSvAR~GstvNf~lm~~ 194 (459)
T KOG4686|consen 133 -----------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGK-------ELNFVFGLQLSVARLGSTVNFLLMPF 194 (459)
T ss_pred -----------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCc-------cccchhhHHHHHHHhhceeeeeecHH
Confidence 116788999999999999888888899999999874 48999999999999999888888888
Q ss_pred hhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccCCCCCcchhhhhhcCCCC--c--
Q 008934 196 IQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGS--M-- 271 (548)
Q Consensus 196 l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-- 271 (548)
+.++.+--.+ ...-..+++.+++-. ....+.+..+...... +++.|+..+.++.. +
T Consensus 195 ly~~~~~~~~---~~ghT~LG~~l~~~~--------------~tc~~slical~lg~~---D~rAerilh~e~g~~Ge~p 254 (459)
T KOG4686|consen 195 LYDTMGRMFP---GVGHTLLGLWLCFEV--------------KTCKQSLICALSLGLS---DDRAERILHLEEGFLGEEP 254 (459)
T ss_pred HHHHHHHhcc---cchHHHHHHHHHHHH--------------HHHHHHHHHHHHhhhh---hhHHHHHHhhhcCcccCCc
Confidence 8776541111 111111111111000 0000000111111000 00223333332210 0
Q ss_pred ccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCC-CccchH--HHHHHHHHHHHHhhccCCCC-CCceecCcccchhhHHH
Q 008934 272 RLMPSENLRFLNKACMAKHPEQDLTPDGRASNP-NSLCTV--EQVEELKALIKASSMDRHVT-PNFEIPSGSFNIFAILT 347 (548)
Q Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~lg-~~~~i~~~~~~~~~~~~ 347 (548)
++...+ ....| |.+... .-.-.+...+. +...+. ..|++++..-.++++..
T Consensus 255 kLtdv~----------------------~f~ppfw~~~iicv~yyva~fPFi~---lg~~fF~~rfGlS~~~a~~i~s~v 309 (459)
T KOG4686|consen 255 KLTDVN----------------------TFYPPFWVLVIICVLYYVAWFPFIT---LGPMFFQKRFGLSAVSAGNILSTV 309 (459)
T ss_pred cccccc----------------------ccCccHHHHHHHHHHHHHHHHHHhh---hhHHHHHHhhCCChhhccchhhhh
Confidence 000000 01122 221110 00000000000 000000 13446666666666655
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHH
Q 008934 348 LTIWIGLYDRAVLPLASKIKGKPCQLSL-KLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLP 426 (548)
Q Consensus 348 ii~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~ 426 (548)
=.+..+ ..|+.+.+.+| .+. .+++..+.+...++=..+.+.. .+. -.
T Consensus 310 y~Isav-----~spvfg~i~Dk---~G~n~~wv~~a~~~tl~~H~~l~Ft~---------------------lsP---y~ 357 (459)
T KOG4686|consen 310 YGISAV-----LSPVFGAISDK---YGFNLWWVASACILTLLGHSGLFFTF---------------------LSP---YT 357 (459)
T ss_pred hhhhhh-----hhhhHHHhHhh---hcceehhHHHHHHHHHHHhhhHHhhh---------------------ccH---HH
Confidence 443333 44555555554 332 2334444444444333333321 122 23
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHH
Q 008934 427 YLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYY 506 (548)
Q Consensus 427 ~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f 506 (548)
++.+.|+...+.....+-.+...+|+++-|++-|+.+..+++|-++-|.+.+.+.+-.+ +. ...+.+|
T Consensus 358 ~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g-----~y-------~~le~ff 425 (459)
T KOG4686|consen 358 SMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG-----SY-------DNLEAFF 425 (459)
T ss_pred HHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC-----ch-------hhHHHHH
Confidence 66788999999999899999999999999999999999999999999999998764211 11 1245566
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008934 507 WLLTALSMANFLYYLAC 523 (548)
Q Consensus 507 ~~~~~~~~v~~~~~~~~ 523 (548)
...+.+++.+..+.+..
T Consensus 426 l~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 426 LIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHHHHHHHHHhhe
Confidence 66666666665554443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.6e-10 Score=118.60 Aligned_cols=177 Identities=15% Similarity=0.117 Sum_probs=120.3
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 008934 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (548)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (548)
.++......++.....+++..++|.|+++..|+++.+++++...+.+...++.+++|+++||+ |+++....+..+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~ 330 (438)
T TIGR00712 252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV 330 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence 345555566666777789999999999999999999999999999999999999999999995 7554333333222221
Q ss_pred ---HHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHH
Q 008934 98 ---MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (548)
Q Consensus 98 ---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (548)
...+.... ..+.+...+..+..|.+..+..........|.+|++ .|+++
T Consensus 331 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~g~~ 382 (438)
T TIGR00712 331 TIAVIVYWMNP---------------------AGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKK-------AAGTA 382 (438)
T ss_pred HHHHHHHHhcC---------------------CCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChh-------heeee
Confidence 11111110 012233333334444433222222234567888874 48999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhc
Q 008934 175 FSWYYVFVSASS-IVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLA 223 (548)
Q Consensus 175 ~~~~~~~~~ig~-~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~ 223 (548)
.++.+...++|+ +++|.+.|++.++.||...|++.++..+++.+..++.
T Consensus 383 ~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T TIGR00712 383 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 432 (438)
T ss_pred hhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 999988888875 6899999999999999999988777666665555443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-09 Score=113.14 Aligned_cols=174 Identities=13% Similarity=0.091 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Q 008934 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (548)
.+..+...++.....+....+++.|+.+.+|+++.+++.+.+...++..++.++.|+++||+ |+|+.+..+..+..++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~ 279 (382)
T PRK10091 201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL 279 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence 34444444444555555666778898888999999999999999999999999999999996 99999998888777776
Q ss_pred HHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHH
Q 008934 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (548)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (548)
.+..... + +.+...+..++.+.|.....+.......+..++++ .++.+ ..
T Consensus 280 ~~~~~~~---------------------~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~--~~ 329 (382)
T PRK10091 280 LMLFFFG---------------------G-MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGE------LLGAA--GG 329 (382)
T ss_pred HHHHHHH---------------------h-hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcch------HHHHH--HH
Confidence 5554322 0 23344444555556555444444433333333221 13433 33
Q ss_pred HHHHHHHHHHHHHHHHHhhhc-cCchhhhHHHHHHHHHHHHHHHhc
Q 008934 179 YVFVSASSIVAVTCIVYIQDN-LGWKVGFGVPAVIMLLSALSFFLA 223 (548)
Q Consensus 179 ~~~~~ig~~~gp~i~~~l~~~-~g~~~~f~i~~~~~~i~~~~~~~~ 223 (548)
+...++|..+||.++|++.|. .+|+..+.+.++..++.+......
T Consensus 330 ~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 330 QIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 556789999999999999985 689999998877666555544433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-08 Score=105.71 Aligned_cols=162 Identities=15% Similarity=0.088 Sum_probs=116.8
Q ss_pred HHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhcc--c--cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 008934 39 NMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY--V--GRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPA 114 (548)
Q Consensus 39 ~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~--~--Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 114 (548)
-...|+++++|+++++...+.+..++-..+ -++.|.++|.+ . .||.-+.++.++..++...+...+ .
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~---~----- 81 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP---A----- 81 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc---c-----
Confidence 345578999999999988777666555544 57788999986 2 345555666666655555454432 1
Q ss_pred cccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008934 115 CDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194 (548)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~ 194 (548)
...+.....+..++..+|....-...-+++.|...++.. .|+...++.+....+|++++..++|
T Consensus 82 -----------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~-----~~g~lqS~~~~~~~~G~lv~~~l~G 145 (433)
T PF03092_consen 82 -----------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE-----SRGDLQSFVWGVRSVGSLVGSLLSG 145 (433)
T ss_pred -----------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc-----hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 011334455566778899999888999999999876553 3788899999999999999999999
Q ss_pred HhhhccCchhhhHHHHHHHHHHHHHHHhcCC
Q 008934 195 YIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (548)
Q Consensus 195 ~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 225 (548)
.+.+..+++..|.+.+....+..+..+...+
T Consensus 146 ~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 146 PLLDSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred hhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 9999999999999887766655444444333
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-09 Score=112.64 Aligned_cols=176 Identities=16% Similarity=0.042 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHH-HHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTA-ATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~-~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
..+..+...++...+......+.+.|+.+ +|+++++.|++...... ...++.+++|++.||+ |+||++.++..+..+
T Consensus 209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 286 (390)
T TIGR02718 209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGS 286 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 34555556667777777777888899875 79999999999887764 5667789999999996 999999887766533
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
............. ..+...+.....+.+++.|...+...+...+..++++ .+++.++
T Consensus 287 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------~~g~~~~ 343 (390)
T TIGR02718 287 LALLWFAQAAFWL-----------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGD------QAGTDVT 343 (390)
T ss_pred HHHHHHHHHHccc-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc------chHHHHH
Confidence 3222221110000 0022333444455566777777788888777776522 2799999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHH
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~ 218 (548)
..+...++|..+||.++|++.+..||+..|.+.+++.+++.+
T Consensus 344 ~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 344 AVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887776665543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-09 Score=112.39 Aligned_cols=168 Identities=12% Similarity=0.032 Sum_probs=130.6
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.++..+...++....+.....+++.|+. +.|+++.+.|.+.+...+...+..++.|++.||+ |+|+.+.++.+...+
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~ 282 (382)
T PRK11128 205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV 282 (382)
T ss_pred hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence 44555555566666777777788899985 6899999999999988888899999999999996 999999999888888
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+..++...+ +.+.+++..++.|++.+...+....++.+. +++ +++++++
T Consensus 283 ~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~ 331 (382)
T PRK11128 283 RWGLMGSTT-----------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGS-------EVIRLQA 331 (382)
T ss_pred HHHHHHhhh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHh-------hhHHHHH
Confidence 776665543 667778888999999998888888887775 442 2577788
Q ss_pred HHH-HHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHH
Q 008934 177 WYY-VFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218 (548)
Q Consensus 177 ~~~-~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~ 218 (548)
.+. ....+|..+||.++|++.|.+|+ ..|+..+++.+++++
T Consensus 332 ~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 332 LYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 775 44577889999999999999887 456655555544443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.2e-10 Score=119.80 Aligned_cols=154 Identities=12% Similarity=0.001 Sum_probs=129.0
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.+.......++..+.+++...++|.|+++.+|+|+.++|.......++..++.+++|++.||+ |+|+.+..+.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~ 337 (495)
T PRK14995 259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL 337 (495)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4555666677777788888889999999999999999999999999999999999999999996 999999888888877
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+..++.... . ..+.+...+..++.|+|.|...+.....+.+..|+++ ++.+.+
T Consensus 338 ~~~~l~~~~-~-------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~-------~g~~~~ 390 (495)
T PRK14995 338 SFYGLAMTD-F-------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK-------AAAAGA 390 (495)
T ss_pred HHHHHHHhc-C-------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh-------cchHHH
Confidence 776655422 0 1134455667788999999998888888899888844 789999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 008934 177 WYYVFVSASSIVAVTCIVYIQD 198 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~ 198 (548)
+++...++|+.+|+.+.+.+.+
T Consensus 391 ~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 391 IETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998865
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-09 Score=110.90 Aligned_cols=172 Identities=10% Similarity=-0.069 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 008934 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (548)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (548)
.++.......+.....+......|.|+.+++|+++.+.++......++..++.++.|+++||+ |+||.+.++.++..++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g 294 (406)
T PRK15402 216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG 294 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 344444444455555666667788999999999999999988888888889999999999996 9999999988887777
Q ss_pred HHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHH
Q 008934 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (548)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (548)
..+........ ..+.+.+.++.++.++|.+...+......... ++++ |+++.+.
T Consensus 295 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~-------~g~~~~~ 348 (406)
T PRK15402 295 LLLAALATVIS------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS-------KGTVSAA 348 (406)
T ss_pred HHHHHHHHHcc------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc-------ccHHHHH
Confidence 77666532000 11455667778889999988777766655433 3322 7999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHH
Q 008934 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 216 (548)
Q Consensus 178 ~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~ 216 (548)
.+....+|..+|+.+.+++.+..++.......++..++.
T Consensus 349 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 349 MGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 999999999999999999988777665444444433333
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.1e-10 Score=119.04 Aligned_cols=163 Identities=15% Similarity=0.103 Sum_probs=126.8
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.++..+...++...+++....+.+.|++..+| ++.+.+++.....++..++.++.|+++||+ |||+++.++.++..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 455666667777777777766666777766666 566777888888999999999999999996 999999999888877
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+.++..+.. .+.+...+..++.+++.+...+...++++|..|.++.+..++.++.+++
T Consensus 300 ~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 357 (437)
T TIGR00792 300 GYLIFFFAG----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYS 357 (437)
T ss_pred HHHHHHHcc----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHH
Confidence 776665422 1345566667788899999999999999999875432211144789999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCch
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLGWK 203 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g~~ 203 (548)
+.+....+|..+++.+.|++.+..||.
T Consensus 358 ~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 358 VRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999998877764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-09 Score=110.51 Aligned_cols=174 Identities=14% Similarity=0.163 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHH-HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 008934 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWT-AATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~-~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (548)
++..+...++...+......+.+.|+.+++|+++.+.+++..... ++..++.+++|++.||+ ||||.+.++.++..+.
T Consensus 211 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~ 289 (402)
T PRK11902 211 AWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVS 289 (402)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 333344444444433333345566788889999999999886654 45788999999999996 9999988777766555
Q ss_pred HHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHH----HHHHhccccccchhhhhhccCCCCCCCccchhhHH
Q 008934 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFG----LMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (548)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (548)
.+.+......+. +.+.+..... ..+++.+...+....++.+.+|. +
T Consensus 290 ~l~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------~ 339 (402)
T PRK11902 290 NLGYWVLAVTPK-------------------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSA-----------T 339 (402)
T ss_pred HHHHHHHHhcCC-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-----------H
Confidence 443322110111 3344444443 34555666666666777766664 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhc
Q 008934 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLA 223 (548)
Q Consensus 174 ~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~ 223 (548)
.++.+....++|...++.++|++.|+.||+..|.+.+++.++++++....
T Consensus 340 ~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~ 389 (402)
T PRK11902 340 QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLM 389 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 23444445577777667789999999999999999888777766555433
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.4e-08 Score=104.09 Aligned_cols=359 Identities=16% Similarity=0.111 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHhhH---HHHHHHHhHhhcCChhH-HHHHHHHH----HHHHHHHHHHHHHHhhccccchHHHHHHHHH
Q 008934 22 IIANEAFERMATVGFT---PNMILYLCREYNMETTA-ATNIIFIW----TAATNFLPIVGALLADSYVGRYRMIGFGCFT 93 (548)
Q Consensus 22 ~~~~~~~~~~~~~~~~---~~l~~yl~~~lg~s~~~-ag~i~~~~----~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 93 (548)
+....+...++++... .....+.....+.+... .+...... .+...+..++-|.++||| |||..+...++.
T Consensus 23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~ 101 (463)
T KOG2816|consen 23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFG 101 (463)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHH
Confidence 3334555555555544 45555555444433322 22333333 678889999999999997 999999998887
Q ss_pred HHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHH
Q 008934 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (548)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (548)
..+..+...+.. +++.+ ..-..-+.+...+...++++|...++ +|..
T Consensus 102 ~~l~~~~~~~~~-------------------------~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~-------~R~~ 148 (463)
T KOG2816|consen 102 TILPALCLLFQG-------------------------YWFFL-LLGLSGGFSAIFSVGFAYVADISSEE-------ERSS 148 (463)
T ss_pred HHHhHHHHHHHH-------------------------HHHhh-hcccccchhhhhhhhhhheeeccchh-------HHHH
Confidence 777665555422 23333 11122333455677788899998884 4899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCC-CCchhHHHHHHHHHhhcc
Q 008934 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANT-SLLPGLTQVLVASFKNRR 252 (548)
Q Consensus 174 ~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (548)
.+++.+.....+..++|.+++.+.+..|+..+|.++.+..+++.+-.....|+..+++..+ .+..+. ..
T Consensus 149 ~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~----------~~ 218 (463)
T KOG2816|consen 149 SIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLREL----------TP 218 (463)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccccc----------CC
Confidence 9999999899999999999999999999999999999888877776666555543332221 010000 00
Q ss_pred CCCCCcchhhhhhcCCCCcccCCcch-hhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCC
Q 008934 253 TKLPTQATEEMYHHGKGSMRLMPSEN-LRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTP 331 (548)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 331 (548)
-........+.+..... ..+... +......+....++. ++. ... .....+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~---~~~~r~~l~l~l~~~~~~~~~~----~~~----------------~~~-~~~yl~~~f-- 272 (463)
T KOG2816|consen 219 GSLDSSHVADAFQSLTK---VGPDRLLLLLLLVAFLSSLPEA----GGA----------------SDV-LLLYLKAKF-- 272 (463)
T ss_pred Ccccchhhhhhhhhhcc---cCCCccchHHHHHHHHHHHHHh----cCc----------------eeE-EEEEEeeec--
Confidence 00000000001110000 000000 000000000000000 000 000 000111111
Q ss_pred CceecCcc---cchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008934 332 NFEIPSGS---FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEG 408 (548)
Q Consensus 332 ~~~i~~~~---~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~ 408 (548)
+..... +....+....+ .+.+..|...+... ..+.+..|++...++..+.++.+
T Consensus 273 --~w~~~~~s~~~~~~~~~~~i----~~l~~~~~l~~~l~------~~~~i~lGl~~~~~~~~~~af~~----------- 329 (463)
T KOG2816|consen 273 --GWNKKEFSDLLSLVSILGII----SQLLLLPLLSSILG------EKRLISLGLLSEFLQLLLFAFAT----------- 329 (463)
T ss_pred --CcCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh------hhhHhhHHHHHHHHHHHHHHHhc-----------
Confidence 122211 22222222222 22234444444322 22478889999999999999886
Q ss_pred CCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008934 409 ISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITK 485 (548)
Q Consensus 409 ~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~ 485 (548)
..| +...............|...+++...++++.+|.++++......+++.+++.+-+.+...+.
T Consensus 330 -----------~~w-~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 330 -----------ETW-MMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTL 394 (463)
T ss_pred -----------cch-hhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 444 44455566667778899999999999999999999999999999999999999888765553
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-09 Score=116.95 Aligned_cols=156 Identities=13% Similarity=0.061 Sum_probs=129.1
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.++......++..+.+++...++|.|+++.+|+++.+++++.....++..++.++.|++.||+ |||+++.++..+..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~ 333 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV 333 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence 4556666677778888889999999999999999999999999999999999999999999996 999999999888877
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+..+..... .+ +.+.+.+....++.|+|.+...+.......+.+|+ ++|+++.+
T Consensus 334 ~~~~~~~~~-~~------------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~-------~~~g~~~~ 387 (485)
T TIGR00711 334 GFYWRAFTF-TP------------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP-------HKIARGSS 387 (485)
T ss_pred HHHHHhccC-CC------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------HHHhHHHH
Confidence 776665221 01 12445566667889999998887788888888887 44899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDN 199 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~ 199 (548)
+.+...++|+.+|+.+.+.+.++
T Consensus 388 ~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 388 LSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988764
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-09 Score=108.69 Aligned_cols=162 Identities=11% Similarity=0.056 Sum_probs=125.3
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHh--hcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCRE--YNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 94 (548)
|..+......++....-.++..+++.|+.+. +|+++.+++...+.+..+..++.+++++++||+ |+||++.++..+.
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~ 218 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA 218 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence 4455555555555555667788999999854 799999999999999999999999999999996 9999999888877
Q ss_pred HHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHH
Q 008934 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (548)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (548)
+++..+....+ +. ....+..+.|++.+..+|...++..+.+|++. +.+
T Consensus 219 ~~~~~l~~~~~-----------------------~~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~--------~~a 266 (310)
T TIGR01272 219 VLLSIGAALTH-----------------------GY-VAMWFVLALGLFNSIMFPTIFSLALNALGRHT--------SQG 266 (310)
T ss_pred HHHHHHHHHcC-----------------------CH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--------hhh
Confidence 77665554322 11 12335567899999999999999999888743 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHH
Q 008934 175 FSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVI 212 (548)
Q Consensus 175 ~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~ 212 (548)
.++. ....+|++++|.+.|.+.|..|.+.+|++..++
T Consensus 267 sai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 267 SGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3443 567799999999999999999998888765543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=103.68 Aligned_cols=165 Identities=15% Similarity=0.090 Sum_probs=134.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH-
Q 008934 14 GGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF- 92 (548)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~- 92 (548)
.....+|.+..+.++...+.+=+...-+.|.++.+|+|+.+++.+.+.....+.+.+|+.|.++||+ |++-....+..
T Consensus 261 ~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~ 339 (459)
T KOG4686|consen 261 TFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACI 339 (459)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHH
Confidence 3346788888888888888887778889999999999999999999999999999999999999997 99866555444
Q ss_pred HHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhH
Q 008934 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (548)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (548)
....+...+.++. +.-.++..++|+.+.....+.+++++..+|+++ .+
T Consensus 340 ~tl~~H~~l~Ft~-------------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~q-------LG 387 (459)
T KOG4686|consen 340 LTLLGHSGLFFTF-------------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ-------LG 387 (459)
T ss_pred HHHHHhhhHHhhh-------------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH-------hc
Confidence 4444555555533 334667788999999988889999999999955 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccC---chhhhHHHHH
Q 008934 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLG---WKVGFGVPAV 211 (548)
Q Consensus 173 ~~~~~~~~~~~ig~~~gp~i~~~l~~~~g---~~~~f~i~~~ 211 (548)
++++..+...|+|-.+.|++.|.+.|+-| |--+|.+...
T Consensus 388 Taygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~ 429 (459)
T KOG4686|consen 388 TAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIG 429 (459)
T ss_pred chHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence 99999999999999999999999998754 4455554433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.7e-09 Score=112.06 Aligned_cols=146 Identities=14% Similarity=0.094 Sum_probs=106.5
Q ss_pred HHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 008934 32 ATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAK 111 (548)
Q Consensus 32 ~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 111 (548)
..+.+..++|.|+++ .|.++.+.+.+.+...++..++.+++|+++||+ |||+.+..+.++..++..+..... .
T Consensus 246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~---~-- 318 (426)
T PRK12307 246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIP---Q-- 318 (426)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHc---c--
Confidence 334467788989875 699999999999999999999999999999996 999999988877665544443221 0
Q ss_pred CCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 008934 112 PPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT 191 (548)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~ 191 (548)
.....+....+..+.+..+..+..+.++.|.+|++ .|++++++.+...++|+.++|.
T Consensus 319 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~g~~~g~~~~~~~~~~~~gp~ 375 (426)
T PRK12307 319 ----------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLE-------VRGLGTGLIYNLAATSGTFNSM 375 (426)
T ss_pred ----------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHH-------HHhhhhhHHHHHHhHHHHHHHH
Confidence 01121222222222223333455667888999984 4899999999999999999999
Q ss_pred HHHHhhhccCchhhhH
Q 008934 192 CIVYIQDNLGWKVGFG 207 (548)
Q Consensus 192 i~~~l~~~~g~~~~f~ 207 (548)
+.|++.+++|+....+
T Consensus 376 ~~g~l~~~~g~~~~~~ 391 (426)
T PRK12307 376 AATWLGITMGLGAALT 391 (426)
T ss_pred HHHHHHHcccHHHHHH
Confidence 9999999888665433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-09 Score=114.40 Aligned_cols=164 Identities=12% Similarity=-0.017 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhH-hhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHH-HHHHHHHH
Q 008934 18 TLPFIIANEAFERMATVGFTPNMILYLCR-EYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMI-GFGCFTCL 95 (548)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~-~~~~~~~~ 95 (548)
.++......++....++++..++|.|+++ ..|.++.+++.......++..++.+++|+++||+ +||+.. ....++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~ 321 (412)
T TIGR02332 243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA 321 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence 34556667777888899999999999987 3578899999999999999999999999999995 877753 33333333
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
++..+. ... + +......+..+.+.|.....+.......+.+|+ ++|+.++
T Consensus 322 ~~~~~~-~~~--~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~a~ 371 (412)
T TIGR02332 322 AGWLLA-SAT--D--------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISL-------QARAIAI 371 (412)
T ss_pred HHHHHH-Hhc--C--------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccch-------HHHHHHH
Confidence 332221 111 0 111112222223333333233334444566666 4599999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC-chhhhHHHHHH
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVI 212 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g-~~~~f~i~~~~ 212 (548)
++.+...++|++++|.+.|.+.+..| |+..|++.++.
T Consensus 372 g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 372 AVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 99999999999999999999999875 99988876654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.6e-09 Score=115.30 Aligned_cols=173 Identities=10% Similarity=0.035 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccch-----HHHH--HHH
Q 008934 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRY-----RMIG--FGC 91 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk-----~~~~--~~~ 91 (548)
+|.+.+..++.....+.+..++|.|+.+++|+++.+++.+.+...++..++.+++|+++||+ ||| |... ++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~ 332 (476)
T PLN00028 254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ 332 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence 34444444444445566777899999999999999999999999999999999999999995 875 2222 222
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhh
Q 008934 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (548)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 171 (548)
++..+...+..... +.+...+..++.+++.+...+...++..+..| +.|
T Consensus 333 ~l~~i~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~ 381 (476)
T PLN00028 333 TLGGVFCIWLGRAN-----------------------SLGAAIVVMILFSIFVQAACGATFGIVPFVSR--------RSL 381 (476)
T ss_pred HHHHHHHHHhcccc-----------------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh--------hhc
Confidence 12111112221111 33334444455555555545555555555443 237
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcC
Q 008934 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLAS 224 (548)
Q Consensus 172 ~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~ 224 (548)
+...++.+...++|+.++|.+.+ ..+..+|+.+|++.+++.+++.++.++.+
T Consensus 382 g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 382 GVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 88888877777777777776543 22334699999998887777776665543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.5e-09 Score=113.19 Aligned_cols=173 Identities=12% Similarity=0.064 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Q 008934 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (548)
....+...++..+....+...+|.+.++.+|.++...|++.+++.++..++.++.+++.+|+ ++++++..+.+.+.++.
T Consensus 220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~ 298 (524)
T PF05977_consen 220 LRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALAL 298 (524)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHH
Confidence 33344445555565556677889999999999999999999999999999999999999995 99999999998888888
Q ss_pred HHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHH
Q 008934 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (548)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (548)
+.++++. +.+...+..++.|.+........++.+.+..|++ .|+++++++
T Consensus 299 ~~lal~~-----------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~-------~~GRv~si~ 348 (524)
T PF05977_consen 299 LLLALSP-----------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDW-------VRGRVFSIY 348 (524)
T ss_pred HHHhcch-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-------HHhHHHHHH
Confidence 8777755 6777888888899999988888899999999984 499999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHh
Q 008934 179 YVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 179 ~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~ 222 (548)
......+..+|..+.|.+.+.+|-+..+.++++..+++.++...
T Consensus 349 ~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~ 392 (524)
T PF05977_consen 349 QMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR 392 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887766666555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.9e-09 Score=110.98 Aligned_cols=172 Identities=10% Similarity=0.048 Sum_probs=126.4
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhh---cCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREY---NMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT 93 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---g~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 93 (548)
|.++......++....+.......+.|+.+.+ +.+....+.+.++..+...++.++.|++.||+ |||+.+.++.++
T Consensus 215 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l 293 (396)
T TIGR00882 215 RKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTI 293 (396)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHH
Confidence 33444444444444444455567788887765 56677788888888899999999999999996 999999999888
Q ss_pred HHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHH
Q 008934 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (548)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (548)
..++..+...+. +.+.+++.+.+.+++..........+..+..+++. ++.
