Citrus Sinensis ID: 008936
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 548 | ||||||
| 297833026 | 519 | hypothetical protein ARALYDRAFT_477601 [ | 0.885 | 0.934 | 0.573 | 1e-159 | |
| 145338065 | 521 | uncharacterized protein [Arabidopsis tha | 0.886 | 0.932 | 0.566 | 1e-157 | |
| 255566034 | 510 | hypothetical protein RCOM_1516730 [Ricin | 0.822 | 0.884 | 0.597 | 1e-156 | |
| 449432366 | 536 | PREDICTED: uncharacterized protein LOC10 | 0.912 | 0.932 | 0.524 | 1e-144 | |
| 449487556 | 484 | PREDICTED: uncharacterized protein LOC10 | 0.819 | 0.927 | 0.547 | 1e-138 | |
| 6017097 | 436 | hypothetical protein [Arabidopsis thalia | 0.687 | 0.864 | 0.512 | 1e-109 | |
| 359489142 | 426 | PREDICTED: uncharacterized protein LOC10 | 0.702 | 0.903 | 0.519 | 1e-101 | |
| 242093892 | 525 | hypothetical protein SORBIDRAFT_10g02704 | 0.850 | 0.887 | 0.413 | 1e-100 | |
| 108710675 | 538 | expressed protein [Oryza sativa Japonica | 0.857 | 0.873 | 0.427 | 3e-98 | |
| 115454861 | 539 | Os03g0707300 [Oryza sativa Japonica Grou | 0.859 | 0.873 | 0.424 | 5e-98 |
| >gi|297833026|ref|XP_002884395.1| hypothetical protein ARALYDRAFT_477601 [Arabidopsis lyrata subsp. lyrata] gi|297330235|gb|EFH60654.1| hypothetical protein ARALYDRAFT_477601 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 295/514 (57%), Positives = 369/514 (71%), Gaps = 29/514 (5%)
Query: 19 KNSDFVNRHKIETHLAPTKQKED-NFISFQDREAMELYSRARMQKEEIHSLRQQIAVACL 77
++S+ + RH+IE +++ ED N QD E M LY++ R Q+EEIHSL+++IA ACL
Sbjct: 5 RSSESIKRHEIEKDTIASRKLEDSNAKLIQDPEEMALYAKVRSQEEEIHSLQERIAAACL 64
Query: 78 KELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAED 137
K++QL NEKY LERK ++LR+AIDEKQNE++TSALNELARRKG LEEN KLAHDLKV ED
Sbjct: 65 KDMQLLNEKYGLERKCADLRVAIDEKQNESVTSALNELARRKGDLEENSKLAHDLKVTED 124
Query: 138 ERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTD 197
ERY FM+S+LGLLA+YG+WP V NA+AIS+ +KHL+DQLQ + + DRIR+L+
Sbjct: 125 ERYIFMTSLLGLLAEYGVWPRVANATAISSGIKHLHDQLQWKTKACNDRIRELSSIVENQ 184
Query: 198 AGAGSIDTDRHGVPMHTPNAA-----DRPE----------PTDNMPRTIHDDSHSEMKNL 242
G I D H P ++ + A DR P +N+ R + + + + L
Sbjct: 185 PGTDFISKDNHD-PRNSKSQASYGSTDRGNDYQTNEQLLPPMENVTRNPYHNVMQDTEGL 243
Query: 243 LHNSQMQQLFNNDSSQGFSFGSNRENLG----NVPNALDLRVARGPEEMNAWFPSTHN-- 296
N+Q+ SQG REN G +V +R E ++ F + +
Sbjct: 244 RFNNQI-----GGGSQGIFQQPKRENFGYPLSSVAGKEMIREREEKAESSSMFDAYNGNE 298
Query: 297 EIASSISEGGPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGA 356
E AS + E GPGI+GFQIIG+A PGEK+LGCG+PVRGTTLCMFQWVRHL+DGTR YIEGA
Sbjct: 299 EFASHVYEEGPGIDGFQIIGDAIPGEKVLGCGFPVRGTTLCMFQWVRHLEDGTRQYIEGA 358
Query: 357 TNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRG 416
T+PEYVVTADDVDKLIAVECIPMDDQGRQGELVR FANDQNKI+CD MQ+EID YISRG
Sbjct: 359 THPEYVVTADDVDKLIAVECIPMDDQGRQGELVRLFANDQNKIRCDTEMQAEIDTYISRG 418