T Consensus 294 ~~l~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------~at 343 (396)
T TIGR00882 294 MSVRIIGSSFAT-----------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL-------SAT 343 (396)
T ss_pred HHHHHHHHHhcC-----------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce-------EEE
Confidence 888776655433 55667777888888876655555556666666522 455
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHH
Q 008934 174 YFSW-YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALS 219 (548)
Q Consensus 174 ~~~~-~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~ 219 (548)
..+. ++...++|++++|.++|++.+..||+.+|.+.+++.++..++
T Consensus 344 ~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 344 IYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred eehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 5555 456789999999999999999999999999988776655544
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.8e-09 Score=109.21 Aligned_cols=157 Identities=10% Similarity=0.010 Sum_probs=118.9
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|..+.......+....++++..++|.|+++ +|+++.+++.+.+...++..++.++.|+++||+-+||+++.++.++..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 275 (355)
T TIGR00896 197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV 275 (355)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence 444555555566677888888999999874 7999999999999999999999999999999952456677777777777
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+...+.... +.... ....+.|++.|...+...+.+.+..+++ ++++..++
T Consensus 276 ~~~~~~~~~-----------------------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~~~g~~~~ 325 (355)
T TIGR00896 276 GLCGLLFAP-----------------------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQA------AQAAALSA 325 (355)
T ss_pred HHHHHHHhh-----------------------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCH------HHHHHHHH
Confidence 766555432 11111 1346778999998888877777665543 23688888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccC-chh
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLG-WKV 204 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g-~~~ 204 (548)
+.+...++|..++|.+.|++.|+.| |.+
T Consensus 326 ~~~~~~~~~~~~gp~~~G~l~~~~g~~~~ 354 (355)
T TIGR00896 326 MAQSIGYLLAALGPLFVGVLHDISGNWLM 354 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 8888889999999999999999876 443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-09 Score=110.01 Aligned_cols=162 Identities=15% Similarity=0.171 Sum_probs=117.0
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHH-HH-HH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFG-CF-TC 94 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~-~~-~~ 94 (548)
|.++.+....++.....+++..+++.|+++.+|+++.+++.+.+...++..++.++.|+++||+.+||+..... .. ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 295 (379)
T TIGR00881 216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI 295 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555666667777777888899999999999999999999999999999999999999999842333332221 11 11
Q ss_pred HHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHH
Q 008934 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (548)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (548)
.++....... + ..+.....+..++.|.......+....+..|.+|+++ |+++
T Consensus 296 ~~~~~~~~~~---~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-------~g~~ 347 (379)
T TIGR00881 296 IVSLLVYWLN---P------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA-------AGTA 347 (379)
T ss_pred HHHHHHHhcC---c------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch-------hHHH
Confidence 1121111110 0 0133444455556665555555666778899998844 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhhh
Q 008934 175 FSWYYVFVSASSIVAVTCIVYIQDNLGWKVGF 206 (548)
Q Consensus 175 ~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f 206 (548)
+++.+...++|..++|.+.|++.+++||+..|
T Consensus 348 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 348 AGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 99999999999999999999999999998765
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-09 Score=110.36 Aligned_cols=147 Identities=12% Similarity=-0.020 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 008934 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (548)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (548)
..+...+..++....++.+..++| |+.+++|+++.+++.+.....++..++.+++|+++||+ |||+......+.....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 328 (398)
T TIGR00895 251 ITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFA 328 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHH
Confidence 344455566677777888888888 66788999999999999999999999999999999996 9985544433333322
Q ss_pred HHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHH
Q 008934 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (548)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (548)
..+..... +.+...+..++.|++.+...+...+++.|.+|+ ++|++++++
T Consensus 329 ~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~ 378 (398)
T TIGR00895 329 VLVGSTLF-----------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPT-------AIRATGVGW 378 (398)
T ss_pred HHHHHHhh-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH-------HHHHHHHHH
Confidence 22222111 445566777888999999999999999999998 449999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 008934 178 YYVFVSASSIVAVTCIVYI 196 (548)
Q Consensus 178 ~~~~~~ig~~~gp~i~~~l 196 (548)
.+...++|..+||.++|++
T Consensus 379 ~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 379 AIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999875
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.4e-09 Score=111.58 Aligned_cols=174 Identities=11% Similarity=0.077 Sum_probs=131.3
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhH--hhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCR--EYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 94 (548)
|.++......++..+.+.......+.|+.. +.+.+....+.+.....+......++.|++.||+ ++|+.+..+.++.
T Consensus 206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~ 284 (395)
T PRK10054 206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF 284 (395)
T ss_pred ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence 455555566666666666666677777754 4566677778888888777777888999999996 9999999998888
Q ss_pred HHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHH
Q 008934 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (548)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (548)
.++........ .+.+...++..+.++|.+...|...+++.+..|++. |+++
T Consensus 285 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~-------~~~~ 335 (395)
T PRK10054 285 VIGLVGFIFSG----------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM-------KASY 335 (395)
T ss_pred HHHHHHHHHcc----------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc-------ceeh
Confidence 77776665422 144556667888999998888898999999998854 6777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHH
Q 008934 175 FSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (548)
Q Consensus 175 ~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~ 221 (548)
++... ...+|..+||.++|++.|+.|....|.+.+....++.+...
T Consensus 336 ~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 336 FSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 77643 56799999999999999999988888877666555555444
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-08 Score=106.44 Aligned_cols=168 Identities=10% Similarity=-0.002 Sum_probs=121.9
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.++..+...++.....++...++++++.+++|+++.+++.+...+.++..++.++.|++.||. ++ +.+..+..+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~-~~l~~~~~~~~~ 293 (394)
T PRK10213 216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VK-LALAGAPLVLAV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ch-hHHHHHHHHHHH
Confidence 3345544455555566666666765555678899999999999999999999999999999994 54 444444444333
Q ss_pred H-HHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 97 G-MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 97 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
. ..+....+ +.+.+.+..++.|++.+...+..++++.+..|++ +++..
T Consensus 294 ~~~~l~~~~~-----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 342 (394)
T PRK10213 294 SALVLTLWGS-----------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ--------AEKAG 342 (394)
T ss_pred HHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc--------HHHHH
Confidence 3 33333322 4566677788889999999998998888888742 34556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHH
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 217 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~ 217 (548)
+......++|..+||.++|++.|..|++..+...+++.++..
T Consensus 343 ~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 343 SIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence 666677799999999999999999999888888766544333
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-09 Score=115.62 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=129.1
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.+.......++...+++......+.|+++.+|.++...++......++..++.++.++++||+ |+|+++.++.++..+
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i 306 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC 306 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 5566666677777777777777888888888998887766655555677888999999999996 999999999988888
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+.++..+.. ..+.+.+.+..++.++|.+...+...++.+|..|+++.+..++.++..++
T Consensus 307 ~~~~~~~~~---------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~ 365 (448)
T PRK09848 307 GYLLFFWVS---------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYS 365 (448)
T ss_pred HHHHHHHcC---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHH
Confidence 776665432 12456667778889999999999999999999987653222244688899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCc
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLGW 202 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g~ 202 (548)
.+.....+|..+|+.+.+.+.+..||
T Consensus 366 ~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 366 LFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999988776665
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.2e-09 Score=110.61 Aligned_cols=167 Identities=11% Similarity=0.034 Sum_probs=125.7
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHH-hHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYL-CREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
|.++...+..++...+.++...+++.|+ ++.+|+++.++++....+.++..++.+++|++.||+ ||||++..+.++..
T Consensus 258 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~ 336 (438)
T PRK10133 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Confidence 3344455556666677777778889896 567999999999999999999999999999999996 99999998877766
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
++..+..+.. +. ..+....+.|+|.+...|+..+...+.+|++. +.+.
T Consensus 337 ~~~~~~~~~~-----------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~--------~~as 384 (438)
T PRK10133 337 ALCLISAFAG-----------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT--------KYGS 384 (438)
T ss_pred HHHHHHHHcC-----------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh--------ccch
Confidence 6555444322 11 22455678899999999999999999987643 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC-chhhhHHHHHHHHHHH
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSA 217 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g-~~~~f~i~~~~~~i~~ 217 (548)
++.. ...+|+.++|.+.|++.+..| -+..|++..+..+..+
T Consensus 385 ~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_pred hHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 4333 344688889999999999887 7888887666544333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-08 Score=106.33 Aligned_cols=163 Identities=11% Similarity=-0.023 Sum_probs=122.9
Q ss_pred HHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhccc
Q 008934 28 FERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTIL 107 (548)
Q Consensus 28 ~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~ 107 (548)
+...........++.|+++.+|.++.++|.+.....++..++.++.+++.||+ ++++++..+.. ..+...++...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~~-- 291 (393)
T PRK11195 216 LFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQH-- 291 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHHh--
Confidence 33445556667778899999999999999999999999999999999999996 99988887753 333333333322
Q ss_pred CCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHH
Q 008934 108 PGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 187 (548)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 187 (548)
+.+...+..++.|++.+...+..++.+.+..|++. .+++++++.+...++|..
T Consensus 292 ---------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~------~~g~~~a~~~~~~~~~~~ 344 (393)
T PRK11195 292 ---------------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV------GAGHSIAVQNFNENLAML 344 (393)
T ss_pred ---------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc------cchhHHHHHhHHHHHHHH
Confidence 45556667778899999988888888877644422 268999999999999999
Q ss_pred HHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHh
Q 008934 188 VAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 188 ~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~ 222 (548)
++..+.+.+ +.+|-+..+++.+...++.....+.
T Consensus 345 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK11195 345 LMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALL 378 (393)
T ss_pred HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 999988866 5678777777766655555444433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-08 Score=110.17 Aligned_cols=177 Identities=12% Similarity=-0.031 Sum_probs=122.3
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHH--------HH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRM--------IG 88 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~--------~~ 88 (548)
+.++......++....++....++|.|+++.+|++..++++..+...++..++.+++|+++||+ ++|+. +.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~ 339 (465)
T TIGR00894 261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIF 339 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHH
Confidence 4567777788888899999999999999999999999999999999999999999999999985 54421 11
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccc
Q 008934 89 FGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSK 168 (548)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 168 (548)
.+......+..++.... .. .+....++...+.+.+.+...+.......|..|+
T Consensus 340 ~~~~~~~~~~~~~~~~~-~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------- 392 (465)
T TIGR00894 340 NGIGGLGPGIFAYALPY-LS-------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR------- 392 (465)
T ss_pred HHHHHHHHHHHHHHHHH-cC-------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-------
Confidence 11111111111111111 00 1233334444444555555555555555555543
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---CchhhhHHHHHHHHHHHHHHHh
Q 008934 169 GALQSYFSWYYVFVSASSIVAVTCIVYIQDNL---GWKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 169 ~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~---g~~~~f~i~~~~~~i~~~~~~~ 222 (548)
.++.+.++.+...++|+.++|.+.|++.+.. +|..+|.+.++..+++.++...
T Consensus 393 -~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 393 -FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 3899999999999999999999999887653 3888898888777776655443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-08 Score=108.06 Aligned_cols=162 Identities=9% Similarity=-0.003 Sum_probs=114.6
Q ss_pred hhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 008934 35 GFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPA 114 (548)
Q Consensus 35 ~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 114 (548)
.+..+.|.+ .+++|++....++......+...++.+++|+++||+ |||+++..+.++.+++.+++..... ..
T Consensus 289 ~~~~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~-~~----- 360 (479)
T PRK10077 289 VVLYYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFY-TQ----- 360 (479)
T ss_pred HHHHHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHh-cC-----
Confidence 333444544 457899988888888888888999999999999996 9999999999988888777664320 00
Q ss_pred cccccCCCcCCCccchHHHHHHHHHHHHhccc-cccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008934 115 CDQLRNGCESATWSQLMPLYFAFGLMSLGSGG-IRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI 193 (548)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~ 193 (548)
. ..........+.+.+.+. ..|+.+++++|.+|+ ++|++++++.+...++|.++++.+.
T Consensus 361 ------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~~g~~~~~~~~ 420 (479)
T PRK10077 361 ------------A-PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN-------AIRGKALAIAVAAQWIANYFVSWTF 420 (479)
T ss_pred ------------c-ccHHHHHHHHHHHHHHhccccchhHHHhHhhCCh-------hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 112223333444444443 246778999999997 4499999999998888888886555
Q ss_pred H------HhhhccCchhhhHHHHHHHHHHHHHHHhcC
Q 008934 194 V------YIQDNLGWKVGFGVPAVIMLLSALSFFLAS 224 (548)
Q Consensus 194 ~------~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~ 224 (548)
+ ++.+..+|+..|++.++..+++.+..+...
T Consensus 421 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (479)
T PRK10077 421 PMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFV 457 (479)
T ss_pred HHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhcc
Confidence 4 344677888889887776666655544433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-08 Score=101.14 Aligned_cols=82 Identities=10% Similarity=-0.084 Sum_probs=69.2
Q ss_pred chHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc---------
Q 008934 129 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN--------- 199 (548)
Q Consensus 129 ~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~--------- 199 (548)
++..++++.+++|.|.+...++.++++++..|+++ +++.+++......+|..+||.+++.+...
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~-------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIET-------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch-------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 67889999999999999999999999999998854 78899999999999999999999987731
Q ss_pred -------cCchhhhHHHHHHHHHHH
Q 008934 200 -------LGWKVGFGVPAVIMLLSA 217 (548)
Q Consensus 200 -------~g~~~~f~i~~~~~~i~~ 217 (548)
.+|++++++.+.+.++..
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~ 106 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLA 106 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 368889886655444333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.6e-09 Score=108.69 Aligned_cols=154 Identities=13% Similarity=0.035 Sum_probs=112.9
Q ss_pred hhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 008934 35 GFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPA 114 (548)
Q Consensus 35 ~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 114 (548)
....++|.|+++..+ ++.+.+++.....+.........+++.||+++.++.+..+.++..++..++...+
T Consensus 226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--------- 295 (400)
T PRK11646 226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--------- 295 (400)
T ss_pred HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh---------
Confidence 345678888876655 7788888888877766655555566666544767777778777777776666544
Q ss_pred cccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008934 115 CDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194 (548)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~ 194 (548)
+.+.+.+...+.++|.+...|...+++.+..|+++ |++++++++...++|..+||.++|
T Consensus 296 --------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~-------~g~~~g~~~~~~~~g~~ig~~l~G 354 (400)
T PRK11646 296 --------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA-------RGSYMGFSRLGLALGGAIGYIGGG 354 (400)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc-------chhhhhHHHHHHHHHHHhcccchH
Confidence 44556666677888888888999999999999855 899999999999999999999999
Q ss_pred Hhhhcc---C-chhhhHHHHHHHHHHHHH
Q 008934 195 YIQDNL---G-WKVGFGVPAVIMLLSALS 219 (548)
Q Consensus 195 ~l~~~~---g-~~~~f~i~~~~~~i~~~~ 219 (548)
++.|+. + ...++.+.++..+++.+.
T Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 355 WLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 998864 2 345555545544444433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-08 Score=107.06 Aligned_cols=187 Identities=12% Similarity=0.098 Sum_probs=128.2
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
+.+|.+.+..++..-+|.+...++|.|+++++ +...+........+...+..|++|+|+||+ |++|++.++.+...+
T Consensus 252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i 328 (462)
T PRK15034 252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI 328 (462)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence 55777777777777777778889999998866 344444444556788889999999999996 999999999887766
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCC----------C-
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDG----------T- 165 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~----------~- 165 (548)
+........ |. .+..+.+.+.+....+.++.|.-..++..++.+.+|+++. .
T Consensus 329 ~~~~~~l~l--p~---------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~ 391 (462)
T PRK15034 329 FSALLFLTL--PG---------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQ 391 (462)
T ss_pred HHHHHHHHh--cc---------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhH
Confidence 654433321 21 0112456666666666666677667777788887874100 0
Q ss_pred ---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhhhHHHHHHHHHHHHHHHhc
Q 008934 166 ---KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL-GWKVGFGVPAVIMLLSALSFFLA 223 (548)
Q Consensus 166 ---~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~-g~~~~f~i~~~~~~i~~~~~~~~ 223 (548)
+.+++-+.+.|+......+|+.+-|.+.|...+.. ++...|+...+..+++..+.+..
T Consensus 392 ~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 392 AQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 00124567777888888898889998877777665 48888888877776666655443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-08 Score=109.15 Aligned_cols=164 Identities=16% Similarity=0.188 Sum_probs=140.4
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.....++..++..+++.......+.|.+..+|.+ ...+.+..+..+...++.++.++++||+ |+||++..+.++.++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence 66777788888888998888889999999888888 5567788889999999999999999996 999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+.++..+.. ..+.+.+++..++.|++.+...+...++++|..+.++.+.+++..+..++
T Consensus 303 ~~~~~~~~~---------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s 361 (428)
T PF13347_consen 303 GFLLLFFLG---------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS 361 (428)
T ss_pred HHHHHHHHH---------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence 888877654 12678888889999999999999999999999997765444455788899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCch
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLGWK 203 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g~~ 203 (548)
.+.....+|.++++.+.+.+.+..||.
T Consensus 362 ~~~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 362 VNSFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999888766654
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-08 Score=104.33 Aligned_cols=173 Identities=16% Similarity=0.191 Sum_probs=142.8
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.+.+-+...++.+=+.-++..+...|-..++|++.++...+....++...++.+++|+|.||+ |.|+++.++++++.+
T Consensus 252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~ 330 (438)
T COG2270 252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSI 330 (438)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHH
Confidence 3555556677777777788889999999999999999999999999999999999999999995 999999999998888
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
..+...+.. ....+.+.-.+.|...|..++..-++.++.+|+++ -++.|+
T Consensus 331 ~~~~~~~~~-----------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k-------~~~fFg 380 (438)
T COG2270 331 AALYLIFLE-----------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK-------EGRFFG 380 (438)
T ss_pred HHHHHHHcc-----------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc-------ccceee
Confidence 776666543 23345555567899999999999999999999976 478999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccC-chhhhHHHHHHHHHHHHHH
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSF 220 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~ 220 (548)
++......++.+||.+.+.+.+..| -|..+....++.+++++++
T Consensus 381 lyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 381 LYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence 9999999999999999999988665 6666665555555555443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.2e-08 Score=102.07 Aligned_cols=160 Identities=13% Similarity=0.119 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Q 008934 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (548)
.+.......+....++....+.|.|+++++|+++.+++.+.....++..++.++.|++.||+ |||+.+..+..+..++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~ 286 (385)
T TIGR00710 208 FWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSA 286 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 44444445555666777778889999999999999999999999999999999999999996 99999998888777776
Q ss_pred HHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHH
Q 008934 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (548)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (548)
.++......+ ......+....++.|+|.+...+.......|..|+ + |+++.++.
T Consensus 287 ~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-------~g~~~~~~ 340 (385)
T TIGR00710 287 VLLEITAILG------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-V-------AGTASALF 340 (385)
T ss_pred HHHHHHHHhc------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-c-------chHHHHHH
Confidence 6665432000 01234455556778888888888888888887763 2 68888888
Q ss_pred HHHHHH-HHHHHHHHHHHhhhccCchhhh
Q 008934 179 YVFVSA-SSIVAVTCIVYIQDNLGWKVGF 206 (548)
Q Consensus 179 ~~~~~i-g~~~gp~i~~~l~~~~g~~~~f 206 (548)
+..... |++.+| +.+.+.+..+|...+
T Consensus 341 ~~~~~~~g~i~~~-~~~~~~~~~~~~~~~ 368 (385)
T TIGR00710 341 GTLRLVLGAIVGY-LVSLIHGNTAWPMSL 368 (385)
T ss_pred HHHHHHHHHHHHH-HHHhccccChHHHHH
Confidence 777654 555555 455554443444333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-08 Score=120.63 Aligned_cols=164 Identities=12% Similarity=0.082 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChh-HHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETT-AATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~-~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
.++..++..++.....+.+..+++.|+++.+|++.. +++++.+...++..++.++.|+++||+ ++++++.++.++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~ 311 (1146)
T PRK08633 233 VLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLAL 311 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHH
Confidence 344444455555566667778899999999999999 999999999999999999999999996 999999888887777
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+.+++.... +.+.+++..++.|++.++..+...+++.+..|++. |+++++
T Consensus 312 ~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~-------rg~~~~ 361 (1146)
T PRK08633 312 SLFLLPTAP-----------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE-------LGKVLA 361 (1146)
T ss_pred HHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc-------hhhhhH
Confidence 776666543 55667777888999999988999999999998854 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc-cCchhhhHHHHHH
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDN-LGWKVGFGVPAVI 212 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~-~g~~~~f~i~~~~ 212 (548)
+.+...++|.++++.+++.+... +++...|++.+.+
T Consensus 362 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 362 ANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999999998888877766542 3455555554443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=110.49 Aligned_cols=167 Identities=17% Similarity=0.054 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHH------------HHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Q 008934 25 NEAFERMATVGFTPNMILYLCREYNMETTAATN------------IIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (548)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~------------i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~ 92 (548)
..++..+.+|++..++|.+++ +.|+++.+++. ...+..++..++.+++++++||+ |||++++++..
T Consensus 296 ~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~ 373 (502)
T TIGR00887 296 SWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFF 373 (502)
T ss_pred HHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHH
Confidence 344556788899888888885 78887653321 12233445556788999999996 99999988887
Q ss_pred HHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhH
Q 008934 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (548)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (548)
+..++..+..+... . . . +...+....+....+..+..+....+.+|.+|++ .|+
T Consensus 374 ~~~~~~~~l~~~~~-~----------------~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~-------~R~ 427 (502)
T TIGR00887 374 ILTVLFFVLGFAYN-H----------------L-S-THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTR-------YRS 427 (502)
T ss_pred HHHHHHHHHHHHHH-h----------------c-c-hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchh-------HHH
Confidence 77766655554320 0 0 0 1111111111122222233456667789999994 499
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc----------cCchhhhHHHHHHHHHHHHH
Q 008934 173 SYFSWYYVFVSASSIVAVTCIVYIQDN----------LGWKVGFGVPAVIMLLSALS 219 (548)
Q Consensus 173 ~~~~~~~~~~~ig~~~gp~i~~~l~~~----------~g~~~~f~i~~~~~~i~~~~ 219 (548)
++.++.+....+|++++|.+.+++.+. .++...|++.++..+++.+.
T Consensus 428 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 428 TAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998873 34455677776666555443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-08 Score=120.49 Aligned_cols=180 Identities=8% Similarity=-0.035 Sum_probs=133.3
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.++..++..++..+.++++..++|.|+++.+|.++.+++++.+.+.++..++.++.|+++|++ ++++.+..+.++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL 303 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence 4556666666677777788888999999999999999999999999999999999999999986 777766666665555
Q ss_pred HHHHHHHhc--ccC-C--CCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhh
Q 008934 97 GMVLLWSTT--ILP-G--AKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (548)
Q Consensus 97 ~~~l~~~~~--~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 171 (548)
+.+.+.+.. ..+ . +..- .......+.+.++++.++.|++.+...+...+++.+.+|++. |
T Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~-------~ 368 (1140)
T PRK06814 304 FGLDLAFASSSVPAEPAQLKSI--------LVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH-------R 368 (1140)
T ss_pred HHHHHHhcccccccccccccch--------hhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc-------c
Confidence 444443320 000 0 0000 000000245667788888999999999999999999999855 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCchhhhHHHHHH
Q 008934 172 QSYFSWYYVFVSASSIVAVTCIVYIQD-NLGWKVGFGVPAVI 212 (548)
Q Consensus 172 ~~~~~~~~~~~~ig~~~gp~i~~~l~~-~~g~~~~f~i~~~~ 212 (548)
+++++..+...++|..+++.+.+.+.+ ..++...|++.+.+
T Consensus 369 G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 369 ARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999999999999999998874 34666666554443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.4e-08 Score=102.07 Aligned_cols=144 Identities=9% Similarity=0.019 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHH-HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 008934 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWT-AATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~-~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (548)
.+..++..++..++++....+++.|+++ +|+++.+.+.+..+.. +...++.+++|+++||+ ||||.+..+.++..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 5556666777788899999999999987 9999999998887766 56789999999999996 9999999888877776
Q ss_pred HHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHH
Q 008934 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (548)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (548)
..+.....+... ++ + .+..+.+.+....++.+++.+...+...++..+.+|++. |++.+++
T Consensus 289 ~~~~~~~~~~~~----------~~-~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~-------~g~~~g~ 349 (356)
T TIGR00901 289 NAGFVWLASNGH----------HD-G-ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF-------GATQMAL 349 (356)
T ss_pred HHHHHHHHhcCc----------cc-c-cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc-------cHHHHHH
Confidence 655443210000 00 0 000134667777888899999999999999999999955 8999999
Q ss_pred HHHHHH
Q 008934 178 YYVFVS 183 (548)
Q Consensus 178 ~~~~~~ 183 (548)
++...+
T Consensus 350 ~~~~~~ 355 (356)
T TIGR00901 350 LSSLSA 355 (356)
T ss_pred HHHHHh
Confidence 776654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.7e-08 Score=99.50 Aligned_cols=166 Identities=13% Similarity=-0.033 Sum_probs=113.7
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccch---HHHHH-HHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRY---RMIGF-GCF 92 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk---~~~~~-~~~ 92 (548)
|.++.+....++....+|++..++|.|++ +.|++.. ++.......+...++ .++++||. .|| +.... ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~-~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALR-PAGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence 55677878899999999999999999996 5788865 565555555544444 57888874 543 33232 333
Q ss_pred HHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhH
Q 008934 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (548)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (548)
+..+......... +.........+.+.+.....+..+++.+|.+|++. |+
T Consensus 266 ~~a~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~-------rg 315 (368)
T TIGR00903 266 LIAAFFLALAFEL-----------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL-------HG 315 (368)
T ss_pred HHHHHHHHHHHcc-----------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh-------cC
Confidence 3333333333222 22233334455566666667778899999999944 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHH
Q 008934 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSF 220 (548)
Q Consensus 173 ~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~ 220 (548)
++.++.+...++|++.+|.+.+.+.. |.+..|.+.++..+++.+..
T Consensus 316 t~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 316 KAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887773 66777877776666655554
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-07 Score=101.34 Aligned_cols=206 Identities=17% Similarity=0.285 Sum_probs=153.8
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
.|.+..++....+....+.+.......-+.+.++++.++.|++.+.+-++..+...+..|.+-|. -|-|.+-+|.++++
T Consensus 95 ~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~ 173 (735)
T KOG3626|consen 95 IKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMG 173 (735)
T ss_pred cchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHH
Confidence 36666666666666666668888888889999999999999999999999999999999999995 88899999999999
Q ss_pred HHHHHHHHhcccCCCCC--------C-Ccc----------cccC-------CCc---CCCccchHHHHHHHHHHHHhccc
Q 008934 96 LGMVLLWSTTILPGAKP--------P-ACD----------QLRN-------GCE---SATWSQLMPLYFAFGLMSLGSGG 146 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~--------~-~~~----------~~~~-------~~~---~~~~~~~~~~~i~~~l~g~g~g~ 146 (548)
++.++.++-+++..-+. . ++. +... .++ ..+..-+..++++.++.|+|...
T Consensus 174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp 253 (735)
T KOG3626|consen 174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP 253 (735)
T ss_pred HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence 99999885332211000 0 001 0000 111 11212234678889999999999
Q ss_pred cccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc------------------cC-chhhhH
Q 008934 147 IRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN------------------LG-WKVGFG 207 (548)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~------------------~g-~~~~f~ 207 (548)
.++.-.+++=|-..+++ ....+++.+.+..+|.++|.++++.+.+. .| |+..|+
T Consensus 254 i~tlGisYiDDnvk~~~-------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFL 326 (735)
T KOG3626|consen 254 IFTLGISYIDDNVKKKN-------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFL 326 (735)
T ss_pred CccCCCccccccccccC-------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHH
Confidence 99988888877776643 68899999999999999999999886531 13 889999
Q ss_pred HHHHHHHHHHHHHHhcCCceec
Q 008934 208 VPAVIMLLSALSFFLASPFYVK 229 (548)
Q Consensus 208 i~~~~~~i~~~~~~~~~~~~~~ 229 (548)
+++.+.++..+-++...++.++
T Consensus 327 i~g~~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 327 ICGALLLFSAVPLFFFPKELPK 348 (735)
T ss_pred HHHHHHHHHHHHHHhCcccCcc
Confidence 9999888887777666655543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.7e-08 Score=105.35 Aligned_cols=164 Identities=10% Similarity=0.042 Sum_probs=112.7
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.++.++...++...+........+.|.+..++ ++...+.+.....+...++.+++++++||+ |+|+.+..+.+...+
T Consensus 229 ~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 306 (444)
T PRK09669 229 SQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVI 306 (444)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 344444445555545544333444444333333 333444556666777888889999999996 999999988776655
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+.....+.. ..+.+.+++..++.|++.+...+...++++|..+.++.+..++..+..++
T Consensus 307 ~~~~~~~~~---------------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s 365 (444)
T PRK09669 307 LSALIFFIP---------------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFS 365 (444)
T ss_pred HHHHHHHhC---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHH
Confidence 433332211 11556677777889999999999999999999985543332244567788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCch
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLGWK 203 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g~~ 203 (548)
.......+|.++|+.++|++.+..||.
T Consensus 366 ~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 366 TNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 888899999999999999998877773
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3e-08 Score=106.99 Aligned_cols=176 Identities=15% Similarity=0.134 Sum_probs=148.2
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccc--hHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGR--YRMIGFGCFTC 94 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Gr--k~~~~~~~~~~ 94 (548)
+.++.......+..++++.-..+++.|.. .+|++..++..+.++..+...++.++.|+++|+. .. +.+..++++..
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 66777777888899999999999999977 9999999999999999999999999999999996 63 34455555555
Q ss_pred HHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHH
Q 008934 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (548)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 174 (548)
.++...+++.. +.+.++..-.+.|++.|...+.....+.|..+.++ ...+
T Consensus 376 gl~~~~~p~~~-----------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~-------l~~a 425 (509)
T KOG2504|consen 376 GLARLFLPFAT-----------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK-------LSNA 425 (509)
T ss_pred HHHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh-------cchH
Confidence 55655555544 56778888888999999988888889999999855 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccC-chhhhHHHHHHHHHHHHHHHhcC
Q 008934 175 FSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFLAS 224 (548)
Q Consensus 175 ~~~~~~~~~ig~~~gp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~~~ 224 (548)
+++......++..+||++.|++.|..| |...|+.+++..+++..+.++..
T Consensus 426 ~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 426 YGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 999999999999999999999999887 99999999998888876655544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-07 Score=97.80 Aligned_cols=145 Identities=7% Similarity=-0.012 Sum_probs=95.4
Q ss_pred HHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCC
Q 008934 31 MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGA 110 (548)
Q Consensus 31 ~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~ 110 (548)
........+.+.|+++++|+++.+.+.+.....++..++.++.|++.||+ |||+++.++..+..++..+..+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~----- 290 (392)
T PRK10473 217 TVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSP----- 290 (392)
T ss_pred HHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 33344455667788889999999999999999999999999999999996 999999999888888777766543
Q ss_pred CCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 008934 111 KPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV 190 (548)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp 190 (548)
+.........+.+.|.+...+... ..+..|.++ |+ +..+....++..+|+
T Consensus 291 ------------------~~~~~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~-------~~---g~~~~~~~~~~~~g~ 340 (392)
T PRK10473 291 ------------------SHAVSLFGITLICAGFSVGFGVAM--SQALGPFSL-------RA---GVASSTLGIAQVCGS 340 (392)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHhHHHH--HHHhccCcc-------cc---cHHHHHHHHHHHHHH
Confidence 222333333444444443333322 233334322 22 222233456777777
Q ss_pred HHHHHhhhccCchhhhHHHHH
Q 008934 191 TCIVYIQDNLGWKVGFGVPAV 211 (548)
Q Consensus 191 ~i~~~l~~~~g~~~~f~i~~~ 211 (548)
.+++++.++.|+.....+.+.
T Consensus 341 ~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 341 SLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred HHHHHHHHHhccchhHHHHHH
Confidence 777788777777654444444
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-07 Score=96.98 Aligned_cols=148 Identities=11% Similarity=0.055 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Q 008934 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (548)
.+..+....+...+.+....+.+.|+.+++|+++.+++.+.....++..++.+++|+++||+ ||||++.++..+..+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 274 (377)
T PRK11102 196 VLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMG 274 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence 34444444455555666667778888888999999999999999999999999999999996 99999998887654433
Q ss_pred HHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHH
Q 008934 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (548)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (548)
+........+ .+.+...++..+.+.+.+...+.....+.|..|+ + ++++.+..
T Consensus 275 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~g~~~~~~ 327 (377)
T PRK11102 275 IWLVVSALLD-------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFPH-M-------AGTASSLA 327 (377)
T ss_pred HHHHHHHHHh-------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhccccc-c-------chHHHHHH
Confidence 2222211000 1334444444455555555555666666666653 2 67777776
Q ss_pred HHHH-HHHHHHHHHHHH
Q 008934 179 YVFV-SASSIVAVTCIV 194 (548)
Q Consensus 179 ~~~~-~ig~~~gp~i~~ 194 (548)
.... .+|+.+++.+++
T Consensus 328 ~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 328 GTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 5543 567777776544
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.2e-06 Score=84.57 Aligned_cols=155 Identities=16% Similarity=0.116 Sum_probs=110.0
Q ss_pred hHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcC
Q 008934 45 CREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCES 124 (548)
Q Consensus 45 ~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 124 (548)
.+++|+++.+.+.+.......+.+..++.|.++||+ ||||.-++.++++.+..+.- ..+
T Consensus 61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k-~~~------------------- 119 (354)
T PF05631_consen 61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTK-HSS------------------- 119 (354)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHH-hcc-------------------
Confidence 368999999999999999999999999999999996 99999999998888876533 222
Q ss_pred CCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhccC--
Q 008934 125 ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY-VFVSASSIVAVTCIVYIQDNLG-- 201 (548)
Q Consensus 125 ~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~~gp~i~~~l~~~~g-- 201 (548)
+...++++|++-|+++....++--+.....-.+++- . ++..+.-++... ..+.+-++.+..++-++.+..+
T Consensus 120 ----~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~-~-~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g 193 (354)
T PF05631_consen 120 ----NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGF-P-QEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFG 193 (354)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C-hHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCC
Confidence 688899999999999999888877665443322210 0 022444444333 2233344444445556666554
Q ss_pred chhhhHHHHHHHHHHHHHHHhcCCc
Q 008934 202 WKVGFGVPAVIMLLSALSFFLASPF 226 (548)
Q Consensus 202 ~~~~f~i~~~~~~i~~~~~~~~~~~ 226 (548)
...+|..+.++.+++.++....+++
T Consensus 194 ~vaPF~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 194 PVAPFDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred CcchHHHHHHHHHHHHHHHHhcccc
Confidence 4789998888777777666554444
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=6e-08 Score=105.34 Aligned_cols=142 Identities=12% Similarity=0.002 Sum_probs=102.1
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCC
Q 008934 46 REYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESA 125 (548)
Q Consensus 46 ~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (548)
..++.+.. +......+....+.+++++++||+ |||+++.++.++..++.+++.... .
T Consensus 351 ~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~---~---------------- 407 (505)
T TIGR00898 351 GNLGGNIY---LDLFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVP---V---------------- 407 (505)
T ss_pred cccCCChH---HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcC---C----------------
Confidence 34555543 333345566778889999999996 999999999888777776666533 1
Q ss_pred CccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhh
Q 008934 126 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVG 205 (548)
Q Consensus 126 ~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~ 205 (548)
...+...+..++.+.+.+...+..+.+.+|.+|+ +.|++++++.+....+|++++|.+.+ +. ..++..+
T Consensus 408 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~ 476 (505)
T TIGR00898 408 --DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT-------VVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLP 476 (505)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH-------HHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhH
Confidence 1123344444555666777778888999999998 44899999999999999999999988 43 4566777
Q ss_pred hHHHHHHHHHHHHHHH
Q 008934 206 FGVPAVIMLLSALSFF 221 (548)
Q Consensus 206 f~i~~~~~~i~~~~~~ 221 (548)
+.+.++..+++.+..+
T Consensus 477 ~~~~~~~~~~~~~~~~ 492 (505)
T TIGR00898 477 LVLFGGLALLAGILTL 492 (505)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777766665555443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.4e-08 Score=99.11 Aligned_cols=141 Identities=18% Similarity=0.173 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHH
Q 008934 22 IIANEAFERMATVGFTPNMILYLCREYNME-TTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVL 100 (548)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s-~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l 100 (548)
.+...++..+.++....+++.|+.+++|++ ..+++.+.....+...++.++.|+++||+ |+|+...+......++...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 289 (352)
T PF07690_consen 211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGALG 289 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHH
Confidence 455556666788889999999999999999 89999999999999999999999999995 9988888777776666655
Q ss_pred HHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHH
Q 008934 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (548)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (548)
+..... ..+....++..++.|++.+...+...+++.|.+|++ +|+++.++.+.
T Consensus 290 ~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~ 342 (352)
T PF07690_consen 290 LLLLPF--------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPE-------YRGTAFGLFNS 342 (352)
T ss_dssp HCCSHH--------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTC-------HHHHHHHHHHH
T ss_pred HHHHHH--------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHH
Confidence 554330 114456666788899999999999999999999984 49999999999
Q ss_pred HHHHHHHHHH
Q 008934 181 FVSASSIVAV 190 (548)
Q Consensus 181 ~~~ig~~~gp 190 (548)
..++|..+||
T Consensus 343 ~~~~~~~igP 352 (352)
T PF07690_consen 343 IGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHCC
Confidence 9999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.5e-07 Score=91.78 Aligned_cols=168 Identities=15% Similarity=0.096 Sum_probs=134.5
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
+..|.+..-.=+.++.+|.+..++|.++. +.|+|+.++|+..+...+......+..-.+++|...+|+.......++.+
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~ 286 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV 286 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 44566666566789999999999999976 88999999999999999999999999999999876777888878888888
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
|...+.+.+ . +.+.+- .+++|+|.|+.+|....++.+..++.+. -++..+
T Consensus 287 G~~G~~~~P---~-------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~------Aa~LSg 336 (395)
T COG2807 287 GLVGLLLAP---G-------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAI------AAALSG 336 (395)
T ss_pred HHHHHHHhh---h-------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHH------HHHHHH
Confidence 887777644 1 222222 4789999999999999999999887543 667777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-CchhhhHHHHHHHHH
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNL-GWKVGFGVPAVIMLL 215 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~-g~~~~f~i~~~~~~i 215 (548)
+.+....+=+++||.+.|++.|.. +|+.+....+...++
T Consensus 337 maQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~ 376 (395)
T COG2807 337 MAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLL 376 (395)
T ss_pred HhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHH
Confidence 777777888889999999999976 488777665554443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.3e-10 Score=119.93 Aligned_cols=188 Identities=15% Similarity=0.268 Sum_probs=2.9
Q ss_pred HHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCC
Q 008934 31 MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGA 110 (548)
Q Consensus 31 ~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~ 110 (548)
...++.......-+++.++++.+++|++.+.+-++..+..++..|..+|. .|-|.+-+|.+++.+|++++++ |++
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~l----Phf 90 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFAL----PHF 90 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhc----cHh
Confidence 77777777788888999999999999999999999999999999999995 8889999999999999999884 554
Q ss_pred CCCCc----cc-------c-cCCC-------------------cCCCccchHHHHHHHHHHHHhccccccchhhhhhccC
Q 008934 111 KPPAC----DQ-------L-RNGC-------------------ESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQL 159 (548)
Q Consensus 111 ~~~~~----~~-------~-~~~~-------------------~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~ 159 (548)
..+.- .+ . ++.| ......-...++++.++.|+|....++...+++=|-+
T Consensus 91 ~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv 170 (539)
T PF03137_consen 91 LSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNV 170 (539)
T ss_dssp -------------------------------------------------------------SSS----------------
T ss_pred hcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccc
Confidence 32210 00 0 0012 1111113467888999999999999999999999988
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc---------------------cC-chhhhHHHHHHHHHHH
Q 008934 160 DKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN---------------------LG-WKVGFGVPAVIMLLSA 217 (548)
Q Consensus 160 ~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~---------------------~g-~~~~f~i~~~~~~i~~ 217 (548)
++++ -.-+.++.+....+|.++|..+++...+. .| |+..|.+.+.+.++..
T Consensus 171 ~~~~-------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~a 243 (539)
T PF03137_consen 171 SKKN-------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSA 243 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc-------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 8854 67889999999999999999888875521 13 8899998888777666
Q ss_pred HHHHhcCCceecc
Q 008934 218 LSFFLASPFYVKS 230 (548)
Q Consensus 218 ~~~~~~~~~~~~~ 230 (548)
+.++..+++.++.
T Consensus 244 ipl~~FPk~lp~~ 256 (539)
T PF03137_consen 244 IPLFFFPKKLPGT 256 (539)
T ss_dssp -------------
T ss_pred HHHHcCCccCCCc
Confidence 6555555544443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6e-07 Score=94.41 Aligned_cols=152 Identities=11% Similarity=0.060 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHh
Q 008934 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWST 104 (548)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~ 104 (548)
...+....++....++|.|++ ++|+++.+.++......++..++..+++++.||+ |+|+......+...++...+...
T Consensus 211 ~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~ 288 (401)
T PRK11043 211 IFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLA 288 (401)
T ss_pred HHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666777888875 5899999999988888888899999999999996 99998766665555544433322
Q ss_pred cccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHH
Q 008934 105 TILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSA 184 (548)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 184 (548)
...+ ..+.+..++...+.+++.+...+...+...+..|+ + |+++.++.+.....
T Consensus 289 ~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~g~~~g~~~~~~~~ 342 (401)
T PRK11043 289 SLLS------------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A-------TGKAAALQNTLQLG 342 (401)
T ss_pred HHhc------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c-------ChHHHHHHHHHHHH
Confidence 1000 01344455666778888888888888887777754 2 78999999888888
Q ss_pred HHHHHHHHHHHhhhccCchh
Q 008934 185 SSIVAVTCIVYIQDNLGWKV 204 (548)
Q Consensus 185 g~~~gp~i~~~l~~~~g~~~ 204 (548)
++..++.+.+.+.+......
T Consensus 343 ~~~~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 343 LCFLASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHHHHHccCCChhHH
Confidence 88888888888876443333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-07 Score=101.32 Aligned_cols=166 Identities=14% Similarity=0.055 Sum_probs=122.9
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.+...+...++...+.+....+.+.|.+..++ ++...+.+..+..+...++.++.++++||+ |+|+++.++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 556666677777777777777777655554444 566667777777788899999999999996 999999988887776
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+.+........+ ..+.+.+++..++.+++.+...+...++++|..+.++-+.+++..+..++
T Consensus 309 ~~~~~~~~~~~~------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s 370 (473)
T PRK10429 309 SCGVLLLMGLAA------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYS 370 (473)
T ss_pred HHHHHHHHhccC------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHH
Confidence 665554321001 11455666677788999999999999999999885542222244566888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCc
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLGW 202 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g~ 202 (548)
+..+...+|..+|+.+.|++.+..||
T Consensus 371 ~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 371 VQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888999999999999998876666
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.8e-07 Score=91.24 Aligned_cols=173 Identities=10% Similarity=0.061 Sum_probs=120.7
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhh-------------------cCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREY-------------------NMETTAATNIIFIWTAATNFLPIVGALLA 77 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-------------------g~s~~~ag~i~~~~~~~~~~~~~~~G~la 77 (548)
|+.+....+.+.++++|||..-...-..+... ..+...--.=..+.++.-.-+.++.+++.
T Consensus 326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv 405 (528)
T KOG0253|consen 326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV 405 (528)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence 55666777899999999998876554433321 11111111223455677778899999999
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhc
Q 008934 78 DSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 157 (548)
Q Consensus 78 Dr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~ 157 (548)
|| +||||++..+++++.+..+++.... .. ..-..++..+|+.+. +.+.+.+.+-.|
T Consensus 406 er-lGRKkTMal~l~~f~iflfll~~c~------------------~r-n~~tvllf~arafis----g~fqvaYvYtPE 461 (528)
T KOG0253|consen 406 ER-LGRKKTMALSLILFGIFLFLLTTCK------------------TR-NAYTVLLFTARAFIS----GAFQVAYVYTPE 461 (528)
T ss_pred HH-hcchhHHHHHHHHHHHHHHHHHHhc------------------Cc-chhHHHHHHHHHHHh----chheEEEEecCc
Confidence 99 5999999999999999888777643 01 112345666677774 445677888899
Q ss_pred cCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHh
Q 008934 158 QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 158 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~ 222 (548)
.+|. +.|+.+.|....+..+|+++.|.+. +....+-..+..+.+.+.+++.+...+
T Consensus 462 VyPT-------avRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcf 517 (528)
T KOG0253|consen 462 VYPT-------AVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCF 517 (528)
T ss_pred ccch-------hhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHhee
Confidence 9998 5599999999999999999999888 333344555566666666666655444
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-06 Score=90.90 Aligned_cols=180 Identities=11% Similarity=0.029 Sum_probs=132.2
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.+...+...++...+.-....+.+.|+++.-|.+....+.+.++..+.=...-.+.+++..|+ |.|++++++.+..++
T Consensus 207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~v 285 (400)
T PF03825_consen 207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAV 285 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 3344444555666666666778889998865558888888877777788888889999999996 999999999998888
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
=..+.+..+ -|. ........++..+.|+..|....+...++.+..|++. |+++.+
T Consensus 286 R~~l~a~~~-~~~-----------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~-------~at~Q~ 340 (400)
T PF03825_consen 286 RWLLYAYFS-DPW-----------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL-------RATAQG 340 (400)
T ss_pred HHHHHHHhc-CCc-----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc-------hHHHHH
Confidence 766666542 000 0011223344567899999999999999999999955 899999
Q ss_pred HHHHHH-HHHHHHHHHHHHHhhhccCchh------hhHHHHHHHHHHHHHHHh
Q 008934 177 WYYVFV-SASSIVAVTCIVYIQDNLGWKV------GFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 177 ~~~~~~-~ig~~~gp~i~~~l~~~~g~~~------~f~i~~~~~~i~~~~~~~ 222 (548)
++.... .+|.++|..++|++.|++|-+. .+.+.++..++..+++++
T Consensus 341 l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 341 LYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI 393 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 988764 7999999999999999877554 344455544444444444
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-06 Score=88.34 Aligned_cols=124 Identities=14% Similarity=0.142 Sum_probs=97.6
Q ss_pred HHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHH
Q 008934 359 VLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFN 438 (548)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~ 438 (548)
.+++..|+.+| .+....+..|+.+.++-++..++++ +.|.+++.-++.|+-.+.+
T Consensus 422 ~~ffs~klI~k---iGHv~v~~lgLa~~~~Rf~~~S~L~----------------------n~W~vLPieilqgit~ali 476 (618)
T KOG3762|consen 422 FYFFSFKLIEK---IGHVNVMYLGLACNVGRFLYYSYLQ----------------------NPWMVLPIEILQGITHALI 476 (618)
T ss_pred HHHHHHHHHHH---hcccceeeehhhHHHHHHHHHHHhc----------------------CchheeeHHHHHHHHHHHH
Confidence 44455566555 7777889999999999999999988 8898999999999999999
Q ss_pred hhhhhhhcccccCchhhHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 008934 439 MIGQTEFYYTELPKSMSSIASTLSGA-GLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANF 517 (548)
Q Consensus 439 ~~~~~~~~~~~~P~~~rg~~~g~~~~-~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~ 517 (548)
..+.-+++...+|+++|.+++|+... ..++|-.+|+.+.|.+....+ ....|+..++.+++.+
T Consensus 477 Waa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg----------------~~ttf~~~giAcl~~l 540 (618)
T KOG3762|consen 477 WAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG----------------ARTTFRIFGIACLVTL 540 (618)
T ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh----------------hHHHHHHHHHHHHHHH
Confidence 99999999999999999999999854 455888888888887653321 1345777776666665
Q ss_pred HHHHHh
Q 008934 518 LYYLAC 523 (548)
Q Consensus 518 ~~~~~~ 523 (548)
+.+...
T Consensus 541 ~~~~~i 546 (618)
T KOG3762|consen 541 ALFISI 546 (618)
T ss_pred HHHHHh
Confidence 544443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-06 Score=92.70 Aligned_cols=164 Identities=10% Similarity=-0.045 Sum_probs=117.9
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHh-hcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCRE-YNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
|.++......++......++..+++.|+++. .+.+...++...+.+.....++.+++|+++||+ ++||++.++....+
T Consensus 232 ~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~ 310 (410)
T TIGR00885 232 RHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGM 310 (410)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Confidence 3444445556666566667778899998653 255555556667777788899999999999995 99999988888777
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
+..++..... +. .......+.++..+.++|...++..+..+++. +....
T Consensus 311 ~~~ll~~~~~-----------------------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~-------~~~s~ 359 (410)
T TIGR00885 311 ALCLGSIFAG-----------------------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT-------KYGAA 359 (410)
T ss_pred HHHHHHHHcC-----------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHH
Confidence 7766666533 11 23556677888889999999999999998743 22122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc------CchhhhHHHHHHHH
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNL------GWKVGFGVPAVIML 214 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~------g~~~~f~i~~~~~~ 214 (548)
.+ . ...+|+++.|.+.|++.|.. +.+..|+++.++.+
T Consensus 360 ~l-~-~~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~ 402 (410)
T TIGR00885 360 GL-V-MAIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA 402 (410)
T ss_pred HH-H-HHHhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence 22 2 23499999999999999954 47888887766544
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-06 Score=91.93 Aligned_cols=165 Identities=16% Similarity=0.143 Sum_probs=135.9
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.....+...++...++......+..|.+..+|.++..+.+.......+..++.++..+|.+|+ |+||++.++.++.++
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i 314 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAV 314 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHH
Confidence 4444555567777777777788888899989999999999999999999999899999999996 999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+.++..+.. ..+.+++++..++.++|.+...+...++++|..+-++-+..++.-+-.++
T Consensus 315 ~~~~~~f~~---------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s 373 (467)
T COG2211 315 GYLLLYFTP---------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYS 373 (467)
T ss_pred HHHHHHhhc---------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHH
Confidence 999988755 22678888888999999999999999999999986664443344566667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCch
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLGWK 203 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g~~ 203 (548)
......=+|.+++..+.|++.+..||.
T Consensus 374 ~~tF~~K~g~ala~~~~g~~L~~~Gyv 400 (467)
T COG2211 374 GMTFFRKLGLALAGFIPGWILGAIGYV 400 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 777777889999988888888766653
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.7e-07 Score=93.03 Aligned_cols=140 Identities=10% Similarity=0.065 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 008934 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (548)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (548)
.++......++.....+++..+++.|+++.+|+++.+++.+.....+...++.+++|+++||+ |||+.+..+..+...+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~ 304 (366)
T TIGR00886 226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMG 304 (366)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHH
Confidence 344455555666667778889999999999999999999999999999999999999999996 9999888887766666
Q ss_pred HHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHH
Q 008934 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (548)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (548)
..++.... .+ ..+.+...+...+.+++.|...+...++.++..|+ + +++++++
T Consensus 305 ~~~~~~~~-~~------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~-------~g~~~g~ 357 (366)
T TIGR00886 305 AFLVVLGL-VS------------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A-------TGAVSGL 357 (366)
T ss_pred HHHHHhcC-CC------------------cchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h-------cccHHHH
Confidence 55554422 00 00344444555556666666667777888887763 2 7888888
Q ss_pred HHHHHHHH
Q 008934 178 YYVFVSAS 185 (548)
Q Consensus 178 ~~~~~~ig 185 (548)
.+...++|
T Consensus 358 ~~~~~~~g 365 (366)
T TIGR00886 358 VGAIGNLG 365 (366)
T ss_pred HHHhccCC
Confidence 77777665
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.8e-06 Score=86.74 Aligned_cols=143 Identities=10% Similarity=0.062 Sum_probs=100.3
Q ss_pred HHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 008934 32 ATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAK 111 (548)
Q Consensus 32 ~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 111 (548)
.........+.|+++.+|+++.+.+++.....++..++.++.+++.||+ +++... +.....++.+...... ..
T Consensus 222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~-~~--- 294 (394)
T PRK11652 222 GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPG-WF--- 294 (394)
T ss_pred HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHH-Hh---
Confidence 3333345567788888999999999998888888889999999999996 743322 3222222222221111 00
Q ss_pred CCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 008934 112 PPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT 191 (548)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~ 191 (548)
...+.+.+..+..+.++|.+...|...+...|.+|++ ++...++.+...++|+.+++.
T Consensus 295 --------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~~lg~~~~~~ 352 (394)
T PRK11652 295 --------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPYL--------AGTAGALLGGLQNIGSGLAAL 352 (394)
T ss_pred --------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------chHHHHHHHHHHHHHHHHHHH
Confidence 0113456677778889999999999999999888742 578888888888999999999
Q ss_pred HHHHhhhccCch
Q 008934 192 CIVYIQDNLGWK 203 (548)
Q Consensus 192 i~~~l~~~~g~~ 203 (548)
+.+++.+...+.
T Consensus 353 ~~~~~~~~~~~~ 364 (394)
T PRK11652 353 LSAMLPQTGQFS 364 (394)
T ss_pred HHHHccCCchHH
Confidence 998886653333
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-06 Score=92.82 Aligned_cols=179 Identities=12% Similarity=-0.005 Sum_probs=120.0
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccc-------hHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGR-------YRMIGF 89 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Gr-------k~~~~~ 89 (548)
+.+|.+....+++..+++.+..++|.|+.+.+|++..+.|++.++..+...+..+++|+++||. -+ +|-+.=
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rkifn 336 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKIFN 336 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHHHH
Confidence 4567788899999999999999999999999999999999999999999999999999999996 44 222222
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccch
Q 008934 90 GCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKG 169 (548)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 169 (548)
+......+..+..++. ++. .+.+.-++...+.-...|...+-...-..|..|+
T Consensus 337 ~i~~~~~ai~l~~l~~-~~~------------------~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq-------- 389 (466)
T KOG2532|consen 337 TIAFGGPAVFLLVLAF-TSD------------------EHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQ-------- 389 (466)
T ss_pred hHHHHHHHHHHHeeee-cCC------------------CcchHHHHHHHHHHHHcccchhhhHhhhhhccch--------
Confidence 2222222322332221 111 1221111111111111122222222222222333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cCchhhhHHHHHHHHHHHHHHHhc
Q 008934 170 ALQSYFSWYYVFVSASSIVAVTCIVYIQDN---LGWKVGFGVPAVIMLLSALSFFLA 223 (548)
Q Consensus 170 ~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~---~g~~~~f~i~~~~~~i~~~~~~~~ 223 (548)
.-+.++++.+...++.+.++|.+.+.+.+. ..|+.+|++.+++.+++.+.+.+.