Query: 417 HATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFV 476
A+F+V +LMDSSE+WE AT+IL+RS Y+IK ++TE +I E++ KE+ IKVPCG STQFV
Sbjct: 419 QASFNVQLLMDSSESWETATVILKRSSYQIKTNTTE-VISEKYSKELQIKVPCGFSTQFV 477
Query: 477 LTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGKVM 510
L DGSS+P ST NVRMRDTLVLTMRMLQ K +
Sbjct: 478 LISYDGSSHPISTLNVRMRDTLVLTMRMLQSKAL 511
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145338065|ref|NP_187006.2| uncharacterized protein [Arabidopsis thaliana] gi|332640436|gb|AEE73957.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|255566034|ref|XP_002524005.1| hypothetical protein RCOM_1516730 [Ricinus communis] gi|223536732|gb|EEF38373.1| hypothetical protein RCOM_1516730 [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449432366|ref|XP_004133970.1| PREDICTED: uncharacterized protein LOC101207305 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449487556|ref|XP_004157685.1| PREDICTED: uncharacterized protein LOC101226515 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|6017097|gb|AAF01580.1|AC009895_1 hypothetical protein [Arabidopsis thaliana] gi|6091766|gb|AAF03476.1|AC009327_15 hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|359489142|ref|XP_002264857.2| PREDICTED: uncharacterized protein LOC100262416 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|242093892|ref|XP_002437436.1| hypothetical protein SORBIDRAFT_10g027040 [Sorghum bicolor] gi|241915659|gb|EER88803.1| hypothetical protein SORBIDRAFT_10g027040 [Sorghum bicolor] | Back alignment and taxonomy information |
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| >gi|108710675|gb|ABF98470.1| expressed protein [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|115454861|ref|NP_001051031.1| Os03g0707300 [Oryza sativa Japonica Group] gi|108710674|gb|ABF98469.1| expressed protein [Oryza sativa Japonica Group] gi|113549502|dbj|BAF12945.1| Os03g0707300 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 548 | ||||||
| TAIR|locus:2096434 | 521 | AT3G03560 [Arabidopsis thalian | 0.894 | 0.940 | 0.549 | 5.7e-139 | |
| TAIR|locus:2154468 | 729 | AT5G23490 "AT5G23490" [Arabido | 0.348 | 0.262 | 0.436 | 1.6e-62 |
| TAIR|locus:2096434 AT3G03560 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1340 (476.8 bits), Expect = 5.7e-139, Sum P(2) = 5.7e-139
Identities = 281/511 (54%), Positives = 362/511 (70%)
Query: 19 KNSDFVNRHKIETHLAPTKQKED-NFISFQDREAMELYSRARMQKEEIHSLRQQIAVACL 77
++S+ + RH+IE +++ ED N QD E M LY++ R Q+EEIHSL+++IA ACL
Sbjct: 5 RSSESIKRHEIEKDTIASRKLEDTNTKLIQDPEEMALYAKVRSQEEEIHSLQERIAAACL 64
Query: 78 KELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAED 137
K++QL NEKY LERK ++LR+AIDEKQNE++TSALNELARRKG LEENLKLAHDLKV ED