T Consensus 390 ~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 390 HAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 358899999999999999999999998842 369999999999888877665543
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.6e-06 Score=91.91 Aligned_cols=186 Identities=10% Similarity=0.066 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhH----HHHHHHHHHHHHHHHHHHHH----HHhhccccchHHH--H
Q 008934 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTA----ATNIIFIWTAATNFLPIVGA----LLADSYVGRYRMI--G 88 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~----ag~i~~~~~~~~~~~~~~~G----~laDr~~Grk~~~--~ 88 (548)
+..++....+....+.-..+.++.|.++..+.+... .+++.+...+...+.+++-. ++.||..+.+... .
T Consensus 274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~ 353 (475)
T TIGR00924 274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT 353 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence 344444555566666666677888877765554322 66777777777777776644 4555421334433 6
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccc
Q 008934 89 FGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSK 168 (548)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 168 (548)
+|.++..++.....+..... +.....+.+++++..++.++|.....|...+++.+..|+
T Consensus 354 ~G~~l~~~~~~~~~~~~~~~--------------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~------- 412 (475)
T TIGR00924 354 LGMLFCGASFLTFAASIWFA--------------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ------- 412 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhc--------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------
Confidence 67888777776666432000 001123788899999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCC
Q 008934 169 GALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (548)
Q Consensus 169 ~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 225 (548)
+.|++++++++....+|..+++.+.....+..+|...|...++..++..++++...|
T Consensus 413 ~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 413 RLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 449999999999999999999988887777677887777777666655555544433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5e-06 Score=88.33 Aligned_cols=189 Identities=12% Similarity=0.004 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 008934 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (548)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (548)
.....+...+...+.-.-...+....+-++-|++..++.+++....+...+..+++.++.||+ |||+.++.+..++.+.
T Consensus 270 ~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~~~ 348 (485)
T KOG0569|consen 270 PLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMAVA 348 (485)
T ss_pred HHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHH
Confidence 345555566666665555555556666778899999999999999999999999999999996 9999999999988887
Q ss_pred HHHHHHhcccCCCCCCCcccccCCCcCCCccchH-HHHHHHHHHHHhccc-cccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLM-PLYFAFGLMSLGSGG-IRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
..++.....+-. ....... ..+.+.++..+..+. ..|...-+.+|.+|++. |..++
T Consensus 349 ~~~~~~~~~l~~---------------~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~-------R~aa~ 406 (485)
T KOG0569|consen 349 LLLMSIALFLSN---------------SFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA-------RSAAQ 406 (485)
T ss_pred HHHHHHHHHHHH---------------HhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc-------hHHHH
Confidence 777665441111 0000111 223333333333332 25778889999999955 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceecc
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKS 230 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~ 230 (548)
++.+....+...+-...-..+.+..|- +.|.+..+..++..+..+...|+.+++
T Consensus 407 s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr 460 (485)
T KOG0569|consen 407 SVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR 460 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence 888777777666655555666666664 566666666666666666666665444
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.9e-05 Score=79.05 Aligned_cols=326 Identities=13% Similarity=0.049 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHH
Q 008934 59 IFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFG 138 (548)
Q Consensus 59 ~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 138 (548)
..+-.....+..++++.+.|+ +|.|..+.++...+..-...+..- |.+.++++-+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~~------------------------N~y~~yfssa 110 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLFP------------------------NSYYLYFSSA 110 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHhc------------------------chHHHHHHHH
Confidence 566667777888999999999 599999999998877755555431 5678999999
Q ss_pred HHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------cCch-------
Q 008934 139 LMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN--------LGWK------- 203 (548)
Q Consensus 139 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~--------~g~~------- 203 (548)
+.|+|.+..+...-.+.++..++++ +++..++.-...+.+.++|..+...+... .+.+
T Consensus 111 llG~Gaallw~GqG~ylt~~st~~t-------ie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (461)
T KOG3098|consen 111 LLGFGAALLWTGQGGYLTSNSTRET-------IERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVL 183 (461)
T ss_pred HhhhhHHheecccceehhhcCChhh-------HHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchh
Confidence 9999999999888888888888744 66666665555566666664433222211 0110
Q ss_pred -hhh---HHHHHHHHHHH---HHHHhcCCceeccCCCCC--CchhHHHHHHHHHhhccCCCCCcchhhhhhcCCCCcccC
Q 008934 204 -VGF---GVPAVIMLLSA---LSFFLASPFYVKSKANTS--LLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLM 274 (548)
Q Consensus 204 -~~f---~i~~~~~~i~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (548)
..| .+.++...+.. +.......+.....++.+ ...+..+....+++++++... .
T Consensus 184 ~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~ml~L-----------------~ 246 (461)
T KOG3098|consen 184 FIDFEIKVLFGVLLAISVLSIINFDFLPSKDVVNCKSSSETSFSELLKLTFKLLKTPKMLLL-----------------F 246 (461)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhheeecCccchhhhhhhccccHHHHHHHHHHHhcCHhHHHH-----------------H
Confidence 011 11111111111 111111111111111111 222222333333333222110 0
Q ss_pred CcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCC-C-CceecCcccchhhHHHHHHHH
Q 008934 275 PSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVT-P-NFEIPSGSFNIFAILTLTIWI 352 (548)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg-~-~~~i~~~~~~~~~~~~ii~~~ 352 (548)
+......+... +| .......+. . ....+...+..++++.+.+..
T Consensus 247 ~~f~~tG~~~S------------------f~----------------~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~ 292 (461)
T KOG3098|consen 247 PFFFYTGLETS------------------FW----------------ISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGE 292 (461)
T ss_pred HHHHHHHHHHH------------------HH----------------HhccchhhhhhhhccCcchhHHHHHHHHHhHHH
Confidence 00000000000 00 000000000 0 011233455666666665555
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCC--CcccccccchHHHHHHHH
Q 008934 353 GLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINE-GISD--DLRAVVQMSAMWQLPYLV 429 (548)
Q Consensus 353 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~s~~~~i~~~~ 429 (548)
-+.+....++.+|. ++ ++....+.+|.++..++.++...-. +++ +..+ +.....+.+.....+...
T Consensus 293 v~~g~~~~~l~~ri-r~---fg~~~~~~~~~~~~~~~~~li~l~~-------p~dap~~~t~~~~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 293 VIGGLDFSILSKRI-RG---FGRKPTVLIGIIIHLIGFLLIHLSF-------PNDAPLRPTDSPPLLFTPSYYLALIIGF 361 (461)
T ss_pred HHHHHHHHHHhhhh-hh---cccCcchhHHHHHHHHHHHHHhccc-------cccCCCCCCcccccccccchhHHHHHHH
Confidence 55444455545443 33 6777778888877776666543321 111 1111 111112234556677889
Q ss_pred HHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008934 430 LSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNA 479 (548)
Q Consensus 430 l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~ 479 (548)
+.|++.+..+...+.......|. .|.++.+++-+-+++++.++....+.
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~~~-~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLYPD-DRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999954 58899999999999999887777665
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.6e-06 Score=86.72 Aligned_cols=172 Identities=15% Similarity=0.061 Sum_probs=115.2
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.++.......+....++....+.|.|+++.+|+++.+.++.......+..++..+.+++.++. +++|.+.....+..+
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i 296 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV 296 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence 4455555566666777778888889999999999999999998878888888888888876553 555554444444444
Q ss_pred HHHHHHHhcc-cCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 97 GMVLLWSTTI-LPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 97 ~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
+..+...... .+. +.+..+++.++.++|.+...|+..+... .+.+.+ ++++.
T Consensus 297 g~~l~~~~~~~~~~-------------------~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~------~G~a~ 349 (413)
T PRK15403 297 GLALLIVGNLLWPH-------------------VWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP------KGTVS 349 (413)
T ss_pred HHHHHHHHHHHccc-------------------cHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC------CcHHH
Confidence 4444332210 011 3334567788889999998888885433 222222 57777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHH
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 217 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~ 217 (548)
++.+.....+...++...+++.++ +-..+|.+.+++..+..
T Consensus 350 a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~ 390 (413)
T PRK15403 350 ASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIV 390 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHH
Confidence 777777788888888888888765 55777766665444433
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.7e-06 Score=86.83 Aligned_cols=178 Identities=10% Similarity=0.059 Sum_probs=136.9
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhh---cCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREY---NMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---g~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~ 92 (548)
.|.+|...+....-...|+..-...+.|.+..+ +.+....|.+.+.-.+.-.+...+..++.+|+ |.|+.++++..
T Consensus 219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~ 297 (412)
T PF01306_consen 219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGV 297 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHH
Confidence 356666555544445555555566788877543 34556678888888888888999999999995 99999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhH
Q 008934 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (548)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (548)
+.++=..++++++ +++.+.+.+.+-++-.+....+..-++++.+|+ +..+
T Consensus 298 i~~iRi~~~~~~~-----------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~-------rlsA 347 (412)
T PF01306_consen 298 IMAIRIIGSGFAT-----------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDK-------RLSA 347 (412)
T ss_dssp HHHHHHHHHHT-------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-G-------GGHH
T ss_pred HHHHHHHHHhhhc-----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hHHH
Confidence 9888878888766 788899999999999999999999999999998 3356
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcC
Q 008934 173 SYFSWY-YVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLAS 224 (548)
Q Consensus 173 ~~~~~~-~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~ 224 (548)
+.+.+. .....+|.++.+.++|++.|+.|++..|++.+.+++...++..+..
T Consensus 348 t~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l 400 (412)
T PF01306_consen 348 TLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTL 400 (412)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeee
Confidence 777764 4567899999999999999999999999888776665555444443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.6e-06 Score=72.20 Aligned_cols=120 Identities=16% Similarity=0.253 Sum_probs=90.6
Q ss_pred hhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhh
Q 008934 363 ASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQ 442 (548)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~ 442 (548)
.+++.|| .++++.+..+..+..++.+...... +.+.+....++.+++.+...+..
T Consensus 18 ~g~~~d~---~g~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~ 72 (141)
T TIGR00880 18 SGLLTDR---FGRKPVLLVGLFIFVLSTAMFALSS----------------------NITVLIIARFLQGFGAAFALVAG 72 (141)
T ss_pred HHHHHhh---cchhHHHHHHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444 5566677778777777777665543 56777788899999999999999
Q ss_pred hhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 008934 443 TEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLA 522 (548)
Q Consensus 443 ~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~ 522 (548)
+....+..|++.|++++++.+....+|..+++.+.+.+.+.. ++...|+..+.+.++..+..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 73 AALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL----------------GWRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred HHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc----------------chHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999988765311 2345667766666666555544
Q ss_pred h
Q 008934 523 C 523 (548)
Q Consensus 523 ~ 523 (548)
.
T Consensus 137 ~ 137 (141)
T TIGR00880 137 L 137 (141)
T ss_pred c
Confidence 3
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.5e-07 Score=97.01 Aligned_cols=129 Identities=12% Similarity=0.063 Sum_probs=108.9
Q ss_pred HHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHH
Q 008934 359 VLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFN 438 (548)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~ 438 (548)
.+|+.+-+.+| +++++.+.+|..+..++.+..++.. .+|.+.+.-.+.|+||+..
T Consensus 84 ~sPl~gyLadr---yNR~~v~~vG~~iW~~Av~~~~fs~----------------------~Fwq~~l~R~~vGiGeAs~ 138 (493)
T KOG1330|consen 84 ASPLFGYLADR---YNRKRVIAVGIFIWTLAVFASGFSN----------------------HFWQVLLCRGFVGIGEASY 138 (493)
T ss_pred HHHHHHHHHhh---cCcceEEeeHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHhccchhhh
Confidence 66777777777 8888999999999999999998876 7999999999999999999
Q ss_pred hhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 008934 439 MIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 518 (548)
Q Consensus 439 ~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~ 518 (548)
.|..++++.+..|.++||.+.+++++...+|+.+|-.+...+...+. +..+.|+..+++.++..+
T Consensus 139 ~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~---------------~Wr~af~~~avl~vi~~~ 203 (493)
T KOG1330|consen 139 SPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF---------------WWRWAFRGSAVLGVIVGL 203 (493)
T ss_pred cccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc---------------ceEEEEEeehHHHHHHHH
Confidence 99999999999999999999999999999999999888777654331 235678888888887766
Q ss_pred HHHHhhhcc
Q 008934 519 YYLACCKAY 527 (548)
Q Consensus 519 ~~~~~~~~~ 527 (548)
+...+.++.
T Consensus 204 L~~~f~~eP 212 (493)
T KOG1330|consen 204 LVFLFVREP 212 (493)
T ss_pred HHHhhccCc
Confidence 655554433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.5e-06 Score=87.62 Aligned_cols=162 Identities=7% Similarity=0.022 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 008934 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (548)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (548)
....++...++..++..........|.+..+|. +...+.+...+.+...++.+++++++||+ |+|+++..+..+..+.
T Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~ 306 (460)
T PRK11462 229 QWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVI 306 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence 333444445555555554445555554444553 33455677788888999999999999996 9998877655544443
Q ss_pred HHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHH
Q 008934 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (548)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 177 (548)
..+..+.+ . .+...+++..++.|++.+...+...++.+|..+.++-+.+++..+..++.
T Consensus 307 ~~~~~~~~---~------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~ 365 (460)
T PRK11462 307 SLAMFFVP---M------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAG 365 (460)
T ss_pred HHHHHHhc---h------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHH
Confidence 33333221 1 12233344455667777777777788999988854422221223444566
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCc
Q 008934 178 YYVFVSASSIVAVTCIVYIQDNLGW 202 (548)
Q Consensus 178 ~~~~~~ig~~~gp~i~~~l~~~~g~ 202 (548)
......+|.++|+.++|++.+..||
T Consensus 366 ~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 366 TLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6678899999999999988776565
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.34 E-value=3e-05 Score=75.64 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=105.6
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
|-.....+.++.+.. ..|.+ .....-+++++|+|.+|...+.....++..++ ++.|.+.|++ |++.++.+|.+...
T Consensus 2 W~~l~a~~~v~~~~G-t~Y~F-s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~ 77 (250)
T PF06813_consen 2 WLSLVASIWVQLCSG-TTYTF-SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGF 77 (250)
T ss_pred hhhHHHHHHHHHhcC-cccch-hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHH
Confidence 444334444444433 33433 34445678999999999999999999999875 8899999996 99999999999999
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
+|......+.. +.......|.+.+..++.+.|.+....+......+.||++ |+.+.
T Consensus 78 ~GY~~~~l~~~----------------~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~--------RG~vv 133 (250)
T PF06813_consen 78 VGYGLLWLAVS----------------GRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRS--------RGTVV 133 (250)
T ss_pred HHHHHHHHHHh----------------CccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccc--------cCcee
Confidence 99988887651 0111124566666666666666655455555556788853 78888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQD 198 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~ 198 (548)
++.-....+++.+-..+-..+.+
T Consensus 134 gilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 134 GILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred hhhhHHHHhHHHHHHHHHHHHcC
Confidence 88766666666655544444443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.1e-05 Score=75.28 Aligned_cols=153 Identities=17% Similarity=0.203 Sum_probs=113.7
Q ss_pred HHHHhhHHHHHHHHhHhhcCCh--hHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccC
Q 008934 31 MATVGFTPNMILYLCREYNMET--TAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILP 108 (548)
Q Consensus 31 ~~~~~~~~~l~~yl~~~lg~s~--~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~ 108 (548)
..........+.+ ..+++.+. ...+++.+.+.+...++.++.|+++||+ |||+.+..+.....++.++..+..+
T Consensus 16 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~-- 91 (338)
T COG0477 16 LDLGLLSPALPLL-LSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN-- 91 (338)
T ss_pred HhcchHHHHHHHH-HHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc--
Confidence 3433334445555 44555555 5789999999999999999999999997 9998888888765555555555441
Q ss_pred CCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHH-HHHHHHH
Q 008934 109 GAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV-FVSASSI 187 (548)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~ig~~ 187 (548)
...+.+++.|..+|++.+...+...+++.+.+|+ . +.|+...+.... ...+|..
T Consensus 92 -------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~ 146 (338)
T COG0477 92 -------------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A-----TERGLAVGLVTLGAGALGLA 146 (338)
T ss_pred -------------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h-----hHHHHHHHHHHHHHHHHHHH
Confidence 1467888889999999999999999999999987 2 237888888777 5788888
Q ss_pred HHHHHHHHhhhc--cCchhhhHHHHHH
Q 008934 188 VAVTCIVYIQDN--LGWKVGFGVPAVI 212 (548)
Q Consensus 188 ~gp~i~~~l~~~--~g~~~~f~i~~~~ 212 (548)
++|.+++.+... .+|+..|.+....
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (338)
T COG0477 147 LGPLLAGLLLGALLWGWRAAFLLAALL 173 (338)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 888777776654 4788855555443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.4e-05 Score=76.78 Aligned_cols=318 Identities=16% Similarity=0.081 Sum_probs=164.6
Q ss_pred HHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCC
Q 008934 42 LYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG 121 (548)
Q Consensus 42 ~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 121 (548)
.|+...+|+...+.|.+........++...+.|-|+|+- ||||.-. .+++..+++.++--
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracv----tycitYiLsCiTKh--------------- 120 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACV----TYCITYILSCITKH--------------- 120 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-cccccee----eehHHHHHHHHhhc---------------
Confidence 466778999999999998888888888889999999995 9999654 44455555555431
Q ss_pred CcCCCccchHHHHHHHHHHHHhccccccchhhh-hhccCCCCCCCccchhhHHHHHHHH----HHHHHHHHHHHHHHHHh
Q 008934 122 CESATWSQLMPLYFAFGLMSLGSGGIRSSSLAF-GAEQLDKGDGTKSKGALQSYFSWYY----VFVSASSIVAVTCIVYI 196 (548)
Q Consensus 122 ~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~ig~~~gp~i~~~l 196 (548)
+.+.-.++++|.+-|+.++...++.-+. ++|..+.++ -+......-+. ..+.+-++++...+-.+
T Consensus 121 -----SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~-----FeqqWls~TFskA~ffgNglvAiiaGlfgn~l 190 (454)
T KOG4332|consen 121 -----SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRG-----FEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLL 190 (454)
T ss_pred -----CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccC-----ChHhhhhHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 1256679999999999999887776554 333332211 01111111111 11223333344444445
Q ss_pred hhcc--CchhhhHHHHHHHHHHHHHHHhcCC-ceeccCCCCCCchhHHHHHHHHHhhccCCCCCcchhhhhhcCCCCccc
Q 008934 197 QDNL--GWKVGFGVPAVIMLLSALSFFLASP-FYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRL 273 (548)
Q Consensus 197 ~~~~--g~~~~f~i~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (548)
.+.+ |.-.+|-.++....++..+.+-.+. .+-+...+++-+.+..........+++..+.+ .-+.+++...+.
T Consensus 191 vd~~slGPVAPFdAAacfLaigmAvil~~W~ENygdps~~kdlltqf~gaa~aiaSD~ki~LLG-~iqsLFE~smyt--- 266 (454)
T KOG4332|consen 191 VDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGDPSENKDLLTQFKGAARAIASDEKIALLG-AIQSLFEGSMYT--- 266 (454)
T ss_pred HHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhhHHHHHHhhHhHHHHhcchHHHHHH-HHHHHHhhhhhe---
Confidence 5544 5667777666655555544333222 22111111111111111111111111111100 011111110000
Q ss_pred CCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCceecCcccchhhHHHHHHHHH
Q 008934 274 MPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIG 353 (548)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~ 353 (548)
-++. +...++.+ .-++|.+.+.+-.+...++...
T Consensus 267 ----------------------------FVFL---------------WTPaLspn---~e~iPhGfiFatFMlASmLGSS 300 (454)
T KOG4332|consen 267 ----------------------------FVFL---------------WTPALSPN---DEEIPHGFIFATFMLASMLGSS 300 (454)
T ss_pred ----------------------------eeee---------------ecccCCCC---cccCCchhHHHHHHHHHHHhhH
Confidence 0000 01122221 2346666666666666777666
Q ss_pred HHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHH
Q 008934 354 LYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL 433 (548)
Q Consensus 354 l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~ 433 (548)
+..++.. + +. ++...-+.+.+++..+.+.+..... . ..+ .+-+.-.-.+++.++-.
T Consensus 301 la~Rl~s----~---s~--~~ve~ymqivf~vs~a~l~Lpilt~-~-vsP-------------~kes~~~s~i~F~~~E~ 356 (454)
T KOG4332|consen 301 LASRLLS----R---SS--PKVESYMQIVFLVSIAALLLPILTS-S-VSP-------------SKESPSESLIGFCLFEA 356 (454)
T ss_pred HHHHHHh----c---CC--cccchHHHHHHHHHHHHHHHHHHHh-c-cCC-------------CcCCchHHHHHHHHHHH
Confidence 6544432 2 11 3333444444444444333322111 0 011 11133333667788888
Q ss_pred HHHHHhhhhhhhcccccCchhhHHHHHHHH
Q 008934 434 AMAFNMIGQTEFYYTELPKSMSSIASTLSG 463 (548)
Q Consensus 434 g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~ 463 (548)
.-++.+|..+-+-.+..|++.|++.+..+-
T Consensus 357 cvGlfwPSimkmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 357 CVGLFWPSIMKMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred HHhhcchHHHHHHHhhCCHHHHhhhhhhee
Confidence 999999999999999999999998776654
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00011 Score=75.55 Aligned_cols=167 Identities=16% Similarity=0.187 Sum_probs=134.3
Q ss_pred HHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcc
Q 008934 27 AFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTI 106 (548)
Q Consensus 27 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~ 106 (548)
++..++++.-=..+=+|=-+.+|++..++..++..+..+..++....|++..|..+++++..+++....++..+..++..
T Consensus 218 ~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~ 297 (403)
T PF03209_consen 218 FLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP 297 (403)
T ss_pred HHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555556666666899999999999999999999999999999986679999999999988888877776652
Q ss_pred cCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHH
Q 008934 107 LPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS 186 (548)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 186 (548)
..+.+.+..+.+++|+|.|.......+...|..++++ .+..++.+.....++.
T Consensus 298 --------------------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~-------aG~~mG~WGaaQA~A~ 350 (403)
T PF03209_consen 298 --------------------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR-------AGLFMGAWGAAQAIAR 350 (403)
T ss_pred --------------------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc-------hhHHHHHHHHHHHHHH
Confidence 1257889999999999999999999999999998855 6899999999999999
Q ss_pred HHHHHHHHHhhhc----------cCchhhhHHHHHHHHHHHHHH
Q 008934 187 IVAVTCIVYIQDN----------LGWKVGFGVPAVIMLLSALSF 220 (548)
Q Consensus 187 ~~gp~i~~~l~~~----------~g~~~~f~i~~~~~~i~~~~~ 220 (548)
.+|-.++|.+.|. .+|..+|.+-++..++++.+.
T Consensus 351 Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 351 GLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887753 246677777766666555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.2e-05 Score=83.11 Aligned_cols=180 Identities=13% Similarity=0.056 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhH--hhcCCh------hHHHHHHHHHHHHHHHHHHHH----HHHhhccccchHHHHHHH
Q 008934 24 ANEAFERMATVGFTPNMILYLCR--EYNMET------TAATNIIFIWTAATNFLPIVG----ALLADSYVGRYRMIGFGC 91 (548)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~--~lg~s~------~~ag~i~~~~~~~~~~~~~~~----G~laDr~~Grk~~~~~~~ 91 (548)
+..++....+|.+...++.++.. ..+.+. ...+++.+...+...+..++. +++.||+ +..+.+.+|+
T Consensus 279 ~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~ 357 (500)
T PRK09584 279 FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGM 357 (500)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHH
Confidence 33445566677777777777553 112211 224556666665666666666 6666664 7778899999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhh
Q 008934 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (548)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 171 (548)
++..++...+......+. ..+..+.+++.+..+++++|.+...|...+++.+..|+ +.|
T Consensus 358 ~l~~l~f~~l~~~~~~~~--------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~-------~~r 416 (500)
T PRK09584 358 VLCSGAFLVLPLGAKFAN--------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQ-------RLM 416 (500)
T ss_pred HHHHHHHHHHHHHHHhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH-------HHH
Confidence 999999888776652111 01123566788899999999999999999999999999 449
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh----------ccCchhhhHHHHHHHHHHHHHHHhcCC
Q 008934 172 QSYFSWYYVFVSASSIVAVTCIVYIQD----------NLGWKVGFGVPAVIMLLSALSFFLASP 225 (548)
Q Consensus 172 ~~~~~~~~~~~~ig~~~gp~i~~~l~~----------~~g~~~~f~i~~~~~~i~~~~~~~~~~ 225 (548)
+++++.++....+|+.++..+.+.... ..++...|...++..++..++++...+
T Consensus 417 g~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~ 480 (500)
T PRK09584 417 GFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP 480 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887777777776665543211 113566776666655444443443333
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.4e-06 Score=83.63 Aligned_cols=135 Identities=15% Similarity=0.101 Sum_probs=113.3
Q ss_pred HHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHH
Q 008934 354 LYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL 433 (548)
Q Consensus 354 l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~ 433 (548)
+.+.++.|+.+.+.+| .+.+..|.+|+.++..+.+++++.+ +++.++++-.++|+
T Consensus 117 ~~qllvnp~~G~l~~~---iGy~ipm~~Gl~vmf~sTilFafg~----------------------sy~~l~vAR~LQgv 171 (464)
T KOG3764|consen 117 LVQLLVNPFFGNLIDR---IGYKIPMVAGLFVMFLSTILFAFGN----------------------SYPMLFVARSLQGV 171 (464)
T ss_pred HHHHHhcccchhhHHH---hccccHHHHHHHHHHHHHHHHHHcc----------------------hhHHHHHHHHHhhh
Confidence 4455567777777766 7777889999999999999999987 88899999999999
Q ss_pred HHHHHhhhhhhhcccccCchh-hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHH
Q 008934 434 AMAFNMIGQTEFYYTELPKSM-SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTAL 512 (548)
Q Consensus 434 g~~~~~~~~~~~~~~~~P~~~-rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 512 (548)
|.++.+....++..+..|+|. ||.++|+-..+.++|..+||.+.|.+....+ +..-|.+++++
T Consensus 172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G----------------k~aPFlVL~~v 235 (464)
T KOG3764|consen 172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG----------------KSAPFLVLAIV 235 (464)
T ss_pred hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC----------------CcCcHHHHHHH
Confidence 999999999999999998887 5999999999999999999999998775443 34458999999
Q ss_pred HHHHHHHHHHhhhcccc
Q 008934 513 SMANFLYYLACCKAYGP 529 (548)
Q Consensus 513 ~~v~~~~~~~~~~~~~~ 529 (548)
.++...+-++..+.++.
T Consensus 236 ~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 236 LLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHHHHHHHHheeCcccc
Confidence 98887776666555443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.2e-05 Score=81.54 Aligned_cols=178 Identities=13% Similarity=0.129 Sum_probs=116.4
Q ss_pred HHHHHHHHHhhHHHHHHHHhHhhcCCh----hHHHHHHHHHHHHHHHHHHHHHHHhhccccchH-------HHHHHHHHH
Q 008934 26 EAFERMATVGFTPNMILYLCREYNMET----TAATNIIFIWTAATNFLPIVGALLADSYVGRYR-------MIGFGCFTC 94 (548)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~lg~s~----~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~-------~~~~~~~~~ 94 (548)
..+....+......++.|.++..+.+. ....++.+...+...+..|+.|++.||. |+|+ -+.+|+++.
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~ 356 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLC 356 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHH
Confidence 444555566666778888875433321 1234444555566767888889999995 9887 377788777
Q ss_pred HHHHHHHHHhcc-cCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHH
Q 008934 95 LLGMVLLWSTTI-LPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (548)
Q Consensus 95 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (548)
.++......... ... .....+.+++....+++|+|.+...|...+++.+..|++ .++.
T Consensus 357 ~~~~~~~~~~~~~~~~--------------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~-------~~g~ 415 (489)
T PRK10207 357 SLGFLTAAAAGMWFAD--------------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQH-------LMGF 415 (489)
T ss_pred HHHHHHHHHHHHhhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHH-------HHHH
Confidence 777654432110 000 001225677788899999999999999999999999984 4899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh---------cc-CchhhhHHHHHHHHHHHHHHHhcCC
Q 008934 174 YFSWYYVFVSASSIVAVTCIVYIQD---------NL-GWKVGFGVPAVIMLLSALSFFLASP 225 (548)
Q Consensus 174 ~~~~~~~~~~ig~~~gp~i~~~l~~---------~~-g~~~~f~i~~~~~~i~~~~~~~~~~ 225 (548)
++++++...++|..+|..++..... .. .+...|...++..++..++++...|
T Consensus 416 ~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~ 477 (489)
T PRK10207 416 ILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP 477 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877765521 01 2345565555555444444444333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.9e-05 Score=76.19 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=117.8
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|...+-.+..|+---.=-.+-.+++.|+.+..|.+..++....+.+..+.+++..++-++..|+ ...|++.+..+...+
T Consensus 236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~il 314 (422)
T COG0738 236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAIL 314 (422)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHH
Confidence 3333434444444333344558999999988999999999999999999999999999999996 888888877765554
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
-.+...++. + ..-+.+..+.|+..+.++|+..+...+..|++.. .+++.
T Consensus 315 l~~~~~l~~-----------------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts------~~s~~- 363 (422)
T COG0738 315 LLLAVALIG-----------------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS------VGSGL- 363 (422)
T ss_pred HHHHHHHhc-----------------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc------cccee-
Confidence 444444443 2 3344456778999999999999999999996543 33332
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhhhH
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFG 207 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~ 207 (548)
-.+...|+++-|.+.|++.|+.|-...+.
T Consensus 364 --l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 364 --LVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred --eeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 23567899999999999999998777666
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.1e-05 Score=86.90 Aligned_cols=147 Identities=8% Similarity=-0.154 Sum_probs=112.9
Q ss_pred HhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCc
Q 008934 44 LCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCE 123 (548)
Q Consensus 44 l~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 123 (548)
.++.+|+++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++.+++.........-....
T Consensus 279 ~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~------------ 345 (468)
T TIGR00788 279 TTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLA------------ 345 (468)
T ss_pred EcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccc------------
Confidence 3467999999999999999999999999999999995 999999999998888765543211000000
Q ss_pred CCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--
Q 008934 124 SATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG-- 201 (548)
Q Consensus 124 ~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g-- 201 (548)
....+.+.+....++.+++.+........++.+..|++. +++.++++....++|..+++.+++++.++.|
T Consensus 346 -~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~-------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~ 417 (468)
T TIGR00788 346 -FGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC-------ESSVFALLASILHLGSSVSGFLGVLLMETIGIT 417 (468)
T ss_pred -cCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc-------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 000122345555678888888888899999999999865 7999999999999999999999999998877
Q ss_pred ---chhhhHHHHH
Q 008934 202 ---WKVGFGVPAV 211 (548)
Q Consensus 202 ---~~~~f~i~~~ 211 (548)
++..+.+..+
T Consensus 418 ~~~~~~~~~~i~i 430 (468)
T TIGR00788 418 CDNSNNLWLLILG 430 (468)
T ss_pred cccccchHHHHHH
Confidence 6555544333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.5e-05 Score=61.70 Aligned_cols=68 Identities=22% Similarity=0.238 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Q 008934 24 ANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT 93 (548)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 93 (548)
...++...+...+.++++.|++ +.|+|+.+.|.+.++..+...+++++.|+++||+ |++|.+.....+
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~ 74 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence 3455666677788899999977 6999999999999999999999999999999996 998888776554
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.3e-05 Score=84.38 Aligned_cols=167 Identities=7% Similarity=-0.029 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH
Q 008934 24 ANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWS 103 (548)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~ 103 (548)
...++..+..--+..+|--+ .+++|-.++--|.....-..+-.+.-++.+++..|+ |+-|++.++++.+.+=.+.++.
T Consensus 378 ~~av~mG~g~~lv~tFLfWH-led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~ 455 (618)
T KOG3762|consen 378 FVAVVMGAGVGLVFTFLFWH-LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSY 455 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHH
Confidence 34444455555555666445 446776666667555555666667778999999995 9999999999999888777776
Q ss_pred hcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHH-
Q 008934 104 TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV- 182 (548)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~- 182 (548)
.. |+|..+..-+++|+..+..+.++.+++++..|++- |+++.++....-
T Consensus 456 L~-----------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l-------~at~Q~l~~g~f~ 505 (618)
T KOG3762|consen 456 LQ-----------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL-------RATAQGLLQGIFH 505 (618)
T ss_pred hc-----------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc-------hHHHHHHHHHHhc
Confidence 55 88999999999999999999999999999999954 788888876554
Q ss_pred HHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHh
Q 008934 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 183 ~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~ 222 (548)
.+|-.+|.+++|.+.+.+|-+..|.++++..++.++.+..
T Consensus 506 GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 506 GLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred ccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999899999888776665554443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0002 Score=75.63 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=93.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCc
Q 008934 373 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 452 (548)
Q Consensus 373 ~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~ 452 (548)
.+.++.+.++.+...+..+++.+.. +.+.+.+.-++.|++|+... +.+.++++..|+
T Consensus 89 lG~K~vL~l~~l~Wsl~t~L~~fa~----------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~ 145 (511)
T TIGR00806 89 LRYKPVLVLQALSFVCVWLLLLLGT----------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP 145 (511)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH
Confidence 6677888999999999998888876 78889999999999999999 999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 008934 453 SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACC 524 (548)
Q Consensus 453 ~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~ 524 (548)
++|++++|.++.+..+|.++++.+.+.+.. -+|- .|....++..+...+++++.+++.
T Consensus 146 kER~ratsi~~sg~~vG~~Ia~~L~qll~s-------~gWr-------~y~~Ln~Isl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 146 SRYQRAAAYSRAAVLLGVFLSSVLGQLLVT-------LGWI-------SYSTLNIISLVFMTFSVFLALFLK 203 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCch-------hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999888331 1453 234444454555555666666665
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00019 Score=76.97 Aligned_cols=206 Identities=12% Similarity=0.030 Sum_probs=140.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHh-hcCChh------HH---H-HHHHHHHHHHHHHHHHHHHHhhccc
Q 008934 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCRE-YNMETT------AA---T-NIIFIWTAATNFLPIVGALLADSYV 81 (548)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-lg~s~~------~a---g-~i~~~~~~~~~~~~~~~G~laDr~~ 81 (548)
+..+|.++.+..++++..++++.+..+.+.|+.++ +|-++. +. | +....+.+.+.+.+++--++.+|+
T Consensus 254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~- 332 (477)
T TIGR01301 254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW- 332 (477)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 34468888899999999999999999999998863 443321 11 2 334445555556666777889985
Q ss_pred cc-hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCC
Q 008934 82 GR-YRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLD 160 (548)
Q Consensus 82 Gr-k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~ 160 (548)
|+ |++..++.++.++++....+..+++.=..+ .|.......++....+..++...+.|+..+.....-.+++++..+
T Consensus 333 g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~ 410 (477)
T TIGR01301 333 GAGKRLWGIVNIILAICLAATVLVTYVAKNSRY--YDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSS 410 (477)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcc
Confidence 95 677788888888877777644321100000 000000000111124667777888999999999999999999999
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--chhhhHHHHHHHHHHHHHHHhcCCc
Q 008934 161 KGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG--WKVGFGVPAVIMLLSALSFFLASPF 226 (548)
Q Consensus 161 ~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g--~~~~f~i~~~~~~i~~~~~~~~~~~ 226 (548)
+++ ++.|..+++.+.+..+..++.....|.+.+..| -.+.+.+.++.++++.+..+...|+
T Consensus 411 ~~~-----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 411 NLG-----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred ccC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 643 236899999999999999988877777555444 5667777888888887777666554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.011 Score=61.66 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=108.3
Q ss_pred HHHHHHHhHh-hcCChhHHH-HHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCc
Q 008934 38 PNMILYLCRE-YNMETTAAT-NIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPAC 115 (548)
Q Consensus 38 ~~l~~yl~~~-lg~s~~~ag-~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 115 (548)
|++..|+.+. .|++..|.. -+.-+++-......++...+.|. +|.|.+++++.+...+...++....
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~---------- 92 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGT---------- 92 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHC----------
Confidence 6899999987 999999887 55666777777888899999998 5999999998887777766666655
Q ss_pred ccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008934 116 DQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY 195 (548)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~ 195 (548)
+...+-+..+.-|++.+. -.+..+++=..+|+ ++-.++.++.....-+|-.++..++-.
T Consensus 93 -------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~-------~~yq~vts~~raa~l~g~~~s~~lgQl 151 (412)
T PF01770_consen 93 -------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDK-------EHYQKVTSYTRAATLVGRFISSLLGQL 151 (412)
T ss_pred -------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777766665 34444555555554 335666777666666776777666665
Q ss_pred hhh--ccCchhhhHHHHHHHHHHHHHHHhc
Q 008934 196 IQD--NLGWKVGFGVPAVIMLLSALSFFLA 223 (548)
Q Consensus 196 l~~--~~g~~~~f~i~~~~~~i~~~~~~~~ 223 (548)
+.. ..++...+++......+++++.++.
T Consensus 152 lvs~~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 152 LVSFGGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 554 3457777777766666666654443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.8e-05 Score=80.13 Aligned_cols=164 Identities=15% Similarity=0.073 Sum_probs=103.4
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccchHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY---VGRYRMIGFGCFT 93 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~---~Grk~~~~~~~~~ 93 (548)
..+|...+..++.....|++..++|.|+++..|+|..+++.+...+.++..++.+++|+++||. ..+|..+.....+
T Consensus 273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~ 352 (495)
T KOG2533|consen 273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL 352 (495)
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3456677788889999999999999999987789999999999999999999999999999992 1555555555544
Q ss_pred HHH-HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhH
Q 008934 94 CLL-GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (548)
Q Consensus 94 ~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (548)
+.. +...+.... .......+......+.....++......+....+. +|-
T Consensus 353 ~~~~g~~~l~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~------k~~ 403 (495)
T KOG2533|consen 353 YAIIGAISLLAAA-----------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT------KAL 403 (495)
T ss_pred HHHHHHHHHHhhc-----------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH------HhH
Confidence 333 323333222 12223332333334444444555555566665433 244
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhhccCchhhhHHH
Q 008934 173 SYFSWYYVFVSAS-SIVAVTCIVYIQDNLGWKVGFGVP 209 (548)
Q Consensus 173 ~~~~~~~~~~~ig-~~~gp~i~~~l~~~~g~~~~f~i~ 209 (548)
+..+..-.+.+.+ .+.+++.-+.....++|...|.+.
T Consensus 404 ~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 404 TTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred HHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 4444444444433 333443444444556788888443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00016 Score=80.80 Aligned_cols=111 Identities=11% Similarity=-0.021 Sum_probs=79.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHH--HH-----------hhhcCCCCCc---------------cccc-ccchHH
Q 008934 373 LSLKLRMGIGLLFSTASMTAWAIVEAARR--SI-----------AINEGISDDL---------------RAVV-QMSAMW 423 (548)
Q Consensus 373 ~~~~~~~~iG~~l~~i~~~~~~~~~~~~~--~~-----------~~~~~~~~~~---------------~~~~-~~s~~~ 423 (548)
.++++.+.+|.++++++.++.+..+-... +. ...+..+... ++.. ...+..
T Consensus 95 ~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (633)
T TIGR00805 95 LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLL 174 (633)
T ss_pred cCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehh
Confidence 55667889999999999988766531100 00 0000011000 0000 113455
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008934 424 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDI 483 (548)
Q Consensus 424 ~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~ 483 (548)
++++-++.|+|++...+....++.+.+|++.|+.+.|+.+....+|..+|+.+.+.+.+.
T Consensus 175 ~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 175 FLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred hHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 678999999999999999999999999999999999999999999999999999887653
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0018 Score=70.75 Aligned_cols=192 Identities=15% Similarity=0.105 Sum_probs=104.7
Q ss_pred CcchHHHHHHHHHHHHHH-HHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Q 008934 15 GLRTLPFIIANEAFERMA-TVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT 93 (548)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 93 (548)
.+|.........++..++ +..+..+.+.. -+..|.+... .+...+..+...++..++.++.||+ |||+.++.+...
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i-f~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~ 368 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTI-FKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG 368 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHH-HHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence 345555555555555444 44455555555 5566666543 4455556667777778889999996 999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHH
Q 008934 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (548)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (548)
+.++.++++.......... ..........+....+....-..+..|....+.+|.+|. +.|++
T Consensus 369 m~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~-------~~r~~ 431 (513)
T KOG0254|consen 369 MSICLVILAVVGVFALYYP----------NSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL-------RLRSK 431 (513)
T ss_pred HHHHHHHHHHHHHHhccCC----------CcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH-------hHHhh
Confidence 9999888886542111000 000111122222222223333333345666788999998 44777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHH-HHHhcCCc
Q 008934 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL-SFFLASPF 226 (548)
Q Consensus 174 ~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~-~~~~~~~~ 226 (548)
+.++......+...+-......+.+..++...|...+....+... ..++..|+
T Consensus 432 ~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pE 485 (513)
T KOG0254|consen 432 GASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPE 485 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEccc
Confidence 777755444333332222222222332334556555555444444 34444444
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00095 Score=71.93 Aligned_cols=125 Identities=10% Similarity=0.071 Sum_probs=87.4
Q ss_pred hhhhhcCCCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhh
Q 008934 362 LASKIKGKPCQL-SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMI 440 (548)
Q Consensus 362 ~~~~~~~~~~~~-~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~ 440 (548)
..+.+.|| . ++++.+.+|.++.+++.+.+.... .+...+.....+..+|.++..+
T Consensus 64 igG~LaDR---ilGrrr~iliG~il~~lg~lll~~~~---------------------~~~~~~~l~l~li~iG~G~~~~ 119 (493)
T PRK15462 64 LGGFLADK---VLGNRMAVMLGALLMAIGHVVLGASE---------------------IHPSFLYLSLAIIVCGYGLFKS 119 (493)
T ss_pred HHHHHHHH---ccCcHHHHHHHHHHHHHHHHHHHHhh---------------------cchhHHHHHHHHHHHhcccccc
Confidence 34445555 5 667788899999888876554321 0122344455566677788778
Q ss_pred hhhhhcccccCch--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 008934 441 GQTEFYYTELPKS--MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 518 (548)
Q Consensus 441 ~~~~~~~~~~P~~--~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~ 518 (548)
...+++.+..|++ +|+.+.++.+...++|+.++|.+.+.+.... ++++.|...++.++++++
T Consensus 120 ~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~----------------Gw~~~F~iaaigm~l~li 183 (493)
T PRK15462 120 NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY----------------SWAMGFGLAAVGMIAGLV 183 (493)
T ss_pred cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh----------------ChHHHHHHHHHHHHHHHH
Confidence 7888888888875 7999999999999999999999999875321 246677777666677766
Q ss_pred HHHHhhhc
Q 008934 519 YYLACCKA 526 (548)
Q Consensus 519 ~~~~~~~~ 526 (548)
.++...++
T Consensus 184 ~~~~~~~~ 191 (493)
T PRK15462 184 IFLCGNRH 191 (493)
T ss_pred HHHHhhhh
Confidence 66544433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.13 Score=54.42 Aligned_cols=390 Identities=14% Similarity=0.046 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Q 008934 20 PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99 (548)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~ 99 (548)
+.+....++.+..-=+.-.-.++|+.+-+.=+.--+...-.+-.+...+..+.-|...||. -|.|++..+++..-++..
T Consensus 5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv~ 83 (432)
T PF06963_consen 5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSVA 83 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHHH
Confidence 4444445555555445556677787766654555555555666777788889999999996 999999998887555433
Q ss_pred HHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHH-HHhccccccchhhhhhccCCCCCCCccchhhHHHHHHH
Q 008934 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLM-SLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (548)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 178 (548)
+....-.......+. ...+......++....+. .+..=.......+.=-|++..-.+++ +..+.+..+..
T Consensus 84 ~s~~~~~~l~~~~~~--------~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~-~~~La~~NA~m 154 (432)
T PF06963_consen 84 ASCALFLLLLSYPSS--------SSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGD-PGALARMNATM 154 (432)
T ss_pred HHHHHHHHHHhCCcc--------ccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCC-hhhHHHHHHHH
Confidence 332211000000000 000011111222221122 12221222222233334433211101 14466666554
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcC-------CceeccCCCCCCchhHHHHHHHHHhhc
Q 008934 179 YVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLAS-------PFYVKSKANTSLLPGLTQVLVASFKNR 251 (548)
Q Consensus 179 ~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (548)
.-.=.+.-++||.+.|.+.+..|......+.++.-+++...=++.. |+...+++.++....
T Consensus 155 RRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~------------ 222 (432)
T PF06963_consen 155 RRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESS------------ 222 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccccc------------
Confidence 4444678899999999998888877776666555555544222111 221111111000000
Q ss_pred cCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHH--HHHH-HHHHH------
Q 008934 252 RTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQV--EELK-ALIKA------ 322 (548)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~------ 322 (548)
+ +.+ +...... .. ....-+...... ....|..|..|.+ ...- .++..
T Consensus 223 -----~-~~~---~~~~~~~--~~-~~~~~~~~~~~~------------~~~~w~~Y~~q~vflas~alalLY~TVLsf~ 278 (432)
T PF06963_consen 223 -----S-DEE---SSSESSS--DP-SILKRLWNPLRT------------IIRGWRTYFRQPVFLASFALALLYFTVLSFG 278 (432)
T ss_pred -----c-ccc---ccccccc--hh-hHHHHHHHHHHH------------HhccHHHHHhCHHHHHHHHHHHHHHHHhcCc
Confidence 0 000 0000000 00 000000000000 0012222221110 0000 00000
Q ss_pred hhccCCCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008934 323 SSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRS 402 (548)
Q Consensus 323 ~~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~ 402 (548)
..+..++ .+-++++..+..+-.+..+. .+...+++|.+.| | .++.+--.+++.....+.......--
T Consensus 279 ~lmt~yl-~~~G~s~~~igi~R~~gav~--Gl~gT~~~p~l~~---r---iGlvr~G~~~l~~q~~~L~~~v~~~~---- 345 (432)
T PF06963_consen 279 GLMTAYL-KSQGYSPSVIGIFRGLGAVF--GLLGTWVYPWLMK---R---IGLVRAGLWSLWWQWVCLALCVVSFW---- 345 (432)
T ss_pred HHHHHHH-HHCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHH---H---hcchhhHHHHHHHHHHHHHHHHHHHh----
Confidence 0000000 01124444444443333222 2334446666654 3 55556666676665555544332210
Q ss_pred HhhhcCCCCCcccc-cccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008934 403 IAINEGISDDLRAV-VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIM 477 (548)
Q Consensus 403 ~~~~~~~~~~~~~~-~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~ 477 (548)
. . +.+ ...+...++.+.++.=+|--......+-+..+.+|+++||..+|+-+..+++-..+--.++
T Consensus 346 -~-------~-~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 346 -A-------P-GSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred -c-------C-CCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 111 2346667777888888888888999999999999999999999999998888877655553
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0014 Score=71.69 Aligned_cols=163 Identities=11% Similarity=0.021 Sum_probs=116.2
Q ss_pred CccccccCCCCCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChh---HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008934 3 TEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETT---AATNIIFIWTAATNFLPIVGALLADS 79 (548)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~---~ag~i~~~~~~~~~~~~~~~G~laDr 79 (548)
++|+.+.+..+. .|.+...+.+.++..+.+|++..+.|......++-++. +++++...+.++..++.++.|.+..+
T Consensus 297 ~~Pl~P~~Lf~~-~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ 375 (599)
T PF06609_consen 297 KDPLFPHRLFKD-RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSK 375 (599)
T ss_pred CCCcCCHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHH
Confidence 467777665543 46777777888999999999999999888888877663 67888888888899999999999987
Q ss_pred cccchHHH-HHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhcc
Q 008934 80 YVGRYRMI-GFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQ 158 (548)
Q Consensus 80 ~~Grk~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~ 158 (548)
. +|-|-. +++..+++++..+++... |. +....+...++.|+|.|...........-.
T Consensus 376 i-r~~Kw~li~~~~~~ta~~Gama~~~--~~-------------------n~~~~i~~~~l~g~giG~~~~~~~~~~ql~ 433 (599)
T PF06609_consen 376 I-RHIKWQLIFGSVLMTAFCGAMAAVR--PD-------------------NKNAAIAFLVLAGFGIGGILVPAIVIAQLI 433 (599)
T ss_pred c-cchhHHHHHHHHHHHHHHHHHHHcc--CC-------------------CcchHHHHHHHHHHhHHHHHHHHHHeeEee
Confidence 5 775544 567667766555555432 11 222233445677788888766666665555
Q ss_pred CCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008934 159 LDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY 195 (548)
Q Consensus 159 ~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~ 195 (548)
.|+++ .+.+.++......+|+.+|..+-.-
T Consensus 434 ~p~~~-------ig~a~gL~~s~R~~GGsIg~aIy~~ 463 (599)
T PF06609_consen 434 VPDED-------IGTATGLTGSIRSIGGSIGYAIYNA 463 (599)
T ss_pred eCchH-------HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 66633 8999999888889998888765443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.53 E-value=4.6e-07 Score=96.86 Aligned_cols=184 Identities=14% Similarity=0.152 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 008934 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (548)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (548)
.....+....+..+..+....+...++.+..+.+.. -.......+...++.+++.++.||+ |||++++++.+..++.
T Consensus 253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~ 329 (451)
T PF00083_consen 253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC 329 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence 344444444445444444444455555667777777 2233344455667777888999995 9999999998887777
Q ss_pred HHHHH-HhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhcc-ccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 98 MVLLW-STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSG-GIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 98 ~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
...+. .....+. .....+.. .++...+...+.+ +..+....+.+|.+|.+. |+++.
T Consensus 330 ~~~~~~~~~~~~~--------------~~~~~~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~-------R~~~~ 387 (451)
T PF00083_consen 330 SLILGIIFFLGVS--------------SSSWWSIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPTKV-------RSTGI 387 (451)
T ss_pred ccccccccccccc--------------cccccccc-cceeeeeccccccccccccccccccccccccc-------ccccc
Confidence 66664 1110010 00000111 1222222222222 334566688899999954 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCc
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~ 226 (548)
++.+....+++.++|.+...+.+..+-...|.+.+++.++..+..+...|+
T Consensus 388 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpE 438 (451)
T PF00083_consen 388 GLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPE 438 (451)
T ss_pred ccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEee
Confidence 999998999999999888888777664555666666555555554444444
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.21 Score=53.58 Aligned_cols=169 Identities=8% Similarity=-0.013 Sum_probs=102.4
Q ss_pred CcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcC-----ChhHHHHHHHHHHHHHHHH-HHHHHHHhhccccchHHHH
Q 008934 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNM-----ETTAATNIIFIWTAATNFL-PIVGALLADSYVGRYRMIG 88 (548)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~-----s~~~ag~i~~~~~~~~~~~-~~~~G~laDr~~Grk~~~~ 88 (548)
.+|.+..+....++-.+.|+..- =+.+.+.. +.....++.+...+.+.+. .++-+++++|+ +|+|++.
T Consensus 5 E~~k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~ 78 (472)
T TIGR00769 5 ELKKFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFY 78 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHH
Confidence 35666666666666666665333 24666666 3356667766665665555 78899999996 9999999
Q ss_pred HHHHHHHHHHHHHHHhcccCC--CCCC--CcccccCCCcCCC-----ccchHHHHHHHHHHHHhcccccc-chhhhhhcc
Q 008934 89 FGCFTCLLGMVLLWSTTILPG--AKPP--ACDQLRNGCESAT-----WSQLMPLYFAFGLMSLGSGGIRS-SSLAFGAEQ 158 (548)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~--~~~~--~~~~~~~~~~~~~-----~~~~~~~~i~~~l~g~g~g~~~~-~~~~~~~~~ 158 (548)
+....+.....++++.- .|. ...| .||+.-.+....- ..+.|...+......+=.....+ ..++++.|.
T Consensus 79 ~~~~~F~~~f~lF~~vl-~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi 157 (472)
T TIGR00769 79 TVISPFLGFFALFAFVI-YPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQI 157 (472)
T ss_pred HHHHHHHHHHHHHHHHH-hcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 87777776666655442 111 1000 0111100000000 00122222222233333334444 668999999
Q ss_pred CCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008934 159 LDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ 197 (548)
Q Consensus 159 ~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~ 197 (548)
++.++ -.|.+++++.+.|+|.++++.+..++.
T Consensus 158 ~t~~q-------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 158 TTIDE-------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred CCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99844 688999999999999999999988876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0013 Score=72.23 Aligned_cols=123 Identities=13% Similarity=0.104 Sum_probs=87.6
Q ss_pred hhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhh
Q 008934 363 ASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQ 442 (548)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~ 442 (548)
.+.+.+| +++++.+.+|.++.+++.++.+.... + ....+.+.+.+..++.|+|++..++..
T Consensus 81 ~G~L~Dr---~G~R~vllig~ll~~iG~ll~ala~~---------~-------~i~~s~~~l~l~r~l~G~G~~~~~~~~ 141 (591)
T PTZ00207 81 YSFIYDY---LGPRPIFVLSMTVFCLGTLLFALTFQ---------E-------VIEGSVVRLSVYNGLMTLGCMLFDLGA 141 (591)
T ss_pred HHHHHHH---hCcHHHHHHHHHHHHHHHHHHHHHhc---------c-------cccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566 78888999999999999988877520 0 011368888888999999999998888
Q ss_pred hhhcccccCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 008934 443 TEFYYTELPKSMSSIASTLSGAGLSAANLVASLI-MNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL 521 (548)
Q Consensus 443 ~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~ 521 (548)
.....+..| +.||.+.|+.....++|+++.+.+ ...+.. +....|++.+++.++..++.+
T Consensus 142 ~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~------------------~~~~~fl~l~vl~~vv~ll~~ 202 (591)
T PTZ00207 142 VVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD------------------NTSAYFFFLMSFALVVGILAI 202 (591)
T ss_pred HHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hHHHHHHHHHHHHHHHHHHHH
Confidence 888888887 569999999999999999864444 333321 124556666666655544444
Q ss_pred Hh
Q 008934 522 AC 523 (548)
Q Consensus 522 ~~ 523 (548)
..