Sbjct: 65 KDMQLLNEKYGLERKCADLRVAIDEKQNESVTSALNELARRKGDLEENLKLAHDLKVTED 124
Query: 138 ERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTD 197
ERY FM+S+LGLLA+YG+WP V NA+AIS+ +KHL+DQLQ + + DRIR+L+
Sbjct: 125 ERYIFMTSLLGLLAEYGVWPRVANATAISSGIKHLHDQLQWKTKACNDRIRELSSIVENQ 184
Query: 198 AGAGSIDTDRHGVPMHTPNAA-----DRP---EPTDNMPRTIHDDSHSEMKNLLHNSQMQ 249
G I D H P ++ A DR + + + + + + + N++ +++
Sbjct: 185 PGTDFISKDNHD-PRNSKTQASYGSTDRGNDYQTNEQLLPPMENVTRNPYHNIMQDTESL 243
Query: 250 QLFNND---SSQGFSFGSNRENLGNVPNAL---DLRVARGPEEMNAWFPSTHNXXXXXXX 303
+ FNN SQG REN G +++ ++ R + N+ +N
Sbjct: 244 R-FNNQIGGGSQGIFPQPKRENFGYPLSSVAGKEMIQEREEKAENSSMFDAYNGNEEFAS 302
Query: 304 XXXXXX---XXFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPE 360
FQIIG+A PGEK+LGCG+PVRGTTLCMFQWVRHL+DGTR YIEGAT+PE
Sbjct: 303 HVYEEGPGIDGFQIIGDAIPGEKVLGCGFPVRGTTLCMFQWVRHLEDGTRQYIEGATHPE 362
Query: 361 YVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATF 420
Y+VTADDVDKLIAVECIPMDDQGRQGELVR FANDQNKI+CD MQ+EID YISRG A+F
Sbjct: 363 YIVTADDVDKLIAVECIPMDDQGRQGELVRLFANDQNKIRCDTEMQTEIDTYISRGQASF 422
Query: 421 SVLMLMDSSENWEQATLILRRSIYRIKIDSTEAI-IEERFPKEVSIKVPCGLSTQFVLTF 479
+V +LMDSSE+WE AT++L+RS Y+IK ++TEA+ I E++ KE+ I+VP G STQFVL
Sbjct: 423 NVQLLMDSSESWEPATVVLKRSSYQIKTNTTEAVVISEKYSKELQIRVPSGESTQFVLIS 482
Query: 480 SDGSSYPFSTYNVRMRDTLVLTMRMLQGKVM 510
DGSS+P ST NVRMRDTLVLTMRMLQ K +
Sbjct: 483 YDGSSHPISTLNVRMRDTLVLTMRMLQSKAL 513
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| TAIR|locus:2154468 AT5G23490 "AT5G23490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| fgenesh2_kg.3__302__AT3G03560.1 | annotation not avaliable (519 aa) | |||||||
(Arabidopsis lyrata) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
No hit with probability above 80.00
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 548 | |||
| 4dix_A | 230 | Plectin-related protein; PH domain, IG domain, mal | 2e-40 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-07 |
| >4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana} Length = 230 | Back alignment and structure |
|---|
Score = 145 bits (366), Expect = 2e-40
Identities = 41/216 (18%), Positives = 78/216 (36%), Gaps = 23/216 (10%)
Query: 300 SSISEGGPGIEGFQIIGEATPGEKL--LGCGYPVRGTTLCMFQWVR-HLQDGTRHYIEGA 356
SS ++I G G L C + C QW R + I GA
Sbjct: 3 SSSKSEENISLVYEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGA 62
Query: 357 TNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRG 416
T Y DV +++ + I G + KI G+ S ++A + +
Sbjct: 63 TKSVYAPEPFDVGRVLHADIIY------DGHSLSLSTVG--KIDPAAGLGSYVEALVRKH 114
Query: 417 HATFSVLML-MDSSENWEQATLILRRSIYRIKIDSTEA-IIEERFPKEVSIKVPCGL--- 471
F+V++ M ++ ++ + RIK+ + I +E + + + CG+
Sbjct: 115 DVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQL---CGVRGG 171