T Consensus 203 ~~ 204 (591)
T PTZ00207 203 VF 204 (591)
T ss_pred hh
Confidence 43
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0024 Score=51.12 Aligned_cols=67 Identities=12% Similarity=0.046 Sum_probs=59.1
Q ss_pred HHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhc
Q 008934 37 TPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTT 105 (548)
Q Consensus 37 ~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~ 105 (548)
++.+ +.++++.++|.++++++.+...+++.++.+...++.++. .+++.+..+++...+....+++..
T Consensus 12 TplL-P~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 12 TPLL-PLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HhHh-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444 466889999999999999999999999999999999995 888999999999888888888765
|
Note that many members are hypothetical proteins. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.3 Score=51.08 Aligned_cols=60 Identities=15% Similarity=0.052 Sum_probs=50.7
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008934 420 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNA 479 (548)
Q Consensus 420 s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~ 479 (548)
+.|.+++..+..|+-.+.........+.++.|++.|-.++|.....-++|..++..+.-.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567677777778888888888888888899999999999999999999988888877544
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00039 Score=72.20 Aligned_cols=179 Identities=16% Similarity=0.093 Sum_probs=120.3
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHH--------HHHHHHHHHHH-HHHHHHHHhhccccchHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATN--------IIFIWTAATNF-LPIVGALLADSYVGRYRMI 87 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~--------i~~~~~~~~~~-~~~~~G~laDr~~Grk~~~ 87 (548)
|..+-.....|...+++|+...+...-++ .+|+.+.+.-. ...+...+..+ +-.++.++.|+. |||+.-
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence 55555666788888999999888877655 55665544333 11222222222 445667789995 999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccc-hHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCc
Q 008934 88 GFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQ-LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTK 166 (548)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 166 (548)
+.|.+++++....++...+. ++ +... ....-+..++..+|=+ .+.-..-+|.+|.
T Consensus 382 ~~GF~~~~i~~~~~~~~y~~---------------~~-~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FPa----- 437 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYNQ---------------LE-NTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPA----- 437 (538)
T ss_pred HhhHHHHHHHHHHHcCCccc---------------cc-ccCceeehHHHHHHHHhcCCC---ceeEEeehhhchH-----
Confidence 99999998887777643310 11 1111 1222222333333333 3444556889998
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccCchhhhHHHHHHHHHHHHHHHhc
Q 008934 167 SKGALQSYFSWYYVFVSASSIVAVTCIVYIQD-----NLGWKVGFGVPAVIMLLSALSFFLA 223 (548)
Q Consensus 167 ~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~-----~~g~~~~f~i~~~~~~i~~~~~~~~ 223 (548)
+.|+...++.....=+|+++|.....++.+ ..|.+.+|++.+.+.+++.+..++.
T Consensus 438 --rvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 438 --RVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI 497 (538)
T ss_pred --HHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence 569999999999999999999999999988 6788999999988888777765543
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00044 Score=71.76 Aligned_cols=167 Identities=12% Similarity=0.059 Sum_probs=121.7
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccchHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY---VGRYRMIGFGCFT 93 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~---~Grk~~~~~~~~~ 93 (548)
+....+..+.+.-.+.+-.=..++++|++ ++|.+-.-.+.+-...-+...+.+|+.|..+||. +||||.++....+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 44455555666667777777788999976 8999999888888888889999999999999974 6999988876654
Q ss_pred -HHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhH
Q 008934 94 -CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (548)
Q Consensus 94 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 172 (548)
.+++..+...++.+-..+ |++-+ +..-......++++.-+.=+.....+...-++.+|....++. ++|
T Consensus 111 ~i~~~l~Lig~aaDig~~l---gd~~~---~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~----~~~- 179 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLL---GDNER---KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK----KTR- 179 (498)
T ss_pred HHHHHHhhhhhHhhhhHHh---cCCcc---cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh----hhc-
Confidence 555666666665443322 22211 111223455667777777788888899999999999987663 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 008934 173 SYFSWYYVFVSASSIVAVTCIVYI 196 (548)
Q Consensus 173 ~~~~~~~~~~~ig~~~gp~i~~~l 196 (548)
+.+++.....+|..+|..++++.
T Consensus 180 -Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 180 -ANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred -cchhHHHHHHhcceeeeeccccc
Confidence 89999999999999998877743
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0074 Score=61.53 Aligned_cols=152 Identities=10% Similarity=0.069 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHH-hHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccc-chHHHHHHHHHHH
Q 008934 18 TLPFIIANEAFERMATVGFTPNMILYL-CREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVG-RYRMIGFGCFTCL 95 (548)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~G-rk~~~~~~~~~~~ 95 (548)
+++..+....+.....|....+...++ ...+|+++.|.|-+.+...+...+.+..-....||..| -+-++..++.+..
T Consensus 261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v 340 (451)
T KOG2615|consen 261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV 340 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence 445555555555555555555556665 45799999999998888888888888888888888633 3455566666666
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
-..+++..+. ....+..+..+-.+..+...++...++....|+++ |+.+.
T Consensus 341 P~~llls~~~-----------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q-------rG~~~ 390 (451)
T KOG2615|consen 341 PAFLLLSLAR-----------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ-------RGTLN 390 (451)
T ss_pred HHHHHHhccc-----------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc-------chHHH
Confidence 6666666544 34568888889999999999999999999999955 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDN 199 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~ 199 (548)
|+......++=++||.++|.+..+
T Consensus 391 Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 391 GIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HHHHHHHHHHHHhhhhhhheeEEE
Confidence 999999999999999999887653
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.014 Score=62.34 Aligned_cols=128 Identities=16% Similarity=0.183 Sum_probs=106.7
Q ss_pred HHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHH-HHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCccc
Q 008934 39 NMILYLCREYNMETTAATNIIFIWTAATNFLPIVGA-LLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQ 117 (548)
Q Consensus 39 ~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G-~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 117 (548)
.+..|+...+++++.+.+...+..+....+++.+.. .+.-. +|-|+++..|++...+.....+++.
T Consensus 263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~~------------ 329 (463)
T KOG2816|consen 263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFAT------------ 329 (463)
T ss_pred EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHhc------------
Confidence 447788889999999999999999999999998888 66666 6999999999999999999999876
Q ss_pred ccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008934 118 LRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ 197 (548)
Q Consensus 118 ~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~ 197 (548)
+.|.......+. ...+...|...++++.+.++++ +++++++......+.++++|.+-+.+.
T Consensus 330 -----------~~w~~~~~~v~~-~~~~~~~pa~~s~~s~~v~~~e-------~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 330 -----------ETWMMFAAGVVV-ALAGIVFPAIRAFASILVSPEE-------QGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred -----------cchhhhHHHHHH-HhhcchhHHHHhHHHhhccccc-------ccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 555656655444 4445668999999999999855 899999999999999999999877665
Q ss_pred h
Q 008934 198 D 198 (548)
Q Consensus 198 ~ 198 (548)
.
T Consensus 391 ~ 391 (463)
T KOG2816|consen 391 A 391 (463)
T ss_pred H
Confidence 3
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.056 Score=48.85 Aligned_cols=106 Identities=10% Similarity=0.172 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHH
Q 008934 59 IFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFG 138 (548)
Q Consensus 59 ~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 138 (548)
..+......+..+++..+.++ +|.|+.+.+|.+.+.+-..... -. +.+.++++-+
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~-~~-----------------------~~~~l~~~s~ 97 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFF-YP-----------------------NSYTLYPASA 97 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH-hh-----------------------hHHHHHHHHH
Confidence 444555566666778888898 5999999999988776433332 22 5678899999
Q ss_pred HHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008934 139 LMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI 196 (548)
Q Consensus 139 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l 196 (548)
+.|+|.+..+.+...++.+..+++ +|++-.+++....+.+.++|..+.-.+
T Consensus 98 l~G~~~a~lW~aqg~ylt~~s~~~-------~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 98 LLGFGAALLWTAQGTYLTSYSTEE-------TIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHhhhhHHhhHhhhHHHHHcCCHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877763 377888887777777777776554443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.016 Score=60.34 Aligned_cols=183 Identities=15% Similarity=0.071 Sum_probs=106.0
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
+++.+++....+....+|+....+-.- ...-|++...+|++.....++++++..++|.++||...-|+++++......+
T Consensus 266 ~~F~il~~~ygi~~g~F~~l~~~l~~~-l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v 344 (480)
T KOG2563|consen 266 RQFIILAICYGIGLGLFNSLSTLLNLA-LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALV 344 (480)
T ss_pred ccHHHHHHHHhhhHHHHHHHHHHhhhc-cccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 445555555555555555554444322 2245777789999999999999999999999999973445555555555444
Q ss_pred H-HHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 97 G-MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 97 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
+ +.+...+. .+ ...+.+.....+.|....+..|.-.-+..|..=|..+ +.-.
T Consensus 345 ~~~~l~~~t~-~~-------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~tSs 397 (480)
T KOG2563|consen 345 GTLMLLTCTL-FL-------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------GTSS 397 (480)
T ss_pred HHHHHHHhhc-cC-------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------cccc
Confidence 4 22332222 11 1334455556677777777788888777776544332 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC---chh-hhHHHHHHHHHHHHHHHhcCCce
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLG---WKV-GFGVPAVIMLLSALSFFLASPFY 227 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g---~~~-~f~i~~~~~~i~~~~~~~~~~~~ 227 (548)
|+.....++-+++-..+-+...+.++ |.. .-+.......+.+++..+.++.+
T Consensus 398 Gll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y 453 (480)
T KOG2563|consen 398 GLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDY 453 (480)
T ss_pred eeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhH
Confidence 55555556555555556666666555 333 33333344444444444444443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.71 Score=47.45 Aligned_cols=156 Identities=15% Similarity=0.166 Sum_probs=89.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhh-----ccccchHHHH
Q 008934 14 GGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLAD-----SYVGRYRMIG 88 (548)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laD-----r~~Grk~~~~ 88 (548)
+..+.+..+++..++...-+ |...-+|..++ .-|.|-++.+.... ...=.-.-+++..+.| |+ ||||..+
T Consensus 28 ~d~~~illLl~LYllQGiP~-GL~~~iP~lL~-ak~vSyt~~a~fS~--ay~P~sLKllWaPiVDs~y~k~~-GrrksWv 102 (510)
T KOG3574|consen 28 GDRSSILLLLFLYLLQGIPL-GLIGAIPLLLQ-AKGVSYTSQAIFSF--AYWPFSLKLLWAPIVDSVYSKRF-GRRKSWV 102 (510)
T ss_pred hhhhhHHHHHHHHHHcCCch-hHhhhhHHHhc-CCCcchhhhhhhhh--hhhHHHHHHHHHhhhHHHHHHhh-cccccee
Confidence 33466777777777776654 45555555544 77888887764432 2233345677888888 85 9999766
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccc
Q 008934 89 FGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSK 168 (548)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 168 (548)
+=. -+.+|.....++.-.+..+.+. .+..+...+....++..+..+.---++-.....+..+++
T Consensus 103 vp~-q~llG~~mllLs~~v~~~~g~n----------g~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~----- 166 (510)
T KOG3574|consen 103 VPC-QYLLGLFMLLLSYLVDRGLGGN----------GGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN----- 166 (510)
T ss_pred eeh-HHHHHHHHHHHhhCCCcccccC----------CCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh-----
Confidence 522 2223333343333222211110 011123333334555666666666667777777777744
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 008934 169 GALQSYFSWYYVFVSASSIVAVTC 192 (548)
Q Consensus 169 ~~r~~~~~~~~~~~~ig~~~gp~i 192 (548)
.+.+......+.+.|..+|..+
T Consensus 167 --lgyaST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 167 --LGYASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred --cCchhHHHHHHHhhhHHhhcce
Confidence 6777777777778887777654
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.16 Score=55.47 Aligned_cols=149 Identities=13% Similarity=-0.004 Sum_probs=91.0
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCC
Q 008934 46 REYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESA 125 (548)
Q Consensus 46 ~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (548)
..+|.+..-...+... .........+.+.|+. |||.....+.++..++.+...... .
T Consensus 346 ~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~~~~~~~~---~---------------- 402 (521)
T KOG0255|consen 346 SGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGLLLFGWLP---D---------------- 402 (521)
T ss_pred hhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHhh---c----------------
Confidence 3455554433333222 4445555668999996 999999999999888888887654 1
Q ss_pred CccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhh
Q 008934 126 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVG 205 (548)
Q Consensus 126 ~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~ 205 (548)
..+.+...+...+...+.+........+.+|.+|+ ..|..+.+.......+|++++|.+...... +.....
T Consensus 403 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt-------~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~ 473 (521)
T KOG0255|consen 403 -DLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPT-------VVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLG 473 (521)
T ss_pred -cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccch
Confidence 00111222223333344444445558888999998 459999999999999999999987655544 333334
Q ss_pred hHHHHHHHHHHHHHHHhcCCc
Q 008934 206 FGVPAVIMLLSALSFFLASPF 226 (548)
Q Consensus 206 f~i~~~~~~i~~~~~~~~~~~ 226 (548)
+.+.+....+..++.....|+
T Consensus 474 ~~~~~~~~~l~~~~~~~~lpe 494 (521)
T KOG0255|consen 474 LILFGWLALLLGLLSLLLLPE 494 (521)
T ss_pred HHHHHHHHHHHHHHHHhcCcc
Confidence 333333333444333344443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.081 Score=56.45 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=87.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchh
Q 008934 375 LKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM 454 (548)
Q Consensus 375 ~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~ 454 (548)
-++.+..|.+++.++-++...++.. .+-.-+++.++.++.|+|.+.... .=.++.+..-.+.
T Consensus 101 ~k~Pli~s~ii~~~g~llY~~l~~~-----------------~~~~~y~mL~~R~l~Gvg~~n~a~-lR~Y~a~~s~~~d 162 (488)
T KOG2325|consen 101 VKKPLIVSFLIAIIGNLLYLALAYV-----------------PNGVKYLMLVARILTGVGVGNFAV-LRAYIADASTVED 162 (488)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHhc-----------------ccchHHHHHHHHHHcCcCcccHHH-HHHHHHhccCccc
Confidence 3666899999999999988555521 111678899999999999665443 3344445445556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008934 455 SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF 530 (548)
Q Consensus 455 rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 530 (548)
|-++++..+....+|..+||.+...+..+..++. .+.+. ..=..|...-|+.+++.++.+++..+..++..+.
T Consensus 163 R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~--~i~~~-~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 163 RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGF--MILPG-LIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCce--EEcCc-ceEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence 7788888888888888888888766654443221 12221 1112345556777777787777777666665443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.045 Score=57.03 Aligned_cols=124 Identities=7% Similarity=-0.026 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCch---h
Q 008934 378 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS---M 454 (548)
Q Consensus 378 ~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~---~ 454 (548)
.+.+|.++..+|.+++..... + +. .....+.+.+.+++.+.++|.+..-|....+..++.+++ +
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~---------~--~~--~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~ 69 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAI---------P--PS--LPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSR 69 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHT---------S--SS--C------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTH
T ss_pred hhhHHHHHHHHHHHHhHHHHh---------c--ch--hhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhh
Confidence 467788888888888665540 0 00 012234567888999999999999999999999998876 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008934 455 SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF 530 (548)
Q Consensus 455 rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 530 (548)
|..+...+....++|..++..+.+.+.+. -++...|.+.++.++++++.++...+++...
T Consensus 70 ~~~~F~~fY~~in~G~~~~~~~~~~i~~~----------------~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 70 RDSFFNWFYWGINIGSLFSPTLVPYIQQN----------------YGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHC----------------S-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhhHHHHHHHHhhhhHhhcccchhhccc----------------cchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 55566777888888888888887776532 1356778888888999988887766665444
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.0016 Score=71.08 Aligned_cols=151 Identities=12% Similarity=0.015 Sum_probs=3.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHH----HHhh--------hcCCC----------------CCcccccccchHHH
Q 008934 373 LSLKLRMGIGLLFSTASMTAWAIVEAARR----SIAI--------NEGIS----------------DDLRAVVQMSAMWQ 424 (548)
Q Consensus 373 ~~~~~~~~iG~~l~~i~~~~~~~~~~~~~----~~~~--------~~~~~----------------~~~~~~~~~s~~~~ 424 (548)
.++.+++.+|.++++++.++++.-+-... .... .+.+. +...+......+.+
T Consensus 65 ~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 144 (539)
T PF03137_consen 65 GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVF 144 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHH
Confidence 45568889999999999888755421100 0000 00111 01111122234668
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----cC--------CCCCCC
Q 008934 425 LPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDIT----KR--------GGNGGW 492 (548)
Q Consensus 425 i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~----~~--------~~~~~~ 492 (548)
+++.++.|+|..-..+-..+++.+.++++..+.+.|+...+..+|-++|-.+.+.+.++. .. +..+.|
T Consensus 145 ~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~W 224 (539)
T PF03137_consen 145 ILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRW 224 (539)
T ss_dssp -------SSS----------------------------------------------------------------------
T ss_pred HHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccH
Confidence 889999999999999999999999999999999999999999999999988887755432 11 112334
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008934 493 IPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGP 529 (548)
Q Consensus 493 ~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~ 529 (548)
+ |..+.-|.+.+++.++..+.+..+.|+..+
T Consensus 225 v------GAWWLGfli~g~~~~l~aipl~~FPk~lp~ 255 (539)
T PF03137_consen 225 V------GAWWLGFLICGILLFLSAIPLFFFPKKLPG 255 (539)
T ss_dssp -------------------------------------
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence 3 123333555666666665555555554443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.08 Score=58.98 Aligned_cols=152 Identities=11% Similarity=0.041 Sum_probs=102.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH----HHHHhh------hc---------C---C-----CCCcc-cc-ccc-chH
Q 008934 373 LSLKLRMGIGLLFSTASMTAWAIVEAA----RRSIAI------NE---------G---I-----SDDLR-AV-VQM-SAM 422 (548)
Q Consensus 373 ~~~~~~~~iG~~l~~i~~~~~~~~~~~----~~~~~~------~~---------~---~-----~~~~~-~~-~~~-s~~ 422 (548)
..+.+.+.+|.++++++.++.+.-+-. ..+... .. + . ..+.. .. .+. .+.
T Consensus 159 ~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 238 (735)
T KOG3626|consen 159 GHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFL 238 (735)
T ss_pred cCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHH
Confidence 455678999999999999888765321 111110 00 0 0 01111 11 122 233
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC---------CCCCCC
Q 008934 423 WQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRG---------GNGGWI 493 (548)
Q Consensus 423 ~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~---------~~~~~~ 493 (548)
.++++.++.|+|+.-.++.+.+++.+.+.++.-..+.|+...++.+|-++|-++.++..++--.. ..+.|+
T Consensus 239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWI 318 (735)
T KOG3626|consen 239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWI 318 (735)
T ss_pred HHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchh
Confidence 57889999999999999999999999999999999999999999999999999988765432111 012233
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008934 494 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF 530 (548)
Q Consensus 494 ~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 530 (548)
|..+.-|.+.++++++..+.++++.++..+.
T Consensus 319 ------GAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 319 ------GAWWLGFLICGALLLFSAVPLFFFPKELPKS 349 (735)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHhCcccCccc
Confidence 2234446677788888877777777666543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.3 Score=44.15 Aligned_cols=85 Identities=14% Similarity=0.095 Sum_probs=69.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCc
Q 008934 373 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 452 (548)
Q Consensus 373 ~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~ 452 (548)
.++++.+.+|.++..+-....... +.+.+.++.++.|+|.++.++..-.+..+...+
T Consensus 64 lg~K~sm~lg~~~y~~y~~~~~~~-----------------------~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~ 120 (156)
T PF05978_consen 64 LGPKWSMILGSLGYAIYIASFFYP-----------------------NSYTLYPASALLGFGAALLWTAQGTYLTSYSTE 120 (156)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhh-----------------------hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence 556678888888877444333221 467789999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008934 453 SMSSIASTLSGAGLSAANLVASLIMNAV 480 (548)
Q Consensus 453 ~~rg~~~g~~~~~~~~g~~lg~~~~~~i 480 (548)
+.+++.+|+++...+.+..+|..+.-.+
T Consensus 121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 121 ETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888875553
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.2 Score=48.78 Aligned_cols=159 Identities=9% Similarity=-0.063 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHH--HHHHHHHH-HHH
Q 008934 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFG--CFTCLLGM-VLL 101 (548)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~--~~~~~~~~-~l~ 101 (548)
..++..++--+.=....-.+..-+|-+..+.+.+++++..+..++..++|+++++- - ++...+- ..+....+ .++
T Consensus 22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~-~~~~~~e~~i~l~~~~~~~ll 99 (521)
T PRK03612 22 AVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-A-AGFVAVELLLALLGGLSALIL 99 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-H-HHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555566667899999999999999999999999999887542 2 2222221 11111111 111
Q ss_pred HHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHH
Q 008934 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181 (548)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 181 (548)
.... +. ............++.++..|+..|....+..+...++ -++..+-.|..
T Consensus 100 ~~~~--~~----------------~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~--------~g~~~g~ly~~ 153 (521)
T PRK03612 100 YAAF--AF----------------QGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQH--------LGHNVATVLAA 153 (521)
T ss_pred HHHH--HH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------hhhhhhhhHhH
Confidence 1111 00 0001111223334456666777676666655432211 24456666777
Q ss_pred HHHHHHHHHHHHHHhhh-ccCchhhhHHHHH
Q 008934 182 VSASSIVAVTCIVYIQD-NLGWKVGFGVPAV 211 (548)
Q Consensus 182 ~~ig~~~gp~i~~~l~~-~~g~~~~f~i~~~ 211 (548)
..+|+++|.++.+++.- ..|-....++.+.
T Consensus 154 ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~ 184 (521)
T PRK03612 154 DYLGALVGGLAFPFLLLPRLGLIRTAALTGS 184 (521)
T ss_pred HhHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 88888888888776543 5664434433333
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.29 Score=47.89 Aligned_cols=91 Identities=10% Similarity=0.101 Sum_probs=67.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCc
Q 008934 373 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 452 (548)
Q Consensus 373 ~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~ 452 (548)
.+++..+.+|.++..++..++...- ++ ...+.+.|.+.....+.+.+.+..+........+..|.
T Consensus 63 ~gp~~~l~iG~~~~~~GY~~~~l~~---------~~------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~ 127 (250)
T PF06813_consen 63 FGPWVVLLIGAVLGFVGYGLLWLAV---------SG------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR 127 (250)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH---------hC------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc
Confidence 6777788899999998887775443 00 01234678887777788888888777766666677886
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008934 453 SMSSIASTLSGAGLSAANLVASLIMNA 479 (548)
Q Consensus 453 ~~rg~~~g~~~~~~~~g~~lg~~~~~~ 479 (548)
.||++.|+.-...++++++=+.+...
T Consensus 128 -~RG~vvgilk~~~GLSaai~t~i~~~ 153 (250)
T PF06813_consen 128 -SRGTVVGILKGFFGLSAAIFTQIYSA 153 (250)
T ss_pred -ccCceehhhhHHHHhHHHHHHHHHHH
Confidence 59999999999999998876665443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=94.83 E-value=1.5 Score=46.64 Aligned_cols=138 Identities=12% Similarity=0.009 Sum_probs=100.6
Q ss_pred HhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 008934 34 VGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPP 113 (548)
Q Consensus 34 ~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 113 (548)
-++-..+..|+..+ |+++...|..-+...+....+.....++.+|+ |.-|.=.+++.+......++..+-+.|.-
T Consensus 275 Lsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~--- 349 (432)
T PF06963_consen 275 LSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGS--- 349 (432)
T ss_pred hcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCC---
Confidence 34456788898877 99999999999999999999999999999996 99999999998877766666555433330
Q ss_pred CcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008934 114 ACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI 193 (548)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~ 193 (548)
++ +..+...++.+.++-=+|-=+.--+..-++.|.+|+ ++|+...+.-....++.-.+...++
T Consensus 350 ---~~-------~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~-------~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 350 ---PF-------SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPE-------SERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred ---Cc-------hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH-------HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00 011233333333333355445556778888888888 4499999999888888888776554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.37 Score=51.40 Aligned_cols=118 Identities=21% Similarity=0.176 Sum_probs=76.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccc---c
Q 008934 374 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTE---L 450 (548)
Q Consensus 374 ~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~---~ 450 (548)
+++.-+.+|.++.+++...++.... ...+.........+..+|..+........+.+. -
T Consensus 57 rr~~Y~~i~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~ 118 (433)
T PF03092_consen 57 RRKPYMIIGWLLGAVSALVLALLPA------------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARRE 118 (433)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccc------------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Confidence 3445567777777666666555430 112444555666777888888887776666555 4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhc
Q 008934 451 PKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKA 526 (548)
Q Consensus 451 P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 526 (548)
|.+ +|..++..+..+.+|+.++..+.|.+.+.. ++...|.+.+.+..+..+....+.++
T Consensus 119 p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~----------------~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 119 PES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSF----------------GPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred Cch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcC----------------CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 555 889999999999999999999988865322 12334666666666665555555554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.93 Score=46.08 Aligned_cols=122 Identities=12% Similarity=0.060 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhH
Q 008934 377 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 456 (548)
Q Consensus 377 ~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg 456 (548)
..+.+|.+..+.+.+++...+ .+|+.-.+|+++..-..+..+.....+......+.-|
T Consensus 304 ~ll~~~s~~~agllf~m~~t~----------------------~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~g 361 (433)
T KOG3810|consen 304 LLLAVGSAVQAGLLFIMAQTQ----------------------HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFG 361 (433)
T ss_pred HHHHHHHHHhhhhhhhhhccc----------------------ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhhe
Confidence 445667777777777777654 6888999999999999998888877777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008934 457 IASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 528 (548)
Q Consensus 457 ~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 528 (548)
...|++.+..- .+=+.++-.+.+..+ --++-...---|...|.+++++.+++..+.+..+++.+
T Consensus 362 LvFGiNTFvAl---~lQsilT~iVvd~~g-----~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~~~~ 425 (433)
T KOG3810|consen 362 LVFGINTFVAL---ILQSILTLIVVDDRG-----LGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLMCRRNK 425 (433)
T ss_pred eeeehHHHHHH---HHHHhheEEEEcccc-----cCCCcceeEEEEeehHHHHHHHHHHHHHHHHHHhhcCC
Confidence 88888866433 333333333222111 00000000012556788999999998777665554443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.92 Score=48.32 Aligned_cols=152 Identities=14% Similarity=0.099 Sum_probs=93.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhccccch-------HHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCC
Q 008934 50 METTAATNIIFIWTAATNFLPIVGALLADSYVGRY-------RMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGC 122 (548)
Q Consensus 50 ~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 122 (548)
+++++.. +.-.+...+..|+-.++--+. +++ .-+-+++++...+.+++.... .-..
T Consensus 324 vp~~~fQ---slNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~-~~~~------------ 386 (498)
T COG3104 324 VPPAWFQ---SLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLAG-IWFG------------ 386 (498)
T ss_pred cCHHHHH---hhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHHH-Hhhc------------
Confidence 4455444 444445555556666665552 332 234445555555555554431 0000
Q ss_pred cCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH------h
Q 008934 123 ESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY------I 196 (548)
Q Consensus 123 ~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~------l 196 (548)
...+..+.++++.+.+++++|.=+..|...+++.+..|+ .-.+..++.+......|..++..+.+. .
T Consensus 387 ~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~-------~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~ 459 (498)
T COG3104 387 GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPP-------ALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPA 459 (498)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChH-------HHHHHHHHHHHHHHHHHHHhhceecccccccchh
Confidence 002234788899999999999999999999999999998 447888888888788887777666552 2
Q ss_pred hhccCchhhhHHHHHHHHHHHHHHHhcCC
Q 008934 197 QDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (548)
Q Consensus 197 ~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 225 (548)
.+.......|+..+...++...++....|
T Consensus 460 ~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 460 YTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 22334556677776665555544444333
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.4 Score=49.57 Aligned_cols=132 Identities=12% Similarity=0.057 Sum_probs=87.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCc
Q 008934 373 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 452 (548)
Q Consensus 373 ~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~ 452 (548)
.+..+.+.++.++..++..++++... + .. ...........+..+.++|.+.+-|...++..++.++
T Consensus 51 lG~~~tIl~~~ii~~lG~~llai~a~---------~--~~---~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~ 116 (654)
T TIGR00926 51 LGKFKTILYLSIVYVVGHALLSFGAI---------P--SS---GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE 116 (654)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhccC---------c--cc---ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc
Confidence 45557778888888888877765320 0 00 0001123355678888999999999999999988765
Q ss_pred h---hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008934 453 S---MSSIASTLSGAGLSAANLVASLIMNAVDDIT-KRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 528 (548)
Q Consensus 453 ~---~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 528 (548)
+ .+-....++..+.++|+.+++.+.+.+.... ..+.+ ..+...|.+.+++++++++++....++++
T Consensus 117 ~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~----------~~~~~aF~i~~i~m~ia~lvf~~g~k~y~ 186 (654)
T TIGR00926 117 RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQ----------DCYPLAFGVPAILMILALIVFMAGSKMYK 186 (654)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC----------cchHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 4 3556777777778888888888877764211 00000 13567788888888888888876665553
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=92.20 E-value=7.4 Score=40.92 Aligned_cols=113 Identities=14% Similarity=0.046 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhh
Q 008934 376 KLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMS 455 (548)
Q Consensus 376 ~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r 455 (548)
+..+..+.+...++..++.+.. +.+++-+.-++.|++.+. -...+++++..+|++.-
T Consensus 71 kpviil~~~~~i~t~~lll~~~----------------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~y 127 (412)
T PF01770_consen 71 KPVIILQALSYIITWLLLLFGT----------------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHY 127 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHC----------------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHH
Confidence 3456667766666676666655 788888888889888776 66678999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 008934 456 SIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK 525 (548)
Q Consensus 456 g~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~ 525 (548)
-.+++-.....-+|..++..+...+.... +.+|.....+..+...+++++..++.+
T Consensus 128 q~vts~~raa~l~g~~~s~~lgQllvs~~--------------~~sy~~L~~isl~~~~~a~~~~~fLP~ 183 (412)
T PF01770_consen 128 QKVTSYTRAATLVGRFISSLLGQLLVSFG--------------GVSYFQLNYISLASVSLALLIALFLPM 183 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 89998888888888888888877655322 123555545544555555565555543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.60 E-value=6.1 Score=38.90 Aligned_cols=139 Identities=10% Similarity=0.081 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccch--HHHHHHHHHHHHHHHHHHHhcc-cCCCCCCCcccccCCCcCCCccchH
Q 008934 55 ATNIIFIWTAATNFLPIVGALLADSYVGRY--RMIGFGCFTCLLGMVLLWSTTI-LPGAKPPACDQLRNGCESATWSQLM 131 (548)
Q Consensus 55 ag~i~~~~~~~~~~~~~~~G~laDr~~Grk--~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (548)
-|.+.+.+.++.++++-+..++..|. ..| ..+.+..++......+..++.+ .|. ..++.
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~-----------------kes~~ 345 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTSSVSPS-----------------KESPS 345 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHhccCCC-----------------cCCch
Confidence 47888888888888888888887773 433 3444444444444433333332 122 22445
Q ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHH
Q 008934 132 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAV 211 (548)
Q Consensus 132 ~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~ 211 (548)
.-+++..+.-.+.|..+|+.+-+=++..|++ +|+..++++..-.|+-.-++....-.-..-.+-|..|-++..
T Consensus 346 ~s~i~F~~~E~cvGlfwPSimkmRsqyIPEe-------arstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~ 418 (454)
T KOG4332|consen 346 ESLIGFCLFEACVGLFWPSIMKMRSQYIPEE-------ARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSA 418 (454)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHhhCCHH-------HHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHH
Confidence 5678888888999999999999999999984 489999998887777654332110000001245677888777
Q ss_pred HHHHHHH
Q 008934 212 IMLLSAL 218 (548)
Q Consensus 212 ~~~i~~~ 218 (548)
...++.+
T Consensus 419 ~~~~a~i 425 (454)
T KOG4332|consen 419 FLFVASI 425 (454)
T ss_pred HHHHHHH
Confidence 6655543
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=87.30 E-value=25 Score=37.94 Aligned_cols=59 Identities=12% Similarity=-0.006 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhh-hhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008934 424 QLPYLVLSGLAMAFNMI-GQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD 482 (548)
Q Consensus 424 ~i~~~~l~g~g~~~~~~-~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~ 482 (548)
....|+...+=..++.+ -.+.++.+....++..+..++.....++|..+|+.++..+.+
T Consensus 131 ~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 131 FALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333 567888899999999999999999999999999999887664
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.96 E-value=24 Score=37.72 Aligned_cols=132 Identities=17% Similarity=0.128 Sum_probs=76.7
Q ss_pred hHhhcCChhHHHHHH-HHHHHHHHHHHHHHHHHh---hccccchHHHHHHHHHHHHHHHHHHHhcccCCC--CCCCcccc
Q 008934 45 CREYNMETTAATNII-FIWTAATNFLPIVGALLA---DSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGA--KPPACDQL 118 (548)
Q Consensus 45 ~~~lg~s~~~ag~i~-~~~~~~~~~~~~~~G~la---Dr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~ 118 (548)
+++++.+....-.+. ....++..++..+.+.+. ++ +||++++.++..+..++.++..++. |.- +.+.-
T Consensus 270 t~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~-fg~~~~~~~~~~~~~~~~~li~l~~--p~dap~~~t~--- 343 (461)
T KOG3098|consen 270 TRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRG-FGRKPTVLIGIIIHLIGFLLIHLSF--PNDAPLRPTD--- 343 (461)
T ss_pred hhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhh-cccCcchhHHHHHHHHHHHHHhccc--cccCCCCCCc---
Confidence 434554444333222 223333444445555554 55 4889999999998888877776643 210 00000
Q ss_pred cCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008934 119 RNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 192 (548)
Q Consensus 119 ~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i 192 (548)
........+....++.-++.|++-+......+.++++.+|+ + |..+++++-.-..+++.++...
T Consensus 344 --~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~-~-------~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 344 --SPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPD-D-------RAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred --ccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC-c-------hHHHHHHHHHHHHHHHHHHhhh
Confidence 00011111344555666789999999999999999999954 3 5677777666666665554433
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=85.41 E-value=8.6 Score=40.35 Aligned_cols=62 Identities=10% Similarity=-0.053 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008934 129 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ 197 (548)
Q Consensus 129 ~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~ 197 (548)
+.|.+++..+..|+..|+.+.+....+.+..|++ +|..+++....+-++|..++..++-++.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~-------~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPE-------DREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4667777788899999999999999999988774 4899999988888899888877665543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=84.05 E-value=68 Score=34.79 Aligned_cols=135 Identities=11% Similarity=0.070 Sum_probs=77.8
Q ss_pred ChhHHHHHHHHHHH-HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCC--CCCCC--cccccCCCcCC
Q 008934 51 ETTAATNIIFIWTA-ATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPG--AKPPA--CDQLRNGCESA 125 (548)
Q Consensus 51 s~~~ag~i~~~~~~-~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~--~~~~~~~~~~~ 125 (548)
++.....+-....+ ...+...+-.+++|++ +|.+++.+....+.....+.++.- .|. .+.|. ++.. +..
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~~~~F~~fF~~f~~vl-yP~~~~lhp~~~~~~~----~~~ 129 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYIIIIPFLGFFALFAFVL-YPNRDILHPDAFADKL----LAI 129 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHH-hhchhhcCCCHHHHHh----hhh
Confidence 45555555554434 4455577789999996 999999987776666555555432 121 01010 1100 000
Q ss_pred Ccc---------chHHHHHHHHHHHHhcccccc-chhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008934 126 TWS---------QLMPLYFAFGLMSLGSGGIRS-SSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY 195 (548)
Q Consensus 126 ~~~---------~~~~~~i~~~l~g~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~ 195 (548)
... +.|...+...+..+=.....+ .-+.+..|.++.++ -.+.+++++.+.|+|.+++..+..+
T Consensus 130 ~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~e-------AKRfYpl~g~ganigli~sG~~~~~ 202 (491)
T PF03219_consen 130 LPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEE-------AKRFYPLFGLGANIGLIFSGQLTSY 202 (491)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 112222222222222222222 34788888888744 6889999999999999999998888
Q ss_pred hhh
Q 008934 196 IQD 198 (548)
Q Consensus 196 l~~ 198 (548)
+.+
T Consensus 203 ~~~ 205 (491)
T PF03219_consen 203 FSS 205 (491)
T ss_pred HHH
Confidence 877
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=82.89 E-value=21 Score=34.21 Aligned_cols=62 Identities=13% Similarity=0.043 Sum_probs=50.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhhcccccCc-hhhHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 008934 420 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK-SMSSIASTLSGA-GLSAANLVASLIMNAVD 481 (548)
Q Consensus 420 s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~g~~~~-~~~~g~~lg~~~~~~i~ 481 (548)
+.+.++......|++.+...+.......+..|+ +.|+...+.... ...+|..+++.+.+.+.
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777778999999999999999999998 678998888888 57788888886666654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 548 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 4e-04 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 263 bits (675), Expect = 1e-81
Identities = 81/542 (14%), Positives = 175/542 (32%), Gaps = 78/542 (14%)
Query: 17 RTLPFIIANEAFERMATVGFTPNMILYLCREY------NMETTAATNIIFIWTAATNFLP 70
R +P+IIA+EA ER + G + +L + A ++ + F P
Sbjct: 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP 71
Query: 71 IVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQL 130
++G +AD + G+Y I + +G L + +
Sbjct: 72 LLGGWIADRFFGKYNTILWLSLIYCVGHAFL----------------------AIFEHSV 109
Query: 131 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV 190
Y L++LGSGGI+ +F +Q D+ + + ++ A F +Y ++ S A
Sbjct: 110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA----FDMFYFTINFGSFFAS 165
Query: 191 TCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKN 250
+ + N G V FG+P V+M ++ + F+L Y+ G V+ ++
Sbjct: 166 LSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLT 225
Query: 251 RRTKLPTQ----ATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNS 306
+ A + + + L A + +
Sbjct: 226 KVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARK 285
Query: 307 LCTVEQVEELKALIK------------------ASSMD---RHVTPNFEIPSGSFNIFAI 345
V+ ++++++ AS+ +
Sbjct: 286 SHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNP 345
Query: 346 LTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAI 405
L + + I + + P ++ K + +MG G+ + S ++
Sbjct: 346 LLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSWIVVGTIQLMM----- 397
Query: 406 NEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAG 465
+S WQ+ L EF Y++ PK+M +
Sbjct: 398 --------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLS 449
Query: 466 LSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK 525
++ NL L +V T + + ++ + +++ ++ + + +
Sbjct: 450 VTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVTAFQMFFF--AGFAILAAIVFALYAR 504
Query: 526 AY 527
+Y
Sbjct: 505 SY 506
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 7e-15
Identities = 35/218 (16%), Positives = 79/218 (36%), Gaps = 33/218 (15%)
Query: 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYN-----METTAATNIIFIWTAATNFLPI 71
L + E +ER + G ++ Y+ + + A +I+ I+ +
Sbjct: 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72
Query: 72 VGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLM 131
+G +AD +G + +G +LG ++L A
Sbjct: 73 IGGFVADRIIGARPAVFWGGVLIMLGHIVL-----------------------ALPFGAS 109
Query: 132 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT 191
L+ + L+ +G+G ++ + D+ D + G FS + ++ + +A
Sbjct: 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAG-----FSIFVFGINLGAFIAPL 164
Query: 192 CIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVK 229
+ Q+ G+ V F + A+ M + L ++ +
Sbjct: 165 IVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 3e-04
Identities = 48/336 (14%), Positives = 99/336 (29%), Gaps = 96/336 (28%)
Query: 221 FLASPFYVKSKANTSLLPGLTQVLVASFKNRR-------TKLPTQATEEMYHHGKGSMRL 273
FL SP + + P + + ++R K + + + L
Sbjct: 93 FLMSPIKTEQRQ-----PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 274 MPSENLRFLN------KACMA-----KHPEQDLTPD-------GRASNPNSLCTVEQVEE 315
P++N+ ++ K +A + Q ++P ++ +E +++
Sbjct: 148 RPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV--LEMLQK 204
Query: 316 LKALIK---ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPL---------- 362
L I S D I S + +L Y+ +L L
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK----PYENCLLVLLNVQNAKAWN 260
Query: 363 ASKIKGKPCQLSLKLRMGIGLLFST--ASMTAWAIVEAARRSIAINE---GISDD----- 412
A + C++ L +T +T + A I+++ ++ D
Sbjct: 261 AFNLS---CKI----------LLTTRFKQVTD-FLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 413 LRAVVQMSAMWQLPYLVLSGLAMAFNMIG--------QTEFY-YTELPKSMSSIASTLSG 463
L + LP VL+ ++I + + + K + I S+L
Sbjct: 307 LLKYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-- 363
Query: 464 AGLSAANLVASLIMNAV--DDITKRGGNGGWIPSNI 497
L A +V IP+ +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSA--------HIPTIL 391
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 548 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.94 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.93 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.88 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.87 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.85 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.46 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.39 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.33 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.13 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.93 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.79 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.2 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=263.67 Aligned_cols=437 Identities=16% Similarity=0.165 Sum_probs=286.6
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHh-----hcCChhHHHHHHHHHHHHHHHHHHHHHHHhhc-cccchH
Q 008934 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCRE-----YNMETTAATNIIFIWTAATNFLPIVGALLADS-YVGRYR 85 (548)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr-~~Grk~ 85 (548)
.++++|.++.+....+++++++|++..+++.|++++ +|+++.+++++.+.+.++..++++++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~ 86 (491)
T 4aps_A 8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARP 86 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchH
Confidence 355678899999999999999999999999999998 99999999999999999999999999999999 7 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCC
Q 008934 86 MIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGT 165 (548)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 165 (548)
++.++.++..++.+++.+++ +.+.++++|+++|+|.+...++..++++|.+|+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-- 141 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPF-----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD-- 141 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCC-----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT--
T ss_pred HHHHHHHHHHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc--
Confidence 99999999999998888655 67789999999999999999999999999999866
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceecc---CCCC-CCchhHH
Q 008934 166 KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKS---KANT-SLLPGLT 241 (548)
Q Consensus 166 ~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~---~~~~-~~~~~~~ 241 (548)
+.|+.++++++...++|..++|.+++++.++.||+++|++.++..+++.+......++..++ ++++ .+..+..
T Consensus 142 ---~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
T 4aps_A 142 ---RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVK 218 (491)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHH
T ss_pred ---ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhH
Confidence 34788999999999999999999999999999999999998877766666554433322211 1111 1111111
Q ss_pred HHH--------------HHHHhhccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCC--C
Q 008934 242 QVL--------------VASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNP--N 305 (548)
Q Consensus 242 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~ 305 (548)
+.. ........... +........ ........+... ...... ..+....... +
T Consensus 219 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~ 286 (491)
T 4aps_A 219 PLLVKVSLAVAGFIAIIVVMNLVGWNSL---PAYINLLTI-----VAIAIPVFYFAW---MISSVK-VTSTEHLRVVSYI 286 (491)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHHSSCCT---THHHHHHHH-----HHHHHHHHHHHH---HC-------------CTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccc---ccchhhhhH-----HHHHHHHHHHHH---Hhhccc-ccHHHHHHHHHHH
Confidence 100 00000100000 000000000 000000000000 000000 0000000000 0
Q ss_pred ccch--------HHHHHHHHHHHHHhhccCCCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchH
Q 008934 306 SLCT--------VEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKL 377 (548)
Q Consensus 306 ~~~~--------~~~~~~~~~~~~~~~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 377 (548)
..+. ..+.......+..+..+.. ..+.+.+...+.+..++..++.++ +.+|+++|+ .....
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----l~~r~~~r~--~~~~~ 355 (491)
T 4aps_A 287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIMLYTPFFAW----LWTAWKKNQ--PSSPT 355 (491)
T ss_dssp HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHHHHHHHHH----HHHHTTTC-----CHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHHHHHHHHH----HHHHHhccC--CCchH
Confidence 0000 0000000000001111111 144567777888888877776444 456665553 45667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHH
Q 008934 378 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSI 457 (548)
Q Consensus 378 ~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~ 457 (548)
.+.+|.++.+++++.+...... .+ ...+.+.+++++.+++.+++++...+..++++.+..|++.||+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~ 422 (491)
T 4aps_A 356 KFAVGLMFAGLSFLLMAIPGAL-------YG------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQ 422 (491)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHH-------CC------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------cC------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHH
Confidence 7788999999998887665411 00 0123467788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008934 458 ASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF 530 (548)
Q Consensus 458 ~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 530 (548)
++|+.+...++|+.+++.+.+.+.+. ++...|+..+++.++..++.+...++.+++
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998776531 245667787888877777766665554433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-28 Score=260.03 Aligned_cols=450 Identities=20% Similarity=0.308 Sum_probs=273.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhc------CChhHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchH
Q 008934 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYN------METTAATNIIFIWTAATNFLPIVGALLADSYV-GRYR 85 (548)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg------~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~-Grk~ 85 (548)
++++|.++.+.+..++.++++|++.++++.|+++++| +++.+++++.+.+.++..++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~ 86 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYN 86 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchH
Confidence 3446778888899999999999999999999999999 999999999999999999999999999999 6 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCC
Q 008934 86 MIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGT 165 (548)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 165 (548)
++.++.++..++.+++.++. .+.+.++++|++.|++.+...++..++++|.+|++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r- 143 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIFE----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK- 143 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTS----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT-
T ss_pred HHHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch-
Confidence 99999999999888887643 1567788999999999999999999999999998663
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHH
Q 008934 166 KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLV 245 (548)
Q Consensus 166 ~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (548)
+++...+++.+...++|.+++|.+++++.+..||+++|++.++..+++.+..+...++.+++++++++..+..+.+.
T Consensus 144 ---~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (524)
T 2xut_A 144 ---SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIR 220 (524)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHH
Confidence 22355666789999999999999999999989999999998887776666555444433322222221111111111
Q ss_pred HHHhhccCCCCC---------------------------------------cchhhh--hhcC-C-CC-cccCCcch-hh
Q 008934 246 ASFKNRRTKLPT---------------------------------------QATEEM--YHHG-K-GS-MRLMPSEN-LR 280 (548)
Q Consensus 246 ~~~~~~~~~~~~---------------------------------------~~~~~~--~~~~-~-~~-~~~~~~~~-~~ 280 (548)
...++++...++ +..+.+ .+.. . .. ........ ..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (524)
T 2xut_A 221 SALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLR 300 (524)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHH
T ss_pred HHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHH
Confidence 111111100000 000000 0000 0 00 00000000 00
Q ss_pred hHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCceecCcccchhhHHHHHHHHHHHHHHHH
Q 008934 281 FLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVL 360 (548)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~ 360 (548)
........ ...|..+ .+....... ....++... + .+.+.+...+.+..++..++.+++..
T Consensus 301 ~~~~~~~~-------------~~~~~~~--~~~~~~~~~-~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (524)
T 2xut_A 301 ILVLFALV-------------TPFWSLF--DQKASTWIL-QANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLY 360 (524)
T ss_dssp HHHHHTTS-------------HHHHTTT--SSTTTHHHH-HHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC--
T ss_pred HHHHHHHH-------------HHHHHHH--hccchhhHH-hHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhH
Confidence 00000000 0000000 000000000 011112110 0 23445556666666777776666555
Q ss_pred hhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhh
Q 008934 361 PLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMI 440 (548)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~ 440 (548)
|..+|..++ .+..+++.+|.++.+++++.+...... .+ .....+.+++++.+++.+++++...+
T Consensus 361 ~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~~~~~~~l~g~~~~~~~~ 424 (524)
T 2xut_A 361 PAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLM----------MD---GGSALSIFWQILPYALLTFGEVLVSA 424 (524)
T ss_dssp -------------CCHHHHHTHHHHHHHHHHTTTTTTTT----------TT---TTCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHH----------hc---CCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 555554333 566677888999888888776553200 00 00124677888899999999999999
Q ss_pred hhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHHH
Q 008934 441 GQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPS-NINKGHYDYYYWLLTALSMANFLY 519 (548)
Q Consensus 441 ~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~v~~~~ 519 (548)
..++++.+.+|++.||+++|+.++..++|+.+|+.+.+.+.+..+ .+|..+ +.+ .....|++.+++.+++.++
T Consensus 425 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 498 (524)
T 2xut_A 425 TGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMS--VTAFQMFFFAGFAILAAIV 498 (524)
T ss_dssp HHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSC--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cccccccccc--ccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764221 123210 000 1123377778888888777
Q ss_pred HHHhhhcccccC
Q 008934 520 YLACCKAYGPFK 531 (548)
Q Consensus 520 ~~~~~~~~~~~~ 531 (548)
++...+++++++
T Consensus 499 ~~~~~~~~~~~~ 510 (524)
T 2xut_A 499 FALYARSYQMQD 510 (524)
T ss_dssp HC----------
T ss_pred HHHHHHHhccch
Confidence 776666555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-24 Score=226.64 Aligned_cols=397 Identities=10% Similarity=0.011 Sum_probs=252.5
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
++.++......++..+..+.+.+.++.+ .+++ .++.+.+++.+++.++..++.+++|+++||+ |||+++.++.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 3445555666677777777677777765 5567 9999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHH----hcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhh
Q 008934 96 LGMVLLWS----TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (548)
Q Consensus 96 ~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 171 (548)
++.+++++ +. +.+.++++|+++|++.+...++..+++.|.+|+ ++|
T Consensus 104 ~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~r 153 (451)
T 1pw4_A 104 AVMLFMGFVPWATS-----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KER 153 (451)
T ss_dssp HHHHHHHHCHHHHS-----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THH
T ss_pred HHHHHHHhhhhccc-----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-------hhh
Confidence 99999988 55 667899999999999999999999999999998 449
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccC-chhhhHHHHHHHHHHHHHHHhcCCceeccCCC--CCCchhHHHHHHHHH
Q 008934 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFLASPFYVKSKAN--TSLLPGLTQVLVASF 248 (548)
Q Consensus 172 ~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 248 (548)
++++++.+...++|.+++|.+++++.+..| |+++|++.++..++..++.....++.+++... .++..+.... ..
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 230 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD---DY 230 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccc---cc
Confidence 999999999999999999999999888888 99999998887766555444433332221110 0000000000 00
Q ss_pred hhccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCC
Q 008934 249 KNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRH 328 (548)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (548)
.+.. .++....+... +.......+..+.... .+........... ....+...
T Consensus 231 ~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~-~~~~~~~~ 282 (451)
T 1pw4_A 231 NEKA--EQELTAKQIFM-----QYVLPNKLLWYIAIAN--------------------VFVYLLRYGILDW-SPTYLKEV 282 (451)
T ss_dssp ----------CCTHHHH-----HHTSSCHHHHHHHHHH--------------------HHHHHHHHHHHHH-HHHHBTTB
T ss_pred hhhh--hcccccccchH-----HHHHcCHHHHHHHHHH--------------------HHHHHHHHHHHHH-HHHHHHHh
Confidence 0000 00000000000 0000000000000000 0000000001111 12222222
Q ss_pred CCCCceecCcc---cchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCC--CchHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 008934 329 VTPNFEIPSGS---FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL--SLKLRMGIGLLFST-ASMTAWAIVEAARRS 402 (548)
Q Consensus 329 lg~~~~i~~~~---~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~iG~~l~~-i~~~~~~~~~~~~~~ 402 (548)
.+ .++.. +.....+..++.. ++..++.+| . ++++.+.++.++.. ++++.+...
T Consensus 283 ~g----~~~~~~~~~~~~~~~~~~~~~--------~~~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 341 (451)
T 1pw4_A 283 KH----FALDKSSWAYFLYEYAGIPGT--------LLCGWMSDK---VFRGNRGATGVFFMTLVTIATIVYWMN------ 341 (451)
T ss_dssp SC----CCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH---TSTTCHHHHHHHHHHHHHHHHHHTTSC------
T ss_pred cC----CCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHh------
Confidence 22 33222 2222222222222 223333333 3 44455555655554 555544322
Q ss_pred HhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 008934 403 IAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSA-ANLVASLIMNAVD 481 (548)
Q Consensus 403 ~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~-g~~lg~~~~~~i~ 481 (548)
.+.+.+.+....++.|++.+...+..+.+..+..|++.||+++|+.+...++ |..+++.+.+.+.
T Consensus 342 --------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~ 407 (451)
T 1pw4_A 342 --------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 407 (451)
T ss_dssp --------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1125666777788888888888888889999999999999999999999999 9999999999876
Q ss_pred hhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008934 482 DITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 527 (548)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 527 (548)
+.. ++...|+..+++.+++.++.+...++.
T Consensus 408 ~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (451)
T 1pw4_A 408 DFF----------------GWDGGFMVMIGGSILAVILLIVVMIGE 437 (451)
T ss_dssp HSS----------------CSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhc----------------CcHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 422 256778888888888877766654433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-23 Score=218.44 Aligned_cols=353 Identities=13% Similarity=0.061 Sum_probs=232.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Q 008934 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (548)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~ 92 (548)
+++++.+..+....++..+..+...+.+|. +++++|+|+.+.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 344555566666677777777666666665 6889999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHH---HHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccch
Q 008934 93 TCLLGMVLL---WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKG 169 (548)
Q Consensus 93 ~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 169 (548)
+..++.+++ ..+. +.+.++++|++.|+|.+...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------ 150 (438)
T 3o7q_A 100 LYALGAALFWPAAEIM-----------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------ 150 (438)
T ss_dssp HHHHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------
T ss_pred HHHHHHHHHHhccccc-----------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------
Confidence 999999888 5444 78899999999999999999999999999999854
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccC-------------------------chhhhHHHHHHHHHHHHHHHhc
Q 008934 170 ALQSYFSWYYVFVSASSIVAVTCIVYIQ-DNLG-------------------------WKVGFGVPAVIMLLSALSFFLA 223 (548)
Q Consensus 170 ~r~~~~~~~~~~~~ig~~~gp~i~~~l~-~~~g-------------------------~~~~f~i~~~~~~i~~~~~~~~ 223 (548)
|++++++.+...++|..++|.+++++. +..+ |++.|++.++..++..+..+..