Query: 472 ---STQFVL-TFSDGSSYPFSTYNVRMRDTLVLTMR 503
+ Q + G S+ + + R R+ ++ R
Sbjct: 172 GNAAAQALYWQAKKGVSFVIAFESERERNAAIMLAR 207
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 548 | |||
| 4dix_A | 230 | Plectin-related protein; PH domain, IG domain, mal | 99.94 |
| >4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=218.75 Aligned_cols=189 Identities=20% Similarity=0.294 Sum_probs=160.9
Q ss_pred ceeecccCCCcceeeecc--ccCCccceeeEEEEec-cCCccccccCCCCCcceeccccccceeEEEeEecCCCCcccce
Q 008936 312 FQIIGEATPGEKLLGCGY--PVRGTTLCMFQWVRHL-QDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGEL 388 (548)
Q Consensus 312 lqI~Gda~pG~~L~acGy--~inGTt~C~FQWVRhl-eDGs~~~IeGA~~p~Y~vTADDvd~llAiec~PmDdr~RkGel 388 (548)
+.+-|.-..|.-|+...- ..---|+|+|||+|++ |+|+++.|.||+.|.|.++++||+.+|++||+| .|++
T Consensus 15 y~L~G~e~LGs~L~i~~~~~~~~dlS~CsiQW~R~~~egs~re~IsGAtk~~YAPeP~DVGrlLqadi~~------~G~k 88 (230)
T 4dix_A 15 YEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIY------DGHS 88 (230)
T ss_dssp EEEESCCBTTSCEEEEESSTTSCCGGGSEEEEEEECTTSSSEEECTTCCSSEECCCGGGBTSEEEEEEEE------TTEE
T ss_pred eeecchhhccceEEEEeccCCCCcccccceEEEEeecCCCceeEEeccccccccCCccccccEEEEEEec------CCcE
Confidence 345566677776654332 2234799999999999 889999999999999999999999999999998 3999
Q ss_pred eeeeecCCCccccCccchHHHHHHhhccceEEEEeeecccccccc-ceEEEEeecceEEEecC-CcceeeeccCCcceeE
Q 008936 389 VRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWE-QATLILRRSIYRIKIDS-TEAIIEERFPKEVSIK 466 (548)
Q Consensus 389 Vk~~ANd~~kI~cdpeMq~~I~~~l~~G~AsF~V~ll~~~~d~wE-pATLvirR~gY~IK~~~-~~~~I~EKfS~~~~Ik 466 (548)
|.+|+| ++|.|+|+|++.|++++.+|.+.|.|.++...-+.|| ++++|+.+-.|+||... ..+++.|+||++.++=
T Consensus 89 ~t~~T~--gpId~a~GL~~yVEaL~rk~~tEFNVvv~q~nG~d~~s~sihvl~vgk~RiKL~kg~~t~akE~YSssmQLC 166 (230)
T 4dix_A 89 LSLSTV--GKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQLC 166 (230)
T ss_dssp EEEEEE--EEBBCCTTHHHHHHHHHTTSEEEEEEEEEEETTEECCCCCEEEEEEESSEEEEEETTEEEEEEECCTTCEEE
T ss_pred EEEEec--CCCCCCchhHHHHHHHhhcCCCcEEEEEEEEcCccCccceEEEEEeccEEEEEecCceEEeeeeecccceee
Confidence 999999 9999999999999999999999999999977788999 99999999999999985 4499999999999886
Q ss_pred ecCCC--c-ce-EEEEecCCCeeeeccCCCCCchhhHHHHHHHHHH
Q 008936 467 VPCGL--S-TQ-FVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGK 508 (548)
Q Consensus 467 IP~G~--~-~q-fvi~~sdG~e~~L~~~~~~~RD~iVLtlR~F~~~ 508 (548)
=..|- . +| ..-.-.-|.+..|-++..|.|..+++.-|.|-.-
T Consensus 167 GvRggg~aA~~AlfWq~rkgls~~L~fEseReRNaAImLARrfA~D 212 (230)
T 4dix_A 167 GVRGGGNAAAQALYWQAKKGVSFVIAFESERERNAAIMLARRFACD 212 (230)
T ss_dssp ECSSCTTSGGGEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eccCCcccccceeeEeecCCcEEEEEeccchhhhhHHHHHHHHhcc
Confidence 66542 1 22 2234467888999999999999999998988765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00