T Consensus 151 -r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 151 -GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999988 5544 8999987776555544444332
Q ss_pred -CCceeccCCCCCCchhHHHHHHHHHhhccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCC
Q 008934 224 -SPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRAS 302 (548)
Q Consensus 224 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 302 (548)
.|+.+++++++++..+..+.....++++. +...-....
T Consensus 230 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~--------------- 268 (438)
T 3o7q_A 230 KFPALQSDNHSDAKQGSFSASLSRLARIRH--------------------------WRWAVLAQF--------------- 268 (438)
T ss_dssp CCCCCTTTCCCCSSTTSHHHHHHHHTTCSH--------------------------HHHHHHHHH---------------
T ss_pred cCCcccccccccccccchhhhHHHHHhChH--------------------------HHHHHHHHH---------------
Confidence 22222111111111111111111111100 000000000
Q ss_pred CCCccchHHHHHHHHHHHHHhh-ccCCCCCCceecCcc---cchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHH
Q 008934 303 NPNSLCTVEQVEELKALIKASS-MDRHVTPNFEIPSGS---FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLR 378 (548)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~-~~~~lg~~~~i~~~~---~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 378 (548)
.+...+ ...... .... ....++ .+... +.....+..++ ..++..++.+| .++++.
T Consensus 269 ----~~~~~~-~~~~~~-~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~--------~~~~~g~l~~r---~~~~~~ 327 (438)
T 3o7q_A 269 ----CYVGAQ-TACWSY-LIRYAVEEIPG----MTAGFAANYLTGTMVCFFI--------GRFTGTWLISR---FAPHKV 327 (438)
T ss_dssp ----HHHHHH-HHHHHH-HHHHHHHHSTT----CCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH---SCHHHH
T ss_pred ----HHHHHH-HHHHHH-HHHHhhhccCC----cchhHHHHHHHHHHHHHHH--------HHHHHHHHHHH---hcchHH
Confidence 000000 000000 0111 112222 22221 12222222222 22233334444 566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHH
Q 008934 379 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 458 (548)
Q Consensus 379 ~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~ 458 (548)
+.++.++.+++++.+.+.. +. +.....++.+++.+...|..+.+..+..|++ ++.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~----------------------~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 383 (438)
T 3o7q_A 328 LAAYALIAMALCLISAFAG----------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYG 383 (438)
T ss_dssp HHHHHHHHHHHHHHHHHCC----------------------HH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHH
T ss_pred HHHHHHHHHHHHHHHHHcC----------------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccch
Confidence 7788888877776665432 22 3344557888899999999999988999977 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008934 459 STLSGAGLSAANLVASLIMNAVDDIT 484 (548)
Q Consensus 459 ~g~~~~~~~~g~~lg~~~~~~i~~~~ 484 (548)
+++.. ...+|+.++|.+.+.+.+..
T Consensus 384 ~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 384 SSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 99887 67799999999999877543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-20 Score=201.25 Aligned_cols=419 Identities=12% Similarity=0.059 Sum_probs=222.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccch
Q 008934 51 ETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQL 130 (548)
Q Consensus 51 s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (548)
+..+.+++.+++.++..++++++|+++||+ |||+++.++.+++.++.++++++.......... ......-..+.
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~-----~~~~~~~a~~~ 126 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPD-----NTVPVYLAGYV 126 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS-----SSCCGGGGGCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch-----hHHHHHHhhhH
Confidence 346678999999999999999999999996 999999999999999999988543100000000 00000012378
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------cCc
Q 008934 131 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN--------LGW 202 (548)
Q Consensus 131 ~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~--------~g~ 202 (548)
+.++++|+++|+|.|+..+..+.+++|..|+ ++|++..++.+....+|..+++.++..+... .+|
T Consensus 127 ~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4gc0_A 127 PEFVIYRIIGGIGVGLASMLSPMYIAELAPA-------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence 8899999999999999999999999999998 4599999999999999999998877766543 246
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccCCCCCcchhhhhhcCC--CCcccCCcchhh
Q 008934 203 KVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGK--GSMRLMPSENLR 280 (548)
Q Consensus 203 ~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 280 (548)
+..+.+..+..++..+.. ...|+-+.--..+....+..+.+.....+........+.+....+++ ..+.........
T Consensus 200 ~~~~~~~~~~~~~~~~~~-~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (491)
T 4gc0_A 200 RYMFASECIPALLFLMLL-YTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVI 278 (491)
T ss_dssp HHHHHTTHHHHHHHHHHG-GGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHH
T ss_pred HHHhhhhhhhhhhhhhhh-hcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHH
Confidence 666655554433333322 22222111000000111111111110000000000000000000000 000000000000
Q ss_pred hHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHH-HHhhccCCCCCCceecCc-ccchhhHHHHHHHHHHHHHH
Q 008934 281 FLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALI-KASSMDRHVTPNFEIPSG-SFNIFAILTLTIWIGLYDRA 358 (548)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lg~~~~i~~~-~~~~~~~~~ii~~~~l~~~~ 358 (548)
..... ....++......+. .........+ ...... .......+..++. ..+
T Consensus 279 ~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~ 331 (491)
T 4gc0_A 279 VIGVM---------------------LSIFQQFVGINVVLYYAPEVFKTLG--ASTDIALLQTIIVGVINLTF----TVL 331 (491)
T ss_dssp HHHHH---------------------HHHHHHHTCHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHH---------------------HHHHHHHhhhhHHHhcchHHHHhcC--CCccchhhHHHHHHHHHHHH----HHH
Confidence 00000 00000000000000 0111111111 000000 1111111111111 112
Q ss_pred HHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHH-
Q 008934 359 VLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAF- 437 (548)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~- 437 (548)
...+.+| .++++.+..+....+++++.++.... .....+..+....+...+...
T Consensus 332 ~~~l~dr-------~Grr~~~~~~~~~~~~~~~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4gc0_A 332 AIMTVDK-------FGRKPLQIIGALGMAIGMFSLGTAFY------------------TQAPGIVALLSMLFYVAAFAMS 386 (491)
T ss_dssp HHHHHHH-------HCSHHHHHHHHHHHHHHHHHHHHHHH------------------TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHh-------hcCcchhccchHHHHHHHHHHHHHHh------------------cccchHHHHHHHHHHHHHHHhH
Confidence 2333444 44456677788888887777655431 111222223333333333322
Q ss_pred HhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 008934 438 NMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANF 517 (548)
Q Consensus 438 ~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~ 517 (548)
..|..+.+..+..|++.|++++|+.+..+.+++.+++.+.+.+..... .. ...+....|++.+++++++.
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~-------~~---~~~~~~~~~~i~~~~~~~~~ 456 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW-------LV---AHFHNGFSYWIYGCMGVLAA 456 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH-------HH---HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---hhhhhhHHHHHHHHHHHHHH
Confidence 335556778889999999999999999999999999988877543211 00 00012456888899999999
Q ss_pred HHHHHhhhcccccCCCc-ccccCCCCCcc
Q 008934 518 LYYLACCKAYGPFKGRV-GTAFDDKDGME 545 (548)
Q Consensus 518 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 545 (548)
++.+++.+|+++++.|| ++.++++++.+
T Consensus 457 i~~~~~~PETkg~tLeei~~~f~~~~~~~ 485 (491)
T 4gc0_A 457 LFMWKFVPETKGKTLEELEALWEPETKKT 485 (491)
T ss_dssp HHHHHHCCCCTTCCHHHHGGGTC------
T ss_pred HHHHheecCCCCCCHHHHHHHhCCCCccc
Confidence 98888899999999888 55565554433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-22 Score=203.49 Aligned_cols=167 Identities=15% Similarity=0.167 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Q 008934 20 PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99 (548)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~ 99 (548)
..+....++..+......+.++.+ .+++|.|+.+.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 344556667777777777777765 678999999999999999999999999999999996 999999999999999999
Q ss_pred HHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHH
Q 008934 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY 179 (548)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 179 (548)
+...++ +.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+
T Consensus 81 ~~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 130 (375)
T 2gfp_A 81 VAVTTS-----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ-------LRHANSLLN 130 (375)
T ss_dssp HHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-------CCSHHHHHH
T ss_pred HHHHhc-----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH-------HHHHHHHHH
Confidence 888876 78889999999999999999999999999999854 899999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHH
Q 008934 180 VFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218 (548)
Q Consensus 180 ~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~ 218 (548)
...++|..++|.+++++.++.||+..|++.++..++..+
T Consensus 131 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 131 MGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888999999988776655544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-21 Score=204.64 Aligned_cols=394 Identities=12% Similarity=0.056 Sum_probs=219.4
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.++......++..+++..+.++++.|+++++|+|+.++|++.+.+.++..++++++|+++||+ ||||++.++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 5677777777777788888899999999999999999999999999999999999999999996 999999998877654
Q ss_pred HHHHH---HHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHH
Q 008934 97 GMVLL---WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (548)
Q Consensus 97 ~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (548)
+.... ...... ...+..++.+.+++.|...+...+...+..++.. ++|+.
T Consensus 86 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~ 138 (417)
T 2cfq_A 86 MFAPFFIFIFGPLL----------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-----RRSNF 138 (417)
T ss_dssp CHHHHHHHTHHHHH----------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH-----HHHTC
T ss_pred HHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-----hhccc
Confidence 32211 111100 0012233444444444444444444444443311 22455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccC
Q 008934 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRT 253 (548)
Q Consensus 174 ~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (548)
.++......++|.+++|.+++++.+ .+|+..|++.++..++..+......++. +++++.++..+ ++
T Consensus 139 ~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~-- 204 (417)
T 2cfq_A 139 EFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA-PSSATVANAVG----------AN-- 204 (417)
T ss_dssp CHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC-SCSSCSSSSSS----------SC--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc-ccccccccccc----------cc--
Confidence 5666666778999999999999887 5899999877665433332222212111 00000000000 00
Q ss_pred CCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCc
Q 008934 254 KLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNF 333 (548)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 333 (548)
..+.+.+..... + ....+..+-...... .+.......... ......++ ..
T Consensus 205 -~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~----~~~~~~~~-~~ 254 (417)
T 2cfq_A 205 -HSAFSLKLALEL------F-RQPKLWFLSLYVIGV-----------------SCTYDVFDQQFA----NFFTSFFA-TG 254 (417)
T ss_dssp -CCCCCHHHHHHH------T-TCHHHHHHHHHHHHH-----------------HHHHHHHHHHHH----HHHHHTSS-SH
T ss_pred -cccccHHHHHHH------h-cCCchhhHHHHHHHH-----------------HHHHHHHHHHHH----HHHHHHHh-cc
Confidence 000000000000 0 000000000000000 000000000000 00011110 00
Q ss_pred eecCc---ccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 008934 334 EIPSG---SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGIS 410 (548)
Q Consensus 334 ~i~~~---~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 410 (548)
..... ....++.+..++ ...+.+++.|| .++++.+.++.++.+++++.+.+..
T Consensus 255 ~~~~~~~g~~~~~~~~~~~~--------~~~~~g~l~dr---~g~~~~l~~~~~~~~~~~~~~~~~~------------- 310 (417)
T 2cfq_A 255 EQGTRVFGYVTTMGELLNAS--------IMFFAPLIINR---IGGKNALLLAGTIMSVRIIGSSFAT------------- 310 (417)
T ss_dssp HHHTHHHHHHHHHHHHHHHH--------HHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHTTCC-------------
T ss_pred CCChhHHHHHHHHHHHHHHH--------HHHHHHHHHHH---hcHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 01111 111222222222 22233344444 4555667777777777665553321
Q ss_pred CCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 008934 411 DDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVDDITKRGGN 489 (548)
Q Consensus 411 ~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~~g~~lg~~~~~~i~~~~~~~~~ 489 (548)
+.+.++....+.+++.....+....+..+..|++.||++++. ++..+++|+.+||.+.|.+.+..
T Consensus 311 ---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~----- 376 (417)
T 2cfq_A 311 ---------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI----- 376 (417)
T ss_dssp ---------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-----
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-----
Confidence 455566666677777777777778899999999999999999 48888999999999999765321
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 008934 490 GGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK 531 (548)
Q Consensus 490 ~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~ 531 (548)
++...|...+++.+++.++++...+++++.+
T Consensus 377 -----------g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 377 -----------GFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred -----------CcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 2466788888888888776665555444333
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-12 Score=138.03 Aligned_cols=177 Identities=16% Similarity=0.154 Sum_probs=149.8
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYV--GRYRMIGFGCFTC 94 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~--Grk~~~~~~~~~~ 94 (548)
|.++...+..++..+.++++..+++.|+++.+|+++.+++++.+...++..++.++.|+++|| + |||+.+.++..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 566777778888899999999999999998899999999999999999999999999999999 7 9999888877766
Q ss_pred H-HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHH
Q 008934 95 L-LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (548)
Q Consensus 95 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (548)
. ++.+++.... ..+.+.+.+..++.|++.+...+...+++.|.+|++ .|++
T Consensus 331 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~g~ 382 (451)
T 1pw4_A 331 VTIATIVYWMNP---------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK-------AAGT 382 (451)
T ss_dssp HHHHHHHTTSCC---------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT-------HHHH
T ss_pred HHHHHHHHHHhc---------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh-------hhhh
Confidence 5 4444443321 125566777788889998888888899999999984 4999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHh
Q 008934 174 YFSWYYVFVSA-SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 174 ~~~~~~~~~~i-g~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~ 222 (548)
++++.+...++ |..++|.+.|++.+..||+..|++.+++.+++.++.+.
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999888877776665544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-11 Score=129.37 Aligned_cols=167 Identities=11% Similarity=0.044 Sum_probs=138.1
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHH-HhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILY-LCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
|.++......++.....+++..+++.| +++.+|+++.+++++.+...++..++.+++|+++||+ |||+++.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 566777777788888888999999999 8888899999999999999999999999999999996 99999999998888
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
++.++....+ +.+ ..+..++.+++.+...|...++..|.+|++ ++.+.
T Consensus 337 ~~~~~~~~~~-----------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 384 (438)
T 3o7q_A 337 ALCLISAFAG-----------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD--------TKYGS 384 (438)
T ss_dssp HHHHHHHHCC-----------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG--------HHHHH
T ss_pred HHHHHHHHcC-----------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------ccchh
Confidence 8877776543 333 334457888999999999999999998862 55666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC-chhhhHHHHHHHHHHH
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSA 217 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g-~~~~f~i~~~~~~i~~ 217 (548)
++.. ...+|+.++|.+.|++.+..| ++..|++.+++.++..
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 6555 567999999999999999988 9999998766544443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-11 Score=129.80 Aligned_cols=174 Identities=9% Similarity=0.018 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 19 LPFIIANEAFERMATVGFTPNMILYLCREYNM---ETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~---s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
++......+.....++....++|.|+.+.++. +....+.+.+...++..++.+++|+++||+ |||+++..+.++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence 33333333444445555556788898776653 345567777777788888999999999996 99999998887777
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
++..++.+.. +.+.+++...+.+++.+...+....+..|.+|+ +.|++++
T Consensus 301 ~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~ 350 (417)
T 2cfq_A 301 VRIIGSSFAT-----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIY 350 (417)
T ss_dssp HHHHHHTTCC-----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------HHHHHHH
T ss_pred HHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHH
Confidence 7655554322 445566666667777777667778899999998 4589988
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhc
Q 008934 176 SWY-YVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLA 223 (548)
Q Consensus 176 ~~~-~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~ 223 (548)
++. +...++|++++|.++|++.++.|+...|.+.+++.+++.++.+..
T Consensus 351 g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 884 667789999999999999998899999988887777666654443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-10 Score=122.11 Aligned_cols=187 Identities=10% Similarity=-0.002 Sum_probs=140.2
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHH-----HHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIG-----FGC 91 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~-----~~~ 91 (548)
...+......++....++.....++.|+++.++.+..+.+++.....+...++.++.|+++||+ |||+... ++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~ 361 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGL 361 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHH
Confidence 3345555566677777888888999999999999988888888999999999999999999996 9986655 666
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhh
Q 008934 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (548)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 171 (548)
++..++..++........ .....+.+.+.+..++.+++.+...+...+++.|.+|++. |
T Consensus 362 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~-------~ 420 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF-------N 420 (491)
T ss_dssp HHHHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC-------S
T ss_pred HHHHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH-------H
Confidence 666666555554320000 0011255667778888999999999999999999999955 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCc
Q 008934 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (548)
Q Consensus 172 ~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~ 226 (548)
++++++.+...++|..++|.+.+++.+ .++...|.+.+++.+++.++.+...++
T Consensus 421 g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 421 SQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998876 467778888777776666665555443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5.6e-08 Score=103.03 Aligned_cols=184 Identities=9% Similarity=0.029 Sum_probs=124.3
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 008934 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (548)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (548)
.........++..+..+........++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 334434444444444333444445566778889998888888888899999999999999996 9999999998888877
Q ss_pred HHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhc-cccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGS-GGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~-g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
...+........ ..+..++...+...+. ....+....+.+|.+|.+. |+++++
T Consensus 356 ~~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~-------R~~~~g 409 (491)
T 4gc0_A 356 MFSLGTAFYTQA-------------------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI-------RGKALA 409 (491)
T ss_dssp HHHHHHHHHTTC-------------------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT-------HHHHHH
T ss_pred HHHHHHHHhccc-------------------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH-------HHHHHH
Confidence 766654331110 1222222222222222 2234667789999999944 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh------ccCchhhhHHHHHHHHHHHHHHHhcCCcee
Q 008934 177 WYYVFVSASSIVAVTCIVYIQD------NLGWKVGFGVPAVIMLLSALSFFLASPFYV 228 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~------~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~ 228 (548)
+.+...++++.+++.+.+.+.+ ..++...|++.+++.+++.+..++..|+.+
T Consensus 410 ~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 410 IAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 9999999999998877766543 245667788888877777776666666543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-09 Score=112.15 Aligned_cols=163 Identities=8% Similarity=-0.033 Sum_probs=127.0
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH-HH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT-CL 95 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~-~~ 95 (548)
|.++......++....++++..++|.|+++.+|+++.+++.+.....++..++.++.|+++||+ |++ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4456666777888888889999999999999999999999999999999999999999999996 772 2333332 22
Q ss_pred HHHH--HHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHH
Q 008934 96 LGMV--LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (548)
Q Consensus 96 ~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (548)
.+.. ...... ..+.+.+.+..++.+++.+...+...++..|.+| ++ |++
T Consensus 276 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~-------~g~ 326 (375)
T 2gfp_A 276 AGLLMWIPDWFG---------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL-------AGT 326 (375)
T ss_dssp TSSSSSHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH-------HHH
T ss_pred HHHHHHHHhhhc---------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc-------cch
Confidence 2222 111110 0145566677888899999999999999999987 33 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHH
Q 008934 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAV 211 (548)
Q Consensus 174 ~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~ 211 (548)
++++.+...++|..++|.+.+.+.+..+|...+.+.+.
T Consensus 327 ~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 327 AGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 99999999999999999999999887788877766433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.20 E-value=7.4e-07 Score=95.29 Aligned_cols=150 Identities=13% Similarity=0.164 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----hccccc----hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCC
Q 008934 54 AATNIIFIWTAATNFLPIVGALLA----DSYVGR----YRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESA 125 (548)
Q Consensus 54 ~ag~i~~~~~~~~~~~~~~~G~la----Dr~~Gr----k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (548)
..+.+.....++..+..++.+++. ||+ |+ ++.+.++.++..++.+++....... +..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------------~~~ 400 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMM--------------DGG 400 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTT--------------TTT
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHh--------------cCC
Confidence 355655555566666666666664 553 43 3556667766666655554321000 000
Q ss_pred CccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--Cc-
Q 008934 126 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL--GW- 202 (548)
Q Consensus 126 ~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~--g~- 202 (548)
...+.+.+.+..++.|++.+...+...+++.|.+|++. |++++++.+...++|..++|.+.+.+.+.. +|
T Consensus 401 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~-------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~ 473 (524)
T 2xut_A 401 SALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM-------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQI 473 (524)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC-------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 11245667778889999999999999999999999855 899999999999999999999999987632 12
Q ss_pred --------hhhhHHHHHHHHHHHHHHHhcCC
Q 008934 203 --------KVGFGVPAVIMLLSALSFFLASP 225 (548)
Q Consensus 203 --------~~~f~i~~~~~~i~~~~~~~~~~ 225 (548)
+..|++.+++.+++.++++...+
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 474 VQTGMSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33366666665555555444333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 548 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.92 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.9 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.31 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.26 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.9e-23 Score=216.83 Aligned_cols=178 Identities=12% Similarity=0.002 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHHh---hHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 20 PFIIANEAFERMATVG---FTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 20 ~~~~~~~~~~~~~~~~---~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.++...++..+..|. ....+.++++ ++|+|+++.|++.+++.++..++++++|+++||+ |||+++.++.++..+
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4444444443344332 3445556776 6899999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+.++++.+.... .+.+.+++.|++.|++.|...++..++++|.+|+ ++|+++++
T Consensus 102 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~ 155 (447)
T d1pw4a_ 102 VMLFMGFVPWAT-------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVS 155 (447)
T ss_dssp HHHHHHHCHHHH-------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THHHHHHH
T ss_pred HHhhccccchhh-------------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh-------hccccccc
Confidence 888887654111 1567899999999999999999999999999998 44999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-CchhhhHHHHHHHHHHHHHHHhcCC
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNL-GWKVGFGVPAVIMLLSALSFFLASP 225 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~-g~~~~f~i~~~~~~i~~~~~~~~~~ 225 (548)
+.+...++|..++|.+++.+.+.. +|++.|++.++..++..++.+...+
T Consensus 156 ~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 156 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred ccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence 999999999999999888776654 7999999888766655555444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=2e-23 Score=212.21 Aligned_cols=400 Identities=11% Similarity=0.032 Sum_probs=240.4
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.+|.+....++..+++....++++.|+++++|+|+++.|++.+++.++..+++++.|+++||+ ||||++.++.....+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 7788888888999999988999999999999999999999999999999999999999999996 999999999988888
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+..+.......+. .....++.+.+.+.+.+...........+..++++ +++....+
T Consensus 86 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 141 (417)
T d1pv7a_ 86 MFAPFFIFIFGPL-------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-----RRSNFEFG 141 (417)
T ss_dssp THHHHHHHTHHHH-------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH-----HHHSCCHH
T ss_pred HHHHHHHhhhhhh-------------------HHHHHHHHHHHhhhcccccccchhhcccccccchh-----hhhHHHHH
Confidence 8777776541110 11123333444444444444444333333333221 23445566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccCCCC
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLP 256 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (548)
........+..++|.+++++.+. +|+..+........+..+......++.+.+++.+++..+ .....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~- 208 (417)
T d1pv7a_ 142 RARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGA-----------NHSAF- 208 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHS-----------CCCCC-
T ss_pred HHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhh-----------hcccc-
Confidence 66677788999999999988775 555555555554444444444433322211111000000 00000
Q ss_pred CcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCceec
Q 008934 257 TQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIP 336 (548)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~ 336 (548)
.......... .............. .+......... ........ .
T Consensus 209 --~~~~~~~~~~------~~~~~~~~~~~~~~------------------~~~~~~~~~~~----~~~~~~~~------~ 252 (417)
T d1pv7a_ 209 --SLKLALELFR------QPKLWFLSLYVIGV------------------SCTYDVFDQQF----ANFFTSFF------A 252 (417)
T ss_dssp --CHHHHHHHTT------SSHHHHHHHHHHHH------------------HHHHHHHHHHH----HHHHTTSS------S
T ss_pred --cccccccccc------cccccchhhhhHHH------------------HHHHHhhhccc----cccccccc------c
Confidence 0000000000 00000000000000 00000000000 00001110 0
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccc
Q 008934 337 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV 416 (548)
Q Consensus 337 ~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (548)
.................+.......+.+++.+| .++++.+.++.++.+++.+.+.+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r---~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 310 (417)
T d1pv7a_ 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINR---IGGKNALLLAGTIMSVRIIGSSFAT------------------- 310 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHTCC-------------------
T ss_pred ccccchhhhcccccccccccccchhhhhhhhcc---cccccchhhhHHHHHHhhhcccccc-------------------
Confidence 001111111111112222222344455555555 6677778888888888887776543
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCC
Q 008934 417 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS-GAGLSAANLVASLIMNAVDDITKRGGNGGWIPS 495 (548)
Q Consensus 417 ~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~ 495 (548)
+.+.+.+..++.+++.+...+...+++.+..|++.||++.|+. ++..++|..+++.+.|.+.+..+
T Consensus 311 ---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g---------- 377 (417)
T d1pv7a_ 311 ---SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG---------- 377 (417)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC----------
T ss_pred ---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
Confidence 6778888889999999999999999999999999999999975 56788999999999998765432
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 008934 496 NINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK 531 (548)
Q Consensus 496 ~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~ 531 (548)
+...|++.+++.++..++..+..++.++..
T Consensus 378 ------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (417)
T d1pv7a_ 378 ------FQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHSCCSSCTT
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 466788888888887777766666555443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=2e-11 Score=124.87 Aligned_cols=179 Identities=16% Similarity=0.081 Sum_probs=140.1
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.++......++.....++...+++.|+.+.+|++..++++......+...++.+++|+++||+ +|++..........+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 327 (447)
T d1pw4a_ 249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL 327 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHH
T ss_pred chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHH
Confidence 5667777788888889999999999999999999999999999999999999999999999996 887654444443333
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
...........+ ..+.+...+..++.|++.++..+....+..|.+|+ +.|+++.+
T Consensus 328 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g 382 (447)
T d1pw4a_ 328 VTIATIVYWMNP------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGTAAG 382 (447)
T ss_dssp HHHHHHHTTSCC------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------THHHHHHH
T ss_pred HHHHHHHHHhcc------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHH
Confidence 222222211011 12566777777888888888888999999999998 44899999
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHH
Q 008934 177 WYYVFVSA-SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (548)
Q Consensus 177 ~~~~~~~i-g~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~ 221 (548)
+.+...++ |.+++|.+.|++.+++||+..|++.+++.+++.++..
T Consensus 383 ~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 383 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 99888877 5677899999999999999999887776665555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=7.1e-12 Score=125.53 Aligned_cols=150 Identities=8% Similarity=0.025 Sum_probs=126.4
Q ss_pred HhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCc
Q 008934 44 LCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCE 123 (548)
Q Consensus 44 l~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 123 (548)
...+.+.+....+.......++..++..+.|++.||+ |+|+++.++.++..++..+....+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~------------------ 310 (417)
T d1pv7a_ 250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT------------------ 310 (417)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC------------------
T ss_pred cccccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc------------------
Confidence 3445566777888888889999999999999999996 999999999998888887777654
Q ss_pred CCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhccCc
Q 008934 124 SATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY-VFVSASSIVAVTCIVYIQDNLGW 202 (548)
Q Consensus 124 ~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~~gp~i~~~l~~~~g~ 202 (548)
+.+.+.+..++.|++.+...+...+++.|.+|+ +.|+++++..+ ....+|..++|.+.|++.|++|+
T Consensus 311 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~ 378 (417)
T d1pv7a_ 311 -----SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF 378 (417)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG-------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCH
T ss_pred -----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Confidence 677788888899999999999999999999998 44899999865 45679999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhcC
Q 008934 203 KVGFGVPAVIMLLSALSFFLAS 224 (548)
Q Consensus 203 ~~~f~i~~~~~~i~~~~~~~~~ 224 (548)
+..|++.+++.++..++..+..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 379 QGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999988877776666555443
|